Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 39 of 100
Found at i:7341356 original size:12 final size:12
Alignment explanation
Indices: 7341305--7341373 Score: 51
Period size: 12 Copynumber: 6.0 Consensus size: 12
7341295 ACTTATAAAT
*
7341305 AATACATTAATA
1 AATATATTAATA
7341317 AATAATATT-A-A
1 AAT-ATATTAATA
*
7341328 AATATAATAA-A
1 AATATATTAATA
7341339 TAATATATTAATA
1 -AATATATTAATA
7341352 AATAT-TATAAT-
1 AATATAT-TAATA
7341363 AAT-TATTAATA
1 AATATATTAATA
7341374 TTATAAAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
10 9 0.19
11 11 0.23
12 22 0.47
13 5 0.11
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (12 bp):
AATATATTAATA
Found at i:7341360 original size:15 final size:15
Alignment explanation
Indices: 7341299--7341379 Score: 54
Period size: 15 Copynumber: 5.1 Consensus size: 15
7341289 AATTTTACTT
* *
7341299 ATAAATAATACATTA
1 ATAAATAATATAATA
7341314 ATAAATAATATTAAAATATA
1 ATAAATAATA-T---A-ATA
*
7341334 ATAAATAATATATTA
1 ATAAATAATATAATA
*
7341349 ATAAATATTATAATA
1 ATAAATAATATAATA
* * *
7341364 ATTATTAATATTATA
1 ATAAATAATATAATA
7341379 A
1 A
7341380 AAAACAGATT
Statistics
Matches: 52, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
15 37 0.71
16 1 0.02
19 2 0.04
20 12 0.23
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (15 bp):
ATAAATAATATAATA
Found at i:7347066 original size:50 final size:50
Alignment explanation
Indices: 7347012--7347117 Score: 160
Period size: 51 Copynumber: 2.1 Consensus size: 50
7347002 AATTTATCAC
* *
7347012 ATAAATTTTTAAATCAACTTTTAA-ACAAAATATTTCCAGAAAAAGATAAA
1 ATAAAATTTCAAATCAACTTTTAACA-AAAATATTTCCAGAAAAAGATAAA
*
7347062 ATAAAAATTTCAAATCGACTTTTAACAAAAATATTTCCAGAAAAAGATAAA
1 AT-AAAATTTCAAATCAACTTTTAACAAAAATATTTCCAGAAAAAGATAAA
7347113 ATAAA
1 ATAAA
7347118 CCATATTCAT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
50 5 0.10
51 45 0.88
52 1 0.02
ACGTcount: A:0.56, C:0.10, G:0.05, T:0.29
Consensus pattern (50 bp):
ATAAAATTTCAAATCAACTTTTAACAAAAATATTTCCAGAAAAAGATAAA
Found at i:7347460 original size:19 final size:21
Alignment explanation
Indices: 7347443--7347484 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
7347433 AATCCAATCC
7347443 CTTATATTTATTAAAATCAGTCT
1 CTTATATTTATTAAAATCA--CT
7347466 CTTATATTTATTAAAATCA
1 CTTATATTTATTAAAATCA
7347485 ATAATTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.38, C:0.12, G:0.02, T:0.48
Consensus pattern (21 bp):
CTTATATTTATTAAAATCACT
Found at i:7351897 original size:2 final size:2
Alignment explanation
Indices: 7351890--7351920 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7351880 TTCGGTCAAA
*
7351890 AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7351921 CGAATTTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7360770 original size:23 final size:24
Alignment explanation
Indices: 7360726--7360775 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
7360716 ATGAAATCAT
** *
7360726 AAGTTTTTTT-TTTTTTTTTTTTC
1 AAGTTTTTTTATTTGATCTTTTTC
7360749 AAGTTTTTTTATTTGATCTTTTTC
1 AAGTTTTTTTATTTGATCTTTTTC
7360773 AAG
1 AAG
7360776 GTTCTTAGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 10 0.43
24 13 0.57
ACGTcount: A:0.16, C:0.06, G:0.08, T:0.70
Consensus pattern (24 bp):
AAGTTTTTTTATTTGATCTTTTTC
Found at i:7361083 original size:19 final size:19
Alignment explanation
Indices: 7361051--7361090 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7361041 TAAAAATAAA
7361051 AAAATTTAAAATTA-ATTC
1 AAAATTTAAAATTAGATTC
*
7361069 AAAATTATAATATTAGATTC
1 AAAATT-TAAAATTAGATTC
7361089 AA
1 AA
7361091 TTCAAATTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 7 0.37
20 6 0.32
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (19 bp):
AAAATTTAAAATTAGATTC
Found at i:7361135 original size:24 final size:24
Alignment explanation
Indices: 7361108--7361156 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
7361098 TCGATTTTTT
* *
7361108 TATTTGATTTAAATTAAATTTAAA
1 TATTTAATATAAATTAAATTTAAA
*
7361132 TATTTAATATATATTAAATTTAAA
1 TATTTAATATAAATTAAATTTAAA
7361156 T
1 T
7361157 CAAGATATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
TATTTAATATAAATTAAATTTAAA
Found at i:7361208 original size:18 final size:18
Alignment explanation
Indices: 7361181--7361215 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7361171 AAAAAATTGA
*
7361181 ATTAAATTATATATTTTT
1 ATTAAATTATACATTTTT
*
7361199 ATTAATTTATACATTTT
1 ATTAAATTATACATTTT
7361216 AAAATTTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTAAATTATACATTTTT
Found at i:7369985 original size:6 final size:6
Alignment explanation
Indices: 7369976--7370003 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7369966 TCACTTCCCA
7369976 TTTCTC TTTCTC TTTCTC TTTCTC TTTC
1 TTTCTC TTTCTC TTTCTC TTTCTC TTTC
7370004 CAGATTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTCTC
Found at i:7371948 original size:21 final size:19
Alignment explanation
Indices: 7371904--7371953 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
7371894 TATGTTTGGT
*
7371904 AAGAAGGAAAAAAAAAGGT
1 AAGAAGGAAAAAAAAAGGA
*
7371923 GAGAAGGGAAAAAATAAAGGA
1 AAGAA-GGAAAAAA-AAAGGA
*
7371944 AAGAAAGAAA
1 AAGAAGGAAA
7371954 TTTGTTTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 4 0.16
20 12 0.48
21 9 0.36
ACGTcount: A:0.68, C:0.00, G:0.28, T:0.04
Consensus pattern (19 bp):
AAGAAGGAAAAAAAAAGGA
Found at i:7376287 original size:33 final size:34
Alignment explanation
Indices: 7376250--7376315 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 34
7376240 GTTACATTCA
*
7376250 TCTAACAAATTAATTAATTTTT-ATTTTAATTAT
1 TCTAACAAATTAAATAATTTTTAATTTTAATTAT
7376283 TCTAACAAATTAAATAATTTTTAATTTTAATTA
1 TCTAACAAATTAAATAATTTTTAATTTTAATTA
7376316 ATACAAAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 21 0.68
34 10 0.32
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (34 bp):
TCTAACAAATTAAATAATTTTTAATTTTAATTAT
Found at i:7381709 original size:34 final size:35
Alignment explanation
Indices: 7381650--7381717 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 35
7381640 GTTACATTCA
7381650 TCTAACAAATTAAATAAATTTTTAATTTTAATTAT
1 TCTAACAAATTAAATAAATTTTTAATTTTAATTAT
7381685 TCTAACAAATTAAAT-AATTTTTAATTTTAATTA
1 TCTAACAAATTAAATAAATTTTTAATTTTAATTA
7381718 ATACAAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 18 0.55
35 15 0.45
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.49
Consensus pattern (35 bp):
TCTAACAAATTAAATAAATTTTTAATTTTAATTAT
Found at i:7381724 original size:31 final size:34
Alignment explanation
Indices: 7381634--7381724 Score: 107
Period size: 34 Copynumber: 2.6 Consensus size: 34
7381624 TTCTGTATTA
*
7381634 TTAATTGTTACATTCATCTAACAAATTAAATAAATTT
1 TTAATT-TTA-ATT-ATATAACAAATTAAATAAATTT
*
7381671 TTAATTTTAATTATTCTAACAAATTAAAT-AATTT
1 TTAATTTTAATTA-TATAACAAATTAAATAAATTT
7381705 TTAATTTTAATTA-AT-ACAAA
1 TTAATTTTAATTATATAACAAA
7381725 AATAAAATTA
Statistics
Matches: 52, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
31 5 0.10
32 1 0.02
34 19 0.37
35 18 0.35
36 3 0.06
37 6 0.12
ACGTcount: A:0.45, C:0.08, G:0.01, T:0.46
Consensus pattern (34 bp):
TTAATTTTAATTATATAACAAATTAAATAAATTT
Found at i:7386466 original size:52 final size:52
Alignment explanation
Indices: 7386376--7386522 Score: 201
Period size: 52 Copynumber: 2.8 Consensus size: 52
7386366 TATAACCATA
* *
7386376 CAAACTTGCCCATTAAGAATCACTCTTT-TCTTAGAATTCTTCTCTTTG-AAGT
1 CAAACTTACCTATTAAGAATC-CTCTTTCTCTTAGAATTCTTCTC-TTGCAAGT
* * *
7386428 CAAACTTACCTATTAAGAGTCC-CTTTCTTTTTGAAATTCTTCTCTTGCAAGT
1 CAAACTTACCTATTAAGAATCCTCTTTCTCTTAG-AATTCTTCTCTTGCAAGT
7386480 CAAACTTACCTATTAAGAATCCTCTTTCTCTTAGAATTCTTCT
1 CAAACTTACCTATTAAGAATCCTCTTTCTCTTAGAATTCTTCT
7386523 TTTATAAGTT
Statistics
Matches: 83, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
50 4 0.05
51 8 0.10
52 62 0.75
53 9 0.11
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCCTCTTTCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:7387455 original size:52 final size:52
Alignment explanation
Indices: 7387310--7387448 Score: 201
Period size: 52 Copynumber: 2.7 Consensus size: 52
7387300 AAACTTGTCA
** *
7387310 ATTAAGAAT-CTCTCTTCTCTTAGAATTCTTCTCCTGTAAGTCAAACTTGCCT
1 ATTAAGAATCCTCT-TTCTCTTAGAATTCTTCTTTTGTAAGTCAAACTTACCT
* *
7387362 ATTAAGAATCC-CTTTCCTTTTAGAATTCTTCTTTTGTAAGTCAAACTTACTT
1 ATTAAGAATCCTCTTT-CTCTTAGAATTCTTCTTTTGTAAGTCAAACTTACCT
7387414 ATTAAGAATCCTCTTTCTCTTAGAATTCTTCTTTT
1 ATTAAGAATCCTCTTTCTCTTAGAATTCTTCTTTT
7387449 ACAAGTCTTC
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
51 2 0.03
52 71 0.91
53 5 0.06
ACGTcount: A:0.25, C:0.22, G:0.08, T:0.45
Consensus pattern (52 bp):
ATTAAGAATCCTCTTTCTCTTAGAATTCTTCTTTTGTAAGTCAAACTTACCT
Found at i:7387496 original size:11 final size:11
Alignment explanation
Indices: 7387480--7387510 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
7387470 GCAATATCTG
7387480 ACAAATCTCAA
1 ACAAATCTCAA
7387491 ACAAATCTCAA
1 ACAAATCTCAA
7387502 ACAAATCTC
1 ACAAATCTC
7387511 TTATGGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:7391430 original size:36 final size:35
Alignment explanation
Indices: 7391360--7391432 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
7391350 TAATTGTTCC
* *
7391360 ATTCATCCAATAAGTTAAACAATTTTTTAATTTAA
1 ATTCATCCAACAAATTAAACAATTTTTTAATTTAA
* * *
7391395 ATTCATCTAACAAATTAAATAATTTTTTAATTTTA
1 ATTCATCCAACAAATTAAACAATTTTTTAATTTAA
7391430 ATT
1 ATT
7391433 TACTATTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.42, C:0.10, G:0.01, T:0.47
Consensus pattern (35 bp):
ATTCATCCAACAAATTAAACAATTTTTTAATTTAA
