Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 41 of 100
Found at i:7744600 original size:41 final size:41
Alignment explanation
Indices: 7744516--7744948 Score: 473
Period size: 41 Copynumber: 10.6 Consensus size: 41
7744506 TTTCAAAGTG
*
7744516 CTGTTTAAAGGAGCAATTTATTTTTCAAAAGTTATGGTGCCT
1 CTGTTTAAAGGAGCAATTTATTTTTC-AAAGTTGTGGTGCCT
* *
7744558 CTGTTTAAAGGAGCATTTTATTTTTCAAAGTTGTGGTACCT
1 CTGTTTAAAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
* * * * *
7744599 CTATTTAAAGGA-CCATTTACTTTTCAAAATTGTGGTGCTT
1 CTGTTTAAAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
* * * *
7744639 TTGTTTAGAGGATCAATTTATTTTTTAAAGTTGTGGTGCCT
1 CTGTTTAAAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
* *
7744680 CTGTTTGGAA-GAGCAATTTATTTTTCAAAGTTGTAGTGCCT
1 CTGTTT-AAAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
* *
7744721 CTATTTAAAGGAGC-ATTTATTTTTCAAAGTTTTGGTGCCT
1 CTGTTTAAAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
* * * * **
7744761 CTATTTAGAGGAGCAATTTACTTTTCAAAGTTATCAT-CCT
1 CTGTTTAAAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
* * * * *
7744801 CTATTTAGATGAGCATTTTACTTTTCAAAGTTGTGGTGCCT
1 CTGTTTAAAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
* * * * *
7744842 CTGTTTAGAGGAGCATTTTACTTTTCAAAGTTATAGTGCCT
1 CTGTTTAAAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
* *
7744883 CTATTTATAA-GAGCAATTTATTTTTCAAAGTTGTAGTGCCT
1 CTGTTTA-AAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
* *
7744924 TTGTTTAGAGGAGC-ATTTATTTTTC
1 CTGTTTAAAGGAGCAATTTATTTTTC
7744949 TCAAAGTCAT
Statistics
Matches: 334, Mismatches: 50, Indels: 16
0.83 0.12 0.04
Matches are distributed among these distances:
40 117 0.35
41 190 0.57
42 27 0.08
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (41 bp):
CTGTTTAAAGGAGCAATTTATTTTTCAAAGTTGTGGTGCCT
Found at i:7744659 original size:81 final size:82
Alignment explanation
Indices: 7744516--7744948 Score: 493
Period size: 81 Copynumber: 5.3 Consensus size: 82
7744506 TTTCAAAGTG
* * * *
7744516 CTGTTTAAAGGAGCAATTTATTTTTCAAAAGTTATGGTGCCTCTGTTTAAAGGAGCATTTTATTT
1 CTGTTTAAAGGAGCAATTTACTTTTC-AAAGTTATAGTGCCTCTATTTAAAGGAGCAATTTATTT
*
7744581 TTCAAAGTTGTGGTACCT
65 TTCAAAGTTGTGGTGCCT
* * * * * * * * * *
7744599 CTATTTAAAGGA-CCATTTACTTTTCAAAATTGTGGTGCTTTTGTTTAGAGGATCAATTTATTTT
1 CTGTTTAAAGGAGCAATTTACTTTTCAAAGTTATAGTGCCTCTATTTAAAGGAGCAATTTATTTT
*
7744663 TTAAAGTTGTGGTGCCT
66 TCAAAGTTGTGGTGCCT
* * *
7744680 CTGTTTGGAA-GAGCAATTTATTTTTCAAAGTTGTAGTGCCTCTATTTAAAGGAGC-ATTTATTT
1 CTGTTT-AAAGGAGCAATTTACTTTTCAAAGTTATAGTGCCTCTATTTAAAGGAGCAATTTATTT
*
7744743 TTCAAAGTTTTGGTGCCT
65 TTCAAAGTTGTGGTGCCT
* * * * * *
7744761 CTATTTAGAGGAGCAATTTACTTTTCAAAGTTATCA-T-CCTCTATTTAGATGAGCATTTTACTT
1 CTGTTTAAAGGAGCAATTTACTTTTCAAAGTTAT-AGTGCCTCTATTTAAAGGAGCAATTTATTT
7744824 TTCAAAGTTGTGGTGCCT
65 TTCAAAGTTGTGGTGCCT
* *
7744842 CTGTTTAGAGGAGCATTTTACTTTTCAAAGTTATAGTGCCTCTATTTATAA-GAGCAATTTATTT
1 CTGTTTAAAGGAGCAATTTACTTTTCAAAGTTATAGTGCCTCTATTTA-AAGGAGCAATTTATTT
*
7744906 TTCAAAGTTGTAGTGCCT
65 TTCAAAGTTGTGGTGCCT
* * *
7744924 TTGTTTAGAGGAGC-ATTTATTTTTC
1 CTGTTTAAAGGAGCAATTTACTTTTC
7744949 TCAAAGTCAT
Statistics
Matches: 298, Mismatches: 44, Indels: 18
0.83 0.12 0.05
Matches are distributed among these distances:
80 17 0.06
81 171 0.57
82 98 0.33
83 12 0.04
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (82 bp):
CTGTTTAAAGGAGCAATTTACTTTTCAAAGTTATAGTGCCTCTATTTAAAGGAGCAATTTATTTT
TCAAAGTTGTGGTGCCT
Found at i:7744694 original size:122 final size:122
Alignment explanation
Indices: 7744519--7744948 Score: 533
Period size: 122 Copynumber: 3.5 Consensus size: 122
