Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 36 of 100
Found at i:6877121 original size:18 final size:18
Alignment explanation
Indices: 6877098--6877138 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
6877088 CTTGTATTAA
*
6877098 AATCAAATT-AATTTATT
1 AATCAAATTGAATTCATT
6877115 CAATC-AATTGAATTCATT
1 -AATCAAATTGAATTCATT
6877133 AATCAA
1 AATCAA
6877139 TCGTTCACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.39
Consensus pattern (18 bp):
AATCAAATTGAATTCATT
Found at i:6877136 original size:17 final size:17
Alignment explanation
Indices: 6877098--6877139 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
6877088 CTTGTATTAA
*
6877098 AATCAAATTAATTTATTC
1 AATC-AATTAATTCATTC
6877116 AATCAATTGAATTCATT-
1 AATCAATT-AATTCATTC
6877133 AATCAAT
1 AATCAAT
6877140 CGTTCACTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.45, C:0.12, G:0.02, T:0.40
Consensus pattern (17 bp):
AATCAATTAATTCATTC
Found at i:6880382 original size:52 final size:53
Alignment explanation
Indices: 6880319--6880424 Score: 160
Period size: 53 Copynumber: 2.0 Consensus size: 53
6880309 TGAATAAAAA
* *
6880319 GACTTGCAAAAGAAAAATTCT-AAGAGAAAAAAGATTCTTAATAGGCAAGTTT
1 GACTTGCAAAAGAAAAATTCTAAAAAAAAAAAAGATTCTTAATAGGCAAGTTT
* * *
6880371 GACTTGTAAAAGAAGAATTCTAAAAAAAAAAAAGATTCTTAATAGGTAAGTTT
1 GACTTGCAAAAGAAAAATTCTAAAAAAAAAAAAGATTCTTAATAGGCAAGTTT
6880424 G
1 G
6880425 TATGCTTATA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
52 19 0.40
53 29 0.60
ACGTcount: A:0.49, C:0.08, G:0.17, T:0.26
Consensus pattern (53 bp):
GACTTGCAAAAGAAAAATTCTAAAAAAAAAAAAGATTCTTAATAGGCAAGTTT
Found at i:6882065 original size:35 final size:35
Alignment explanation
Indices: 6882024--6882130 Score: 103
Period size: 35 Copynumber: 3.0 Consensus size: 35
6882014 TATTATTATG
6882024 TATTAATATATGTATATATTTATTTATTTATTTTT
1 TATTAATATATGTATATATTTATTTATTTATTTTT
* * * *
6882059 TGTTAATATTTATGTGTAT-TTTA-TTATTTATGTAT
1 TATTAATA--TATGTATATATTTATTTATTTATTTTT
* *
6882094 TATTACTAATATGTATATATATATTT-TTTATCTTTT
1 TATTAAT-ATATGTATATATTTATTTATTTAT-TTTT
6882130 T
1 T
6882131 TATTTTATTT
Statistics
Matches: 56, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
34 8 0.14
35 30 0.54
36 10 0.18
37 8 0.14
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.64
Consensus pattern (35 bp):
TATTAATATATGTATATATTTATTTATTTATTTTT
Found at i:6882155 original size:18 final size:18
Alignment explanation
Indices: 6882120--6882153 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6882110 ATATATATTT
*
6882120 TTTATCTTTTTTATTTTA
1 TTTATCTTTTGTATTTTA
6882138 TTTAT-TTTTGTATTTT
1 TTTATCTTTTGTATTTT
6882154 TACTTATCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTATCTTTTGTATTTTA
Found at i:6882196 original size:65 final size:63
Alignment explanation
Indices: 6882127--6882264 Score: 140
Period size: 65 Copynumber: 2.2 Consensus size: 63
6882117 TTTTTTATCT
* *
6882127 TTTTTATTTTAT-TTAT-TTTTGTATTTTTACTTATCTAATTATATA-TCTGATTTTTTTTATTA
1 TTTTTATTTTATAATATCTTTTG-ATTTAT-CTTATCTAATTATATAGT-T--TTTTTTTTATT-
6882189 TT-A
60 TTGA
** * *
6882192 TTTTTATCCTATAATATCTTTTGATTTATCTTTTCTAATTATCTAGTTTTTTTTTTATTTTGA
1 TTTTTATTTTATAATATCTTTTGATTTATCTTATCTAATTATATAGTTTTTTTTTTATTTTGA
6882255 TTTTTATTTT
1 TTTTTATTTT
6882265 GGAGGGCTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
62 2 0.03
63 20 0.33
65 25 0.41
66 9 0.15
67 5 0.08
ACGTcount: A:0.21, C:0.07, G:0.04, T:0.69
Consensus pattern (63 bp):
TTTTTATTTTATAATATCTTTTGATTTATCTTATCTAATTATATAGTTTTTTTTTTATTTTGA
Found at i:6882549 original size:25 final size:25
Alignment explanation
Indices: 6882519--6882572 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
6882509 CTGGGAGTGA
6882519 GAAAAAATTTTTAG-AAATTTTTGG
1 GAAAAAATTTTTAGAAAATTTTTGG
* *
6882543 CGAAAAATTTTTTTGAAAATTTTTGG
1 -GAAAAAATTTTTAGAAAATTTTTGG
6882569 GAAA
1 GAAA
6882573 TTTCCAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.41
Consensus pattern (25 bp):
GAAAAAATTTTTAGAAAATTTTTGG
Found at i:6882732 original size:19 final size:20
Alignment explanation
Indices: 6882704--6882747 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
6882694 TTCGGCCAAC
*
6882704 TTCCGGCGACA-TTTCCAGA
1 TTCCGACGACATTTTCCAGA
6882723 TTCCGACGACATTTTCCAGA
1 TTCCGACGACATTTTCCAGA
*
6882743 ATCCG
1 TTCCG
6882748 GCACCGTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.23, C:0.32, G:0.18, T:0.27
Consensus pattern (20 bp):
TTCCGACGACATTTTCCAGA
Found at i:6883125 original size:6 final size:6
Alignment explanation
Indices: 6883104--6883188 Score: 50
Period size: 6 Copynumber: 13.7 Consensus size: 6
6883094 TCTAATATTC
* * *
6883104 TTTTTA TCTTTA -TTTTA TTTTTTA TTTCT- GTTTTA CTTTTCT- TTATTTA
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA -TTTT-TA TT-TTTA
* *
6883153 TTTTTA TTTTTA TTTATC TTTTTA TTATTCTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TT-TT-TA TTTT
6883189 CTTCAAATAA
Statistics
Matches: 60, Mismatches: 10, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
5 7 0.12
6 32 0.53
7 16 0.27
8 5 0.08
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:6883168 original size:16 final size:15
Alignment explanation
Indices: 6883140--6883188 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
6883130 TCTGTTTTAC
*
6883140 TTTTCTTTATTTATT
1 TTTTTTTTATTTATT
*
6883155 TTTATTTTTATTTATC
1 TTT-TTTTTATTTATT
*
6883171 TTTTTATTATTCTATT
1 TTTTTTTTATT-TATT
6883187 TT
1 TT
6883189 CTTCAAATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTTTTATTTATT
Found at i:6883345 original size:118 final size:116
Alignment explanation
Indices: 6883214--6883491 Score: 443
Period size: 118 Copynumber: 2.4 Consensus size: 116
6883204 AAATTTTCCA
*
6883214 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATACATTTTCAAAAA
1 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC-AAAA
*
6883279 AAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTA-AGATCAAAGTTTC
65 AAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAGAGAT-AAA-TTTC
*
6883332 AAAAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATAAATTTTCCTTAGAAATAAATTTTCAAAA
1 AAAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAA
* * *
6883396 AATATTTTTGGGGAAAAGTTGAATGTATCAATTTTCCTCAGAGATAAATTTC
65 AAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAGAGATAAATTTC
*
6883448 AAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
6883492 CTACACAAGA
Statistics
Matches: 149, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
116 44 0.30
117 45 0.30
118 60 0.40
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (116 bp):
AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAAA
AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCAGAGATAAATTTC
Found at i:6883477 original size:59 final size:59
Alignment explanation
Indices: 6883214--6883491 Score: 370
Period size: 57 Copynumber: 4.7 Consensus size: 59
6883204 AAATTTTCCA
* *
6883214 AAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATACATTTTC
1 AAAAAAAAATATTTTTA-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAGTTTC
* * *
6883274 AAAAAAAGAT-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTA-AGATCAAAGTTTC
1 AAAAAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAAGTTTC
* *
6883332 AAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCTTAGAAATAAATTTTC
1 AAAAAAAAATATTTTT-AGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAGTTTC
* * * *
6883392 ---AAAAAATATTTTTGGGGAAAAGTTGAATGTATCAATTTTCCTCAGAGATAAA-TTTC
1 AAAAAAAAATATTTTT-AGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAGTTTC
6883448 AAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAAATATTTTTAGG-AAAAGTTGAAAGTATCAATTTTCC
6883492 CTACACAAGA
Statistics
Matches: 193, Mismatches: 17, Indels: 17
0.85 0.07 0.07
Matches are distributed among these distances:
56 4 0.02
57 50 0.26
58 46 0.24
59 45 0.23
60 45 0.23
61 3 0.02
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (59 bp):
AAAAAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAGTTTC
Found at i:6891867 original size:8 final size:8
Alignment explanation
Indices: 6891854--6891983 Score: 198
Period size: 8 Copynumber: 16.8 Consensus size: 8
6891844 CTATGCTTGA
6891854 AAAAAATG
1 AAAAAATG
6891862 AAAAAATG
1 AAAAAATG
*
6891870 GAAAAATG
1 AAAAAATG
6891878 -AAAAATG
1 AAAAAATG
6891885 AAAAAATG
1 AAAAAATG
6891893 AAAAAATG
1 AAAAAATG
6891901 --AAAATG
1 AAAAAATG
6891907 AAAAAATG
1 AAAAAATG
6891915 AAAAAATG
1 AAAAAATG
6891923 AAAAAATG
1 AAAAAATG
6891931 -AAAAATG
1 AAAAAATG
6891938 AAAAAATG
1 AAAAAATG
6891946 AAAAAATG
1 AAAAAATG
6891954 -AAAAATG
1 AAAAAATG
6891961 AAAAAATG
1 AAAAAATG
*
6891969 AAAATGATG
1 AAAA-AATG
6891978 AAAAAA
1 AAAAAA
6891984 AGTTAACAAG
Statistics
Matches: 113, Mismatches: 3, Indels: 12
0.88 0.02 0.09
Matches are distributed among these distances:
6 6 0.05
7 21 0.19
8 79 0.70
9 7 0.06
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.13
Consensus pattern (8 bp):
AAAAAATG
Found at i:6891881 original size:15 final size:16
Alignment explanation
Indices: 6891854--6891983 Score: 198
Period size: 15 Copynumber: 8.4 Consensus size: 16
6891844 CTATGCTTGA
6891854 AAAAAATGAAAAAATG
1 AAAAAATGAAAAAATG
*
6891870 GAAAAATG-AAAAATG
1 AAAAAATGAAAAAATG
6891885 AAAAAATGAAAAAATG
1 AAAAAATGAAAAAATG
6891901 --AAAATGAAAAAATG
1 AAAAAATGAAAAAATG
6891915 AAAAAATGAAAAAATG
1 AAAAAATGAAAAAATG
6891931 -AAAAATGAAAAAATG
1 AAAAAATGAAAAAATG
6891946 AAAAAATG-AAAAATG
1 AAAAAATGAAAAAATG
*
6891961 AAAAAATGAAAATGATG
1 AAAAAATGAAAA-AATG