Found at i:7399377 original size:48 final size:48
Alignment explanation
Indices: 7399298--7399392 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
7399288 AAAGAAGATA
* * * *
7399298 AAGAAACTGATTCACTTTTATTGAAATGTAAAATATATTATTTTGCTG
1 AAGAAACTAATTCACTTTGATTGAAAGGTAAAATAGATTATTTTGCTG
* * *
7399346 AAGAAACTAATTCACTTTGATTGCAAGGTAAAGTAGATTGTTTTGCT
1 AAGAAACTAATTCACTTTGATTGAAAGGTAAAATAGATTATTTTGCT
7399393 AGTTTGCAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (48 bp):
AAGAAACTAATTCACTTTGATTGAAAGGTAAAATAGATTATTTTGCTG
Found at i:7408121 original size:34 final size:36
Alignment explanation
Indices: 7408050--7408121 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 36
7408040 TTTTTCAAAC
* * *
7408050 TTATTTGAAAATATATTTTTTAATTCTTCCTTTTTT
1 TTATTTGAAAAGATATTTTTTAATTCTTCATTCTTT
*
7408086 TTATTTGAAAAGAT-TTTTTT-ATTCTTTATTCTTT
1 TTATTTGAAAAGATATTTTTTAATTCTTCATTCTTT
7408120 TT
1 TT
7408122 TTTTTGTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 13 0.41
35 6 0.19
36 13 0.41
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.65
Consensus pattern (36 bp):
TTATTTGAAAAGATATTTTTTAATTCTTCATTCTTT
Found at i:7408270 original size:24 final size:24
Alignment explanation
Indices: 7408215--7408281 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
7408205 AAAATAAAAT
7408215 AATAAAAAT-TGAAAATAAAGCAA
1 AATAAAAATATGAAAATAAAGCAA
*
7408238 AACTTAAAATATGAAAATAAATG-AA
1 AA-TAAAAATATGAAAATAAA-GCAA
*
7408263 AATAAAAAAATG-AAATAAA
1 AATAAAAATATGAAAATAAA
7408282 AATGGAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
23 9 0.24
24 14 0.37
25 14 0.37
26 1 0.03
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.19
Consensus pattern (24 bp):
AATAAAAATATGAAAATAAAGCAA
Found at i:7408280 original size:13 final size:14
Alignment explanation
Indices: 7408201--7408283 Score: 62
Period size: 13 Copynumber: 5.4 Consensus size: 14
7408191 TAAAAACCAG
7408201 TAAAAAAAT-AAAA
1 TAAAAAAATGAAAA
7408214 TAATAAAAATTGAAAA
1 TAA-AAAAA-TGAAAA
*
7408230 TAAAGCAAAACTTAAAATA
1 TAAA--AAAA--TGAAA-A
7408249 TGAAAATAAATGAAAA
1 T-AAAA-AAATGAAAA
7408265 TAAAAAAATG-AAA
1 TAAAAAAATGAAAA
7408278 TAAAAA
1 TAAAAA
7408284 TGGAAAAAGA
Statistics
Matches: 59, Mismatches: 2, Indels: 18
0.75 0.03 0.23
Matches are distributed among these distances:
13 12 0.20
14 10 0.17
15 6 0.10
16 9 0.15
17 8 0.14
18 6 0.10
19 5 0.08
20 3 0.05
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.19
Consensus pattern (14 bp):
TAAAAAAATGAAAA
Found at i:7408284 original size:25 final size:24
Alignment explanation
Indices: 7408202--7408290 Score: 74
Period size: 25 Copynumber: 3.5 Consensus size: 24
7408192 AAAAACCAGT
7408202 AAAAAAAT-AAAATAATAAAAATTGA
1 AAAAAAATGAAAATAA-AAAAA-TGA
* * *
7408227 AAATAAA-GCAAAACTTAAAATATGA
1 AAAAAAATG-AAAA-TAAAAAAATGA
*
7408252 AAATAAATGAAAATAAAAAAATGA
1 AAAAAAATGAAAATAAAAAAATGA
7408276 AATAAAAATGGAAAA
1 AA-AAAAAT-GAAAA
7408291 AGAAAACTTT
Statistics
Matches: 52, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
24 11 0.21
25 25 0.48
26 14 0.27
27 2 0.04
ACGTcount: A:0.72, C:0.02, G:0.08, T:0.18
Consensus pattern (24 bp):
AAAAAAATGAAAATAAAAAAATGA
Found at i:7409101 original size:3 final size:3
Alignment explanation
Indices: 7409093--7409246 Score: 98
Period size: 3 Copynumber: 53.0 Consensus size: 3
7409083 AACAAAAGGC
* * *
7409093 TAA TAA TAA TAA TGA TAA T-C TAA TAA TAA TAG TAA TAA CT-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
*
7409137 TAA T-A TAA T-A TACCA TAG T-A TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TA--A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
7409181 T-A TGA T-A TAA TACCA T-A TAA TACA TTAA TAA TAA T-A TGA T-A TAA
1 TAA TAA TAA TAA TA--A TAA TAA TA-A -TAA TAA TAA TAA TAA TAA TAA
*
7409225 TAA TAC T-A TAA TAA T-A TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA
7409247 ATGTAACAAA
Statistics
Matches: 122, Mismatches: 10, Indels: 38
0.72 0.06 0.22
Matches are distributed among these distances:
2 20 0.16
3 92 0.75
4 3 0.02
5 7 0.06
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:7409200 original size:41 final size:38
Alignment explanation
Indices: 7409093--7409246 Score: 135
Period size: 41 Copynumber: 4.0 Consensus size: 38
7409083 AACAAAAGGC
* *
7409093 TAATAATAATAATGATAAT-CTA-ATAATAATAGTAATAA
1 TAATAATAAT-ATAATAATACCATATAATAATA-TAATAA
7409131 CT-ATAATAATATAAT-ATACCATAGTATAATAATAATAATAA
1 -TAATAATAATATAATAATACC--A-TATAATAAT-ATAATAA
7409172 TAATAATAATATGATATAATACCATATAATACAT-TAATAA
1 TAATAATAATAT-A-ATAATACCATATAATA-ATATAATAA
*
7409212 TAAT-ATGATATAATAATA-C-TATAATAATATAATAA
1 TAATAATAATATAATAATACCATATAATAATATAATAA
7409247 ATGTAACAAA
Statistics
Matches: 100, Mismatches: 3, Indels: 28
0.76 0.02 0.21
Matches are distributed among these distances:
34 2 0.02
35 13 0.13
36 3 0.03
37 11 0.11
38 9 0.09
39 8 0.08
40 11 0.11
41 31 0.31
42 5 0.05
43 2 0.02
44 5 0.05
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.35
Consensus pattern (38 bp):
TAATAATAATATAATAATACCATATAATAATATAATAA
Found at i:7410276 original size:68 final size:68
Alignment explanation
Indices: 7410185--7410312 Score: 177
Period size: 68 Copynumber: 1.9 Consensus size: 68
7410175 TTTCAGGAAA
* * * *
7410185 GAAAGATTCACAAGATTCTAAGTTTTGTAAAGGTTTTAAATTCACAAAGATTTCAGGTTCGTAAA
1 GAAAGATTCACAAGATTCTAAGTTTTGCAAAGGTTCTAAATTCAAAAAGATTTCAAGTTCGTAAA
7410250 GAT
66 GAT
* * *
7410253 GAAATATTCATAAGATT-TCAAGTTTTGCAAAGGTTCTAGATTCAAAAAGATTTCAAGTTC
1 GAAAGATTCACAAGATTCT-AAGTTTTGCAAAGGTTCTAAATTCAAAAAGATTTCAAGTTC
7410313 ATAAGAATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
67 1 0.02
68 51 0.98
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (68 bp):
GAAAGATTCACAAGATTCTAAGTTTTGCAAAGGTTCTAAATTCAAAAAGATTTCAAGTTCGTAAA
GAT
Found at i:7411381 original size:11 final size:11
Alignment explanation
Indices: 7411306--7411393 Score: 68
Period size: 11 Copynumber: 7.7 Consensus size: 11
7411296 TCCCTTGTTC
7411306 TTTTTTTTTCT
1 TTTTTTTTTCT
*
7411317 TTTTTACTTCTCT
1 TTTTT--TTTTCT
* *
7411330 TTTTTGTTTCC
1 TTTTTTTTTCT
7411341 TTTTTTTTTCT
1 TTTTTTTTTCT
** *
7411352 GGTTTTTTTGT
1 TTTTTTTTTCT
*
7411363 TTACTTTTTTCT
1 TT-TTTTTTTCT
*
7411375 TTTTTTTCTCT
1 TTTTTTTTTCT
*
7411386 ATTTTTTT
1 TTTTTTTT
7411394 ATTTTTTGCA
Statistics
Matches: 57, Mismatches: 17, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
11 38 0.67
12 9 0.16
13 10 0.18
ACGTcount: A:0.03, C:0.12, G:0.05, T:0.80
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:7415259 original size:37 final size:38
Alignment explanation
Indices: 7415218--7415294 Score: 120
Period size: 38 Copynumber: 2.1 Consensus size: 38
7415208 TTTTAAAAAC
* *
7415218 TTATTTGAAAAG-TTTTTTTTTAATTCTTTCTTCTTTT
1 TTATTTGAAAAGATTCTTTTTTAATTCTGTCTTCTTTT
*
7415255 TTATTTGAAAAGATTCTTTTTTAATTCTGTCTTTTTTT
1 TTATTTGAAAAGATTCTTTTTTAATTCTGTCTTCTTTT
7415293 TT
1 TT
7415295 CTAGAAAGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
37 12 0.33
38 24 0.67
ACGTcount: A:0.19, C:0.08, G:0.06, T:0.66
Consensus pattern (38 bp):
TTATTTGAAAAGATTCTTTTTTAATTCTGTCTTCTTTT
Found at i:7415388 original size:17 final size:17
Alignment explanation
Indices: 7415368--7415431 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
7415358 AAACTAGTAA
7415368 AAAATAAAAAAAAGTTG
1 AAAATAAAAAAAAGTTG
*
7415385 AAAATAAAACAAAACTT-
1 AAAATAAAA-AAAAGTTG
* * *
7415402 AAAATATGAAAATAGATG
1 AAAATA-AAAAAAAGTTG
7415420 AAAATCAAAAAA
1 AAAAT-AAAAAA
7415432 TGAAATAAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
17 19 0.51
18 17 0.46
19 1 0.03
ACGTcount: A:0.70, C:0.05, G:0.08, T:0.17
Consensus pattern (17 bp):
AAAATAAAAAAAAGTTG
Found at i:7416309 original size:14 final size:14
Alignment explanation
Indices: 7416290--7416316 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7416280 TTGATTCAAA
7416290 ATCTCAATTTCCAT
1 ATCTCAATTTCCAT
7416304 ATCTCAATTTCCA
1 ATCTCAATTTCCA
7416317 AACTTCTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41
Consensus pattern (14 bp):
ATCTCAATTTCCAT
Found at i:7416373 original size:3 final size:3
Alignment explanation
Indices: 7416367--7416529 Score: 64
Period size: 3 Copynumber: 56.3 Consensus size: 3
7416357 GAAAGGCTAG
* * * *
7416367 TAA TAA TAA TGA TAA T-C TAA TAA TAA TAG TAA TAA CT-A TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
* * * *
7416411 T-A TAA T-A TACCA TAG T-A TAA TAA TAA TAA TAA TAA CAA CAA CAA
1 TAA TAA TAA TA--A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
7416455 CAA TAA T-A TGA T-A TAA TACCA T-A TAA TACA TTAA TAA TAA T-A TGA
1 TAA TAA TAA TAA TAA TAA TA--A TAA TAA TA-A -TAA TAA TAA TAA TAA
*
7416500 T-A TAA TAA TAC T-A TAA TAA T-A TAA T-A TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7416530 GTAACAAAAA
Statistics
Matches: 126, Mismatches: 14, Indels: 40
0.70 0.08 0.22
Matches are distributed among these distances:
2 22 0.17
3 94 0.75
4 3 0.02
5 7 0.06
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7416440 original size:29 final size:29
Alignment explanation
Indices: 7416364--7416529 Score: 91
Period size: 29 Copynumber: 5.8 Consensus size: 29
7416354 ATAGAAAGGC
* *
7416364 TAGTAATAATAATGATAATCTAATAATAA
1 TAGTAATAATAATAATAATATAATAATAA
*
7416393 TAGTAATAACT-ATAGTAATATAAT-ATACCA
1 TAGTAATAA-TAATAATAATATAATAATA--A
*
7416423 TAGT-ATAATAATAAT-A-ATAATAACAA
1 TAGTAATAATAATAATAATATAATAATAA
* ** * * **
7416449 CAACAACAATAAT-ATGATATAAT-ACCA
1 TAGTAATAATAATAATAATATAATAATAA
7416476 TA-TAATACATTAATAATAATATGATATAATAA
1 TAGTAATA-A-TAATAATAATAT-A-ATAATAA
*
7416508 TACT-ATAATAAT-ATAATATAAT
