Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 40 of 100
Found at i:7612045 original size:22 final size:20
Alignment explanation
Indices: 7612007--7612057 Score: 57
Period size: 22 Copynumber: 2.5 Consensus size: 20
7611997 TATATTAATC
* **
7612007 AATTTTTATTTATTATTTTA
1 AATTTTTTTTTATTATTGAA
7612027 AATTTTTTTTTATTGTATTGAA
1 AATTTTTTTTTA-T-TATTGAA
7612049 AATTTTTTT
1 AATTTTTTT
7612058 ATAAATACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 11 0.42
21 1 0.04
22 14 0.54
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (20 bp):
AATTTTTTTTTATTATTGAA
Found at i:7612720 original size:49 final size:48
Alignment explanation
Indices: 7612631--7612849 Score: 241
Period size: 49 Copynumber: 4.5 Consensus size: 48
7612621 AAGACTCATA
* * *
7612631 TCAGTAGAGGCTCAACAACTTTAAAAATTTCATCT-AGAAAAGGGTTCCTC
1 TCAGCAGAGGCTCAACAACTTT-AAAATCTCATTTGA-AAAAGGGTT-CTC
* *
7612681 TCAGCAGAGGCTTAACAACTTTAAAATCTCATTTGGAAAAGGGCTTCTC
1 TCAGCAGAGGCTCAACAACTTTAAAATCTCATTTGAAAAAGGG-TTCTC
* * *
7612730 TCAGCAGAGGCTCAACGACTTTAAAA--TC--TTGAAAAATGCTTCTC
1 TCAGCAGAGGCTCAACAACTTTAAAATCTCATTTGAAAAAGGGTTCTC
* * * *
7612774 TCAGCATAGGCTTAACGACTTTAAAATCTCATCTTGAAAAAAGGTTCCTC
1 TCAGCAGAGGCTCAACAACTTTAAAATCTCAT-TTGAAAAAGGGTT-CTC
7612824 TCAGCAGAGGCTCAACAACTTTAAAA
1 TCAGCAGAGGCTCAACAACTTTAAAA
7612850 ATTCATCTTG
Statistics
Matches: 144, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
44 29 0.20
45 8 0.06
46 2 0.01
47 2 0.01
49 55 0.38
50 48 0.33
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (48 bp):
TCAGCAGAGGCTCAACAACTTTAAAATCTCATTTGAAAAAGGGTTCTC
Found at i:7612785 original size:93 final size:94
Alignment explanation
Indices: 7612678--7612849 Score: 276
Period size: 94 Copynumber: 1.8 Consensus size: 94
7612668 AAAAGGGTTC
* *
7612678 CTCTCAGCAGAGGCTTAACAACTTTAAAATCTCAT-TTGGAAAAGGGCTT-CTCTCAGCAGAGGC
1 CTCTCAGCAGAGGCTTAACAACTTTAAAATCTCATCTTGAAAAAAGG-TTCCTCTCAGCAGAGGC
*
7612741 TCAACGACTTTAAAATCTTGAAAAATGCTT
65 TCAACAACTTTAAAATCTTGAAAAATGCTT
* *
7612771 CTCTCAGCATAGGCTTAACGACTTTAAAATCTCATCTTGAAAAAAGGTTCCTCTCAGCAGAGGCT
1 CTCTCAGCAGAGGCTTAACAACTTTAAAATCTCATCTTGAAAAAAGGTTCCTCTCAGCAGAGGCT
7612836 CAACAACTTTAAAA
66 CAACAACTTTAAAA
7612850 ATTCATCTTG
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
93 35 0.49
94 37 0.51
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.27
Consensus pattern (94 bp):
CTCTCAGCAGAGGCTTAACAACTTTAAAATCTCATCTTGAAAAAAGGTTCCTCTCAGCAGAGGCT
CAACAACTTTAAAATCTTGAAAAATGCTT
Found at i:7612858 original size:50 final size:48
Alignment explanation
Indices: 7612631--7612860 Score: 247
Period size: 50 Copynumber: 4.8 Consensus size: 48
7612621 AAGACTCATA
* *
7612631 TCAGTAGAGGCTCAACAACTTTAAAAATTTCATCTAG-AAAAGGGTTCCTC
1 TCAGCAGAGGCTCAACAACTTT-AAAA-TTCATCTTGAAAAAGGGTT-CTC
* *
7612681 TCAGCAGAGGCTTAACAACTTTAAAATCTCAT-TTGGAAAAGGGCTTCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAT-TCATCTTGAAAAAGGG-TTCTC
* * *
7612730 TCAGCAGAGGCTCAACGACTTT-AAA---ATCTTGAAAAATGCTTCTC
1 TCAGCAGAGGCTCAACAACTTTAAAATTCATCTTGAAAAAGGGTTCTC
* * * *
7612774 TCAGCATAGGCTTAACGACTTTAAAATCTCATCTTGAAAAAAGGTTCCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAT-TCATCTTGAAAAAGGGTT-CTC
7612824 TCAGCAGAGGCTCAACAACTTTAAAAATTCATCTTGA
1 TCAGCAGAGGCTCAACAACTTT-AAAATTCATCTTGA
7612861 TGCATGTACT
Statistics
Matches: 154, Mismatches: 15, Indels: 22
0.81 0.08 0.12
Matches are distributed among these distances:
44 27 0.18
45 11 0.07
48 6 0.04
49 52 0.34
50 53 0.34
51 5 0.03
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (48 bp):
TCAGCAGAGGCTCAACAACTTTAAAATTCATCTTGAAAAAGGGTTCTC
Found at i:7625006 original size:22 final size:25
Alignment explanation
Indices: 7624948--7625006 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 25
7624938 ATTATTATTT
*
7624948 TTAAATATATCTTATAATTTTTATA
1 TTAAATATATATTATAATTTTTATA
*
7624973 TT-TATATCATATT-T-A-TTTTATA
1 TTAAATAT-ATATTATAATTTTTATA
7624995 TTAAATATATAT
1 TTAAATATATAT
7625007 AAAATATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
22 13 0.45
23 5 0.17
24 5 0.17
25 6 0.21
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (25 bp):
TTAAATATATATTATAATTTTTATA
Found at i:7629108 original size:20 final size:20
Alignment explanation
Indices: 7629083--7629122 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7629073 AAGCGTAAAT
7629083 GAGCATTTAACTTGATAATC
1 GAGCATTTAACTTGATAATC
*
7629103 GAGCATTTGACTTGATAATC
1 GAGCATTTAACTTGATAATC
7629123 ATATGCATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (20 bp):
GAGCATTTAACTTGATAATC
Found at i:7644511 original size:37 final size:35
Alignment explanation
Indices: 7644465--7644695 Score: 128
Period size: 36 Copynumber: 6.3 Consensus size: 35
7644455 ACTGATTTTT
*
7644465 ATTATTTGTTCTCTTCTTTTTTTAAAGAGATACTCTC
1 ATTACTTGTTCTCTTCTTTTTTTAAA-A-ATACTCTC
* * *
7644502 ATTACTTGTTCTTTTATTTTTTTGAAAAATATTCAT-
1 ATTACTTGTTCTCTTCTTTTTTT-AAAAATACTC-TC
* *
7644538 ATTACTTGTTTTCTCCTTTTTTTTAGAGAAATACTAC-C
1 ATTACTTGTTCTCTTC-TTTTTTTA-A-AAATACT-CTC
* * * * *
7644576 ATTATTTATTCCCTT-ATTTTTTAGGAAAACACTCTC
1 ATTACTTGTTCTCTTCTTTTTTTA--AAAATACTCTC
* * *
7644612 ATTACTTGTTTTCTTTTTTTTTTTTATAAAATATTCAT-
1 ATTACTTG--TTCTCTTCTTTTTTTA-AAAATACTC-TC
* * * * *
7644650 ATTACTTGTTCTCCTATTTTTTGGAGAAATACTATC
1 ATTACTTGTTCTCTTCTTTTTT-TAAAAATACTCTC
7644686 ATTACTTGTT
1 ATTACTTGTT
7644696 ATTCTAATTT
Statistics
Matches: 148, Mismatches: 31, Indels: 31
0.70 0.15 0.15
Matches are distributed among these distances:
35 2 0.01
36 65 0.44
37 33 0.22
38 39 0.26
39 9 0.06
ACGTcount: A:0.25, C:0.14, G:0.07, T:0.54
Consensus pattern (35 bp):
ATTACTTGTTCTCTTCTTTTTTTAAAAATACTCTC
Found at i:7644579 original size:74 final size:75
Alignment explanation
Indices: 7644465--7644700 Score: 214
Period size: 74 Copynumber: 3.2 Consensus size: 75
7644455 ACTGATTTTT
* * * * * *
7644465 ATTATTTGTTCTCTTC-TTTTTTTAAAGAGATACTCTCATTACTTGTTCTTTTATTTTTTTGAAA
1 ATTACTTGTTTTCTTCTTTTTTTTAAAGAAATACTCACATTACTTGTTCTCTTATTTTTTAGAAA
*
7644529 AATATTCAT-
66 AATACTCATC
* * * * * *
7644538 ATTACTTGTTTTCTCCTTTTTTTTAGAGAAATACT-ACCATTATTTATTCCCTTATTTTTTAGGA
1 ATTACTTGTTTTCTTCTTTTTTTTAAAGAAATACTCA-CATTACTTGTTCTCTTATTTTTTAGAA
*
7644602 AAACACTC-TC
65 AAATACTCATC
* * * * * * *
7644612 ATTACTTGTTTTCTTTTTTTTTTTTATA-AAATATTCATATTACTTGTTCTCCTATTTTTTGGAG
1 ATTACTTGTTTTC-TTCTTTTTTTTAAAGAAATACTCACATTACTTGTTCTCTTATTTTTTAGAA
7644676 AAATACT-ATC
65 AAATACTCATC
7644686 ATTACTTGTTATTCT
1 ATTACTTGTT-TTCT
7644701 AATTTTTAGG
Statistics
Matches: 129, Mismatches: 27, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
73 14 0.11
74 100 0.78
75 15 0.12
ACGTcount: A:0.25, C:0.14, G:0.07, T:0.54
Consensus pattern (75 bp):
ATTACTTGTTTTCTTCTTTTTTTTAAAGAAATACTCACATTACTTGTTCTCTTATTTTTTAGAAA
AATACTCATC
Found at i:7644707 original size:74 final size:73
Alignment explanation
Indices: 7644481--7644817 Score: 187
Period size: 74 Copynumber: 4.6 Consensus size: 73
7644471 TGTTCTCTTC
* * ** * *
7644481 TTTTTTTAAAGAGATACT-CTCATTACTTGTTCTTTTATTTTTTTGAAAAATATTCAT-ATTACT
1 TTTTTTTAGAGAAATACTAC-CATTACTTGTTCTCCTA-TTTTTTGGAAAATACT-ATCATTACT
**
7644544 TGTTTTCTCCT
63 TGTTTTCTAAT
* * * *
7644555 TTTTTTTAGAGAAATACTACCATTATTTATTC-CCTTATTTTTTAGGAAAACACTCTCATTACTT
1 TTTTTTTAGAGAAATACTACCATTACTTGTTCTCC-TATTTTTT-GGAAAATACTATCATTACTT
**
7644619 GTTTTCTTTTT
64 GTTTTC-TAAT
* * *
7644630 TTTTTTTATA-AAATA-TTCATATTACTTGTTCTCCTATTTTTTGGAGAAATACTATCATTACTT
1 TTTTTTTAGAGAAATACTAC-CATTACTTGTTCTCCTATTTTTTGGA-AAATACTATCATTACTT
7644693 GTTATTCTAA-
64 GTT-TTCTAAT
* * * *
7644703 --TTTTTAG-GAAAATA-TTCGCATTACTTATTCTCATATTTTCTTAAGG-GAA-AC-AGTCATT
1 TTTTTTTAGAG-AAATACTAC-CATTACTTGTTCTCCTATTTT-TT--GGAAAATACTA-TCATT
* * *
7644761 ATTTGTTGTCTTAT
60 ACTTGTTTTCTAAT
* * * * *
7644775 TTTTTTTAGGGAAACACTCCCATTACTTATTCTCCTTTTTTTT
1 TTTTTTTAGAGAAATACTACCATTACTTGTTCTCCTATTTTTT
7644818 TTTTAAGAAA
Statistics
Matches: 209, Mismatches: 34, Indels: 41
0.74 0.12 0.14
Matches are distributed among these distances:
71 11 0.05
72 39 0.19
73 18 0.09
74 119 0.57
75 22 0.11
ACGTcount: A:0.26, C:0.15, G:0.08, T:0.52
Consensus pattern (73 bp):
TTTTTTTAGAGAAATACTACCATTACTTGTTCTCCTATTTTTTGGAAAATACTATCATTACTTGT
TTTCTAAT
Found at i:7644707 original size:110 final size:108
Alignment explanation
Indices: 7644496--7644733 Score: 295
Period size: 110 Copynumber: 2.2 Consensus size: 108
7644486 TTAAAGAGAT
*
7644496 ACTCTCATTACTTGTTCTTTTATTTTTTTGAAAAATATTCATATTACTTGTTTTCTCCTTTTTTT
1 ACTCTCATTACTTGTTCTTTTATTTTTTTGAAAAATATTCATATTACTTG-TTTCTCCTATTTTT
*
7644561 TAGAGAAATACTACCATTATTTATTCCCTTATTTTTTAGGAAAAC
65 TAGAGAAATACTACCATTATTTATT-CCTTAATTTTTAGGAAAAC
*
7644606 ACTCTCATTACTTGTTTTCTTTT-TTTTTTTTATAAAATATTCATATTACTTG-TTCTCCTATTT
1 ACTCTCATTACTTG--TTCTTTTATTTTTTTGA-AAAATATTCATATTACTTGTTTCTCCTATTT
* * *
7644669 TTTGGAGAAATACTATCATTACTTGTTATT-C-TAATTTTTAGGAAAAT
63 TTTAGAGAAATACTACCATTA--T-TTATTCCTTAATTTTTAGGAAAAC
* * *
7644716 ATTCGCATTACTTATTCT
1 ACTCTCATTACTTGTTCT
7644734 CATATTTTCT
Statistics
Matches: 113, Mismatches: 9, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
108 4 0.04
110 68 0.60
111 9 0.08
112 27 0.24
113 5 0.04
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.53
Consensus pattern (108 bp):
ACTCTCATTACTTGTTCTTTTATTTTTTTGAAAAATATTCATATTACTTGTTTCTCCTATTTTTT
AGAGAAATACTACCATTATTTATTCCTTAATTTTTAGGAAAAC
Found at i:7644814 original size:36 final size:36
Alignment explanation
Indices: 7644548--7644862 Score: 109
Period size: 36 Copynumber: 8.5 Consensus size: 36
7644538 ATTACTTGTT
* * *
7644548 TTCTCCTTTTTTTTAGAGAAATACTACCATTATTTA
1 TTCTCCTTTTTTTTAGGGAAATACTCCCATTACTTA
* * * *
7644584 TTC-CCTTATTTTTTAGGAAAACACTCTCATTACTTGTT
1 TTCTCCTT-TTTTTTAGGGAAATACTCCCATTAC-T-TA
** ** * ** *
7644622 TTCTTTTTTTTTTTTA-TAAAATATTCATATTACTTG
1 TTC-TCCTTTTTTTTAGGGAAATACTCCCATTACTTA
* ** *
7644658 TTCTCCTATTTTTT-GGAGAAATACTATCATTACTTG
1 TTCTCCTTTTTTTTAGG-GAAATACTCCCATTACTTA
* * ** * * *
7644694 TTATTCTAATTTTTAGGAAAATATTCGCATTACTTA
1 TTCTCCTTTTTTTTAGGGAAATACTCCCATTACTTA
* * * * * *
7644730 TTCTCATATTTTCTTAAGGGAAACAGT--CATTATTTGT
1 TTCTCCT-TTTT-TTTAGGGAAATACTCCCATTACTT-A
** *
7644767 TGTCTTATTTTTTTTAGGGAAACACTCCCATTACTTA
1 T-TCTCCTTTTTTTTAGGGAAATACTCCCATTACTTA
* * *
7644804 TTCTCCTTTTTTTTTTTTAAGAAAATACTCCCATTACTTG
1 TTCTCC----TTTTTTTTAGGGAAATACTCCCATTACTTA
*
7644844 TTATCCTATTTTCTTTAGG
1 TTCTCCT-TTTT-TTTAGG
7644863 AAAACAATTT
Statistics
Matches: 203, Mismatches: 56, Indels: 38
0.68 0.19 0.13
Matches are distributed among these distances:
35 12 0.06
36 92 0.45
37 16 0.08
38 43 0.21
39 7 0.03
40 33 0.16
ACGTcount: A:0.25, C:0.16, G:0.08, T:0.50
Consensus pattern (36 bp):
TTCTCCTTTTTTTTAGGGAAATACTCCCATTACTTA
Found at i:7645668 original size:13 final size:13
Alignment explanation
Indices: 7645650--7645674 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7645640 TTTTTTTTTT
7645650 TTTGTTGAGTTTG
1 TTTGTTGAGTTTG
7645663 TTTGTTGAGTTT
1 TTTGTTGAGTTT
7645675 AGGATTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.28, T:0.64
Consensus pattern (13 bp):
TTTGTTGAGTTTG
Found at i:7645810 original size:27 final size:26
Alignment explanation
Indices: 7645779--7645834 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 26
7645769 GGGTTTTGGT
*
7645779 TTTATGTTTATTGAAATTTTTGTTAGG
1 TTTATGTTTATTGAAATTTGT-TTAGG
*
7645806 TTTATGTTTGTTGAAATTTGTTTAGG
1 TTTATGTTTATTGAAATTTGTTTAGG
7645832 TTT
1 TTT
7645835 TGGTTATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 8 0.30
27 19 0.70
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.61
Consensus pattern (26 bp):
TTTATGTTTATTGAAATTTGTTTAGG
Found at i:7645821 original size:60 final size:60
Alignment explanation
Indices: 7645735--7645857 Score: 158
Period size: 60 Copynumber: 2.0 Consensus size: 60
7645725 ATATGTTGAG
* * * *