6891978 AAAAAA
1 AAAAAA
6891984 AGTTAACAAG
Statistics
Matches: 105, Mismatches: 3, Indels: 11
0.88 0.03 0.09
Matches are distributed among these distances:
14 14 0.13
15 44 0.42
16 38 0.36
17 9 0.09
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.13
Consensus pattern (16 bp):
AAAAAATGAAAAAATG
Found at i:6891881 original size:23 final size:23
Alignment explanation
Indices: 6891855--6891983 Score: 192
Period size: 23 Copynumber: 5.6 Consensus size: 23
6891845 TATGCTTGAA
*
6891855 AAAAATGAAAAAATGGAAAAATG
1 AAAAATGAAAAAATGAAAAAATG
6891878 AAAAATGAAAAAATGAAAAAATG
1 AAAAATGAAAAAATGAAAAAATG
6891901 -AAAATGAAAAAATGAAAAAATG
1 AAAAATGAAAAAATGAAAAAATG
6891923 AAAAAATG-AAAAATGAAAAAATG
1 -AAAAATGAAAAAATGAAAAAATG
6891946 AAAAAATG-AAAAATGAAAAAATG
1 -AAAAATGAAAAAATGAAAAAATG
6891969 AAAATGATGAAAAAA
1 AAAA--ATGAAAAAA
6891984 AGTTAACAAG
Statistics
Matches: 100, Mismatches: 1, Indels: 8
0.92 0.01 0.07
Matches are distributed among these distances:
22 26 0.26
23 60 0.60
24 9 0.09
25 5 0.05
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.13
Consensus pattern (23 bp):
AAAAATGAAAAAATGAAAAAATG
Found at i:6891892 original size:31 final size:31
Alignment explanation
Indices: 6891854--6891983 Score: 203
Period size: 31 Copynumber: 4.2 Consensus size: 31
6891844 CTATGCTTGA
6891854 AAAAAATGAAAAAATGGAAAAATG-AAAAATG
1 AAAAAATGAAAAAAT-GAAAAATGAAAAAATG
6891885 AAAAAATGAAAAAATG-AAAATGAAAAAATG
1 AAAAAATGAAAAAATGAAAAATGAAAAAATG
6891915 AAAAAATGAAAAAATGAAAAATGAAAAAATG
1 AAAAAATGAAAAAATGAAAAATGAAAAAATG
*
6891946 AAAAAATG-AAAAATGAAAAAATGAAAATGATG
1 AAAAAATGAAAAAATG-AAAAATGAAAA-AATG
6891978 AAAAAA
1 AAAAAA
6891984 AGTTAACAAG
Statistics
Matches: 94, Mismatches: 1, Indels: 7
0.92 0.01 0.07
Matches are distributed among these distances:
29 6 0.06
30 31 0.33
31 48 0.51
32 9 0.10
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.13
Consensus pattern (31 bp):
AAAAAATGAAAAAATGAAAAATGAAAAAATG
Found at i:6893093 original size:42 final size:41
Alignment explanation
Indices: 6893020--6893371 Score: 548
Period size: 41 Copynumber: 8.5 Consensus size: 41
6893010 CAAAGTTCAT
6893020 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCCCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTAC-TTT-CCAAAGTCGTGG
*
6893063 TGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
* *
6893104 TACCTCTGTTTAGAGGAGTAATTTACTTTCCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
6893145 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTAC-TTTCCAAAGTCGTGG
6893187 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCC-AAGTTCGT--
1 TGCCTCTGTTTAGAGGAGCAATTTAC-TTTCCAAAG-TCGTGG
6893227 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
*
6893268 TACCTCTGTTTAGAGGAGCAATTTACTTTCCAAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCC-AAAGTCGTGG
* *
6893310 TGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCGTTG
1 TGCCTCTGTTTAGAGGAGCAATTTA-CTTTC-CAAAGTCGTGG
*
6893353 AGCCTCTGTTTAGAGGAGC
1 TGCCTCTGTTTAGAGGAGC
6893372 TTTGGTAAAA
Statistics
Matches: 290, Mismatches: 11, Indels: 16
0.91 0.03 0.05
Matches are distributed among these distances:
39 9 0.03
40 29 0.10
41 107 0.37
42 88 0.30
43 56 0.19
44 1 0.00
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (41 bp):
TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGG
Found at i:6893411 original size:22 final size:22
Alignment explanation
Indices: 6893379--6893460 Score: 110
Period size: 23 Copynumber: 3.6 Consensus size: 22
6893369 AGCTTTGGTA
*
6893379 AAAAAAAAAAAAAACAAAAAAC
1 AAAAAACAAAAAAACAAAAAAC
6893401 AAAAAACAAAAAAACAAAAAAC
1 AAAAAACAAAAAAACAAAAAAC
* *
6893423 AAAAAAACAAAAAACAAAAAAAAA
1 -AAAAAACAAAAAA-ACAAAAAAC
*
6893447 AAAAAACCAAAAAA
1 AAAAAACAAAAAAA
6893461 TGTTGAGTTG
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
22 22 0.41
23 25 0.46
24 7 0.13
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (22 bp):
AAAAAACAAAAAAACAAAAAAC
Found at i:6893451 original size:15 final size:15
Alignment explanation
Indices: 6893379--6893450 Score: 121
Period size: 15 Copynumber: 4.9 Consensus size: 15
6893369 AGCTTTGGTA
*
6893379 AAAAAAAAAAAAAAC
1 AAAAAAACAAAAAAC
6893394 -AAAAAACAAAAAAC
1 AAAAAAACAAAAAAC
6893408 AAAAAAACAAAAAAC
1 AAAAAAACAAAAAAC
6893423 AAAAAAACAAAAAAC
1 AAAAAAACAAAAAAC
6893438 AAAAAAA-AAAAAA
1 AAAAAAACAAAAAA
6893451 AACCAAAAAA
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
14 19 0.35
15 36 0.65
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (15 bp):
AAAAAAACAAAAAAC
Found at i:6893459 original size:7 final size:7
Alignment explanation
Indices: 6893380--6893449 Score: 106
Period size: 7 Copynumber: 9.9 Consensus size: 7
6893370 GCTTTGGTAA
*
6893380 AAAAAAA
1 AAAAAAC
6893387 AAAAAAC
1 AAAAAAC
6893394 AAAAAAC
1 AAAAAAC
6893401 AAAAAAC
1 AAAAAAC
6893408 AAAAAAAC
1 -AAAAAAC
6893416 AAAAAAC
1 AAAAAAC
6893423 AAAAAAAC
1 -AAAAAAC
6893431 AAAAAAC
1 AAAAAAC
6893438 AAAAAA-
1 AAAAAAC
6893444 AAAAAA
1 AAAAAA
6893450 AAACCAAAAA
Statistics
Matches: 60, Mismatches: 1, Indels: 5
0.91 0.02 0.08
Matches are distributed among these distances:
6 6 0.10
7 40 0.67
8 14 0.23
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:6893460 original size:1 final size:1
Alignment explanation
Indices: 6893378--6893452 Score: 87
Period size: 1 Copynumber: 75.0 Consensus size: 1
6893368 GAGCTTTGGT
* * * * * * *
6893378 AAAAAAAAAAAAAAACAAAAAACAAAAAACAAAAAAACAAAAAACAAAAAAACAAAAAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6893443 AAAAAAAAAA
1 AAAAAAAAAA
6893453 CCAAAAAATG
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:6893621 original size:19 final size:20
Alignment explanation
Indices: 6893597--6893634 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
6893587 CAACTTCAAG
*
6893597 CGACA-TTTCCAGATTCCGA
1 CGACATTTTCCAGAATCCGA
6893616 CGACATTTTCCAGAATCCG
1 CGACATTTTCCAGAATCCG
6893635 GCACCGTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (20 bp):
CGACATTTTCCAGAATCCGA
Found at i:6894028 original size:6 final size:6
Alignment explanation
Indices: 6894007--6894091 Score: 50
Period size: 6 Copynumber: 13.7 Consensus size: 6
6893997 TCTAATATTC
* * *
6894007 TTTTTA TCTTTA -TTTTA TTTTTTA TTTCT- GTTTTA CTTTTCT- TTATTTA
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA TTTTTA -TTTT-TA TT-TTTA
* *
6894056 TTTTTA TTTTTA TTTATC TTTTTA TTATTCTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TT-TT-TA TTTT
6894092 CTTCAAATAA
Statistics
Matches: 60, Mismatches: 10, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
5 7 0.12
6 32 0.53
7 16 0.27
8 5 0.08
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:6894071 original size:16 final size:15
Alignment explanation
Indices: 6894043--6894091 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
6894033 TCTGTTTTAC
*
6894043 TTTTCTTTATTTATT
1 TTTTTTTTATTTATT
*
6894058 TTTATTTTTATTTATC
1 TTT-TTTTTATTTATT
*
6894074 TTTTTATTATTCTATT
1 TTTTTTTTATT-TATT
6894090 TT
1 TT
6894092 CTTCAAATAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTTTTATTTATT
Found at i:6894188 original size:60 final size:60
Alignment explanation
Indices: 6894107--6894335 Score: 335
Period size: 60 Copynumber: 3.9 Consensus size: 60
6894097 AATAAAAATC
6894107 AAATTTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTA-AGAT
1 AAATTTT-CAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAGAT
* * *
6894167 CAAAGTTTCAAAAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATAAATTTTCCTTAGAAAT
1 -AAATTTTCAAAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAGAT
* * *
6894228 AAATTTTC---AAAAAATATTTTTGGGGAAAAGTTGAATGTATCAATTTTCCTCAGAGAT
1 AAATTTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAGAT
6894285 AAA-TTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATTTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
6894336 CTACACAAGA
Statistics
Matches: 152, Mismatches: 10, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
56 4 0.03
57 46 0.30
58 1 0.01
59 40 0.26
60 52 0.34
61 9 0.06
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (60 bp):
AAATTTTCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAGAT
Found at i:6894332 original size:116 final size:117
Alignment explanation
Indices: 6894119--6894335 Score: 359
Period size: 116 Copynumber: 1.9 Consensus size: 117
6894109 ATTTTCCAAA
*
6894119 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAGATCAAAGTTTCAAAAAAAA
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAAGATCAAAGTTTCAAAAAAAA
6894184 ATATTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCTTAGAAATAAATTTTC
66 ATATTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCTTAGAAATAAATTTTC
* *
6894236 AAAAAATATTTTTGGGGAAAAGTTGAATGTATCAATTTTCCTCAGAGAT-AAA-TTTCAAAAAAA
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCA-AGATCAAAGTTTCAAAAAAA
*
6894299 AATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
65 AATATTTTTGA-GGAAAAGTTGAAAGTATAAATTTTCC
6894336 CTACACAAGA
Statistics
Matches: 94, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
115 1 0.01
116 45 0.48
117 44 0.47
118 4 0.04
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (117 bp):
AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTCAAGATCAAAGTTTCAAAAAAAA
ATATTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCTTAGAAATAAATTTTC
Found at i:6895742 original size:16 final size:16
Alignment explanation
Indices: 6895694--6895742 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