1 TAGTAATAATAATAATAATATAAT
7416530 GTAACAAAAA
Statistics
Matches: 106, Mismatches: 16, Indels: 32
0.69 0.10 0.21
Matches are distributed among these distances:
26 7 0.07
27 20 0.19
28 17 0.16
29 40 0.38
30 11 0.10
31 3 0.03
32 7 0.07
33 1 0.01
ACGTcount: A:0.55, C:0.07, G:0.04, T:0.33
Consensus pattern (29 bp):
TAGTAATAATAATAATAATATAATAATAA
Found at i:7416472 original size:34 final size:33
Alignment explanation
Indices: 7416433--7416509 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 33
7416423 TAGTATAATA
7416433 ATAATAATAATAACAACAACAACAATAATATGAT
1 ATAATAATAATAA-AACAACAACAATAATATGAT
* ** *
7416467 ATAATACCAT-ATAATACATTAATAATAATATGAT
1 ATAATA--ATAATAAAACAACAACAATAATATGAT
7416501 ATAATAATA
1 ATAATAATA
7416510 CTATAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
32 2 0.06
34 28 0.78
35 4 0.11
36 2 0.06
ACGTcount: A:0.58, C:0.09, G:0.03, T:0.30
Consensus pattern (33 bp):
ATAATAATAATAAAACAACAACAATAATATGAT
Found at i:7416506 original size:13 final size:12
Alignment explanation
Indices: 7416475--7416529 Score: 53
Period size: 11 Copynumber: 4.6 Consensus size: 12
7416465 ATATAATACC
7416475 ATATAATACAT-T
1 ATATAATA-ATAT
7416487 A-ATAATAATAT
1 ATATAATAATAT
7416498 GATATAATAATA-
1 -ATATAATAATAT
*
7416510 CTATAATAATAT
1 ATATAATAATAT
7416522 AATATAAT
1 -ATATAAT
7416530 GTAACAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
10 2 0.06
11 17 0.47
12 2 0.06
13 15 0.42
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (12 bp):
ATATAATAATAT
Found at i:7421500 original size:34 final size:35
Alignment explanation
Indices: 7421438--7421505 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 35
7421428 GTTACATTCA
*
7421438 TCTAACAAATTAAATAAATTTTTTATTTTAATTAT
1 TCTAACAAATTAAATAAATTTTTAATTTTAATTAT
*
7421473 TCTAACAAGTTAAAT-AATTTTTAATTTTAATTA
1 TCTAACAAATTAAATAAATTTTTAATTTTAATTA
7421506 ATACAAAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.43, C:0.06, G:0.01, T:0.50
Consensus pattern (35 bp):
TCTAACAAATTAAATAAATTTTTAATTTTAATTAT
Found at i:7429612 original size:36 final size:35
Alignment explanation
Indices: 7429542--7429614 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
7429532 TAATTGTTCC
* *
7429542 ATTCATCCAATAAGTTAAACAATTTTTTAATTTAA
1 ATTCATCCAACAAATTAAACAATTTTTTAATTTAA
* * *
7429577 ATTCATCTAACAAATTAAATAATTTTTTAATTTTA
1 ATTCATCCAACAAATTAAACAATTTTTTAATTTAA
7429612 ATT
1 ATT
7429615 TACTATTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.42, C:0.10, G:0.01, T:0.47
Consensus pattern (35 bp):
ATTCATCCAACAAATTAAACAATTTTTTAATTTAA
Found at i:7437580 original size:48 final size:48
Alignment explanation
Indices: 7437486--7437580 Score: 136
Period size: 48 Copynumber: 2.0 Consensus size: 48
7437476 CAAAAGAAGA
* * *
7437486 TAAAGAAACTAATTCACTTTTATTGAAATGTAAAATATATTATTTTGC
1 TAAAGAAACTAATTCACTTTGATTGAAAGGTAAAATAGATTATTTTGC
* * *
7437534 TAAAGAAACTAATTCACTTTGATTGCAAGGTAAAGTAGATTGTTTTG
1 TAAAGAAACTAATTCACTTTGATTGAAAGGTAAAATAGATTATTTTG
7437581 ATAGTTTGCA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (48 bp):
TAAAGAAACTAATTCACTTTGATTGAAAGGTAAAATAGATTATTTTGC
Found at i:7446299 original size:35 final size:36
Alignment explanation
Indices: 7446227--7446299 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 36
7446217 TTTTTCAAAC
* * *
7446227 TTATTTGAAAATATATTTTTTAATTCTTCCTTTTTT
1 TTATTTGAAAAGATATTTTTTAATTCTTCATTCTTT
* *
7446263 TTATTTGAAAAGAT-TTTTTTTATTCTTTATTCTTT
1 TTATTTGAAAAGATATTTTTTAATTCTTCATTCTTT
7446298 TT
1 TT
7446300 TTTTTGTTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
35 19 0.59
36 13 0.41
ACGTcount: A:0.23, C:0.07, G:0.04, T:0.66
Consensus pattern (36 bp):
TTATTTGAAAAGATATTTTTTAATTCTTCATTCTTT
Found at i:7446299 original size:36 final size:36
Alignment explanation
Indices: 7446227--7446305 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
7446217 TTTTTCAAAC
* *
7446227 TTATTTGAAAATATATTTTTTAATTCTTCCTTTTTT
1 TTATTTGAAAAGATATTTTTTAATTCTTCATTTTTT
* *
7446263 TTATTTGAAAAGAT-TTTTTTTATTCTTTATTCTTTT
1 TTATTTGAAAAGATATTTTTTAATTCTTCATT-TTTT
*
7446299 TTTTTTG
1 TTATTTG
7446306 TTTTCCAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
35 14 0.38
36 23 0.62
ACGTcount: A:0.22, C:0.06, G:0.05, T:0.67
Consensus pattern (36 bp):
TTATTTGAAAAGATATTTTTTAATTCTTCATTTTTT
Found at i:7446448 original size:24 final size:24
Alignment explanation
Indices: 7446393--7446459 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
7446383 AAAATAAAAT
7446393 AATAAAAAT-TGAAAATAAAGCAA
1 AATAAAAATATGAAAATAAAGCAA
*
7446416 AACTTAAAATATGAAAATAAATG-AA
1 AA-TAAAAATATGAAAATAAA-GCAA
*
7446441 AATAAAAAAATG-AAATAAA
1 AATAAAAATATGAAAATAAA
7446460 AATGGAAAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
23 9 0.24
24 14 0.37
25 14 0.37
26 1 0.03
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.19
Consensus pattern (24 bp):
AATAAAAATATGAAAATAAAGCAA
Found at i:7446458 original size:13 final size:14
Alignment explanation
Indices: 7446379--7446461 Score: 62
Period size: 13 Copynumber: 5.4 Consensus size: 14
7446369 TGAAAACCAG
7446379 TAAAAAAAT-AAAA
1 TAAAAAAATGAAAA
7446392 TAATAAAAATTGAAAA
1 TAA-AAAAA-TGAAAA
*
7446408 TAAAGCAAAACTTAAAATA
1 TAAA--AAAA--TGAAA-A
7446427 TGAAAATAAATGAAAA
1 T-AAAA-AAATGAAAA
7446443 TAAAAAAATG-AAA
1 TAAAAAAATGAAAA
7446456 TAAAAA
1 TAAAAA
7446462 TGGAAAAGAA
Statistics
Matches: 59, Mismatches: 2, Indels: 18
0.75 0.03 0.23
Matches are distributed among these distances:
13 12 0.20
14 10 0.17
15 6 0.10
16 9 0.15
17 8 0.14
18 6 0.10
19 5 0.08
20 3 0.05
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.19
Consensus pattern (14 bp):
TAAAAAAATGAAAA
Found at i:7446462 original size:25 final size:24
Alignment explanation
Indices: 7446380--7446473 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 24
7446370 GAAAACCAGT
7446380 AAAAAAAT-AAAATAATAAAAATTGA
1 AAAAAAATGAAAATAA-AAAAA-TGA
* * *
7446405 AAATAAA-GCAAAACTTAAAATATGA
1 AAAAAAATG-AAAA-TAAAAAAATGA
*
7446430 AAATAAATGAAAATAAAAAAATGA
1 AAAAAAATGAAAATAAAAAAATGA
*
7446454 AATAAAAATGGAAAAGAAAA
1 AA-AAAAAT-GAAAATAAAA
7446474 CTTTGCAATC
Statistics
Matches: 56, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
24 11 0.20
25 25 0.45
26 18 0.32
27 2 0.04
ACGTcount: A:0.72, C:0.02, G:0.09, T:0.17
Consensus pattern (24 bp):
AAAAAAATGAAAATAAAAAAATGA
Found at i:7447264 original size:3 final size:3
Alignment explanation
Indices: 7447256--7447406 Score: 81
Period size: 3 Copynumber: 51.0 Consensus size: 3
7447246 AACAAAAGGC
* * *
7447256 TAA TAA TAA TAA TGA TAA T-C TAA TAA TAA TAG TAA TAA CT-A TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
*
7447300 TAA T-A TAA T-A TACCA TAG TATA TAA TAA TAA TAA T-A TAA TAA T-A
1 TAA TAA TAA TAA TA--A TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
* *
7447344 TGA T-A TAA TACCA T-A TAA TACA TTAA TAA TAA T-A TGA T-A TAA TAA
1 TAA TAA TAA TA--A TAA TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA
*
7447389 TCTA TAA TAA T-A TAA TAA
1 T-AA TAA TAA TAA TAA TAA
7447407 ATGTAACAAA
Statistics
Matches: 118, Mismatches: 10, Indels: 40
0.70 0.06 0.24
Matches are distributed among these distances:
2 20 0.17
3 84 0.71
4 7 0.06
5 7 0.06
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:7447355 original size:42 final size:37
Alignment explanation
Indices: 7447278--7447387 Score: 121
Period size: 42 Copynumber: 2.7 Consensus size: 37
7447268 TGATAATCTA
*
7447278 ATAATAATAGTAATAACTATAATAATATAATATACCAT
1 ATAATAATAATAATAA-TATAATAATATAATATACCAT
7447316 AGTATATAATAATAATAATATAATAATATGATATAATACCAT
1 A-TA-ATAATAATAATAATATAATAATAT-A-AT-ATACCAT
7447358 ATAATACATTAATAATAATATGATATAATA
1 ATAATA-A-TAATAATAATAT-A-ATAATA
7447388 ATCTATAATA
Statistics
Matches: 62, Mismatches: 1, Indels: 12
0.83 0.01 0.16
Matches are distributed among these distances:
38 1 0.02
39 13 0.21
40 16 0.26
41 5 0.08
42 20 0.32
43 1 0.02
44 6 0.10
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.35
Consensus pattern (37 bp):
ATAATAATAATAATAATATAATAATATAATATACCAT
Found at i:7447362 original size:34 final size:32
Alignment explanation
Indices: 7447256--7447406 Score: 113
Period size: 34 Copynumber: 4.8 Consensus size: 32
7447246 AACAAAAGGC
* *
7447256 TAATAATAATAATGATAATCTAATAATA--ATA
1 TAATAAT-ATAATAATAATATAATAATATGATA
* **
7447287 GTAATAA-CT-ATAATAATATAAT-ATACCATA
1 -TAATAATATAATAATAATATAATAATATGATA
7447317 GT-AT-ATAATAATAATAATATAATAATATGATA
1 -TAATAAT-ATAATAATAATATAATAATATGATA
*
7447349 TAATACCATATAATACATTA-ATAATAATATGATA
1 TAATA--ATATAATA-ATAATATAATAATATGATA
*
7447383 TAATAATCT-ATAATAATATAATAA
1 TAATAATATAATAATAATATAATAA
7447407 ATGTAACAAA
Statistics
Matches: 98, Mismatches: 9, Indels: 25
0.74 0.07 0.19
Matches are distributed among these distances:
28 4 0.04
29 13 0.13
30 10 0.10
31 24 0.24
32 17 0.17
34 25 0.26
35 5 0.05
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (32 bp):
TAATAATATAATAATAATATAATAATATGATA
Found at i:7447398 original size:13 final size:14
Alignment explanation
Indices: 7447256--7447400 Score: 58
Period size: 13 Copynumber: 10.6 Consensus size: 14
7447246 AACAAAAGGC
7447256 TAATAATAATAATGA
1 TAATAATAAT-ATGA
7447271 TAATCTAATAATA--A
1 TAA--TAATAATATGA
* *
7447285 TAGTAATAACTATAA
1 TAATAATAA-TATGA
7447300 TAAT-ATAATAT-A
1 TAATAATAATATGA
** * *
7447312 CCATAGT-ATATAA
1 TAATAATAATATGA
*
7447325 TAATAATAATATAA
1 TAATAATAATATGA
* *
7447339 TAAT-ATGATATAA
1 TAATAATAATATGA
*
7447352 TACCAT-ATAATA-CA
1 TA--ATAATAATATGA
7447366 TTAATAATAATATGA
1 -TAATAATAATATGA
*
7447381 T-ATAATAATCT-A
1 TAATAATAATATGA