7645735 TTTTTGTTAGTTAATTATTTGATGAAATTTATTTGGGTTTTGGTTTTATGTTTATTGAAA
1 TTTTTGTTAGTTAATTATTTGATGAAATTTATTTAGGTTTTGGTTATATATTTATTAAAA
* * * *
7645795 TTTTTGTTAGGTTTA-TGTTTGTTGAAATTTGTTTAGGTTTTGGTTATATATTTATTAAAA
1 TTTTTGTTA-GTTAATTATTTGATGAAATTTATTTAGGTTTTGGTTATATATTTATTAAAA
7645855 TTT
1 TTT
7645858 GTTGGTGATA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
60 50 0.93
61 4 0.07
ACGTcount: A:0.23, C:0.00, G:0.18, T:0.59
Consensus pattern (60 bp):
TTTTTGTTAGTTAATTATTTGATGAAATTTATTTAGGTTTTGGTTATATATTTATTAAAA
Found at i:7646624 original size:335 final size:338
Alignment explanation
Indices: 7646010--7646661 Score: 1061
Period size: 335 Copynumber: 1.9 Consensus size: 338
7646000 TTGGGTTTTG
* * *
7646010 TTATATATTTATTAACTTTCAGATATGTAAGATTTAGGGTTGGTTAATTTGGGGTTTTAGTGCAT
1 TTATATATTTATTAACTTTCAGATATGTAAGATTTAGGATTGGTTAATTTGGCGTTTGAGTGCAT
7646075 TAATATTTATATATATATTTGTATGGATGTTTTATATTTAATATTTTCTAGATTTTAATAATAAT
66 TAATA-TTATATATATATTTGTATGGATGTTTTATATTTAATATTTTCTAGATTTTAATAATAAT
* * * * *
7646140 TATGGAAATTAAAATTATTTATATTGATTTGAGGTTATAATTTATATATATCACTAATAGCTATA
130 TATGAAAAATAAAATTATTCATATTGATTTGAGGTTATAACTTATATATATCACTAATAGCCATA
7646205 TGATTTTGAAGTAAGTTATATATTATTAAGATTTATATTTGTTTTGAAATAATTTATATATTTGA
195 TGATTTTGAAGTAAGTTATATATTATTAAGATTTATATTTGTTTTGAAATAATTTATATATTTGA
*
7646270 TAGTTTAGTGAAATTTATATATTACTAATTATTAAAATATTGTGGTTTGATTGTATTGATCAAAC
260 TAGTTTAGTGAAATTTATATATTACTAATTATTAAAATATTGTGGTTTGATTATATTGATCAAAC
7646335 TTAATATAAATAAA
325 TTAATATAAATAAA
* * *
7646349 TTATATATTTATTAACTTTTAGATGTGTAAGATTTAGGATTGGTTAATTT-GCGTTTGATGTGTA
1 TTATATATTTATTAACTTTCAGATATGTAAGATTTAGGATTGGTTAATTTGGCGTTTGA-GTGCA
7646413 TTAATA-T-T-TATATATTTGTATGGATGTTTTATATTTAATATTTTCTAGATTTTAATAATAAT
65 TTAATATTATATATATATTTGTATGGATGTTTTATATTTAATATTTTCTAGATTTTAATAATAAT
7646475 TAT-AAAAATAAAATTTATTCATATTGATTTGAGGTTATAACTTATATAT-T-ACTAATAGCCA-
130 TATGAAAAATAAAA-TTATTCATATTGATTTGAGGTTATAACTTATATATATCACTAATAGCCAT
7646536 ATGATCCTTTTGAAGTAAGTTATATATTATTAAGATTTATATTTGTTTTGAAA-AAGTTTATATA
194 ATGA---TTTTGAAGTAAGTTATATATTATTAAGATTTATATTTGTTTTGAAATAA-TTTATATA
*
7646600 TTTGATAGTTTAGTGAAATTTATATATTACTAATTATTGAAATATTGTGGTTTGATTATATT
255 TTTGATAGTTTAGTGAAATTTATATATTACTAATTATTAAAATATTGTGGTTTGATTATATT
7646662 CGATGTTCAC
Statistics
Matches: 294, Mismatches: 13, Indels: 16
0.91 0.04 0.05
Matches are distributed among these distances:
332 4 0.01
333 10 0.03
334 11 0.04
335 204 0.69
336 1 0.00
337 1 0.00
338 6 0.02
339 57 0.19
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.49
Consensus pattern (338 bp):
TTATATATTTATTAACTTTCAGATATGTAAGATTTAGGATTGGTTAATTTGGCGTTTGAGTGCAT
TAATATTATATATATATTTGTATGGATGTTTTATATTTAATATTTTCTAGATTTTAATAATAATT
ATGAAAAATAAAATTATTCATATTGATTTGAGGTTATAACTTATATATATCACTAATAGCCATAT
GATTTTGAAGTAAGTTATATATTATTAAGATTTATATTTGTTTTGAAATAATTTATATATTTGAT
AGTTTAGTGAAATTTATATATTACTAATTATTAAAATATTGTGGTTTGATTATATTGATCAAACT
TAATATAAATAAA
Found at i:7648077 original size:19 final size:19
Alignment explanation
Indices: 7648053--7648148 Score: 81
Period size: 19 Copynumber: 5.0 Consensus size: 19
7648043 TGAATAACAC
7648053 TGATAACACTAATATACAT
1 TGATAACACTAATATACAT
*
7648072 TGATAAACACGAATA-ACAT
1 TGAT-AACACTAATATACAT
* * *
7648091 TGATATGCACGAATA-ACAC
1 TGATA-ACACTAATATACAT
* *
7648110 CGATACACACTGATATACA-
1 TGATA-ACACTAATATACAT
7648129 TGAATAACACTAATATACAT
1 TG-ATAACACTAATATACAT
7648149 GAATAGATAG
Statistics
Matches: 62, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
18 1 0.02
19 46 0.74
20 15 0.24
ACGTcount: A:0.47, C:0.19, G:0.09, T:0.25
Consensus pattern (19 bp):
TGATAACACTAATATACAT
Found at i:7648106 original size:29 final size:29
Alignment explanation
Indices: 7648077--7648148 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
7648067 TACATTGATA
*
7648077 AACACGAATA-ACATTGATATGCACGAAT
1 AACACGAATACACATTGATATACACGAAT
* *
7648105 AACACCG-ATACACACTGATATACATGAAT
1 AACA-CGAATACACATTGATATACACGAAT
* *
7648134 AACACTAATATACAT
1 AACACGAATACACAT
7648149 GAATAGATAG
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
28 8 0.23
29 27 0.77
ACGTcount: A:0.47, C:0.21, G:0.10, T:0.22
Consensus pattern (29 bp):
AACACGAATACACATTGATATACACGAAT
Found at i:7648166 original size:21 final size:19
Alignment explanation
Indices: 7648116--7648153 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7648106 ACACCGATAC
*
7648116 ACACTGATATACATGAATA
1 ACACTAATATACATGAATA
7648135 ACACTAATATACATGAATA
1 ACACTAATATACATGAATA
7648154 GATAGTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.16, G:0.08, T:0.26
Consensus pattern (19 bp):
ACACTAATATACATGAATA
Found at i:7649932 original size:16 final size:17
Alignment explanation
Indices: 7649874--7649935 Score: 74
Period size: 17 Copynumber: 3.7 Consensus size: 17
7649864 AAAATTATGC
7649874 TTAAAGTTGTGAATTGT
1 TTAAAGTTGTGAATTGT
* *
7649891 TTGAAA-TTTTTAATTGT
1 TT-AAAGTTGTGAATTGT
7649908 TTAAAGTTGTGAATT-T
1 TTAAAGTTGTGAATTGT
*
7649924 TTTAAGTTGTGA
1 TTAAAGTTGTGA
7649936 TATTTTAGTG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
16 15 0.39
17 20 0.53
18 3 0.08
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.52
Consensus pattern (17 bp):
TTAAAGTTGTGAATTGT
Found at i:7650501 original size:19 final size:19
Alignment explanation
Indices: 7650453--7650512 Score: 56
Period size: 15 Copynumber: 3.3 Consensus size: 19
7650443 TGGATGGATG
*
7650453 GATGCTATGGATATTTTAT
1 GATGTTATGGATATTTTAT
*
7650472 GA----ATTGATATTTTAT
1 GATGTTATGGATATTTTAT
*
7650487 GATGTTATGGATATTTGAT
1 GATGTTATGGATATTTTAT
7650506 AGATGTT
1 -GATGTT
7650513 TGATGAATGT
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
15 14 0.42
19 13 0.39
20 6 0.18
ACGTcount: A:0.28, C:0.02, G:0.22, T:0.48
Consensus pattern (19 bp):
GATGTTATGGATATTTTAT
Found at i:7658103 original size:152 final size:154
Alignment explanation
Indices: 7657864--7658171 Score: 403
Period size: 152 Copynumber: 2.0 Consensus size: 154
7657854 AAGTGTGAAC
* * * *
7657864 TCTAAAAGTATTAAAAGTGAACGACATAAATACCTCTATGAATTTTAAGAAATAATAAATTTACC
1 TCTAAAAGTATTAAAAGTGAACAACATAAATACCTCTATAAATTTTAAGAAATAACAAATTTACA
* *
7657929 TTTAAATTTCTAGCATTTTTTATTTATTTAATAAAGATTATTTGTCATTAAATATATAAC-TTTT
66 TTTAAATTTCTAGCATTATTTATTTATTTAATAAAGATTATTTGACATTAAATATATAACTTTTT
*
7657993 ATT-AGTTAGTTATTTAAA-TTAAA
131 ATTCA-TTACTTATTTAAATTTAAA
* * *
7658016 TCTAAAAGTGTTAAATA-TGAATAACATAAATATCCT-TATAAATTTTAA-AAATTAACACATTT
1 TCTAAAAGTATTAAA-AGTGAACAACATAAATA-CCTCTATAAATTTTAAGAAA-TAACAAATTT
* * * * *
7658078 ATATTTCAATTTTTAGCATTATTTATTTATTTAATAATGATTATTTGACATTAAATATATAGCTT
63 ACATTTAAATTTCTAGCATTATTTATTTATTTAATAAAGATTATTTGACATTAAATATATAACTT
7658143 TTTATTCATTACTTATTTAAATTTAAA
128 TTTATTCATTACTTATTTAAATTTAAA
7658170 TC
1 TC
7658172 AATTAAAAAT
Statistics
Matches: 135, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
151 3 0.02
152 101 0.75
153 23 0.17
154 8 0.06
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (154 bp):
TCTAAAAGTATTAAAAGTGAACAACATAAATACCTCTATAAATTTTAAGAAATAACAAATTTACA
TTTAAATTTCTAGCATTATTTATTTATTTAATAAAGATTATTTGACATTAAATATATAACTTTTT
ATTCATTACTTATTTAAATTTAAA
Found at i:7658661 original size:23 final size:24
Alignment explanation
Indices: 7658614--7658665 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
7658604 AATTTAGATT
*
7658614 AATTA-AAATTAAAGTTCATATAA
1 AATTATAAATTAAAGTTCATAAAA
7658637 AATTATAAATTAAA-TT-ATCAAAA
1 AATTATAAATTAAAGTTCAT-AAAA
7658660 AATTAT
1 AATTAT
7658666 TAAAAAAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
22 2 0.08
23 16 0.62
24 8 0.31
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.37
Consensus pattern (24 bp):
AATTATAAATTAAAGTTCATAAAA
Found at i:7661191 original size:22 final size:22
Alignment explanation
Indices: 7661120--7661223 Score: 75
Period size: 22 Copynumber: 4.7 Consensus size: 22
7661110 ACAATACCAA
* * * *
7661120 TAATAACTTTATATTAAATCAA
1 TAATAACTTAATAGTAAATTAT
* *
7661142 TGATAAC-TATATATTAAATTAT
1 TAATAACTTA-ATAGTAAATTAT
** *
7661164 GGATAACTTATTAGTAAATTAT
1 TAATAACTTAATAGTAAATTAT
* * *
7661186 TAATAACATAATAGTAAATAAA
1 TAATAACTTAATAGTAAATTAT
*
7661208 TAATAATTTAATAGTA
1 TAATAACTTAATAGTA
7661224 CATAATTGGT
Statistics
Matches: 65, Mismatches: 15, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
21 1 0.02
22 62 0.95
23 2 0.03
ACGTcount: A:0.50, C:0.05, G:0.06, T:0.39
Consensus pattern (22 bp):
TAATAACTTAATAGTAAATTAT
Found at i:7661223 original size:44 final size:44
Alignment explanation
Indices: 7661118--7661444 Score: 150
Period size: 44 Copynumber: 7.5 Consensus size: 44
7661108 AGACAATACC
* * * *
7661118 AATAATAACTTTATATTAAATCAATGATAAC-TATATATTAAAT-
1 AATAATAACTTAATAGTAAATTAATGATAACATA-ATAGTAAATA
* * * * *
7661161 TATGGATAACTTATTAGTAAATTATTAATAACATAATAGTAAATA
1 AAT-AATAACTTAATAGTAAATTAATGATAACATAATAGTAAATA
* * * * ** *
7661206 AATAATAATTTAATAGTACA-TAATTGGTAAGATAGAT-GTATGTC
1 AATAATAACTTAATAGTAAATTAA-TGATAACATA-ATAGTAAATA
*** * * * *
7661250 AGGGATAACATAATAATAAA-TACATAATAATATAATAGTAAATA
1 AATAATAACTTAATAGTAAATTA-ATGATAACATAATAGTAAATA
* * *
7661294 ACA-AATAACTTAATAGTAAATTATTTAT-ACATAATTGTAAATA
1 A-ATAATAACTTAATAGTAAATTAATGATAACATAATAGTAAATA
* * * * *** *
7661337 CATAA-AAATAAACTAGTAAATTAAGGATAGTTTAATA-AAAATA
1 AATAATAACTTAA-TAGTAAATTAATGATAACATAATAGTAAATA
* * * * * * *
7661380 AGTGATAACTTAATAGTAAATCAATGATAACTTAGTAATAAATT
1 AATAATAACTTAATAGTAAATTAATGATAACATAATAGTAAATA
*
7661424 AATAATAAGTTAATAGTAAAT
1 AATAATAACTTAATAGTAAAT
7661445 AAGATTCAAT
Statistics
Matches: 202, Mismatches: 68, Indels: 27
0.68 0.23 0.09
Matches are distributed among these distances:
42 6 0.03
43 59 0.29
44 128 0.63
45 9 0.04
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.34
Consensus pattern (44 bp):
AATAATAACTTAATAGTAAATTAATGATAACATAATAGTAAATA
Found at i:7661276 original size:14 final size:15
Alignment explanation
Indices: 7661257--7661286 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7661247 GTCAGGGATA
7661257 ACATAATAATA-AAT
1 ACATAATAATATAAT
7661271 ACATAATAATATAAT
1 ACATAATAATATAAT
7661286 A
1 A
7661287 GTAAATAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
ACATAATAATATAAT
Found at i:7661279 original size:22 final size:22
Alignment explanation
Indices: 7661254--7661314 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
7661244 TATGTCAGGG
*
7661254 ATAACATAATAATAAAT-ACATA
1 ATAACATAATAGTAAATAACA-A
*
7661276 ATAATATAATAGTAAATAACAA
1 ATAACATAATAGTAAATAACAA
*
7661298 ATAACTTAATAGTAAAT
1 ATAACATAATAGTAAAT
7661315 TATTTATACA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 31 0.91
23 3 0.09
ACGTcount: A:0.61, C:0.07, G:0.03, T:0.30
Consensus pattern (22 bp):
ATAACATAATAGTAAATAACAA
Found at i:7661407 original size:22 final size:22
Alignment explanation
Indices: 7661382--7661444 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 22
7661372 TAAAAATAAG
7661382 TGATAACTTAATAGTAAATCAA
1 TGATAACTTAATAGTAAATCAA
* * *
7661404 TGATAACTTAGTAATAAATTAA
1 TGATAACTTAATAGTAAATCAA
* *
7661426 TAATAAGTTAATAGTAAAT
1 TGATAACTTAATAGTAAAT
7661445 AAGATTCAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.35
Consensus pattern (22 bp):
TGATAACTTAATAGTAAATCAA
Found at i:7661429 original size:11 final size:11
Alignment explanation
Indices: 7661384--7661444 Score: 50
Period size: 11 Copynumber: 5.5 Consensus size: 11
7661374 AAAATAAGTG
*
7661384 ATAACTTAATA
1 ATAAATTAATA
* * *
7661395 GTAAATCAATG
1 ATAAATTAATA
* *
7661406 ATAACTTAGTA
1 ATAAATTAATA
7661417 ATAAATTAATA
1 ATAAATTAATA
*
7661428 ATAAGTTAATA
1 ATAAATTAATA
*
7661439 GTAAAT
1 ATAAAT
7661445 AAGATTCAAT
Statistics
Matches: 36, Mismatches: 14, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
11 36 1.00
ACGTcount: A:0.52, C:0.05, G:0.08, T:0.34
Consensus pattern (11 bp):
ATAAATTAATA
Found at i:7661951 original size:44 final size:44
Alignment explanation