6895684 GTAGTGCTAG
6895694 TATAAC-ATAAAGTATA
1 TATAACTATAAA-TATA
*
6895710 AATAA-TATAATATATA
1 TATAACTATAA-ATATA
6895726 TATAACTATAAATATA
1 TATAACTATAAATATA
6895742 T
1 T
6895743 TTTTATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 22 0.79
17 6 0.21
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (16 bp):
TATAACTATAAATATA
Found at i:6895956 original size:2 final size:2
Alignment explanation
Indices: 6895949--6895973 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6895939 ATAAATGTAG
6895949 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
6895974 TTTTTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6908261 original size:17 final size:17
Alignment explanation
Indices: 6908213--6908252 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
6908203 TAAATTTATA
*
6908213 TAAATTTAAAAA-AATT
1 TAAACTTAAAAATAATT
6908229 TAAACTTAAAAATAATT
1 TAAACTTAAAAATAATT
6908246 TAAACTT
1 TAAACTT
6908253 GAAATTAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 11 0.50
17 11 0.50
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (17 bp):
TAAACTTAAAAATAATT
Found at i:6909542 original size:29 final size:28
Alignment explanation
Indices: 6909506--6909560 Score: 83
Period size: 29 Copynumber: 1.9 Consensus size: 28
6909496 TTATATGAAT
6909506 TTTATTAAAATAAATATATGTTTAATTTA
1 TTTATTAAAATAAATATATG-TTAATTTA
* *
6909535 TTTATTAACATTAATATATGTTAATT
1 TTTATTAAAATAAATATATGTTAATT
6909561 ACAGACACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 6 0.25
29 18 0.75
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (28 bp):
TTTATTAAAATAAATATATGTTAATTTA
Found at i:6913541 original size:3 final size:3
Alignment explanation
Indices: 6913533--6913564 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
6913523 CTGATGGGTT
6913533 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6913565 TTGGCTAGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:6915606 original size:16 final size:16
Alignment explanation
Indices: 6915581--6915613 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6915571 AAAATCATCG
6915581 TAAATCATCATTATCA
1 TAAATCATCATTATCA
*
6915597 TAAATTATCATTATCA
1 TAAATCATCATTATCA
6915613 T
1 T
6915614 TCAAATCGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAATCATCATTATCA
Found at i:6919560 original size:3 final size:3
Alignment explanation
Indices: 6919552--6919583 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
6919542 CTGATGGGTT
6919552 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6919584 TTGGCTAGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:6921620 original size:16 final size:16
Alignment explanation
Indices: 6921595--6921627 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6921585 AAAATCATCG
6921595 TAAATCATCATTATCA
1 TAAATCATCATTATCA
*
6921611 TAAATTATCATTATCA
1 TAAATCATCATTATCA
6921627 T
1 T
6921628 TCAAATCGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.42, C:0.15, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAATCATCATTATCA
Found at i:6927366 original size:9 final size:10
Alignment explanation
Indices: 6927352--6927410 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 10
6927342 CTTCTTCTTT
6927352 TGTATT-TTA
1 TGTATTATTA
6927361 TGTATTA-TA
1 TGTATTATTA
6927370 T-TATTTATTA
1 TGTA-TTATTA
6927380 T-TATTATTA
1 TGTATTATTA
6927389 TGTATTAATATA
1 TGTATT-AT-TA
6927401 TGTATATATT
1 TGTAT-TATT
6927411 TATTTATTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
8 2 0.05
9 19 0.44
10 9 0.21
11 3 0.07
12 9 0.21
13 1 0.02
ACGTcount: A:0.32, C:0.00, G:0.07, T:0.61
Consensus pattern (10 bp):
TGTATTATTA
Found at i:6927432 original size:35 final size:35
Alignment explanation
Indices: 6927413--6927497 Score: 50
Period size: 35 Copynumber: 2.4 Consensus size: 35
6927403 TATATATTTA
* *
6927413 TTTATTTATTTTTTGTTAATATTTATGTGTAT-TTTA
1 TTTATTTATTTTTTATTAATA--TATGTATATATTTA
* * * * *
6927449 -TTATTTATGTATTAATACTAATATGTATATATATA
1 TTTATTTATTTTTTATTAAT-ATATGTATATATTTA
6927484 TTT-TTTATCTTTTT
1 TTTATTTAT-TTTTT
6927498 TATTTTATTT
Statistics
Matches: 36, Mismatches: 9, Indels: 8
0.68 0.17 0.15
Matches are distributed among these distances:
34 8 0.22
35 22 0.61
36 6 0.17
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (35 bp):
TTTATTTATTTTTTATTAATATATGTATATATTTA
Found at i:6927461 original size:16 final size:16
Alignment explanation
Indices: 6927357--6927461 Score: 60
Period size: 16 Copynumber: 6.6 Consensus size: 16
6927347 TCTTTTGTAT
*
6927357 TTTATGTATTATATTA
1 TTTATGTATTTTATTA
6927373 TTTAT-TA--TTATTA
1 TTTATGTATTTTATTA
*
6927386 -TTATGTA-TTAATATA
1 TTTATGTATTTTAT-TA
* *
6927401 TGTATATA-TTTATTTA
1 TTTATGTATTTTA-TTA
* * *
6927417 TTTATTTTTTGTTAATA
1 TTTATGTATT-TTATTA
6927434 TTTATGTGTATTTTATTA
1 TTTA--TGTATTTTATTA
6927452 TTTATGTATT
1 TTTATGTATT
6927462 AATACTAATA
Statistics
Matches: 68, Mismatches: 12, Indels: 18
0.69 0.12 0.18
Matches are distributed among these distances:
12 4 0.06
13 7 0.10
14 3 0.04
15 4 0.06
16 26 0.38
17 8 0.12
18 12 0.18
19 4 0.06
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.65
Consensus pattern (16 bp):
TTTATGTATTTTATTA
Found at i:6927520 original size:8 final size:8
Alignment explanation
Indices: 6927484--6927521 Score: 58
Period size: 9 Copynumber: 4.5 Consensus size: 8
6927474 TATATATATA
6927484 TTTTTTAT
1 TTTTTTAT
6927492 CTTTTTTAT
1 -TTTTTTAT
6927501 TTTATTTAT
1 TTT-TTTAT
6927510 TTTTTTAT
1 TTTTTTAT
6927518 TTTT
1 TTTT
6927522 ACTTATCTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 12 0.43
9 16 0.57
ACGTcount: A:0.13, C:0.03, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTAT
Found at i:6927522 original size:18 final size:18
Alignment explanation
Indices: 6927487--6927520 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
6927477 ATATATATTT
6927487 TTTATCTTTTTTATTTTA
1 TTTATCTTTTTTATTTTA
6927505 TTTAT-TTTTTTATTTT
1 TTTATCTTTTTTATTTT
6927521 TACTTATCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (18 bp):
TTTATCTTTTTTATTTTA
Found at i:6927527 original size:18 final size:18
Alignment explanation
Indices: 6927488--6927529 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
6927478 TATATATTTT
*
6927488 TTATCTTTTTTATTTTAT
1 TTATCTTTTTTATTTTAC
6927506 TTAT-TTTTTTATTTTTAC
1 TTATCTTTTTTA-TTTTAC
6927524 TTATCT
1 TTATCT
6927530 AATTATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 7 0.33
18 13 0.62
19 1 0.05
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.76
Consensus pattern (18 bp):
TTATCTTTTTTATTTTAC
Found at i:6928094 original size:19 final size:20
Alignment explanation
Indices: 6928070--6928115 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
6928060 TTTCGGCCAA
6928070 ATTCCGGTGAAA-TTTCCAG
1 ATTCCGGTGAAATTTTCCAG
6928089 ATTCCGGTGAAATTTTCCAG
1 ATTCCGGTGAAATTTTCCAG
*
6928109 AATCCGG
1 ATTCCGG
6928116 CACCGGTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (20 bp):
ATTCCGGTGAAATTTTCCAG
Found at i:6928477 original size:27 final size:25
Alignment explanation
Indices: 6928428--6928499 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 25
6928418 CCGCTCTAGG
*
6928428 TTTTTTTTTTTTTTCTTTCTTTGAA
1 TTTTTTTTTTTTTTCTTTATTTGAA
*
6928453 TTTTTTTTCTTTCTTTGTTTATTTG--
1 TTTTTTTT-TTT-TTTCTTTATTTGAA
* *
6928478 TTTATTTTATTTTTTATTTATT
1 TTT-TTTTTTTTTTTCTTTATT
6928500 AGATTAGGTT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
24 9 0.22
25 14 0.35
26 7 0.17
27 10 0.25
ACGTcount: A:0.10, C:0.06, G:0.04, T:0.81
Consensus pattern (25 bp):
TTTTTTTTTTTTTTCTTTATTTGAA
Found at i:6928618 original size:27 final size:27
Alignment explanation
Indices: 6928588--6928676 Score: 65
Period size: 27 Copynumber: 3.2 Consensus size: 27
6928578 AGAAAAATAT
6928588 ATTTTTAGGGAAAAGTTGAAAGTATCA
1 ATTTTTAGGGAAAAGTTGAAAGTATCA
** * * **
6928615 ATTTTCCTTAGAAATAAATTTTCAAAAAAT--
1 A-TTT--TTAGGGA-AAA-GTTGAAAGTATCA
6928645 ATTTTTAGGGAAAAGTTGAAAGTATCA
1 ATTTTTAGGGAAAAGTTGAAAGTATCA
6928672 ATTTT
1 ATTTT
6928677 CCTTAGAAAT
Statistics
Matches: 43, Mismatches: 12, Indels: 14
0.62 0.17 0.20
Matches are distributed among these distances:
25 7 0.16
26 3 0.07
27 11 0.26
28 3 0.07
29 3 0.07
30 6 0.14
31 3 0.07
32 7 0.16
ACGTcount: A:0.42, C:0.06, G:0.15, T:0.38
Consensus pattern (27 bp):
ATTTTTAGGGAAAAGTTGAAAGTATCA
Found at i:6928647 original size:57 final size:57
Alignment explanation
Indices: 6928580--6928782 Score: 318
Period size: 57 Copynumber: 3.5 Consensus size: 57
6928570 ATTCCAAAAG
6928580 AAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
1 AAAAA-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
*
6928638 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
* * *
6928695 AAAAAATATTTTTGGGGAAGAGTTGAAAGTATCAATTTTCCTCAGAAATAAA-TTTC
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
6928751 AAAAAAAAAATATTTTTAGGGAAAAGTTGAAA
1 ----AAAAAATATTTTTAGGGAAAAGTTGAAA
6928783 ATTGAATATT
Statistics
Matches: 134, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
56 3 0.02
57 100 0.75
58 5 0.04
60 26 0.19
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (57 bp):
AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
Found at i:6928815 original size:145 final size:145
Alignment explanation
Indices: 6928642--6928929 Score: 431
Period size: 147 Copynumber: 2.0 Consensus size: 145
6928632 ATTTTCAAAA
6928642 AATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAAT-ATTT
1 AATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAATGATTT
* *