7744509 CAAAGTGCTG
*
7744519 TTTAAAGGAGCAATTTATTTTTCAAAAGTTATGGTGCCTCTGTTTA-AAGGAGCATTTTATTTTT
1 TTTAGAGGAGCAATTTATTTTTC-AAAGTTATGGTGCCTCTGTTTAGAA-GAGCATTTTATTTTT
* * * * * * *
7744583 CAAAGTTGTGGTACCTCTATTTAAAGGACCATTTACTTTTCAAAATTGTGGTGCTTTTG
64 CAAAGTTGTGGTGCCTCTATTTAAAGGAGCATTTACTTTTCAAAGTTATGGTGCCTCTA
* * * * *
7744642 TTTAGAGGATCAATTTATTTTTTAAAGTTGTGGTGCCTCTGTTTGGAAGAGCAATTTATTTTTCA
1 TTTAGAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTGTTTAGAAGAGCATTTTATTTTTCA
* * *
7744707 AAGTTGTAGTGCCTCTATTTAAAGGAGCATTTATTTTTCAAAGTTTTGGTGCCTCTA
66 AAGTTGTGGTGCCTCTATTTAAAGGAGCATTTACTTTTCAAAGTTATGGTGCCTCTA
* ** * * *
7744764 TTTAGAGGAGCAATTTACTTTTCAAAGTTATCAT-CCTCTATTTAGATGAGCATTTTACTTTTCA
1 TTTAGAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTGTTTAGAAGAGCATTTTATTTTTCA
* * *
7744828 AAGTTGTGGTGCCTCTGTTTAGAGGAGCATTTTACTTTTCAAAGTTATAGTGCCTCTA
66 AAGTTGTGGTGCCTCTATTTAAAGGAGCA-TTTACTTTTCAAAGTTATGGTGCCTCTA
* * * * * *
7744886 TTTATAAGAGCAATTTATTTTTCAAAGTTGTAGTGCCTTTGTTTAGAGGAGCA-TTTATTTTTC
1 TTTAGAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTGTTTAGAAGAGCATTTTATTTTTC
7744949 TCAAAGTCAT
Statistics
Matches: 262, Mismatches: 42, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
121 51 0.19
122 174 0.66
123 37 0.14
ACGTcount: A:0.26, C:0.13, G:0.18, T:0.44
Consensus pattern (122 bp):
TTTAGAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTGTTTAGAAGAGCATTTTATTTTTCA
AAGTTGTGGTGCCTCTATTTAAAGGAGCATTTACTTTTCAAAGTTATGGTGCCTCTA
Found at i:7745016 original size:13 final size:13
Alignment explanation
Indices: 7744998--7745022 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7744988 TTTTTTTCAA
7744998 AAAAATAAAAAAT
1 AAAAATAAAAAAT
7745011 AAAAATAAAAAA
1 AAAAATAAAAAA
7745023 ACTGTGTCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:7749421 original size:25 final size:25
Alignment explanation
Indices: 7749392--7749440 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
7749382 GCCTTAAATT
7749392 TTGTTTTCATTGTAGATAAAAAAAA
1 TTGTTTTCATTGTAGATAAAAAAAA
* *
7749417 TTGTTTTCATTGTATATAAGAAAA
1 TTGTTTTCATTGTAGATAAAAAAA
7749441 TAAGAATTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.43
Consensus pattern (25 bp):
TTGTTTTCATTGTAGATAAAAAAAA
Found at i:7750778 original size:2 final size:2
Alignment explanation
Indices: 7750773--7750834 Score: 115
Period size: 2 Copynumber: 31.0 Consensus size: 2
7750763 ATATATATAT
7750773 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
*
7750815 AG AG AG AG AG AA AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG
7750835 TATTTGCATA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7753634 original size:16 final size:15
Alignment explanation
Indices: 7753613--7753647 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7753603 TTTGCATGAT
7753613 TTTTTTTATGAATTTA
1 TTTTTTTA-GAATTTA
*
7753629 TTTTTTTAGTATTTA
1 TTTTTTTAGAATTTA
7753644 TTTT
1 TTTT
7753648 AACATGAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.20, C:0.00, G:0.06, T:0.74
Consensus pattern (15 bp):
TTTTTTTAGAATTTA
Found at i:7753781 original size:20 final size:20
Alignment explanation
Indices: 7753753--7753843 Score: 68
Period size: 20 Copynumber: 4.7 Consensus size: 20
7753743 ATTATATTTA
7753753 ATTGCATGATAATTAATATT
1 ATTGCATGATAATTAATATT
* ** *
7753773 ATTGTATGATGTTTATTATT
1 ATTGCATGATAATTAATATT
*
7753793 AGTGCATGATACATT-ATATT
1 ATTGCATGATA-ATTAATATT
7753813 ATT--ATTG-T-ATT-ATATT
1 ATTGCA-TGATAATTAATATT
7753829 ATTTGCATGATAATT
1 A-TTGCATGATAATT
7753844 TTTGTTTATT
Statistics
Matches: 54, Mismatches: 10, Indels: 14
0.69 0.13 0.18