Indices: 7661807--7662011 Score: 166
Period size: 44 Copynumber: 4.7 Consensus size: 44
7661797 AGTAATAATT
* * * *
7661807 AATAATTAATAA-TTAAAAATAAATCAAT-ATAACTTAATAGT-
1 AATAATTGATAACTTAATAGTAAATCAATAATAATTTAATAGTA
* * * * *
7661848 AATCATTGATAAATTAATAGTTAATCAGTGATAATTTAGTATAGTA
1 AATAATTGATAACTTAATAGTAAATCAATAATAATTTA--ATAGTA
* * *
7661894 AATTAGTGATAACTTAATAGTATATCAATAATAATTTAATAGTA
1 AATAATTGATAACTTAATAGTAAATCAATAATAATTTAATAGTA
* * ** *
7661938 AATAATTGATAACTTAGTAGTAAATTAATAATAACATAATAATA
1 AATAATTGATAACTTAATAGTAAATCAATAATAATTTAATAGTA
** * *
7661982 AACGCA-TAATAATTTAATAGTAAATCAATA
1 AA-TAATTGATAACTTAATAGTAAATCAATA
7662012 TAACATAATT
Statistics
Matches: 130, Mismatches: 28, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
41 10 0.08
42 12 0.09
43 7 0.05
44 64 0.49
45 6 0.05
46 31 0.24
ACGTcount: A:0.51, C:0.05, G:0.08, T:0.36
Consensus pattern (44 bp):
AATAATTGATAACTTAATAGTAAATCAATAATAATTTAATAGTA
Found at i:7661959 original size:22 final size:22
Alignment explanation
Indices: 7661835--7662159 Score: 110
Period size: 22 Copynumber: 14.8 Consensus size: 22
7661825 ATAAATCAAT
*
7661835 ATAACTTAATAGT-AATCATTG
1 ATAACTTAATAGTAAATAATTG
* * * *
7661856 ATAAATTAATAGTTAATCAGTG
1 ATAACTTAATAGTAAATAATTG
* * *
7661878 ATAATTTAGTATAGTAAATTAGTG
1 ATAACTTA--ATAGTAAATAATTG
* *
7661902 ATAACTTAATAGTATATCAA-TA
1 ATAACTTAATAGTAAAT-AATTG
*
7661924 ATAATTTAATAGTAAATAATTG
1 ATAACTTAATAGTAAATAATTG
* *
7661946 ATAACTTAGTAGTAAATTAA-TA
1 ATAACTTAATAGTAAA-TAATTG
* * ** *
7661968 ATAACATAATAATAAACGCA-TA
1 ATAACTTAATAGTAAA-TAATTG
*
7661990 ATAATTTAATAGTAAATCAA-T-
1 ATAACTTAATAGTAAAT-AATTG
* * * *
7662011 ATAACATAATTGTAAATGCA-TA
1 ATAACTTAATAGTAAAT-AATTG
* * * *
7662033 ATAGCATAGTTGTAAATTAA-TG
1 ATAACTTAATAGTAAA-TAATTG
* ** *
7662055 ATAACTCAATAAAAAATAAATG
1 ATAACTTAATAGTAAATAATTG
* * *
7662077 ATAATTTAATAGTTAATTATTG
1 ATAACTTAATAGTAAATAATTG
* * *
7662099 ATAATTTAGTAGTAAATCAA-GG
1 ATAACTTAATAGTAAAT-AATTG
* * * * * * *
7662121 AAAACTTAGTAATAAGTTACTA
1 ATAACTTAATAGTAAATAATTG
7662143 ATAACTTAATAGTAAAT
1 ATAACTTAATAGTAAAT
7662160 CTATTTTAGT
Statistics
Matches: 228, Mismatches: 64, Indels: 23
0.72 0.20 0.07
Matches are distributed among these distances:
21 34 0.15
22 169 0.74
23 6 0.03
24 19 0.08
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.35
Consensus pattern (22 bp):
ATAACTTAATAGTAAATAATTG
Found at i:7661978 original size:66 final size:65
Alignment explanation
Indices: 7661826--7662006 Score: 193
Period size: 66 Copynumber: 2.7 Consensus size: 65
7661816 TAATTAAAAA
* * * * * * *
7661826 TAAATCAATATAACTTAATAGTAATCATTGATAAATTAATAGTTAATCAGTGATAATTTAGTATA
1 TAAATTAATATAACTTAATAGTAATCAATAATAATTTAATAGTAAATAAGTGATAACTTAG-ATA
7661891 G
65 G
* *
7661892 TAAATTAGTGATAACTTAATAGTATATCAATAATAATTTAATAGTAAATAATTGATAACTTAG-T
1 TAAATTAAT-ATAACTTAATAGTA-ATCAATAATAATTTAATAGTAAATAAGTGATAACTTAGAT
7661956 AG
64 AG
* * * *
7661958 TAAATTAATAATAACATAATAATAAACGCATAATAATTTAATAGTAAAT
1 TAAATTAAT-ATAACTTAATAGTAATC-AATAATAATTTAATAGTAAAT
7662007 CAATATAACA
Statistics
Matches: 97, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
65 2 0.02
66 50 0.52
67 14 0.14
68 31 0.32
ACGTcount: A:0.49, C:0.06, G:0.09, T:0.36
Consensus pattern (65 bp):
TAAATTAATATAACTTAATAGTAATCAATAATAATTTAATAGTAAATAAGTGATAACTTAGATAG
Found at i:7662235 original size:22 final size:22
Alignment explanation
Indices: 7662183--7662235 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
7662173 ATAGTAATTA
*
7662183 AATGATAAACTTAGCAGTAAATC
1 AATGAT-AACTTAGCAATAAATC
*
7662206 ACA-AATAACTTAGCAATAAATC
1 A-ATGATAACTTAGCAATAAATC
7662228 AATGATAA
1 AATGATAA
7662236 TTTAATAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 1 0.04
22 20 0.80
23 3 0.12
24 1 0.04
ACGTcount: A:0.53, C:0.13, G:0.09, T:0.25
Consensus pattern (22 bp):
AATGATAACTTAGCAATAAATC
Found at i:7662330 original size:22 final size:22
Alignment explanation
Indices: 7662304--7662446 Score: 110
Period size: 22 Copynumber: 6.5 Consensus size: 22
7662294 ATAATAGTAT
*
7662304 ATAGTAAATTGTTGATAATTTA
1 ATAGTAAATTATTGATAATTTA
7662326 ATAGTAAATTATTGATAATTTA
1 ATAGTAAATTATTGATAATTTA
* * * * * *
7662348 GTAGTAAATCACTAATAATGTC
1 ATAGTAAATTATTGATAATTTA
* * **
7662370 ATCGTAAATCATTGATAACATA
1 ATAGTAAATTATTGATAATTTA
* *
7662392 GCT-GTAAATTAGTGATAATTTA
1 -ATAGTAAATTATTGATAATTTA
* *
7662414 GTTA-TAAATTAATGATAATTTA
1 -ATAGTAAATTATTGATAATTTA
*
7662436 ATTGTAAATTA
1 ATAGTAAATTA
7662447 GTTAATTATT
Statistics
Matches: 95, Mismatches: 23, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
21 1 0.01
22 93 0.98
23 1 0.01
ACGTcount: A:0.43, C:0.05, G:0.12, T:0.41
Consensus pattern (22 bp):
ATAGTAAATTATTGATAATTTA
Found at i:7662507 original size:22 final size:22
Alignment explanation
Indices: 7662450--7662549 Score: 112
Period size: 22 Copynumber: 4.5 Consensus size: 22
7662440 TAAATTAGTT
* *
7662450 AATTATTAATAACTTCATACTA
1 AATTATCAATAACTTCATAATA
* *
7662472 AATCATCAAAAACTTCATAATA
1 AATTATCAATAACTTCATAATA
*
7662494 AATTAGT-AATAACTTTATAATA
1 AATTA-TCAATAACTTCATAATA
* * *
7662516 AATTATCTATAACTTAATAGTA
1 AATTATCAATAACTTCATAATA
7662538 AATTATCAATAA
1 AATTATCAATAA
7662550 TTTAGTAGTA
Statistics
Matches: 65, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
21 1 0.02
22 63 0.97
23 1 0.02
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.37
Consensus pattern (22 bp):
AATTATCAATAACTTCATAATA
Found at i:7662549 original size:44 final size:44
Alignment explanation
Indices: 7662445--7662596 Score: 137
Period size: 44 Copynumber: 3.5 Consensus size: 44
7662435 AATTGTAAAT
* * * * * * * *
7662445 TAGTTAATTATTAATAACTTCATACTAAATCATCAAAAACTTCA
1 TAGTAAATTATCAATAACTTTATAATAAATTATCTATAACTTAA
*
7662489 TAATAAATTAGT-AATAACTTTATAATAAATTATCTATAACTTAA
1 TAGTAAATTA-TCAATAACTTTATAATAAATTATCTATAACTTAA
* * * *
7662533 TAGTAAATTATCAATAA-TTTAGTAGTAAATTGTTTATAATTTAA
1 TAGTAAATTATCAATAACTTTA-TAATAAATTATCTATAACTTAA
* *
7662577 TAGTAAATCATCTATAACTT
1 TAGTAAATTATCAATAACTT
7662597 AGTGATAAAT
Statistics
Matches: 89, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
43 5 0.06
44 81 0.91
45 3 0.03
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (44 bp):
TAGTAAATTATCAATAACTTTATAATAAATTATCTATAACTTAA
Found at i:7662558 original size:22 final size:22
Alignment explanation
Indices: 7662514--7662628 Score: 108
Period size: 22 Copynumber: 5.2 Consensus size: 22
7662504 AACTTTATAA
* *
7662514 TAAATTATCTATAACTTAATAG
1 TAAATTATCTATAATTTAGTAG
*
7662536 TAAATTATCAATAATTTAGTAG
1 TAAATTATCTATAATTTAGTAG
* * *
7662558 TAAATTGTTTATAATTTAATAG
1 TAAATTATCTATAATTTAGTAG
* *
7662580 TAAATCATCTATAACTTAGT-G
1 TAAATTATCTATAATTTAGTAG
* *
7662601 ATAAATTAAT-GATAATTTAGTTG
1 -TAAATT-ATCTATAATTTAGTAG
7662624 TAAAT
1 TAAAT
7662629 CAGTGATAAG
Statistics
Matches: 75, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
21 1 0.01
22 71 0.95
23 3 0.04
ACGTcount: A:0.43, C:0.05, G:0.09, T:0.43
Consensus pattern (22 bp):
TAAATTATCTATAATTTAGTAG
Found at i:7662562 original size:66 final size:66
Alignment explanation
Indices: 7662492--7662637 Score: 156
Period size: 66 Copynumber: 2.2 Consensus size: 66
7662482 AACTTCATAA
*
7662492 TAAATTAGTAATAACTTT-ATAATAAATTATCTATAACTTAAT-AGTAAATT-ATCAATAATTTA
1 TAAATTAGTAATAA-TTTAATAATAAATCATCTATAACTTAATGA-TAAATTAAT-AATAATTTA
7662554 GTAG
63 GTAG
* * * *
7662558 TAAATT-GTTTATAATTTAATAGTAAATCATCTATAACTTAGTGATAAATTAATGATAATTTAGT
1 TAAATTAG-TAATAATTTAATAATAAATCATCTATAACTTAATGATAAATTAATAATAATTTAGT
*
7662622 TG
65 AG
* *
7662624 TAAATCAGTGATAA
1 TAAATTAGTAATAA
7662638 GATAGTAATA
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
65 4 0.06
66 59 0.88
67 4 0.06
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.41
Consensus pattern (66 bp):
TAAATTAGTAATAATTTAATAATAAATCATCTATAACTTAATGATAAATTAATAATAATTTAGTA
G
Found at i:7662599 original size:44 final size:44
Alignment explanation
Indices: 7662513--7662630 Score: 130
Period size: 44 Copynumber: 2.7 Consensus size: 44
7662503 TAACTTTATA
* * * *
7662513 ATAAATTATCTATAACTTAATAGTAAATTATCAATAATTTAGT-
1 ATAAATTATTTATAATTTAATAGTAAATCATCAATAACTTAGTG
* *
7662556 AGTAAATTGTTTATAATTTAATAGTAAATCATCTATAACTTAGTG
1 A-TAAATTATTTATAATTTAATAGTAAATCATCAATAACTTAGTG
* * * *
7662601 ATAAATTAATGATAATTTAGTTGTAAATCA
1 ATAAATTATTTATAATTTAATAGTAAATCA
7662631 GTGATAAGAT
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
43 1 0.02
44 60 0.97
45 1 0.02
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.42
Consensus pattern (44 bp):
ATAAATTATTTATAATTTAATAGTAAATCATCAATAACTTAGTG
Found at i:7662942 original size:45 final size:46
Alignment explanation
Indices: 7662880--7662968 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 46
7662870 ATTGTAATTT
* *
7662880 ATTGATAAATTAATAGTAAATCATAAATAACTTAGTAG-TAATTCA
1 ATTGATAAATTAATAGTAAATAATAAATAACTTAATAGCTAATTCA
* * **
7662925 ATTGATAACTTAGTAGTAAATAATTGATAACTTAATAGCTAATT
1 ATTGATAAATTAATAGTAAATAATAAATAACTTAATAGCTAATT
7662969 GTTAAATTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 32 0.86
46 5 0.14
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (46 bp):
ATTGATAAATTAATAGTAAATAATAAATAACTTAATAGCTAATTCA
Found at i:7662952 original size:22 final size:22
Alignment explanation
Indices: 7662880--7662958 Score: 95
Period size: 22 Copynumber: 3.5 Consensus size: 22
7662870 ATTGTAATTT
* * *
7662880 ATTGATAAATTAATAGTAAATC
1 ATTGATAACTTAGTAGTAAATA
** *
7662902 ATAAATAACTTAGTAGTAATTCA
1 ATTGATAACTTAGTAGTAAAT-A
7662925 ATTGATAACTTAGTAGTAAATA
1 ATTGATAACTTAGTAGTAAATA
7662947 ATTGATAACTTA
1 ATTGATAACTTA
7662959 ATAGCTAATT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
22 29 0.62
23 18 0.38
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (22 bp):
ATTGATAACTTAGTAGTAAATA
Found at i:7663079 original size:22 final size:21
Alignment explanation
Indices: 7663035--7663090 Score: 76
Period size: 22 Copynumber: 2.6 Consensus size: 21
7663025 TAAATCATTG
* *
7663035 AATTTAGTAGTAATCACTTAT
1 AATTTAGTAGTAATCAATGAT
*
7663056 AATTTAGTTGTATATCAATGAT
1 AATTTAGTAGTA-ATCAATGAT
7663078 AATTTAGTAGTAA
1 AATTTAGTAGTAA
7663091 ATTAATTAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 12 0.40
22 18 0.60
ACGTcount: A:0.39, C:0.05, G:0.12, T:0.43
Consensus pattern (21 bp):
AATTTAGTAGTAATCAATGAT
Found at i:7663140 original size:22 final size:22
Alignment explanation
Indices: 7663115--7663166 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
7663105 GATAATTTTG
7663115 TAGTAAATATTTCATAACTTAA
1 TAGTAAATATTTCATAACTTAA
* * *
7663137 TAGTAAATCTTTGATAATTTAA
1 TAGTAAATATTTCATAACTTAA
*
7663159 TAATAAAT
1 TAGTAAAT
7663167 TACTGATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (22 bp):
TAGTAAATATTTCATAACTTAA
Found at i:7663196 original size:22 final size:22
Alignment explanation
Indices: 7663134--7663197 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
7663124 TTTCATAACT
* ** *
7663134 TAATAGTAAATCTTTGATAATT
1 TAATAATAAATCACTGATAATA
*
7663156 TAATAATAAATTACTGATAATA
1 TAATAATAAATCACTGATAATA
*
7663178 TAGTAATAAATCCAC-GATAA
1 TAATAATAAAT-CACTGATAA
7663198 CTTAGTTATC
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
22 32 0.94
23 2 0.06
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (22 bp):
TAATAATAAATCACTGATAATA
Found at i:7663386 original size:22 final size:22
Alignment explanation
Indices: 7663337--7663386 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
7663327 TCGAATTTAT
7663337 TGATAATTTAATGATAATTCAG
1 TGATAATTTAATGATAATTCAG
* *
7663359 TTATAATTTAATTATAAATT-AG
1 TGATAATTTAATGAT-AATTCAG
7663381 TGATAA
1 TGATAA
7663387 CAATAAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (22 bp):
TGATAATTTAATGATAATTCAG
Found at i:7663394 original size:17 final size:17
Alignment explanation
Indices: 7663372--7663404 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7663362 TAATTTAATT