6928706 TTGGGGAAGAGTTGAAAGTATCAATTTTCCTCAG-AAAT-AAA-TTTCAAAAAAAAAATATTTTT
66 TTGAGGAAAAGTTGAAAGTATCAATTTTCCT-AGAAAATCAAATTTTC---AAAAAAATATTTTT
6928768 AGGGAAAAGTTGAAAATTG
127 AGGGAAAAGTTGAAAATTG
* * *
6928787 AATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAATAAATTTTCAAAAAATGGGTT
1 AATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAAT-GATT
* *
6928852 TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAATTTTCAAAAAAATATTTTTGG
65 TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAATC-AAATTTTCAAAAAAATATTTTTAG
6928917 GGAAAAGTTGAAA
129 GGAAAAGTTGAAA
6928930 GTATCAATTT
Statistics
Matches: 130, Mismatches: 7, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
145 58 0.45
146 1 0.01
147 64 0.49
149 3 0.02
150 4 0.03
ACGTcount: A:0.43, C:0.06, G:0.16, T:0.35
Consensus pattern (145 bp):
AATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAATGATTT
TTGAGGAAAAGTTGAAAGTATCAATTTTCCTAGAAAATCAAATTTTCAAAAAAATATTTTTAGGG
AAAAGTTGAAAATTG
Found at i:6928864 original size:59 final size:59
Alignment explanation
Indices: 6928787--6928942 Score: 212
Period size: 59 Copynumber: 2.6 Consensus size: 59
6928777 TTGAAAATTG
6928787 AATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTTCTT-AGAAAT-AAATTTTC-AAAA
1 AATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTTCTTGA-AAATCAAATTTTCAAAAA
* *
6928844 AATGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAATTTTCAAAAA
1 AAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATC-AAATTTTCAAAAA
*
6928906 AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTC
1 AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC
6928943 CTACAAAAAA
Statistics
Matches: 87, Mismatches: 5, Indels: 11
0.84 0.05 0.11
Matches are distributed among these distances:
57 3 0.03
59 36 0.41
60 33 0.38
61 8 0.09
62 7 0.08
ACGTcount: A:0.40, C:0.06, G:0.16, T:0.37
Consensus pattern (59 bp):
AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAATTTTCAAAAA
Found at i:6934101 original size:42 final size:42
Alignment explanation
Indices: 6934055--6934543 Score: 673
Period size: 42 Copynumber: 11.8 Consensus size: 42
6934045 AGTATTTAAA
*
6934055 TTTCCAAAGTC-TCGTTGCCTCTGTTTAGAGGAGCAATTTACT
1 TTTCCAAAGTCGT-GGTGCCTCTGTTTAGAGGAGCAATTTACT
*
6934097 TTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACT
1 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
*
6934139 TTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGTAATTTACT
1 TTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
* * *
6934179 TTTCTAAAGTCGTGGTACCTCTTTTTAGAGGAGCAATTTACT
1 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
*
6934221 TTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTATT
1 TTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
6934261 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
1 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
* *
6934303 TTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACT
1 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
* *
6934345 TTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAG-AAATTATT
1 TTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
*
6934384 TTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTAC-
1 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
6934425 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-
1 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
* *
6934466 TTTCCAAAAGTTGTGGTGCCTCTGTTTAGATGAGCAATTTA-T
1 TTTCC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
* *
6934508 GTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC
1 -TTTC-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
6934544 TTTGGTAAAA
Statistics
Matches: 401, Mismatches: 28, Indels: 35
0.86 0.06 0.08
Matches are distributed among these distances:
39 13 0.03
40 85 0.21
41 85 0.21
42 187 0.47
43 30 0.07
44 1 0.00
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (42 bp):
TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
Found at i:6934158 original size:82 final size:83
Alignment explanation
Indices: 6934059--6934543 Score: 654
Period size: 82 Copynumber: 5.9 Consensus size: 83
6934049 TTTAAATTTC
6934059 CAAAGTCTCGT-TGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTT
1 CAAAGT-TCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTT
6934123 AGAGGAGCAATTTACTTTT
65 AGAGGAGCAATTTACTTTT
* * *
6934142 CAAAGTTCGT-TGCCTCTGTTTAGAGGAGTAATTTACTTTTCTAAAGTCGTGGTACCTCTTTTTA
1 CAAAGTTCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTA
6934206 GAGGAGCAATTTACTTTT
66 GAGGAGCAATTTACTTTT
* *
6934224 CAAAGTTCGT-TGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTA
1 CAAAGTTCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTA
6934288 GAGGAGCAATTTACTTTTT
66 GAGGAGCAATTTAC-TTTT
* *
6934307 CAAAG-TCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTTCGT--TGCCTCTGTT
1 CAAAGTTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAG-TCGTGGTACCTCTGTT
* *
6934368 TAGAGGAG-AAATTATTTTT
64 TAGAGGAGCAATTTACTTTT
* *
6934387 CCAAAG-TCGTGGTGCCTCTATTTAGAGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTT
1 -CAAAGTTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTT
*
6934450 TAGAGGAGCAATTTACTTTC
64 TAGAGGAGCAATTTACTTTT
* *
6934470 CAAAAGTT-GTGGTGCCTCTGTTTAGATGAGCAATTTA-TGTTTCTCAAAGTCGTTG-AGCCTCT
1 C-AAAGTTCGT-GTGCCTCTGTTTAGAGGAGCAATTTACT-TTTC-CAAAGTCGTGGTA-CCTCT
6934532 GTTTAGAGGAGC
61 GTTTAGAGGAGC
6934544 TTTGGTAAAA
Statistics
Matches: 366, Mismatches: 21, Indels: 28
0.88 0.05 0.07
Matches are distributed among these distances:
80 11 0.03
81 45 0.12
82 187 0.51
83 59 0.16
84 37 0.10
85 27 0.07
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (83 bp):
CAAAGTTCGTGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTA
GAGGAGCAATTTACTTTT
Found at i:6934610 original size:23 final size:21
Alignment explanation
Indices: 6934551--6934613 Score: 101
Period size: 22 Copynumber: 3.0 Consensus size: 21
6934541 AGCTTTGGTA
6934551 AAAAAAAAAAAAA-AAAAAAA
1 AAAAAAAAAAAAACAAAAAAA
6934571 AAAAAAAAAAAAACAAAAAACA
1 AAAAAAAAAAAAACAAAAAA-A
*
6934593 AAAAAAAAAAAAACCAAAAAA
1 AAAAAAAAAAAAACAAAAAAA
6934614 TGACAATGTT
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
20 13 0.32
21 7 0.17
22 20 0.50
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (21 bp):
AAAAAAAAAAAAACAAAAAAA
Found at i:6934613 original size:1 final size:1
Alignment explanation
Indices: 6934550--6934605 Score: 94
Period size: 1 Copynumber: 56.0 Consensus size: 1
6934540 GAGCTTTGGT
* *
6934550 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAACAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6934606 CCAAAAAATG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.96, C:0.04, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:6934910 original size:16 final size:16
Alignment explanation
Indices: 6934806--6934910 Score: 60
Period size: 16 Copynumber: 6.6 Consensus size: 16
6934796 TTTTTTGTAT
*
6934806 TTTATGTATTGTATTA
1 TTTATGTATTTTATTA
6934822 TTTAT-TA--TTATTA
1 TTTATGTATTTTATTA
*
6934835 -TTATGTA-TTAATATA
1 TTTATGTATTTTAT-TA
* *
6934850 TGTATATA-TTTATTTA
1 TTTATGTATTTTA-TTA
* * *
6934866 TTTATTTTTTGTTAATA
1 TTTATGTATT-TTATTA
6934883 TTTATGTGTATTTTATTA
1 TTTA--TGTATTTTATTA
6934901 TTTATGTATT
1 TTTATGTATT
6934911 ATTACTAATA
Statistics
Matches: 68, Mismatches: 12, Indels: 18
0.69 0.12 0.18
Matches are distributed among these distances:
12 4 0.06
13 7 0.10
14 3 0.04
15 4 0.06
16 26 0.38
17 8 0.12
18 12 0.18
19 4 0.06
ACGTcount: A:0.28, C:0.00, G:0.08, T:0.65
Consensus pattern (16 bp):
TTTATGTATTTTATTA
Found at i:6934972 original size:18 final size:18
Alignment explanation
Indices: 6934937--6934970 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6934927 TATATATATT
*
6934937 TTTATCTTTTTTATTTTA
1 TTTATCTTTTGTATTTTA
6934955 TTTAT-TTTTGTATTTT
1 TTTATCTTTTGTATTTT
6934971 TACTTATCTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.15, C:0.03, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTATCTTTTGTATTTTA
Found at i:6935009 original size:58 final size:56
Alignment explanation
Indices: 6934891--6935011 Score: 131
Period size: 58 Copynumber: 2.1 Consensus size: 56
6934881 TATTTATGTG
* *
6934891 TATTTTATTATTTATGTATTATTACTAATATGTATATATATATATTTTTATCTTTTT
1 TATTTTATTATTTATGTATTATTACT-ATATCTATATATATATATTTTTATCTTTAT
* *
6934948 TATTTTATTTATTTTTGTATTTTTACT-TATCTAATTATATATATGATTTTT-T-TATTAT
1 TATTTTA-TTATTTATGTATTATTACTATATCT-A-TATATATAT-ATTTTTATCT-TTAT
6935006 TATTTT
1 TATTTT
6935012 TATCCTATAA
Statistics
Matches: 55, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
56 4 0.07
57 9 0.16
58 36 0.65
59 6 0.11
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.66
Consensus pattern (56 bp):
TATTTTATTATTTATGTATTATTACTATATCTATATATATATATTTTTATCTTTAT
Found at i:6935407 original size:31 final size:32
Alignment explanation
Indices: 6935372--6935436 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 32
6935362 ATTTCCAGAA
*
6935372 TCCGGCGAA-AATTTTGGCGAA-ATTTGAA-TTT
1 TCCGGC-AACAATTTAGGCGAACA-TTGAAGTTT
6935403 TCCGGCAACAATTTAGGCGAACATTGAAGTTT
1 TCCGGCAACAATTTAGGCGAACATTGAAGTTT
6935435 TC
1 TC
6935437 GACGAAGAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
30 2 0.07
31 22 0.73
32 6 0.20
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.32
Consensus pattern (32 bp):
TCCGGCAACAATTTAGGCGAACATTGAAGTTT
Found at i:6935892 original size:12 final size:11
Alignment explanation
Indices: 6935870--6935916 Score: 51
