Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 35 of 100
Found at i:6633122 original size:109 final size:110
Alignment explanation
Indices: 6632921--6633126 Score: 245
Period size: 109 Copynumber: 1.9 Consensus size: 110
6632911 GACTTTCGGG
* * * * * * *
6632921 CATAATTTTGATTCGTAATGTTGTTTCGATCGATTTTTTTATTTTTGACCTGCAGTGTTATCTCG
1 CATAATTTTGATTCGTAATATTGTCTCGATCGATTTCTCTATTTCTAACCTGCAGTGTTATCTCA
* * *
6632986 GTCAATTCTATAAGATCTTCGAATATAATTTCTAAAACCTCTGGA
66 ATCAATTCTATAAGAACTCCGAATATAATTTCTAAAACCTCTGGA
* **
6633031 CATAATTTTGATTC-TCGATATTGTCTCGATCGA-TTCTCTATTTCTAACCTGTGGTGTTATCTC
1 CATAATTTTGATTCGT-AATATTGTCTCGATCGATTTCTCTATTTCTAACCTGCAGTGTTATCTC
* **
6633094 AATCAATTTTATAAGAACTCCGGGTATAATTTC
65 AATCAATTCTATAAGAACTCCGAATATAATTTC
6633127 GATTCGTGGT
Statistics
Matches: 79, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
109 51 0.65
110 28 0.35
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.44
Consensus pattern (110 bp):
CATAATTTTGATTCGTAATATTGTCTCGATCGATTTCTCTATTTCTAACCTGCAGTGTTATCTCA
ATCAATTCTATAAGAACTCCGAATATAATTTCTAAAACCTCTGGA
Found at i:6633190 original size:196 final size:196
Alignment explanation
Indices: 6632834--6633326 Score: 537
Period size: 196 Copynumber: 2.5 Consensus size: 196
6632824 GACCTCCGAG
** * * * * * *
6632834 CATAATTTCCATTCGCGATGTTGTCTTGATTGATTCTTTATTTTTTACCTATGGTGTTATCTTGG
1 CATAATTTTGATTCGCGATGTTGTCTCGATCGATTCTTTATTTCTAACCTGTGGTGTTATC-TGA
* * * * *
6632899 TCAATTCTGTAAG-ACTTTCGGGCATAATTTTGATTCGTAATGTTGTTTCGATCGATTTTTTTAT
65 TCAATTCTATAAGAAC-TCCGGGCATAATTTCGATTCGTAATGTTGTTCCGATCGATTTCTTTAT
* * * *
6632963 TTTTGACCTGCAGTGTTATCTCGGTCAATTCTATAAGATCTTCGAATATAATTTCTAAAACC-TC
129 TTTTGACCTACAGTGTTATCTCGATCAATTCTATAAGACCTTCGAACATAATTTCTAAAACCTTC
6633027 TGGA
194 -GGA
* * * *
6633031 CATAATTTTGATTCTCGATATTGTCTCGATCGATTCTCTATTTCTAACCTGTGGTGTTATCTCAA
1 CATAATTTTGATTCGCGATGTTGTCTCGATCGATTCTTTATTTCTAACCTGTGGTGTTATCT-GA
* * ** *
6633096 TCAATTTTATAAGAACTCCGGGTATAATTTCGATTCGTGGTGTTG-TCCAGATTGA-TTCTTTAT
65 TCAATTCTATAAGAACTCCGGGCATAATTTCGATTCGTAATGTTGTTCC-GATCGATTTCTTTAT
* * ** *
6633159 TTTTGACCTACGGTGTTATCTCGATCAATTCTGTAAGACCTTCGGGCATGATTTCTAAAACCTTC
129 TTTTGACCTACAGTGTTATCTCGATCAATTCTATAAGACCTTCGAACATAATTTCTAAAACCTTC
*
6633224 GGG
194 GGA
* * * *
6633227 TATAATTTTGATTCGC-AGTGTTATCTCGATCGATTCTTTATTTCTAACTTGTGATGTTATCTGA
1 CATAATTTTGATTCGCGA-TGTTGTCTCGATCGATTCTTTATTTCTAACCTGTGGTGTTATCTGA
* * * *
6633291 TCAATTCTATAAGACCTCCGAGCATAAATTCAATTC
65 TCAATTCTATAAGAACTCCGGGCATAATTTCGATTC
6633327 ACGATGTTAT
Statistics
Matches: 245, Mismatches: 46, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
195 32 0.13
196 118 0.48
197 93 0.38
198 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.16, T:0.43
Consensus pattern (196 bp):
CATAATTTTGATTCGCGATGTTGTCTCGATCGATTCTTTATTTCTAACCTGTGGTGTTATCTGAT
CAATTCTATAAGAACTCCGGGCATAATTTCGATTCGTAATGTTGTTCCGATCGATTTCTTTATTT
TTGACCTACAGTGTTATCTCGATCAATTCTATAAGACCTTCGAACATAATTTCTAAAACCTTCGG
A
Found at i:6633373 original size:196 final size:197
Alignment explanation
Indices: 6632959--6633430 Score: 485
Period size: 196 Copynumber: 2.4 Consensus size: 197
6632949 ATCGATTTTT
* * * * * * *
6632959 TTATTTTTGACCTGCAGTGTTATCTCGGTCAATTCTATAAGATCTTCGAATATAATTTCTAAAAC
1 TTATTTTTGACCTACGGTGTTATCTCGATCAATTCTATAAGACCTTCGGACATGATTTCTAAAAC
* * *
6633024 C-TCTGGACATAATTTTGATTCTCGATATTGTCTCGATCGATTCTCTATTTCTAACCTGTGGTGT
66 CTTCTGGACATAATTTTGATTCGCGATATTATCTCGATCGATTCTCTATTTCTAACCTGTGATGT
* * * * * ** * * *
6633088 TATCTCAATCAATTTTATAAGAACTCCGGGTATAATTTCGATTCGTGGTGTTGTCCAGATTGATT
131 TATCTCAATCAATTCTATAAGAACTCCGAGCATAAATTCAATTCACGATGTTATCCAGATCGATT
*
6633153 CT
196 CA
* *
6633155 TTATTTTTGACCTACGGTGTTATCTCGATCAATTCTGTAAGACCTTCGGGCATGATTTCTAAAAC
1 TTATTTTTGACCTACGGTGTTATCTCGATCAATTCTATAAGACCTTCGGACATGATTTCTAAAAC
** * * *
6633220 CTTC-GGGTATAATTTTGATTCGC-AGTGTTATCTCGATCGATTCTTTATTTCTAACTTGTGATG
66 CTTCTGGACATAATTTTGATTCGCGA-TATTATCTCGATCGATTCTCTATTTCTAACCTGTGATG
* *
6633283 TTATCT-GATCAATTCTATAAGACCTCCGAGCATAAATTCAATTCACGATGTTATCCCA-ATCGA
130 TTATCTCAATCAATTCTATAAGAACTCCGAGCATAAATTCAATTCACGATGTTAT-CCAGATCGA
6633346 TTCA
194 TTCA
* * * * *
6633350 TTATTTTTTGA-CT-GGTTGTGTTAT-TCCAGTCGATTCTATAAGACCTCCGGACATGATTCCTA
1 TTA-TTTTTGACCTACG--GTGTTATCTCGA-TCAATTCTATAAGACCTTCGGACATGATTTCTA
* * *
6633412 AGACC-TCTGGGCATGATTT
62 AAACCTTCTGGACATAATTT
6633431 CTAAGACCTT
Statistics
Matches: 228, Mismatches: 40, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
194 1 0.00
195 55 0.24
196 170 0.75
197 2 0.01
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.40
Consensus pattern (197 bp):
TTATTTTTGACCTACGGTGTTATCTCGATCAATTCTATAAGACCTTCGGACATGATTTCTAAAAC
CTTCTGGACATAATTTTGATTCGCGATATTATCTCGATCGATTCTCTATTTCTAACCTGTGATGT
TATCTCAATCAATTCTATAAGAACTCCGAGCATAAATTCAATTCACGATGTTATCCAGATCGATT
CA
Found at i:6633445 original size:22 final size:22
Alignment explanation
Indices: 6633388--6633447 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
6633378 GTCGATTCTA
* *
6633388 TAAGACCTCCGGACATGATTCC
1 TAAGACCTTCGGGCATGATTCC
*
6633410 TAAGACC-TCTGGGCATGATTTC
1 TAAGACCTTC-GGGCATGATTCC
6633432 TAAGACCTTCGGGCAT
1 TAAGACCTTCGGGCAT
6633448 AAATTCAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 1 0.03
22 30 0.91
23 2 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.27
Consensus pattern (22 bp):
TAAGACCTTCGGGCATGATTCC
Found at i:6633752 original size:109 final size:111
Alignment explanation
Indices: 6633527--6633766 Score: 317
Period size: 109 Copynumber: 2.2 Consensus size: 111
6633517 GTTAATCTTT
* * * *
6633527 GACTCGTGGTATAATCTCGATCATTTCTATAGTTTCTTTGACTTACGATTTAATCCCAGTCTCTT
1 GACTCGTGGTTTAATCTCGATAATTTCTATAGTTTCCTTGACTTACAATTTAATCCCAGTCTCTT
* ** *
6633592 TTATCTTTCTAACTTGCAGTTCAATCCCAGTTGTCGTCAATATTTG
66 TTATCTTTCTAACTTGCAGTTCAATCCAAGTTAACATCAATATTTG
* *
6633638 G-CTCGTGGTTTAATCTCGATAATTTC-ATTA-TTTCCTTGACTTACAATTTAATCTCAGTCTTT
1 GACTCGTGGTTTAATCTCGATAATTTCTA-TAGTTTCCTTGACTTACAATTTAATCCCAGTCTCT
* *
6633700 TTTATCTTTCTAACTTGCTGTTCAATCCAAGTTAACATC-ATTTTTG
65 TTTATCTTTCTAACTTGCAGTTCAATCCAAGTTAACATCAATATTTG
**
6633746 GACTCGTAATTTAATCTCGAT
1 GACTCGTGGTTTAATCTCGAT
6633767 CTTTTTATTC
Statistics
Matches: 113, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
108 7 0.06
109 80 0.71
110 25 0.22
111 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.12, T:0.45
Consensus pattern (111 bp):
GACTCGTGGTTTAATCTCGATAATTTCTATAGTTTCCTTGACTTACAATTTAATCCCAGTCTCTT
TTATCTTTCTAACTTGCAGTTCAATCCAAGTTAACATCAATATTTG
Found at i:6633946 original size:34 final size:34
Alignment explanation
Indices: 6633908--6633978 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
6633898 CAAGTTAACA
* * *
6633908 TTATTCTCTGATTCGTGGTTTAATCACGATCTCT
1 TTATTCTCTGATTCGAGGTTCAATCACGACCTCT
*
6633942 TTATTCTCTGATTCGAGGTTCAATCCCGACCTCT
1 TTATTCTCTGATTCGAGGTTCAATCACGACCTCT
6633976 TTA
1 TTA
6633979 ATTCAAAATC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.18, C:0.24, G:0.14, T:0.44
Consensus pattern (34 bp):
TTATTCTCTGATTCGAGGTTCAATCACGACCTCT
Found at i:6634351 original size:342 final size:340
Alignment explanation
Indices: 6633712--6634961 Score: 1634
Period size: 342 Copynumber: 3.7 Consensus size: 340
6633702 TATCTTTCTA
* * *
6633712 ACTTGCTG-TTCAATCCAAGTTAACATCATT-TTTGGACTCGTAATTTAATCTCGATCTTTTTAT
1 ACTTG-TGATTCAATCCAAGTTAACATCATTCTCT-GACTCGCAGTTTAATCTCGATCTTTTTAT
*
6633775 TCTCTGATTTAC-AGTTCAATCTCGATCTCTTTAATTCAAAGTCACAGTTTAATCTCGATTGTTG
64 TCTCTGATTTACGA-TTCAATCTCAATCTCTTTAATTCAAAGTCACAGTTTAATCTCGATTGTTG
* * * *
6633839 TTATCCTCTGACTCGTGGTTTAATCCTGGTCTTCTTATTTTCTTACTTGTGATTCAATTCAAGTT
128 TTATCCTTTGACTCGTGGTTTAATCCCGATCTTCTTATTTTCTTACTTGTGATTCAATCCAAGTT
* * * *
6633904 AACATTATTCTCTGATTCGTGGTTTAATCACGATCTCTTTATTCTCTGATTCGAGGTTCAATCCC
193 AACATTATTCTCTGATTCGCGATTTAATCTCGATCTCTTTATTCTCTGATTCGTGGTTCAAT-CC
* * * *
6633969 GACCTCTTTAATTCAAAATCATAGTTTAATATCGGTTGTTGTTATCCTTTGACTCATGGTCTAAT
257 GATCTCTTTAATTCAAAATTATAGTTTAATCTC-GTTGTTGTTATCCTTTGACTCGTGGTCTAAT
* *
6634034 CCCGATCTCCTTATTTTCGG
321 CTCGATCTCTTTATTTTCGG
* *
6634054 ACTTGTGATTCAATCCAAGTTAACTTTATTCTCTGACTCG-AGGTTTAATCTCGATCTTTTTATT
1 ACTTGTGATTCAATCCAAGTTAACATCATTCTCTGACTCGCA-GTTTAATCTCGATCTTTTTATT
* * * * *
6634118 CTCTGATTTATGATTTAATTTCGATCTCTTTAATTCAAAGTCACAGTTTAATCTTGATTGTTGTT
65 CTCTGATTTACGATTCAATCTCAATCTCTTTAATTCAAAGTCACAGTTTAATCTCGATTGTTGTT
*
6634183 ATCCTTTGACTCGTGGTTTAATCTCGATCTTCTTATTTTCTTACTTGTGATTCAATCCAAGTTAA
130 ATCCTTTGACTCGTGGTTTAATCCCGATCTTCTTATTTTCTTACTTGTGATTCAATCCAAGTTAA
* * *
6634248 CATTATTATCTAATTCACGATTTAATCTCGATCTCTTTATTCT-TCGATTCGTGGTTCAATCTCG
195 CATTATTCTCTGATTCGCGATTTAATCTCGATCTCTTTATTCTCT-GATTCGTGGTTCAATC-CG
*
6634312 ATCTCTTTAATTCAAAATTACAGTTTAATCTCAGTTGTTGTTATCCTTTGACTCGTGGTCTAATC
258 ATCTCTTTAATTCAAAATTATAGTTTAATCTC-GTTGTTGTTATCCTTTGACTCGTGGTCTAATC
6634377 TCGATCTCTTTATTTTCGG
322 TCGATCTCTTTATTTTCGG
* * * *
6634396 ACTTGTGATTCAATCCAAGTTAACGTCATTTTTTGACTCGCAGTTTAATCCCGATCTTTTTATTC
1 ACTTGTGATTCAATCCAAGTTAACATCATTCTCTGACTCGCAGTTTAATCTCGATCTTTTTATTC
* * * * * *
6634461 TTTGATTTACGGTTCAATCTCAATCTATTTAATTCAAAGTCACAATTTAATCTTGATTATTGTTA
66 TCTGATTTACGATTCAATCTCAATCTCTTTAATTCAAAGTCACAGTTTAATCTCGATTGTTGTTA
* * * *
6634526 T-CTTCTGAGTCATGGTTTAATCCCGATCTCCTTATTTTCTTACTTGTGATTCAATTCAAGTTAA
131 TCCTT-TGACTCGTGGTTTAATCCCGATCTTCTTATTTTCTTACTTGTGATTCAATCCAAGTTAA
* *
6634590 CATTATTCTATGATTCGC-AGTTTAATCTCGGTCTCTTTATTCTCTGATTCGTGGTTCAATCCTG
195 CATTATTCTCTGATTCGCGA-TTTAATCTCGATCTCTTTATTCTCTGATTCGTGGTTCAATCC-G
* * *
6634654 ATCTCTTTAATTCAAAATTATAGTTTAATCTCGATTATTGTTATCCTTTGACTCGTGGTTTAATT
258 ATCTCTTTAATTCAAAATTATAGTTTAATCTCG-TTGTTGTTATCCTTTGACTCGTGGTCTAATC
* **
6634719 TCGGTCTCTTTATTTTCTT
322 TCGATCTCTTTATTTTCGG
* * * * * * * *
6634738 ACTTGTGATTTAATCCAAGTTAACATTATTCTCTAATTTGCGGTTTAATCTCGGTCTCTTTATTC
1 ACTTGTGATTCAATCCAAGTTAACATCATTCTCTGACTCGCAGTTTAATCTCGATCTTTTTATTC
* * * *
6634803 TCTGATTCACGATTCAATCTCAATCTCTTTAATTCAAAATTACAGTTTAATCTCGGTTGTTGTTA
66 TCTGATTTACGATTCAATCTCAATCTCTTTAATTCAAAGTCACAGTTTAATCTCGATTGTTGTTA
* * * ** *
6634868 TCTTTTAACTCGTGGTCTAATCCCGATC-TCTTTATTTTCAAACTTGTGATTTAATCCAAGTTAA
131 TCCTTTGACTCGTGGTTTAATCCCGATCTTC-TTATTTTCTTACTTGTGATTCAATCCAAGTTAA
* * * * * *
6634932 CGTCATTTTTTGACTCGCAATTTAATCTCG
195 CATTATTCTCTGATTCGCGATTTAATCTCG
6634962 GTCACTTTTA
Statistics
Matches: 797, Mismatches: 96, Indels: 30
0.86 0.10 0.03
Matches are distributed among these distances:
341 12 0.02
342 777 0.97
343 8 0.01
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.45
Consensus pattern (340 bp):
ACTTGTGATTCAATCCAAGTTAACATCATTCTCTGACTCGCAGTTTAATCTCGATCTTTTTATTC
TCTGATTTACGATTCAATCTCAATCTCTTTAATTCAAAGTCACAGTTTAATCTCGATTGTTGTTA
TCCTTTGACTCGTGGTTTAATCCCGATCTTCTTATTTTCTTACTTGTGATTCAATCCAAGTTAAC
ATTATTCTCTGATTCGCGATTTAATCTCGATCTCTTTATTCTCTGATTCGTGGTTCAATCCGATC