7447393 TAATAATA
1 TAATAATA
7447401 TAATAAATGT
Statistics
Matches: 103, Mismatches: 13, Indels: 30
0.71 0.09 0.21
Matches are distributed among these distances:
12 15 0.15
13 38 0.37
14 25 0.24
15 17 0.17
16 1 0.01
17 7 0.07
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36
Consensus pattern (14 bp):
TAATAATAATATGA
Found at i:7448413 original size:34 final size:34
Alignment explanation
Indices: 7448374--7448482 Score: 105
Period size: 34 Copynumber: 3.2 Consensus size: 34
7448364 GATTCTAAGT
*
7448374 TTCGTAAAGGTTCTAAATTCACAAAGATTTCAGG
1 TTCGTAAAGGTTATAAATTCACAAAGATTTCAGG
* * * *
7448408 TTCGTAAAGATGA-AATATTCA-TAAGATTTCAAGT
1 TTCGTAAAGGTTATAA-ATTCACAAAGATTTC-AGG
* * * *
7448442 TTTGCAAAGGTTATAGATTCACAAAGATTTCAAG
1 TTCGTAAAGGTTATAAATTCACAAAGATTTCAGG
7448476 TTCGTAA
1 TTCGTAA
7448483 GAATTTTAGG
Statistics
Matches: 56, Mismatches: 15, Indels: 8
0.71 0.19 0.10
Matches are distributed among these distances:
33 10 0.18
34 37 0.66
35 9 0.16
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.34
Consensus pattern (34 bp):
TTCGTAAAGGTTATAAATTCACAAAGATTTCAGG
Found at i:7453473 original size:40 final size:39
Alignment explanation
Indices: 7453396--7453474 Score: 124
Period size: 39 Copynumber: 2.0 Consensus size: 39
7453386 TTTTAAAAAC
* *
7453396 TTATTTGAAAAGTTTTTTTTTAATTCTTTCTTCTTTTTT
1 TTATTTGAAAAGTTCTTTTTTAATTCTGTCTTCTTTTTT
7453435 TTATTTGAAAAGATTCTTTTTTAATTCTGTCTT-TTTTTT
1 TTATTTGAAAAG-TTCTTTTTTAATTCTGTCTTCTTTTTT
7453474 T
1 T
7453475 CTAGAAAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 19 0.51
40 18 0.49
ACGTcount: A:0.19, C:0.08, G:0.06, T:0.67
Consensus pattern (39 bp):
TTATTTGAAAAGTTCTTTTTTAATTCTGTCTTCTTTTTT
Found at i:7453569 original size:18 final size:18
Alignment explanation
Indices: 7453548--7453612 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
7453538 AAACTAGTAA
7453548 AAAATAAAAAAAAAGTTG
1 AAAATAAAAAAAAAGTTG
* *
7453566 AAAATAAAACAAAACTT-
1 AAAATAAAAAAAAAGTTG
** * *
7453583 AAAATATGAAAATAGATG
1 AAAATAAAAAAAAAGTTG
7453601 AAAATCAAAAAA
1 AAAAT-AAAAAA
7453613 TGAAATAAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
17 11 0.31
18 20 0.57
19 4 0.11
ACGTcount: A:0.71, C:0.05, G:0.08, T:0.17
Consensus pattern (18 bp):
AAAATAAAAAAAAAGTTG
Found at i:7454050 original size:20 final size:20
Alignment explanation
Indices: 7454009--7454051 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7453999 AATTCATTCC
* * *
7454009 AAACCTAGAATTTTTCAGAA
1 AAACCTAAAATTTTCCAAAA
7454029 AAACCTAAAATTTTCCAAAA
1 AAACCTAAAATTTTCCAAAA
7454049 AAA
1 AAA
7454052 AAACCCAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.53, C:0.16, G:0.05, T:0.26
Consensus pattern (20 bp):
AAACCTAAAATTTTCCAAAA
Found at i:7454551 original size:3 final size:3
Alignment explanation
Indices: 7454543--7454702 Score: 58
Period size: 3 Copynumber: 55.3 Consensus size: 3
7454533 GAAAGGCTAG
* * * *
7454543 TAA TAA TAA TGA TAA T-C TAA TAA TAA TAG TAA TAA CT-A TAG TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
* * * * *
7454587 T-A TAA T-A TACCA TAG T-A TAA TAA TAA TAA TAA CAA CAA CAA CAA
1 TAA TAA TAA TA--A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
7454631 TAA T-A TGA T-A TAA TACCA T-A TAA TACA TTAA TAA TAA T-A TGA T-A
1 TAA TAA TAA TAA TAA TA--A TAA TAA TA-A -TAA TAA TAA TAA TAA TAA
*
7454675 TAA TAA TAC T-A TAA TAA T-A TAA T-A TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
7454703 GTAACAAAAA
Statistics
Matches: 123, Mismatches: 14, Indels: 40
0.69 0.08 0.23
Matches are distributed among these distances:
2 22 0.18
3 91 0.74
4 3 0.02
5 7 0.06
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7454616 original size:29 final size:29
Alignment explanation
Indices: 7454540--7454617 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
7454530 ACAGAAAGGC
* *
7454540 TAGTAATAATAATGATAATCTAATAATAA
1 TAGTAATAATAATAATAATATAATAATAA
*
7454569 TAGTAATAACT-ATAGTAATATAAT-ATACCA
1 TAGTAATAA-TAATAATAATATAATAATA--A
7454599 TAGT-ATAATAATAATAATA
1 TAGTAATAATAATAATAATA
7454618 ACAACAACAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
28 4 0.10
29 31 0.76
30 6 0.15
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (29 bp):
TAGTAATAATAATAATAATATAATAATAA
Found at i:7454679 original size:13 final size:12
Alignment explanation
Indices: 7454648--7454702 Score: 53
Period size: 11 Copynumber: 4.6 Consensus size: 12
7454638 ATATAATACC
7454648 ATATAATACAT-T
1 ATATAATA-ATAT
7454660 A-ATAATAATAT
1 ATATAATAATAT
7454671 GATATAATAATA-
1 -ATATAATAATAT
*
7454683 CTATAATAATAT
1 ATATAATAATAT
7454695 AATATAAT
1 -ATATAAT
7454703 GTAACAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
10 2 0.06
11 17 0.47
12 2 0.06
13 15 0.42
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (12 bp):
ATATAATAATAT
Found at i:7456242 original size:18 final size:17
Alignment explanation
Indices: 7456206--7456254 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
7456196 CAAAGGTTTT
*
7456206 AGATTCGCAAAGATTTC
1 AGATTCGCAAAAATTTC
*
7456223 AGGTTCGCAAAAACTTTC
1 AGATTCGCAAAAA-TTTC
*
7456241 AGATTTGCAAAAAT
1 AGATTCGCAAAAAT
7456255 AAAAGATTCG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (17 bp):
AGATTCGCAAAAATTTC
Found at i:7456308 original size:86 final size:85
Alignment explanation
Indices: 7456065--7456370 Score: 310
Period size: 86 Copynumber: 3.6 Consensus size: 85
7456055 TCACAAAGGT
* * * * * * *
7456065 TTTCAAATTTGTAAGAATGAAAGATTTGTAAGATTTCAAGTTTCATAGAGGTTCTAGATTCGCAA
1 TTTCAAATTTGCAAAAATAAAAGATTCGTAAGATTCCAAGTTTCACAAAGGTTCTAGATTCGCAA
7456130 AGATTTCAAGTTCGTAAGGAC
66 AGATTTC-AGTTCGTAAGGAC
** * ** *** *
7456151 TTTCAAATTCACAAGAAA-GAAAGATTCACAAGATTTTTAGTTTCACAAAGGTTTTAGATTCGCA
1 TTTCAAATTTGCAA-AAATAAAAGATTCGTAAGATTCCAAGTTTCACAAAGGTTCTAGATTCGCA
* **
7456215 AAGATTTCAGGTTCGCAAAAAC
65 AAGATTTCA-GTTCGTAAGGAC
* *
7456237 TTTCAGATTTGCAAAAATAAAAGATTCGTAAGATTCCAAGTTTCACAAAGGTTCTAGATTCGGAA
1 TTTCAAATTTGCAAAAATAAAAGATTCGTAAGATTCCAAGTTTCACAAAGGTTCTAGATTCGCAA
* *
7456302 AGATTTCTAGTTTGTAAGGAT
66 AGATTTC-AGTTCGTAAGGAC
* * *
7456323 TTTCAGA-TTCCTAAAAATAAAATATTCGTAAGATTCCCAAGTTTCACA
1 TTTCAAATTTGC-AAAAATAAAAGATTCGTAAGATT-CCAAGTTTCACA
7456371 GATGTTAGAA
Statistics
Matches: 181, Mismatches: 33, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
85 7 0.04
86 159 0.88
87 15 0.08
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.33
Consensus pattern (85 bp):
TTTCAAATTTGCAAAAATAAAAGATTCGTAAGATTCCAAGTTTCACAAAGGTTCTAGATTCGCAA
AGATTTCAGTTCGTAAGGAC
Found at i:7456780 original size:14 final size:14
Alignment explanation
Indices: 7456761--7456787 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7456751 CGGAATGAGT
7456761 GATAATTGATAATA
1 GATAATTGATAATA
7456775 GATAATTGATAAT
1 GATAATTGATAAT
7456788 GCAACAATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.37
Consensus pattern (14 bp):
GATAATTGATAATA
Found at i:7462349 original size:51 final size:52
Alignment explanation
Indices: 7462249--7462380 Score: 167
Period size: 51 Copynumber: 2.6 Consensus size: 52
7462239 TTTTAATAAA
* * *** *
7462249 AATTAATTCTAAAATTAAATCCCAAAAATCTCTTTCCATTATTTTTAATGCC
1 AATTGATTCTAAAATTAAATCCAAAAAATCTCTCAACATCATTTTTAATGCC
**
7462301 AATTGATTCTAAAATTAAATCCAAAAAATCTCTCAACATCA-TTTTAATGTG
1 AATTGATTCTAAAATTAAATCCAAAAAATCTCTCAACATCATTTTTAATGCC
* *
7462352 AATTGATTCTAGAATTAAATTCAAAAAAT
1 AATTGATTCTAAAATTAAATCCAAAAAAT
7462381 TTTTCAATTA
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
51 35 0.50
52 35 0.50
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.37
Consensus pattern (52 bp):
AATTGATTCTAAAATTAAATCCAAAAAATCTCTCAACATCATTTTTAATGCC
Found at i:7462605 original size:12 final size:13
Alignment explanation
Indices: 7462581--7462613 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
7462571 TCTTGTCTTC
7462581 TTATTTCTA-TTTT
1 TTATTT-TATTTTT
7462594 TTATTTTATTTTT
1 TTATTTTATTTTT
7462607 TTATTTT
1 TTATTTT
7462614 TAATTATGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 2 0.11
13 17 0.89
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (13 bp):
TTATTTTATTTTT
Found at i:7464627 original size:92 final size:93
Alignment explanation
Indices: 7464505--7464688 Score: 244
Period size: 92 Copynumber: 2.0 Consensus size: 93
7464495 ATCTATTATT
* * * *
7464505 TAAAGACTCTTAATCAAGCTTAAGAGTTTTTTAAAAAGATAAATTCATTACGTGAT-AAATCATA
1 TAAAGACTCTTAATCAAACTTAAAAGTTTTTTAAAAAAATAAATTCATTACGTGATAAAATCACA
* *
7464569 CTTTTTAAATTGTATCTAAATATAAATC
66 CTATTTAAATTATATCTAAATATAAATC
* * * * * *
7464597 TAAATACTCTTAATCAAATTTAAAATTTTTTTAAAAAAATAGATTCATTAGGTGATAAAATCACG
1 TAAAGACTCTTAATCAAACTTAAAAGTTTTTTAAAAAAATAAATTCATTACGTGATAAAATCACA
*
7464662 CTATTTAAATTATATCTAATTATAAAT
66 CTATTTAAATTATATCTAAATATAAAT
7464689 TTACAAATCT
Statistics
Matches: 78, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
92 48 0.62
93 30 0.38
ACGTcount: A:0.44, C:0.10, G:0.07, T:0.39
Consensus pattern (93 bp):
TAAAGACTCTTAATCAAACTTAAAAGTTTTTTAAAAAAATAAATTCATTACGTGATAAAATCACA
CTATTTAAATTATATCTAAATATAAATC
Found at i:7464792 original size:2 final size:2
Alignment explanation
Indices: 7464787--7464821 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7464777 ATATATTTGG
7464787 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7464822 CTCGGTGGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7469329 original size:6 final size:7
Alignment explanation
Indices: 7469314--7469338 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7469304 TTGGACGGCC
7469314 TTTTATT
1 TTTTATT
7469321 TTTTATT
1 TTTTATT