Period size: 12 Copynumber: 4.1 Consensus size: 11
6935860 TTTCTTTGAA
6935870 TTTTT-TTTAT
1 TTTTTATTTAT
*
6935880 TTCTTTGTTTAT
1 TT-TTTATTTAT
6935892 TTGTTTATTTTAT
1 TT-TTTA-TTTAT
6935905 TTTTTATTTAT
1 TTTTTATTTAT
6935916 T
1 T
6935917 AGATTAGGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
10 2 0.06
11 9 0.28
12 14 0.44
13 7 0.22
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.81
Consensus pattern (11 bp):
TTTTTATTTAT
Found at i:6936222 original size:120 final size:118
Alignment explanation
Indices: 6935985--6936334 Score: 505
Period size: 119 Copynumber: 2.9 Consensus size: 118
6935975 TAAAAATAAA
*
6935985 AAATTCCAAAAAAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-AGAAAT-A
1 AAATTTCAAAAAAAAAATAT-TTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCA
* * *
6936048 AATTTCCAAAAAATATTTTTGGGGAAGAGTTGAAAGTATCAATTTTCCTCAGAAAT
63 AATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCAGAAAT
6936104 AAATTTCAAAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAA
1 AAATTTCAAAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAA
*
6936169 TTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAAT
65 TTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCAGAAAT
*
6936224 AAATTTTC----AAAAAATAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCG
1 AAA-TTTCAAAAAAAAAATA-TTTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-
*
6936285 AAATTTCCAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTC
62 AAATTT-CAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTC
6936335 CTACAAAAAA
Statistics
Matches: 215, Mismatches: 8, Indels: 16
0.90 0.03 0.07
Matches are distributed among these distances:
117 41 0.19
118 12 0.06
119 108 0.50
120 50 0.23
121 4 0.02
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.34
Consensus pattern (118 bp):
AAATTTCAAAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAT
TTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCAGAAAT
Found at i:6936232 original size:59 final size:58
Alignment explanation
Indices: 6935995--6936332 Score: 457
Period size: 60 Copynumber: 5.7 Consensus size: 58
6935985 AAATTCCAAA
*
6935995 AAAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
1 AAAAAAA-ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
* * *
6936054 -CAAAAAATATTTTTGGGGAAGAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
*
6936111 AAAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCAAAATTTC
1 --AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTC
*
6936173 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAATAAATTTTC
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTC
* ** *
6936232 AAAAAATAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTC
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTC
* *
6936292 CAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
6936333 TCCTACAAAA
Statistics
Matches: 247, Mismatches: 21, Indels: 21
0.85 0.07 0.07
Matches are distributed among these distances:
57 48 0.19
58 9 0.04
59 49 0.20
60 130 0.53
61 4 0.02
62 7 0.03
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.35
Consensus pattern (58 bp):
AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
Found at i:6938728 original size:12 final size:12
Alignment explanation
Indices: 6938711--6938740 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
6938701 ATTTTATTTA
*
6938711 AATAAAATAATT
1 AATAAAATAATC
6938723 AATAAAATAATC
1 AATAAAATAATC
6938735 AATAAA
1 AATAAA
6938741 GAAATTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (12 bp):
AATAAAATAATC
Found at i:6939482 original size:30 final size:30
Alignment explanation
Indices: 6939446--6939505 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
6939436 ATTCTGACAT
* * *
6939446 GCAAAACTATATTCCTAGCCATATGATTGA
1 GCAAAACTACATGCCTAGCCACATGATTGA
6939476 GCAAAACTACATGCCTAGCCACATGATTGA
1 GCAAAACTACATGCCTAGCCACATGATTGA
6939506 ACACTGGCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (30 bp):
GCAAAACTACATGCCTAGCCACATGATTGA
Found at i:6940264 original size:73 final size:73
Alignment explanation
Indices: 6940103--6940285 Score: 237
Period size: 73 Copynumber: 2.5 Consensus size: 73
6940093 TAAAGTTGAT
* * * *
6940103 AATGTTTCTAAGTTAGAAAATGTAGTTTTTGTTGAAAATAGGAAAAAATACTTTTTAGAATTCAA
1 AATGTTTCTAAGATAGAAAATATAGTTTTTGTTGAAAACAGAAAAAAATACTTTTTAGAATTCAA
6940168 CAAAGATG
66 CAAAGATG
* * * *
6940176 AAT-TTTCTAAAATAGAAAACATAATTTTTGTTGAAAACATGAAAAAAATA-TTTTTCATAATTC
1 AATGTTTCTAAGATAGAAAATATAGTTTTTGTTGAAAACA-GAAAAAAATACTTTTT-AGAATTC
6940239 AACAAAGATG
64 AACAAAGATG
* *
6940249 -ATGTTTCTAAGATAGAAAATATGGTCTTTGTTGAAAA
1 AATGTTTCTAAGATAGAAAATATAGTTTTTGTTGAAAA
6940286 TACGATGTCT
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
72 37 0.39
73 57 0.61
ACGTcount: A:0.44, C:0.07, G:0.14, T:0.36
Consensus pattern (73 bp):
AATGTTTCTAAGATAGAAAATATAGTTTTTGTTGAAAACAGAAAAAAATACTTTTTAGAATTCAA
CAAAGATG
Found at i:6940988 original size:27 final size:28
Alignment explanation
Indices: 6940948--6941007 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 28
6940938 TGCATCTCTA
6940948 AAGATTTGGATAGAGATTTATTTGA-GAT
1 AAGATTTGGATAGAGA-TTATTTGAGGAT
* *
6940976 AAGA-TTGGCTAGATATTATTTGATGGAT
1 AAGATTTGGATAGAGATTATTTGA-GGAT
6941004 AAGA
1 AAGA
6941008 ATTGTACGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 8 0.29
27 9 0.32
28 11 0.39
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.37
Consensus pattern (28 bp):
AAGATTTGGATAGAGATTATTTGAGGAT
Found at i:6943086 original size:133 final size:131
Alignment explanation
Indices: 6942847--6943096 Score: 376
Period size: 133 Copynumber: 1.9 Consensus size: 131
6942837 TAAGATTTCT
* * *
6942847 ATTTATACTTTCCATTTTATGAGGCCAAAAAATTTTTCATTTTACACTTGTTAGTTAACAATTTC
1 ATTTATACTTTCCATTTTATGAGGCCAAAAAAATTTTCATTCTACACTTATTAGTTAACAATTTC
* *
6942912 ATTTTAGTAACAATAACATGGGCGTATGGCACATACATATAGACTATAGACTTCTAAATATCTTC
66 ATTTTAGTAACAATAACATAGGCATATGGCACATACATATAGACTATAGACTTCTAAATATCTTC
6942977 A
131 A
* *
6942978 ATTTATACCTTT-CATTTTATGAGGTCATGAAAAAATTTTCATTCTACACTTATTAGTTAATAAT
1 ATTTATA-CTTTCCATTTTATGAGGCCA--AAAAAATTTTCATTCTACACTTATTAGTTAACAAT
* * *
6943042 TTCATTTTAGTAATAATAACATAGGCATATGGTACATACTTATAGACTATAGACT
63 TTCATTTTAGTAACAATAACATAGGCATATGGCACATACATATAGACTATAGACT
6943097 ATTGTTGTAT
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
131 21 0.20
132 4 0.04
133 81 0.76
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.40
Consensus pattern (131 bp):
ATTTATACTTTCCATTTTATGAGGCCAAAAAAATTTTCATTCTACACTTATTAGTTAACAATTTC
ATTTTAGTAACAATAACATAGGCATATGGCACATACATATAGACTATAGACTTCTAAATATCTTC
A
Found at i:6943758 original size:12 final size:13
Alignment explanation
Indices: 6943743--6943802 Score: 56
Period size: 12 Copynumber: 4.8 Consensus size: 13
6943733 AATATTATTT
6943743 TAAATA-TAAATA
1 TAAATATTAAATA
6943755 TAAA-ATTAAATA
1 TAAATATTAAATA
* *
6943767 TATATA-AAAATA
1 TAAATATTAAATA
*
6943779 TATATAATTAAATA
1 TAAAT-ATTAAATA
6943793 TAAA-ATTAAA
1 TAAATATTAAA
6943803 AAAATAATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
11 1 0.03
12 29 0.73
13 2 0.05
14 8 0.20
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (13 bp):
TAAATATTAAATA
Found at i:6943783 original size:16 final size:16
Alignment explanation
Indices: 6943746--6943784 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
6943736 ATTATTTTAA
* *
6943746 ATATAAATATAAAATT
1 ATATATATATAAAAAT
*
6943762 AAATATATATAAAAAT
1 ATATATATATAAAAAT
6943778 ATATATA
1 ATATATA
6943785 ATTAAATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATATATATATAAAAAT
Found at i:6943795 original size:22 final size:22
Alignment explanation
Indices: 6943742--6943803 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
6943732 AAATATTATT
*
6943742 TTAAATATAAATATAAAATTAA
1 TTAAATATAAAAATAAAATTAA
* * *
6943764 ATATATATAAAAAT-ATATATAA
1 TTAAATATAAAAATAAAAT-TAA
*
6943786 TTAAATATAAAATTAAAA
1 TTAAATATAAAAATAAAA
6943804 AAATAATTTT
Statistics
Matches: 30, Mismatches: 8, Indels: 3
0.73 0.20 0.07
Matches are distributed among these distances:
21 3 0.10
22 25 0.83
23 2 0.07
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
TTAAATATAAAAATAAAATTAA
Found at i:6944098 original size:21 final size:21
Alignment explanation
Indices: 6944072--6944119 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
6944062 TTATTGATGA
6944072 AATTTT-TCATCAGTAAAAGTC
1 AATTTTAT-ATCAGTAAAAGTC
*
6944093 AATTTTATGTCAGTAAAAGTC
1 AATTTTATATCAGTAAAAGTC
6944114 AATTTT
1 AATTTT
6944120 CGTTAGTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 24 0.96
22 1 0.04
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (21 bp):
AATTTTATATCAGTAAAAGTC
Found at i:6944393 original size:20 final size:20
Alignment explanation
Indices: 6944340--6944382 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
6944330 AATCCATCGA
* *
6944340 TAATAATAAAATTTCATTAG
1 TAATAATCAAATTTCATCAG
6944360 TAATAATCAAATTTCATCAG
1 TAATAATCAAATTTCATCAG
6944380 TAA
1 TAA
6944383 AATTATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.09, G:0.05, T:0.37
Consensus pattern (20 bp):
TAATAATCAAATTTCATCAG
Found at i:6944639 original size:21 final size:22
Alignment explanation
Indices: 6944604--6944652 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
6944594 AATATAATAC
* *
6944604 TAAAAGATATTTATAACTTCCA
1 TAAAAGATATCTATAACATCCA
*
6944626 TAAAA-ATATCTATAACATCTA
1 TAAAAGATATCTATAACATCCA
6944647 TAAAAG
1 TAAAAG