TCTTTAATTCAAAATTATAGTTTAATCTCGTTGTTGTTATCCTTTGACTCGTGGTCTAATCTCGA
TCTCTTTATTTTCGG
Found at i:6634697 original size:513 final size:511
Alignment explanation
Indices: 6633754--6634958 Score: 1605
Period size: 513 Copynumber: 2.3 Consensus size: 511
6633744 TGGACTCGTA
* * * * *
6633754 ATTTAATCTCGATCTTTTTATTCTCTGATTTACAGTTCAATCTCGATCTCTTTAATTCAAAGTCA
1 ATTTAATCTCGATCTCTTTATTCTCTGATTCACGGTTCAATCTCGATCTCTTTAATTCAAAATTA
* * * **
6633819 CAGTTTAATCTCGATTGTTGTTATCCTCTGACTCGTGGTTTAATCCTGGTCT-TCTTATTTTCTT
66 CAGTTTAATCTCG-TTGTTGTTATCCTTTGACTCGTGGTCTAATCC-GATCTCT-TTATTTTCAA
* * * * * * **
6633883 ACTTGTGATTCAATTCAAGTTAACATTATTCTCTGATTCGTGGTTTAATCACGATCTCTTTATTC
128 ACTTGTGATTCAATCCAAGTTAACGTCATTTTTTGACTCGCAGTTTAATCACGATCTCTTTATTC
* * * * * *
6633948 TCTGATTCGAGGTTCAATCCCGACCTCTTTAATTCAAAATCATAGTTTAATATCGGTTGTTGTTA
193 TCTGATTCGAGGTTCAATCCCAACCTATTTAATTCAAAATCACAATTTAATATCGATTATTGTTA
6634013 TCCTTTGACTCATGGTCTAATCCCGATCTCCTTATTTTCGGACTTGTGATTCAATCCAAGTTAAC
258 TCCTTTGACTCATGGTCTAATCCCGATCTCCTTATTTTCGGACTTGTGATTCAATCCAAGTTAAC
* * * * * *
6634078 TTTATTCTCTGACTCGAGGTTTAATCTCGATCTTTTTATTCTCTGATTTATGATTTAATTTCGAT
323 ATTATTCTATGACTCGAGGTTTAATCTCGATCTCTTTATTCTCTGATTCATGATTCAATCTCGAT
* * *
6634143 CTCTTTAATTCAAAGTCACAGTTTAATCTTGATTGTTGTTATCCTTTGACTCGTGGTTTAATCTC
388 CTCTTTAATTCAAAATCACAGTTTAATCTCGATTATTGTTATCCTTTGACTCGTGGTTTAATCTC
6634208 GATCT-TCTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTATCTAATTCACG
453 GATCTCT-TTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTATCTAATTCACG
**
6634267 ATTTAATCTCGATCTCTTTATTCT-TCGATTCGTGGTTCAATCTCGATCTCTTTAATTCAAAATT
1 ATTTAATCTCGATCTCTTTATTCTCT-GATTCACGGTTCAATCTCGATCTCTTTAATTCAAAATT
**
6634331 ACAGTTTAATCTCAGTTGTTGTTATCCTTTGACTCGTGGTCTAATCTCGATCTCTTTATTTTCGG
65 ACAGTTTAATCTC-GTTGTTGTTATCCTTTGACTCGTGGTCTAATC-CGATCTCTTTATTTTCAA
* *
6634396 ACTTGTGATTCAATCCAAGTTAACGTCATTTTTTGACTCGCAGTTTAATCCCGATCTTTTTATTC
128 ACTTGTGATTCAATCCAAGTTAACGTCATTTTTTGACTCGCAGTTTAATCACGATCTCTTTATTC
* * * * * * *
6634461 TTTGATT-TACGGTTCAATCTCAATCTATTTAATTCAAAGTCACAATTTAATCTTGATTATTGTT
193 TCTGATTCGA-GGTTCAATCCCAACCTATTTAATTCAAAATCACAATTTAATATCGATTATTGTT
* * ** *
6634525 AT-CTTCTGAGTCATGGTTTAATCCCGATCTCCTTATTTTCTTACTTGTGATTCAATTCAAGTTA
257 ATCCTT-TGACTCATGGTCTAATCCCGATCTCCTTATTTTCGGACTTGTGATTCAATCCAAGTTA
* * * *
6634589 ACATTATTCTATGATTCGCA-GTTTAATCTCGGTCTCTTTATTCTCTGATTCGTGGTTCAATC-C
321 ACATTATTCTATGACTCG-AGGTTTAATCTCGATCTCTTTATTCTCTGATTCATGATTCAATCTC
* *
6634652 TGATCTCTTTAATTCAAAATTATAGTTTAATCTCGATTATTGTTATCCTTTGACTCGTGGTTTAA
385 -GATCTCTTTAATTCAAAATCACAGTTTAATCTCGATTATTGTTATCCTTTGACTCGTGGTTTAA
* * * * **
6634717 TTTCGGTCTCTTTATTTTCTTACTTGTGATTTAATCCAAGTTAACATTATTCTCTAATTTGCG
449 TCTCGATCTCTTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTATCTAATTCACG
* * * *
6634780 GTTTAATCTCGGTCTCTTTATTCTCTGATTCACGATTCAATCTCAATCTCTTTAATTCAAAATTA
1 ATTTAATCTCGATCTCTTTATTCTCTGATTCACGGTTCAATCTCGATCTCTTTAATTCAAAATTA
* *
6634845 CAGTTTAATCTCGGTTGTTGTTATCTTTTAACTCGTGGTCTAATCCCGATCTCTTTATTTTCAAA
66 CAGTTTAATCTC-GTTGTTGTTATCCTTTGACTCGTGGTCTAAT-CCGATCTCTTTATTTTCAAA
* *
6634910 CTTGTGATTTAATCCAAGTTAACGTCATTTTTTGACTCGCAATTTAATC
129 CTTGTGATTCAATCCAAGTTAACGTCATTTTTTGACTCGCAGTTTAATC
6634959 TCGGTCACTT
Statistics
Matches: 607, Mismatches: 74, Indels: 22
0.86 0.11 0.03
Matches are distributed among these distances:
512 6 0.01
513 594 0.98
514 7 0.01
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (511 bp):
ATTTAATCTCGATCTCTTTATTCTCTGATTCACGGTTCAATCTCGATCTCTTTAATTCAAAATTA
CAGTTTAATCTCGTTGTTGTTATCCTTTGACTCGTGGTCTAATCCGATCTCTTTATTTTCAAACT
TGTGATTCAATCCAAGTTAACGTCATTTTTTGACTCGCAGTTTAATCACGATCTCTTTATTCTCT
GATTCGAGGTTCAATCCCAACCTATTTAATTCAAAATCACAATTTAATATCGATTATTGTTATCC
TTTGACTCATGGTCTAATCCCGATCTCCTTATTTTCGGACTTGTGATTCAATCCAAGTTAACATT
ATTCTATGACTCGAGGTTTAATCTCGATCTCTTTATTCTCTGATTCATGATTCAATCTCGATCTC
TTTAATTCAAAATCACAGTTTAATCTCGATTATTGTTATCCTTTGACTCGTGGTTTAATCTCGAT
CTCTTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTATCTAATTCACG
Found at i:6634964 original size:171 final size:171
Alignment explanation
Indices: 6633700--6634961 Score: 1457
Period size: 171 Copynumber: 7.4 Consensus size: 171
6633690 CTCAGTCTTT
* * * * *
6633700 TTTATCTTTCTAACTTGCTG-TTCAATCCAAGTTAACATCATT-TTTGGACTCGTAATTTAATCT
1 TTTAT-TTTCTTACTTG-TGATTCAATCCAAGTTAACATTATTCTCT-GACTCGCAGTTTAATCT
* * * *
6633763 CGATCTTTTTATTCTCTGATTTACAGTTCAATCTCGATCTCTTTAATTCAAAGTCACAGTTTAAT
63 CGATCTCTTTATTCTCTGATTCACGGTTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAAT
* * *
6633828 CTCGATTGTTGTTATCCTCTGACTCGTGGTTTAATCCTGGTCT-
128 CTCGATTGTTGTTATCCTTTGACTCGTGGTTTAATCCCGATCTC
* * ** *
6633871 TCTTATTTTCTTACTTGTGATTCAATTCAAGTTAACATTATTCTCTGATTCGTGGTTTAATCACG
1 T-TTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTGACTCGCAGTTTAATCTCG
* * * *
6633936 ATCTCTTTATTCTCTGATTCGA-GGTTCAATCCCGACCTCTTTAATTCAAAATCATAGTTTAATA
65 ATCTCTTTATTCTCTGATTC-ACGGTTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAATC
* * *
6634000 TCGGTTGTTGTTATCCTTTGACTCATGGTCTAATCCCGATCTC
129 TCGATTGTTGTTATCCTTTGACTCGTGGTTTAATCCCGATCTC
* ** *
6634043 CTTATTTTCGGACTTGTGATTCAATCCAAGTTAACTTTATTCTCTGACTCG-AGGTTTAATCTCG
1 TTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTGACTCGCA-GTTTAATCTCG
* * * * * * *
6634107 ATCTTTTTATTCTCTGATTTATGATTTAATTTCGATCTCTTTAATTCAAAGTCACAGTTTAATCT
65 ATCTCTTTATTCTCTGATTCACGGTTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAATCT
* *
6634172 TGATTGTTGTTATCCTTTGACTCGTGGTTTAATCTCGATCT-
130 CGATTGTTGTTATCCTTTGACTCGTGGTTTAATCCCGATCTC
* * * *
6634213 TCTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTATCTAATTCAC-GATTTAATCTC
1 T-TTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTGACTCGCAG-TTTAATCTC
** *
6634277 GATCTCTTTATTCT-TCGATTCGTGGTTCAATCTCGATCTCTTTAATTCAAAATTACAGTTTAAT
64 GATCTCTTTATTCTCT-GATTCACGGTTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAAT
* *
6634341 CTC-AGTTGTTGTTATCCTTTGACTCGTGGTCTAATCTCGATCTC
128 CTCGA-TTGTTGTTATCCTTTGACTCGTGGTTTAATCCCGATCTC
** * * * * *
6634385 TTTATTTTCGGACTTGTGATTCAATCCAAGTTAACGTCATTTTTTGACTCGCAGTTTAATCCCGA
1 TTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTGACTCGCAGTTTAATCTCGA
* * * * * * * *
6634450 TCTTTTTATTCTTTGATTTACGGTTCAATCTCAATCTATTTAATTCAAAGTCACAATTTAATCTT
66 TCTCTTTATTCTCTGATTCACGGTTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAATCTC
* * *
6634515 GATTATTGTTAT-CTTCTGAGTCATGGTTTAATCCCGATCTC
131 GATTGTTGTTATCCTT-TGACTCGTGGTTTAATCCCGATCTC
* * * * *
6634556 CTTATTTTCTTACTTGTGATTCAATTCAAGTTAACATTATTCTATGATTCGCAGTTTAATCTCGG
1 TTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTGACTCGCAGTTTAATCTCGA
** * *
6634621 TCTCTTTATTCTCTGATTCGTGGTTCAATC-CTGATCTCTTTAATTCAAAATTATAGTTTAATCT
66 TCTCTTTATTCTCTGATTCACGGTTCAATCTC-GATCTCTTTAATTCAAAATCACAGTTTAATCT
* ** *
6634685 CGATTATTGTTATCCTTTGACTCGTGGTTTAATTTCGGTCTC
130 CGATTGTTGTTATCCTTTGACTCGTGGTTTAATCCCGATCTC
* * * * * *
6634727 TTTATTTTCTTACTTGTGATTTAATCCAAGTTAACATTATTCTCTAATTTGCGGTTTAATCTCGG
1 TTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTGACTCGCAGTTTAATCTCGA
* * *
6634792 TCTCTTTATTCTCTGATTCACGATTCAATCTCAATCTCTTTAATTCAAAATTACAGTTTAATCTC
66 TCTCTTTATTCTCTGATTCACGGTTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAATCTC
* * * *
6634857 GGTTGTTGTTATCTTTTAACTCGTGGTCTAATCCCGATCTC
131 GATTGTTGTTATCCTTTGACTCGTGGTTTAATCCCGATCTC
** * * * * * *
6634898 TTTATTTTCAAACTTGTGATTTAATCCAAGTTAACGTCATTTTTTGACTCGCAATTTAATCTCG
1 TTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTGACTCGCAGTTTAATCTCG
6634962 GTCACTTTTA
Statistics
Matches: 924, Mismatches: 147, Indels: 40
0.83 0.13 0.04
Matches are distributed among these distances:
170 10 0.01
171 899 0.97
172 15 0.02
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (171 bp):
TTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTGACTCGCAGTTTAATCTCGA
TCTCTTTATTCTCTGATTCACGGTTCAATCTCGATCTCTTTAATTCAAAATCACAGTTTAATCTC
GATTGTTGTTATCCTTTGACTCGTGGTTTAATCCCGATCTC
Found at i:6635068 original size:36 final size:36
Alignment explanation
Indices: 6634963--6635100 Score: 93
Period size: 36 Copynumber: 3.8 Consensus size: 36
6634953 TTAATCTCGG
* * * *
6634963 TCACTTTTACTT-TCTGAGTTGCGATTTAATCCCAG
1 TCACTTTTATTTCTCTGACTTACGATTTAATCCCAA
* * * *
6634998 TCA-TTCCTATAGTTTCTC-AACTCACGGTTTAATCCTAA
1 TCACTT--T-TA-TTTCTCTGACTTACGATTTAATCCCAA
* * *
6635036 TCGCTTTTATTTCTCTTACTTACGATTTAATCCCAG
1 TCACTTTTATTTCTCTGACTTACGATTTAATCCCAA
* * *
6635072 TCATTTTTATTTTTCTGACTTGCGATTTA
1 TCACTTTTATTTCTCTGACTTACGATTTA
6635101 GTTCCAATTG
Statistics
Matches: 77, Mismatches: 19, Indels: 13
0.71 0.17 0.12
Matches are distributed among these distances:
34 2 0.03
35 9 0.12
36 42 0.55
37 3 0.04
38 17 0.22
39 4 0.05
ACGTcount: A:0.21, C:0.22, G:0.10, T:0.46
Consensus pattern (36 bp):
TCACTTTTATTTCTCTGACTTACGATTTAATCCCAA
Found at i:6635355 original size:23 final size:20
Alignment explanation
Indices: 6635298--6635338 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
6635288 GGGTCTACAT
6635298 TTTTTTAATAATAATAATAA
1 TTTTTTAATAATAATAATAA
*
6635318 TTTTTTAAAAATAATAATAA
1 TTTTTTAATAATAATAATAA
6635338 T
1 T
6635339 GTTGGTTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TTTTTTAATAATAATAATAA
Found at i:6635373 original size:16 final size:17
Alignment explanation
Indices: 6635352--6635383 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6635342 GGTTTAATTA
6635352 TAATT-AAAAAATTAAT
1 TAATTAAAAAAATTAAT
6635368 TAATTAAAAAAATTAA
1 TAATTAAAAAAATTAA
6635384 AAAAATTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAATTAAAAAAATTAAT
Found at i:6642992 original size:9 final size:9
Alignment explanation
Indices: 6642978--6643029 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
6642968 TTAAGTTTTT
6642978 TTTTATTTA
1 TTTTATTTA
6642987 TTTTATTTA
1 TTTTATTTA
6642996 TTGTTATTATA
1 TT-TTATT-TA
*
6643007 TTTTTATTGA
1 -TTTTATTTA
6643017 -TTTATTGTA
1 TTTTATT-TA
6643026 TTTT
1 TTTT
6643030 GGAAAAAGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
8 6 0.17
9 12 0.33
10 9 0.25
11 7 0.19
12 2 0.06
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (9 bp):
TTTTATTTA
Found at i:6643681 original size:9 final size:9
Alignment explanation
Indices: 6643667--6643696 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
6643657 CATGTTTGAT
*
6643667 TAAAATAAA
1 TAAAATATA
6643676 TAAAATATA
1 TAAAATATA
6643685 TAAAATATA
1 TAAAATATA
6643694 TAA
1 TAA
6643697 TTTCATTAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (9 bp):
TAAAATATA
Found at i:6646767 original size:78 final size:78
Alignment explanation
Indices: 6646638--6646794 Score: 305
Period size: 78 Copynumber: 2.0 Consensus size: 78
6646628 TTTCACAACA
6646638 TGGCAATCATTGTATTCATTTGGTAAGAAGTTGTGATCTTGGATCTTGAAATTGAAATTAATGAA
