Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 37 of 100
Found at i:7084162 original size:3 final size:3
Alignment explanation
Indices: 7084134--7084300 Score: 64
Period size: 3 Copynumber: 61.0 Consensus size: 3
7084124 AAAAGAAGGA
*
7084134 AAT AAA AAT AA- AAT AA- AAT AAAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* * * * **
7084178 AA- AA- AAA AAT -AT ACT -AC AAT -AT AAT -AT ACT -AT GTT AAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
7084218 ACT -AT ACT -TT AAT -AT ATAT AAT AAT AAT -AT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
7084259 AAT -CT AAT AAT -AT ACT AAT AA- AAT AAT ACT AAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7084301 CCTATTGACC
Statistics
Matches: 120, Mismatches: 25, Indels: 38
0.66 0.14 0.21
Matches are distributed among these distances:
2 30 0.25
3 84 0.70
4 6 0.05
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7084203 original size:5 final size:5
Alignment explanation
Indices: 7084141--7084259 Score: 52
Period size: 5 Copynumber: 24.2 Consensus size: 5
7084131 GGAAATAAAA
* * * * *
7084141 ATAAA ATAAA ATAA- ATAAT AATAAT AATAAT AATAAT AAAAA AAAAT
1 ATAAT ATAAT ATAAT ATAAT -ATAAT -ATAAT -ATAAT ATAAT ATAAT
* * * * * * *
7084188 ATACT ACAAT ATAAT ATACT AT-GT -TAAT ATACT ATACT TTAAT AT-AT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
7084235 ATAAT AATAAT AT-A- ATAAT ATAAT A
1 ATAAT -ATAAT ATAAT ATAAT ATAAT A
7084260 ATCTAATAAT
Statistics
Matches: 91, Mismatches: 15, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
3 3 0.03
4 12 0.13
5 54 0.59
6 22 0.24
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (5 bp):
ATAAT
Found at i:7084251 original size:8 final size:8
Alignment explanation
Indices: 7084238--7084293 Score: 76
Period size: 8 Copynumber: 6.9 Consensus size: 8
7084228 AATATATATA
7084238 ATAATAAT
1 ATAATAAT
7084246 ATAATAAT
1 ATAATAAT
7084254 ATAATAAT
1 ATAATAAT
*
7084262 CTAATAAT
1 ATAATAAT
*
7084270 ATACTAAT
1 ATAATAAT
*
7084278 AAAATAAT
1 ATAATAAT
7084286 ACTAATAA
1 A-TAATAA
7084294 AAATAATCCT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
8 36 0.88
9 5 0.12
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (8 bp):
ATAATAAT
Found at i:7085873 original size:16 final size:16
Alignment explanation
Indices: 7085847--7085884 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
7085837 TATTAATTAT
*
7085847 TATTATATTATTTTTA
1 TATTGTATTATTTTTA
*
7085863 TTTTGTATTATTTTTA
1 TATTGTATTATTTTTA
7085879 TATTGT
1 TATTGT
7085885 TTAAATAAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (16 bp):
TATTGTATTATTTTTA
Found at i:7086411 original size:17 final size:18
Alignment explanation
Indices: 7086384--7086417 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7086374 ACTTAAAATT
*
7086384 AAAATAGAAAATAAAAAG
1 AAAATAGAAAAGAAAAAG
7086402 AAAA-AGAAAAGAAAAA
1 AAAATAGAAAAGAAAAA
7086418 TCTAACCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (18 bp):
AAAATAGAAAAGAAAAAG
Found at i:7087284 original size:12 final size:13
Alignment explanation
Indices: 7087257--7087285 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7087247 TGAAACCAAA
7087257 TTTTTTTTTTACT
1 TTTTTTTTTTACT
7087270 TTTTTTTTTTA-T
1 TTTTTTTTTTACT
7087282 TTTT
1 TTTT
7087286 ATATTTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.07, C:0.03, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTTTTTACT
Found at i:7095083 original size:12 final size:12
Alignment explanation
Indices: 7095066--7095090 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7095056 TTATTTAAAG
7095066 AAAAATCAAAAT
1 AAAAATCAAAAT
7095078 AAAAATCAAAAT
1 AAAAATCAAAAT
7095090 A
1 A
7095091 GAAAGGAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAATCAAAAT
Found at i:7095397 original size:57 final size:57
Alignment explanation
Indices: 7095128--7095397 Score: 387
Period size: 59 Copynumber: 4.7 Consensus size: 57
7095118 TGTGTAGGGC
* *
7095128 AAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTAGAAATTTATTTTTAAGGA
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGA
* * *
7095185 AAATTGATACTTTCAACTTTTCCTCAAAAATCCCTTTTTTGAAAATTTATTTTTAAGGA
1 AAATTGATACTTTCAACTTTTCCCCAAAAAT--ATTTTTTGGAAATTTATTTTTAAGGA
* * **
7095244 AAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAACTTTGATTTCCAAGGA
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAA-TTT-ATTTTTAAGGA
* * **
7095303 AAATTGATACTTCCAACTTTTCCTCAAAAATCCTTTTTGGAAATTTATTTTTAAGGA
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGA
7095360 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
7095398 TTGATTTTTA
Statistics
Matches: 186, Mismatches: 23, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
57 82 0.44
58 6 0.03
59 98 0.53
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.43
Consensus pattern (57 bp):
AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGA
Found at i:7095398 original size:116 final size:116
Alignment explanation
Indices: 7095128--7095398 Score: 447
Period size: 116 Copynumber: 2.3 Consensus size: 116
7095118 TGTGTAGGGC
* * **
7095128 AAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTAGAAATTTATTTTTAAGGAAAATTGAT
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTATTTCCAAGGAAAATTGAT
*
7095193 ACTTTCAACTTTTCCTCAAAAATCCCTTTTTTGAAAATTTATTTTTAAGGA
66 ACTTCCAACTTTTCCTCAAAAATCCCTTTTTTGAAAATTTATTTTTAAGGA
*
7095244 AAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAACTTTGATTTCCAAGGAAAATTG
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAA-TTT-ATTTCCAAGGAAAATTG
*
7095309 ATACTTCCAACTTTTCCTCAAAAAT-CC-TTTTTGGAAATTTATTTTTAAGGA
64 ATACTTCCAACTTTTCCTCAAAAATCCCTTTTTTGAAAATTTATTTTTAAGGA
7095360 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
7095399 TGATTTTTAT
Statistics
Matches: 145, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
116 101 0.70
117 5 0.03
118 39 0.27
ACGTcount: A:0.34, C:0.15, G:0.07, T:0.44
Consensus pattern (116 bp):
AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAATTTATTTCCAAGGAAAATTGAT
ACTTCCAACTTTTCCTCAAAAATCCCTTTTTTGAAAATTTATTTTTAAGGA
Found at i:7095430 original size:10 final size:9
Alignment explanation
Indices: 7095410--7095487 Score: 57
Period size: 10 Copynumber: 7.8 Consensus size: 9
7095400 GATTTTTATT
*
7095410 TAAAGAAAA
1 TAAAAAAAA
7095419 TAAAACAAAA
1 TAAAA-AAAA
7095429 TAAAAGTGAAAA
1 TAAAA---AAAA
*
7095441 TAAATAAAGA
1 TAAA-AAAAA
7095451 TAAAAAAAA
1 TAAAAAAAA
*
7095460 TAAAGAAAAG
1 TAAA-AAAAA
7095470 TAAAACAAGAA
1 TAAAA-AA-AA
7095481 TAAAAAA
1 TAAAAAA
7095488 TAAGATAAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
9 13 0.23
10 28 0.50
11 6 0.11
12 8 0.14
13 1 0.02
ACGTcount: A:0.76, C:0.03, G:0.09, T:0.13
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:7095449 original size:15 final size:15
Alignment explanation
Indices: 7095418--7095504 Score: 54
Period size: 15 Copynumber: 5.5 Consensus size: 15
7095408 TTTAAAGAAA
7095418 ATAAAACAAAATAAA-
1 ATAAAA-AAAATAAAG
*
7095433 AGTGAAAATAAATAAAG
1 A-T-AAAAAAAATAAAG
7095450 ATAAAAAAAATAAAG
1 ATAAAAAAAATAAAG
* *
7095465 A-AAAGTAAAA-CAAG
1 ATAAA-AAAAATAAAG
7095479 AATAAAAAATAAGATAAAG
1 -AT-AAAAA-AA-ATAAAG
7095498 ATAAAAA
1 ATAAAAA
7095505 TATCAAATAA
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
14 6 0.11
15 19 0.34
16 10 0.18
17 15 0.27
18 3 0.05
19 3 0.05
ACGTcount: A:0.75, C:0.02, G:0.09, T:0.14
Consensus pattern (15 bp):
ATAAAAAAAATAAAG
Found at i:7095473 original size:19 final size:20
Alignment explanation
Indices: 7095415--7095487 Score: 62
Period size: 22 Copynumber: 3.5 Consensus size: 20
7095405 TTATTTAAAG
*
7095415 AAAATAAAACAAA-ATAAAAGTG
1 AAAATAAAA-AAAGATAAAA--C
*
7095437 AAAATAAATAAAGATAAAA-
1 AAAATAAAAAAAGATAAAAC
7095456 AAAATAAAGAAAAG-TAAAAC
1 AAAATAAA-AAAAGATAAAAC
7095476 AAGAATAAAAAA
1 AA-AATAAAAAA
7095488 TAAGATAAAG
Statistics
Matches: 45, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
19 13 0.29
20 9 0.20
21 9 0.20
22 14 0.31
ACGTcount: A:0.77, C:0.03, G:0.08, T:0.12
Consensus pattern (20 bp):
AAAATAAAAAAAGATAAAAC
Found at i:7095479 original size:29 final size:29
Alignment explanation
Indices: 7095447--7095503 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 29
7095437 AAAATAAATA
7095447 AAGATAAAAAAAATAAAGA-AAAG-TAAAAC
1 AAGA-AAAAAAAAT-AAGATAAAGATAAAAC
*
7095476 AAGAATAAAAAATAAGATAAAGATAAAA
1 AAGAAAAAAAAATAAGATAAAGATAAAA
7095504 ATATCAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 4 0.16
28 12 0.48
29 9 0.36
ACGTcount: A:0.75, C:0.02, G:0.11, T:0.12
Consensus pattern (29 bp):
AAGAAAAAAAAATAAGATAAAGATAAAAC
Found at i:7095486 original size:30 final size:31
Alignment explanation
Indices: 7095417--7095487 Score: 78
Period size: 30 Copynumber: 2.3 Consensus size: 31
7095407 ATTTAAAGAA
7095417 AATAAAACAAAATAAAAGTGAAAATAAATAAAG
1 AATAAAA-AAAATAAAAG-GAAAATAAATAAAG
7095450 -ATAAAAAAAAT-AAA-GAAAAGTAAA-ACAAG
1 AATAAAAAAAATAAAAGGAAAA-TAAATA-AAG
7095479 AATAAAAAA
1 AATAAAAAA
7095488 TAAGATAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
28 6 0.17
29 7 0.20
30 11 0.31
31 5 0.14
32 6 0.17
ACGTcount: A:0.76, C:0.03, G:0.08, T:0.13
Consensus pattern (31 bp):
AATAAAAAAAATAAAAGGAAAATAAATAAAG
Found at i:7095548 original size:19 final size:19
Alignment explanation
Indices: 7095410--7095550 Score: 63
Period size: 19 Copynumber: 7.0 Consensus size: 19
7095400 GATTTTTATT
*
7095410 TAAAGAAAATAAA-ACAAAA
1 TAAATAAAATAAATA-AAAA
*
7095429 TAAAAGTGAAAATAAATAAAGA
1 T-AAA-T-AAAATAAATAAAAA
* * *
7095451 TAAAAAAAATAAAGAAAAG
1 TAAATAAAATAAATAAAAA
* *
7095470 TAAA-ACAA-GAATAAAAAA
1 TAAATAAAATAAAT-AAAAA
*
7095488 TAAGATAAAGATAAAAATATCAAA
1 TAA-ATAAA-AT--AAATA-AAAA
** *
7095512 TAAATCTAATCTAATAAAAA
1 TAAATAAAAT-AAATAAAAA
7095532 TAAATAAAATAAATAAAAA
1 TAAATAAAATAAATAAAAA
7095551 AATTTCAAAA
Statistics
Matches: 89, Mismatches: 21, Indels: 24
0.66 0.16 0.18
Matches are distributed among these distances:
17 2 0.02
18 10 0.11
19 25 0.28
20 16 0.18
21 8 0.09
22 14 0.16
23 5 0.06
24 9 0.10
ACGTcount: A:0.72, C:0.04, G:0.06, T:0.18
Consensus pattern (19 bp):
TAAATAAAATAAATAAAAA
Found at i:7096498 original size:14 final size:15
Alignment explanation
Indices: 7096481--7096540 Score: 63
Period size: 14 Copynumber: 4.0 Consensus size: 15
7096471 TTACAAAAAA
7096481 ATAATAATAAT-AAT
1 ATAATAATAATAAAT
7096495 ATAATAATAATAAAT
1 ATAATAATAATAAAT
7096510 AT-ATAACTATATAAAT
1 ATAATAA-TA-ATAAAT
*
7096526 AAAATACAT-ATAAAT
1 ATAATA-ATAATAAAT
7096541 CTACTCTAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
14 15 0.38
15 13 0.32
16 7 0.17
17 4 0.10
18 1 0.03
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAATAATAATAAAT
Found at i:7096597 original size:3 final size:3
Alignment explanation