6944653 TCCTAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.51, C:0.12, G:0.04, T:0.33
Consensus pattern (22 bp):
TAAAAGATATCTATAACATCCA
Found at i:6945474 original size:158 final size:158
Alignment explanation
Indices: 6945156--6945549 Score: 556
Period size: 158 Copynumber: 2.5 Consensus size: 158
6945146 GTTTATCCTA
* * * * *
6945156 CAATGTTTAG-CTTTCAATTACTACATTACCTATTTCATCAACAATCAAAATACATAACCAAAAT
1 CAATATTTAGTCTTTCAATTACTACACTATCTATTTCATCAACAATCACAATACACAACCAAAAT
** * * *
6945220 CACAAAACAAAATATGCAATAATTTTCACCTTCACAAAGTCATTGCATCTCAATAAGCACATAAC
66 CACAAAACAAAATACACAATAATTTTCACATTCACAAAGTCATTACATCTCAATAAGCACAAAAC
*
6945285 ACTATATAGTTCAATGCCATACATCTCG
131 ACTATATAGTTCAATACCATACATCTCG
* * *
6945313 CAATATTTAGTCTTTTAATTACTACACTATCTATTTTATCAATAATCACAATACACAACCAAAAT
1 CAATATTTAGTCTTTCAATTACTACACTATCTATTTCATCAACAATCACAATACACAACCAAAAT
* *
6945378 CACAAATCAAAATACACAATAGTTTTCACATTCACAAAGTCATTACATCTCAATAAGCACAAAAC
66 CACAAAACAAAATACACAATAATTTTCACATTCACAAAGTCATTACATCTCAATAAGCACAAAAC
* * *
6945443 ACTATATAGTTCAATACCATTCTTCTTG
131 ACTATATAGTTCAATACCATACATCTCG
* * * *
6945471 CAATATTTAGTCTTTCAATTATTACACTATCCATTTCATCAACAATCACAATACACAATCAGAAT
1 CAATATTTAGTCTTTCAATTACTACACTATCTATTTCATCAACAATCACAATACACAACCAAAAT
* *
6945536 CAGAAAATAAAATA
66 CACAAAACAAAATA
6945550 AGCATTATTT
Statistics
Matches: 207, Mismatches: 29, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
157 9 0.04
158 198 0.96
ACGTcount: A:0.42, C:0.22, G:0.05, T:0.31
Consensus pattern (158 bp):
CAATATTTAGTCTTTCAATTACTACACTATCTATTTCATCAACAATCACAATACACAACCAAAAT
CACAAAACAAAATACACAATAATTTTCACATTCACAAAGTCATTACATCTCAATAAGCACAAAAC
ACTATATAGTTCAATACCATACATCTCG
Found at i:6953275 original size:19 final size:19
Alignment explanation
Indices: 6953251--6953287 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
6953241 TATGGAGCGA
6953251 ATATGGGA-GAAGAGAGAAG
1 ATATGGGAGGAA-AGAGAAG
6953270 ATATGGGAGGAAAGAGAA
1 ATATGGGAGGAAAGAGAA
6953288 ACTAAAGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.49, C:0.00, G:0.41, T:0.11
Consensus pattern (19 bp):
ATATGGGAGGAAAGAGAAG
Found at i:6954104 original size:14 final size:15
Alignment explanation
Indices: 6954082--6954114 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
6954072 TAATATATAA
6954082 AAAATTTTAAAATTT
1 AAAATTTTAAAATTT
*
6954097 AAAA-TTTAAACTTT
1 AAAATTTTAAAATTT
6954111 AAAA
1 AAAA
6954115 ATAGAAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (15 bp):
AAAATTTTAAAATTT
Found at i:6962024 original size:2 final size:2
Alignment explanation
Indices: 6962017--6962042 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6962007 GTACAACTAA
6962017 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6962043 TGGGATTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6964374 original size:15 final size:15
Alignment explanation
Indices: 6964354--6964391 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
6964344 AGATAAAATG
*
6964354 ATATTATTTAATTTA
1 ATATTATTTAATTGA
6964369 ATATTATTTAATTGA
1 ATATTATTTAATTGA
6964384 ATATTATT
1 ATATTATT
6964392 CATAATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
ATATTATTTAATTGA
Found at i:6964415 original size:10 final size:10
Alignment explanation
Indices: 6964400--6964432 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
6964390 TTCATAATAT
6964400 TATCTTATCC
1 TATCTTATCC
6964410 TATCTTATCC
1 TATCTTATCC
*
6964420 TATATTATCC
1 TATCTTATCC
6964430 TAT
1 TAT
6964433 TATATTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (10 bp):
TATCTTATCC
Found at i:6965456 original size:23 final size:22
Alignment explanation
Indices: 6965434--6965474 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
6965424 GATCTATTTA
*
6965434 TTATTTT-TTTT-TTCCTTTTT
1 TTATTTTATTTTATTTCTTTTT
6965454 TTATTTTATTTTATTTCTTTT
1 TTATTTTATTTTATTTCTTTT
6965475 CTTCTTTCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 4 0.22
22 7 0.39
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (22 bp):
TTATTTTATTTTATTTCTTTTT
Found at i:6966431 original size:27 final size:24
Alignment explanation
Indices: 6966369--6966428 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
6966359 TTTGTTTTTT
* *
6966369 ATTTTTTTTAAATAAATAATAATA
1 ATTTTTTTAAAATAAAAAATAATA
6966393 ATTTTTTTAAAATAAAAAATAATA
1 ATTTTTTTAAAATAAAAAATAATA
6966417 ATTTTTTTAAAA
1 ATTTTTTTAAAA
6966429 AAAGAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
ATTTTTTTAAAATAAAAAATAATA
Found at i:6968717 original size:52 final size:54
Alignment explanation
Indices: 6968660--6968771 Score: 158
Period size: 52 Copynumber: 2.1 Consensus size: 54
6968650 CATAAGAATT
* *
6968660 AAATTGTAATAACAATAAAATATATCTTAGAAAAAATTTA-T-AAACAAA-AAAA
1 AAATTGCAATAACAATAAAATATATCTTAGAAAAAAGTTATTGAAA-AAATAAAA
**
6968712 AAATTGCAATAGTAATAAAATATATCTTAGAAAAAAGTTATTGAAAAAATAAAA
1 AAATTGCAATAACAATAAAATATATCTTAGAAAAAAGTTATTGAAAAAATAAAA
6968766 AAATTG
1 AAATTG
6968772 ATGTATAACA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
52 36 0.68
53 4 0.08
54 13 0.25
ACGTcount: A:0.61, C:0.04, G:0.07, T:0.28
Consensus pattern (54 bp):
AAATTGCAATAACAATAAAATATATCTTAGAAAAAAGTTATTGAAAAAATAAAA
Found at i:6969570 original size:14 final size:14
Alignment explanation
Indices: 6969545--6969578 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
6969535 TTGCAACTTA
6969545 ATTTATATTGGTTTT
1 ATTTATATTGG-TTT
6969560 ATTTA-ATTGGTTT
1 ATTTATATTGGTTT
6969573 ATTTAT
1 ATTTAT
6969579 TGCTAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 8 0.44
14 5 0.28
15 5 0.28
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.65
Consensus pattern (14 bp):
ATTTATATTGGTTT
Found at i:6974429 original size:17 final size:18
Alignment explanation
Indices: 6974395--6974434 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
6974385 ATATAATGAA
6974395 TATTTTTAAATCT-TTTT
1 TATTTTTAAATCTATTTT
6974412 TATTTTTAAAT-TAATTTT
1 TATTTTTAAATCT-ATTTT
6974430 TATTT
1 TATTT
6974435 ATTTTTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.05
17 11 0.52
18 9 0.43
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (18 bp):
TATTTTTAAATCTATTTT
Found at i:6986087 original size:16 final size:16
Alignment explanation
Indices: 6986068--6986108 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
6986058 AAATAGATAA
*
6986068 TTTTTCAAATTCAAGT
1 TTTTTCAAATTCAAAT
*
6986084 TTTTT-AAATTTAAAT
1 TTTTTCAAATTCAAAT
6986099 TTTTTCAAAT
1 TTTTTCAAAT
6986109 GAATACAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (16 bp):
TTTTTCAAATTCAAAT
Found at i:6988867 original size:11 final size:11
Alignment explanation
Indices: 6988851--6988881 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
6988841 AATCCCATAA
6988851 GAGATTTGTTT
1 GAGATTTGTTT
6988862 GAGATTTGTTT
1 GAGATTTGTTT
6988873 GAGATTTGT
1 GAGATTTGT
6988882 CAAATATTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:6988993 original size:52 final size:51
Alignment explanation
Indices: 6988906--6989062 Score: 188
Period size: 52 Copynumber: 3.0 Consensus size: 51
6988896 TGGACAAGAA
* * *
6988906 GACTTGCAAAAGAAGAATTCTAAGAGAAAGAAGATTCTTAATAGGTAAGTTT
1 GACTTACAAGAGAAGAATTATAAGAGAAAG-AGATTCTTAATAGGTAAGTTT
* *
6988958 GACTTACAAGAGAAGAATTTTAAAAAGAAAGAGATTCTTAATAGGTAAGTTT
1 GACTTACAAGAGAAGAATTAT-AAGAGAAAGAGATTCTTAATAGGTAAGTTT
* * * * * *
6989010 AACTTACAGGAAAAGAATTATAAGAGAAGAGGGATTCTTAATGGGCAAGTTT
1 GACTTACAAGAGAAGAATTATAAGAGAA-AGAGATTCTTAATAGGTAAGTTT
6989062 G
1 G
6989063 TATGGTTATA
Statistics
Matches: 90, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
51 6 0.07
52 76 0.84
53 8 0.09
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.27
Consensus pattern (51 bp):
GACTTACAAGAGAAGAATTATAAGAGAAAGAGATTCTTAATAGGTAAGTTT
Found at i:6993051 original size:21 final size:21
Alignment explanation
Indices: 6993002--6993045 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
6992992 TTACTTTCAA
6993002 TAATGAAAAGGAAGATGGAAC
1 TAATGAAAAGGAAGATGGAAC
6993023 TAATGAAAAGGAAGATGGAAC
1 TAATGAAAAGGAAGATGGAAC
6993044 TA
1 TA
6993046 TGGAAATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.52, C:0.05, G:0.27, T:0.16
Consensus pattern (21 bp):
TAATGAAAAGGAAGATGGAAC
Found at i:6997979 original size:18 final size:18
Alignment explanation
Indices: 6997956--6997990 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6997946 ACATATTGTT
6997956 TCATTTTGCTTT-TTTTTA
1 TCATTTT-CTTTATTTTTA
6997974 TCATTTTCTTTATTTTT
1 TCATTTTCTTTATTTTT
6997991 TAAAATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.74
Consensus pattern (18 bp):
TCATTTTCTTTATTTTTA
Found at i:6997989 original size:17 final size:18
Alignment explanation
Indices: 6997956--6997989 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
6997946 ACATATTGTT
*
6997956 TCATTTTGCTTTTTTTTA
1 TCATTTTGCTTTATTTTA
6997974 TCATTTT-CTTTATTTT
1 TCATTTTGCTTTATTTT
6997990 TTAAAATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.12, C:0.12, G:0.03, T:0.74
Consensus pattern (18 bp):
TCATTTTGCTTTATTTTA
Found at i:7000422 original size:28 final size:29
Alignment explanation
Indices: 7000366--7000423 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
7000356 ATGTATTGTA
* *
7000366 TTAATAAAAAATTTATTTAATATCTTAAT
1 TTAATAAAAAATATATTTAATATCATAAT
7000395 TTAATAAAAAAGTATATTT-ATAT-ATAAT
1 TTAATAAAAAA-TATATTTAATATCATAAT
7000423 T
1 T
7000424 AACTTATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 5 0.19
29 15 0.58
30 6 0.23
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (29 bp):
TTAATAAAAAATATATTTAATATCATAAT