7469328 TTTTATT
1 TTTTATT
7469335 TTTT
1 TTTT
7469339 TGGGTATTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:7469558 original size:14 final size:15
Alignment explanation
Indices: 7469539--7469575 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
7469529 TTAGATTATT
7469539 TTAAATTATTTTG-A
1 TTAAATTATTTTGAA
7469553 TTAAA-TATTTTGAA
1 TTAAATTATTTTGAA
7469567 TTCAAATTA
1 TT-AAATTA
7469576 ATTCATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.35
14 8 0.40
15 3 0.15
16 2 0.10
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (15 bp):
TTAAATTATTTTGAA
Found at i:7477904 original size:50 final size:50
Alignment explanation
Indices: 7477829--7477930 Score: 186
Period size: 50 Copynumber: 2.0 Consensus size: 50
7477819 ATATCATTGG
* *
7477829 TTATATTTGTCTAGCTTGACTTGACTAGCCAAACCCACAATTAGAAGAAA
1 TTATATTTGTCTACCTTGACTTGACTAACCAAACCCACAATTAGAAGAAA
7477879 TTATATTTGTCTACCTTGACTTGACTAACCAAACCCACAATTAGAAGAAA
1 TTATATTTGTCTACCTTGACTTGACTAACCAAACCCACAATTAGAAGAAA
7477929 TT
1 TT
7477931 GCAATAAACT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (50 bp):
TTATATTTGTCTACCTTGACTTGACTAACCAAACCCACAATTAGAAGAAA
Found at i:7483721 original size:27 final size:26
Alignment explanation
Indices: 7483682--7483739 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
7483672 AATTCATAAG
7483682 ATTATAACAAAA-TAAGATAAAAGAAT
1 ATTATAACAAAATTAA-ATAAAAGAAT
* * *
7483708 ATTATGAATAAAATTAAATTAAATAAT
1 ATTAT-AACAAAATTAAATAAAAGAAT
7483735 ATTAT
1 ATTAT
7483740 TTTATTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 5 0.19
27 19 0.70
28 3 0.11
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (26 bp):
ATTATAACAAAATTAAATAAAAGAAT
Found at i:7486248 original size:24 final size:24
Alignment explanation
Indices: 7486195--7486245 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
7486185 AGGATGACGC
* *
7486195 AGGGCTTGGGTTGTAAGAAGCACG
1 AGGGCTTGGGTGGTAAGAAGAACG
*
7486219 AGGGCTTGGGTGGTAAGATGAAC-
1 AGGGCTTGGGTGGTAAGAAGAACG
7486242 AGGG
1 AGGG
7486246 GCTCACTGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.25, C:0.10, G:0.45, T:0.20
Consensus pattern (24 bp):
AGGGCTTGGGTGGTAAGAAGAACG
Found at i:7489367 original size:38 final size:40
Alignment explanation
Indices: 7489316--7489391 Score: 120
Period size: 38 Copynumber: 1.9 Consensus size: 40
7489306 AGTTTGCCAC
*
7489316 AATAATTTATATTTCCAC-C-CATTTTATATAGTAGAATT
1 AATAATTGATATTTCCACTCACATTTTATATAGTAGAATT
*
7489354 AATAATTGATATTTCCACTCACTTTTTATATAGTAGAA
1 AATAATTGATATTTCCACTCACATTTTATATAGTAGAA
7489392 CTAAGTCGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 17 0.50
39 1 0.03
40 16 0.47
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (40 bp):
AATAATTGATATTTCCACTCACATTTTATATAGTAGAATT
Found at i:7493548 original size:63 final size:63
Alignment explanation
Indices: 7493449--7493573 Score: 198
Period size: 63 Copynumber: 2.0 Consensus size: 63
7493439 TGGTACTCAT
* *
7493449 CCCTAATGTGGCTAGCTTCAAAAAATGACATTTGGTAGACAAACAACCTTCCAAGTACCACAC
1 CCCTAACGTGGCTAGCTTCAAAAAATGACATATGGTAGACAAACAACCTTCCAAGTACCACAC
* *
7493512 CCCTAACGTGGCTCA-CTTCAAAAGATGACATATGGTAGACAAACAACCTTTCAAGTACCACA
1 CCCTAACGTGGCT-AGCTTCAAAAAATGACATATGGTAGACAAACAACCTTCCAAGTACCACA
7493574 TTAGCTAATA
Statistics
Matches: 57, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
63 56 0.98
64 1 0.02
ACGTcount: A:0.37, C:0.27, G:0.14, T:0.22
Consensus pattern (63 bp):
CCCTAACGTGGCTAGCTTCAAAAAATGACATATGGTAGACAAACAACCTTCCAAGTACCACAC
Found at i:7499550 original size:35 final size:35
Alignment explanation
Indices: 7499503--7499569 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
7499493 AGGTGAAGAT
7499503 ATTTAAGTAAAATTTATAAAAAAAAAATTTTAAATG
1 ATTTAAGTAAAATTT-TAAAAAAAAAATTTTAAATG
* *
7499539 ATTTAA-TAAAATTTTTAATAAAAAATTTTAA
1 ATTTAAGTAAAATTTTAAAAAAAAAATTTTAA
7499570 CTAATAGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 15 0.52
35 8 0.28
36 6 0.21
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (35 bp):
ATTTAAGTAAAATTTTAAAAAAAAAATTTTAAATG
Found at i:7500203 original size:2 final size:2
Alignment explanation
Indices: 7500196--7500248 Score: 106
Period size: 2 Copynumber: 26.5 Consensus size: 2
7500186 CTAGACCTTA
7500196 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7500238 TC TC TC TC TC T
1 TC TC TC TC TC T
7500249 TTTTGACATG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 51 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:7501607 original size:13 final size:13
Alignment explanation
Indices: 7501589--7501613 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7501579 CAATATGCTG
7501589 ATATAAAAATAAA
1 ATATAAAAATAAA
7501602 ATATAAAAATAA
1 ATATAAAAATAA
7501614 TATAATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
ATATAAAAATAAA
Found at i:7501718 original size:22 final size:20
Alignment explanation
Indices: 7501690--7501747 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 20
7501680 TTTTATATCA
*
7501690 ATATAAATTATAATATAATTTT
1 ATATAAATTATAATATAA--AT
*
7501712 ATATAAAATATAATATAAAT
1 ATATAAATTATAATATAAAT
*
7501732 ATATAAATTTTAATAT
1 ATATAAATTATAATAT
7501748 TTTACATAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 15 0.47
22 17 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATAAATTATAATATAAAT
Found at i:7501747 original size:12 final size:12
Alignment explanation
Indices: 7501689--7501737 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
7501679 TTTTTATATC
7501689 AATATAAATTAT
1 AATATAAATTAT
7501701 AATAT-AATT-T
1 AATATAAATTAT
* *
7501711 TATATAAAATAT
1 AATATAAATTAT
7501723 AATATAAATATAT
1 AATATAAAT-TAT
7501736 AA
1 AA
7501738 ATTTTAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
10 5 0.17
11 7 0.23
12 13 0.43
13 5 0.17
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AATATAAATTAT
Found at i:7502393 original size:10 final size:10
Alignment explanation
Indices: 7502380--7502560 Score: 67
Period size: 10 Copynumber: 18.6 Consensus size: 10
7502370 AAAATTTTTT
7502380 TAAAAAATTC
1 TAAAAAATTC
7502390 TAAAACAAAATT-
1 T--AA-AAAATTC
* *
7502402 TTAAAAATTT
1 TAAAAAATTC
*
7502412 TACAAAATTC
1 TAAAAAATTC
* *
7502422 AAAAAAAAT-
1 TAAAAAATTC
*
7502431 TAAAACA-T-
1 TAAAAAATTC
7502439 TAAAAAATTC
1 TAAAAAATTC
7502449 TAAAAAATT-
1 TAAAAAATTC
**
7502458 TTTAAAA-T-
1 TAAAAAATTC
7502466 TAAAAAATTC
1 TAAAAAATTC
* *
7502476 T-AAAAGTTT
1 TAAAAAATTC
*
7502485 TAAAAATTTTC
1 TAAAAA-ATTC
* *
7502496 AAAAAAAATC
1 TAAAAAATTC
* *
7502506 CAAACAAATTT
1 TAAA-AAATTC
7502517 TAAAAAATTC
1 TAAAAAATTC
* *
7502527 AAAAAAAAT-
1 TAAAAAATTC
*
7502536 T-AAAAATTT
1 TAAAAAATTC
* *
7502545 TAAAATATTG
1 TAAAAAATTC
7502555 TAAAAA
1 TAAAAA
7502561 TTTTTTGAAA
Statistics
Matches: 125, Mismatches: 33, Indels: 26
0.68 0.18 0.14
Matches are distributed among these distances:
8 19 0.15
9 26 0.21
10 57 0.46
11 14 0.11
12 3 0.02
13 6 0.05
ACGTcount: A:0.61, C:0.07, G:0.01, T:0.31
Consensus pattern (10 bp):
TAAAAAATTC
Found at i:7502463 original size:11 final size:10
Alignment explanation
Indices: 7502377--7502564 Score: 76
Period size: 9 Copynumber: 19.4 Consensus size: 10
7502367 TTTAAAATTT
7502377 TTTTAAAAAA
1 TTTTAAAAAA
*
7502387 TTCTAAAACAAAA
1 TT-T-TAA-AAAA
7502400 TTTT-AAAAA
1 TTTTAAAAAA
*
7502409 TTTTACAAAA
1 TTTTAAAAAA
*
7502419 -TTCAAAAAA
1 TTTTAAAAAA
** *
7502428 AATTAAAACA
1 TTTTAAAAAA
7502438 --TTAAAAAA
1 TTTTAAAAAA
*
7502446 TTCTAAAAAA
1 TTTTAAAAAA
*
7502456 TTTT-TAAAA
1 TTTTAAAAAA
7502465 --TTAAAAAA
1 TTTTAAAAAA
* *
7502473 TTCT-AAAAG
1 TTTTAAAAAA
7502482 TTTT-AAAAA
1 TTTTAAAAAA
7502491 TTTTCAAAAAAA
1 TTTT--AAAAAA
* **
7502503 ATCCAAACAAA
1 TTTTAAA-AAA
7502514 TTTTAAAAAA
1 TTTTAAAAAA
*
7502524 -TTCAAAAAA
1 TTTTAAAAAA
**
7502533 AATT-AAAAA
1 TTTTAAAAAA
*
7502542 TTTTAAAATA
1 TTTTAAAAAA
*
7502552 TTGT-AAAAA
1 TTTTAAAAAA
7502561 TTTT
1 TTTT
7502565 TTGAAAAAAG
Statistics
Matches: 130, Mismatches: 32, Indels: 33
0.67 0.16 0.17
Matches are distributed among these distances:
7 2 0.02
8 11 0.08
9 56 0.43
10 38 0.29
11 8 0.06
12 9 0.07
13 6 0.05
ACGTcount: A:0.59, C:0.06, G:0.01, T:0.34
Consensus pattern (10 bp):
TTTTAAAAAA
Found at i:7502467 original size:27 final size:27
Alignment explanation
Indices: 7502379--7502549 Score: 116
Period size: 28 Copynumber: 6.0 Consensus size: 27
7502369 TAAAATTTTT
7502379 TTAAAAAATTCTAAAACAAAATTTTAAAAA
1 TTAAAAAATTCT--AA-AAAATTTTAAAAA
* **
7502409 TTTTACAAAATTC-AAAAAAAATTAAAACA
1 --TTAAAAAATTCTAAAAAATTTTAAAA-A
*
7502438 TTAAAAAATTCTAAAAAATTTTTAAAA
1 TTAAAAAATTCTAAAAAATTTTAAAAA
*
7502465 TTAAAAAATTCT-AAAAGTTTTAAAAA
1 TTAAAAAATTCTAAAAAATTTTAAAAA
* *
7502491 TTTTCAAAAAAAATCCAAACAAATTTTAAAAAA
1 --TT--AAAAAATTCTAAA-AAATTTT-AAAAA
*
7502524 TTCAAAAAAAAT-T-AAAAATTTTAAAA
1 TT--AAAAAATTCTAAAAAATTTTAAAA
7502550 TATTGTAAAA
Statistics
Matches: 117, Mismatches: 13, Indels: 23
0.76 0.08 0.15
Matches are distributed among these distances:
26 12 0.10
27 27 0.23
28 30 0.26
29 5 0.04
30 8 0.07
31 14 0.12
32 16 0.14
33 5 0.04
ACGTcount: A:0.61, C:0.07, G:0.01, T:0.31
Consensus pattern (27 bp):
TTAAAAAATTCTAAAAAATTTTAAAAA
Found at i:7503563 original size:9 final size:9
Alignment explanation
Indices: 7503510--7503569 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
7503500 AATTTTTGGA
7503510 TTTATTAATT
1 TTTA-TAATT
7503520 TTCTAGTAATT
1 TT-TA-TAATT
*
7503531 TTT-TTATT
1 TTTATAATT
*
7503539 TTTAAAATT
1 TTTATAATT
* *
7503548 ATCATAATT
1 TTTATAATT
7503557 TTTATAATT
1 TTTATAATT
7503566 TTTA
1 TTTA
7503570 AAAATATTTC
Statistics
Matches: 39, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