*
7663372 ATAAATTAGTGATAACA
1 ATAAATTAATGATAACA
7663389 ATAAATTAATGATAAC
1 ATAAATTAATGATAAC
7663405 TTATAATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.06, G:0.09, T:0.30
Consensus pattern (17 bp):
ATAAATTAATGATAACA
Found at i:7663490 original size:22 final size:23
Alignment explanation
Indices: 7663448--7663505 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
7663438 TATGAATCAC
* *
7663448 TTAATACTAAATTATTCATAT-T
1 TTAATAGTAAATTAGTCATATAT
*
7663470 TTAATAGTAAATTAGTGATATAAT
1 TTAATAGTAAATTAGTCATAT-AT
*
7663494 TTAGTAGTAAAT
1 TTAATAGTAAAT
7663506 CATCGATAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
22 18 0.60
24 12 0.40
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (23 bp):
TTAATAGTAAATTAGTCATATAT
Found at i:7663513 original size:24 final size:22
Alignment explanation
Indices: 7663473--7663531 Score: 57
Period size: 24 Copynumber: 2.5 Consensus size: 22
7663463 TCATATTTTA
*
7663473 ATAGTAAATTAGTGAT-ATAATTT
1 ATAGTAAATCA-TGATAAT-ATTT
*
7663496 AGTAGTAAATCATCGATAATATAT
1 A-TAGTAAATCAT-GATAATATTT
7663520 ATAGTAAATCAT
1 ATAGTAAATCAT
7663532 TACTAACTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
23 13 0.42
24 16 0.52
25 2 0.06
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.37
Consensus pattern (22 bp):
ATAGTAAATCATGATAATATTT
Found at i:7666429 original size:34 final size:35
Alignment explanation
Indices: 7666391--7666466 Score: 127
Period size: 36 Copynumber: 2.2 Consensus size: 35
7666381 AAAAGGCATA
7666391 GAAAATATAGC-CTCTATTCTTTCTCTTTGCATTC
1 GAAAATATAGCACTCTATTCTTTCTCTTTGCATTC
*
7666425 GAAAATATAGCATCTCTTTTCTTTCTCTTTGCATTC
1 GAAAATATAGCA-CTCTATTCTTTCTCTTTGCATTC
7666461 GAAAAT
1 GAAAAT
7666467 GACTCGATTA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
34 11 0.28
36 28 0.72
ACGTcount: A:0.26, C:0.21, G:0.09, T:0.43
Consensus pattern (35 bp):
GAAAATATAGCACTCTATTCTTTCTCTTTGCATTC
Found at i:7674019 original size:18 final size:18
Alignment explanation
Indices: 7673996--7674037 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
7673986 TATTATTACC
7673996 ATTATTATT-TTAATGAAT
1 ATTATTATTCTTAAT-AAT
*
7674014 ATTATTATTCTTTATAAT
1 ATTATTATTCTTAATAAT
7674032 ATTATT
1 ATTATT
7674038 CAATTTAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (18 bp):
ATTATTATTCTTAATAAT
Found at i:7674230 original size:8 final size:8
Alignment explanation
Indices: 7674209--7674252 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
7674199 ATTTTTTATG
7674209 AAATTACAT
1 AAATTA-AT
*
7674218 AAATTACT
1 AAATTAAT
7674226 AAATT-AT
1 AAATTAAT
*
7674233 TAATTAAT
1 AAATTAAT
7674241 AAATTAAT
1 AAATTAAT
7674249 AAAT
1 AAAT
7674253 AACATCTTAC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
7 5 0.17
8 19 0.63
9 6 0.20
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.39
Consensus pattern (8 bp):
AAATTAAT
Found at i:7678427 original size:51 final size:51
Alignment explanation
Indices: 7678343--7678441 Score: 137
Period size: 51 Copynumber: 1.9 Consensus size: 51
7678333 AACCATACAT
* *
7678343 ACTTGCCTATTAAGAATCCATTTTCTCTTAAATTTTTTTTTTGCAAGTTAA
1 ACTTGCCTATTAAGAATCCATTTTCTCTTAAATTCTTTTTTTACAAGTTAA
** *
7678394 ACTTGCCTATTAAGAAT-TTTTTTCTTTTAAAATTCTTTTTTTACAAGT
1 ACTTGCCTATTAAGAATCCATTTTCTCTT-AAATTCTTTTTTTACAAGT
7678442 CTTCTTGTCC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 8 0.19
51 34 0.81
ACGTcount: A:0.27, C:0.14, G:0.07, T:0.52
Consensus pattern (51 bp):
ACTTGCCTATTAAGAATCCATTTTCTCTTAAATTCTTTTTTTACAAGTTAA
Found at i:7678860 original size:932 final size:925
Alignment explanation
Indices: 7676940--7679433 Score: 2881
Period size: 932 Copynumber: 2.7 Consensus size: 925
7676930 ACTATAACTC
* * **
7676940 TGATATCACTTGTTGGGCAAAAAGTCTCAATCCAATCAAGTCAATGGAAGCAAAATCAAATAATC
1 TGATATCACTTGTTGGGCAAAAAGTCTCAATCCAATCAAG-CAACGAAAGTGAAATCAAATAATC
* * * * * * *
7677005 AATCAATCACATAAGAGATAACAATTTAACATGATTT-AGTCCAACCAACTTATGTCCACATATG
65 AATCAATCATATAAGAGATAACAATTTAACATGGTTTGA-TTCAACTAACTTACGTCCACAAATA
7677069 AGAAATAAGATCCATTAGTTGTAGAGAATTACAAACAAATATCAAATCAAATCAAACACTCATAA
129 AGAAATAAGATCCATTAGTTGTAGAGAATTACAAACAAATATCAAATCAAATCAAACACTCATAA
* * *
7677134 CTAATACCCATATG-CCCTCTTAATCTCC-TCTAGTTATTCTCAACCCAAACAAACACATACCCA
194 CTAATACCCATA-GACCCTC-TAATCTCCTTCTAGTTATTCTTAACCCAAACAAACATATATCCA
* *
7677197 TATGCACCCTTTCAACACAACCAAACACAGACCCATATGTACAT--ATATAGTATACCTATGTGG
257 T-TGTA-CCTTTCAACACAACCAAACACATACCCATA--TACATCCATATA-TATACCTATGTGG
* *
7677260 ACCCTCTCAATCTCCTT-TAGTTCACTCTCAAACATTCAAACATACACACCTATAAGACGTAAAT
317 ACCCTCTCAATCT-CTTCTAGTTCACTCTCAAACATTCAAACATATACA-CTATAAGACATAAAT
* * ** * **
7677324 CCCTAGTACTCCTATTG-GGTGTTTATCCCATAAAACCTTACAACTCTCTTACATCTTTTTCTCA
380 CTCTAGTATTTTTA-TGAGGTGTCTATCTTATAAAA-CTTACAACTCTCTTACATCTTTTTCTCA
* * * *
7677388 TACCTAACCTTGTAGAGACTTCACCTATTTATAACCATACATACTTACCTATTATGAATCCATTT
443 TACCTAATC-TATAGAGACTTCACCTATTTATAACCATACATACTTGCCTATTAAGAATCCATTT
*
7677453 TCTCTT--A----------G-AA-TT---C-TGCCTATTAAGAATCCCTTTTTTTTT--AATTCT
507 TCTCTTAAATTTTTTTTTTGCAAGTTAAACTTGCCTATTAAGAAT-CTTTTTTTTTTAAAATTCT
* * * * **
7677498 TTTTTTGCAAATTTTTTTAGT-CATCAAGCAATATCTGCACAATTGCAAACAAATCTCTTA-AGA
571 TTTTTTACAAGTCTTCTT-GTCCATCAAGCAATATCTGCACAATCCCAAACAAATCTCTTATAG-
* * * *
7677561 GATTTAAGTCATTATTCCTAATAATCTCCACCTTGACTCAAATTCTATTAAATCATCTATTTTCA
634 GATTTGAGTCATTATTCCTAACAATCTCCACCTTAACTCAAATTCTATCAAATCATCTATTTTCA
* * * * **
7677626 TGCTAGACATGCTTGGCTTCACTTGCAATGGAAGTCTCACAATCATCTTTTCTTGTGTGTTTTCA
699 TGCTAGACATACTTAGCTTCACCTGCAATAGAAGTCTCACAATCATCTTTTCTTGTAAGTTTTCA
* * * *
7677691 CATTTTATGCATACTAATCCTCAATTCTTAAAACTTGAACTCAAACTCTTCTCTTGAATTGGGCT
764 CATTTCATGCAAACTAATCCTCAATTCTCAAAACTTGAACTCAAACTCTTCTCTTGAATTGAGCT
* * * * * * * *
7677756 CCTTTAGGTTTGCCTCTTCCCATGTCTTGAACCTTCAGCTCTTTTCACATCTTAAACATTTAGCT
829 CATCTAGGCTTGCATCTTCCCATGTCTCGAACCTTCAGCTCTTTTCACATCTCAAACATTCAACT
* *
7677821 CTGATACCACTTGTTAAGTATCACCATAGCTT
894 CTGATACCACTTGTTAAGGATCACCACAGCTT
* * *
7677853 TGATATCACTTGTTGGGTAAAAAGTCTCAATCCAATCAAGCCAACGTAAGTGAAATCAAATTATC
1 TGATATCACTTGTTGGGCAAAAAGTCTCAATCCAATCAAG-CAACGAAAGTGAAATCAAATAATC
* * ** *
7677918 AATCAATCATATAAAAGATAATAATTTAATGTGGTTTGATTCAACTAACTTACGTTCACAAATAA
65 AATCAATCATATAAGAGATAACAATTTAACATGGTTTGATTCAACTAACTTACGTCCACAAATAA
* * *
7677983 GAAATAAGATTCATTAATTGTAAAGAATTACAAACAAATATCAAATCAAAT-AAACACTCATAAC
130 GAAATAAGATCCATTAGTTGTAGAGAATTACAAACAAATATCAAATCAAATCAAACACTCATAAC
*
7678047 TAATACTCATAGACCCTCTCAATCTCCTTCTAGTTATTCTTAACCCAAACAAACATATATCCATG
195 TAATACCCATAGACCCTCT-AATCTCCTTCTAGTTATTCTTAACCCAAACAAACATATATCCAT-
* *
7678112 TGTACCTTTTCAACACAACCAAGCACATACCCATATACATCCATATATCATACCTATGCGGACCC
258 TGTACC-TTTCAACACAACCAAACACATACCCATATACATCCATATAT-ATACCTATGTGGACCC
* *
7678177 TCTCAATCTCTTCTAG-TCTACTCTCAAACATTCAAACATGTATACTAATAAGACATAAATCTCT
321 TCTCAATCTCTTCTAGTTC-ACTCTCAAACATTCAAACATATACACT-ATAAGACATAAATCTCT
* *
7678241 AGTATTTTTATGAGGTGTCTATCTTATAAAATCTTATAACTCTCTTACATCTTTTTTTCATACCT
384 AGTATTTTTATGAGGTGTCTATCTTATAAAA-CTTACAACTCTCTTACATCTTTTTCTCATACCT
*
7678306 AATTCTATAGAGACTTCACTTATTTATAACCATACATACTTGCCTATTAAGAATCCATTTTCTCT
448 AA-TCTATAGAGACTTCACCTATTTATAACCATACATACTTGCCTATTAAGAATCCATTTTCTCT
7678371 TAAATTTTTTTTTTGCAAGTTAAACTTGCCTATTAAGAAT-TTTTTTCTTTTAAAATTCTTTTTT
512 TAAATTTTTTTTTTGCAAGTTAAACTTGCCTATTAAGAATCTTTTTT-TTTTAAAATTCTTTTTT
** **
7678435 TACAAGTCTTCTTGTCCATCAAATAATATCTGCGGAATCCCAAACAAATCTCTTATAGGATTTGA
576 TACAAGTCTTCTTGTCCATCAAGCAATATCTGCACAATCCCAAACAAATCTCTTATAGGATTTGA
*
7678500 GTCATTATTCCTAACAATCTCCACCTTAACTCAAATT-TCATCAAATCATCTGTCTTT-ATGCTA
641 GTCATTATTCCTAACAATCTCCACCTTAACTCAAATTCT-ATCAAATCATCTAT-TTTCATGCTA
* * * * **
7678563 GACATATTTAGTTTCACCTGCAATAGAAGTTTCACAATCATCTTTTCTTGTAAGTTTTTAGGTTT
704 GACATACTTAGCTTCACCTGCAATAGAAGTCTCACAATCATCTTTTCTTGTAAGTTTTCACATTT
* * *
7678628 CATGCAAATTGATCCTCAATTCTCAAAATTTGAACTCAAACTCTTCTCTTGAATTGAGCTCATCT
769 CATGCAAACTAATCCTCAATTCTCAAAACTTGAACTCAAACTCTTCTCTTGAATTGAGCTCATCT
* * * * * * *
7678693 AGGCTTGTCAT-TTCCTATGTCTCGAACCTTCAGCTCTTTTTATATCTCGAACCTTCAATTTTGA
834 AGGCTTG-CATCTTCCCATGTCTCGAACCTTCAGCTCTTTTCACATCTCAAACATTCAACTCTGA
* * * *
7678757 TACTACTTGTTAGGGATTAGCACAGCTT
898 TACCACTTGTTAAGGATCACCACAGCTT
* * *
7678785 TGATATTACTTGTTAGACAAAAAGT-TCCAATCCAATCAAGCAAACGAAAGTGAAATCAAATAAT
1 TGATATCACTTGTTGGGCAAAAAGTCT-CAATCCAATCAAGC-AACGAAAGTGAAATCAAATAAT
* * * * * ** * *
7678849 TAATTAATCATATAAGAGATAACAATTTAACATAGTTCGA-TCGAAATGGCTTACGACCACAGAT
64 CAATCAATCATATAAGAGATAACAATTTAACATGGTTTGATTC-AACTAACTTACGTCCACAAAT
* * *
7678913 AACAAATAAGATCCATTAGTTGTAGAGAATTACAAACAAATATCAAATCCAATCAAATACTCATA
128 AAGAAATAAGATCCATTAGTTGTAGAGAATTACAAACAAATATCAAATCAAATCAAACACTCATA
* * * *
7678978 ACTAATACCCATAGACCCTCTAATCT-TTTTTAGTTATTCTTAACCTAAAC---CATGTAT--A-
193 ACTAATACCCATAGACCCTCTAATCTCCTTCTAGTTATTCTTAACCCAAACAAACATATATCCAT
* * * * * * *
7679036 --T-CCTATCAACACAACCAAACACATGCTCATATGCACCCATACATTATACCTATATGGACCCT
258 TGTACCTTTCAACACAACCAAACACATACCCATATACATCCATATA-TATACCTATGTGGACCCT
* * * * * * *
7679098 CTCAATCTCCTCTAATTCACTCCCAAACATTTAAACATATACACCCATAAAATATAAATCTCTAG
322 CTCAATCTCTTCTAGTTCACTCTCAAACATTCAAACATATACA-CTATAAGACATAAATCTCTAG
* *
7679163 TATTCTTATATGA--TATCTATCTTATAAAACTCTACAACTCTCTTGCATCTTTTTCTCATACCT
386 TATT-TT-TATGAGGTGTCTATCTTATAAAACT-TACAACTCTCTTACATCTTTTTCTCATACCT
* * * *
7679226 AACTCTATAAAGACTTCACCTATTTATAACCATACATATTTGCCTATTAAGAATTCATTTCCTCT
448 AA-TCTATAGAGACTTCACCTATTTATAACCATACATACTTGCCTATTAAGAATCCATTTTCTCT
* * * * * * * *
7679291 TAAAATTTTTTTTTTGCAAGTCAAACTTGTCAATTAAAAATCTATTTTTTTTAAGATTCTTCTTC
512 T-AAATTTTTTTTTTGCAAGTTAAACTTGCCTATTAAGAATCTTTTTTTTTTAAAATTCTTTTTT
* * * *
7679356 TCCAAGTCTTCTTGTCCATCAAGCAATAGCTACCCAATCCCAAACAAATCTCTTATAGGATTTGA
576 TACAAGTCTTCTTGTCCATCAAGCAATATCTGCACAATCCCAAACAAATCTCTTATAGGATTTGA
*
7679421 GTCATAATTCCTA
641 GTCATTATTCCTA
7679434 GCATGAGGTG
Statistics
Matches: 1349, Mismatches: 181, Indels: 94
0.83 0.11 0.06
Matches are distributed among these distances:
911 7 0.01
912 47 0.03
913 400 0.30
914 2 0.00
915 1 0.00
919 2 0.00
920 206 0.15
921 127 0.09
922 11 0.01
925 1 0.00
926 3 0.00
927 2 0.00
928 6 0.00
929 5 0.00
930 5 0.00
931 42 0.03
932 445 0.33
933 37 0.03
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.35
Consensus pattern (925 bp):
TGATATCACTTGTTGGGCAAAAAGTCTCAATCCAATCAAGCAACGAAAGTGAAATCAAATAATCA
ATCAATCATATAAGAGATAACAATTTAACATGGTTTGATTCAACTAACTTACGTCCACAAATAAG
AAATAAGATCCATTAGTTGTAGAGAATTACAAACAAATATCAAATCAAATCAAACACTCATAACT
AATACCCATAGACCCTCTAATCTCCTTCTAGTTATTCTTAACCCAAACAAACATATATCCATTGT
ACCTTTCAACACAACCAAACACATACCCATATACATCCATATATATACCTATGTGGACCCTCTCA
ATCTCTTCTAGTTCACTCTCAAACATTCAAACATATACACTATAAGACATAAATCTCTAGTATTT
TTATGAGGTGTCTATCTTATAAAACTTACAACTCTCTTACATCTTTTTCTCATACCTAATCTATA
GAGACTTCACCTATTTATAACCATACATACTTGCCTATTAAGAATCCATTTTCTCTTAAATTTTT
TTTTTGCAAGTTAAACTTGCCTATTAAGAATCTTTTTTTTTTAAAATTCTTTTTTTACAAGTCTT
CTTGTCCATCAAGCAATATCTGCACAATCCCAAACAAATCTCTTATAGGATTTGAGTCATTATTC
CTAACAATCTCCACCTTAACTCAAATTCTATCAAATCATCTATTTTCATGCTAGACATACTTAGC
TTCACCTGCAATAGAAGTCTCACAATCATCTTTTCTTGTAAGTTTTCACATTTCATGCAAACTAA
TCCTCAATTCTCAAAACTTGAACTCAAACTCTTCTCTTGAATTGAGCTCATCTAGGCTTGCATCT
TCCCATGTCTCGAACCTTCAGCTCTTTTCACATCTCAAACATTCAACTCTGATACCACTTGTTAA
GGATCACCACAGCTT
Found at i:7681926 original size:21 final size:21
Alignment explanation
Indices: 7681900--7681986 Score: 74
Period size: 20 Copynumber: 4.1 Consensus size: 21
7681890 TCATGTAAAC
7681900 AATATAATGCAATAATAATAT
1 AATATAATGCAATAATAATAT
7681921 AATATATCATGCAATAATAATA-
1 AATATA--ATGCAATAATAATAT
* *
7681943 AACTATCATACAATAAT-AT-T
1 AA-TATAATGCAATAATAATAT
* *
7681963 AATTATCATGCAATTA-AATAT
1 AA-TATAATGCAATAATAATAT
7681984 AAT
1 AAT
7681987 CATGCAATTA
Statistics
Matches: 55, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