1 TGGCAATCATTGTATTCATTTGGTAAGAAGTTGTGATCTTGGATCTTGAAATTGAAATTAATGAA
6646703 AGTATGAAATGTT
66 AGTATGAAATGTT
6646716 TGGCAATCATTGTATTCATTTGGTAAGAAGTTGTGATCTTGGATCTTGAAATTGAAATTAATGAA
1 TGGCAATCATTGTATTCATTTGGTAAGAAGTTGTGATCTTGGATCTTGAAATTGAAATTAATGAA
*
6646781 AGTATGCAATGTT
66 AGTATGAAATGTT
6646794 T
1 T
6646795 TTACTTGAAG
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 78 1.00
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.39
Consensus pattern (78 bp):
TGGCAATCATTGTATTCATTTGGTAAGAAGTTGTGATCTTGGATCTTGAAATTGAAATTAATGAA
AGTATGAAATGTT
Found at i:6647307 original size:43 final size:44
Alignment explanation
Indices: 6647255--6647349 Score: 122
Period size: 43 Copynumber: 2.2 Consensus size: 44
6647245 CTTTTTATAT
* * *
6647255 TTTTCAAAAATTGTTAAG-TCTCTGATAAAAAGAGCCTTTTAAAG
1 TTTTCAAAAATTATTAAGCT-TCTAATAAAAAGAGCCTTTTAAAA
* *
6647299 TTTT-AAAAATTATTAAGCTTCTAATAAGATGAGCCTTTTAAAA
1 TTTTCAAAAATTATTAAGCTTCTAATAAAAAGAGCCTTTTAAAA
6647342 TTTTCAAA
1 TTTTCAAA
6647350 GTTATTGATA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
43 36 0.82
44 8 0.18
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.39
Consensus pattern (44 bp):
TTTTCAAAAATTATTAAGCTTCTAATAAAAAGAGCCTTTTAAAA
Found at i:6647355 original size:43 final size:44
Alignment explanation
Indices: 6647279--6647390 Score: 122
Period size: 43 Copynumber: 2.6 Consensus size: 44
6647269 TAAGTCTCTG
* * * *
6647279 ATAAAAAGAGCCTTTTAAAGTTTTAAAAATTATT-A-AGCTTCTA
1 ATAAGAAGAGCCTTTTAAAATTTTCAAAATTATTGATA-CTCCTA
* *
6647322 ATAAGATGAGCCTTTTAAAATTTTCAAAGTTATTGATACTCCTA
1 ATAAGAAGAGCCTTTTAAAATTTTCAAAATTATTGATACTCCTA
*
6647366 ATAAGAAGAG-CTTTTCTAAATTTTC
1 ATAAGAAGAGCCTTTT-AAAATTTTC
6647391 CCAAGTTTCA
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
43 34 0.59
44 23 0.40
45 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.11, T:0.38
Consensus pattern (44 bp):
ATAAGAAGAGCCTTTTAAAATTTTCAAAATTATTGATACTCCTA
Found at i:6647716 original size:9 final size:10
Alignment explanation
Indices: 6647695--6647760 Score: 118
Period size: 10 Copynumber: 6.8 Consensus size: 10
6647685 TTAAGTGTGT
6647695 AAAATTTTAA
1 AAAATTTTAA
6647705 AAAATTTT-A
1 AAAATTTTAA
6647714 AAAATTTTAA
1 AAAATTTTAA
6647724 AAAATTTT-A
1 AAAATTTTAA
6647733 AAAATTTTAA
1 AAAATTTTAA
6647743 AAAATTTTAA
1 AAAATTTTAA
6647753 AAAATTTT
1 AAAATTTT
6647761 TATATATATT
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
9 18 0.33
10 36 0.67
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:6647719 original size:19 final size:19
Alignment explanation
Indices: 6647695--6647760 Score: 123
Period size: 19 Copynumber: 3.4 Consensus size: 19
6647685 TTAAGTGTGT
6647695 AAAATTTTAAAAAATTTTA
1 AAAATTTTAAAAAATTTTA
6647714 AAAATTTTAAAAAATTTTA
1 AAAATTTTAAAAAATTTTA
6647733 AAAATTTTAAAAAATTTTAA
1 AAAATTTTAAAAAATTTT-A
6647753 AAAATTTT
1 AAAATTTT
6647761 TATATATATT
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
19 37 0.80
20 9 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AAAATTTTAAAAAATTTTA
Found at i:6647771 original size:12 final size:13
Alignment explanation
Indices: 6647756--6647792 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
6647746 ATTTTAAAAA
6647756 ATTTTTATAT-AT
1 ATTTTTATATAAT
6647768 ATTTTTATATAGAT
1 ATTTTTATATA-AT
6647782 ATTTTTA-ATAA
1 ATTTTTATATAA
6647793 AAATGTTGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 11 0.48
13 3 0.13
14 9 0.39
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (13 bp):
ATTTTTATATAAT
Found at i:6653631 original size:2 final size:2
Alignment explanation
Indices: 6653624--6653665 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
6653614 TGCCCCCGCA
6653624 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6653666 TTGTCTATGC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6656420 original size:10 final size:10
Alignment explanation
Indices: 6656405--6656433 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
6656395 TTTACATTCT
6656405 TGAGAAAATG
1 TGAGAAAATG
6656415 TGAGAAAATG
1 TGAGAAAATG
6656425 TGAGAAAAT
1 TGAGAAAAT
6656434 CATTAACTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.28, T:0.21
Consensus pattern (10 bp):
TGAGAAAATG
Found at i:6656690 original size:28 final size:28
Alignment explanation
Indices: 6656650--6656705 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
6656640 ATGCATAACT
6656650 AGTTGAGAGATTGGTAAAATAATTAAGG
1 AGTTGAGAGATTGGTAAAATAATTAAGG
* *
6656678 AGTTGTGAGATTGGTAAGATAATTAAGG
1 AGTTGAGAGATTGGTAAAATAATTAAGG
6656706 TAAAATATGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.30, T:0.30
Consensus pattern (28 bp):
AGTTGAGAGATTGGTAAAATAATTAAGG
Found at i:6663117 original size:30 final size:30
Alignment explanation
Indices: 6663068--6663146 Score: 90
Period size: 30 Copynumber: 2.6 Consensus size: 30
6663058 TAAGCTCTAA
* **
6663068 ATTT-TTTTCAAATCAATTAAATTTTTAAAT
1 ATTTATTTTC-AACCAATTAAATACTTAAAT
*
6663098 ATTTATTTTCAACCAATTAAATACTTATAT
1 ATTTATTTTCAACCAATTAAATACTTAAAT
6663128 ATTTATTTTC-ACTCAATTA
1 ATTTATTTTCAAC-CAATTA
6663147 GATCCTCAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
29 2 0.05
30 36 0.84
31 5 0.12
ACGTcount: A:0.38, C:0.11, G:0.00, T:0.51
Consensus pattern (30 bp):
ATTTATTTTCAACCAATTAAATACTTAAAT
Found at i:6668238 original size:23 final size:23
Alignment explanation
Indices: 6668207--6668266 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 23
6668197 TTTAATTAAT
*
6668207 TTATATAATAAAATTTTAAAATA
1 TTATTTAATAAAATTTTAAAATA
*
6668230 TTATTTAAT--AATTTTAAATTA
1 TTATTTAATAAAATTTTAAAATA
* * *
6668251 TAAATAAATAAAATTT
1 TTATTTAATAAAATTT
6668267 AACAATTTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 17 0.57
23 13 0.43
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (23 bp):
TTATTTAATAAAATTTTAAAATA
Found at i:6668261 original size:21 final size:20
Alignment explanation
Indices: 6668202--6668257 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
6668192 TTTAGTTTAA
*
6668202 TTAATTTATATAATAA-AATT
1 TTAAATTATA-AATAATAATT
* **
6668222 TTAAAATATTATTTAATAATT
1 TTAAATTA-TAAATAATAATT
6668243 TTAAATTATAAATAA
1 TTAAATTATAAATAA
6668258 ATAAAATTTA
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAAATTATAAATAATAATT
Found at i:6669619 original size:24 final size:25
Alignment explanation
Indices: 6669591--6669637 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
6669581 AAATCATATT
6669591 ACTATTG-TAATTAATCTTATCATC
1 ACTATTGTTAATTAATCTTATCATC
**
6669615 ACTATTGTTTTTTAATCTTATCA
1 ACTATTGTTAATTAATCTTATCA
6669638 ATCATCCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.30, C:0.15, G:0.04, T:0.51
Consensus pattern (25 bp):
ACTATTGTTAATTAATCTTATCATC
Found at i:6670754 original size:23 final size:24
Alignment explanation
Indices: 6670714--6670762 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 24
6670704 TCTACTCTCT
* *
6670714 TTTTTTGCAAAAGGAAAATCTATA
1 TTTTTTGCAAAAGCAAAATATATA
*
6670738 TTTTTTGGAAAA-CAAAATATATA
1 TTTTTTGCAAAAGCAAAATATATA
6670761 TT
1 TT
6670763 ATACATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (24 bp):
TTTTTTGCAAAAGCAAAATATATA
Found at i:6670944 original size:11 final size:10
Alignment explanation
Indices: 6670937--6670976 Score: 53
Period size: 11 Copynumber: 3.8 Consensus size: 10
6670927 CAAGAAAATC
6670937 AAAAGAAAAA
1 AAAAGAAAAA
*
6670947 AAAAAAGAAAA
1 AAAAGA-AAAA
6670958 AAAAGAAAAGA
1 AAAAGAAAA-A
6670969 AAAAGAAA
1 AAAAGAAA
6670977 GAGATAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAGAAAAA
Found at i:6670952 original size:12 final size:13
Alignment explanation
Indices: 6670937--6670972 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
6670927 CAAGAAAATC
6670937 AAAAGAAAAAAA-
1 AAAAGAAAAAAAG
6670949 AAAAGAAAAAAAAG
1 AAAAG-AAAAAAAG
6670963 AAAAGAAAAA
1 AAAAGAAAAA
6670973 GAAAGAGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.23
13 12 0.55
14 5 0.23
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (13 bp):
AAAAGAAAAAAAG
Found at i:6670959 original size:14 final size:14
Alignment explanation
Indices: 6670942--6670972 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
6670932 AAATCAAAAG
6670942 AAAAAAAAAAAGAA
1 AAAAAAAAAAAGAA
*
6670956 AAAAAAGAAAAGAA
1 AAAAAAAAAAAGAA
6670970 AAA
1 AAA
6670973 GAAAGAGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAGAA
Found at i:6670966 original size:20 final size:21
Alignment explanation
Indices: 6670928--6670976 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 21
6670918 AAGGCAACCC
6670928 AAGAAAATCAAAAGAAAAAAAAA
1 AAGAAAA--AAAAGAAAAAAAAA
*
6670951 AAGAAAAAAAAG-AAAAGAAA
1 AAGAAAAAAAAGAAAAAAAAA
6670971 AAGAAA
1 AAGAAA
6670977 GAGATAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 13 0.52
21 5 0.20
23 7 0.28
ACGTcount: A:0.84, C:0.02, G:0.12, T:0.02
Consensus pattern (21 bp):
AAGAAAAAAAAGAAAAAAAAA
Found at i:6675514 original size:4 final size:4
Alignment explanation
Indices: 6675505--6675529 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
6675495 AGTGAGAGGA
6675505 CAGG CAGG CAGG CAGG CAGG CAGG C
1 CAGG CAGG CAGG CAGG CAGG CAGG C
6675530 TGGTAGTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.28, G:0.48, T:0.00
Consensus pattern (4 bp):
CAGG
Found at i:6676590 original size:15 final size:14
Alignment explanation
Indices: 6676572--6676601 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
6676562 TGACAATAAA
6676572 AAAATTAAAAGTATT
1 AAAATTAAAA-TATT
6676587 AAAATTAAAATATT
1 AAAATTAAAATATT
6676601 A
1 A
6676602 TTTTAGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.33
Consensus pattern (14 bp):
AAAATTAAAATATT
Found at i:6681591 original size:30 final size:30
Alignment explanation
Indices: 6681555--6681612 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
6681545 AGTGATAGAT
*
6681555 TAAACACTTTGAGATAACATGTATGAATAA
1 TAAACACTATGAGATAACATGTATGAATAA
6681585 TAAACACTATGAGATAACATGTATGAAT
1 TAAACACTATGAGATAACATGTATGAAT
6681613 CTTAAAAGCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.29
Consensus pattern (30 bp):
TAAACACTATGAGATAACATGTATGAATAA
Found at i:6685128 original size:30 final size:30
Alignment explanation
Indices: 6685094--6685159 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
6685084 AATTCAAAGT
6685094 TCAATTGAAT-AAAAATAAATATTTAAAGA-C
1 TCAATTG-ATCAAAAATAAATATTTAAA-ATC
*
6685124 TCAATTGTTCAAAAATAAATATTTAAAATC
1 TCAATTGATCAAAAATAAATATTTAAAATC
6685154 TCAATT
1 TCAATT
6685160 AATTACAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
29 2 0.06
30 31 0.94
ACGTcount: A:0.52, C:0.09, G:0.05, T:0.35
Consensus pattern (30 bp):
TCAATTGATCAAAAATAAATATTTAAAATC
Found at i:6696589 original size:17 final size:18
Alignment explanation
Indices: 6696557--6696596 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
6696547 GAAAATCAAA
*
6696557 ATTTTTTCAGAGTATCAC