8 7 0.18
9 20 0.51
10 3 0.08
11 9 0.23
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (9 bp):
TTTATAATT
Found at i:7503741 original size:10 final size:9
Alignment explanation
Indices: 7503717--7503910 Score: 77
Period size: 10 Copynumber: 19.6 Consensus size: 9
7503707 TAATTTCTAA
*
7503717 AAATTTTGT
1 AAATTTTTT
7503726 AGAATTGTTTT
1 A-AATT-TTTT
7503737 AAA--TTTT
1 AAATTTTTT
7503744 AAATTTTTTT
1 AAA-TTTTTT
* *
7503754 AGAAATATTTA
1 --AAATTTTTT
7503765 AAATATTTTT
1 AAAT-TTTTT
7503775 AAATTTTTT
1 AAATTTTTT
**
7503784 AAAAAAATTTT
1 --AAATTTTTT
7503795 AATATTTTTT
1 AA-ATTTTTT
*
7503805 AAAATTTTTCA
1 -AAATTTTT-T
7503816 AAATTTTTT
1 AAATTTTTT
* **
7503825 AGAAATTTGA
1 A-AATTTTTT
7503835 AAACTTTTTT
1 AAA-TTTTTT
7503845 AGAATTTTTT
1 A-AATTTTTT
*
7503855 ATAATATTTTA
1 A-AAT-TTTTT
7503866 AAATATTTTAT
1 AAAT-TTTT-T
*
7503877 AATTTTTTT
1 AAATTTTTT
*
7503886 AGAATTTTGT
1 A-AATTTTTT
7503896 AACATTTTTT
1 AA-ATTTTTT
*
7503906 GAATT
1 AAATT
7503911 GTTCTTTTTA
Statistics
Matches: 140, Mismatches: 25, Indels: 40
0.68 0.12 0.20
Matches are distributed among these distances:
7 7 0.05
9 21 0.15
10 82 0.59
11 27 0.19
12 3 0.02
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (9 bp):
AAATTTTTT
Found at i:7503782 original size:30 final size:30
Alignment explanation
Indices: 7503740--7503875 Score: 98
Period size: 30 Copynumber: 4.5 Consensus size: 30
7503730 TTGTTTTAAA
*
7503740 TTTTAAATTTTTTTAGAAATATTTAAAATAT
1 TTTTAAA-TTTTTTAGAAATATTTATAATAT
* *
7503771 TTTTAAATTTTTTAAAAAAATTT-TAATATT
1 TTTTAAATTTTTTAGAAATATTTATAATA-T
* * *
7503801 TTTTAAAATTTTTCA-AAAT-TTTTTAGAAAT
1 TTTT-AAATTTTTTAGAAATATTTATA-ATAT
** * *
7503831 TTGAAAACTTTTTTAGAATTTTTTATAATAT
1 TTTTAAA-TTTTTTAGAAATATTTATAATAT
* *
7503862 TTTAAAATATTTTA
1 TTTTAAATTTTTTA
7503876 TAATTTTTTT
Statistics
Matches: 84, Mismatches: 14, Indels: 15
0.74 0.12 0.13
Matches are distributed among these distances:
29 10 0.12
30 39 0.46
31 30 0.36
32 5 0.06
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.55
Consensus pattern (30 bp):
TTTTAAATTTTTTAGAAATATTTATAATAT
Found at i:7503807 original size:41 final size:40
Alignment explanation
Indices: 7503761--7503905 Score: 125
Period size: 41 Copynumber: 3.5 Consensus size: 40
7503751 TTTAGAAATA
7503761 TTTAAAATATTTTTAAATTTTTTAAAAAAATTTTAATATTT
1 TTTAAAAT-TTTTTAAATTTTTTAAAAAAATTTTAATATTT
* * * *
7503802 TTTAAAATTTTTCAAAATTTTTT--AGAAATTTGAAAACTTT
1 TTTAAAATTTTT-TAAATTTTTTAAAAAAATTTTAATA-TTT
* * * *
7503842 TTTAGAATTTTTTATAATATTTTAAAATATTTTATAAT-TTT
1 TTTAAAATTTTTTA-AATTTTTTAAAAAAATTT-TAATATTT
* *
7503883 TTTAGAATTTTGTAACATTTTTT
1 TTTAAAATTTTTTAA-ATTTTTT
7503906 GAATTGTTCT
Statistics
Matches: 83, Mismatches: 14, Indels: 14
0.75 0.13 0.13
Matches are distributed among these distances:
39 11 0.13
40 26 0.31
41 39 0.47
42 5 0.06
43 2 0.02
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (40 bp):
TTTAAAATTTTTTAAATTTTTTAAAAAAATTTTAATATTT
Found at i:7503903 original size:20 final size:18
Alignment explanation
Indices: 7503769--7503910 Score: 88
Period size: 20 Copynumber: 7.2 Consensus size: 18
7503759 TATTTAAAAT
*
7503769 ATTTTTAAATTTTTTAAAAA
1 ATTTTTAAATTTTTT--AGA
* *
7503789 AATTTTAATATTTTTTAAA
1 ATTTTTAA-ATTTTTTAGA
7503808 ATTTTTCAAAATTTTTTAGAA
1 ATTTTT--AAATTTTTTAG-A
**
7503829 ATTTGAAAACTTTTTTAGA
1 ATTTTTAAA-TTTTTTAGA
* *
7503848 ATTTTTTATAATATTTTAAA
1 A-TTTTTA-AATTTTTTAGA
7503868 ATATTTTATAATTTTTTTAGA
1 AT-TTTTA-AA-TTTTTTAGA
7503889 ATTTTGTAACATTTTTT-GA
1 ATTTT-TAA-ATTTTTTAGA
7503908 ATT
1 ATT
7503911 GTTCTTTTTA
Statistics
Matches: 100, Mismatches: 11, Indels: 23
0.75 0.08 0.17
Matches are distributed among these distances:
19 19 0.19
20 53 0.53
21 28 0.28
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.56
Consensus pattern (18 bp):
ATTTTTAAATTTTTTAGA
Found at i:7504808 original size:22 final size:21
Alignment explanation
Indices: 7504778--7504820 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
7504768 TAGTCCTTTG
*
7504778 TTTTTTCTTTTCATTTTTTAT
1 TTTTTTCTTTTAATTTTTTAT
7504799 TTTTATTCTTTTAATTTTTTAT
1 TTTT-TTCTTTTAATTTTTTAT
7504821 AATTTAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTTTCTTTTAATTTTTTAT
Found at i:7504925 original size:9 final size:9
Alignment explanation
Indices: 7504907--7504941 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
7504897 ATATCAAACT
7504907 TTTTTTTCC
1 TTTTTTTCC
*
7504916 TTTTTGTCC
1 TTTTTTTCC
7504925 TTTTTTTCTC
1 TTTTTTTC-C
7504935 TTTTTTT
1 TTTTTTT
7504942 TAAATATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (9 bp):
TTTTTTTCC
Found at i:7505334 original size:16 final size:16
Alignment explanation
Indices: 7505321--7505353 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7505311 TATTTTTTTG
*
7505321 TTTTTTGATCTTTTCT
1 TTTTTTAATCTTTTCT
7505337 TTTTTTAATCTTTTCT
1 TTTTTTAATCTTTTCT
7505353 T
1 T
7505354 AGTTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.12, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTTTTAATCTTTTCT
Found at i:7506647 original size:96 final size:95
Alignment explanation
Indices: 7506452--7506653 Score: 309
Period size: 95 Copynumber: 2.1 Consensus size: 95
7506442 AATATATTTT
* *
7506452 ATTTAAAAAATAATTAGTAAAATCTTCCAATAGTTTGATAAAATTTATTTTCATGTAGATCTCCT
1 ATTTATAAAATAATTAGTAAAATCTTCCAATAGTTTGATAAAATTTATTTTCATGCAGATCTCCT
*
7506517 AATAGTTTGGTAAAAAAATTTTTTAAAATT
66 AATAGTTTGGTAAAAAAATTTTTTAAAATC
7506547 ATTTATAAAATAATTAGTAAAATCTTCCAATAGTTTGATAAAATTTTATTTTCATGCAGATCTCC
1 ATTTATAAAATAATTAGTAAAATCTTCCAATAGTTTGATAAAA-TTTATTTTCATGCAGATCTCC
* * *
7506612 TAATAGTTT-G-ATAAGATTTTGTTTGAAAATC
65 TAATAGTTTGGTAAAAAAATTT-TTT-AAAATC
7506643 ATTTATAAAAT
1 ATTTATAAAAT
7506654 TTTATTTTGA
Statistics
Matches: 98, Mismatches: 6, Indels: 5
0.90 0.06 0.05
Matches are distributed among these distances:
94 7 0.07
95 46 0.47
96 45 0.46
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.43
Consensus pattern (95 bp):
ATTTATAAAATAATTAGTAAAATCTTCCAATAGTTTGATAAAATTTATTTTCATGCAGATCTCCT
AATAGTTTGGTAAAAAAATTTTTTAAAATC
Found at i:7506657 original size:63 final size:64
Alignment explanation
Indices: 7506584--7506721 Score: 208
Period size: 63 Copynumber: 2.2 Consensus size: 64
7506574 CAATAGTTTG
* *
7506584 ATAAAATTTTATTTTCATGCAGATCTC-CTAATAGTTTGATAAGATTTTGTTTGAAAATCA-TTT
1 ATAAAATTTTATTTTCATACAGATCTCTC-AATAGTTTGATAAGATTTTATTTGAAAATCATTTT
* * *
7506647 ATAAAATTTTATTTTGATACAGATCTCTCAATAGTTTGGTGAGATTTTATTTGAAAATCATTTT
1 ATAAAATTTTATTTTCATACAGATCTCTCAATAGTTTGATAAGATTTTATTTGAAAATCATTTT
7506711 ATAAAATTTTA
1 ATAAAATTTTA
7506722 CTTTGAGAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
63 53 0.78
64 15 0.22
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.46
Consensus pattern (64 bp):
ATAAAATTTTATTTTCATACAGATCTCTCAATAGTTTGATAAGATTTTATTTGAAAATCATTTT
Found at i:7508096 original size:27 final size:26
Alignment explanation
Indices: 7508048--7508099 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 26
7508038 AATCTTTTTC
7508048 TTTTTTTTTTCTTTTCATTTTTTAAGT
1 TTTTTTTTTTCTTTTCA-TTTTTAAGT
7508075 TTTTTTTCTTTCTTTTGC-TTTTTAA
1 TTTTTTT-TTTCTTTT-CATTTTTAA
7508100 ATTAGATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
27 14 0.61
28 8 0.35
29 1 0.04
ACGTcount: A:0.10, C:0.10, G:0.04, T:0.77
Consensus pattern (26 bp):
TTTTTTTTTTCTTTTCATTTTTAAGT
Found at i:7509448 original size:17 final size:16
Alignment explanation
Indices: 7509424--7509455 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
7509414 TTATCTTTTT
7509424 TTTAATTTTTTAAAAA
1 TTTAATTTTTTAAAAA
7509440 TTTATATTTTTTAAAA
1 TTTA-ATTTTTTAAAA
7509456 TGTGAGACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTTAATTTTTTAAAAA
Found at i:7509798 original size:20 final size:18
Alignment explanation
Indices: 7509770--7509812 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
7509760 ATTTTTAAGA
7509770 AATTATTAATATAAAAAAGG
1 AATTATTAA-A-AAAAAAGG
* *
7509790 AATTTTTAAAAAAAAAGT
1 AATTATTAAAAAAAAAGG
7509808 AATTA
1 AATTA
7509813 AAAATAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 11 0.55
19 1 0.05
20 8 0.40
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (18 bp):
AATTATTAAAAAAAAAGG
Found at i:7510416 original size:15 final size:15
Alignment explanation
Indices: 7510396--7510448 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
7510386 GTACCACCTT
* *
7510396 TTTTTTTGTCTTTAG
1 TTTTTTTGTTTTTAA
*
7510411 TTTTTTTTTTTTTCAA
1 TTTTTTTGTTTTT-AA
7510427 TTTTTTTGTTTTTAA
1 TTTTTTTGTTTTTAA
7510442 TTTTTTT
1 TTTTTTT
7510449 ATTTAGATAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 20 0.61
16 13 0.39
ACGTcount: A:0.09, C:0.04, G:0.06, T:0.81
Consensus pattern (15 bp):
TTTTTTTGTTTTTAA
Found at i:7511163 original size:22 final size:22
Alignment explanation
Indices: 7511138--7511188 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
7511128 TATTTTTCTT
* * *
7511138 ATTTTTTAGTTTTTTTTTTTCA
1 ATTTTTTAATTTTCTCTTTTCA
*
7511160 ATTTTTCAATTTTCTCTTTTCA
1 ATTTTTTAATTTTCTCTTTTCA
*
7511182 TTTTTTT
1 ATTTTTT
7511189 GGGGTCTTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.14, C:0.10, G:0.02, T:0.75
Consensus pattern (22 bp):
ATTTTTTAATTTTCTCTTTTCA
Found at i:7515561 original size:15 final size:17
Alignment explanation
Indices: 7515529--7515562 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
7515519 TATCAAATTT
7515529 ATCAACATTTTGTTCAA
1 ATCAACATTTTGTTCAA
7515546 ATCAAC-TTTT-TTCAA
1 ATCAACATTTTGTTCAA
7515561 AT
1 AT
7515563 TATATGTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 4 0.24