20 18 0.33
21 18 0.33
22 2 0.04
23 17 0.31
ACGTcount: A:0.53, C:0.09, G:0.03, T:0.34
Consensus pattern (21 bp):
AATATAATGCAATAATAATAT
Found at i:7681942 original size:18 final size:20
Alignment explanation
Indices: 7681906--7681976 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
7681896 AAACAATATA
*
7681906 ATGCAATAATAATATAATATATC
1 ATGCAATAAT-A-ATAA-CTATC
7681929 ATGCAATAATAATAAACTATC
1 ATGCAATAATAAT-AACTATC
* * *
7681950 ATACAATAATATTAATTATC
1 ATGCAATAATAATAACTATC
7681970 ATGCAAT
1 ATGCAAT
7681977 TAAATATAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
20 12 0.29
21 17 0.40
22 3 0.07
23 10 0.24
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.34
Consensus pattern (20 bp):
ATGCAATAATAATAACTATC
Found at i:7686912 original size:16 final size:16
Alignment explanation
Indices: 7686891--7686921 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7686881 AATTTACTTT
7686891 AATTTATTTTATATTG
1 AATTTATTTTATATTG
*
7686907 AATTTATTTTTTATT
1 AATTTATTTTATATT
7686922 TTTTGTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (16 bp):
AATTTATTTTATATTG
Found at i:7686919 original size:7 final size:7
Alignment explanation
Indices: 7686909--7686969 Score: 54
Period size: 7 Copynumber: 8.9 Consensus size: 7
7686899 TTATATTGAA
7686909 TTTATTT
1 TTTATTT
7686916 TTTATTT
1 TTTATTT
*
7686923 TTTGTTT
1 TTTATTT
*
7686930 TTAATTT
1 TTTATTT
*
7686937 TTAATTT
1 TTTATTT
*
7686944 TAGT-TTT
1 T-TTATTT
*
7686951 TTTA-AT
1 TTTATTT
7686957 TTTATTT
1 TTTATTT
7686964 TTTATT
1 TTTATT
7686970 AGATAAATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
6 6 0.14
7 37 0.86
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (7 bp):
TTTATTT
Found at i:7686952 original size:15 final size:14
Alignment explanation
Indices: 7686934--7686966 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
7686924 TTGTTTTTAA
7686934 TTTTTAATTTTAGTT
1 TTTTTAATTTTA-TT
7686949 TTTTTAATTTTATT
1 TTTTTAATTTTATT
7686963 TTTT
1 TTTT
7686967 ATTAGATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTTTAATTTTATT
Found at i:7686967 original size:13 final size:13
Alignment explanation
Indices: 7686915--7686967 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
7686905 TGAATTTATT
**
7686915 TTTTATTTTTTGT
1 TTTTATTTTTTAA
*
7686928 TTTTAATTTTTAA
1 TTTTATTTTTTAA
7686941 TTTTAGTTTTTTTAA
1 TTTTA--TTTTTTAA
7686956 TTTTATTTTTTA
1 TTTTATTTTTTA
7686968 TTAGATAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
13 22 0.65
15 12 0.35
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (13 bp):
TTTTATTTTTTAA
Found at i:7687842 original size:23 final size:21
Alignment explanation
Indices: 7687791--7687842 Score: 52
Period size: 23 Copynumber: 2.3 Consensus size: 21
7687781 TATATCAAAG
7687791 AATATATTTTATTATTTGTTT
1 AATATATTTTATTATTTGTTT
7687812 AATTTATATTTATATATATTTGTATT
1 AA--TATATTT-TAT-TATTTGT-TT
7687838 -ATATA
1 AATATA
7687843 ATAAAAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
21 2 0.08
23 11 0.42
24 3 0.12
25 8 0.31
26 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
AATATATTTTATTATTTGTTT
Found at i:7697142 original size:17 final size:15
Alignment explanation
Indices: 7697110--7697144 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 15
7697100 GTCTGATTTC
7697110 ATTATTATAAGTATA
1 ATTATTATAAGTATA
7697125 ATTATTATATAGTAATA
1 ATTATTATA-AGT-ATA
7697142 ATT
1 ATT
7697145 TTAGAGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
16 3 0.17
17 6 0.33
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (15 bp):
ATTATTATAAGTATA
Found at i:7697284 original size:21 final size:22
Alignment explanation
Indices: 7697258--7697308 Score: 70
Period size: 23 Copynumber: 2.4 Consensus size: 22
7697248 ATTTAAAATT
*
7697258 TAATTTAAT-TAATATATATAA
1 TAATTTAATCTAATAAATATAA
7697279 TAATTTATATCTAATAAATATAA
1 TAATTTA-ATCTAATAAATATAA
7697302 -AATTTAA
1 TAATTTAA
7697309 ATTATAACGC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
21 8 0.30
22 8 0.30
23 11 0.41
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATTTAATCTAATAAATATAA
Found at i:7701370 original size:19 final size:20
Alignment explanation
Indices: 7701346--7701389 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
7701336 TAACCAAATT
7701346 ATAATTCTAATA-TTTTAAA
1 ATAATTCTAATACTTTTAAA
* *
7701365 ATAATTTTAATACTTTTATA
1 ATAATTCTAATACTTTTAAA
7701385 ATAAT
1 ATAAT
7701390 AAAATTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (20 bp):
ATAATTCTAATACTTTTAAA
Found at i:7703181 original size:24 final size:23
Alignment explanation
Indices: 7703135--7703198 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
7703125 TAAGTTAGTA
*
7703135 ATGATTTACTATTATATATTATC
1 ATGATTTACTATTAAATATTATC
*
7703158 GATGATTTACTACTAAAT-TATATC
1 -ATGATTTACTATTAAATAT-TATC
*
7703182 ACTAATTTACTATTAAA
1 A-TGATTTACTATTAAA
7703199 ATATGAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
23 2 0.06
24 32 0.94
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (23 bp):
ATGATTTACTATTAAATATTATC
Found at i:7703285 original size:17 final size:17
Alignment explanation
Indices: 7703263--7703295 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7703253 TTTATTATAA
*
7703263 GTTATCATTAATTTATT
1 GTTATCACTAATTTATT
7703280 GTTATCACTAATTTAT
1 GTTATCACTAATTTAT
7703296 AATTAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.09, G:0.06, T:0.55
Consensus pattern (17 bp):
GTTATCACTAATTTATT
Found at i:7703337 original size:22 final size:22
Alignment explanation
Indices: 7703280--7703337 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
7703270 TTAATTTATT
* *
7703280 GTTATCACTAATTTATAATTAA
1 GTTATCAATAAATTATAATTAA
* * *
7703302 ATTAT-AACTGAATTATCATTAA
1 GTTATCAA-TAAATTATAATTAA
7703324 GTTATCAATAAATT
1 GTTATCAATAAATT
7703338 CGACTAAGTT
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
21 1 0.04
22 24 0.89
23 2 0.07
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (22 bp):
GTTATCAATAAATTATAATTAA
Found at i:7703473 original size:22 final size:22
Alignment explanation
Indices: 7703448--7703497 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
7703438 ATAAAAAAAC
7703448 TTATCATCGATTGATAACTAAG
1 TTATCATCGATTGATAACTAAG
* * * * *
7703470 TTATCGTGGATTTATTACTATG
1 TTATCATCGATTGATAACTAAG
7703492 TTATCA
1 TTATCA
7703498 GTAATTTATT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (22 bp):
TTATCATCGATTGATAACTAAG
Found at i:7703526 original size:22 final size:22
Alignment explanation
Indices: 7703501--7703569 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
7703491 GTTATCAGTA
*
7703501 ATTTATTATTAAATTATCAAAG
1 ATTTACTATTAAATTATCAAAG
* * *
7703523 ATTTACTATTAAGTTATGAAAT
1 ATTTACTATTAAATTATCAAAG
** *
7703545 ATTTACTACAAAATTATCAATG
1 ATTTACTATTAAATTATCAAAG
7703567 ATT
1 ATT
7703570 AATTAATTTA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.43, C:0.07, G:0.06, T:0.43
Consensus pattern (22 bp):
ATTTACTATTAAATTATCAAAG
Found at i:7703607 original size:22 final size:22
Alignment explanation
Indices: 7703582--7703633 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
7703572 TTAATTTACT
* *
7703582 ACTAAATTATCATTGATATACA
1 ACTAAATTATAAGTGATATACA
* *
7703604 ACTAAATTATAAGTGATTTACT
1 ACTAAATTATAAGTGATATACA
7703626 ACTAAATT
1 ACTAAATT
7703634 CAATGATTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.44, C:0.12, G:0.06, T:0.38
Consensus pattern (22 bp):
ACTAAATTATAAGTGATATACA
Found at i:7703737 original size:22 final size:22
Alignment explanation
Indices: 7703710--7703788 Score: 95
Period size: 22 Copynumber: 3.5 Consensus size: 22
7703700 AATTAGCTAT
7703710 TAAGTTATCAATTATTTACTAC
1 TAAGTTATCAATTATTTACTAC
*
7703732 TAAGTTATCAATTGAATTACTAC
1 TAAGTTATCAATT-ATTTACTAC
** * *
7703755 TAAGTTATTTATGATTTACTAT
1 TAAGTTATCAATTATTTACTAC
*
7703777 TAATTTATCAAT
1 TAAGTTATCAAT
7703789 AAATTACAAT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
22 29 0.62
23 18 0.38
ACGTcount: A:0.37, C:0.10, G:0.06, T:0.47
Consensus pattern (22 bp):
TAAGTTATCAATTATTTACTAC
Found at i:7703772 original size:45 final size:46
Alignment explanation
Indices: 7703700--7703788 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 46
7703690 ACAATTTAAC
* *
7703700 AATTAGCTATTAAGTTATCAATTATTTACTACTAAGTTATCAATTG
1 AATTAGCTACTAAGTTATCAATGATTTACTACTAAGTTATCAATTG
** * *
7703746 AATTA-CTACTAAGTTATTTATGATTTACTATTAATTTATCAAT
1 AATTAGCTACTAAGTTATCAATGATTTACTACTAAGTTATCAAT
7703789 AAATTACAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 32 0.86
46 5 0.14
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (46 bp):
AATTAGCTACTAAGTTATCAATGATTTACTACTAAGTTATCAATTG
Found at i:7703795 original size:22 final size:22
Alignment explanation
Indices: 7703700--7703795 Score: 93
Period size: 22 Copynumber: 4.3 Consensus size: 22
7703690 ACAATTTAAC
* *
7703700 AATTAGCTATTAAGTTATCAATT
1 AATTA-CTACTAAGTTATCAATG
*
7703723 ATTTACTACTAAGTTATCAATTG
1 AATTACTACTAAGTTATCAA-TG
**
7703746 AATTACTACTAAGTTATTTATG
1 AATTACTACTAAGTTATCAATG
* * * *
7703768 ATTTACTATTAATTTATCAATA
1 AATTACTACTAAGTTATCAATG
7703790 AATTAC
1 AATTAC
7703796 AATATATGAA
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
22 37 0.63
23 22 0.37
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (22 bp):
AATTACTACTAAGTTATCAATG
Found at i:7704099 original size:22 final size:22
Alignment explanation
Indices: 7704074--7704153 Score: 106
Period size: 22 Copynumber: 3.6 Consensus size: 22
7704064 TATCACTAAG
*
7704074 TTATAGATGATTTACTATTAAA
1 TTATAGATAATTTACTATTAAA
* * *
7704096 TTATAAACAATTTACTACTAAA
1 TTATAGATAATTTACTATTAAA
* *
7704118 TTATTGATAATTTACTATTAAG
1 TTATAGATAATTTACTATTAAA
7704140 TTATAGATAATTTA
1 TTATAGATAATTTA
7704154 TTATAAAGTT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.45
Consensus pattern (22 bp):
TTATAGATAATTTACTATTAAA
Found at i:7704108 original size:44 final size:45
Alignment explanation
Indices: 7704037--7704154 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 45
7704027 ATCTTATCAC
* * * * *
7704037 TGATTTACAACTAAATTATCATTAATTTATC-ACTAAGTTATAGA
1 TGATTTACTATTAAATTATAAATAATTTATCTACTAAATTATAGA
* *
7704081 TGATTTACTATTAAATTATAAACAATTTA-CTACTAAATTATTGA
1 TGATTTACTATTAAATTATAAATAATTTATCTACTAAATTATAGA
* * *
7704125 TAATTTACTATTAAGTTATAGATAATTTAT
1 TGATTTACTATTAAATTATAAATAATTTAT
7704155 TATAAAGTTA
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
43 1 0.02
44 60 0.98
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (45 bp):
TGATTTACTATTAAATTATAAATAATTTATCTACTAAATTATAGA
Found at i:7704162 original size:22 final size:22
Alignment explanation
Indices: 7704071--7704222 Score: 105
Period size: 22 Copynumber: 6.9 Consensus size: 22
7704061 ATTTATCACT
*
7704071 AAGTTATAGATGATTTACTATTA
1 AAGTTATAGATAATTTACTA-TA
* *
7704094 AA-TTATAAACAATTTACTACTA
1 AAGTTATAGATAATTTACTA-TA
* *
7704116 AA-TTATTGATAATTTACTATT
1 AAGTTATAGATAATTTACTATA
*
7704137 AAGTTATAGATAATTTATTATA
1 AAGTTATAGATAATTTACTATA
* * *
7704159 AAGTTATTA-CTAATTTATTATG
1 AAGTTA-TAGATAATTTACTATA
* * * * *
7704181 AAGTTTTTGATGATTTAGTATG
1 AAGTTATAGATAATTTACTATA
*
7704203 AAGTTATTA-ATAATTAACTA
1 AAGTTA-TAGATAATTTACTA
7704223 ATTTACAATT
Statistics
Matches: 102, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
21 4 0.04
22 93 0.91
23 5 0.05
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (22 bp):
AAGTTATAGATAATTTACTATA
Found at i:7704166 original size:44 final size:44
Alignment explanation
Indices: 7704071--7704222 Score: 137
Period size: 44 Copynumber: 3.5 Consensus size: 44
7704061 ATTTATCACT
* * * * *
7704071 AAGTTATAGATGATTTACTATTAAATTATAAACAATTTACTACTA
1 AAGTTATTGATAATTTACTATTAAGTTATAGATAATTTACTA-TA
*
7704116 AA-TTATTGATAATTTACTATTAAGTTATAGATAATTTATTATA
1 AAGTTATTGATAATTTACTATTAAGTTATAGATAATTTACTATA
* * * * * * *