1 ATTTTTTCAGAATATCAC
*
6696575 ATTTTTTC-GAATATCAT
1 ATTTTTTCAGAATATCAC
6696592 ATTTT
1 ATTTT
6696597 CCCTAAGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.28, C:0.12, G:0.07, T:0.53
Consensus pattern (18 bp):
ATTTTTTCAGAATATCAC
Found at i:6696682 original size:12 final size:11
Alignment explanation
Indices: 6696663--6696696 Score: 52
Period size: 10 Copynumber: 3.1 Consensus size: 11
6696653 TAGATTTATA
6696663 ATTTAAAATTT
1 ATTTAAAATTT
6696674 ATATTAAAATTT
1 AT-TTAAAATTT
6696686 -TTTAAAATTT
1 ATTTAAAATTT
6696696 A
1 A
6696697 ACTATAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 9 0.43
11 3 0.14
12 9 0.43
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
ATTTAAAATTT
Found at i:6696717 original size:20 final size:19
Alignment explanation
Indices: 6696687--6696724 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
6696677 TTAAAATTTT
*
6696687 TTAAAATTTAACTATAATA
1 TTAAAATTTAAATATAATA
6696706 TTAAACATTTAAATATAAT
1 TTAAA-ATTTAAATATAAT
6696725 TTATGAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
TTAAAATTTAAATATAATA
Found at i:6698323 original size:2 final size:2
Alignment explanation
Indices: 6698316--6698390 Score: 150
Period size: 2 Copynumber: 37.5 Consensus size: 2
6698306 GTAATGAAAA
6698316 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
6698358 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT G
6698391 CATTTCTTGT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.00, C:0.00, G:0.51, T:0.49
Consensus pattern (2 bp):
GT
Found at i:6705384 original size:2 final size:2
Alignment explanation
Indices: 6705374--6705404 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
6705364 TGTGTGTGTG
*
6705374 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6705405 GCATTTCTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:6707274 original size:2 final size:2
Alignment explanation
Indices: 6707267--6707294 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6707257 TCTTATGTTC
6707267 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6707295 CTTTTGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6711282 original size:3 final size:3
Alignment explanation
Indices: 6711274--6711322 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
6711264 ACTGCCCCAG
*
6711274 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
6711322 T
1 T
6711323 TTCTGACAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:6712685 original size:12 final size:12
Alignment explanation
Indices: 6712670--6712720 Score: 57
Period size: 12 Copynumber: 4.0 Consensus size: 12
6712660 TTCGAAAGCA
*
6712670 TTTAAAAGTTTT
1 TTTAAAAATTTT
*
6712682 TTTAAAATTTTT
1 TTTAAAAATTTT
6712694 TTTAAAAATCTATT
1 TTTAAAAAT-T-TT
6712708 TTTAAAAACTTTT
1 TTTAAAAA-TTTT
6712721 AAAATGTTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
12 19 0.56
13 3 0.09
14 11 0.32
15 1 0.03
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (12 bp):
TTTAAAAATTTT
Found at i:6712696 original size:13 final size:13
Alignment explanation
Indices: 6712678--6712720 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
6712668 CATTTAAAAG
6712678 TTTTTTTAAAAT-
1 TTTTTTTAAAATC
6712690 TTTTTTTAAAAATC
1 TTTTTTT-AAAATC
* *
6712704 TATTTTTAAAAAC
1 TTTTTTTAAAATC
6712717 TTTT
1 TTTT
6712721 AAAATGTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
12 7 0.27
13 13 0.50
14 6 0.23
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (13 bp):
TTTTTTTAAAATC
Found at i:6712709 original size:14 final size:13
Alignment explanation
Indices: 6712670--6712715 Score: 51
Period size: 14 Copynumber: 3.6 Consensus size: 13
6712660 TTCGAAAGCA
*
6712670 TTTAAAAGTT-TT
1 TTTAAAAATTATT
*
6712682 TTT-AAAATTTTT
1 TTTAAAAATTATT
6712694 TTTAAAAATCTATT
1 TTTAAAAAT-TATT
6712708 TTTAAAAA
1 TTTAAAAA
6712716 CTTTTAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 5 0.17
12 8 0.28
13 5 0.17
14 11 0.38
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (13 bp):
TTTAAAAATTATT
Found at i:6720924 original size:15 final size:15
Alignment explanation
Indices: 6720904--6720958 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 15
6720894 TTTCAATTTC
6720904 AATTTTTATTTTTAT
1 AATTTTTATTTTTAT
*
6720919 AATTTTTTATTTTAAAT
1 AA-TTTTTATTTT-TAT
*
6720936 AA-TTTTATTTTTTT
1 AATTTTTATTTTTAT
*
6720950 ATTTTTTAT
1 AATTTTTAT
6720959 AATTTTTTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
14 2 0.06
15 17 0.52
16 10 0.30
17 4 0.12
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (15 bp):
AATTTTTATTTTTAT
Found at i:6720927 original size:16 final size:16
Alignment explanation
Indices: 6720906--6720951 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
6720896 TCAATTTCAA
6720906 TTTTTATTTTTATAAT
1 TTTTTATTTTTATAAT
*
6720922 TTTTTATTTTAAATAAT
1 TTTTTATTTT-TATAAT
6720939 TTTATT-TTTTTAT
1 TTT-TTATTTTTAT
6720952 TTTTTATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 12 0.46
17 12 0.46
18 2 0.08
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTTATTTTTATAAT
Found at i:6720951 original size:23 final size:23
Alignment explanation
Indices: 6720921--6720964 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
6720911 ATTTTTATAA
6720921 TTTTTTATTTTAAATAATTTTAT
1 TTTTTTATTTTAAATAATTTTAT
**
6720944 TTTTTTATTTTTTATAATTTT
1 TTTTTTATTTTAAATAATTTT
6720965 TTTATTTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTTATTTTAAATAATTTTAT
Found at i:6721309 original size:5 final size:5
Alignment explanation
Indices: 6721276--6721308 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
6721266 ATATACATAC
*
6721276 ATAAT ATAAT ATAAT ATAAT ATAAT ATATT ATA
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA
6721309 TAGCACAATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATAAT
Found at i:6723548 original size:2 final size:2
Alignment explanation
Indices: 6723541--6723577 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
6723531 GCCACAACTC
6723541 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6723578 TATTTTCAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:6726782 original size:24 final size:24
Alignment explanation
Indices: 6726754--6726870 Score: 60
Period size: 24 Copynumber: 5.2 Consensus size: 24
6726744 TAATCTGATC
6726754 TTTAAA-AATAATAATTTATTTATA
1 TTTAAATAATAATAA-TTATTTATA
* *
6726778 TTTAAATAATTATGATTA-TT-TA
1 TTTAAATAATAATAATTATTTATA
* *
6726800 --T-CAT-ATAATAATTATTTAAAA
1 TTTAAATAATAATAATTATTT-ATA
6726821 TTTAAATAA-AATTAA-TATTT-TA
1 TTTAAATAATAA-TAATTATTTATA
* *
6726843 TTT-ATTAATAATTAA-TATTTTTA
1 TTTAAATAATAA-TAATTATTTATA
6726866 TTTAA
1 TTTAA
6726871 TATGAAATAC
Statistics
Matches: 72, Mismatches: 9, Indels: 24
0.69 0.09 0.23
Matches are distributed among these distances:
18 8 0.11
19 4 0.06
20 1 0.01
21 5 0.07
22 17 0.24
23 8 0.11
24 19 0.26
25 10 0.14
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (24 bp):
TTTAAATAATAATAATTATTTATA
Found at i:6726843 original size:43 final size:41
Alignment explanation
Indices: 6726761--6726856 Score: 95
Period size: 43 Copynumber: 2.2 Consensus size: 41
6726751 ATCTTTAAAA
* * *
6726761 ATAATAATTTATTTATATTTAAATAATTATGATTATTTATCAT
1 ATAATAA-TTATTTAAATTTAAATAATAATGAATATTTAT-AT
* *
6726804 ATAATAATTATTTAAAATTTAAATAA-AATTAATATTTTATTT
1 ATAATAATTATTT-AAATTTAAATAATAATGAATA-TTTATAT
6726846 ATTAATAATTA
1 A-TAATAATTA
6726857 ATATTTTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 13 0.29
43 32 0.71
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (41 bp):
ATAATAATTATTTAAATTTAAATAATAATGAATATTTATAT
Found at i:6731397 original size:211 final size:211
Alignment explanation
Indices: 6731033--6731455 Score: 819
Period size: 211 Copynumber: 2.0 Consensus size: 211
6731023 TAAATTTAGA
*
6731033 CCATAGGAATAACCCTTAAGATCTTCCGGAGCAGAATAGAACTTTACATATTCTAAAGGAACCTC
1 CCATAGGAATAACCCTTAAGATCTTCCGCAGCAGAATAGAACTTTACATATTCTAAAGGAACCTC
*
6731098 GTTAACATTTATCCATAAGAAGTAAAGAACTGGCTTGGGGGTATTTGGGCTATTGTAGTATAAAC
66 GTTAACATTTATCCATAAGAAGTAAAGAACTGGCTTGGGGCTATTTGGGCTATTGTAGTATAAAC
6731163 CTAGTTTTTTAGATTCCATGACTAGGCTATAAGACCCCTCCGAATTGTCAACACTAGAGGTCCGA
131 CTAGTTTTTTAGATTCCATGACTAGGCTATAAGACCCCTCCGAATTGTCAACACTAGAGGTCCGA
6731228 CATACAAGCTTGGTTC
196 CATACAAGCTTGGTTC
*
6731244 CCATAGGAATAACCCTTAAGATCTTCCGCAGCAGAATAGAACTTTACATATTCTAAAGGACCCTC
1 CCATAGGAATAACCCTTAAGATCTTCCGCAGCAGAATAGAACTTTACATATTCTAAAGGAACCTC
6731309 GTTAACATTTATCCATAAGAAGTAAAGAACTGGCTTGGGGCTATTTGGGCTATTGTAGTATAAAC
66 GTTAACATTTATCCATAAGAAGTAAAGAACTGGCTTGGGGCTATTTGGGCTATTGTAGTATAAAC
6731374 CTAGTTTTTTAGATTCCATGACTAGGCTATAAGACCCCTCCGAATTGTCAACACTAGAGGTCCGA
131 CTAGTTTTTTAGATTCCATGACTAGGCTATAAGACCCCTCCGAATTGTCAACACTAGAGGTCCGA
6731439 CATACAAGCTTGGTTC
196 CATACAAGCTTGGTTC
6731455 C
1 C
6731456 AGCACCAAGC
Statistics
Matches: 209, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
211 209 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (211 bp):
CCATAGGAATAACCCTTAAGATCTTCCGCAGCAGAATAGAACTTTACATATTCTAAAGGAACCTC
GTTAACATTTATCCATAAGAAGTAAAGAACTGGCTTGGGGCTATTTGGGCTATTGTAGTATAAAC
CTAGTTTTTTAGATTCCATGACTAGGCTATAAGACCCCTCCGAATTGTCAACACTAGAGGTCCGA
CATACAAGCTTGGTTC
Found at i:6734845 original size:52 final size:52
Alignment explanation
Indices: 6734755--6734889 Score: 173
Period size: 52 Copynumber: 2.6 Consensus size: 52
6734745 CTTATAAAAT
* * * *
6734755 AAGAATTCTAAGAGAAAAATGGATTCTTAATAGGTAAGTTTGACTTACA-AGAG
1 AAGAATTATAAGAGAAAAA-AGATTCTTAATAGATAAGTTTGACTTACAGA-AA
*
6734808 AAGAGTTATAAGAGAAAAAAGATTCTTAATAGATAAGTTTGACTTACAGAAA
1 AAGAATTATAAGAGAAAAAAGATTCTTAATAGATAAGTTTGACTTACAGAAA
* * *
6734860 AAGAATTATAAGAGGAGAGAGATTCTTAAT
1 AAGAATTATAAGAGAAAAAAGATTCTTAAT
6734890 GAGCAAGTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
52 54 0.75
53 18 0.25
ACGTcount: A:0.47, C:0.06, G:0.20, T:0.27
Consensus pattern (52 bp):
AAGAATTATAAGAGAAAAAAGATTCTTAATAGATAAGTTTGACTTACAGAAA
Found at i:6741693 original size:17 final size:17
Alignment explanation
Indices: 6741648--6741686 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
6741638 TTGTATCCCA
6741648 TGCATAAAATATGTTAG
1 TGCATAAAATATGTTAG
6741665 TGCATAAAATATGTTAG
1 TGCATAAAATATGTTAG
6741682 TGCAT
1 TGCAT
6741687 CTCATATAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (17 bp):
TGCATAAAATATGTTAG
Found at i:6743884 original size:22 final size:23
Alignment explanation
Indices: 6743859--6743906 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 23
6743849 TCAGATGTTA
6743859 AAAAAAAAAAAGAAG-AAA-AAAG
1 AAAAAAAAAAAG-AGTAAAGAAAG
6743881 AAAAAAAAAAAGAGTAAAGAAAG
1 AAAAAAAAAAAGAGTAAAGAAAG
6743904 AAA
1 AAA
6743907 GATATGTACC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 2 0.08
22 15 0.62
23 7 0.29
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (23 bp):
AAAAAAAAAAAGAGTAAAGAAAG
Found at i:6743899 original size:19 final size:20