Indices: 7096583--7096633 Score: 61
Period size: 3 Copynumber: 16.7 Consensus size: 3
7096573 ATACATATAT
7096583 TAA TACA TAA TAA TAA TAA TAA TAA TAA TAAA TAA TAA -AA TACA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TA-A TAA
7096630 -AA TA
1 TAA TA
7096634 CAAAAGAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
2 4 0.09
3 30 0.70
4 9 0.21
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (3 bp):
TAA
Found at i:7096604 original size:12 final size:13
Alignment explanation
Indices: 7096573--7096633 Score: 76
Period size: 12 Copynumber: 5.0 Consensus size: 13
7096563 AAATACAGAT
*
7096573 ATACAT-ATATTA
1 ATACATAATAATA
7096585 ATACATAATAATA
1 ATACATAATAATA
7096598 ATA-ATAATAATA
1 ATACATAATAATA
*
7096610 ATAAATAATAA-A
1 ATACATAATAATA
7096622 ATACATAA-AATA
1 ATACATAATAATA
7096634 CAAAAGAAGA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.05
12 27 0.61
13 15 0.34
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (13 bp):
ATACATAATAATA
Found at i:7096867 original size:41 final size:41
Alignment explanation
Indices: 7096821--7097071 Score: 398
Period size: 41 Copynumber: 6.1 Consensus size: 41
7096811 TTGAACCAAA
*
7096821 GCTCCTCTAAACAAAGGCACCACGACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
7096862 GCTCCTCTAAACAGAGGCACCACAACTTTTGAAAAGTAAATTT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAGTAAA-TT
* *
7096905 GCTCCTCTAAACAGAGACACCACGACTTTGAAATGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
7096946 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
7096985 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
* *
7097026 GCTCCTTTAAACAGAGGCACCACGACTTTAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
*
7097067 ACTCC
1 GCTCC
7097072 CTGACAATCA
Statistics
Matches: 195, Mismatches: 11, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
39 36 0.18
40 5 0.03
41 103 0.53
42 25 0.13
43 26 0.13
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATT
Found at i:7097023 original size:80 final size:83
Alignment explanation
Indices: 7096821--7097066 Score: 392
Period size: 80 Copynumber: 3.0 Consensus size: 83
7096811 TTGAACCAAA
* * *
7096821 GCTCCTCTAAACAAAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACA
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
7096886 ACTTTTGAAAAGTAAATTT
66 AC-TTTGAAAAGTAAATTT
*
7096905 GCTCCTCTAAACAGAGACACCACGACTTT-GAAATGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAA-GTAAATTGCTCCTCTAAACAGAGGCACCAC
7096969 GACTTTG-AAA-TAAA-TT
65 GACTTTGAAAAGTAAATTT
*
7096985 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTTTAAACAGAGGCACCACG
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
*
7097050 ACTTTAAAAAGTAAATT
66 ACTTTGAAAAGTAAATT
7097067 ACTCCCTGAC
Statistics
Matches: 150, Mismatches: 7, Indels: 11
0.89 0.04 0.07
Matches are distributed among these distances:
80 65 0.43
81 11 0.07
82 7 0.05
83 8 0.05
84 59 0.39
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (83 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGAAAAGTAAATTT
Found at i:7098319 original size:28 final size:29
Alignment explanation
Indices: 7098287--7098364 Score: 83
Period size: 28 Copynumber: 2.7 Consensus size: 29
7098277 AATTTGAATC
7098287 TCTTTTTTT-TTTCATTTTC-TCAT-TTCTT
1 TCTTTTTTTCTTT--TTTTCATCATCTTCTT
*
7098315 TCTTTTTTTCTTTTTTTCATCATCTTTTT
1 TCTTTTTTTCTTTTTTTCATCATCTTCTT
*
7098344 TC-TTTTTTCTCATTTTTCATC
1 TCTTTTTTTCT-TTTTTTCATC
7098365 CATTGTTGAT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.11
28 21 0.48
29 18 0.41
ACGTcount: A:0.08, C:0.19, G:0.00, T:0.73
Consensus pattern (29 bp):
TCTTTTTTTCTTTTTTTCATCATCTTCTT
Found at i:7098342 original size:19 final size:18
Alignment explanation
Indices: 7098291--7098361 Score: 58
Period size: 19 Copynumber: 3.9 Consensus size: 18
7098281 TGAATCTCTT
*
7098291 TTTTTTTTCA-TTTTCTC
1 TTTTTTCTCATTTTTCTC
*
7098308 ATTTCTTTCT-TTTTTTCT-
1 -TTT-TTTCTCATTTTTCTC
*
7098326 TTTTTTCATCATCTTTTTTC
1 TTTTTTC-TCAT-TTTTCTC
7098346 TTTTTTCTCATTTTTC
1 TTTTTTCTCATTTTTC
7098362 ATCCATTGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
16 4 0.10
17 4 0.10
18 8 0.19
19 19 0.45
20 7 0.17
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTTTCTCATTTTTCTC
Found at i:7098359 original size:29 final size:27
Alignment explanation
Indices: 7098287--7098364 Score: 90
Period size: 29 Copynumber: 2.9 Consensus size: 27
7098277 AATTTGAATC
7098287 TCTTT-TTTTTTTCA-TTTTC-TCATT
1 TCTTTCTTTTTTTCATTTTTCATCATT
*
7098311 TCTTTCTTTTTTTCTTTTTTTCATCATCT
1 TCTTTCTTTTTTTC-ATTTTTCATCAT-T
*
7098340 TTTTTCTTTTTTCTCATTTTTCATC
1 TCTTTCTTTTTT-TCATTTTTCATC
7098365 CATTGTTGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
24 5 0.11
25 8 0.18
27 5 0.11
28 4 0.09
29 21 0.47
30 2 0.04
ACGTcount: A:0.08, C:0.19, G:0.00, T:0.73
Consensus pattern (27 bp):
TCTTTCTTTTTTTCATTTTTCATCATT
Found at i:7105358 original size:57 final size:57
Alignment explanation
Indices: 7105052--7105629 Score: 700
Period size: 57 Copynumber: 9.7 Consensus size: 57
7105042 TTTTTTTTAG
* **
7105052 GGAAAATTGATACTTTCAAC-TTTCCTCAAAAACCCTTTTTT-G-AATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTGGAAATTTATTTCTAA
* *
7105107 GGAAAATTGATACTTTTAAAC-TTTCCCCAAAAATATATTTTTTGAAATTTGATTT-TCAA
1 GGAAAATTGATAC-TTTCAACTTTTCCCCAAAAATAT-TTTTTGGAAATTT-ATTTCT-AA
7105166 GGAAAATTGATCACTTTTCAACTTTTCCCCAAAAATACTTTTTTTTTGGAAATTTATTTTTCTTT
1 GGAAAATTGAT-AC-TTTCAACTTTTCCCCAAAAATA----TTTTTTGGAAATTTA--TTTC---
7105231 TAA
55 TAA
* * *
7105234 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTCTGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTATTTCTAA
7105292 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
*
7105349 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTATTTTTCTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA---TTTTTTGGAAATTTA--TTTC---TAA
* *
7105414 GGAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTGGAAATTTA-TTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTC-TAA
* * * *
7105471 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATTTTTTTTTTTTGAAATTTATTTCTGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA---TATTTTTTGGAAATTTATTTCTAA
7105531 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
*
7105588 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAT-TTTTT
7105630 TTGGAATTTT
Statistics
Matches: 469, Mismatches: 23, Indels: 59
0.85 0.04 0.11
Matches are distributed among these distances:
55 14 0.03
56 22 0.05
57 147 0.31
58 47 0.10
59 20 0.04
60 73 0.16
61 21 0.04
62 19 0.04
63 16 0.03
64 12 0.03
65 41 0.09
66 21 0.04
67 2 0.00
68 13 0.03
69 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
Found at i:7105446 original size:27 final size:27
Alignment explanation
Indices: 7105416--7105505 Score: 67
Period size: 27 Copynumber: 3.2 Consensus size: 27
7105406 TCTTTTAAGG
7105416 AAAATTGATACTTTCAACTTTTTCCTA
1 AAAATTGATACTTTCAACTTTTTCCTA
** * * *
7105443 AAAA-T-ATTTTTTGGAAATTTATTCTTAA
1 AAAATTGATACTTT-CAACTTT-TTCCT-A
*
7105471 GGAAAATTGATACTTTCAACTTTTCCCTA
1 --AAAATTGATACTTTCAACTTTTTCCTA
7105500 AAAATT
1 AAAATT
7105506 TTTTTTTTTT
Statistics
Matches: 45, Mismatches: 11, Indels: 14
0.64 0.16 0.20
Matches are distributed among these distances:
25 5 0.11
26 6 0.13
27 14 0.31
28 1 0.02
29 1 0.02
30 7 0.16
31 6 0.13
32 5 0.11
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (27 bp):
AAAATTGATACTTTCAACTTTTTCCTA
Found at i:7105561 original size:239 final size:238
Alignment explanation
Indices: 7105052--7105635 Score: 859
Period size: 239 Copynumber: 2.4 Consensus size: 238
7105042 TTTTTTTTAG
* **
7105052 GGAAAATTGATACTTTCAAC-TTTCCTCAAAAACCCTTTTTT-G-AATTTATTTCTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTGGAAATTTATTTCTAAGGAAAAT
* * *
7105114 TGATACTTTTAAAC-TTTCCCCAAAAATA-TATTTTTT-GAAATTTGATTTTCAAGGAAAATTGA
65 TGATAC-TTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTGATTTTCAAGGAAAATTGA
7105176 TCACTTTTCAACTTTTCCCCAAAAATACTTTTTTTTTGGAAATTTATTTTTCTTTTAAGGAAAAT
129 TCACTTTTCAACTTTTCCCCAAAAATA---TTTTTTTGGAAATTTA--TTTC-TTTAAGGAAAAT
7105241 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTCTGA
188 TGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTCTGA
7105292 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATT
7105357 GATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTT-ATTTTTCTTTTAAGGAAAAT
66 GATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTGA-TTTTC----AAGGAAAAT
* *
7105421 TGAT-AC-TTTCAACTTTTTCCTAAAAATA-TTTTTTGGAAATTTA-TTC-TTAAGGAAAATTGA
126 TGATCACTTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTCTTTAAGGAAAATTGA
*
7105481 TACTTTCAACTTTTCCCTAAAAATTTTTTTTTTTTGAAATTTATTTCTGA
191 TACTTTCAACTTTTCCCTAAAAA--TATTTTTTTTGAAATTTATTTCTGA
7105531 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATT
*
7105596 GATACTTTCAACTTTTCCCTAAAAATATATTTTTTTGGAA
66 GATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAA
7105636 TTTTTTATTT
Statistics
Matches: 321, Mismatches: 10, Indels: 27
0.90 0.03 0.08
Matches are distributed among these distances:
237 37 0.12
239 131 0.41
240 26 0.08
241 18 0.06
242 54 0.17
243 8 0.02
244 12 0.04
246 20 0.06
247 2 0.01
248 13 0.04
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.45
Consensus pattern (238 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATT
GATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGGAAATTTGATTTTCAAGGAAAATTGATC
ACTTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAATTTATTTCTTTAAGGAAAATTGATACTT
TCAACTTTTCCCTAAAAATATTTTTTTTGAAATTTATTTCTGA
Found at i:7105727 original size:12 final size:11
Alignment explanation
Indices: 7105707--7105774 Score: 57
Period size: 12 Copynumber: 5.9 Consensus size: 11
7105697 AACCTAATCT
*
7105707 AATAAATAAAA
1 AATAAAAAAAA
7105718 AATAAAATAAACA
1 AATAAAA-AAA-A
*
7105731 AATAAACAAAGA
1 AATAAA-AAAAA
7105743 AATAAAAAAAA
1 AATAAAAAAAA
* *
7105754 ATTCAAACAAAA
1 AAT-AAAAAAAA
7105766 AA-AAAAAAA
1 AATAAAAAAA
7105775 CCTGGAGCGG
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
10 6 0.13
11 12 0.26
12 18 0.39
13 9 0.20
14 1 0.02
ACGTcount: A:0.81, C:0.06, G:0.01, T:0.12
Consensus pattern (11 bp):
AATAAAAAAAA
Found at i:7106790 original size:7 final size:7
Alignment explanation
Indices: 7106769--7106811 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
7106759 ATACATGTAT
*
7106769 TAATACA
1 TAATAAA
7106776 TAAT-AA
1 TAATAAA
7106782 TAATAAA
1 TAATAAA
7106789 TAATAAA
1 TAATAAA
7106796 TAATACAA
1 TAATA-AA
7106804 TACATAAA
1 TA-ATAAA
7106812 ATACAAAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
6 5 0.16
7 18 0.56
8 6 0.19
9 3 0.09
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (7 bp):
TAATAAA