17 6 0.35
ACGTcount: A:0.35, C:0.18, G:0.03, T:0.44
Consensus pattern (17 bp):
ATCAACATTTTGTTCAA
Found at i:7516453 original size:14 final size:14
Alignment explanation
Indices: 7516406--7516455 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
7516396 TATGATAATT
7516406 AATTAATGTAAAAA
1 AATTAATGTAAAAA
* * *
7516420 AATTTAATTTGAATA
1 AA-TTAATGTAAAAA
*
7516435 CATTAATGTAAAAA
1 AATTAATGTAAAAA
7516449 AATTAAT
1 AATTAAT
7516456 TTACATTTCG
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 17 0.63
15 10 0.37
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.36
Consensus pattern (14 bp):
AATTAATGTAAAAA
Found at i:7519731 original size:18 final size:17
Alignment explanation
Indices: 7519698--7519731 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7519688 ACTTTTAGAA
*
7519698 TTTTTTTTCTATAAGTT
1 TTTTTTTTCCATAAGTT
7519715 TTTTTTTTCCATCAAGT
1 TTTTTTTTCCAT-AAGT
7519732 AATAACTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.65
Consensus pattern (17 bp):
TTTTTTTTCCATAAGTT
Found at i:7523844 original size:2 final size:2
Alignment explanation
Indices: 7523837--7523867 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7523827 AACAGTGATG
*
7523837 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7523868 ATCCCTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7527646 original size:2 final size:2
Alignment explanation
Indices: 7527639--7527663 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7527629 TTGACATGGG
7527639 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
7527664 CTAATTTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7528467 original size:3 final size:3
Alignment explanation
Indices: 7528459--7528493 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
7528449 CAAATCTCAA
7528459 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7528494 AAAGCAGCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7537195 original size:2 final size:2
Alignment explanation
Indices: 7537182--7537211 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7537172 TGTGACTAGT
*
7537182 TA TA TT TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7537212 AAACTGATCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:7551157 original size:20 final size:20
Alignment explanation
Indices: 7551132--7551179 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
7551122 CAATAATTTT
* *
7551132 AATTTTATCATTA-AGTACTC
1 AATTTTA-CATTATAATAATC
7551152 AATTTTACATTATAATAATC
1 AATTTTACATTATAATAATC
7551172 AATTTTAC
1 AATTTTAC
7551180 TTTCATTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (20 bp):
AATTTTACATTATAATAATC
Found at i:7557975 original size:18 final size:17
Alignment explanation
Indices: 7557935--7557988 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
7557925 ATTATATTAC
7557935 TTTA-TATTTATAG-TAT
1 TTTATTATTT-TAGATAT
7557951 TTTATTATTTTAGATAT
1 TTTATTATTTTAGATAT
7557968 TTTAATTATTTTTA-ATAT
1 TTT-ATTA-TTTTAGATAT
7557986 TTT
1 TTT
7557989 TCACAGCAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
16 7 0.21
17 11 0.32
18 11 0.32
19 5 0.15
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.67
Consensus pattern (17 bp):
TTTATTATTTTAGATAT
Found at i:7558292 original size:79 final size:79
Alignment explanation
Indices: 7558140--7558292 Score: 182
Period size: 79 Copynumber: 1.9 Consensus size: 79
7558130 GTGTGTGCCA
* * *
7558140 TTTCAGGACTAAACCTTGTGGAAAAGAGACAGCAAGGATTAGAAAAAGAAGAATACCATAATCCC
1 TTTCAGGACTAAACCTTGTGGAAAAGACAAAGCAAGGATCAGAAAAAGAAGAATACCATAATCCC
* **
7558205 CATTGTGTATGTCG
66 AAACGTGTATGTCG
* * * * *
7558219 TTTCAGGACTGAACTTTGTGGAACAGACAAAGCAAGGGA-CAGAAAAGGAAGAATACCATAATCT
1 TTTCAGGACTAAACCTTGTGGAAAAGACAAAGCAA-GGATCAGAAAAAGAAGAATACCATAATCC
*
7558283 GAAACGTGTA
65 CAAACGTGTA
7558293 CAAAGACTTG
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
79 58 0.95
80 3 0.05
ACGTcount: A:0.41, C:0.16, G:0.23, T:0.21
Consensus pattern (79 bp):
TTTCAGGACTAAACCTTGTGGAAAAGACAAAGCAAGGATCAGAAAAAGAAGAATACCATAATCCC
AAACGTGTATGTCG
Found at i:7558438 original size:13 final size:13
Alignment explanation
Indices: 7558420--7558446 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7558410 ATCTCGTCAT
7558420 TGAAAATATTATA
1 TGAAAATATTATA
7558433 TGAAAATATTATA
1 TGAAAATATTATA
7558446 T
1 T
7558447 ATAGAATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (13 bp):
TGAAAATATTATA
Found at i:7575360 original size:22 final size:21
Alignment explanation
Indices: 7575322--7575362 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
7575312 TATTTCAATC
*
7575322 TTTATTTTTTAATAATTAATT
1 TTTATTTTTTAACAATTAATT
7575343 TTTATTTATTTAACAATTAA
1 TTTATTT-TTTAACAATTAA
7575363 AATTGAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTATTTTTTAACAATTAATT
Found at i:7576122 original size:17 final size:17
Alignment explanation
Indices: 7576085--7576122 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7576075 TTGAAAAGAA
*
7576085 AAAATAAAGAAGAAAAT
1 AAAATAAAGAAGAAAAG
7576102 AAAATAAAGAA-AAATAG
1 AAAATAAAGAAGAAA-AG
7576119 AAAA
1 AAAA
7576123 GATCCAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 3 0.16
17 16 0.84
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.11
Consensus pattern (17 bp):
AAAATAAAGAAGAAAAG
Found at i:7583534 original size:17 final size:17
Alignment explanation
Indices: 7583512--7583547 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
7583502 ATATAATTTT
*
7583512 TTTATTTATCATATTAA
1 TTTATTAATCATATTAA
*
7583529 TTTATTAATTATATTAA
1 TTTATTAATCATATTAA
7583546 TT
1 TT
7583548 ATATCTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTATTAATCATATTAA
Found at i:7583540 original size:20 final size:20
Alignment explanation
Indices: 7583496--7583540 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7583486 GAATTAAAAT
*
7583496 ATTATCATATAATTTTTTTA
1 ATTATCATATAATTTTATTA
*
7583516 TTTATCATATTAA-TTTATTA
1 ATTATCATA-TAATTTTATTA
7583536 ATTAT
1 ATTAT
7583541 ATTAATTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTATCATATAATTTTATTA
Found at i:7583543 original size:9 final size:9
Alignment explanation
Indices: 7583522--7583551 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7583512 TTTATTTATC
7583522 ATATTAATT
1 ATATTAATT
7583531 -TATTAATT
1 ATATTAATT
7583539 ATATTAATT
1 ATATTAATT
7583548 ATAT
1 ATAT
7583552 CTTAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
ATATTAATT
Found at i:7584112 original size:18 final size:18
Alignment explanation
Indices: 7584069--7584113 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
7584059 AATAATATTT
*
7584069 TAATTATTTGGAATGAAA
1 TAATTATTTGGAATAAAA
* *
7584087 TAAATATTTGTAATAAAA
1 TAATTATTTGGAATAAAA
*
7584105 TATTTATTT
1 TAATTATTT
7584114 TCAATTAATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (18 bp):
TAATTATTTGGAATAAAA
Found at i:7584150 original size:17 final size:17
Alignment explanation
Indices: 7584128--7584165 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7584118 TTAATAAATT
*
7584128 TTATTATATTATATATA
1 TTATTATAGTATATATA
*
7584145 TTATTATCGTATATATA
1 TTATTATAGTATATATA
7584162 TTAT
1 TTAT
7584166 ATCAAGAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (17 bp):
TTATTATAGTATATATA
Found at i:7584870 original size:17 final size:17
Alignment explanation
Indices: 7584834--7584947 Score: 126
Period size: 17 Copynumber: 6.7 Consensus size: 17
7584824 AAACCCCTCC
*
7584834 CATGGTTTGC-A-AGCA
1 CATGGTTTGCAACAGAA
7584849 CATGGTTTGCAACAGAA
1 CATGGTTTGCAACAGAA
*
7584866 CATGGTTT-CGAACAGCA
1 CATGGTTTGC-AACAGAA
7584883 CATGGTTTGCAACAGAA
1 CATGGTTTGCAACAGAA
* *
7584900 CATGGTTTCGAAACAGCA
1 CATGGTTT-GCAACAGAA
* *
7584918 CATGGTTTTGTAACAAAA
1 CATGG-TTTGCAACAGAA
7584936 CATGGTTTGCAA
1 CATGGTTTGCAA
7584948 GTTGCAACAG
Statistics
Matches: 84, Mismatches: 9, Indels: 10
0.82 0.09 0.10
Matches are distributed among these distances:
15 10 0.12
16 2 0.02
17 45 0.54
18 24 0.29
19 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (17 bp):
CATGGTTTGCAACAGAA
Found at i:7584886 original size:34 final size:35
Alignment explanation
Indices: 7584845--7584943 Score: 164
Period size: 34 Copynumber: 2.8 Consensus size: 35
7584835 ATGGTTTGCA
7584845 AGCACATGGTTTGCAACAGAACATGGTTTCG-AAC
1 AGCACATGGTTTGCAACAGAACATGGTTTCGAAAC
7584879 AGCACATGGTTTGCAACAGAACATGGTTTCGAAAC
1 AGCACATGGTTTGCAACAGAACATGGTTTCGAAAC
* *
7584914 AGCACATGGTTTTGTAACAAAACATGGTTT
1 AGCACATGG-TTTGCAACAGAACATGGTTT
7584944 GCAAGTTGCA
Statistics
Matches: 61, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
34 31 0.51
35 12 0.20
36 18 0.30
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26
Consensus pattern (35 bp):
AGCACATGGTTTGCAACAGAACATGGTTTCGAAAC
Found at i:7592364 original size:19 final size:17
Alignment explanation
Indices: 7592320--7592367 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 17
7592310 TATATTAACC
7592320 AATATTTATAATATTTTA
1 AATA-TTATAATATTTTA
* *
7592338 TATTTTATACATACTTTTA
1 AATATTATA-ATA-TTTTA
7592357 AATATTATAAT
1 AATATTATAAT
7592368 TATTCACTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
17 5 0.21
18 7 0.29
19 12 0.50
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (17 bp):
AATATTATAATATTTTA
Found at i:7602396 original size:23 final size:21
Alignment explanation
Indices: 7602370--7602416 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
7602360 GAATAATTTG
*
7602370 TTTAAAAATTATGATGATTTATA
1 TTTAAAAATTAT-ATCATTT-TA
*
7602393 TTTAATAATTATATCATTTTA
1 TTTAAAAATTATATCATTTTA
7602414 TTT
1 TTT