Alignment explanation
Indices: 6743857--6743902 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
6743847 AGTCAGATGT
6743857 TAAA-AAAAAAAAAGAAGAA
1 TAAAGAAAAAAAAAGAAGAA
* *
6743876 AAAAGAAAAAAAAA-AAGAG
1 TAAAGAAAAAAAAAGAAGAA
6743895 TAAAGAAA
1 TAAAGAAA
6743903 GAAAGATATG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (20 bp):
TAAAGAAAAAAAAAGAAGAA
Found at i:6750394 original size:357 final size:356
Alignment explanation
Indices: 6749488--6751076 Score: 1887
Period size: 357 Copynumber: 4.5 Consensus size: 356
6749478 AAGGCATTTT
* * *
6749488 ATAATAAAAGATGCCTTTAATAATC--CAAAATTTTTTTAAAAAAAAAATTATTGAAGGCATTGT
1 ATAATAAAAGACGCCTTTAATAATCTGAAAAATTTTTTT---AGAAAAATTATTGAAGGCATTGT
* * * * * *
6749551 TATCTGCAATCGCTTTTAGTAATTATATACAAATTGTGATAGGAATTATTAAAAGCGTCTTTCTT
63 TATCTGCAATCGCCTTCAGTAATTATATACAAACTGTGATAGAAATTATTAAAGGCATCTTTCTT
* * * * * *
6749616 GGATATATGCTTTCAATAACAGTGTTAGAATTTGTGTG-CAGTATATAGAAGGTATTTTACAGTA
128 GGATATACGCCTTCAATAATAGTGTTAAAATTTGTGTGACGGTATATAAAAGGTATTTTACAGTA
* * * ** *
6749680 GAATACACCTTTAATAATTTTCAAAATATTTAGTGAGAAAATTTTGAAGATGTCTGTTATTAACA
193 GAAGACACCTTTAATAATTTTCAAAATTTTTAGTGAAAAAATTTTGAAGGCGTCTATTATTAACA
* * * * * *
6749745 AATGCCTTCAGTACTAGATTATTAAGTTTAAAAGTATATTGAATGTGCCTTTTCGAATAAACACC
258 AATGCCTTCAGTAATGGATTACTAAGTTTAAAAGTATATTGAAGGTGCCTTTTTGAATAAACGCC
*
6749810 TTCTATAATCATCGTGGTATATTGAAGGCCTGTC
323 TTCTATAACCATCGTGGTATATTGAAGGCCTGTC
* * ** * **
6749844 ATAATAAAATACGCCTTCAATAATCCAAAAAAATTTTTTAGAAAAATTATTGAAGGTGTTGTTAT
1 ATAATAAAAGACGCCTTTAATAATCTGAAAAATTTTTTTAGAAAAATTATTGAAGGCATTGTTAT
* * * * * *
6749909 CTGCAACCACCTTCAGTAATTATCTATAAACTGTGATAGAAATTATTAAAGGCATATTTTTTGGA
66 CTGCAATCGCCTTCAGTAATTATATACAAACTGTGATAGAAATTATTAAAGGCATCTTTCTTGGA
* * *
6749974 TATACACCTTCAATAACAGTGTTAAAATTTGTGTGATGGTATATAAAAGGTATTTTACAGTAGAA
131 TATACGCCTTCAATAATAGTGTTAAAATTTGTGTGACGGTATATAAAAGGTATTTTACAGTAGAA
** *
6750039 GATGCCTTTAATAATTCTCAAAATTTTTAGTGAAAAAATTTTGAAGGCGTCTATTATTAACAAAT
196 GACACCTTTAATAATTTTCAAAATTTTTAGTGAAAAAATTTTGAAGGCGTCTATTATTAACAAAT
* *
6750104 GCCTTCAGTAATGGATTACTAAGTTTAAAAGTATATTGAA-G-GCACTTTTTCTAATAAATGCCT
261 GCCTTCAGTAATGGATTACTAAGTTTAAAAGTATATTGAAGGTGC-CTTTTT-GAATAAACGCC-
*
6750167 TTCGT-T-ACCATCGTGGTATATTAAAGGCCTGTC
323 TTC-TATAACCATCGTGGTATATTGAAGGCCTGTC
** * * * *
6750200 ATAATAAAAGATACCTTTAATAATCTGAAATAATTTTTTTAAAAAAATTATTAAAAGCTTTGTTA
1 ATAATAAAAGACGCCTTTAATAATCTGAAA-AATTTTTTTAGAAAAATTATTGAAGGCATTGTTA
* * * *
6750265 TCTGTAATCACCTTCAGTAATTATCTACAAACTGTGATAAAAATTATTAAAGGCATCTTTCTTGG
65 TCTGCAATCGCCTTCAGTAATTATATACAAACTGTGATAGAAATTATTAAAGGCATCTTTCTTGG
* * *
6750330 ATATATGCCTTCAATAATGGTGTTAAAATTTGTGT-AGCGGTATATAAAATGTATTTTACAGTAG
130 ATATACGCCTTCAATAATAGTGTTAAAATTTGTGTGA-CGGTATATAAAAGGTATTTTACAGTAG
* * ** * * * * * *
6750394 AATAAATGTTTAATAA-TTTCTAAAATTTTTAGTGAGAAACTTTTAAAGGTGTCTGTTATTAATA
194 AAGACACCTTTAATAATTTTC-AAAATTTTTAGTGAAAAAATTTTGAAGGCGTCTATTATTAACA
** * * * *
6750458 AACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTTTTTTAATAAATGCT
258 AATGCCTTCAGTAATGGATTACTAAGTTTAAAAGTATATTGAAGGTGCCTTTTTGAATAAACGCC
* *
6750523 TTCTATTACCATCGTGGTATATTGAATG--TGTC
323 TTCTATAACCATCGTGGTATATTGAAGGCCTGTC
*
6750555 ATAATAAAAGACGCCTTTAATAATTTGAGAAAATTTTTTT-GAAAAATTATTGAAGGCATTGTTA
1 ATAATAAAAGACGCCTTTAATAATCTGA-AAAATTTTTTTAGAAAAATTATTGAAGGCATTGTTA
* * * * *
6750619 TCTGCAATTGCATTTAGTAATTATATACAAACTGTGTTAGAAATTATTAAATGCATCTTTCTTGG
65 TCTGCAATCGCCTTCAGTAATTATATACAAACTGTGATAGAAATTATTAAAGGCATCTTTCTTGG
* * * * *
6750684 ATACACGCCTTCAATAATAGTGTTAGAATTTTTGTGACGGTATATAGAAGGCATTTTACAGTAGA
130 ATATACGCCTTCAATAATAGTGTTAAAATTTGTGTGACGGTATATAAAAGGTATTTTACAGTAGA
* ** * * *
6750749 AGACACCTTTAATAATTTTTAAAATTTTTAGTGAAAATTTTTTCAAAGCATCTATTATTAACAAA
195 AGACACCTTTAATAATTTTCAAAATTTTTAGTGAAAAAATTTTGAAGGCGTCTATTATTAACAAA
* **
6750814 TGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTAACTTTTTGAATAAACGCCTT
260 TGCCTTCAGTAATGGATTACTAAGTTTAAAAGTATATTGAAGGTGCCTTTTTGAATAAACGCCTT
*
6750879 CTATAACCATCGTGGTATATTGAAGGCATGTC
325 CTATAACCATCGTGGTATATTGAAGGCCTGTC
* * * * * *
6750911 ATAATAAAAAACACATTTACTAAT-TCGAAAAATTTTTTTTAGGAAAATTATTGAAGGCGTTGTT
1 ATAATAAAAGACGCCTTTAATAATCT-GAAAAA-TTTTTTTAGAAAAATTATTGAAGGCATTGTT
* * * **
6750975 TTCTGCAA-CTGCCTTCACTAATTATATACAAACAGTGATA-AGAATTATTAAAGGTGTCTTTCT
64 ATCTGCAATC-GCCTTCAGTAATTATATACAAACTGTGATAGA-AATTATTAAAGGCATCTTTCT
* *
6751038 TGGATATACGCCATCATTAACT-GTGTTAAAATTTGTGTG
127 TGGATATACGCCTTCAATAA-TAGTGTTAAAATTTGTGTG
6751077 GCGATATGTT
Statistics
Matches: 1053, Mismatches: 155, Indels: 49
0.84 0.12 0.04
Matches are distributed among these distances:
354 262 0.25
355 161 0.15
356 242 0.23
357 367 0.35
358 19 0.02
359 2 0.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.38
Consensus pattern (356 bp):
ATAATAAAAGACGCCTTTAATAATCTGAAAAATTTTTTTAGAAAAATTATTGAAGGCATTGTTAT
CTGCAATCGCCTTCAGTAATTATATACAAACTGTGATAGAAATTATTAAAGGCATCTTTCTTGGA
TATACGCCTTCAATAATAGTGTTAAAATTTGTGTGACGGTATATAAAAGGTATTTTACAGTAGAA
GACACCTTTAATAATTTTCAAAATTTTTAGTGAAAAAATTTTGAAGGCGTCTATTATTAACAAAT
GCCTTCAGTAATGGATTACTAAGTTTAAAAGTATATTGAAGGTGCCTTTTTGAATAAACGCCTTC
TATAACCATCGTGGTATATTGAAGGCCTGTC
Found at i:6750851 original size:711 final size:709
Alignment explanation
Indices: 6749478--6751076 Score: 2064
Period size: 711 Copynumber: 2.2 Consensus size: 709
6749468 CAAATTACTG
* * * *
6749478 AAGGCATTTTATAATAAAAGATGCCTTTAATAATC--CAAAATTTTTTTAAAAAAAAAATTATTG
1 AAGGCATGTCATAATAAAAGATACCTTTAATAATCTGAAAAATTTTTTT---AAAAAAATTATTG
* * * * *
6749541 AAGGCATTGTTATCTGCAATCGCTTTTAGTAATTATATACAAATTGTGATAGGAATTATTAAAAG
63 AAGGCATTGTTATCTGCAATCGCCTTCAGTAATTATATACAAACTGTGATAAGAATTATTAAAGG
* * * *
6749606 CGTCTTTCTTGGATATATGCTTTCAATAACAGTGTTAGAATTTGTGTGCAGTATATAGAAGGTAT
128 CGTCTTTCTTGGATATATGCCTTCAATAA-TGTGTTAAAATTTGTGTGCAGTATATAAAAGGTAT
* *
6749671 TTTACAGTAGAATACACCTTTAATAATTTTCAAAATATTTAGTGAGAAAATTTTGAAGATGTCTG
192 TTTACAGTAGAATAAACCTTTAATAATTTTCAAAATATTTAGTGAGAAAATTTTAAAGATGTCTG
** * * *
6749736 TTATTAACAAATGCCTTCAGTACTAGATTATTAAGTTTAAAAGTATATTGAATGTGCCTTTTCGA
257 TTATTAACAAACACCTTCAGTAATAGATTACTAAGTTTAAAAGTATATTGAAGGTGCCTTTTCGA
* *
6749801 ATAAACACCTTCTATAATCATCGTGGTATATTGAAGGCCTGTCATAATAAAATACGCCTTCAATA
322 ATAAACACCTTCTATAACCATCGTGGTATATTGAAGG-CTGTCATAATAAAAGACGCCTTCAATA
** *
6749866 ATCCAAAAAAATTTTTTAGAAAAATTATTGAAGGTGTTGTTATCTGCAACCACCTTCAGTAATTA
386 ATCCAAAAAAATTTTTTAGAAAAATTATTGAAGGCATTGTTATCTGCAACCACATTCAGTAATTA
* * * *
6749931 TCTATAAACTGTGATAGAAATTATTAAAGGCATATTTTTTGGATATACACCTTCAATAACAGTGT
451 TATACAAACTGTGATAGAAATTATTAAAGGCATATTTCTTGGATACACACCTTCAATAACAGTGT
* * **
6749996 TAAAATTTGTGTGATGGTATATAAAAGGTATTTTACAGTAGAAGATGCCTTTAATAATTCTCAAA
516 TAAAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTAGAAGACACCTTTAATAATTCTCAAA
* * *
6750061 ATTTTTAGTGAAAAAATTTTGAAGGCGTCTATTATTAACAAATGCCTTCAGTAATGGATTACTAA
581 ATTTTTAGTGAAAAAATTTTCAAAGCATCTATTATTAACAAATGCCTTCAGTAATGGATTACTAA
* * *
6750126 GTTTAAAAGTATATTGAAGG-CACTTTTTCTAATAAATGCCTTTCGT-T-ACCATCGTGGTATAT
646 GTTTAAAAGTATATTGAAGGTAACTTTTT-GAATAAACGCC-TTC-TATAACCATCGTGGTATAT
6750188 TA
708 TA
* *
6750190 AAGGCCTGTCATAATAAAAGATACCTTTAATAATCTGAAATAATTTTTTTAAAAAAATTATTAAA
1 AAGGCATGTCATAATAAAAGATACCTTTAATAATCTGAAA-AATTTTTTTAAAAAAATTATTGAA
* * * * * * *
6750255 AGCTTTGTTATCTGTAATCACCTTCAGTAATTATCTACAAACTGTGATAAAAATTATTAAAGGCA
65 GGCATTGTTATCTGCAATCGCCTTCAGTAATTATATACAAACTGTGATAAGAATTATTAAAGGCG
* *
6750320 TCTTTCTTGGATATATGCCTTCAATAATGGTGTTAAAATTTGTGTAGCGGTATATAAAATGTATT
130 TCTTTCTTGGATATATGCCTTCAATAAT-GTGTTAAAATTTGTGT-GCAGTATATAAAAGGTATT
** * * *
6750385 TTACAGTAGAATAAATGTTTAATAA-TTTCTAAAATTTTTAGTGAGAAACTTTTAAAGGTGTCTG
193 TTACAGTAGAATAAACCTTTAATAATTTTC-AAAATATTTAGTGAGAAAATTTTAAAGATGTCTG
* * * **
6750449 TTATTAATAAACACCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTTTTTTA
257 TTATTAACAAACACCTTCAGTAATAGATTACTAAGTTTAAAAGTATATTGAAGGTGCCTTTTCGA
** * * * *
6750514 ATAAATGCTTTCTATTACCATCGTGGTATATTGAATG-TGTCATAATAAAAGACGCCTTTAATAA
322 ATAAACACCTTCTATAACCATCGTGGTATATTGAAGGCTGTCATAATAAAAGACGCCTTCAATAA
*** * * *** *
6750578 TTTGAGAAAATTTTTTTGAAAAATTATTGAAGGCATTGTTATCTGCAATTGCATTTAGTAATTAT
387 TCCAAAAAAATTTTTTAGAAAAATTATTGAAGGCATTGTTATCTGCAACCACATTCAGTAATTAT
* * * * *
6750643 ATACAAACTGTGTTAGAAATTATTAAATGCATCTTTCTTGGATACACGCCTTCAATAATAGTGTT
452 ATACAAACTGTGATAGAAATTATTAAAGGCATATTTCTTGGATACACACCTTCAATAACAGTGTT
* * * * *
6750708 AGAATTTTTGTGACGGTATATAGAAGGCATTTTACAGTAGAAGACACCTTTAATAATTTTTAAAA
517 AAAATTTGTGTGACGGTATATAAAAGGCATTTTACAGTAGAAGACACCTTTAATAATTCTCAAAA
**
6750773 TTTTTAGTGAAAATTTTTTCAAAGCATCTATTATTAACAAATGCCTTCAGTAATGGATTACTAAG
582 TTTTTAGTGAAAAAATTTTCAAAGCATCTATTATTAACAAATGCCTTCAGTAATGGATTACTAAG
* *
6750838 TTTAAAGGTATATTGAAGGTAACTTTTTGAATAAACGCCTTCTATAACCATCGTGGTATATTG
647 TTTAAAAGTATATTGAAGGTAACTTTTTGAATAAACGCCTTCTATAACCATCGTGGTATATTA
* * * * **
6750901 AAGGCATGTCATAATAAAAAACACATTTACTAAT-TCGAAAAATTTTTTTTAGGAAAATTATTGA
1 AAGGCATGTCATAATAAAAGATACCTTTAATAATCT-GAAAAA-TTTTTTTAAAAAAATTATTGA
* * * *
6750965 AGGCGTTGTTTTCTGCAA-CTGCCTTCACTAATTATATACAAACAGTGATAAGAATTATTAAAGG
64 AGGCATTGTTATCTGCAATC-GCCTTCAGTAATTATATACAAACTGTGATAAGAATTATTAAAGG
* * * *
6751029 TGTCTTTCTTGGATATACGCCATCATTAACTGTGTTAAAATTTGTGTG
128 CGTCTTTCTTGGATATATGCCTTCAATAA-TGTGTTAAAATTTGTGTG
6751077 GCGATATGTT
Statistics
Matches: 763, Mismatches: 111, Indels: 28
0.85 0.12 0.03
Matches are distributed among these distances:
709 1 0.00
710 9 0.01
711 437 0.57
712 151 0.20
713 154 0.20
714 2 0.00
715 9 0.01
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.38
Consensus pattern (709 bp):
AAGGCATGTCATAATAAAAGATACCTTTAATAATCTGAAAAATTTTTTTAAAAAAATTATTGAAG
GCATTGTTATCTGCAATCGCCTTCAGTAATTATATACAAACTGTGATAAGAATTATTAAAGGCGT
CTTTCTTGGATATATGCCTTCAATAATGTGTTAAAATTTGTGTGCAGTATATAAAAGGTATTTTA
CAGTAGAATAAACCTTTAATAATTTTCAAAATATTTAGTGAGAAAATTTTAAAGATGTCTGTTAT
TAACAAACACCTTCAGTAATAGATTACTAAGTTTAAAAGTATATTGAAGGTGCCTTTTCGAATAA
ACACCTTCTATAACCATCGTGGTATATTGAAGGCTGTCATAATAAAAGACGCCTTCAATAATCCA
AAAAAATTTTTTAGAAAAATTATTGAAGGCATTGTTATCTGCAACCACATTCAGTAATTATATAC
AAACTGTGATAGAAATTATTAAAGGCATATTTCTTGGATACACACCTTCAATAACAGTGTTAAAA
TTTGTGTGACGGTATATAAAAGGCATTTTACAGTAGAAGACACCTTTAATAATTCTCAAAATTTT
TAGTGAAAAAATTTTCAAAGCATCTATTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTA
AAAGTATATTGAAGGTAACTTTTTGAATAAACGCCTTCTATAACCATCGTGGTATATTA
Found at i:6762648 original size:17 final size:17
Alignment explanation
Indices: 6762620--6762652 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
6762610 CCTAATATAT
6762620 ATGCTCTATTAAGTTAAG
1 ATGCTCTATTAA-TTAAG
6762638 ATGCT-TATTAATTAA
1 ATGCTCTATTAATTAA
6762653 TTAGCTAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 6 0.40
18 5 0.33
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.42
Consensus pattern (17 bp):
ATGCTCTATTAATTAAG