Found at i:7106813 original size:17 final size:16
Alignment explanation
Indices: 7106770--7106814 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
7106760 TACATGTATT
7106770 AATACATAATAATAATA
1 AATACATAA-AATAATA
7106787 AATA-AT-AAATAATA
1 AATACATAAAATAATA
7106801 CAATACATAAAATA
1 -AATACATAAAATA
7106815 CAAAAGAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 7 0.28
15 5 0.20
16 4 0.16
17 9 0.36
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (16 bp):
AATACATAAAATAATA
Found at i:7113577 original size:109 final size:109
Alignment explanation
Indices: 7113336--7113578 Score: 405
Period size: 109 Copynumber: 2.2 Consensus size: 109
7113326 TTATGGTTAT
* *
7113336 TTTTATTTCTTTGACTTGCGGTTTAGTCCCAGTCATCATTAATCTTTGATTCATGGTTTAATCTA
1 TTTTATTTCTTTGACTTGCGGTTCAGTCCCAGTCATCATTAATCTTTGATTAATGGTTTAATCTA
7113401 GATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAGTCAC
66 GATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAGTCAC
* * * * *
7113445 TTTTATTTCTTTAACTTGCGGTTCAGTCTCAGTTATCTTTAATCTTTGATTAATGGTTTAATCTC
1 TTTTATTTCTTTGACTTGCGGTTCAGTCCCAGTCATCATTAATCTTTGATTAATGGTTTAATCTA
7113510 GATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAGTCAC
66 GATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAGTCAC
* *
7113554 TTTTATTTCTTTGACTCGTGGTTCA
1 TTTTATTTCTTTGACTTGCGGTTCA
7113579 ATCCTGATTT
Statistics
Matches: 124, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
109 124 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (109 bp):
TTTTATTTCTTTGACTTGCGGTTCAGTCCCAGTCATCATTAATCTTTGATTAATGGTTTAATCTA
GATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAGTCAC
Found at i:7113799 original size:126 final size:125
Alignment explanation
Indices: 7113567--7114040 Score: 610
Period size: 126 Copynumber: 3.7 Consensus size: 125
7113557 TATTTCTTTG
* * *
7113567 ACTCGTGGTTCAATCCTGATTTCTTTAATCTAAAATCGTAGTTTAATCTCGATTGTTGTTATTTT
1 ACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCATAGTTTAATCTCGATTGTTGTTATTTT
* * * *
7113632 TTGACTCGTGATTTAATCCCGATCTCTTTATTATGATTCAATTCAAATTGATGTTATTCTA
66 CTGACTTGTGGTTTAAT-CCGATCTCTTTATTGTGATTCAATTCAAATTGATGTTATTCTA
* *
7113693 ACTTGCAGTTCAAT-CTCGATTTCTTTAATCCAAAATCATAGTTTAATCTCGATTGTTGTTATTT
1 ACTCGCGGTTCAATCCT-GATTTCTTTAATCCAAAATCATAGTTTAATCTCGATTGTTGTTATTT
* *
7113757 TCTGACTTGTGGTTCAATCTCGATCTCTTTATTGTGATTCAATTCAAATTGACGTTATTCTA
65 TCTGACTTGTGGTTTAATC-CGATCTCTTTATTGTGATTCAATTCAAATTGATGTTATTCTA
7113819 ACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCATAGTTTAATCTCGATTGTTGTTATTTT
1 ACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCATAGTTTAATCTCGATTGTTGTTATTTT
* * * *
7113884 CTAACTTGTGGTTTAATCCTGGTCTCTTTATTTTCTAACTTGTGATTCAATCCAAGTTGATGTTA
66 CTGACTTGTGGTTTAATCC-GATCTC------TT-T-A-TTGTGATTCAATTCAAATTGATGTTA
*
7113949 TTCTG
121 TTCTA
* * *
7113954 ACTCGCGGTTTAAT-CTCAATTTCTTTAATCCAAAATCATAATTTAATCTCGATTGTTGTCTTTA
1 ACTCGCGGTTCAATCCT-GATTTCTTTAATCCAAAATCATAGTTTAATCTCGATTGTTG---TTA
7114018 TTTTCTGACTTGTGGTTTAATCC
62 TTTTCTGACTTGTGGTTTAATCC
7114041 TGGTTAATCT
Statistics
Matches: 307, Mismatches: 24, Indels: 22
0.87 0.07 0.06
Matches are distributed among these distances:
125 4 0.01
126 191 0.62
127 2 0.01
132 2 0.01
133 1 0.00
134 3 0.01
135 79 0.26
138 25 0.08
ACGTcount: A:0.24, C:0.17, G:0.13, T:0.46
Consensus pattern (125 bp):
ACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCATAGTTTAATCTCGATTGTTGTTATTTT
CTGACTTGTGGTTTAATCCGATCTCTTTATTGTGATTCAATTCAAATTGATGTTATTCTA
Found at i:7114269 original size:126 final size:126
Alignment explanation
Indices: 7114044--7114468 Score: 499
Period size: 126 Copynumber: 3.3 Consensus size: 126
7114034 TTAATCCTGG
* * * *
7114044 TTAATCTCAATTATTGTTATTTTTTGACTTGAGGTTCAATCCCGGTCTCTTTATTGTGATTCAAT
1 TTAATCTCAATTGTTGTTATTTTTTGACTCGTGGTTCAATCCCGGTCTCTTTATTATGATTCAAT
** **
7114109 TCAAATTGACATTATTCTAACTCGCAATTCAATCCTGATTTCTTTAATCCAAAATCACAGT
66 TCAAATTGATGTTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCACAGT
* *
7114170 TTAATCTCGATTGTTATTATTTTTTGACTCGTGGTTCAATCCCGGTCTCTTTATTATGATTCAAT
1 TTAATCTCAATTGTTGTTATTTTTTGACTCGTGGTTCAATCCCGGTCTCTTTATTATGATTCAAT
* * * *
7114235 TCAAATTGATGTTATTCTAACTCACGGTTCAATCCTAATTTTTTTAATCCAAAATCGCAGT
66 TCAAATTGATGTTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCACAGT
* * * * **
7114296 TTAATCTCGATTGTTGTTATTTTTTGACTTGTGATTTAATCTTGGTCTCTTTATTTCTAACTTGT
1 TTAATCTCAATTGTTGTTATTTTTTGACTCGTGGTTCAATCCCGGTCTCTTTA--T-T-A----T
* * * * *
7114361 GATTCAATCCAAGTTGATGTTATTCTGACTCGCGGTTTAATCTTGATTTCTTTAATCCAAAATCA
58 GATTCAATTCAAATTGATGTTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCA
* *
7114426 TAAT
123 CAGT
*
7114430 TTAATCTCAATTGTTGTCTTTATTTTTTGACTCATGGTT
1 TTAATCTCAATTGTTG---TTATTTTTTGACTCGTGGTT
7114469 TAATTCTGAT
Statistics
Matches: 253, Mismatches: 35, Indels: 11
0.85 0.12 0.04
Matches are distributed among these distances:
126 159 0.63
128 1 0.00
129 1 0.00
130 1 0.00
134 74 0.29
137 17 0.07
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (126 bp):
TTAATCTCAATTGTTGTTATTTTTTGACTCGTGGTTCAATCCCGGTCTCTTTATTATGATTCAAT
TCAAATTGATGTTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCACAGT
Found at i:7114609 original size:174 final size:175
Alignment explanation
Indices: 7114296--7114643 Score: 434
Period size: 174 Copynumber: 2.0 Consensus size: 175
7114286 AAATCGCAGT
* * * *
7114296 TTAATCTCGATTGTTGTTATTTTTTGACTTGTGATTTAATCTTGGTCTCTTTATTTCTAACTTGT
1 TTAATCTCGATTGTTGTTATTTTCTGACTCGTGATTCAATCCTGGTCTC----TTTCTAACTTGT
* * * * **
7114361 GATTCAATCCAAGTTGATGTTATTCTGACTCGCGGTTTAATCTTGATTTCTTTAATCCAAAATCA
62 GATTCAATCCAAATTGACGTTATTCTAACTCGCGGTTCAATCCCGATTTCTTTAATCCAAAATCA
7114426 TAATTTAATCTCAATTGTTGTCTTTATTTTTTGACTCATGGTTTAATTCTGA
127 TAATTTAATCTCAATTGTTG---TTATTTTTTGACTCATGGTTTAATTCTGA
*
7114478 TTAATCTCGATTGTTGTTATTTTCTGACTCGTGGTTCAATCCTGGTCTC-TT-T-A-TTGTGATT
1 TTAATCTCGATTGTTGTTATTTTCTGACTCGTGATTCAATCCTGGTCTCTTTCTAACTTGTGATT
* * * * *
7114539 CAATTCAAATTGACGTTATTCTAACTCGTGGTTCAATCCCGATTTCTTTAATCTAAAATCGTAGT
66 CAATCCAAATTGACGTTATTCTAACTCGCGGTTCAATCCCGATTTCTTTAATCCAAAATCATAAT
* **
7114604 TTAATCTCGATTGTTGTTATTTTTTGACTTGTGGTTTAAT
131 TTAATCTCAATTGTTGTTATTTTTTGACTCATGGTTTAAT
7114644 CCTAGTCTCT
Statistics
Matches: 147, Mismatches: 19, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
171 22 0.15
174 77 0.52
175 1 0.01
176 1 0.01
177 2 0.01
182 44 0.30
ACGTcount: A:0.22, C:0.15, G:0.14, T:0.49
Consensus pattern (175 bp):
TTAATCTCGATTGTTGTTATTTTCTGACTCGTGATTCAATCCTGGTCTCTTTCTAACTTGTGATT
CAATCCAAATTGACGTTATTCTAACTCGCGGTTCAATCCCGATTTCTTTAATCCAAAATCATAAT
TTAATCTCAATTGTTGTTATTTTTTGACTCATGGTTTAATTCTGA
Found at i:7114808 original size:309 final size:308
Alignment explanation
Indices: 7114170--7115084 Score: 1402
Period size: 309 Copynumber: 3.0 Consensus size: 308
7114160 AAATCACAGT
* * *
7114170 TTAATCTCGATTGTTATTATTTTTTGACTCGTGGTTCAATCCCGGTCTCTTTATTATGATTCAAT
1 TTAATCTCGATTGTTGTTATTTTCTGACTCGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAAT
* * *
7114235 TCAAATTGATGTTATTCTAACTCACGGTTCAATCCTAATTTTTTTAATCCAAAATCGCAGTTTAA
66 TCAAATTGACGTTATTCTAACTCACGGTTCAATCCCAATTTCTTTAATCCAAAATCGCAGTTTAA
* *
7114300 TCTCGATTGTTGTTATTTTTTGACTTGTGATTTAATCTTGGTCTCTTTATTTCTAACTTGTGATT
131 TCTCGATTGTTGTTATTTTTTGACTTGTGGTTTAATCCTGGTCTCTTTATTTCTAACTTGTGATT
7114365 CAATCCAAGTTGATGTTATTCTGACTCGCGGTTTAATCTTGATTTCTTTAATCCAAAATCATAAT
196 CAATCCAAGTTGATGTTATTCTGACTCGCGGTTTAATCTTGATTTCTTTAATCCAAAATCATAAT
* * *
7114430 TTAATCTCAATTGTTGTCTTTATTTTTTGACTCATGGTTTAATTCTGA
261 TTAATCTCGATTGTTGTCTTTATTTTTTGACTCATGGTTTAATCCTGG
*
7114478 TTAATCTCGATTGTTGTTATTTTCTGACTCGTGGTTCAATCCTGGTCTCTTTATTGTGATTCAAT
1 TTAATCTCGATTGTTGTTATTTTCTGACTCGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAAT
** * * *
7114543 TCAAATTGACGTTATTCTAACTCGTGGTTCAATCCCGATTTCTTTAATCTAAAATCGTAGTTTAA
66 TCAAATTGACGTTATTCTAACTCACGGTTCAATCCCAATTTCTTTAATCCAAAATCGCAGTTTAA
*
7114608 TCTCGATTGTTGTTATTTTTTGACTTGTGGTTTAATCCTAGTCTCTTTATTTTCTAACTTGTGAT
131 TCTCGATTGTTGTTATTTTTTGACTTGTGGTTTAATCCTGGTCTCTTTA-TTTCTAACTTGTGAT
*** *
7114673 TCAATCCAAGTTGATGTTATTCTGACTTATGGTTTAATTTTGATTTCTTTAATCCAAAATCATAA
195 TCAATCCAAGTTGATGTTATTCTGACTCGCGGTTTAATCTTGATTTCTTTAATCCAAAATCATAA
7114738 TTTAATCTCGATTGTTGTCTTTATTTTTTGACTCATGGTTTAATCCTGG
260 TTTAATCTCGATTGTTGTCTTTATTTTTTGACTCATGGTTTAATCCTGG
*
7114787 TTAATCTCAATTGTTGTTATTTTCTGACTCGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAAT
1 TTAATCTCGATTGTTGTTATTTTCTGACTCGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAAT
*
7114852 TCAAATTGACGTTATTCTAACTCACGGTTCAATCCCAATTTCTTTAATCCAAAATCACAGTTTAA
66 TCAAATTGACGTTATTCTAACTCACGGTTCAATCCCAATTTCTTTAATCCAAAATCGCAGTTTAA
* * * *
7114917 TCTCGATTGTTATTATTTTCTGACTTGTGGTTCAATCCCGGTCTC-----TT-T-A-TTGTGATT
131 TCTCGATTGTTGTTATTTTTTGACTTGTGGTTTAATCCTGGTCTCTTTATTTCTAACTTGTGATT
* * ** * * * *
7114974 CAATTCAAATTGACATTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCATAGT
196 CAATCCAAGTTGATGTTATTCTGACTCGCGGTTTAATCTTGATTTCTTTAATCCAAAATCATAAT
**
7115039 TTAATCTCGATTGTTG---TTATTTTTTGACTTGTGGTTTAATCCTGG
261 TTAATCTCGATTGTTGTCTTTATTTTTTGACTCATGGTTTAATCCTGG
7115084 T
1 T
7115085 CTCTTTATTT
Statistics
Matches: 557, Mismatches: 49, Indels: 13
0.90 0.08 0.02
Matches are distributed among these distances:
297 28 0.05
300 77 0.14
301 1 0.00
302 1 0.00
303 2 0.00
308 164 0.29
309 284 0.51
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (308 bp):
TTAATCTCGATTGTTGTTATTTTCTGACTCGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAAT
TCAAATTGACGTTATTCTAACTCACGGTTCAATCCCAATTTCTTTAATCCAAAATCGCAGTTTAA
TCTCGATTGTTGTTATTTTTTGACTTGTGGTTTAATCCTGGTCTCTTTATTTCTAACTTGTGATT
CAATCCAAGTTGATGTTATTCTGACTCGCGGTTTAATCTTGATTTCTTTAATCCAAAATCATAAT
TTAATCTCGATTGTTGTCTTTATTTTTTGACTCATGGTTTAATCCTGG
Found at i:7114822 original size:45 final size:46
Alignment explanation
Indices: 7114739--7114828 Score: 119
Period size: 45 Copynumber: 1.9 Consensus size: 46
7114729 AAATCATAAT
* * *
7114739 TTAATCTCGATTGTTGTCTTTATTTTTTGACTCATGGTTTAATCCTGG
1 TTAATCTCAATTGTTG--TTTATTTTCTGACTCATGGTTCAATCCTGG
*
7114787 TTAATCTCAATTGTTG-TTATTTTCTGACTCGTGGTTCAATCC
1 TTAATCTCAATTGTTGTTTATTTTCTGACTCATGGTTCAATCC
7114829 CGGTCTCTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 23 0.61
48 15 0.39
ACGTcount: A:0.18, C:0.17, G:0.16, T:0.50
Consensus pattern (46 bp):
TTAATCTCAATTGTTGTTTATTTTCTGACTCATGGTTCAATCCTGG
Found at i:7114887 original size:58 final size:58
Alignment explanation
Indices: 7114808--7115012 Score: 151
Period size: 58 Copynumber: 3.4 Consensus size: 58
7114798 TGTTGTTATT
* *
7114808 TTCTGACTCGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAATTCAAATTGACGTTA
1 TTCTAACTCGCGGTTCAATCCCGGTCTCTTTATTGTGATTCAATTCAAATTGACGTTA