Found at i:7004884 original size:45 final size:46
Alignment explanation
Indices: 7004819--7004911 Score: 116
Period size: 45 Copynumber: 2.0 Consensus size: 46
7004809 TTTTAGCTGC
* * * *
7004819 TTTTCCATTCCATGTGAGACATGTTAAAGATAAGACATCGTAGAAA
1 TTTTCCATTCCATGTAAGACACGATAAAAATAAGACATCGTAGAAA
* * *
7004865 TTTT-CATTCCATGTAAGACACGATAAAAATTAGACATTGTAGGAA
1 TTTTCCATTCCATGTAAGACACGATAAAAATAAGACATCGTAGAAA
7004910 TT
1 TT
7004912 CCCAACAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
45 36 0.90
46 4 0.10
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (46 bp):
TTTTCCATTCCATGTAAGACACGATAAAAATAAGACATCGTAGAAA
Found at i:7005289 original size:21 final size:22
Alignment explanation
Indices: 7005233--7005291 Score: 77
Period size: 21 Copynumber: 2.7 Consensus size: 22
7005223 ATATATAAAA
* *
7005233 AATATAAATAT-ATTTATTTTT
1 AATATAAATATAATTTAATTAT
7005254 AATATAAATTATAATTTAATTAT
1 AATATAAA-TATAATTTAATTAT
7005277 -ATATAAATATAATTT
1 AATATAAATATAATTT
7005292 TTATTAAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.47
22 10 0.29
23 8 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATATAAATATAATTTAATTAT
Found at i:7005297 original size:22 final size:21
Alignment explanation
Indices: 7005233--7005298 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
7005223 ATATATAAAA
*
7005233 AATATAAATAT-ATTTATTTTT
1 AATATAAATATAATTT-TTATT
*
7005254 AATATAAATTATAA-TTTAATT
1 AATATAAA-TATAATTTTTATT
7005275 ATATATAAATATAATTTTTATT
1 A-ATATAAATATAATTTTTATT
7005297 AA
1 AA
7005299 ATTAAGATAT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
21 18 0.47
22 19 0.50
23 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
AATATAAATATAATTTTTATT
Found at i:7005720 original size:50 final size:51
Alignment explanation
Indices: 7005641--7005740 Score: 139
Period size: 50 Copynumber: 1.9 Consensus size: 51
7005631 ATGTGAATTT
* * *
7005641 ATTAAATTAAATTACTATATAATATTTTTTAATGTA-ATACATATATAAAA
1 ATTAAATTAAATAACTATAAAATATTTTTTAATATATATACATATATAAAA
*
7005691 ATTAAATTAAATAACTAATAAAATATTTTTTATATATATATATATATATA
1 ATTAAATTAAATAACT-ATAAAATATTTTTTA-ATATATATACATATATA
7005741 CATATACATC
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
50 15 0.35
51 14 0.33
52 4 0.09
53 10 0.23
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (51 bp):
ATTAAATTAAATAACTATAAAATATTTTTTAATATATATACATATATAAAA
Found at i:7006155 original size:12 final size:11
Alignment explanation
Indices: 7006116--7006154 Score: 60
Period size: 12 Copynumber: 3.4 Consensus size: 11
7006106 TAAAAACTCT
7006116 AAAAAAAAAAG
1 AAAAAAAAAAG
7006127 CAAAAAAAAAAG
1 -AAAAAAAAAAG
7006139 AAAATAAAAAAG
1 AAAA-AAAAAAG
7006151 AAAA
1 AAAA
7006155 TTGTGTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 4 0.15
12 22 0.85
ACGTcount: A:0.87, C:0.03, G:0.08, T:0.03
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:7006232 original size:30 final size:31
Alignment explanation
Indices: 7006179--7006243 Score: 89
Period size: 30 Copynumber: 2.1 Consensus size: 31
7006169 AATAAAGTGG
*
7006179 AAAAGCAAAAAAGAAAAAGAAAAAACAATTT
1 AAAAGCAAAAAAGAAAAAGAAAAAACAATTA
*
7006210 AAAAGTCAAAAAA-AAAAA-AAAAACCAATTA
1 AAAAG-CAAAAAAGAAAAAGAAAAAACAATTA
7006240 AAAA
1 AAAA
7006244 ATAAAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
30 14 0.45
31 10 0.32
32 7 0.23
ACGTcount: A:0.77, C:0.08, G:0.06, T:0.09
Consensus pattern (31 bp):
AAAAGCAAAAAAGAAAAAGAAAAAACAATTA
Found at i:7006249 original size:29 final size:30
Alignment explanation
Indices: 7006179--7006259 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 30
7006169 AATAAAGTGG
* *
7006179 AAAAGCAAAAAAGAAAAAGAAAAAACAATTTA
1 AAAATCAAAAAA-AAAAA-AAAAAACAATTAA
* *
7006211 AAAGTCAAAAAAAAAAAAAAAACCAATTAA
1 AAAATCAAAAAAAAAAAAAAAAACAATTAA
* *
7006241 AAAAT-AAAAATAAATAAAA
1 AAAATCAAAAAAAAAAAAAA
7006260 TAGAGAAGCG
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 12 0.29
30 15 0.36
31 5 0.12
32 10 0.24
ACGTcount: A:0.78, C:0.06, G:0.05, T:0.11
Consensus pattern (30 bp):
AAAATCAAAAAAAAAAAAAAAAACAATTAA
Found at i:7011145 original size:16 final size:16
Alignment explanation
Indices: 7011124--7011154 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7011114 TGTAAATGTA
7011124 TTTTGTATGATTATTT
1 TTTTGTATGATTATTT
*
7011140 TTTTGTGTGATTATT
1 TTTTGTATGATTATT
7011155 GTTTGTACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (16 bp):
TTTTGTATGATTATTT
Found at i:7020995 original size:31 final size:31
Alignment explanation
Indices: 7020935--7020995 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
7020925 ATGTGTAGGA
* *
7020935 GCTCAACCTGAATATAAGGCTATAGGATATG
1 GCTCAACCTGAATATAAGGCTACAAGATATG
* *
7020966 GCTCAACCTGAATATAGGGGTACAAGATAT
1 GCTCAACCTGAATATAAGGCTACAAGATAT
7020996 TTGGTATTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (31 bp):
GCTCAACCTGAATATAAGGCTACAAGATATG
Found at i:7023391 original size:29 final size:29
Alignment explanation
Indices: 7023358--7023414 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
7023348 TTTATATAAA
*
7023358 AATTAAAAG-TTAAAGACTTATTTGGATAC
1 AATT-AAAGTTTAAAAACTTATTTGGATAC
7023387 AATTAAAGTTTAAAAACTTATTTGGATA
1 AATTAAAGTTTAAAAACTTATTTGGATA
7023415 AAAGAATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 4 0.15
29 22 0.85
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.37
Consensus pattern (29 bp):
AATTAAAGTTTAAAAACTTATTTGGATAC
Found at i:7024566 original size:67 final size:67
Alignment explanation
Indices: 7024458--7024588 Score: 208
Period size: 67 Copynumber: 2.0 Consensus size: 67
7024448 AAAATCAATA
* *
7024458 GATGTAGAGATGATAAAACAACTTATATCCGATGGATTTTGATTCGAAACGATCTAATCGATGTA
1 GATGTAGAGATGATAAAACAACCTATATCCGATGGATTTTGATTCGAAACAATCTAATCGATGTA
7024523 TT
66 TT
* * **
7024525 GATGTAGAGATGATAAAACACCCTATATCCGATGGATTTTGATTCGCAGTAATCTAATCGATGT
1 GATGTAGAGATGATAAAACAACCTATATCCGATGGATTTTGATTCGAAACAATCTAATCGATGT
7024589 GATTTAAAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 58 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (67 bp):
GATGTAGAGATGATAAAACAACCTATATCCGATGGATTTTGATTCGAAACAATCTAATCGATGTA
TT
Found at i:7026275 original size:14 final size:15
Alignment explanation
Indices: 7026251--7026283 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
7026241 TAATTAATCA
7026251 ATTTTTATTGTGATT
1 ATTTTTATTGTGATT
*
7026266 ATTTTT-TTGTTATT
1 ATTTTTATTGTGATT
7026280 ATTT
1 ATTT
7026284 ACTATTTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.18, C:0.00, G:0.09, T:0.73
Consensus pattern (15 bp):
ATTTTTATTGTGATT
Found at i:7026660 original size:17 final size:18
Alignment explanation
Indices: 7026621--7026666 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
7026611 TTTTACCAAA
*
7026621 TTTACATTTTATTTTAAC
1 TTTATATTTTATTTTAAC
*
7026639 TTTAT-TTTTATTTTTTAC
1 TTTATATTTTA-TTTTAAC
7026657 -TTATATTTTA
1 TTTATATTTTA
7026667 AAAAATGAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTATATTTTATTTTAAC
Found at i:7026684 original size:3 final size:3
Alignment explanation
Indices: 7026676--7026708 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
7026666 AAAAAATGAG
7026676 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7026709 AATCATCATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7037941 original size:3 final size:3
Alignment explanation
Indices: 7037933--7037973 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7037923 TTATTTAAAG
7037933 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7037974 ATCATCATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7042219 original size:75 final size:75
Alignment explanation
Indices: 7042076--7042221 Score: 175
Period size: 75 Copynumber: 1.9 Consensus size: 75
7042066 AAGATTCTTG
* * ***
7042076 AGCTTTGAAAGCAAATCTAACTTGATGACGCCACAAAAATTATTTGATGAAAGATCGAGTTTTTC
1 AGCTTTGAAAGCAAAGCTAACTTGATGACGCCACAAAAATTATTTGATGAAAGATCAAGTTGGGC
7042141 AAGATTCCCA
66 AAGATTCCCA
* * * *** * *
7042151 AGCTTTGAAAGCATAGCTGACTTGATTACGCCAGTCAAGTTGTTTGATGAAAGATCAAGTTGGGC
1 AGCTTTGAAAGCAAAGCTAACTTGATGACGCCACAAAAATTATTTGATGAAAGATCAAGTTGGGC
7042216 AAGATT
66 AAGATT
7042222 TGCAAGATCA
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
75 58 1.00
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (75 bp):
AGCTTTGAAAGCAAAGCTAACTTGATGACGCCACAAAAATTATTTGATGAAAGATCAAGTTGGGC
AAGATTCCCA
Found at i:7048439 original size:15 final size:16
Alignment explanation
Indices: 7048411--7048440 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7048401 TAAAAGAATA
7048411 TATTTTACTATTTATT
1 TATTTTACTATTTATT
7048427 TATTTTA-TATTTAT
1 TATTTTACTATTTAT
7048441 ATATATATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (16 bp):
TATTTTACTATTTATT
Found at i:7053505 original size:21 final size:22
Alignment explanation
Indices: 7053449--7053507 Score: 77
Period size: 21 Copynumber: 2.7 Consensus size: 22
7053439 TATATAGAAA
* *
7053449 AATATAAATAT-ATTTATTTTT
1 AATATAAATATAATTTAATTAT
7053470 AATATAAATTATAATTTAATTAT
1 AATATAAA-TATAATTTAATTAT
7053493 -ATATAAATATAATTT
1 AATATAAATATAATTT
7053508 TTTATTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.47
22 10 0.29
23 8 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATATAAATATAATTTAATTAT
Found at i:7053518 original size:28 final size:29
Alignment explanation
Indices: 7053487--7053562 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 29
7053477 ATTATAATTT
*
7053487 AATTATATATAAATATAAT-TTTTTATTA
1 AATTATATATAAATATAATATCTTTATTA
* *
7053515 AATTAAGATATTAA-ATAATATCTTTATTA