7704159 AAGTTATT-ACTAATTTATTATGAAGTTTTTGATGATTTAGTATG
1 AAGTTATTGA-TAATTTACTATTAAGTTATAGATAATTTACTATA
* *
7704203 AAGTTATTAATAATTAACTA
1 AAGTTATTGATAATTTACTA
7704223 ATTTACAATT
Statistics
Matches: 89, Mismatches: 15, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
43 5 0.06
44 81 0.91
45 3 0.03
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (44 bp):
AAGTTATTGATAATTTACTATTAAGTTATAGATAATTTACTATA
Found at i:7704174 original size:66 final size:66
Alignment explanation
Indices: 7704030--7704175 Score: 156
Period size: 66 Copynumber: 2.2 Consensus size: 66
7704020 TATTACTATC
* * *
7704030 TTATCACTGATTTACAACTAAATTATCATTAATTTATCACTAAGTTATAGATGATTTACTATTAA
1 TTATAACTAATTTACAACTAAATTATCATTAATTTATCACTAAGTTATAGATAATTTACTATTAA
7704095 A
66 A
* * * *
7704096 TTATAAAC-AATTTACTACTAAATTATTGA-TAATTTA-CTATTAAGTTATAGATAATTTATTA-
1 TTAT-AACTAATTTACAACTAAATTA-TCATTAATTTATC-ACTAAGTTATAGATAATTTACTAT
7704157 TAAA
63 TAAA
*
7704161 GTTATTACTAATTTA
1 -TTATAACTAATTTA
7704176 TTATGAAGTT
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
65 7 0.10
66 56 0.84
67 4 0.06
ACGTcount: A:0.41, C:0.09, G:0.05, T:0.45
Consensus pattern (66 bp):
TTATAACTAATTTACAACTAAATTATCATTAATTTATCACTAAGTTATAGATAATTTACTATTAA
A
Found at i:7704246 original size:22 final size:22
Alignment explanation
Indices: 7704221--7704360 Score: 111
Period size: 22 Copynumber: 6.4 Consensus size: 22
7704211 AATAATTAAC
* *
7704221 TAATTTACAATTAAATTATCAT
1 TAATTTACAACTAAATTATCAA
* *
7704243 TAATTTATAACTAAATTATCAC
1 TAATTTACAACTAAATTATCAA
* **
7704265 TAATTTACAGCTATGTTATCAA
1 TAATTTACAACTAAATTATCAA
* * * * *
7704287 TGATTTACTA-TGACATTATTAG
1 TAATTTACAACT-AAATTATCAA
* *
7704309 TGATTTACTACTAAATTATCAA
1 TAATTTACAACTAAATTATCAA
* *
7704331 TAATTTACTATTAAATTATCAA
1 TAATTTACAACTAAATTATCAA
*
7704353 CAATTTAC
1 TAATTTAC
7704361 TATATACTAT
Statistics
Matches: 95, Mismatches: 21, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
21 1 0.01
22 93 0.98
23 1 0.01
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.43
Consensus pattern (22 bp):
TAATTTACAACTAAATTATCAA
Found at i:7704305 original size:44 final size:44
Alignment explanation
Indices: 7704219--7704362 Score: 125
Period size: 44 Copynumber: 3.3 Consensus size: 44
7704209 TTAATAATTA
* * *
7704219 ACTAATTTACAATTAAATTATCATTAATTTA-TAACT-AAATTATC
1 ACTAATTTACTACTAAATTATCAATAATTTACT-A-TGAAATTATC
** * * *
7704263 ACTAATTTAC-AGCTATGTTATCAATGATTTACTATGACATTATT
1 ACTAATTTACTA-CTAAATTATCAATAATTTACTATGAAATTATC
* * *
7704307 AGTGATTTACTACTAAATTATCAATAATTTACTATTAAATTATC
1 ACTAATTTACTACTAAATTATCAATAATTTACTATGAAATTATC
7704351 AAC-AATTTACTA
1 -ACTAATTTACTA
7704363 TATACTATTA
Statistics
Matches: 78, Mismatches: 17, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
43 2 0.03
44 73 0.94
45 3 0.04
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.42
Consensus pattern (44 bp):
ACTAATTTACTACTAAATTATCAATAATTTACTATGAAATTATC
Found at i:7704457 original size:22 final size:22
Alignment explanation
Indices: 7704439--7704481 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7704429 AAATTATCAT
* *
7704439 TGATTTATTGCTAAGTTATTTA
1 TGATTTACTGCTAAGTTATATA
7704461 TGATTTACTGCTAAGTT-TATA
1 TGATTTACTGCTAAGTTATATA
7704482 ATTTAATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 3 0.16
22 16 0.84
ACGTcount: A:0.28, C:0.07, G:0.14, T:0.51
Consensus pattern (22 bp):
TGATTTACTGCTAAGTTATATA
Found at i:7704667 original size:21 final size:21
Alignment explanation
Indices: 7704604--7704672 Score: 59
Period size: 22 Copynumber: 3.2 Consensus size: 21
7704594 TTATTTTTTT
* *
7704604 ATTAAGTTATCATTAATTTACA
1 ATTATGTTAT-ATTGATTTACA
* *
7704626 ACTATGCTAT-TATGCATTTACA
1 ATTATGTTATAT-TG-ATTTACA
*
7704648 ATTATGTTATATTGATTTACT
1 ATTATGTTATATTGATTTACA
7704669 ATTA
1 ATTA
7704673 AATTATTATG
Statistics
Matches: 37, Mismatches: 7, Indels: 7
0.73 0.14 0.14
Matches are distributed among these distances:
20 1 0.03
21 11 0.30
22 24 0.65
23 1 0.03
ACGTcount: A:0.35, C:0.10, G:0.07, T:0.48
Consensus pattern (21 bp):
ATTATGTTATATTGATTTACA
Found at i:7704693 original size:22 final size:21
Alignment explanation
Indices: 7704662--7704790 Score: 96
Period size: 22 Copynumber: 5.8 Consensus size: 21
7704652 TGTTATATTG
*
7704662 ATTTACTATTAAATTATTATGC
1 ATTTACTATTAAATTATTAT-A
* *
7704684 ATTTATTATTATATTATTATTA
1 ATTTACTATTAAATTATTA-TA
* * * *
7704706 ATTTACTACTAAGTTATCAATT
1 ATTTACTATTAAATTAT-TATA
*
7704728 ATTTACTATTAAATTATTATTG
1 ATTTACTATTAAATTATTA-TA
* * *
7704750 ATATACTATTAAGTTATCACTA
1 ATTTACTATTAAATTATTA-TA
7704772 ATTTACTATACTAAATTAT
1 ATTTACTAT--TAAATTAT
7704791 CACTGATTAA
Statistics
Matches: 82, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
21 1 0.01
22 72 0.88
23 2 0.02
24 7 0.09
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.50
Consensus pattern (21 bp):
ATTTACTATTAAATTATTATA
Found at i:7704732 original size:44 final size:44
Alignment explanation
Indices: 7704684--7704833 Score: 133
Period size: 44 Copynumber: 3.4 Consensus size: 44
7704674 ATTATTATGC
* * *
7704684 ATTTATTATTATATTATTATTAATTTACTACTAAGTTATCAATT
1 ATTTACTATTAAATTATTATTAATATACTACTAAGTTATCAATT
* * * *
7704728 ATTTACTATTAAATTATTATTGATATACTATTAAGTTATCACTA
1 ATTTACTATTAAATTATTATTAATATACTACTAAGTTATCAATT
* * * * * *
7704772 ATTTACTATACTAAATTATCACTGAT-TAACTATTAATTTATCAATG
1 ATTTACTAT--TAAATTATTATTAATAT-ACTACTAAGTTATCAATT
*
7704818 A-TTACTATTAAGTTAT
1 ATTTACTATTAAATTAT
7704834 ATTGATTTAT
Statistics
Matches: 90, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
43 7 0.08
44 46 0.51
45 8 0.09
46 29 0.32
ACGTcount: A:0.38, C:0.09, G:0.04, T:0.49
Consensus pattern (44 bp):
ATTTACTATTAAATTATTATTAATATACTACTAAGTTATCAATT
Found at i:7704804 original size:46 final size:44
Alignment explanation
Indices: 7704709--7704833 Score: 137
Period size: 46 Copynumber: 2.8 Consensus size: 44
7704699 ATTATTAATT
* * * *
7704709 TACTACTAAGTTATCAATTATTTACTATTAAATTATTATTGATA
1 TACTATTAAGTTATCAATAATTTACTATTAAATTATCACTGATA
*
7704753 TACTATTAAGTTATCACTAATTTACTATACTAAATTATCACTGAT-
1 TACTATTAAGTTATCAATAATTTACTAT--TAAATTATCACTGATA
* * *
7704798 TAACTATTAATTTATCAATGA-TTACTATTAAGTTAT
1 T-ACTATTAAGTTATCAATAATTTACTATTAAATTAT
7704834 ATTGATTTAT
Statistics
Matches: 69, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
43 7 0.10
44 25 0.36
45 8 0.12
46 29 0.42
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (44 bp):
TACTATTAAGTTATCAATAATTTACTATTAAATTATCACTGATA
Found at i:7704819 original size:22 final size:22
Alignment explanation
Indices: 7704710--7704833 Score: 99
Period size: 22 Copynumber: 5.6 Consensus size: 22
7704700 TTATTAATTT
* * *
7704710 ACTACTAAGTTATCAATTATTT
1 ACTATTAAGTTATCAATGATTA
* * *
7704732 ACTATTAAATTATTATTGA-TA
1 ACTATTAAGTTATCAATGATTA
* * *
7704753 TACTATTAAGTTATCACTAATTT
1 -ACTATTAAGTTATCAATGATTA
* *
7704776 ACTATACTAAATTATCACTGATTA
1 ACTAT--TAAGTTATCAATGATTA
*
7704800 ACTATTAATTTATCAATGATT-
1 ACTATTAAGTTATCAATGATTA
7704821 ACTATTAAGTTAT
1 ACTATTAAGTTAT
7704834 ATTGATTTAT
Statistics
Matches: 81, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
21 13 0.16
22 48 0.59
23 1 0.01
24 19 0.23
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (22 bp):
ACTATTAAGTTATCAATGATTA
Found at i:7705248 original size:22 final size:22
Alignment explanation
Indices: 7705223--7705547 Score: 116
Period size: 22 Copynumber: 14.9 Consensus size: 22
7705213 ACTGAATCTT
*
7705223 ATTTACTATTAACTTATTATTA
1 ATTTACTATTAAGTTATTATTA
* * * *
7705245 ATTTATTACTAAGTTATCATTG
1 ATTTACTATTAAGTTATTATTA
*
7705267 ATTTACTATTAAGTTATCACTTA
1 ATTTACTATTAAGTTATTA-TTA
* ** **
7705290 CTTT--TATTAAACTATCCTTA
1 ATTTACTATTAAGTTATTATTA
* *
7705310 ATTTACTACTTTA-TTTTTATGT-
1 ATTTACTA-TTAAGTTATTAT-TA
* * * *
7705332 ATTTACAATTATG-TATAAATA
1 ATTTACTATTAAGTTATTATTA
*
7705353 ATTTACTATTAAGTTATT-TGTT
1 ATTTACTATTAAGTTATTAT-TA
7705375 ATTTACTATTATA-TTATTATGT-
1 ATTTACTATTA-AGTTATTAT-TA
* * *** *
7705397 ATTTATTATTATGTTATCCCTG
1 ATTTACTATTAAGTTATTATTA
** ** *
7705419 ACATAC-ATCTATCTTATCAATT-
1 ATTTACTAT-TAAGTTAT-TATTA
* *
7705441 ATTTACTATTAAATTATTATTT
1 ATTTACTATTAAGTTATTATTA
* *
7705463 ATTTACTATTATGTTATTAATA
1 ATTTACTATTAAGTTATTATTA
* *
7705485 ATTTACTAATAAGTTATCCA-TA
1 ATTTACTATTAAGTTAT-TATTA
* * *
7705507 ATTTAATA-TATAGTTATCATTG
1 ATTTACTATTA-AGTTATTATTA
* *
7705529 ATTTAATATAAAGTTATTA
1 ATTTACTATTAAGTTATTA
7705548 CTGGTATTGT
Statistics
Matches: 225, Mismatches: 57, Indels: 42
0.69 0.18 0.13
Matches are distributed among these distances:
20 7 0.03
21 36 0.16
22 164 0.73
23 18 0.08
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52
Consensus pattern (22 bp):
ATTTACTATTAAGTTATTATTA
Found at i:7705403 original size:14 final size:15
Alignment explanation
Indices: 7705381--7705410 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
7705371 TGTTATTTAC
7705381 TATTATATTATTATG
1 TATTATATTATTATG
7705396 TATT-TATTATTATG
1 TATTATATTATTATG
7705410 T
1 T
7705411 TATCCCTGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (15 bp):
TATTATATTATTATG
Found at i:7705489 original size:44 final size:44
Alignment explanation
Indices: 7705223--7705501 Score: 140
Period size: 44 Copynumber: 6.4 Consensus size: 44
7705213 ACTGAATCTT
* * * * * * * *
7705223 ATTTACTATTAACTTATTATTAATTTATTACTAAGTTATCATTG
1 ATTTACTATTAAGTTATTATTTATTTACTATTATGTTATTAATA
* * *** ***
7705267 ATTTACTATTAAGTTATCACTTACTTT--TATTAAACTATCCTTA
1 ATTTACTATTAAGTTATTATTTA-TTTACTATTATGTTATTAATA
* * * * *
7705310 ATTTACTACTTTA-TTTTTATGTATTTACAATTATG-TATAAATA
1 ATTTACTA-TTAAGTTATTATTTATTTACTATTATGTTATTAATA
* *
7705353 ATTTACTATTAAGTTATT-TGTTATTTACTATTATATTATT-ATGT
1 ATTTACTATTAAGTTATTAT-TTATTTACTATTATGTTATTAAT-A
* * *** * ** * * *
7705397 ATTTATTATTATGTTATCCCTGACATAC-ATCTATCTTATCAATT
1 ATTTACTATTAAGTTATTATTTATTTACTAT-TATGTTATTAATA
*
7705441 ATTTACTATTAAATTATTATTTATTTACTATTATGTTATTAATA
1 ATTTACTATTAAGTTATTATTTATTTACTATTATGTTATTAATA
*
7705485 ATTTACTAATAAGTTAT
1 ATTTACTATTAAGTTAT
7705502 CCATAATTTA
Statistics
Matches: 173, Mismatches: 50, Indels: 24
0.70 0.20 0.10
Matches are distributed among these distances:
42 7 0.04
43 58 0.34
44 101 0.58
45 7 0.04
ACGTcount: A:0.33, C:0.10, G:0.04, T:0.53
Consensus pattern (44 bp):
ATTTACTATTAAGTTATTATTTATTTACTATTATGTTATTAATA
Found at i:7705502 original size:66 final size:66
Alignment explanation
Indices: 7705326--7705511 Score: 169
Period size: 66 Copynumber: 2.8 Consensus size: 66
7705316 TACTTTATTT
* * *** *
7705326 TTATGTATTTACAATTATG-TATAAATAATTTACTATTAAGTTATTTGTTATTTACTATTATATT
1 TTATGTATTTACTATTATGTTATAAATAATTTACTAATAAGTTATCAATTATTTACTATTAAATT
7705390 A
66 A
* *** * ** * **
7705391 TTATGTATTTATTATTATGTTATCCCTGACATAC-ATCTATCTTATCAATTATTTACTATTAAAT
1 TTATGTATTTACTATTATGTTATAAATAATTTACTA-ATAAGTTATCAATTATTTACTATTAAAT
7705455 TA
65 TA
* * * *
7705457 TTATTTATTTACTATTATGTTATTAATAATTTACTAATAAGTTATCCATAATTTA
1 TTATGTATTTACTATTATGTTATAAATAATTTACTAATAAGTTATCAATTATTTA
7705512 ATATATAGTT
Statistics
Matches: 90, Mismatches: 28, Indels: 5
0.73 0.23 0.04
Matches are distributed among these distances:
65 18 0.20
66 71 0.79
67 1 0.01
ACGTcount: A:0.34, C:0.09, G:0.05, T:0.52
Consensus pattern (66 bp):
TTATGTATTTACTATTATGTTATAAATAATTTACTAATAAGTTATCAATTATTTACTATTAAATT
A
Found at i:7708488 original size:24 final size:24
Alignment explanation
Indices: 7708449--7708495 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7708439 TTTAATGTAG
7708449 TTTAATTTGATATAAATTTTAAATT
1 TTTAATTTGATATAAA-TTTAAATT
*
7708474 TTTAA-TTGATTTAAATTTAAAT
1 TTTAATTTGATATAAATTTAAAT
7708496 AAGTAATGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 9 0.43
25 5 0.24
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.55
Consensus pattern (24 bp):
TTTAATTTGATATAAATTTAAATT
Found at i:7709801 original size:5 final size:5
Alignment explanation