* ** * **** * * *
7114866 TTCTAACTCACGGTTCAATCCCAATTTCTTTAATCCAAAATCACAGTT-TAATCTCGATTGTTAT
1 TTCTAACTCGCGGTTCAATCCCGGTCTCTTT-ATTGTGATTCA-A-TTCAAAT-T-GA-CG---T
7114930 TA
57 TA
* * * *
7114932 TTTTCTGACTTGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAATTCAAATTGACATTA
1 --TTCTAACTCGCGGTTCAATCCCGGTCTCTTTATTGTGATTCAATTCAAATTGACGTTA
7114992 TTCTAACTCGCGGTTCAATCC
1 TTCTAACTCGCGGTTCAATCC
7115013 TGATTTCTTT
Statistics
Matches: 104, Mismatches: 31, Indels: 24
0.65 0.19 0.15
Matches are distributed among these distances:
58 43 0.41
59 6 0.06
60 7 0.07
61 3 0.03
62 2 0.02
63 1 0.01
64 2 0.02
65 3 0.03
66 7 0.07
67 6 0.06
68 24 0.23
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.41
Consensus pattern (58 bp):
TTCTAACTCGCGGTTCAATCCCGGTCTCTTTATTGTGATTCAATTCAAATTGACGTTA
Found at i:7115012 original size:126 final size:126
Alignment explanation
Indices: 7114787--7115227 Score: 596
Period size: 126 Copynumber: 3.4 Consensus size: 126
7114777 TTAATCCTGG
* * *
7114787 TTAATCTCAATTGTTGTTATTTTCTGACTCGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAAT
1 TTAATCTCGATTGTTATTATTTTCTGACTTGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAAT
* ** *
7114852 TCAAATTGACGTTATTCTAACTCACGGTTCAATCCCAATTTCTTTAATCCAAAATCACAGT
66 TCAAATTGACGTTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCATAGT
7114913 TTAATCTCGATTGTTATTATTTTCTGACTTGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAAT
1 TTAATCTCGATTGTTATTATTTTCTGACTTGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAAT
*
7114978 TCAAATTGACATTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCATAGT
66 TCAAATTGACGTTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCATAGT
* * * *
7115039 TTAATCTCGATTGTTGTTATTTTTTGACTTGTGGTTTAATCCTGGTCTCTTTATTTTCTAGCTTG
1 TTAATCTCGATTGTTATTATTTTCTGACTTGTGGTTCAATCCCGGTCTC------TT-TA--TTG
* * * *
7115104 TGATTCAA-TCAAAGTTGATGTTATTCTGACTCGCGGTTTAATCTTGATTTCTTTAATCCAAAAT
57 TGATTCAATTCAAA-TTGACGTTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAAT
*
7115168 CATAAT
121 CATAGT
* * * *
7115174 TTAATCTCGATTGTTATTTTTTTCTGACTTGTGGTTTAATCCTGATCTCTTTAT
1 TTAATCTCGATTGTTATTATTTTCTGACTTGTGGTTCAATCCCGGTCTCTTTAT
7115228 ATTTTGACTT
Statistics
Matches: 283, Mismatches: 22, Indels: 20
0.87 0.07 0.06
Matches are distributed among these distances:
126 164 0.58
128 2 0.01
129 2 0.01
132 2 0.01
133 2 0.01
134 5 0.02
135 106 0.37
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (126 bp):
TTAATCTCGATTGTTATTATTTTCTGACTTGTGGTTCAATCCCGGTCTCTTTATTGTGATTCAAT
TCAAATTGACGTTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAAATCATAGT
Found at i:7115208 original size:135 final size:135
Alignment explanation
Indices: 7114966--7115254 Score: 433
Period size: 135 Copynumber: 2.1 Consensus size: 135
7114956 GGTCTCTTTA
7114966 TTGTGATTCAATTCAAA-TTGACATTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAA
1 TTGTGATTCAA-TCAAAGTTGACATTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAA
* * *
7115030 AATCATAGTTTAATCTCGATTGTTGTTATTTTTTGACTTGTGGTTTAATCCTGGTCTCTTTAT-T
65 AATCATAATTTAATCTCGATTGTTATTATTTTTTGACTTGTGGTTTAATCCTGATCTCTTTATAT
7115094 TTCT-AGC
130 TT-TGA-C
** * * *
7115101 TTGTGATTCAATCAAAGTTGATGTTATTCTGACTCGCGGTTTAATCTTGATTTCTTTAATCCAAA
1 TTGTGATTCAATCAAAGTTGACATTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAA
7115166 ATCATAATTTAATCTCGATTGTTATT-TTTTTCTGACTTGTGGTTTAATCCTGATCTCTTTATAT
66 ATCATAATTTAATCTCGATTGTTATTATTTTT-TGACTTGTGGTTTAATCCTGATCTCTTTATAT
7115230 TTTGAC
130 TTTGAC
*
7115236 TTGTGATTCAATCTAAGTT
1 TTGTGATTCAATCAAAGTT
7115255 CAATCCTGAT
Statistics
Matches: 141, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
134 10 0.07
135 127 0.90
136 4 0.03
ACGTcount: A:0.24, C:0.16, G:0.13, T:0.47
Consensus pattern (135 bp):
TTGTGATTCAATCAAAGTTGACATTATTCTAACTCGCGGTTCAATCCTGATTTCTTTAATCCAAA
ATCATAATTTAATCTCGATTGTTATTATTTTTTGACTTGTGGTTTAATCCTGATCTCTTTATATT
TTGAC
Found at i:7115212 original size:68 final size:68
Alignment explanation
Indices: 7115003--7115226 Score: 195
Period size: 68 Copynumber: 3.3 Consensus size: 68
7114993 TCTAACTCGC
* * * *
7115003 GGTTCAATCCTGATTTCTTTAATCCAAAATCATAGTTTAATCTCGATTGTTGTTATTTTT-TGAC
1 GGTTTAATCCTGATCTCTTTAATCCAAAATCATAATTTAATCTCGATTGTTATT-TTTTTCTGAC
7115067 TTGT
65 TTGT
* * * * ** ** * * ** * *
7115071 GGTTTAATCCTGGTCTCTTTATTTTCTAGCTTGTGATTCAA--TC-AAAGTTGATGTTATTCTGA
1 GGTTTAATCCTGATCTCTTTA-ATCCAAAATCATAATTTAATCTCGATTGTT-ATTTTTTTCTGA
* *
7115133 CTCGC
64 CTTGT
* *
7115138 GGTTTAATCTTGATTTCTTTAATCCAAAATCATAATTTAATCTCGATTGTTATTTTTTTCTGACT
1 GGTTTAATCCTGATCTCTTTAATCCAAAATCATAATTTAATCTCGATTGTTATTTTTTTCTGACT
7115203 TGT
66 TGT
7115206 GGTTTAATCCTGATCTCTTTA
1 GGTTTAATCCTGATCTCTTTA
7115227 TATTTTGACT
Statistics
Matches: 110, Mismatches: 40, Indels: 12
0.68 0.25 0.07
Matches are distributed among these distances:
66 18 0.16
67 27 0.25
68 52 0.47
69 13 0.12
ACGTcount: A:0.22, C:0.16, G:0.14, T:0.48
Consensus pattern (68 bp):
GGTTTAATCCTGATCTCTTTAATCCAAAATCATAATTTAATCTCGATTGTTATTTTTTTCTGACT
TGT
Found at i:7115425 original size:10 final size:10
Alignment explanation
Indices: 7115411--7115462 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
7115401 TAAAAAAATT
7115411 CAAAAAAAAA
1 CAAAAAAAAA
* *
7115421 TAAAAACAAA
1 CAAAAAAAAA
7115431 CAAAAACAAAA
1 CAAAAA-AAAA
*
7115442 -ACAAAAAAA
1 CAAAAAAAAA
7115451 CAAAAGAAAAA
1 CAAAA-AAAAA
7115462 C
1 C
7115463 TTCTGAGAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
9 4 0.12
10 20 0.61
11 9 0.27
ACGTcount: A:0.83, C:0.13, G:0.02, T:0.02
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:7115434 original size:20 final size:19
Alignment explanation
Indices: 7115411--7115462 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
7115401 TAAAAAAATT
7115411 CAAAAAAAAATA-AAAACAAA
1 CAAAAAAAAA-ACAAAA-AAA
7115431 CAAAAACAAAAACAAAAAAA
1 CAAAAA-AAAAACAAAAAAA
*
7115451 CAAAAGAAAAAC
1 CAAAAAAAAAAC
7115463 TTCTGAGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 6 0.21
20 15 0.52
21 8 0.28
ACGTcount: A:0.83, C:0.13, G:0.02, T:0.02
Consensus pattern (19 bp):
CAAAAAAAAAACAAAAAAA
Found at i:7115435 original size:16 final size:15
Alignment explanation
Indices: 7115413--7115455 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 15
7115403 AAAAAATTCA
*
7115413 AAAAAAAATAAAAAC
1 AAAAAAAACAAAAAC
7115428 AAACAAAAACAAAAAC
1 AAA-AAAAACAAAAAC
7115444 -AAAAAAACAAAA
1 AAAAAAAACAAAA
7115456 GAAAAACTTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 10 0.38
15 5 0.19
16 11 0.42
ACGTcount: A:0.86, C:0.12, G:0.00, T:0.02
Consensus pattern (15 bp):
AAAAAAAACAAAAAC
Found at i:7115618 original size:21 final size:22
Alignment explanation
Indices: 7115585--7115625 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
7115575 GGTATATTTT
*
7115585 TTTTCATATATAACAATAATGA
1 TTTTAATATATAACAATAATGA
*
7115607 TTTTAATA-ATAATAATAAT
1 TTTTAATATATAACAATAAT
7115626 AAAATTGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (22 bp):
TTTTAATATATAACAATAATGA
Found at i:7117181 original size:8 final size:8
Alignment explanation
Indices: 7117161--7117206 Score: 60
Period size: 8 Copynumber: 6.0 Consensus size: 8
7117151 TAAAAACCCC
7117161 TAAAATC-
1 TAAAATCT
7117168 TAAAATCT
1 TAAAATCT
7117176 TAAAATCT
1 TAAAATCT
*
7117184 TAAAATCC
1 TAAAATCT
*
7117192 T-AAATCC
1 TAAAATCT
7117199 TAAAATCT
1 TAAAATCT
7117207 GAAGCCCCTA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
7 14 0.40
8 21 0.60
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (8 bp):
TAAAATCT
Found at i:7117181 original size:15 final size:15
Alignment explanation
Indices: 7117161--7117206 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
7117151 TAAAAACCCC
7117161 TAAAATCTAAAATCT
1 TAAAATCTAAAATCT
*
7117176 TAAAATCTTAAAATCC
1 TAAAATC-TAAAATCT
7117192 T-AAATCCTAAAATCT
1 TAAAAT-CTAAAATCT
7117207 GAAGCCCCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 18 0.67
16 9 0.33
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAAATCTAAAATCT
Found at i:7117219 original size:31 final size:31
Alignment explanation
Indices: 7117184--7117257 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
7117174 CTTAAAATCT
*
7117184 TAAAATCCTAAATCCTAAAAT-CTGAAGCCCC
1 TAAAATCCTAAATCCTAAAATAC-GAAACCCC
*
7117215 TAAAAT-CTAAAATCCTAAAATACGAAACTCC
1 TAAAATCCT-AAATCCTAAAATACGAAACCCC
7117246 TAAAAATCCTAA
1 T-AAAATCCTAA
7117258 GGACACGTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
30 2 0.05
31 25 0.68
32 8 0.22
33 2 0.05
ACGTcount: A:0.49, C:0.24, G:0.04, T:0.23
Consensus pattern (31 bp):
TAAAATCCTAAATCCTAAAATACGAAACCCC
Found at i:7117248 original size:16 final size:15
Alignment explanation
Indices: 7117162--7117250 Score: 63
Period size: 16 Copynumber: 5.8 Consensus size: 15
7117152 AAAAACCCCT
*
7117162 AAAAT-CTAAAATCTT
1 AAAATCCTAAAATC-G
* *
7117177 AAAATCTTAAAATCC
1 AAAATCCTAAAATCG
*
7117192 TAAATCCTAAAATCTG
1 AAAATCCTAAAATC-G
*** *
7117208 AAGCCCCTAAAATCT
1 AAAATCCTAAAATCG
7117223 AAAATCCTAAAATACG
1 AAAATCCTAAAAT-CG
*
7117239 AAACTCCTAAAA
1 AAAATCCTAAAA
7117251 ATCCTAAGGA
Statistics
Matches: 56, Mismatches: 15, Indels: 5
0.74 0.20 0.07
Matches are distributed among these distances:
15 27 0.48
16 29 0.52
ACGTcount: A:0.51, C:0.21, G:0.03, T:0.25
Consensus pattern (15 bp):
AAAATCCTAAAATCG
Found at i:7118877 original size:2 final size:2
Alignment explanation
Indices: 7118866--7118897 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7118856 TCCTTTTTCT
7118866 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7118898 TTCTTTAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7120426 original size:30 final size:30
Alignment explanation
Indices: 7120390--7120449 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
7120380 AATTTTATAC
7120390 TTTTATTGGT-CACAAATAAATTCTTATTTT
1 TTTTATTGGTAC-CAAATAAATTCTTATTTT
* *
7120420 TTTTATTTGTATCCAAATAAGTTCTTATTT
1 TTTTATTGGTA-CCAAATAAATTCTTATTT
7120450 CAAATAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 9 0.35
31 16 0.62
32 1 0.04
ACGTcount: A:0.28, C:0.10, G:0.07, T:0.55
Consensus pattern (30 bp):
TTTTATTGGTACCAAATAAATTCTTATTTT
Found at i:7124319 original size:31 final size:30
Alignment explanation
Indices: 7124272--7124344 Score: 82
Period size: 31 Copynumber: 2.5 Consensus size: 30
7124262 CATTTTACTT
7124272 AAATAAATT-TTA--TTTTTTATTGGT-CAC
1 AAATAAATTCTTATTTTTTTTATTGGTAC-C
*
7124299 AAATAAATTCTTATTTTTTTTATTTGTATCC
1 AAATAAATTCTTATTTTTTTTATTGGTA-CC
*
7124330 AAATAAGTTCTTATT
1 AAATAAATTCTTATT
7124345 CGAATAAAAG
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
27 9 0.23
28 3 0.08
30 11 0.28
31 15 0.38
32 1 0.03
ACGTcount: A:0.33, C:0.08, G:0.05, T:0.53