Matches are distributed among these distances:
16 9 0.17
17 2 0.04
18 4 0.07
19 4 0.07
20 33 0.61
21 2 0.04
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.51
Consensus pattern (20 bp):
ATTGCATGATAATTAATATT
Found at i:7753881 original size:15 final size:15
Alignment explanation
Indices: 7753860--7753900 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
7753850 TATTTTAATT
*
7753860 TATTTTTTTAAATTAA
1 TATTTTTTTAAA-AAA
7753876 -ATTTTTTTAAAAAA
1 TATTTTTTTAAAAAA
7753890 TATTTTTTTAA
1 TATTTTTTTAA
7753901 TCCTATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 2 0.09
15 21 0.91
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTTTTTAAAAAA
Found at i:7759249 original size:15 final size:16
Alignment explanation
Indices: 7759221--7759263 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
7759211 GAGATTTTTT
*
7759221 AAATATTTATATTAAA
1 AAATATTTAAATTAAA
7759237 AAAT-TTTAAATTAAA
1 AAATATTTAAATTAAA
*
7759252 TAATATTATAAA
1 AAATATT-TAAA
7759264 GAATAATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 13 0.57
16 6 0.26
17 4 0.17
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATATTTAAATTAAA
Found at i:7759273 original size:18 final size:18
Alignment explanation
Indices: 7759250--7759292 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
7759240 TTTTAAATTA
7759250 AATAATA-TTATAAAGAAT
1 AATAATATTTATAAA-AAT
*
7759268 AATAATATTTATTAAAAT
1 AATAATATTTATAAAAAT
7759286 AATAATA
1 AATAATA
7759293 GTAATAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 17 0.74
19 6 0.26
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (18 bp):
AATAATATTTATAAAAAT
Found at i:7761098 original size:29 final size:29
Alignment explanation
Indices: 7761060--7761119 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
7761050 CTTTTGACAA
7761060 TTACTGACCTGACTACTCAAGATAAAATT
1 TTACTGACCTGACTACTCAAGATAAAATT
7761089 TTACTGACCTGACTACTCAAGATAAAATT
1 TTACTGACCTGACTACTCAAGATAAAATT
7761118 TT
1 TT
7761120 GGAGAAATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (29 bp):
TTACTGACCTGACTACTCAAGATAAAATT
Found at i:7761618 original size:13 final size:13
Alignment explanation
Indices: 7761600--7761624 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7761590 ATACAAATGT
7761600 GATCTCTGCAAAA
1 GATCTCTGCAAAA
7761613 GATCTCTGCAAA
1 GATCTCTGCAAA
7761625 CGTAGTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (13 bp):
GATCTCTGCAAAA
Found at i:7766877 original size:3 final size:3
Alignment explanation
Indices: 7766864--7766920 Score: 96
Period size: 3 Copynumber: 18.7 Consensus size: 3
7766854 ATTTTTAATT
*
7766864 TTA TTA TTTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TTA TTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7766910 TTA TTA TTA TT
1 TTA TTA TTA TT
7766921 TATTTATCTA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
3 48 0.94
4 3 0.06
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7767196 original size:22 final size:22
Alignment explanation
Indices: 7767154--7767197 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
7767144 TAAATAGATT
*
7767154 CACAGAAAACGAACAAGACACA
1 CACAGAAAACGAACAAAACACA
*
7767176 CACAGACAGACGAA-AAAACACA
1 CACAGA-AAACGAACAAAACACA
7767198 AGAGAAAGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.59, C:0.27, G:0.14, T:0.00
Consensus pattern (22 bp):
CACAGAAAACGAACAAAACACA
Found at i:7767669 original size:21 final size:19
Alignment explanation
Indices: 7767643--7767685 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
7767633 TTTTTCGGCC
7767643 AATTTTGAAGTTTTCAATGTA
1 AATTTT-AAGTTTTCAAT-TA
* *
7767664 AATTTTCAGTTTTCGATTA