Indices: 7709793--7709818 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7709783 GTGTTAGCAA
7709793 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
7709819 TCTAATAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7713953 original size:183 final size:185
Alignment explanation
Indices: 7713755--7714091 Score: 490
Period size: 184 Copynumber: 1.8 Consensus size: 185
7713745 GCTTTTGTAC
***
7713755 AAGGAAAATTTGATACTTTCAACT-TTTTTTCAAAAATATTCTTTT-GAAAC-TTTAATTTCGAG
1 AAGGAAAATTTGATACTTTCAACTATTCCCT-AAAAATATT-TTTTGGAAACTTTTAATTTCGAG
*** *
7713817 AAAAATTGATACTTTCAAC-TTTCTCTCAAAACCTCTTTTTTTTGGAAATTTTACTT-TTAAGAA
64 AAAAATTGATACTTTCAACTTTTC-CTCAAAAAAACTTTTTTTT-GAAAATTTA-TTCTTAAGAA
*
7713880 AAATTGATACTTTCAA-CTTTTCCTAAAAAAAAAAAACCTTTTTTTGAAAATTTATTCTT
126 AAATTGATACTTTCAACCTTTCCCTAAAAAAAAAAAACCTTTTTTTGAAAATTTATTCTT
*
7713939 AAGGAAAA-TTGATACTTTCAACTATTCCCTAAAAATATTTTTTGGAAACTTTTAATTTCGAGGA
1 AAGGAAAATTTGATACTTTCAACTATTCCCTAAAAATATTTTTTGGAAACTTTTAATTTCGAGAA
*
7714003 AAATTGATACTTTCAACTTTTCCTCAAAAAAACTTTTTTTTGAAAATTTATTCTTAAGGAAAATT
66 AAATTGATACTTTCAACTTTTCCTCAAAAAAACTTTTTTTTGAAAATTTATTCTTAAGAAAAATT
7714068 GATACTTTCAACCTTTCCCTAAAA
131 GATACTTTCAACCTTTCCCTAAAA
7714092 TGTTTTTTTT
Statistics
Matches: 137, Mismatches: 10, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
182 6 0.04
183 59 0.43
184 68 0.50
185 4 0.03
ACGTcount: A:0.37, C:0.14, G:0.07, T:0.42
Consensus pattern (185 bp):
AAGGAAAATTTGATACTTTCAACTATTCCCTAAAAATATTTTTTGGAAACTTTTAATTTCGAGAA
AAATTGATACTTTCAACTTTTCCTCAAAAAAACTTTTTTTTGAAAATTTATTCTTAAGAAAAATT
GATACTTTCAACCTTTCCCTAAAAAAAAAAAACCTTTTTTTGAAAATTTATTCTT
Found at i:7714100 original size:60 final size:57
Alignment explanation
Indices: 7713755--7714102 Score: 252
Period size: 61 Copynumber: 5.8 Consensus size: 57
7713745 GCTTTTGTAC
*** * * * *
7713755 AAGGAAAATTTGATACTTTCAACTTTTTTTCAAAAATATTCTTTTGAAACTTTAATT-TC
1 AAGGAAAA-TTGATACTTTCAACTTTCCCT-AAAAATTTTTTTTTGAAAATTT-ATTCTT
* * * * *
7713814 GAGAAAAATTGATACTTTCAACTTTCTCTCAAAACCTCTTTTTTTTGGAAATTTTACTT-TT
1 AAGGAAAATTGATACTTTCAACTTTCCCT-AAAA-AT-TTTTTTTT-GAAAATTTA-TTCTT
* * **
7713875 AAGAAAAATTGATACTTTCAACTTTTCCTAAAAAAAAAAAACCTTTTTTTGAAAATTTATTCTT
1 AAGGAAAATTGATACTTTCAACTTTCCCT-------AAAAATTTTTTTTTGAAAATTTATTCTT
* * * *
7713939 AAGGAAAATTGATACTTTCAACTATTCCCTAAAAATATTTTTTGGAAACTTTTAATT-TC
1 AAGGAAAATTGATACTTTCAACT-TTCCCTAAAAATTTTTTTTTGAAA-ATTT-ATTCTT
* * *
7713998 GAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACTTTTTTTTGAAAATTTATTCTT
1 AAGGAAAATTGATACTTTCAAC-TTTCC-C-TAAAAATTTTTTTTTGAAAATTTATTCTT
*
7714058 AAGGAAAATTGATACTTTCAACCTTTCCCTAAAATGTTTTTTTTT
1 AAGGAAAATTGATACTTTCAA-CTTTCCCTAAAA-ATTTTTTTTT
7714103 AATTTTATTT
Statistics
Matches: 234, Mismatches: 35, Indels: 40
0.76 0.11 0.13
Matches are distributed among these distances:
58 43 0.18
59 48 0.21
60 41 0.18
61 52 0.22
63 2 0.01
64 32 0.14
65 12 0.05
67 4 0.02
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (57 bp):
AAGGAAAATTGATACTTTCAACTTTCCCTAAAAATTTTTTTTTGAAAATTTATTCTT
Found at i:7714100 original size:119 final size:116
Alignment explanation
Indices: 7713754--7714101 Score: 385
Period size: 119 Copynumber: 2.9 Consensus size: 116
7713744 TGCTTTTGTA
** * * * **
7713754 CAAGGAAAATTTGATACTTTCAACTTTTTTTCAAAAATA-TTCTTTTGAAACTTTAATT-TCGAG
1 CAAGGAAAA-TTGATACTTTCAACTTTTCCTCAAAAAAACTTTTTTTGAAAATTT-ATTCTTAAG
* * * *
7713817 AAAAATTGATACTTTCAACTTTCTCTCAAAACCTCTTTTTTTTGGAAATTTTACTTT
64 GAAAATTGATACTTTCAACTTTCCCT-AAAA---ATTTTTTTTGGAAATTTTAATTT
* * *
7713874 TAAGAAAAATTGATACTTTCAACTTTTCCTAAAAAAAAAAAACCTTTTTTTGAAAATTTATTCTT
1 CAAGGAAAATTGATACTTTCAACTTTTCCT----CAAAAAAA-CTTTTTTTGAAAATTTATTCTT
*
7713939 AAGGAAAATTGATACTTTCAACTATTCCCTAAAAATATTTTTTGGAAACTTTTAATTT
61 AAGGAAAATTGATACTTTCAACT-TTCCCTAAAAATTTTTTTTGGAAA-TTTTAATTT
*
7713997 CGAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACTTTTTTTTGAAAATTTATTCTTAAGG
1 CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAAC-TTTTTTTGAAAATTTATTCTTAAGG
*
7714062 AAAATTGATACTTTCAACCTTTCCCTAAAATGTTTTTTTT
65 AAAATTGATACTTTCAA-CTTTCCCTAAAA-ATTTTTTTT
7714102 TAATTTTATT
Statistics
Matches: 195, Mismatches: 21, Indels: 24
0.81 0.09 0.10
Matches are distributed among these distances:
118 1 0.01
119 78 0.40
120 16 0.08
122 12 0.06
123 41 0.21
124 3 0.02
125 39 0.20
126 5 0.03
ACGTcount: A:0.36, C:0.14, G:0.07, T:0.43
Consensus pattern (116 bp):
CAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAACTTTTTTTGAAAATTTATTCTTAAGGA
AAATTGATACTTTCAACTTTCCCTAAAAATTTTTTTTGGAAATTTTAATTT
Found at i:7714168 original size:28 final size:29
Alignment explanation
Indices: 7714112--7714191 Score: 71
Period size: 28 Copynumber: 2.8 Consensus size: 29
7714102 TAATTTTATT
*
7714112 TAAAGAAAATAA-AATAAATATAAA--ATAA
1 TAAA-AAAATAATAATAAATA-AAATCCTAA
7714140 TAAAAAAATGAAT-ATAAA-AAAATCCTAA
1 TAAAAAAAT-AATAATAAATAAAATCCTAA
* *
7714168 TATAATAATAATAATAAATAAAAT
1 TAAAAAAATAATAATAAATAAAAT
7714192 AAAAATAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
26 3 0.07
27 9 0.21
28 26 0.60
29 5 0.12
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.25
Consensus pattern (29 bp):
TAAAAAAATAATAATAAATAAAATCCTAA
Found at i:7714197 original size:11 final size:11
Alignment explanation
Indices: 7714117--7714206 Score: 55
Period size: 11 Copynumber: 8.4 Consensus size: 11
7714107 TTATTTAAAG
7714117 AAAATAAAATA
1 AAAATAAAATA
*
7714128 AATATAAAATA
1 AAAATAAAATA
*
7714139 ATAAA-AAAATG
1 A-AAATAAAATA
*
7714150 AATATAAAA-A
1 AAAATAAAATA
** *
7714160 AATCCTAATATA
1 AA-AATAAAATA
*
7714172 ATAAT--AATA
1 AAAATAAAATA
7714181 ATAAATAAAATA
1 A-AAATAAAATA
7714193 AAAATAAAA-A
1 AAAATAAAATA
7714203 AAAA
1 AAAA
7714207 ACTTGGGAAC
Statistics
Matches: 59, Mismatches: 13, Indels: 15
0.68 0.15 0.17
Matches are distributed among these distances:
9 4 0.07
10 12 0.20
11 34 0.58
12 9 0.15
ACGTcount: A:0.74, C:0.02, G:0.01, T:0.22
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:7722146 original size:42 final size:42
Alignment explanation
Indices: 7722100--7722225 Score: 114
Period size: 42 Copynumber: 3.0 Consensus size: 42
7722090 CTTTTGTGCA
7722100 GGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 GGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
** * **** * *
7722142 GGAAATCTT-A-A-TTTCGACCTTTTTTTTGAAAATTTATTTTTA
1 GGAAAAATTGATACTTTC-AAC-TTTTCCCCAAAA-ATATTTTTT
*
7722184 AGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
1 GGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
7722226 TTGGATTTTA
Statistics
Matches: 59, Mismatches: 19, Indels: 12
0.66 0.21 0.13
Matches are distributed among these distances:
39 4 0.07
40 3 0.05
41 9 0.15
42 27 0.46
43 9 0.15
44 3 0.05
45 4 0.07
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.44
Consensus pattern (42 bp):
GGAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
Found at i:7722301 original size:6 final size:5
Alignment explanation
Indices: 7722243--7722420 Score: 83
Period size: 5 Copynumber: 35.8 Consensus size: 5
7722233 TTATTTAAAG
* *
7722243 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAAA AAAAT AAAGA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAA-AT
*
7722293 AAAGT AAAAT AAAAAT AAAAAT AAAAT AAAGAT AAAAAT AAAA- AGAATAT
1 AAAAT AAAAT -AAAAT -AAAAT AAAAT AAA-AT -AAAAT AAAAT A-AA-AT
* * ** *
7722343 TAAAT AAACCT AATCT AATAAT -AAAT -AAAT -AAAT -AAAT AAAA- CAAAT
1 AAAAT AAA-AT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
* *
7722390 AAAAT -ATAT -AAAT AAAAG AAAAT AAAA- AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
7722421 AACCTGGAAT
Statistics
Matches: 138, Mismatches: 18, Indels: 35
0.72 0.09 0.18
Matches are distributed among these distances:
3 3 0.02
4 29 0.21
5 74 0.54
6 25 0.18
7 7 0.05
ACGTcount: A:0.75, C:0.03, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:7722301 original size:32 final size:30
Alignment explanation
Indices: 7722242--7722324 Score: 96
Period size: 31 Copynumber: 2.7 Consensus size: 30
7722232 TTTATTTAAA
* * *
7722242 GAAAATAAAATAATA-AAACAAAATAAAAGT
1 GAAAATAAAAAAAAATAAAGAAAATAAAA-T
7722272 GAAAATAAAAAAAAATAAAGAAAAGTAAAAT
1 GAAAATAAAAAAAAATAAAGAAAA-TAAAAT
*
7722303 AAAAATAAAAATAAAATAAAGA
1 GAAAATAAAAA-AAAATAAAGA
7722325 TAAAAATAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
30 13 0.28
31 18 0.39
32 15 0.33
ACGTcount: A:0.77, C:0.01, G:0.07, T:0.14
Consensus pattern (30 bp):
GAAAATAAAAAAAAATAAAGAAAATAAAAT
Found at i:7722312 original size:17 final size:16
Alignment explanation
Indices: 7722243--7722421 Score: 100
Period size: 17 Copynumber: 10.6 Consensus size: 16
7722233 TTATTTAAAG
*
7722243 AAAATAAAATAATAAAA
1 AAAATAAAATAA-AATA
7722260 CAAAATAAAAGTGAAAATA
1 -AAAATAAAA-T-AAAATA
*
7722279 AAAA-AAAAT-AAAGA
1 AAAATAAAATAAAATA
*
7722293 AAAGTAAAATAAAAATA
1 AAAATAAAAT-AAAATA
7722310 AAAATAAAATAAAGATA
1 AAAATAAAATAAA-ATA
*
7722327 AAAATAAAA-AGAATA
1 AAAATAAAATAAAATA
* *
7722342 TTAAATAAACCTAATCTAATA
1 -AAAATAAA-ATAA---AATA
7722363 ATAAAT-AAAT-AAATA
1 A-AAATAAAATAAAATA
*
7722378 AATAAAACAAATAAAATA
1 AA-AATA-AAATAAAATA
*
7722396 TATAAATAAAAGAAAATA
1 -A-AAATAAAATAAAATA
7722414 AAAA-AAAA
1 AAAATAAAA
7722422 ACCTGGAATG
Statistics
Matches: 128, Mismatches: 14, Indels: 41
0.70 0.08 0.22
Matches are distributed among these distances:
14 8 0.06
15 19 0.15
16 16 0.12
17 34 0.27
18 29 0.23
19 9 0.07
20 5 0.04
21 8 0.06
ACGTcount: A:0.75, C:0.03, G:0.04, T:0.18
Consensus pattern (16 bp):
AAAATAAAATAAAATA
Found at i:7722369 original size:4 final size:4
Alignment explanation
Indices: 7722362--7722405 Score: 52
Period size: 4 Copynumber: 10.5 Consensus size: 4
7722352 CTAATCTAAT
* *
7722362 AATA AATA AATA AATA AATAA AACA AATAA AATA TATA AATA AA
1 AATA AATA AATA AATA AAT-A AATA AAT-A AATA AATA AATA AA
7722406 AGAAAATAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
4 27 0.79
5 7 0.21
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:7722400 original size:9 final size:9
Alignment explanation
Indices: 7722244--7722419 Score: 59
Period size: 8 Copynumber: 18.9 Consensus size: 9
7722234 TATTTAAAGA
7722244 AAATAAAAT
1 AAATAAAAT
*
7722253 -AATAAAACA
1 AAATAAAA-T
7722262 AAATAAAAGT
1 AAATAAAA-T
*
7722272 GAAAATAAAAAA
1 --AAAT-AAAAT
7722284 AAATAAAGA-
1 AAATAAA-AT
7722293 AAAGTAAAAT
1 AAA-TAAAAT
7722303 AAA-AATAA-
1 AAATAA-AAT
7722311 AAATAAAAT
1 AAATAAAAT
* *
7722320 AAAGATAA-
1 AAATAAAAT
7722328 AAATAAAA-
1 AAATAAAAT
7722336 AGAATATTAAAT
1 A-AATA--AAAT
7722348 AAACCTAATCTAAT
1 AAA--TAA---AAT
7722362 -AAT-AAAT
1 AAATAAAAT
7722369 AAAT-AAAT
1 AAATAAAAT
*
7722377 AAATAAAAC
1 AAATAAAAT
7722386 AAATAAAAT
1 AAATAAAAT
*
7722395 ATAT-AAAT
1 AAATAAAAT
*
7722403 AAAAGAAAAT
1 -AAATAAAAT
7722413 AAA-AAAA
1 AAATAAAA
7722420 AAACCTGGAA
Statistics
Matches: 130, Mismatches: 13, Indels: 49
0.68 0.07 0.26
Matches are distributed among these distances:
7 3 0.02
8 40 0.31
9 40 0.31
10 24 0.18
11 7 0.05
12 5 0.04
13 8 0.06
14 3 0.02
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:7722400 original size:22 final size:23
Alignment explanation
Indices: 7722239--7722416 Score: 93
Period size: 23 Copynumber: 7.6 Consensus size: 23
7722229 GATTTTATTT
*
7722239 AAAGAAAATAAAAT-AATAAAACA
1 AAAGAAAATAAAATAAAT-AAATA
* * *
7722262 AAATAAAAGTGAAAATAAAAAAAAA
1 AAAGAAAA-T-AAAATAAATAAATA
7722287 TAAAGAAAAGTAAAAT-AA-AAATAA
1 -AAAGAAAA-TAAAATAAATAAAT-A
*
7722311 AAATAAAATAAAGAT-AA-AAATAA
1 AAAGAAAATAAA-ATAAATAAAT-A
* * *
7722334 AAAGAATATTAAATAAACCTAATCTA
1 AAAGAAAATAAAATAAA--TAA-ATA
*
7722360 ATAA-TAAAT-AAATAAATAAATA
1 A-AAGAAAATAAAATAAATAAATA
* *
7722382 AAA-CAAATAAAATATATAAATA
1 AAAGAAAATAAAATAAATAAATA
7722404 AAAGAAAATAAAA
1 AAAGAAAATAAAA
7722417 AAAAAACCTG
Statistics
Matches: 125, Mismatches: 16, Indels: 28
0.74 0.09 0.17