1 AATT-ATATATAAATATAATATCTTTATTA
* *
7053544 ATATAATAAATAAATATAA
1 A-ATTATATATAAATATAA
7053563 ATTAAATAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
28 9 0.24
29 22 0.59
30 6 0.16
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (29 bp):
AATTATATATAAATATAATATCTTTATTA
Found at i:7053572 original size:19 final size:18
Alignment explanation
Indices: 7053548--7053583 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
7053538 TTATTAATAT
7053548 AATAAATAAATATAAATTA
1 AATAAATAAATA-AAATTA
7053567 AATAAATAAATAAAATT
1 AATAAATAAATAAAATT
7053584 CTTTTATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATAAATAAATAAAATTA
Found at i:7054197 original size:16 final size:16
Alignment explanation
Indices: 7054178--7054216 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
7054168 GAAAGCCAAC
7054178 AAAATAAAAA-AAAATT
1 AAAA-AAAAAGAAAATT
*
7054194 AAAAAAAAAGACAATT
1 AAAAAAAAAGAAAATT
7054210 AAAAAAA
1 AAAAAAA
7054217 GAGAGAGGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (16 bp):
AAAAAAAAAGAAAATT
Found at i:7054835 original size:15 final size:15
Alignment explanation
Indices: 7054785--7054828 Score: 79
Period size: 15 Copynumber: 2.9 Consensus size: 15
7054775 ATGTAAACAA
7054785 TTTTTTGAATTCAAG
1 TTTTTTGAATTCAAG
7054800 TTTTTTGAATTCAAG
1 TTTTTTGAATTCAAG
*
7054815 TTTTTTAAATTCAA
1 TTTTTTGAATTCAA
7054829 AATTTTTCGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.30, C:0.07, G:0.09, T:0.55
Consensus pattern (15 bp):
TTTTTTGAATTCAAG
Found at i:7057415 original size:6 final size:6
Alignment explanation
Indices: 7057393--7057440 Score: 53
Period size: 6 Copynumber: 8.0 Consensus size: 6
7057383 TTCTTTCTCA
* * *
7057393 TTTAAT TTT-AT TCTAAT TTTAAT TTTAAT TTTGAT TATTACT TTTAAT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT T-TTAAT TTTAAT
7057441 GAATTAAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
5 4 0.12
6 26 0.76
7 4 0.12
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (6 bp):
TTTAAT
Found at i:7061687 original size:31 final size:31
Alignment explanation
Indices: 7061649--7061710 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
7061639 TTCGTGTAGG
*
7061649 GGCTCAACCTGAATATAAGGCTACAGGATAT
1 GGCTCAACCTGAATATAAAGCTACAGGATAT
*
7061680 GGCTCAACTTGAATATAAAGCTACAGGATAT
1 GGCTCAACCTGAATATAAAGCTACAGGATAT
7061711 TTAATATTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (31 bp):
GGCTCAACCTGAATATAAAGCTACAGGATAT
Found at i:7061857 original size:31 final size:31
Alignment explanation
Indices: 7061799--7061859 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
7061789 ATGTGTAGGG
* * *
7061799 GCTCAATATGAATATAAGGTTATAGGATATA
1 GCTCAATATGAATATAAAGCTACAGGATATA
7061830 GCTCAACT-TGAATATAAAGCTACAGGATAT
1 GCTCAA-TATGAATATAAAGCTACAGGATAT
7061860 TTAATATTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (31 bp):
GCTCAATATGAATATAAAGCTACAGGATATA
Found at i:7061873 original size:149 final size:148
Alignment explanation
Indices: 7061603--7061897 Score: 464
Period size: 149 Copynumber: 2.0 Consensus size: 148
7061593 GCCCATTACG
* *
7061603 TGTAGGCTATTTGATATTCTCTTTAACAGGTCCTCATTCGTGTAGGGGCTCAACCTGAATATAAG
1 TGTAGGCTATTTGATATTCTCTTTAACAGGTCCCCATTCGTGTAGGGGCTCAACATGAATATAAG
* *
7061668 GCTACAGGATATGGCTCAACTTGAATATAAAGCTACAGGATATTTAATATTCTTTTTAACAGGTT
66 GCTACAGGATATAGCTCAACTTGAATATAAAGCTACAGGATATTTAATATTATTTTTAACAGGTT
* *
7061733 CTCATCATGTGTAGGCCA
131 CCCATCATGTATAGGCCA
* * * *
7061751 TGTAGGCTATTTGATATTTTCTTTAATAGGTCCCCATTATGTGTAGGGGCTCAATATGAATATAA
1 TGTAGGCTATTTGATATTCTCTTTAACAGGTCCCCATT-CGTGTAGGGGCTCAACATGAATATAA
* * *
7061816 GGTTATAGGATATAGCTCAACTTGAATATAAAGCTACAGGATATTTAATATTATTTTTAATAGGT
65 GGCTACAGGATATAGCTCAACTTGAATATAAAGCTACAGGATATTTAATATTATTTTTAACAGGT
7061881 TCCCATCATGTATAGGC
130 TCCCATCATGTATAGGC
7061898 AAAAATGAAA
Statistics
Matches: 133, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
148 35 0.26
149 98 0.74
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (148 bp):
TGTAGGCTATTTGATATTCTCTTTAACAGGTCCCCATTCGTGTAGGGGCTCAACATGAATATAAG
GCTACAGGATATAGCTCAACTTGAATATAAAGCTACAGGATATTTAATATTATTTTTAACAGGTT
CCCATCATGTATAGGCCA
Found at i:7064239 original size:30 final size:29
Alignment explanation
Indices: 7064205--7064277 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
7064195 TTTTAAGAGT
*
7064205 TTATTTATATAAATATTAAAAG-TTAAAAAC
1 TTATTTAGATAAA-ATT-AAAGTTTAAAAAC
* *
7064235 TTATTTGGATACAATTAAAGTTTAAAAAC
1 TTATTTAGATAAAATTAAAGTTTAAAAAC
*
7064264 TTATTTGGATAAAA
1 TTATTTAGATAAAA
7064278 GAATAAAGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 4 0.11
29 24 0.63
30 10 0.26
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (29 bp):
TTATTTAGATAAAATTAAAGTTTAAAAAC
Found at i:7064253 original size:29 final size:29
Alignment explanation
Indices: 7064219--7064327 Score: 96
Period size: 29 Copynumber: 3.7 Consensus size: 29
7064209 TTATATAAAT
7064219 ATTAAAAGTTAAAAACTTATTTGGATACA
1 ATTAAAAGTTAAAAACTTATTTGGATACA
*
7064248 ATT-AAAGTTTAAAAACTTATTTGGATAAA
1 ATTAAAAG-TTAAAAACTTATTTGGATACA
** * * *
7064277 AGAATAAAGGTAAAAATTTTATTTGGATGCA
1 ATTA-AAAGTTAAAAA-CTTATTTGGATACA
* *
7064308 A-TAAAAATATAAAAATTTAT
1 ATTAAAAGT-TAAAAACTTAT
7064328 CTAAATAAAG
Statistics
Matches: 65, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
28 4 0.06
29 32 0.49
30 13 0.20
31 16 0.25
ACGTcount: A:0.50, C:0.04, G:0.11, T:0.35
Consensus pattern (29 bp):
ATTAAAAGTTAAAAACTTATTTGGATACA
Found at i:7068542 original size:26 final size:22
Alignment explanation
Indices: 7068494--7068549 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
7068484 ATATATTTTT
7068494 TATTATTATTTATCTATTCATA
1 TATTATTATTTATCTATTCATA
*
7068516 TATTATTATTTATCTATTAATA
1 TATTATTATTTATCTATTCATA
*
7068538 TA-TATTTTTTAT
1 TATTATTATTTAT
7068550 TTTATCTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 9 0.28
22 23 0.72
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.62
Consensus pattern (22 bp):
TATTATTATTTATCTATTCATA
Found at i:7069379 original size:5 final size:5
Alignment explanation
Indices: 7069369--7069415 Score: 69
Period size: 5 Copynumber: 9.4 Consensus size: 5
7069359 TTAGTATTTC
*
7069369 TTATT TTATT TTATT TTATT TT-TT TTAGTT TTATC TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TTA-TT TTATT TTATT TTATT TT
7069416 TTGATTTTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
4 4 0.11
5 29 0.76
6 5 0.13
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:7069386 original size:25 final size:25
Alignment explanation
Indices: 7069358--7069412 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
7069348 ATTAGAATTA
*
7069358 TTTAGTATTTCTTA-TTTTATTTTAT
1 TTTA-TATTTCTTAGTTTTATCTTAT
* *
7069383 TTTATTTTTTTTAGTTTTATCTTAT
1 TTTATATTTCTTAGTTTTATCTTAT
7069408 TTTAT
1 TTTAT
7069413 TTTTTGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 7 0.27
25 19 0.73
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (25 bp):
TTTATATTTCTTAGTTTTATCTTAT
Found at i:7069654 original size:58 final size:58
Alignment explanation
Indices: 7069444--7069782 Score: 516
Period size: 58 Copynumber: 5.8 Consensus size: 58
7069434 AATTCCAAAA
* * *
7069444 AAAAAATATTTTTGAGGAGAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTCTTCAA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTC-T
*
7069503 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
* *
7069561 AAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
1 ---AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
*
7069622 AAAAAATATTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
* * *
7069680 AAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTTCTTGGAAATAAGTTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
* * *
7069738 AAAAAAATATTTTTGAGGAAAGGTTGAAAGTATTAATTTTTCTTG
1 -AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
7069783 TACAAAAGCA
Statistics
Matches: 259, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
58 109 0.42
59 95 0.37
61 55 0.21
ACGTcount: A:0.42, C:0.06, G:0.14, T:0.38
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
Found at i:7081018 original size:14 final size:14
Alignment explanation
Indices: 7080999--7081032 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
7080989 TTTAGGACCA
7080999 ACTTTGCTTATGAC
1 ACTTTGCTTATGAC
*
7081013 ACTTTGCTTGTGAC
1 ACTTTGCTTATGAC
7081027 ACTTTG
1 ACTTTG
7081033 ATTCCTCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.21, G:0.18, T:0.44
Consensus pattern (14 bp):
ACTTTGCTTATGAC
Found at i:7082308 original size:117 final size:117
Alignment explanation
Indices: 7082102--7082317 Score: 369
Period size: 117 Copynumber: 1.8 Consensus size: 117
7082092 CAACTCAAAG
* *
7082102 ATGTCATTTTGTTAAAGTCCTAGTTTGATTTCTTTAGGCAAAATTTCCTATTCAGATTTTTTCTG
1 ATGTCATTTTGTTAAAGTCCTAGTTTGATTTCTTTAGGCAAAATTTCCTATTCAAATTTTTTCAG
* **
7082167 ACAGTTTCTCATTTTGCTTTGGGCTTCTAATGATGATATCTACTGACTTAAA
66 ACAGTTTCCCATTCAGCTTTGGGCTTCTAATGATGATATCTACTGACTTAAA
*
7082219 ATGTCATTTTGTTAAAGTCCTAGTTTGATTTCTTTAGGCCAAATTTCCTATTCAAATTTTTTCAG
1 ATGTCATTTTGTTAAAGTCCTAGTTTGATTTCTTTAGGCAAAATTTCCTATTCAAATTTTTTCAG
*
7082284 ACAGTTTCCCATTCAGCTTTGGGCTTTTAATGAT
66 ACAGTTTCCCATTCAGCTTTGGGCTTCTAATGAT
7082318 AAAGTTATCA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
117 92 1.00
ACGTcount: A:0.24, C:0.16, G:0.14, T:0.46
Consensus pattern (117 bp):
ATGTCATTTTGTTAAAGTCCTAGTTTGATTTCTTTAGGCAAAATTTCCTATTCAAATTTTTTCAG
ACAGTTTCCCATTCAGCTTTGGGCTTCTAATGATGATATCTACTGACTTAAA
Done.