Found at i:6763808 original size:30 final size:31
Alignment explanation
Indices: 6763774--6763859 Score: 90
Period size: 30 Copynumber: 2.8 Consensus size: 31
6763764 TTTGACATTC
6763774 AATTTGTACTTAAATAAAATTTTAACT-TTT
1 AATTTGTACTTAAATAAAATTTTAACTATTT
****
6763804 AATTTGTA-TTCAAATAACGCATTAA-TATTT
1 AATTTGTACTT-AAATAAAATTTTAACTATTT
6763834 AATTTGTACTTAAAT-AAATCTTTAAC
1 AATTTGTACTTAAATAAAAT-TTTAAC
6763860 ATAAATTTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
29 4 0.09
30 37 0.86
31 2 0.05
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (31 bp):
AATTTGTACTTAAATAAAATTTTAACTATTT
Found at i:6763928 original size:20 final size:20
Alignment explanation
Indices: 6763881--6763928 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
6763871 TTTTATTTAA
6763881 AATAAATATTTATTTGAATAC
1 AATAAA-ATTTATTTGAATAC
* *
6763902 AAAAAAATTTATTTGAATAT
1 AATAAAATTTATTTGAATAC
6763922 AATAAAA
1 AATAAAA
6763929 GTATAAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (20 bp):
AATAAAATTTATTTGAATAC
Found at i:6764855 original size:16 final size:17
Alignment explanation
Indices: 6764829--6764907 Score: 67
Period size: 16 Copynumber: 4.6 Consensus size: 17
6764819 ATATAATTTA
6764829 TATTATTATATAAAAAT
1 TATTATTATATAAAAAT
**
6764846 TATT-TTATATTTAAAT
1 TATTATTATATAAAAAT
*
6764862 TATATATTATAT--ACAT
1 TAT-TATTATATAAAAAT
6764878 TA-TATTATATAAATAAAT
1 TATTATTATAT-AA-AAAT
6764896 TATATATTATAT
1 TAT-TATTATAT
6764908 TATATTATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
14 8 0.16
16 18 0.36
17 5 0.10
18 11 0.22
20 8 0.16
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (17 bp):
TATTATTATATAAAAAT
Found at i:6764856 original size:21 final size:22
Alignment explanation
Indices: 6764802--6764856 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 22
6764792 TGGTTTGTTC
6764802 AATTTTA-ATTATTAAAAATAT
1 AATTTTATATTATTAAAAATAT
6764823 AATTTATATTATTATATAAAAAT-T
1 AATTT-TA-TATTAT-TAAAAATAT
6764847 -ATTTTATATT
1 AATTTTATATT
6764857 TAAATTATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
21 9 0.30
22 4 0.13
23 4 0.13
24 6 0.20
25 7 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (22 bp):
AATTTTATATTATTAAAAATAT
Found at i:6764865 original size:25 final size:25
Alignment explanation
Indices: 6764805--6764865 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
6764795 TTTGTTCAAT
6764805 TTTAATTATTAAAAATATAATTTATA
1 TTTAATTA-TAAAAATATAATTTATA
* *
6764831 -TTATTATATAAAAAT-TATTTTATA
1 TTTAAT-TATAAAAATATAATTTATA
6764855 TTTAAATTATA
1 TTT-AATTATA
6764866 TATTATATAC
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
24 8 0.28
25 17 0.59
26 4 0.14
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
TTTAATTATAAAAATATAATTTATA
Found at i:6765469 original size:29 final size:29
Alignment explanation
Indices: 6765403--6765469 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
6765393 ATTTAAATAG
*
6765403 ACACAAATAAATATGAATAATAAGGATAT
1 ACACAAATAAATATGAATAACAAGGATAT
* * **
6765432 ATA-AGAATAAATATGACTAACATTGATAT
1 ACACA-AATAAATATGAATAACAAGGATAT
6765461 ACACAAATA
1 ACACAAATA
6765470 GACACGATTA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
28 1 0.03
29 28 0.93
30 1 0.03
ACGTcount: A:0.57, C:0.09, G:0.09, T:0.25
Consensus pattern (29 bp):
ACACAAATAAATATGAATAACAAGGATAT
Found at i:6766716 original size:23 final size:21
Alignment explanation
Indices: 6766683--6766730 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
6766673 TTCTTTAATT
6766683 ATTT-TTTATTATATTATGATA
1 ATTTATTTATTATATTATGA-A
*
6766704 ATTTATTTAATTATTTTATGAA
1 ATTTATTT-ATTATATTATGAA
6766726 ATTTA
1 ATTTA
6766731 AAATAGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 9 0.38
23 11 0.46
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (21 bp):
ATTTATTTATTATATTATGAA
Found at i:6767549 original size:23 final size:23
Alignment explanation
Indices: 6767506--6767549 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
6767496 TAAGATTATA
**
6767506 TTAAATAAAAATAAATTATATTT
1 TTAAATAAAAATAAAACATATTT
6767529 TTAAA-AAAAATAAAAACATAT
1 TTAAATAAAAAT-AAAACATAT
6767550 ATATTATTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (23 bp):
TTAAATAAAAATAAAACATATTT
Found at i:6768316 original size:24 final size:23
Alignment explanation
Indices: 6768268--6768316 Score: 55
Period size: 24 Copynumber: 2.0 Consensus size: 23
6768258 GAATAAATTT
6768268 AAAATTATTTAATTTTTAATTAAA
1 AAAATTATTTAATTTTTAA-TAAA
*
6768292 AAAATTATCTTACTATTTTAA-AAA
1 AAAATTAT-TTAAT-TTTTAATAAA
6768316 A
1 A
6768317 CTAACTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
24 12 0.55
25 4 0.18
26 6 0.27
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (23 bp):
AAAATTATTTAATTTTTAATAAA
Found at i:6768528 original size:18 final size:19
Alignment explanation
Indices: 6768505--6768540 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
6768495 CTGTTTTTTT
6768505 CTAATAAATT-AATTAAAA
1 CTAATAAATTAAATTAAAA
6768523 CTAATAAATTAAATTAAA
1 CTAATAAATTAAATTAAA
6768541 TTAATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (19 bp):
CTAATAAATTAAATTAAAA
Found at i:6772200 original size:29 final size:30
Alignment explanation
Indices: 6772145--6772201 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
6772135 ATTTTTATCG
**
6772145 AAAATTTTTTCATCAAAAATTGTTTCACTT
1 AAAATTTTTTCATCAAAAATTACTTCACTT
6772175 AAAATTATTTT-A-CAAAAATTACTTCAC
1 AAAATT-TTTTCATCAAAAATTACTTCAC
6772202 CGAATTAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 13 0.54
30 7 0.29
31 4 0.17
ACGTcount: A:0.42, C:0.14, G:0.02, T:0.42
Consensus pattern (30 bp):
AAAATTTTTTCATCAAAAATTACTTCACTT
Found at i:6780302 original size:34 final size:33
Alignment explanation
Indices: 6780263--6780333 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 33
6780253 ATGTTGTGTG
6780263 TCACGTCAAATCTGATCCACAATGTTTGACCTT
1 TCACGTCAAATCTGATCCACAATGTTTGACCTT
*
6780296 ATCACGTCAGATCTGATCCACAATGTTTGACCTT
1 -TCACGTCAAATCTGATCCACAATGTTTGACCTT
6780330 TCAC
1 TCAC
6780334 CATAAAATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
33 4 0.11
34 32 0.89
ACGTcount: A:0.27, C:0.28, G:0.13, T:0.32
Consensus pattern (33 bp):
TCACGTCAAATCTGATCCACAATGTTTGACCTT
Found at i:6782328 original size:22 final size:22
Alignment explanation
Indices: 6782303--6782344 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
6782293 TTTATAAATT
6782303 ATTTAAATTTAATTTAATTAAA
1 ATTTAAATTTAATTTAATTAAA
*
6782325 ATTTAAATTTAATTTGATTA
1 ATTTAAATTTAATTTAATTA
6782345 TTATCGAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
ATTTAAATTTAATTTAATTAAA
Found at i:6782338 original size:17 final size:16
Alignment explanation
Indices: 6782281--6782335 Score: 58
Period size: 17 Copynumber: 3.4 Consensus size: 16
6782271 AAATGTAAAT
*
6782281 AATTTATTAATATTTA
1 AATTTATTAAAATTTA
* *
6782297 TAAATTATTTAAATTT-
1 -AATTTATTAAAATTTA
6782313 AATTTAATTAAAATTTA
1 AATTT-ATTAAAATTTA
6782330 AATTTA
1 AATTTA
6782336 ATTTGATTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
15 4 0.13
16 10 0.32
17 17 0.55
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTTATTAAAATTTA
Found at i:6783051 original size:23 final size:21
Alignment explanation
Indices: 6782997--6783067 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
6782987 CTTGATTTTA
*
6782997 ATTTTAA-AATATATTTAAAAT
1 ATTTTAATATTATATTT-AAAT
*
6783018 ATTTGAATATTAATATTTAAAT
1 ATTTTAATATT-ATATTTAAAT
* *
6783040 ATTTTAACTATTTTA-TTATAT
1 ATTTTAA-TATTATATTTAAAT
6783061 ATTTTAA
1 ATTTTAA
6783068 AAAAATCAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
21 18 0.43
22 14 0.33
23 10 0.24
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (21 bp):
ATTTTAATATTATATTTAAAT
Found at i:6783382 original size:31 final size:31
Alignment explanation
Indices: 6783347--6783417 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 31
6783337 GAATGCTTTC
* * *
6783347 TAAATTATAAAAAAATATTTAATGTGATATT
1 TAAATTATAAAAAAATATATAATATGATATA
*
6783378 TAAATT-T-TAAAAATATATAATATGATATA
1 TAAATTATAAAAAAATATATAATATGATATA
6783407 TAAATTATAAA
1 TAAATTATAAA
6783418 TTTATTAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
29 24 0.73
30 2 0.06
31 7 0.21
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (31 bp):
TAAATTATAAAAAAATATATAATATGATATA
Found at i:6784701 original size:22 final size:22
Alignment explanation
Indices: 6784672--6784738 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
6784662 TATTTGGATT
6784672 ATTTAAAATTTAAATTATTTAA
1 ATTTAAAATTTAAATTATTTAA
* *
6784694 TTTTAAAA-TTAAATCAATTTAA
1 ATTTAAAATTTAAAT-TATTTAA
*
6784716 ATTTAAGTAATTTTAATT-TTTAA
1 ATTTAA--AATTTAAATTATTTAA
6784739 CTTTCTTTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
21 6 0.17
22 18 0.50
23 5 0.14
24 2 0.06
25 5 0.14
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (22 bp):
ATTTAAAATTTAAATTATTTAA
Found at i:6787493 original size:2 final size:2
Alignment explanation
Indices: 6787486--6787510 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6787476 TTAATAAATC
6787486 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
6787511 AACAAATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6789079 original size:81 final size:82
Alignment explanation
Indices: 6788982--6789138 Score: 282
Period size: 81 Copynumber: 1.9 Consensus size: 82
6788972 ATATAAATAA
6788982 ATATATATATATATGTTTGACTATAAAATGCTTTTCCATTATTTTGTTTCAAAGT-A-ACAAGTT
1 ATATATATATATATGTTTGACTATAAAATGC-TTTCCATTATTTTGTTTCAAAGTAACACAAGTT
*
6789045 GGTTATCATGATATATAT
65 GCTTATCATGATATATAT
6789063 ATATATATATATATGTTTGACTATAAAATGCTTTCCATTATTTTGTTTCAAAGTAACACAAGTTG
1 ATATATATATATATGTTTGACTATAAAATGCTTTCCATTATTTTGTTTCAAAGTAACACAAGTTG
6789128 CTTATCATGAT
66 CTTATCATGAT
6789139 CGGCATATCT
Statistics
Matches: 73, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
80 23 0.32
81 32 0.44
82 18 0.25
ACGTcount: A:0.34, C:0.10, G:0.11, T:0.45
Consensus pattern (82 bp):
ATATATATATATATGTTTGACTATAAAATGCTTTCCATTATTTTGTTTCAAAGTAACACAAGTTG
CTTATCATGATATATAT
Found at i:6789286 original size:11 final size:11
Alignment explanation
Indices: 6789260--6789319 Score: 52
Period size: 11 Copynumber: 5.3 Consensus size: 11
6789250 TTATTACTTA
*
6789260 AAATATATTTA
1 AAATATATTTT
6789271 AAATATATTTTT
1 AAATATA-TTTT
6789283 AATATTAATATTTT
1 AA-A-T-ATATTTT
6789297 -AATAT-TTTT
1 AAATATATTTT
*
6789306 AAACATATTTT
1 AAATATATTTT
6789317 AAA
1 AAA
6789320 ATTTAAGTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
9 4 0.10
10 6 0.15
11 15 0.37
12 6 0.15
13 2 0.05
14 5 0.12
15 3 0.07
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (11 bp):
AAATATATTTT
Found at i:6792894 original size:27 final size:28
Alignment explanation
Indices: 6792856--6792922 Score: 118
Period size: 27 Copynumber: 2.4 Consensus size: 28
6792846 ATCAAGTAAG
6792856 ATTTTTTTTTTCAAATTAGCTGTAACA-