Consensus pattern (30 bp):
AAATAAATTCTTATTTTTTTTATTGGTACC
Found at i:7124436 original size:29 final size:30
Alignment explanation
Indices: 7124373--7124438 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
7124363 ATTTTAGGAG
7124373 TTTATTTAGATATAAACTAAAATTTAAAGA
1 TTTATTTAGATATAAACTAAAATTTAAAGA
* * *
7124403 CTTATTTAGATAT-AATTAAAGTTT-AAGAA
1 TTTATTTAGATATAAACTAAAATTTAAAG-A
7124432 TTTATTT
1 TTTATTT
7124439 GGGTAAAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 3 0.10
29 16 0.52
30 12 0.39
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.45
Consensus pattern (30 bp):
TTTATTTAGATATAAACTAAAATTTAAAGA
Found at i:7125173 original size:40 final size:43
Alignment explanation
Indices: 7125108--7125193 Score: 133
Period size: 40 Copynumber: 2.1 Consensus size: 43
7125098 AGCTGTTTTT
* *
7125108 TTCATTCTATGTGAGACACGTTAAAGATTAGACAT-GTA-GAA
1 TTCATTCTATGTAAGACACGGTAAAGATTAGACATGGTATGAA
7125149 TTCATTCT-TGTAAGACACGGTAAAGATTAGACATGGTATGAA
1 TTCATTCTATGTAAGACACGGTAAAGATTAGACATGGTATGAA
7125191 TTC
1 TTC
7125194 CCAACAAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
40 24 0.59
41 11 0.27
42 6 0.15
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (43 bp):
TTCATTCTATGTAAGACACGGTAAAGATTAGACATGGTATGAA
Found at i:7125370 original size:2 final size:2
Alignment explanation
Indices: 7125363--7125392 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7125353 ATAAGAAATC
*
7125363 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7125393 TTAGACTCGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7128283 original size:3 final size:3
Alignment explanation
Indices: 7128275--7128305 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
7128265 GTTTATTTAT
7128275 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
7128306 AAGGAAATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7130085 original size:141 final size:142
Alignment explanation
Indices: 7129821--7130096 Score: 448
Period size: 141 Copynumber: 2.0 Consensus size: 142
7129811 AAAGATTGGT
* * *
7129821 GGTGACTCCTTAAGTCTATGTCTAGTGATAGATCCATATATCTATACTTTATGATAGTTTGGTGA
1 GGTGACTCCTTAAGTCTATGTCTAGCGATAGATCCATAGATCCATACTTTATGATAGTTTGGTGA
7129886 CTCCACTGGAAAAAACGAAAGTCAGGCTAGTAAATGATTTCTTGTAATCCAAGCCTAACCTAATA
66 CTCCACTGGAAAAAACGAAAGTCAGGCTAGTAAATGATTTCTTGTAATCCAAGCCTAACCTAATA
7129951 AGTTTCAAATTA
131 AGTTTCAAATTA
* * *
7129963 GGTGACT-CTTAAGTCTATGTCTAGCGGTAGGTCTATAGATCCATACTTTATGATAGTTTGGTGA
1 GGTGACTCCTTAAGTCTATGTCTAGCGATAGATCCATAGATCCATACTTTATGATAGTTTGGTGA
* * *
7130027 CTCCACTAGG-AAAATCGAAAGTCAGGCTAGTAAATGATTTCTTGTTATCCAAGTCTAACCTAAT
66 CTCCACT-GGAAAAAACGAAAGTCAGGCTAGTAAATGATTTCTTGTAATCCAAGCCTAACCTAAT
7130091 AAGTTT
130 AAGTTT
7130097 AAGATTTTTT
Statistics
Matches: 124, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
141 115 0.93
142 9 0.07
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (142 bp):
GGTGACTCCTTAAGTCTATGTCTAGCGATAGATCCATAGATCCATACTTTATGATAGTTTGGTGA
CTCCACTGGAAAAAACGAAAGTCAGGCTAGTAAATGATTTCTTGTAATCCAAGCCTAACCTAATA
AGTTTCAAATTA
Found at i:7130133 original size:15 final size:15
Alignment explanation
Indices: 7130101--7130138 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
7130091 AAGTTTAAGA
*
7130101 TTTTTTTTTATCTTG
1 TTTTATTTTATCTTG
7130116 TTTGTATTTTAT-TTG
1 TTT-TATTTTATCTTG
7130131 TTTTATTT
1 TTTTATTT
7130139 ATTCATTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 5 0.24
15 9 0.43
16 7 0.33
ACGTcount: A:0.11, C:0.03, G:0.08, T:0.79
Consensus pattern (15 bp):
TTTTATTTTATCTTG
Found at i:7133423 original size:9 final size:9
Alignment explanation
Indices: 7133409--7133472 Score: 75
Period size: 9 Copynumber: 7.6 Consensus size: 9
7133399 TTATGCTTGA
7133409 AAAAAAATG
1 AAAAAAATG
7133418 AAAAAAATG
1 AAAAAAATG
*
7133427 AAAAATA-G
1 AAAAAAATG
7133435 -AAAAAATG
1 AAAAAAATG
7133443 -AAAAAATG
1 AAAAAAATG
7133451 -AAAAAAT-
1 AAAAAAATG
7133458 AGAAAAAATG
1 A-AAAAAATG
7133468 AAAAA
1 AAAAA
7133473 GAAAAAGTGA
Statistics
Matches: 49, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
7 5 0.10
8 17 0.35
9 26 0.53
10 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AAAAAAATG
Found at i:7133444 original size:25 final size:26
Alignment explanation
Indices: 7133410--7133472 Score: 112
Period size: 25 Copynumber: 2.5 Consensus size: 26
7133400 TATGCTTGAA
7133410 AAAAAATGAAAAAAATG-AAAAATAG
1 AAAAAATGAAAAAAATGAAAAAATAG
7133435 AAAAAATG-AAAAAATGAAAAAATAG
1 AAAAAATGAAAAAAATGAAAAAATAG
7133460 AAAAAATGAAAAA
1 AAAAAATGAAAAA
7133473 GAAAAAGTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
24 8 0.22
25 24 0.67
26 4 0.11
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (26 bp):
AAAAAATGAAAAAAATGAAAAAATAG
Found at i:7133454 original size:14 final size:14
Alignment explanation
Indices: 7133437--7133485 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
7133427 AAAAATAGAA
7133437 AAAATGAAAAAATG
1 AAAATGAAAAAATG
7133451 AAAAAATAGAAAAAATG
1 --AAAAT-GAAAAAATG
* *
7133468 AAAAAGAAAAAGTG
1 AAAATGAAAAAATG
7133482 AAAA
1 AAAA
7133486 AGGAGGACTC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 12 0.40
15 4 0.13
16 5 0.17
17 9 0.30
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (14 bp):
AAAATGAAAAAATG
Found at i:7133486 original size:14 final size:14
Alignment explanation
Indices: 7133410--7133487 Score: 66
Period size: 17 Copynumber: 5.0 Consensus size: 14
7133400 TATGCTTGAA
*
7133410 AAAAAATGAAAAAA
1 AAAAAATGAAAAAG
7133424 ATGAAAAATAGAAAAAATG
1 A--AAAAAT-G-AAAAA-G
7133443 AAAAAATGAAAAAATAG
1 AAAAAATG--AAAA-AG
7133460 AAAAAATGAAAAAG
1 AAAAAATGAAAAAG
*
7133474 AAAAAGTGAAAAAG
1 AAAAAATGAAAAAG
7133488 GAGGACTCAA
Statistics
Matches: 55, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
14 16 0.29
15 4 0.07
16 7 0.13
17 21 0.38
18 6 0.11
19 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (14 bp):
AAAAAATGAAAAAG
Found at i:7133487 original size:8 final size:8
Alignment explanation
Indices: 7133410--7133486 Score: 97
Period size: 8 Copynumber: 9.6 Consensus size: 8
7133400 TATGCTTGAA
7133410 AAAAAATG
1 AAAAAATG
7133418 AAAAAAATG
1 -AAAAAATG
7133427 -AAAAATAG
1 AAAAAAT-G
7133435 AAAAAATG
1 AAAAAATG
7133443 AAAAAATG
1 AAAAAATG
7133451 AAAAAATAG
1 AAAAAAT-G
7133460 AAAAAATG
1 AAAAAATG
7133468 -AAAAA-G
1 AAAAAATG
*
7133474 AAAAAGTG
1 AAAAAATG
7133482 AAAAA
1 AAAAA
7133487 GGAGGACTCA
Statistics
Matches: 62, Mismatches: 1, Indels: 11
0.84 0.01 0.15
Matches are distributed among these distances:
6 1 0.02
7 15 0.24
8 24 0.39
9 22 0.35
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:7134553 original size:40 final size:41
Alignment explanation
Indices: 7134485--7134778 Score: 418
Period size: 42 Copynumber: 7.1 Consensus size: 41
7134475 ATGATTGTCA
*
7134485 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGCTTAG
1 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
7134526 AGGAGCAATTTA-TTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
7134566 AGGAGCAATTTA-CTTTCAAAGTTCCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAG-T-CGTGGTGCCTCTGTTTAG
7134606 AGGAGCAATTTATTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
*
7134648 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTGTTTAG
7134690 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * * *
7134732 AGGGGCAATTTA-CTTTCTAAAGTCGTTGAGCCTTTGTTTAG
1 AGGAGCAATTTATTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
*
7134773 AAGAGC
1 AGGAGC
7134779 TTTGATTAAA
Statistics
Matches: 233, Mismatches: 12, Indels: 16
0.89 0.05 0.06
Matches are distributed among these distances:
40 79 0.34
41 42 0.18
42 107 0.46
43 5 0.02
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.37
Consensus pattern (41 bp):
AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:7135013 original size:10 final size:10
Alignment explanation
Indices: 7135000--7135044 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
7134990 TTCTCTCTTT
7135000 TGTATTTTTA
1 TGTATTTTTA
7135010 TGTATTTTTA
1 TGTATTTTTA
7135020 T-TATTTATTA
1 TGTATTT-TTA
*
7135030 T-TATTATTA
1 TGTATTTTTA
7135039 TGTATT
1 TGTATT
7135045 AATATATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 9 0.28
10 23 0.72
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (10 bp):
TGTATTTTTA
Found at i:7135021 original size:16 final size:16
Alignment explanation
Indices: 7134997--7135136 Score: 65
Period size: 16 Copynumber: 8.3 Consensus size: 16
7134987 TTTTTCTCTC
7134997 TTTTGTATT-TTTATGTA
1 TTTT-TATTATTTAT-TA
7135014 TTTTTATTATTTATTA
1 TTTTTATTATTTATTA
* *
7135030 TTATTATTATGTATTA
1 TTTTTATTATTTATTA
* *
7135046 -ATATATATATTTATT-
1 TTTTTAT-TATTTATTA
* *
7135061 TTTTTATTAGATTA-GA
1 TTTTTATTA-TTTATTA
*
7135077 TTTATATGTATTTTATTTA
1 TTTTTAT-TA-TTTA-TTA
*
7135096 TATAGTTATATATTTATTA
1 T-T-TTTAT-TATTTATTA
7135115 TTATTATATTA-TTATTA
1 TT-TT-TATTATTTATTA
7135132 TTTTT
1 TTTTT
7135137 TTTGTTTTGT
Statistics
Matches: 94, Mismatches: 18, Indels: 24
0.69 0.13 0.18
Matches are distributed among these distances:
15 6 0.06
16 42 0.45
17 22 0.23
18 5 0.05
19 9 0.10
20 5 0.05
21 5 0.05
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (16 bp):
TTTTTATTATTTATTA
Found at i:7135028 original size:13 final size:13
Alignment explanation
Indices: 7135002--7135133 Score: 69
Period size: 13 Copynumber: 9.8 Consensus size: 13
7134992 CTCTCTTTTG
*
7135002 TATTTTTATGTATT
1 TATTATTAT-TATT
7135016 T-TTATTATT-TAT
1 TATTATTATTAT-T
*
7135028 TATTATTATTATG
1 TATTATTATTATT
7135041 TATTAATATATATATT
1 TATT-AT-TAT-TATT
*
7135057 TATT-TTTTTATT
1 TATTATTATTATT
* * *
7135069 AGATTA-GATT-TA
1 -TATTATTATTATT
7135081 TATGTATT-TTATT
1 TAT-TATTATTATT
7135094 TATATAGTTATATATT
1 TAT-TA-TTAT-TATT
7135110 TATTATTATTATAT
1 TATTATTATTAT-T
7135124 TATTATTATT
1 TATTATTATT
7135134 TTTTTTGTTT
Statistics
Matches: 91, Mismatches: 12, Indels: 30
0.68 0.09 0.23
Matches are distributed among these distances:
11 3 0.03
12 12 0.13
13 34 0.37
14 22 0.24
15 6 0.07
16 14 0.15
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (13 bp):
TATTATTATTATT
Found at i:7135030 original size:3 final size:3
Alignment explanation
Indices: 7135002--7135133 Score: 53
Period size: 3 Copynumber: 42.3 Consensus size: 3
7134992 CTCTCTTTTG
* * *
7135002 TAT TTT TAT GTAT TTT TAT TATT TAT TAT TAT TAT TAT GTAT TAA TA-
1 TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT -TAT TAT TAT
* * *
7135049 TAT ATATT TAT T-T TTT TAT TA- GAT TA- GAT T-T ATAT GTAT T-T TATT
1 TAT -TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TA-T
7135094 TAT ATAGT TAT ATATT TAT TAT TAT TA- TAT TAT TAT TAT T
1 TAT -TA-T TAT -TA-T TAT TAT TAT TAT TAT TAT TAT TAT T
7135134 TTTTTTGTTT
Statistics