Matches are distributed among these distances:
21 6 0.05
22 24 0.19
23 49 0.39
24 4 0.03
25 21 0.17
26 18 0.14
27 3 0.02
ACGTcount: A:0.74, C:0.03, G:0.04, T:0.19
Consensus pattern (23 bp):
AAAGAAAATAAAATAAATAAATA
Found at i:7722691 original size:16 final size:16
Alignment explanation
Indices: 7722665--7722708 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
7722655 GCAGATCGAG
*
7722665 CCTCCTCCCTCTCTCT
1 CCTCCTTCCTCTCTCT
*
7722681 CTTCCTTCCTCT-TCT
1 CCTCCTTCCTCTCTCT
7722696 CCTCCTT-CTCTCT
1 CCTCCTTCCTCTCT
7722709 AACATTTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 4 0.17
15 10 0.42
16 10 0.42
ACGTcount: A:0.00, C:0.55, G:0.00, T:0.45
Consensus pattern (16 bp):
CCTCCTTCCTCTCTCT
Found at i:7723295 original size:12 final size:12
Alignment explanation
Indices: 7723278--7723317 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
7723268 ATAAATAAAA
7723278 AAATTAACAGAT
1 AAATTAACAGAT
7723290 AAATTAA-A-ATT
1 AAATTAACAGA-T
7723301 AAA-TAACAGAT
1 AAATTAACAGAT
7723312 AAATTA
1 AAATTA
7723318 TAACATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (12 bp):
AAATTAACAGAT
Found at i:7723310 original size:22 final size:21
Alignment explanation
Indices: 7723256--7723317 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 21
7723246 AATATTAATG
*
7723256 AAAATAAATCAGATAAA-TAAA
1 AAAATTAA-CAGATAAATTAAA
7723277 AAAATTAACAGATAAATTAAA
1 AAAATTAACAGATAAATTAAA
7723298 ATTAAA-TAACAGATAAATTA
1 A--AAATTAACAGATAAATTA
7723318 TAACATATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
20 8 0.22
21 12 0.32
22 14 0.38
23 3 0.08
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (21 bp):
AAAATTAACAGATAAATTAAA
Found at i:7723444 original size:6 final size:6
Alignment explanation
Indices: 7723411--7723513 Score: 77
Period size: 6 Copynumber: 16.5 Consensus size: 6
7723401 AGTAATAAAT
* * * *
7723411 AAATAA ATAATAA ATACAT-A AGATAA AAAT-A AAAGAA AAATAT ATATAAA
1 AAATAA A-AATAA A-A-ATAA AAATAA AAATAA AAATAA AAATAA AAAT-AA
*
7723461 AAATAA AAATAA AAATAA AAAT-A AAATAA AAATGTAA AATACAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA--TAA AA-ATAA AAATAA
7723511 AAA
1 AAA
7723514 AAGAAAATAG
Statistics
Matches: 78, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
5 11 0.14
6 41 0.53
7 18 0.23
8 7 0.09
9 1 0.01
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19
Consensus pattern (6 bp):
AAATAA
Found at i:7723446 original size:13 final size:12
Alignment explanation
Indices: 7723411--7723513 Score: 77
Period size: 13 Copynumber: 8.2 Consensus size: 12
7723401 AGTAATAAAT
7723411 AAATAAATAATAA
1 AAATAAA-AATAA
*
7723424 ATACAT-AAGATAA
1 A-A-ATAAAAATAA
*
7723437 AAAT-AAAAGAA
1 AAATAAAAATAA
* *
7723448 AAATATATATAAA
1 AAATAAAAAT-AA
7723461 AAATAAAAATAA
1 AAATAAAAATAA
7723473 AAATAAAAAT-A
1 AAATAAAAATAA
7723484 AAATAAAAATGTAA
1 AAATAAAAA--TAA
*
7723498 AATACAAAAATAA
1 AA-ATAAAAATAA
7723511 AAA
1 AAA
7723514 AAGAAAATAG
Statistics
Matches: 73, Mismatches: 9, Indels: 17
0.74 0.09 0.17
Matches are distributed among these distances:
11 21 0.29
12 16 0.22
13 22 0.30
14 6 0.08
15 8 0.11
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19
Consensus pattern (12 bp):
AAATAAAAATAA
Found at i:7723467 original size:30 final size:30
Alignment explanation
Indices: 7723433--7723492 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
7723423 AATACATAAG
*
7723433 ATAAAAAT-AAAAGAAAAATATATATAAAAA
1 ATAAAAATAAAAAGAAAAATA-AAATAAAAA
*
7723463 ATAAAAATAAAAATAAAAATAAAATAAAAA
1 ATAAAAATAAAAAGAAAAATAAAATAAAAA
7723493 TGTAAAATAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 16 0.59
31 11 0.41
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (30 bp):
ATAAAAATAAAAAGAAAAATAAAATAAAAA
Found at i:7723500 original size:30 final size:31
Alignment explanation
Indices: 7723411--7723513 Score: 95
Period size: 31 Copynumber: 3.3 Consensus size: 31
7723401 AGTAATAAAT
* *
7723411 AAATAAATA-ATAAATACATAAGATAAAAAT-A
1 AAATAAAAATATAAATA-A-AAAATAAAAATAA
* *
7723442 AAAGAAAAATATATATAAAAAATAAAAATAA
1 AAATAAAAATATAAATAAAAAATAAAAATAA
* *
7723473 AAATAAAAATA-AAATAAAAATGTAAAATACAA
1 AAATAAAAATATAAATAAAAA-ATAAAA-ATAA
7723505 AAATAAAAA
1 AAATAAAAA
7723514 AAGAAAATAG
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
30 18 0.30
31 24 0.40
32 18 0.30
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.19
Consensus pattern (31 bp):
AAATAAAAATATAAATAAAAAATAAAAATAA
Found at i:7723520 original size:13 final size:12
Alignment explanation
Indices: 7723456--7723522 Score: 62
Period size: 13 Copynumber: 5.2 Consensus size: 12
7723446 AAAAATATAT
7723456 ATAAAAAATAAAA
1 ATAAAAAA-AAAA
*
7723469 ATAAAAATAAAA
1 ATAAAAAAAAAA
*
7723481 ATAAAATAAAAAT
1 ATAAAA-AAAAAA
* *
7723494 GTAAAATACAAAA
1 ATAAAA-AAAAAA
7723507 ATAAAAAAAGAAA
1 ATAAAAAAA-AAA
7723520 ATA
1 ATA
7723523 GACTTACCTA
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
12 12 0.27
13 32 0.73
ACGTcount: A:0.79, C:0.01, G:0.03, T:0.16
Consensus pattern (12 bp):
ATAAAAAAAAAA
Found at i:7724600 original size:39 final size:39
Alignment explanation
Indices: 7724540--7724615 Score: 125
Period size: 39 Copynumber: 1.9 Consensus size: 39
7724530 ATCACGAGAT
*
7724540 GGGCCATATATGTTTAAAAAGCTTATAGAGTCTAGTTCA
1 GGGCCATATATGCTTAAAAAGCTTATAGAGTCTAGTTCA
* *
7724579 GGGCCATATATGCTTAGAAAGCTTATTGAGTCTAGTT
1 GGGCCATATATGCTTAAAAAGCTTATAGAGTCTAGTT
7724616 TCTAATGCAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.34
Consensus pattern (39 bp):
GGGCCATATATGCTTAAAAAGCTTATAGAGTCTAGTTCA
Found at i:7738410 original size:44 final size:44
Alignment explanation
Indices: 7738362--7738449 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
7738352 AACCAAAAAA
* * *
7738362 AAATATATTTCTAAATTGATCCAAATGGTGAAAAATTTAGAAAT
1 AAATAAATTTCTAAATAGACCCAAATGGTGAAAAATTTAGAAAT
* * * *
7738406 AAATAAATTTCTAAATAGGCCCAAATTGTGGAGAATTTAGAAAT
1 AAATAAATTTCTAAATAGACCCAAATGGTGAAAAATTTAGAAAT
7738450 TCAAAATGAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.47, C:0.08, G:0.14, T:0.32
Consensus pattern (44 bp):
AAATAAATTTCTAAATAGACCCAAATGGTGAAAAATTTAGAAAT
Found at i:7742509 original size:10 final size:10
Alignment explanation
Indices: 7742496--7742575 Score: 63
Period size: 10 Copynumber: 7.7 Consensus size: 10
7742486 ATGAAAAAAT
7742496 AAAAAAAGGA
1 AAAAAAAGGA
7742506 AAAAAAAGGA
1 AAAAAAAGGA
*
7742516 AAAGAAAGGA
1 AAAAAAAGGA
* *
7742526 AAAGAAAGAA
1 AAAAAAAGGA
**
7742536 AAATAAAAAAA
1 AAA-AAAAGGA
7742547 TAAAAAAAGAGA
1 -AAAAAAAG-GA
*
7742559 AGAAAAA-GA
1 AAAAAAAGGA
7742568 AGAAAAAA
1 A-AAAAAA
7742576 ATGAATGGAA
Statistics
Matches: 58, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
9 3 0.05
10 36 0.62
11 15 0.26
12 4 0.07
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (10 bp):
AAAAAAAGGA
Found at i:7742523 original size:20 final size:18
Alignment explanation
Indices: 7742489--7742576 Score: 67
Period size: 19 Copynumber: 4.8 Consensus size: 18
7742479 CTAATAGATG
*
7742489 AAAAAATAAAAAAAGGAA
1 AAAAAAGAAAAAAAGGAA
7742507 AAAAAAGGAAAAGAAAGGAA
1 AAAAAA-GAAAA-AAAGGAA
*
7742527 AAGAAAGAAAAATAA--AA
1 AAAAAAGAAAAA-AAGGAA
7742544 AAATAAA-AAAAGAGAA-GAA
1 AAA-AAAGAAAA-A-AAGGAA
*
7742563 AAAGAAGAAAAAAA
1 AAAAAAGAAAAAAA
7742577 TGAATGGAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
17 10 0.17
18 16 0.28
19 20 0.34
20 12 0.21
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (18 bp):
AAAAAAGAAAAAAAGGAA
Found at i:7742538 original size:36 final size:36
Alignment explanation
Indices: 7742490--7742574 Score: 86
Period size: 36 Copynumber: 2.4 Consensus size: 36
7742480 TAATAGATGA
* **
7742490 AAAAATAA-AAAAAGGAAAAAAA-AGGAAAAGA-AAG
1 AAAAAGAAGAAAAA-GAAAAAAATAAAAAAAGAGAAG
* *
7742524 GAAAAGAAAGAAAAATAAAAAAATAAAAAAAGAGAAG
1 AAAAAG-AAGAAAAAGAAAAAAATAAAAAAAGAGAAG
7742561 AAAAAGAAGAAAAA
1 AAAAAGAAGAAAAA
7742575 AATGAATGGA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
34 4 0.10
35 9 0.22
36 20 0.49
37 8 0.20
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (36 bp):
AAAAAGAAGAAAAAGAAAAAAATAAAAAAAGAGAAG
Found at i:7743408 original size:63 final size:63
Alignment explanation
Indices: 7743303--7743469 Score: 171
Period size: 63 Copynumber: 2.7 Consensus size: 63
7743293 GATCAGTAAG
* * * * *
7743303 CAAAATTTATTCTGAAAT-AGTTAGTGTTAAGAAACCTATGAGTGGTGACAAAATGAT-GAAGGG
1 CAAAATTTGTTCTGAAATGA-CTAATGTTAAGAAGCCTGTGAGTGGTGACAAAATGATAG-A-GG
7743366 A
63 A
* *
7743367 -AAAATTTGTTCTGAAATGACTAATGCTAAGAAGCCTGTGAGTGGTGACCAAATGATAGAGGA
1 CAAAATTTGTTCTGAAATGACTAATGTTAAGAAGCCTGTGAGTGGTGACAAAATGATAGAGGA
* * * *
7743429 CAAAATGTGTTCTGAGATTG-CTAATGTTGAGAAGCTTGTGA
1 CAAAATTTGTTCTGA-AATGACTAATGTTAAGAAGCCTGTGA
7743470 ATGATGATCA
Statistics
Matches: 87, Mismatches: 12, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
62 3 0.03
63 79 0.91
64 5 0.06
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.29
Consensus pattern (63 bp):
CAAAATTTGTTCTGAAATGACTAATGTTAAGAAGCCTGTGAGTGGTGACAAAATGATAGAGGA
Found at i:7743943 original size:45 final size:46
Alignment explanation
Indices: 7743870--7744073 Score: 313
Period size: 45 Copynumber: 4.5 Consensus size: 46
7743860 GAAGTCCTGA
* *
7743870 ATTTTCGAATGAGAATCTTTGAGTCTTAAATAAGAATCTTTAAGAT
1 ATTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGAT
* *
7743916 GTTTTCAAATGAGAA-CTTTGAGTCTTAAATGAGAATTTTTAAGAT
1 ATTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGAT
* *
7743961 ATTTTCAAATGGGAAACTTTGAGTCTTAAATGAGAATCTTTAAGA-
1 ATTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGAT
* * *
7744006 ATTTTCAAATGAGAACCTTTAAGTCTTAAATGAGAATCTTTAAGAC
1 ATTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGAT
7744052 ATTTTCAAATGAGAATCTTTGA
1 ATTTTCAAATGAGAATCTTTGA
7744074 ATTTCAAAGA
Statistics
Matches: 144, Mismatches: 12, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
45 83 0.58
46 61 0.42
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (46 bp):
ATTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGAT
Found at i:7744031 original size:91 final size:91
Alignment explanation
Indices: 7743870--7744073 Score: 320
Period size: 91 Copynumber: 2.2 Consensus size: 91
7743860 GAAGTCCTGA
* *
7743870 ATTTTCGAATGAGAATCTTTGAGTCTTAAATAAGAATCTTTAAGATGTTTTCAAATGAGAACTTT
1 ATTTTCAAATGAGAATCTTTGAGTCTTAAATAAGAATCTTTAAGATATTTTCAAATGAGAACTTT
* * *
7743935 GAGTCTTAAATGAGAATTTTTAAGAT
66 AAGTCTTAAATGAGAATCTTTAAGAC
* * *
7743961 ATTTTCAAATGGGAAACTTTGAGTCTTAAATGAGAATCTTTAAGA-ATTTTCAAATGAGAACCTT
1 ATTTTCAAATGAGAATCTTTGAGTCTTAAATAAGAATCTTTAAGATATTTTCAAATGAGAA-CTT
7744025 TAAGTCTTAAATGAGAATCTTTAAGAC
65 TAAGTCTTAAATGAGAATCTTTAAGAC
7744052 ATTTTCAAATGAGAATCTTTGA
1 ATTTTCAAATGAGAATCTTTGA
7744074 ATTTCAAAGA
Statistics
Matches: 102, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
90 14 0.14
91 88 0.86
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (91 bp):
ATTTTCAAATGAGAATCTTTGAGTCTTAAATAAGAATCTTTAAGATATTTTCAAATGAGAACTTT
AAGTCTTAAATGAGAATCTTTAAGAC
Found at i:7744101 original size:28 final size:28
Alignment explanation
Indices: 7744069--7744123 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
7744059 AATGAGAATC
7744069 TTTGAATTTCAAAGAAAAATATTTGAGT
1 TTTGAATTTCAAAGAAAAATATTTGAGT
* * * *
7744097 TTTGAGTTTCAAATAAGAATCTTTGAG
1 TTTGAATTTCAAAGAAAAATATTTGAG
7744124 ATGTGAAACT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.40
Consensus pattern (28 bp):
TTTGAATTTCAAAGAAAAATATTTGAGT
Found at i:7744172 original size:20 final size:20
Alignment explanation
Indices: 7744147--7744184 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7744137 AGATTTATTG
*
7744147 AATGAGAACCTTTGAACTCA
1 AATGAGAACATTTGAACTCA
*
7744167 AATGAGAAGATTTGAACT
1 AATGAGAACATTTGAACT
7744185 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.13, G:0.18, T:0.26
Consensus pattern (20 bp):
AATGAGAACATTTGAACTCA
Done.