1 ATTTTTTTTTTCAAATTAGCTGTAACAT
6792883 ATTTTTTTTTTCAAATTAGCTGTAACAT
1 ATTTTTTTTTTCAAATTAGCTGTAACAT
6792911 ATCTTTTTTTTT
1 AT-TTTTTTTTT
6792923 ATTATTTCTC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 27 0.71
28 2 0.05
29 9 0.24
ACGTcount: A:0.25, C:0.10, G:0.06, T:0.58
Consensus pattern (28 bp):
ATTTTTTTTTTCAAATTAGCTGTAACAT
Found at i:6793093 original size:23 final size:23
Alignment explanation
Indices: 6793063--6793111 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
6793053 TAGTTCATAA
*
6793063 CTAAATAACAATAAGAAGAAAAT
1 CTAAATAACAATAACAAGAAAAT
*
6793086 CTAAATAACAGTAACAAGAAAAT
1 CTAAATAACAATAACAAGAAAAT
6793109 CTA
1 CTA
6793112 TGTTAGATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.61, C:0.12, G:0.08, T:0.18
Consensus pattern (23 bp):
CTAAATAACAATAACAAGAAAAT
Found at i:6793407 original size:17 final size:17
Alignment explanation
Indices: 6793364--6793407 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
6793354 AATTAAATAG
* *
6793364 ATAAAATTATTGTTTAA
1 ATAAAATTATGGATTAA
* *
6793381 ATATATTTATGGATTAA
1 ATAAAATTATGGATTAA
6793398 ATAAAATTAT
1 ATAAAATTAT
6793408 ATAGCTTGAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (17 bp):
ATAAAATTATGGATTAA
Found at i:6793626 original size:14 final size:14
Alignment explanation
Indices: 6793607--6793647 Score: 73
Period size: 14 Copynumber: 2.9 Consensus size: 14
6793597 CTTTTTTATC
6793607 GCTCTTCCATTTAG
1 GCTCTTCCATTTAG
6793621 GCTCTTCCATTTAG
1 GCTCTTCCATTTAG
*
6793635 GGTCTTCCATTTA
1 GCTCTTCCATTTA
6793648 AGGTGGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.15, C:0.27, G:0.15, T:0.44
Consensus pattern (14 bp):
GCTCTTCCATTTAG
Found at i:6793627 original size:111 final size:111
Alignment explanation
Indices: 6793432--6793633 Score: 307
Period size: 111 Copynumber: 1.8 Consensus size: 111
6793422 TACTGGCTTC
* * ** *
6793432 CCATTCAACTTATTTTCCAAACAATATTTCATCTTCTCATAGATTTTAGCATTACTCTTTTATTG
1 CCATTCAACTTATTTTCCAAACAATATTCCATCTTCTCATAGACTTTAGCAACACTCTTTTATCG
* *
6793497 CTCTTCCGTTTAGGGTCTTCCATTTAAGGTAGATTTATTTTTTCTT
66 CTCTTCCATTTAGGCTCTTCCATTTAAGGTAGATTTATTTTTTCTT
* *
6793543 CCATTCAACTTATTTTCCAAACAATATTCCATCTTCTCACT-GACTTTAGTAACACTTTTTTATC
1 CCATTCAACTTATTTTCCAAACAATATTCCATCTTCTCA-TAGACTTTAGCAACACTCTTTTATC
6793607 GCTCTTCCATTTAGGCTCTTCCATTTA
65 GCTCTTCCATTTAGGCTCTTCCATTTA
6793634 GGGTCTTCCA
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
111 80 0.99
112 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.07, T:0.46
Consensus pattern (111 bp):
CCATTCAACTTATTTTCCAAACAATATTCCATCTTCTCATAGACTTTAGCAACACTCTTTTATCG
CTCTTCCATTTAGGCTCTTCCATTTAAGGTAGATTTATTTTTTCTT
Found at i:6795721 original size:19 final size:18
Alignment explanation
Indices: 6795697--6795743 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
6795687 AATTAAACGT
6795697 TTTATTTTTATTATGATT-
1 TTTATTTTTATTAT-ATTA
*
6795715 TTATATTTTAATTATATTA
1 TT-TATTTTTATTATATTA
6795734 TTTATTTTTA
1 TTTATTTTTA
6795744 CATATATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 12 0.48
19 13 0.52
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTATTTTTATTATATTA
Found at i:6795723 original size:18 final size:18
Alignment explanation
Indices: 6795696--6795741 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
6795686 TAATTAAACG
6795696 TTTTAT-TTTT-ATTATGA
1 TTTTATATTTTAATTAT-A
6795713 TTTTATATTTTAATTATA
1 TTTTATATTTTAATTATA
6795731 TTATT-TATTTT
1 TT-TTATATTTT
6795742 TACATATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 6 0.23
18 13 0.50
19 7 0.27
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (18 bp):
TTTTATATTTTAATTATA
Found at i:6803793 original size:23 final size:23
Alignment explanation
Indices: 6803744--6803793 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
6803734 AAAGATAAAT
* * *
6803744 AGTTAAGTTTGTTCAAAACAAAG
1 AGTTAAGTCTATTCAAAACAAAC
**
6803767 AGTTAAGTCTATTCAAAATGAAC
1 AGTTAAGTCTATTCAAAACAAAC
6803790 AGTT
1 AGTT
6803794 TCAACTGTTC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.42, C:0.10, G:0.16, T:0.32
Consensus pattern (23 bp):
AGTTAAGTCTATTCAAAACAAAC
Found at i:6804378 original size:3 final size:3
Alignment explanation
Indices: 6804370--6804423 Score: 108
Period size: 3 Copynumber: 18.0 Consensus size: 3
6804360 TCCTAACAGT
6804370 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6804418 ATA ATA
1 ATA ATA
6804424 TTATTATTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 51 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:6804428 original size:3 final size:3
Alignment explanation
Indices: 6804422--6804523 Score: 204
Period size: 3 Copynumber: 34.0 Consensus size: 3
6804412 ATAATAATAA
6804422 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6804470 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6804518 TAT TAT
1 TAT TAT
6804524 CGTTCTTTAC
Statistics
Matches: 99, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 99 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:6804645 original size:3 final size:3
Alignment explanation
Indices: 6804637--6804699 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
6804627 GCAATCCTTA
6804637 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
6804685 TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT
6804700 CGTTCTTTAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:6804755 original size:176 final size:176
Alignment explanation
Indices: 6804461--6804811 Score: 702
Period size: 176 Copynumber: 2.0 Consensus size: 176
6804451 TTATTATTAT
6804461 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCG
1 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCG
6804526 TTCTTTACCTATTTGAAGTATTTTGTTTCTCAATTTCTAAGTGATTAATTGTTTTCCATCAACAT
66 TTCTTTACCTATTTGAAGTATTTTGTTTCTCAATTTCTAAGTGATTAATTGTTTTCCATCAACAT
6804591 AAAAGTTGCTGGTAGAGATGGGAGAATATAATTAATGCAATCCTTA
131 AAAAGTTGCTGGTAGAGATGGGAGAATATAATTAATGCAATCCTTA
6804637 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCG
1 TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCG
6804702 TTCTTTACCTATTTGAAGTATTTTGTTTCTCAATTTCTAAGTGATTAATTGTTTTCCATCAACAT
66 TTCTTTACCTATTTGAAGTATTTTGTTTCTCAATTTCTAAGTGATTAATTGTTTTCCATCAACAT
6804767 AAAAGTTGCTGGTAGAGATGGGAGAATATAATTAATGCAATCCTT
131 AAAAGTTGCTGGTAGAGATGGGAGAATATAATTAATGCAATCCTT
6804812 CTCATCTTAT
Statistics
Matches: 175, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
176 175 1.00
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.50
Consensus pattern (176 bp):
TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCG
TTCTTTACCTATTTGAAGTATTTTGTTTCTCAATTTCTAAGTGATTAATTGTTTTCCATCAACAT
AAAAGTTGCTGGTAGAGATGGGAGAATATAATTAATGCAATCCTTA
Found at i:6808269 original size:2 final size:2
Alignment explanation
Indices: 6808264--6808317 Score: 72
Period size: 2 Copynumber: 27.0 Consensus size: 2
6808254 TCTCTCTCTC
* * *
6808264 TA TA TA TA TA TA TA TA AA TA TA TA TA CA TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
6808306 TA TA TG TA TA TA
1 TA TA TA TA TA TA
6808318 CACATACATT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (2 bp):
TA
Found at i:6814065 original size:14 final size:15
Alignment explanation
Indices: 6814027--6814070 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 15
6814017 CATACTAAAG
6814027 AAAAACACAGAAATAAAC
1 AAAAA-ACA-AAA-AAAC
6814045 AAAAAACAAAAAAAC
1 AAAAAACAAAAAAAC
6814060 -AAAAACAAAAA
1 AAAAAACAAAAA
6814071 GAAAGGGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 11 0.42
15 4 0.15
16 3 0.12
17 3 0.12
18 5 0.19
ACGTcount: A:0.82, C:0.14, G:0.02, T:0.02
Consensus pattern (15 bp):
AAAAAACAAAAAAAC
Found at i:6819991 original size:2 final size:2
Alignment explanation
Indices: 6819984--6820019 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
6819974 ATTTTAAATA
6819984 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6820020 TGGTCTTTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6820813 original size:13 final size:13
Alignment explanation
Indices: 6820795--6820822 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
6820785 AGTCTTGGAT
6820795 TGGCAAAGATAAA
1 TGGCAAAGATAAA
6820808 TGGCAAAGATAAA
1 TGGCAAAGATAAA
6820821 TG
1 TG
6820823 ATCAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.07, G:0.25, T:0.18
Consensus pattern (13 bp):
TGGCAAAGATAAA
Found at i:6826840 original size:27 final size:28
Alignment explanation
Indices: 6826809--6826871 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 28
6826799 AACGGCAAAG
6826809 TTTAAAG-TAGGTCAACATATATTGGCT
1 TTTAAAGTTAGGTCAACATATATTGGCT
6826836 TTT-AAGTTAGGTCAACATATATTGGCT
1 TTTAAAGTTAGGTCAACATATATTGGCT
6826863 TTT-AAGTTA
1 TTTAAAGTTA
6826872 AGTACCAGTG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
26 3 0.09
27 32 0.91
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (28 bp):
TTTAAAGTTAGGTCAACATATATTGGCT
Found at i:6838606 original size:21 final size:22
Alignment explanation
Indices: 6838567--6838619 Score: 90
Period size: 21 Copynumber: 2.5 Consensus size: 22
6838557 ACCGAAATTA
*
6838567 ATAAAATATTATTTTTTTAAAT
1 ATAAAATATTATATTTTTAAAT
6838589 ATAAAATATTA-ATTTTTAAAT
1 ATAAAATATTATATTTTTAAAT
6838610 ATAAAATATT
1 ATAAAATATT
6838620 TAAAAATATC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 19 0.63
22 11 0.37
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATAAAATATTATATTTTTAAAT
Found at i:6838778 original size:11 final size:11
Alignment explanation
Indices: 6838762--6838786 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6838752 CTTCATCCTA
6838762 CCCGACCCGAC
1 CCCGACCCGAC
6838773 CCCGACCCGAC
1 CCCGACCCGAC
6838784 CCC
1 CCC
6838787 CGATTTTCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.68, G:0.16, T:0.00
Consensus pattern (11 bp):
CCCGACCCGAC
Found at i:6839237 original size:22 final size:22
Alignment explanation
Indices: 6839206--6839248 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
6839196 GTTAATTCAA
* *
6839206 AATAAGATATGAAAATGATATT
1 AATAAAATATGAAAATAATATT
*
6839228 AATAAAATATTAAAATAATAT
1 AATAAAATATGAAAATAATAT
6839249 AATTTAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (22 bp):
AATAAAATATGAAAATAATATT
Found at i:6839304 original size:21 final size:23
Alignment explanation
Indices: 6839250--6839305 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 23
6839240 AAATAATATA
**
6839250 ATTTAAAATTTTAATAAAAATTAT
1 ATTT-AAATTTTTTTAAAAATTAT
6839274 ATTTAAATTTTTTTAAAAA-TAT
1 ATTTAAATTTTTTTAAAAATTAT
*
6839296 -TTTATATTTT
1 ATTTAAATTTT
6839306 ACGTGTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
21 9 0.31
22 3 0.10
23 13 0.45
24 4 0.14
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
ATTTAAATTTTTTTAAAAATTAT
Found at i:6841670 original size:23 final size:23
Alignment explanation
Indices: 6841625--6841695 Score: 60