Matches: 100, Mismatches: 11, Indels: 36
0.68 0.07 0.24
Matches are distributed among these distances:
2 11 0.11
3 58 0.58
4 28 0.28
5 3 0.03
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:7135063 original size:45 final size:46
Alignment explanation
Indices: 7135012--7135133 Score: 121
Period size: 45 Copynumber: 2.7 Consensus size: 46
7135002 TATTTTTATG
7135012 TATTTTTATTATTTATTATTATTATTATGTATTAATATATATA-TT-
1 TATTTTTATTATTTATTA-TATTATTATGTATTAATATATATAGTTA
* * * *
7135057 TATTTTT-TTATTAGATTAGATT-TATATGTATTTTATTTATATAGTTA
1 TATTTTTATTATT-TATTATATTAT-TATGTA-TTAATATATATAGTTA
*
7135104 TATATTTATTA-TTATTATATTATTAT-TATT
1 TATTTTTATTATTTATTATATTATTATGTATT
7135134 TTTTTTGTTT
Statistics
Matches: 63, Mismatches: 7, Indels: 15
0.74 0.08 0.18
Matches are distributed among these distances:
43 1 0.02
44 16 0.25
45 23 0.37
46 12 0.19
47 8 0.13
48 3 0.05
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (46 bp):
TATTTTTATTATTTATTATATTATTATGTATTAATATATATAGTTA
Found at i:7135134 original size:73 final size:73
Alignment explanation
Indices: 7135003--7135138 Score: 174
Period size: 73 Copynumber: 1.9 Consensus size: 73
7134993 TCTCTTTTGT
* *
7135003 ATTTTTATGTATTTTTATTATTTATTATTATTATTATGTATTAATATATATATTTATTTTTTTAT
1 ATTTATATGTATTTTTATTATATATTATTATTATTATGTATTAATATATATATTTATTTTTTTAT
7135068 TAGATTAG
66 TAGATTAG
7135076 ATTTATATGTA-TTTTATTTATATAGTTATATATTTATTAT-TATT-ATAT-TAT-TATTATTTT
1 ATTTATATGTATTTTTA-TTATATA-TTAT-TA-TTATTATGTATTAATATATATAT-TTATTTT
7135136 TTT
61 TTT
7135139 TGTTTTGTAA
Statistics
Matches: 56, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
72 6 0.11
73 29 0.52
74 8 0.14
75 6 0.11
76 7 0.12
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (73 bp):
ATTTATATGTATTTTTATTATATATTATTATTATTATGTATTAATATATATATTTATTTTTTTAT
TAGATTAG
Found at i:7135620 original size:25 final size:26
Alignment explanation
Indices: 7135585--7135639 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
7135575 GTAGGGATCA
*
7135585 GAAACAA-TTTTTTAGAAATTTTTGG
1 GAAACAATTTTTTTAGAAATTTCTGG
*
7135610 CGAAA-AATTTTTTTGGAAATTTCTGG
1 -GAAACAATTTTTTTAGAAATTTCTGG
7135636 GAAA
1 GAAA
7135640 TTTCCAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.36, C:0.05, G:0.18, T:0.40
Consensus pattern (26 bp):
GAAACAATTTTTTTAGAAATTTCTGG
Found at i:7135888 original size:16 final size:17
Alignment explanation
Indices: 7135858--7135896 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
7135848 TCGGTTTTTT
* *
7135858 AGAGAGAAGGGAGAGAA
1 AGAGGGAAGGAAGAGAA
7135875 A-AGGGAAGGAAGAGAA
1 AGAGGGAAGGAAGAGAA
7135891 AGAGGG
1 AGAGGG
7135897 GAGAGAAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (17 bp):
AGAGGGAAGGAAGAGAA
Found at i:7136215 original size:4 final size:4
Alignment explanation
Indices: 7136161--7136199 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
7136151 TTTTTTTGGA
*
7136161 ATTT -TTT ATTT ATTT GTTTT ATTT ATTT ATTT ATTT ATT
1 ATTT ATTT ATTT ATTT -ATTT ATTT ATTT ATTT ATTT ATT
7136200 AGATTAGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 3 0.10
4 25 0.81
5 3 0.10
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (4 bp):
ATTT
Found at i:7136242 original size:17 final size:18
Alignment explanation
Indices: 7136220--7136259 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
7136210 TATTTAATAT
7136220 TTTTTATCTTTATCTTA-
1 TTTTTATCTTTATCTTAC
* *
7136237 TTTTTATTTTTATTTTAC
1 TTTTTATCTTTATCTTAC
7136255 TTTTT
1 TTTTT
7136260 TTTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTATCTTTATCTTAC
Found at i:7136252 original size:11 final size:11
Alignment explanation
Indices: 7136220--7136269 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
7136210 TATTTAATAT
7136220 TTTTTATCTTTA
1 TTTTTAT-TTTA
*
7136232 -TCTTATTTTTA
1 TTTTTA-TTTTA
7136243 TTTTTATTTTA
1 TTTTTATTTTA
7136254 CTTTTT-TTTTA
1 -TTTTTATTTTA
7136265 TTTTT
1 TTTTT
7136270 CTTCTTCTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
10 5 0.15
11 18 0.55
12 10 0.30
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:7136269 original size:6 final size:6
Alignment explanation
Indices: 7136220--7136269 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
7136210 TATTTAATAT
* * *
7136220 TTTTTA TCTTTA -TCTTA TTTTTA TTTTTA -TTTTA CTTTT- TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
7136265 TTTTT
1 TTTTT
7136270 CTTCTTCTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
5 12 0.33
6 24 0.67
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:7136279 original size:22 final size:22
Alignment explanation
Indices: 7136220--7136269 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 22
7136210 TATTTAATAT
*
7136220 TTTTTATCTTTA-TCTTATTTTTA
1 TTTTTAT-TTTACT-TTTTTTTTA
7136243 TTTTTATTTTACTTTTTTTTTA
1 TTTTTATTTTACTTTTTTTTTA
7136265 TTTTT
1 TTTTT
7136270 CTTCTTCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 17 0.68
23 8 0.32
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTTATTTTACTTTTTTTTTA
Found at i:7136462 original size:123 final size:117
Alignment explanation
Indices: 7136328--7136607 Score: 436
Period size: 123 Copynumber: 2.3 Consensus size: 117
7136318 AATAAAAATC
*
7136328 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCGAAAAAA
1 AAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAA
7136393 AATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTT-GACAATCAAAATTTTCAAA
65 AATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAGA-AAT--AAA-TTTC--A
*
7136451 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAA
1 AAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAA
* *
7136516 AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCC
65 AATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
7136569 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTT
7136608 TCCCACACAA
Statistics
Matches: 149, Mismatches: 5, Indels: 11
0.90 0.03 0.07
Matches are distributed among these distances:
118 36 0.24
119 1 0.01
120 4 0.03
121 3 0.02
122 1 0.01
123 102 0.68
124 2 0.01
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (117 bp):
AAAAAATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAAAAAAA
ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
Found at i:7136484 original size:62 final size:61
Alignment explanation
Indices: 7136328--7136607 Score: 428
Period size: 61 Copynumber: 4.6 Consensus size: 61
7136318 AATAAAAATC
*
7136328 AAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCGAA
1 AAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAA
* *
7136389 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTT-GACAATCAAAATTTTCAAA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGA-AATC-AAAGTTTCAAA
*
7136451 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAA
* *
7136512 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAA-TTTC--C
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAA
*
7136569 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
7136608 TCCCACACAA
Statistics
Matches: 205, Mismatches: 10, Indels: 12
0.90 0.04 0.05
Matches are distributed among these distances:
57 38 0.19
59 4 0.02
60 5 0.02
61 101 0.49
62 55 0.27
63 2 0.01
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (61 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCAAA
Found at i:7137839 original size:20 final size:20
Alignment explanation
Indices: 7137814--7137856 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
7137804 TGAGATAAAA
*
7137814 GATCAAGTGTTAAAGAGGTT
1 GATCAAGTGTTAAACAGGTT
7137834 GATCAAGTGTTAAACAGGTT
1 GATCAAGTGTTAAACAGGTT
7137854 GAT
1 GAT
7137857 TAAAAGATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (20 bp):
GATCAAGTGTTAAACAGGTT
Found at i:7139233 original size:30 final size:30
Alignment explanation
Indices: 7139199--7139255 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
7139189 AGTTAATGTT
*
7139199 GAATTTTATTA-TTTATATTTTAATTTTATG
1 GAATTTTATTACTATAT-TTTTAATTTTATG
*
7139229 GAATTTTGTTACTATATTTTTAATTTT
1 GAATTTTATTACTATATTTTTAATTTT
7139256 TTTAAAATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.28, C:0.02, G:0.07, T:0.63
Consensus pattern (30 bp):
GAATTTTATTACTATATTTTTAATTTTATG
Found at i:7146443 original size:20 final size:21
Alignment explanation
Indices: 7146409--7146449 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
7146399 TTAAAATAGT
7146409 TTTAATTTTGATATT-TAAAA
1 TTTAATTTTGATATTGTAAAA
**
7146429 TTTAATTTTTTTATTGTAAAA
1 TTTAATTTTGATATTGTAAAA
7146450 AAAACATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.59
Consensus pattern (21 bp):
TTTAATTTTGATATTGTAAAA
Found at i:7147936 original size:3 final size:3
Alignment explanation
Indices: 7147928--7147980 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
7147918 AAAAGAAAAC
7147928 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7147976 AAT AA
1 AAT AA
7147981 ATACTTAATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7148085 original size:26 final size:26
Alignment explanation
Indices: 7148036--7148085 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
7148026 TGGGCTTGAC
* * * *
7148036 TAGAATGGGTCCGATTAGGTCTAAGT
1 TAGAATGGGCCCAATCAGGCCTAAGT
7148062 TAGAATGGGCCCAATCAGGCCTAA
1 TAGAATGGGCCCAATCAGGCCTAA
7148086 ACCAGAATAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGAATGGGCCCAATCAGGCCTAAGT
Found at i:7151535 original size:15 final size:15
Alignment explanation
Indices: 7151515--7151545 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7151505 TAAATGAGCC
7151515 TAATAATAAGTTACA
1 TAATAATAAGTTACA
7151530 TAATAATAAGTTACA
1 TAATAATAAGTTACA
7151545 T
1 T
7151546 TATGGGTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (15 bp):
TAATAATAAGTTACA
Found at i:7152794 original size:202 final size:198
Alignment explanation
Indices: 7152446--7153025 Score: 495
Period size: 202 Copynumber: 2.9 Consensus size: 198
7152436 GTTAAACATC
*** *
7152446 AACTTAAAATCAATTGACA-TAAAGTAGAA-GGATTTAACCTGAATATAAGATTATGAGATATTT
1 AACTTAAAATCAATTGACAGT-AAGT-GAATGGGCCTAACCTGAATATAAGATTATAAGATATTT
* * * ** *** * *
7152509 GATATTCATTAGATGTGTAATAACCTACTTTAATGGGCTCCTATCATGTGTAGACAAAAATGGAA
64 GATATTCATTAGATGTG-AATAA-CTAATTTAA-AGTCTCC-ATCACATGTAGGTGAAGATAGAA
* **
7152574 GAAGC-TTTCTACGTGACAAATTAGAAAAGGGTAACAGGAAAA-AAA--TCTTAGCCCTAATACC
125 GAAGCTTTTC-AAGTGACAAATTAGAAAAGGACAAC--GAAAAGAAAGTTC-TAGCCCTAATACC
7152635 ATGTCAAGCAT-TC-
186 ATGTCAA--ATATCT
* * *
7152648 AACTTAAAA-CTAATT-AGCAGTAAGTGGA-GAGGTCTAACTTGAATATAAGATTATAAGATATT
1 AACTTAAAATC-AATTGA-CAGTAAGTGAATG-GGCCTAACCTGAATATAAGATTATAAGATATT
7152710 TGATATTCATTAGATGTGAGATAACTTAATTTAGCAAGTCTCCATCACATGTAGGTGAAGAT-GA
63 TGATATTCATTAGATGTGA-ATAAC-TAATTTA--AAGTCTCCATCACATGTAGGTGAAGATAGA
* * *