7602417 GATAGTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 6 0.27
23 11 0.50
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.55
Consensus pattern (21 bp):
TTTAAAAATTATATCATTTTA
Found at i:7604192 original size:15 final size:15
Alignment explanation
Indices: 7604174--7604207 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7604164 TTAACTTTAT
7604174 TTTTATATTATTTTG
1 TTTTATATTATTTTG
* *
7604189 TTTTATGTTGTTTTG
1 TTTTATATTATTTTG
7604204 TTTT
1 TTTT
7604208 TTTTAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (15 bp):
TTTTATATTATTTTG
Found at i:7605326 original size:21 final size:20
Alignment explanation
Indices: 7605278--7605347 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 20
7605268 CCATCCTCAA
*
7605278 TTTTTTTTTCATTTTTTGTTC
1 TTTTTTTGT-ATTTTTTGTTC
7605299 TTTTTTTGTATTTTTTGTT-
1 TTTTTTTGTATTTTTTGTTC
*
7605318 TTGTATTTTGTATTATTCTTGTTA
1 TT-T-TTTTGTATT-TT-TTGTTC
7605342 TTTTTT
1 TTTTTT
7605348 CTTGTATTTC
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
19 2 0.05
20 11 0.26
21 17 0.40
22 5 0.12
23 6 0.14
24 2 0.05
ACGTcount: A:0.09, C:0.04, G:0.09, T:0.79
Consensus pattern (20 bp):
TTTTTTTGTATTTTTTGTTC
Found at i:7605633 original size:50 final size:50
Alignment explanation
Indices: 7605569--7605691 Score: 151
Period size: 49 Copynumber: 2.5 Consensus size: 50
7605559 AAGACTCCTA
* * * * *
7605569 TCAGCAGAGGCTCAACAACTTTAAAAATTTCATCTT-GAAAAGGGTTCCTC
1 TCAGTAGAGGCTCAATAACTTTAAAAATCTCAT-TTGGAAAAGGGCTCATC
* *
7605619 TTAGTAGAGACTCAATAACTTT-AAAATCTCATTTGGAAAAGGGCTCATC
1 TCAGTAGAGGCTCAATAACTTTAAAAATCTCATTTGGAAAAGGGCTCATC
*
7605668 TCAGTAGAGGCTCAATGACTTTAA
1 TCAGTAGAGGCTCAATAACTTTAA
7605692 CTCAATGACT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
48 2 0.03
49 40 0.66
50 19 0.31
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (50 bp):
TCAGTAGAGGCTCAATAACTTTAAAAATCTCATTTGGAAAAGGGCTCATC
Found at i:7605697 original size:14 final size:14
Alignment explanation
Indices: 7605678--7605705 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7605668 TCAGTAGAGG
7605678 CTCAATGACTTTAA
1 CTCAATGACTTTAA
7605692 CTCAATGACTTTAA
1 CTCAATGACTTTAA
7605706 AAATTCATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
CTCAATGACTTTAA
Found at i:7605752 original size:63 final size:63
Alignment explanation
Indices: 7605628--7605754 Score: 141
Period size: 63 Copynumber: 2.0 Consensus size: 63
7605618 CTTAGTAGAG
* * * **
7605628 ACTCAATAACTTTAAAATCTCATTTGGAAAAGGGCTCATCTCAGTAGAGGCTCAATGACTTTA
1 ACTCAATAACTTTAAAATCTCATTTGGAAAAAGGCTCATCTCAGCAGAGACTCAACAACTTTA
* * * *
7605691 ACTCAATGACTTTAAAAAT-TCATCTT-GAAAAAGGTTCCTCTCAGCAGAGACTTAACAACTTTA
1 ACTCAATAACTTT-AAAATCTCAT-TTGGAAAAAGGCTCATCTCAGCAGAGACTCAACAACTTTA
7605754 A
1 A
7605755 AAATTTCATG
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
63 46 0.87
64 7 0.13
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (63 bp):
ACTCAATAACTTTAAAATCTCATTTGGAAAAAGGCTCATCTCAGCAGAGACTCAACAACTTTA
Found at i:7605755 original size:49 final size:48
Alignment explanation
Indices: 7605699--7606292 Score: 600
Period size: 49 Copynumber: 12.4 Consensus size: 48
7605689 TAACTCAATG
* * *
7605699 ACTTTAAAAATTCATCTTGAAAAAGGTTCCTCTCAGCAGAGACTTAACA
1 ACTTT-AAAATTCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
* * * *
7605748 ACTTTAAAAATT--TCATGAAAAAAGCTCTTCTCAGCAGAGGCTTAACA
1 ACTTT-AAAATTCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
* * * *
7605795 ACTTTAAAATCTC-TTTTGAAAAA-ACTCCTCTTAACAGAGGCTCAACA
1 ACTTTAAAAT-TCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
* *
7605842 ACTTTAAAATTCATCTTGAAAAGGGCTCATCTCAGCAGAGGCTCAACA
1 ACTTTAAAATTCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
* * * * *
7605890 ACTTTAAAATCTCATCTTGAAAAAGGCTCATCTTAACAGAGGCTTAACG
1 ACTTTAAAAT-TCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
* * * * * * **
7605939 ACTTT-AAA---ATCTTAAAAAAAGTTCCTCTTAACAGAGGCTTAATG
1 ACTTTAAAATTCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
* *
7605983 ACTTTAAAATCTCATCTTGGAAAAAAGGCTCTTCTCAGCAGAGGCTCAATA
1 ACTTTAAAAT-TCATCTT-G-AAAAAGGCTCCTCTCAGCAGAGGCTCAACA
* * *
7606034 ACTTTAAAAATTCATCTTGAAAAAGGTTCCTCTTAGTAGAGGCTCAACA
1 ACTTT-AAAATTCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
* * *
7606083 ACTTTAAAAATT--TCATGAAAAAAGCTCCTCTCAACAGAGGCTCAACA
1 ACTTT-AAAATTCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
* *
7606130 ACTTTAAAAAATTCATCTTGAAAAAGGCTCATCTCAACAGAGGCTCAACA
1 ACTTT--AAAATTCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
* * * *
7606180 ACTTTAAAAATTCATCTTGAAAAGGGCTCCTCTTAGCAAAGGCTTAACA
1 ACTTT-AAAATTCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
* * *
7606229 ACTTTAAAA-TC-TCATGAAAATGGCTCCTCTCAGCAGAGACTCAACA
1 ACTTTAAAATTCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
7606275 ACTTTAAAATCTCATCTT
1 ACTTTAAAAT-TCATCTT
7606293 TTCTCAAAAC
Statistics
Matches: 463, Mismatches: 63, Indels: 38
0.82 0.11 0.07
Matches are distributed among these distances:
44 36 0.08
45 3 0.01
46 45 0.10
47 109 0.24
48 54 0.12
49 138 0.30
50 38 0.08
51 35 0.08
52 5 0.01
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (48 bp):
ACTTTAAAATTCATCTTGAAAAAGGCTCCTCTCAGCAGAGGCTCAACA
Found at i:7606019 original size:144 final size:142
Alignment explanation
Indices: 7605699--7606292 Score: 700
Period size: 144 Copynumber: 4.1 Consensus size: 142
7605689 TAACTCAATG
* * * *
7605699 ACTTTAAAAATTCATCTTGAAAAAGGTTCCTCTCAGCAGAGACTTAACAACTTTAAAAATT--TC
1 ACTTTAAAAATTCATCTTGAAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTCATC
* * * * *
7605762 ATGAAAAAAGCTCTTCTCAGCAGAGGCTTAACAACTTTAAAATCTCTTTTGAAAAAA-CTCCTCT
66 TTGAAAAAGGCTCCTCTTAGCAGAGGCTTAACAACTTTAAAA--TC--TTAAAAAAAGCTCCTCT
7605826 TAACAGAGGCTCAACA
127 TAACAGAGGCTCAACA
*
7605842 ACTTT-AAAATTCATCTTGAAAAGGGCTCATCTCAGCAGAGGCTCAACAACTTT-AAAATCTCAT
1 ACTTTAAAAATTCATCTTGAAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAAT-TCAT
* * * *
7605905 CTTGAAAAAGGCTCATCTTAACAGAGGCTTAACGACTTTAAAATCTTAAAAAAAGTTCCTCTTAA
65 CTTGAAAAAGGCTCCTCTTAGCAGAGGCTTAACAACTTTAAAATCTTAAAAAAAGCTCCTCTTAA
* **
7605970 CAGAGGCTTAATG
130 CAGAGGCTCAACA
* *
7605983 ACTTT-AAAATCTCATCTTGGAAAAAAGGCTCTTCTCAGCAGAGGCTCAATAACTTTAAAAATTC
1 ACTTTAAAAAT-TCATCTT-G-AAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTC
* * *
7606047 ATCTTGAAAAAGGTTCCTCTTAGTAGAGGCTCAACAACTTTAAAAAT-TTCATGAAAAAAGCTCC
63 ATCTTGAAAAAGGCTCCTCTTAGCAGAGGCTTAACAACTTT-AAAATCTT-A--AAAAAAGCTCC
*
7606111 TCTCAACAGAGGCTCAACA
124 TCTTAACAGAGGCTCAACA
*
7606130 ACTTTAAAAAATTCATCTTGAAAAAGGCTCATCTCAACAGAGGCTCAACAACTTTAAAAATTCAT
1 ACTTT-AAAAATTCATCTTGAAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTCAT
* * * ** *
7606195 CTTGAAAAGGGCTCCTCTTAGCAAAGGCTTAACAACTTTAAAATCTCATGAAAATGGCTCCTCTC
65 CTTGAAAAAGGCTCCTCTTAGCAGAGGCTTAACAACTTTAAAATCT--TAAAAAAAGCTCCTCTT
* *
7606260 AGCAGAGACTCAACA
128 AACAGAGGCTCAACA
7606275 ACTTT-AAAATCTCATCTT
1 ACTTTAAAAAT-TCATCTT
7606293 TTCTCAAAAC
Statistics
Matches: 390, Mismatches: 43, Indels: 35
0.83 0.09 0.07
Matches are distributed among these distances:
140 8 0.02
141 34 0.09
142 53 0.14
143 11 0.03
144 116 0.30
145 47 0.12
146 77 0.20
147 31 0.08
148 8 0.02
149 5 0.01
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.28
Consensus pattern (142 bp):
ACTTTAAAAATTCATCTTGAAAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTCATC
TTGAAAAAGGCTCCTCTTAGCAGAGGCTTAACAACTTTAAAATCTTAAAAAAAGCTCCTCTTAAC
AGAGGCTCAACA
Found at i:7606091 original size:241 final size:237
Alignment explanation
Indices: 7605741--7606292 Score: 679
Period size: 241 Copynumber: 2.3 Consensus size: 237
7605731 TCAGCAGAGA
* *
7605741 CTTAACAACTTTAAAAATTTCATGAAAAAA-GCTCTTCTCAGCAGAGGCTTAACAACTTTAAAAT
1 CTTAACAACTTT-AAAATCTCATGAAAAAAGGCTCTTCTCAGCAGAGGCTCAACAACTTTAAAAT
* * **
7605805 CTC-TTTTGAAAAAACTCCTCTTAACAGAGGCTCAACAACTTT-AAAATTCATCTTGAAAAGGGC
65 CTCATCTTGAAAAAACTCCTCTTAACAGAGGCTCAACAACTTTAAAAATT--TCATGAAAAAAGC
* *
7605868 TCATCTCAGCAGAGGCTCAACAACTTT-AAAATCTCATCTTGAAAAAGGCTCATCTTAACAGAGG
128 TCATCTCAACAGAGGCTCAACAACTTTAAAAAT-TCATCTTGAAAAAGGCTCATCTCAACAGAGG
* * * *
7605932 CTTAACGACTTT-AAA-ATCTTAAAAAAAGTTCCTCTTAACAGAGG
192 CTCAACAACTTTAAAATATCTTAAAAAAAGCTCCTCTTAACAAAGG
** *
7605976 CTTAATGACTTTAAAATCTCATCTTGGAAAAAAGGCTCTTCTCAGCAGAGGCTCAATAACTTTAA
1 CTTAACAACTTTAAAATCTCA---T-GAAAAAAGGCTCTTCTCAGCAGAGGCTCAACAACTTT-A
** **
7606041 AAAT-TCATCTTGAAAAAGGTTCCTCTTAGTAGAGGCTCAACAACTTTAAAAATTTCATGAAAAA
61 AAATCTCATCTTGAAAAA-ACTCCTCTTAACAGAGGCTCAACAACTTTAAAAATTTCATGAAAAA
*
7606105 AGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAAATTCATCTTGAAAAAGGCTCATCTCAACAG
125 AGCTCATCTCAACAGAGGCTCAACAACTTT-AAAAATTCATCTTGAAAAAGGCTCATCTCAACAG
* ** *
7606170 AGGCTCAACAACTTTAAAAATTCATCTTGAAAAGGGCTCCTCTTAGCAAAGG
189 AGGCTCAACAACTTT-AAAA-T-ATCTTAAAAAAAGCTCCTCTTAACAAAGG
* * *
7606222 CTTAACAACTTTAAAATCTCATG-AAAATGGCTCCTCTCAGCAGAGACTCAACAACTTTAAAATC
1 CTTAACAACTTTAAAATCTCATGAAAAAAGGCTCTTCTCAGCAGAGGCTCAACAACTTTAAAATC
7606286 TCATCTT
66 TCATCTT
7606293 TTCTCAAAAC
Statistics
Matches: 270, Mismatches: 30, Indels: 28
0.82 0.09 0.09
Matches are distributed among these distances:
234 8 0.03
235 10 0.04
237 1 0.00
238 7 0.03
239 29 0.11
240 54 0.20
241 103 0.38
242 12 0.04
243 4 0.01
246 42 0.16
ACGTcount: A:0.38, C:0.21, G:0.12, T:0.28
Consensus pattern (237 bp):
CTTAACAACTTTAAAATCTCATGAAAAAAGGCTCTTCTCAGCAGAGGCTCAACAACTTTAAAATC
TCATCTTGAAAAAACTCCTCTTAACAGAGGCTCAACAACTTTAAAAATTTCATGAAAAAAGCTCA
TCTCAACAGAGGCTCAACAACTTTAAAAATTCATCTTGAAAAAGGCTCATCTCAACAGAGGCTCA
ACAACTTTAAAATATCTTAAAAAAAGCTCCTCTTAACAAAGG
Done.