Period size: 23 Copynumber: 3.1 Consensus size: 23
6841615 TACGATATGT
*
6841625 AAATGATATTAA--TAAAATATTA
1 AAATGATA-TAATTTAAAATTTTA
6841647 AAATGATATAATTTAAAATTTTA
1 AAATGATATAATTTAAAATTTTA
**
6841670 ATAAAAAT-TATATTT-AAATTTTA
1 A-AATGATATA-ATTTAAAATTTTA
6841693 AAA
1 AAA
6841696 AAATATTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
21 3 0.07
22 10 0.24
23 21 0.50
24 8 0.19
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (23 bp):
AAATGATATAATTTAAAATTTTA
Found at i:6841705 original size:20 final size:22
Alignment explanation
Indices: 6841657--6841712 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
6841647 AAATGATATA
*
6841657 ATTTAAAATTTTAATAAAAATT
1 ATTTTAAATTTTAATAAAAATT
6841679 ATATTTAAATTTTAA-AAAAA-T
1 AT-TTTAAATTTTAATAAAAATT
*
6841700 ATTTTATATTTTA
1 ATTTTAAATTTTA
6841713 CGTGTTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 10 0.32
21 3 0.10
22 7 0.23
23 11 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTTTAAATTTTAATAAAAATT
Found at i:6842273 original size:12 final size:13
Alignment explanation
Indices: 6842258--6842317 Score: 56
Period size: 12 Copynumber: 4.8 Consensus size: 13
6842248 AATATTATTT
6842258 TAAATA-TAAATA
1 TAAATATTAAATA
6842270 TAAA-ATTAAATA
1 TAAATATTAAATA
* *
6842282 TATATA-AAAATA
1 TAAATATTAAATA
*
6842294 TATATAATTAAATA
1 TAAAT-ATTAAATA
6842308 TAAA-ATTAAA
1 TAAATATTAAA
6842318 AAAATAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 1 0.03
12 29 0.73
13 2 0.05
14 8 0.20
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
TAAATATTAAATA
Found at i:6842298 original size:16 final size:16
Alignment explanation
Indices: 6842261--6842299 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
6842251 ATTATTTTAA
* *
6842261 ATATAAATATAAAATT
1 ATATATATATAAAAAT
*
6842277 AAATATATATAAAAAT
1 ATATATATATAAAAAT
6842293 ATATATA
1 ATATATA
6842300 ATTAAATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATATATATATAAAAAT
Found at i:6842310 original size:22 final size:22
Alignment explanation
Indices: 6842257--6842318 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
6842247 AAATATTATT
*
6842257 TTAAATATAAATATAAAATTAA
1 TTAAATATAAAAATAAAATTAA
* * *
6842279 ATATATATAAAAAT-ATATATAA
1 TTAAATATAAAAATAAAAT-TAA
*
6842301 TTAAATATAAAATTAAAA
1 TTAAATATAAAAATAAAA
6842319 AAATAAATTT
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
21 3 0.10
22 25 0.83
23 2 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
TTAAATATAAAAATAAAATTAA
Found at i:6848217 original size:26 final size:26
Alignment explanation
Indices: 6848188--6848250 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
6848178 AAATTTAAGA
*
6848188 TTTGGGTTTTGTTTTAGGATTTATGG-
1 TTTGGGTTTTGGTTTA-GATTTATGGC
*
6848214 TTTGGAGTTTGGGTTTAGATTTATGGC
1 TTTGG-GTTTTGGTTTAGATTTATGGC
*
6848241 TTAGGGTTTT
1 TTTGGGTTTT
6848251 AATTTAAGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 18 0.58
27 13 0.42
ACGTcount: A:0.13, C:0.02, G:0.32, T:0.54
Consensus pattern (26 bp):
TTTGGGTTTTGGTTTAGATTTATGGC
Found at i:6848281 original size:20 final size:20
Alignment explanation
Indices: 6848220--6848291 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 20
6848210 ATGGTTTGGA
6848220 GTTT-GGGTTTAGATTTATG
1 GTTTAGGGTTTAGATTTATG
* *
6848239 GCTTAGGGTTTTA-ATTTAAG
1 GTTTAGGG-TTTAGATTTATG
6848259 GTTTAGGGTTTAGGATTT-TG
1 GTTTAGGGTTTA-GATTTATG
*
6848279 GTTCTAAGGTTTA
1 GTT-TAGGGTTTA
6848292 AAGTTTTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
19 7 0.16
20 20 0.47
21 16 0.37
ACGTcount: A:0.19, C:0.03, G:0.29, T:0.49
Consensus pattern (20 bp):
GTTTAGGGTTTAGATTTATG
Found at i:6848719 original size:3 final size:3
Alignment explanation
Indices: 6848711--6848739 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
6848701 AAAGCAATAT
6848711 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6848740 TACATAATTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:6851245 original size:162 final size:164
Alignment explanation
Indices: 6850950--6851283 Score: 399
Period size: 162 Copynumber: 2.0 Consensus size: 164
6850940 GAGCGGGTCA
*
6850950 TAAATTAAACTTGTAATTGAGCTGTGTAAAACAAACTTTTAAATAAATCACATTATGAACCACAT
1 TAAATTAAACTTGTAATTGAGC-ATGTAAAACAAACTTTTAAATAAATCACATTATGAACCACAT
* * *
6851015 AATCGACCACATATTAGGCTTTTAAATGGATAATTTAATGGGCTCAAAAATGACTTCGGCTCATG
65 AATCGACCACATATTAGGCTTTTAAAAGGATAATGTAATGGACTCAAAAATGACTTCGGCTCATG
* *
6851080 TTGGG-CTTTTAGTTTCGTTAACTCCAAAATTAAAT
130 TTGGGTC-ATTAGTTTCATTAACTCCAAAATTAAAT
* * ** **
6851115 TAAATTAAGCTTGTAATT-AG-ATGTATAACAAACTTTTAAATAGCTCACATTATGAGTCACATA
1 TAAATTAAACTTGTAATTGAGCATGTAAAACAAACTTTTAAATAAATCACATTATGAACCACATA
** * * * *
6851178 ATCGATTACGTATTGGGTTTTTAAAAGG-TAATGTAATGGACTCAAAAAAATGACTT-GGCTTAT
66 ATCGACCACATATTAGGCTTTTAAAAGGATAATGTAATGGACTC--AAAAATGACTTCGGCTCAT
* * * *
6851241 GTTGGGTCATTAGTTTTATTGACTTCAAAATTGAAT
129 GTTGGGTCATTAGTTTCATTAACTCCAAAATTAAAT
6851277 TAAATTA
1 TAAATTA
6851284 GGTCTTAGTT
Statistics
Matches: 144, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
161 13 0.09
162 100 0.69
163 12 0.08
164 2 0.01
165 17 0.12
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.36
Consensus pattern (164 bp):
TAAATTAAACTTGTAATTGAGCATGTAAAACAAACTTTTAAATAAATCACATTATGAACCACATA
ATCGACCACATATTAGGCTTTTAAAAGGATAATGTAATGGACTCAAAAATGACTTCGGCTCATGT
TGGGTCATTAGTTTCATTAACTCCAAAATTAAAT
Found at i:6854742 original size:3 final size:3
Alignment explanation
Indices: 6854734--6854771 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
6854724 GACCATGGCT
6854734 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6854772 TCTGTAATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:6856211 original size:22 final size:22
Alignment explanation
Indices: 6856165--6856240 Score: 61
Period size: 23 Copynumber: 3.5 Consensus size: 22
6856155 ATATAGATAA
* *
6856165 ATATAAA-TAT-ATTTATTTTT
1 ATATAAATTATAATTTAATTAT
6856185 AATATAAATTATAATTTAATTAT
1 -ATATAAATTATAATTTAATTAT
* *
6856208 ATATAAATGTA-AATTTTTATTAA
1 ATATAAAT-TATAA-TTTAATTAT
6856231 AT-TAAATTAT
1 ATATAAATTAT
6856241 TAAATAATAC
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
21 9 0.20
22 18 0.39
23 19 0.41
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (22 bp):
ATATAAATTATAATTTAATTAT
Found at i:6857785 original size:163 final size:163
Alignment explanation
Indices: 6857515--6857840 Score: 598
Period size: 163 Copynumber: 2.0 Consensus size: 163
6857505 ATCAACTGAT
*
6857515 GGATTTTTTTCTCATCCTTGAATGTAAGTCGATTGTACTAAATCACGTTAAATTGTTATCACTTG
1 GGATTTTTTTCTCATCCTTGAATGTAAGTCGATTGGACTAAATCACGTTAAATTGTTATCACTTG
*
6857580 TGAGATTGAGTGATTATTTGATTTCGCTTTTATTGGTATGATTGGATTGAGACTATTTGCCCTAA
66 TGAGATTGAGTGATTATTTGATTTCGCTTCTATTGGTATGATTGGATTGAGACTATTTGCCCTAA
6857645 CAAATGGTATCAGAGCATGATGACCCTAACAAG
131 CAAATGGTATCAGAGCATGATGACCCTAACAAG
* *
6857678 GGATTTTTTTCTCATCCTTGAATGTAGGTCGATTGGATTAAATCACGTTAAATTGTTATCACTTG
1 GGATTTTTTTCTCATCCTTGAATGTAAGTCGATTGGACTAAATCACGTTAAATTGTTATCACTTG
6857743 TGAGATTGAGTGATTATTTGATTTCGCTTCTATTGGTATGATTGGATTGAGACTATTTGCCCTAA
66 TGAGATTGAGTGATTATTTGATTTCGCTTCTATTGGTATGATTGGATTGAGACTATTTGCCCTAA
* *
6857808 CAAGTGGTATCAGAGCATGATGACTCTAACAAG
131 CAAATGGTATCAGAGCATGATGACCCTAACAAG
6857841 TGGTATCAGA
Statistics
Matches: 157, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
163 157 1.00
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.39
Consensus pattern (163 bp):
GGATTTTTTTCTCATCCTTGAATGTAAGTCGATTGGACTAAATCACGTTAAATTGTTATCACTTG
TGAGATTGAGTGATTATTTGATTTCGCTTCTATTGGTATGATTGGATTGAGACTATTTGCCCTAA
CAAATGGTATCAGAGCATGATGACCCTAACAAG
Found at i:6869633 original size:22 final size:22
Alignment explanation
Indices: 6869602--6869644 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
6869592 GTTAATTCAA
* *
6869602 AATAAGATATGAAAATGATATT
1 AATAAAATATGAAAATAATATT
*
6869624 AATAAAATATTAAAATAATAT
1 AATAAAATATGAAAATAATAT
6869645 AATTTAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (22 bp):
AATAAAATATGAAAATAATATT
Found at i:6869770 original size:6 final size:7
Alignment explanation
Indices: 6869761--6869808 Score: 53
Period size: 8 Copynumber: 6.4 Consensus size: 7
6869751 ATACAAAAAT
6869761 TATTA-A
1 TATTATA
6869767 TATTATA
1 TATTATA
6869774 TATATATA
1 TAT-TATA
6869782 TATATATA
1 TAT-TATA
6869790 TATATATA
1 TAT-TATA
6869798 TATATATA
1 TAT-TATA
6869806 TAT
1 TAT
6869809 AGAAATGGTC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
6 5 0.12
7 4 0.10
8 31 0.77
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (7 bp):
TATTATA
Found at i:6869777 original size:2 final size:2
Alignment explanation
Indices: 6869766--6869809 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
6869756 AAAATTATTA
6869766 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6869807 AT A
1 AT A
6869810 GAAATGGTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.02
2 40 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6870004 original size:118 final size:118
Alignment explanation
Indices: 6869796--6870032 Score: 474
Period size: 118 Copynumber: 2.0 Consensus size: 118
6869786 TATATATATA
6869796 TATATATATATATAGAAATGGTCAAAGCACAAGCAGCGCGTCACAAACTAAAATTTCTCTTCCTT
1 TATATATATATATAGAAATGGTCAAAGCACAAGCAGCGCGTCACAAACTAAAATTTCTCTTCCTT
6869861 TTTTCCACGATCTTTCTGTTTGTCCAAGTCCATCATTGACGGACTTAGTTTGG
66 TTTTCCACGATCTTTCTGTTTGTCCAAGTCCATCATTGACGGACTTAGTTTGG
6869914 TATATATATATATAGAAATGGTCAAAGCACAAGCAGCGCGTCACAAACTAAAATTTCTCTTCCTT
1 TATATATATATATAGAAATGGTCAAAGCACAAGCAGCGCGTCACAAACTAAAATTTCTCTTCCTT
6869979 TTTTCCACGATCTTTCTGTTTGTCCAAGTCCATCATTGACGGACTTAGTTTGG
66 TTTTCCACGATCTTTCTGTTTGTCCAAGTCCATCATTGACGGACTTAGTTTGG
6870032 T
1 T
6870033 GGTCATAATT
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 119 1.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (118 bp):
TATATATATATATAGAAATGGTCAAAGCACAAGCAGCGCGTCACAAACTAAAATTTCTCTTCCTT
TTTTCCACGATCTTTCTGTTTGTCCAAGTCCATCATTGACGGACTTAGTTTGG
Found at i:6871003 original size:7 final size:7
Alignment explanation
Indices: 6870988--6871017 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
6870978 CTTTGAAACC
6870988 AAAAA-A
1 AAAAAGA
6870994 AAAAAGA
1 AAAAAGA
6871001 AAAAAGA
1 AAAAAGA
6871008 AAAAAGA
1 AAAAAGA
6871015 AAA
1 AAA
6871018 TCCACTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:6871743 original size:27 final size:27
Alignment explanation
Indices: 6871687--6871745 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
6871677 TTTTAAATCT
* * * *
6871687 TTTTTATTTTTTAATTAATTTTATTTA
1 TTTTTATATTTAAATTAATATTATTAA
6871714 TTTTTATATTTAAATTAA-ATTATTAA
1 TTTTTATATTTAAATTAATATTATTAA
*
6871740 ATTTTA
1 TTTTTA
6871746 ATCATAGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 11 0.41
27 16 0.59
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (27 bp):
TTTTTATATTTAAATTAATATTATTAA
Done.