7152774 AGGAAGCTTTTCAAGTGACAAATTAAGAAAA-GACAACGAAAAGAAAGTTCTGGCTCTGATACCA
124 A-GAAGCTTTTCAAGTGACAAATT-AGAAAAGGACAACGAAAAGAAAGTTCTAGCCCTAATACCA
*
7152838 TGTTAAATATCT
187 TGTCAAATATCT
* * *
7152850 AACTTAAAATCAATTGATAGTAAGTGAATGGGCCTAACCTGAATATAAGAATACAAGATATTTGA
1 AACTTAAAATCAATTGACAGTAAGTGAATGGGCCTAACCTGAATATAAGATTATAAGATATTTGA
* ** * * *
7152915 TATTCATTAGATGTAAATTAACCCATTCTAATAAGTCTCCATCACATATAAGTGAAGATAGAAAA
66 TATTCATTAGATGTGAA-TAACTAATT-T-A-AAGTCTCCATCACATGTAGGTGAAGATAGAAGA
** * * *
7152980 AATTTTTCATGTGACAAATTAAAAAAGGACAACGAAAA-AAAATTCT
127 AGCTTTTCAAGTGACAAATTAGAAAAGGACAACGAAAAGAAAGTTCT
7153026 GACTCTAATA
Statistics
Matches: 315, Mismatches: 39, Indels: 49
0.78 0.10 0.12
Matches are distributed among these distances:
200 7 0.02
201 31 0.10
202 251 0.80
203 25 0.08
204 1 0.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (198 bp):
AACTTAAAATCAATTGACAGTAAGTGAATGGGCCTAACCTGAATATAAGATTATAAGATATTTGA
TATTCATTAGATGTGAATAACTAATTTAAAGTCTCCATCACATGTAGGTGAAGATAGAAGAAGCT
TTTCAAGTGACAAATTAGAAAAGGACAACGAAAAGAAAGTTCTAGCCCTAATACCATGTCAAATA
TCT
Found at i:7156457 original size:21 final size:20
Alignment explanation
Indices: 7156440--7156478 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
7156430 AAGAATAATG
7156440 ATAT-TAAAAATAAAAATAT
1 ATATGTAAAAATAAAAATAT
*
7156459 ATATGTATAAAT-AAAATAT
1 ATATGTAAAAATAAAAATAT
7156478 A
1 A
7156479 CAATAAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (20 bp):
ATATGTAAAAATAAAAATAT
Found at i:7158065 original size:20 final size:20
Alignment explanation
Indices: 7158039--7158077 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
7158029 AACTCTTTTG
7158039 ATTTTTTTAAAAAA-ATTAT
1 ATTTTTTTAAAAAATATTAT
7158058 ATTTTTTTAAAAAATATTAT
1 ATTTTTTTAAAAAATATTAT
7158078 TCAAAATATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
ATTTTTTTAAAAAATATTAT
Found at i:7158121 original size:17 final size:16
Alignment explanation
Indices: 7158094--7158127 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
7158084 TATCAATTAT
*
7158094 TATTATTTTTATTTTG
1 TATTATTTTTATATTG
7158110 TATTATTTTTTATATTG
1 TATTA-TTTTTATATTG
7158127 T
1 T
7158128 TTAAATAAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (16 bp):
TATTATTTTTATATTG
Found at i:7158266 original size:14 final size:13
Alignment explanation
Indices: 7158247--7158280 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7158237 AGTTTTATCT
7158247 AAAAATTACATTTA
1 AAAAATT-CATTTA
7158261 AAAAATTCATTTA
1 AAAAATTCATTTA
*
7158274 AACAATT
1 AAAAATT
7158281 TATCATTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (13 bp):
AAAAATTCATTTA
Found at i:7158363 original size:20 final size:21
Alignment explanation
Indices: 7158326--7158365 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
7158316 TGTAGACACC
7158326 CAATTGGGTCCAGGCCCAAAT
1 CAATTGGGTCCAGGCCCAAAT
*
7158347 CAATTGGG-CCTGGCCCAAA
1 CAATTGGGTCCAGGCCCAAA
7158366 AGGGTAAGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.28, C:0.30, G:0.25, T:0.17
Consensus pattern (21 bp):
CAATTGGGTCCAGGCCCAAAT
Found at i:7158452 original size:3 final size:3
Alignment explanation
Indices: 7158435--7158577 Score: 50
Period size: 3 Copynumber: 47.0 Consensus size: 3
7158425 GTATTTTAAG
* *
7158435 TAT T-T TAT TATT TAT TAT TAT TAT TAT TGT GTAT TAA TA- TAT ATATT
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT -TA-T
* * * *
7158482 TAT TTT TTT TA- TGT TAA TAT T-T ATAT GTAT T-T TATT TAT ATAGT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TA-T TAT -TA-T
* * *
7158526 TA- TATT TGT TAT TAT TA- TGT TAT CAT TAT TAT TA- TAT TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
7158569 TAT CAT TAT
1 TAT TAT TAT
7158578 CATTTTTTTT
Statistics
Matches: 105, Mismatches: 18, Indels: 34
0.67 0.11 0.22
Matches are distributed among these distances:
2 13 0.12
3 69 0.66
4 21 0.20
5 2 0.02
ACGTcount: A:0.30, C:0.01, G:0.05, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:7158499 original size:27 final size:27
Alignment explanation
Indices: 7158468--7158520 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
7158458 TTATTGTGTA
* *
7158468 TTAATATATATATTTATTTTTTTTATG
1 TTAATATATATATGTATTTTATTTATG
*
7158495 TTAATATTTATATGTATTTTATTTAT
1 TTAATATATATATGTATTTTATTTAT
7158521 ATAGTTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (27 bp):
TTAATATATATATGTATTTTATTTATG
Found at i:7158554 original size:17 final size:17
Alignment explanation
Indices: 7158534--7158577 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
7158524 GTTATATTTG
*
7158534 TTATTATTATGTTATCA
1 TTATTATTATATTATCA
*
7158551 TTATTATTATATTATTA
1 TTATTATTATATTATCA
*
7158568 TTATCATTAT
1 TTATTATTAT
7158578 CATTTTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (17 bp):
TTATTATTATATTATCA
Found at i:7158555 original size:14 final size:12
Alignment explanation
Indices: 7158545--7158577 Score: 59
Period size: 11 Copynumber: 2.8 Consensus size: 12
7158535 TATTATTATG
7158545 TTATCATTATTA
1 TTATCATTATTA
7158557 TTAT-ATTATTA
1 TTATCATTATTA
7158568 TTATCATTAT
1 TTATCATTAT
7158578 CATTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATCATTATTA
Found at i:7159029 original size:26 final size:24
Alignment explanation
Indices: 7158991--7159040 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
7158981 GATCGAAAAT
*
7158991 AATTTTTTAGAAATTTTTGGCGAAA
1 AATTTTTTAGAAATTTCTGG-GAAA
*
7159016 AATTTTTCTGGAAATTTCTGGGAAA
1 AATTTTT-TAGAAATTTCTGGGAAA
7159041 TTTCCAGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.34, C:0.06, G:0.18, T:0.42
Consensus pattern (24 bp):
AATTTTTTAGAAATTTCTGGGAAA
Found at i:7159588 original size:15 final size:15
Alignment explanation
Indices: 7159568--7159691 Score: 56
Period size: 15 Copynumber: 7.7 Consensus size: 15
7159558 GAAATTTTTA
7159568 TTTATTTATTTTATC
1 TTTATTTATTTTATC
*
7159583 TTTATTTATTTTTATTAGA
1 TTTATTTA-TTTTA-T--C
*
7159602 TTTATTTAATATTTTTTC
1 TTTA-TT--TATTTTATC
*
7159620 TTTATCTTATTTTTATT
1 TTTAT-TTA-TTTTATC
* *
7159637 TTTGTTTTACTTT-TC
1 TTT-ATTTATTTTATC
*
7159652 TTTAATTT-TTTTATT
1 TTT-ATTTATTTTATC
7159667 TTTATTTATTTTCA-C
1 TTTATTTATTTT-ATC
*
7159682 TTTTTTTATT
1 TTTATTTATT
7159692 ATTCTATTTT
Statistics
Matches: 82, Mismatches: 14, Indels: 26
0.67 0.11 0.21
Matches are distributed among these distances:
14 7 0.09
15 32 0.39
16 11 0.13
17 13 0.16
18 6 0.07
19 4 0.05
20 3 0.04
21 4 0.05
22 2 0.02
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.74
Consensus pattern (15 bp):
TTTATTTATTTTATC
Found at i:7159588 original size:19 final size:19
Alignment explanation
Indices: 7159564--7159631 Score: 68
Period size: 19 Copynumber: 3.6 Consensus size: 19
7159554 TTTTGAAATT
7159564 TTTATTTATTTATTTTATC
1 TTTATTTATTTATTTTATC
**
7159583 TTTATTTATTT-TTATTAGA
1 TTTATTTATTTATT-TTATC
* *
7159602 TTTATTTA-ATATTTTTTC
1 TTTATTTATTTATTTTATC
7159620 TTTATCTTATTT
1 TTTAT-TTATTT
7159632 TTATTTTTGT
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
18 10 0.26
19 27 0.71
20 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.72
Consensus pattern (19 bp):
TTTATTTATTTATTTTATC
Found at i:7159606 original size:38 final size:38
Alignment explanation
Indices: 7159564--7159636 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
7159554 TTTTGAAATT
*
7159564 TTTATTTATTTATTTTATCTTTAT-TTATTTTTATTAGA
1 TTTATTTA-ATATTTTATCTTTATCTTATTTTTATTAGA
*
7159602 TTTATTTAATATTTTTTCTTTATCTTATTTTTATT
1 TTTATTTAATATTTTATCTTTATCTTATTTTTATT
7159637 TTTGTTTTAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 13 0.41
38 19 0.59
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.73
Consensus pattern (38 bp):
TTTATTTAATATTTTATCTTTATCTTATTTTTATTAGA
Found at i:7159669 original size:19 final size:18
Alignment explanation
Indices: 7159630--7159678 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
7159620 TTTATCTTAT
*
7159630 TTTTATTT-TTGTTTTAC
1 TTTTATTTATTTTTTTAC
* *
7159647 TTTTCTTTAATTTTTTTAT
1 TTTTATTT-ATTTTTTTAC
7159666 TTTTATTTATTTT
1 TTTTATTTATTTT
7159679 CACTTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 7 0.27
18 5 0.19
19 14 0.54
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTATTTATTTTTTTAC
Found at i:7159699 original size:23 final size:23
Alignment explanation
Indices: 7159659--7159702 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7159649 TTCTTTAATT
*
7159659 TTTTTATTTTTATTTATTTTCAC
1 TTTTTATTATTATTTATTTTCAC
7159682 TTTTT-TTATTATTCTATTTTC
1 TTTTTATTATTATT-TATTTTC
7159703 TTTAAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTATTATTATTTATTTTCAC
Found at i:7159780 original size:60 final size:60
Alignment explanation
Indices: 7159711--7160006 Score: 458
Period size: 60 Copynumber: 5.0 Consensus size: 60
7159701 TCTTTAAAGA
7159711 AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
*
7159771 AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
* * * *
7159831 AAAAT-AAAATTT-CAAAAAAAGGGATTTTTGGGGAAAAGTTGAAAGTATTAATTTTCTTTG
1 AAAATCAAAATTTCCAAAAAAA--TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
7159891 AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-
1 AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
* *
7159950 AAAAGT-AAATTTTCAAAAAAAATATTTTT-GGGAAAAAGTTGAAAGTATCAATTTTCC
1 AAAA-TCAAAATTTCCAAAAAAATATTTTTAGGG-AAAAGTTGAAAGTATCAATTTTCC
7160007 CTACACAAGA
Statistics
Matches: 218, Mismatches: 12, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
58 11 0.05
59 56 0.26
60 136 0.62
61 7 0.03
62 8 0.04
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.34
Consensus pattern (60 bp):
AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:7160052 original size:6 final size:6
Alignment explanation
Indices: 7160041--7160069 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
7160031 CTTCCTTTCT
7160041 ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
7160070 TCTTTAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (6 bp):
ATTTTG
Found at i:7163879 original size:18 final size:17
Alignment explanation
Indices: 7163849--7163888 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
7163839 AATAATAGGT
7163849 GAAGAATGAGAAAAAAAA
1 GAAG-ATGAGAAAAAAAA
7163867 GAAGATGATGAAAAAAAA
1 GAAGATGA-GAAAAAAAA
7163885 -AAGA
1 GAAGA
7163889 AAAAAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.70, C:0.00, G:0.23, T:0.07
Consensus pattern (17 bp):
GAAGATGAGAAAAAAAA
Found at i:7163893 original size:9 final size:9
Alignment explanation
Indices: 7163879--7163913 Score: 52
Period size: 9 Copynumber: 3.7 Consensus size: 9
7163869 AGATGATGAA
7163879 AAAAAAAAG
1 AAAAAAAAG
7163888 AAAAAAAAG
1 AAAAAAAAG
7163897 AAAGAAAGAAG
1 AAA-AAA-AAG
7163908 AAAAAA
1 AAAAAA
7163914 TGAAAAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
9 12 0.50
10 6 0.25
11 6 0.25
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:7163899 original size:20 final size:20
Alignment explanation
Indices: 7163876--7163913 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7163866 AGAAGATGAT
7163876 GAAAAAAAAAAGAAAAAAAA
1 GAAAAAAAAAAGAAAAAAAA
* *
7163896 GAAAGAAAGAAGAAAAAA
1 GAAAAAAAAAAGAAAAAA
7163914 TGAAAAAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (20 bp):
GAAAAAAAAAAGAAAAAAAA
Found at i:7163911 original size:29 final size:27
Alignment explanation
Indices: 7163857--7163921 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
7163847 GTGAAGAATG
*
7163857 AGAAAAAAAAGAAGATGATGAAAAAAAAA
1 AGAAAAAAAAGAAGA-GAAG-AAAAAAAA
7163886 AGAAAAAAAAGAA-AGAAAGAAGAAAAAA
1 AGAAAAAAAAGAAGAG-AAGAA-AAAAAA
*
7163914 TGAAAAAA
1 AGAAAAAA
7163922 GAGATTCAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 3 0.09
28 16 0.50
29 13 0.41
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (27 bp):
AGAAAAAAAAGAAGAGAAGAAAAAAAA
Found at i:7164848 original size:16 final size:16
Alignment explanation
Indices: 7164827--7164880 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
7164817 TTTGCATAGC
7164827 ATGCATTGAAATTCAT
1 ATGCATTGAAATTCAT
* *
7164843 ATGCATTTG-CA-T-AGC
1 ATGCA-TTGAAATTCA-T
7164858 ATGCATTGAAATTCAT
1 ATGCATTGAAATTCAT
7164874 ATGCATT
1 ATGCATT
7164881 TGCATAGCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 10
0.67 0.09 0.23
Matches are distributed among these distances:
14 4 0.14
15 7 0.24
16 14 0.48
17 4 0.14
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (16 bp):
ATGCATTGAAATTCAT
Found at i:7164853 original size:31 final size:31
Alignment explanation
Indices: 7164815--7164890 Score: 152
Period size: 31 Copynumber: 2.5 Consensus size: 31
7164805 AATTGGCCAA
7164815 CATTTGCATAGCATGCATTGAAATTCATATG
1 CATTTGCATAGCATGCATTGAAATTCATATG
7164846 CATTTGCATAGCATGCATTGAAATTCATATG
1 CATTTGCATAGCATGCATTGAAATTCATATG
7164877 CATTTGCATAGCAT
1 CATTTGCATAGCAT
7164891 ACACTACTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36
Consensus pattern (31 bp):
CATTTGCATAGCATGCATTGAAATTCATATG
Found at i:7165177 original size:41 final size:42
Alignment explanation
Indices: 7165131--7165261 Score: 187
Period size: 41 Copynumber: 3.1 Consensus size: 42
7165121 ATGATTGTCA
* *
7165131 AGGAGCAATTTACTTTCT-AAAATCGTGGTGCCTCTGTTCAG
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
7165172 AGGAGCAATTTACTTT-TCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
* *
7165213 AGGAGCAATTTA-TACTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACT--TTCTCAAAGTCGTGGTGCCTCTGTTTAG
7165256 AGGAGC
1 AGGAGC
7165262 TTTGGTAAAA
Statistics
Matches: 82, Mismatches: 4, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
40 2 0.02
41 49 0.60
42 2 0.02
43 29 0.35
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (42 bp):
AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:7165283 original size:8 final size:8
Alignment explanation
Indices: 7165270--7165313 Score: 67
Period size: 8 Copynumber: 5.9 Consensus size: 8
7165260 GCTTTGGTAA
7165270 AAAAAAAC
1 AAAAAAAC
7165278 AAAAAAAC
1 AAAAAAAC
7165286 AAAAAAAC
1 AAAAAAAC
7165294 ---AAAAC
1 AAAAAAAC
7165299 AAAAAAAC
1 AAAAAAAC
7165307 AAAAAAA
1 AAAAAAA
7165314 TGACAATGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 5 0.15
8 28 0.85
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:7165289 original size:13 final size:13
Alignment explanation
Indices: 7165268--7165310 Score: 61
Period size: 13 Copynumber: 3.3 Consensus size: 13
7165258 GAGCTTTGGT
*
7165268 AAAA-AAAAACAAA
1 AAAACAAAAA-AAC
7165281 AAAACAAAAAAAC
1 AAAACAAAAAAAC
7165294 AAAACAAAAAAAC
1 AAAACAAAAAAAC
7165307 AAAA
1 AAAA
7165311 AAATGACAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
13 23 0.82
14 5 0.18
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAACAAAAAAAC
Found at i:7165297 original size:21 final size:20
Alignment explanation
Indices: 7165268--7165313 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 20
7165258 GAGCTTTGGT
7165268 AAAAAAAAACAAAAAAACAA
1 AAAAAAAAACAAAAAAACAA
7165288 AAAAACAAAACAAAAAAACAA
1 AAAAA-AAAACAAAAAAACAA
7165309 AAAAA
1 AAAAA
7165314 TGACAATGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAAAAAACAAAAAAACAA
Found at i:7165529 original size:16 final size:16
Alignment explanation
Indices: 7165510--7165658 Score: 60
Period size: 16 Copynumber: 9.1 Consensus size: 16
7165500 TCTTTTGTAT
7165510 TTTATGTATT-TTATTA
1 TTTAT-TATTATTATTA
*
7165526 TTTATTATTATTATTG
1 TTTATTATTATTATTA
* *
7165542 TGTATTAATA-TATATA
1 TTTATTATTATTAT-TA
* *
7165558 TTTATTTATT-TTTTTC
1 TTTA-TTATTATTATTA
*
7165574 TGTTAATATT-TATATGTA
1 T-TTATTATTAT-TAT-TA
7165592 TTTTATTTATATAGTTA-TA
1 -TTTA-TTAT-TA-TTATTA
*
7165611 TTTGTTATTATTA-T-
1 TTTATTATTATTATTA
* *
7165625 GTTATCATTATTATTA
1 TTTATTATTATTATTA
*
7165641 TATTATTATTATCATTA
1 T-TTATTATTATTATTA
7165658 T
1 T
7165659 CATTTTTTTT
Statistics
Matches: 99, Mismatches: 19, Indels: 29
0.67 0.13 0.20
Matches are distributed among these distances:
14 10 0.10
15 12 0.12
16 31 0.31
17 29 0.29
18 7 0.07
19 6 0.06
20 1 0.01
21 2 0.02
22 1 0.01
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.64
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:7165635 original size:17 final size:17
Alignment explanation
Indices: 7165615--7165658 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
7165605 GTTATATTTG
*
7165615 TTATTATTATGTTATCA
1 TTATTATTATATTATCA
*
7165632 TTATTATTATATTATTA
1 TTATTATTATATTATCA
*
7165649 TTATCATTAT
1 TTATTATTAT
7165659 CATTTTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (17 bp):
TTATTATTATATTATCA
Found at i:7165636 original size:14 final size:12
Alignment explanation
Indices: 7165626--7165658 Score: 59
Period size: 11 Copynumber: 2.8 Consensus size: 12
7165616 TATTATTATG
7165626 TTATCATTATTA
1 TTATCATTATTA
7165638 TTAT-ATTATTA
1 TTATCATTATTA
7165649 TTATCATTAT
1 TTATCATTAT
7165659 CATTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (12 bp):
TTATCATTATTA
Found at i:7166624 original size:19 final size:18
Alignment explanation
Indices: 7166600--7166669 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 18
7166590 CTTGAAATTT
7166600 TTTATTTATTTGTTTTATC
1 TTTATTTATTT-TTTTATC
**
7166619 TTTATTTATTTTTATTAGA
1 TTTATTTATTTTT-TTATC
*
7166638 TTTATTTAATATTTTT-TC
1 TTTATTT-ATTTTTTTATC
7166656 TTTATCTTATTTTT
1 TTTAT-TTATTTTT
7166670 ATTTTTGTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
18 12 0.29
19 25 0.60
20 5 0.12
ACGTcount: A:0.20, C:0.04, G:0.03, T:0.73
Consensus pattern (18 bp):
TTTATTTATTTTTTTATC
Found at i:7166632 original size:10 final size:10
Alignment explanation
Indices: 7166598--7166715 Score: 72
Period size: 10 Copynumber: 12.4 Consensus size: 10
7166588 TTCTTGAAAT
7166598 TTTTTATTTA
1 TTTTTATTTA
*
7166608 TTTGT-TTTA
1 TTTTTATTTA
*
7166617 TCTTTATTTA
1 TTTTTATTTA
7166627 TTTTTA-TTA
1 TTTTTATTTA
**
7166636 GATTTATTTA
1 TTTTTATTTA
* *
7166646 ATATT-TTT-
1 TTTTTATTTA
*
7166654 TCTTTATCTTA
1 TTTTTAT-TTA
7166665 TTTTTA-TT-
1 TTTTTATTTA
*
7166673 TTTGT-TTTA
1 TTTTTATTTA
* *
7166682 CTTTTCTTTAA
1 TTTTTATTT-A
7166693 TTTTT-TTTA
1 TTTTTATTTA
7166702 TTTTTATTTA
1 TTTTTATTTA
7166712 TTTT
1 TTTT
7166716 CACTTGTTTT
Statistics
Matches: 81, Mismatches: 17, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
8 8 0.10
9 29 0.36
10 34 0.42
11 10 0.12
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.75
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:7166814 original size:60 final size:58
Alignment explanation
Indices: 7166757--7167045 Score: 400
Period size: 60 Copynumber: 4.9 Consensus size: 58
7166747 AGAAAAATCA
*
7166757 AAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTAAAAAAT
1 AAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
7166815 AAATTTTCAAAAAAAAAGGATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAATTTTC--AAAAAAA-TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
7166876 CAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT
1 --AAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* * * *
7166936 AAATTTTCAAAAAAAGGGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAGT
1 AAATTTTCAAAAAAA--TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
7166996 AAATTTTTAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
7167046 CTACACAAGA
Statistics
Matches: 208, Mismatches: 14, Indels: 18
0.87 0.06 0.08
Matches are distributed among these distances:
58 55 0.26
60 100 0.48
61 46 0.22
63 7 0.03
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (58 bp):
AAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
Found at i:7166892 original size:121 final size:119
Alignment explanation
Indices: 7166750--7167045 Score: 479
Period size: 121 Copynumber: 2.5 Consensus size: 119
7166740 TCTTTAAAGA
7166750 AAAATCAAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTAAAAAAT
1 AAAATCAAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTAAAAAAT
7166815 AAATTTTCAAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
66 AAATTTTC-AAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
* * *
7166870 GAAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAA
1 -AAAATCAAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTAAAAAA
* * *
7166935 TAAATTTTCAAAAAAAGGGATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTT
65 TAAATTTTCAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
* *
7166990 AAAAGT--AAATTTTTAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAA-TCAAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
7167046 CTACACAAGA
Statistics
Matches: 164, Mismatches: 10, Indels: 5
0.92 0.06 0.03
Matches are distributed among these distances:
118 46 0.28
119 4 0.02
120 44 0.27
121 70 0.43
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.34
Consensus pattern (119 bp):
AAAATCAAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTAAAAAAT
AAATTTTCAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
Found at i:7167091 original size:6 final size:6
Alignment explanation
Indices: 7167080--7167108 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
7167070 CTTCCTTTCT
7167080 ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTT
7167109 TCTTTAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (6 bp):
ATTTTG
Found at i:7167701 original size:3 final size:3
Alignment explanation
Indices: 7167695--7167726 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7167685 TATTTTGCCA
7167695 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7167727 ATTATCATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Done.