1 AATTTTAAGTTTTCAATTA
7767683 AAT
1 AAT
7767686 ATTCAACCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 9 0.45
21 6 0.30
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.49
Consensus pattern (19 bp):
AATTTTAAGTTTTCAATTA
Found at i:7767690 original size:19 final size:20
Alignment explanation
Indices: 7767651--7767690 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
7767641 CCAATTTTGA
*
7767651 AGTTTTCAATGTAAATTTTC
1 AGTTTTCAATGTAAATATTC
*
7767671 AGTTTTCGAT-TAAATATTC
1 AGTTTTCAATGTAAATATTC
7767690 A
1 A
7767691 ACCGAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.47
Consensus pattern (20 bp):
AGTTTTCAATGTAAATATTC
Found at i:7768099 original size:6 final size:6
Alignment explanation
Indices: 7768079--7768121 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
7768069 AATTATTTAG
*
7768079 TATTCTT TA-TTT TATTTT TATTTT TATTTT TATCTT TATTTT T
1 TATT-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT T
7768122 TTTCTTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
5 4 0.12
6 27 0.82
7 2 0.06
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:7768208 original size:58 final size:57
Alignment explanation
Indices: 7768145--7768354 Score: 250
Period size: 58 Copynumber: 3.7 Consensus size: 57
7768135 AATTCCAAAA
** *
7768145 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCT
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCC
* *
7768202 ATAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAATAAAATTTCC
1 A-AAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATAAAATTTCC
* * *
7768261 AAAAACA-TTTT-AGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTC
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCC
** * * *
7768316 --AAAT-GCTTTAAGAAAAAGTTGAAAGTACCAATTTTCCTT
1 AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
7768355 ATATAAAAGT
Statistics
Matches: 134, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
53 6 0.04
54 26 0.19
55 13 0.10
56 27 0.20
57 5 0.04
58 45 0.34
59 12 0.09
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.36
Consensus pattern (57 bp):
AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCC
Found at i:7768362 original size:114 final size:112
Alignment explanation
Indices: 7768153--7768355 Score: 295
Period size: 114 Copynumber: 1.8 Consensus size: 112
7768143 AAAAAAATAT
* ** *
7768153 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTCTATAAAATATTTTTGAG
1 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTC---AAAATAGCTTTAAG
*
7768218 AAAAAGTTGAAAGTATCAATTTTCCTTAAAAAATAAAATTTCCAAAAACA
63 AAAAAGTTGAAAGTACCAATTTTCCTTAAAAAATAAAATTTCCAAAAACA
*
7768268 TTTT-AGGGAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTC-AAAT-GCTTTAAGAA
1 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAATTTTCAAAATAGCTTTAAGAA
7768330 AAAGTTGAAAGTACCAATTTTCCTTA
65 AAAGTTGAAAGTACCAATTTTCCTTA
7768356 TATAAAAGTA
Statistics
Matches: 81, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
110 32 0.40
111 4 0.05
114 34 0.42
115 11 0.14
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (112 bp):
TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAATTTTCAAAATAGCTTTAAGAAA
AAGTTGAAAGTACCAATTTTCCTTAAAAAATAAAATTTCCAAAAACA
Found at i:7772386 original size:17 final size:17
Alignment explanation
Indices: 7772364--7772436 Score: 69
Period size: 17 Copynumber: 4.2 Consensus size: 17
7772354 ATGAATGAAG
7772364 GAAAAAAGAAAAAAATA
1 GAAAAAAGAAAAAAATA
7772381 GAAAAAAATAGAAAAAAAT-
1 G--AAAAA-AGAAAAAAATA
* *
7772400 GAAAAATGAAAAAAAAA
1 GAAAAAAGAAAAAAATA
*
7772417 TAAAAAAGAGAAAAAA-A
1 GAAAAAAGA-AAAAAATA
7772434 GAA
1 GAA
7772437 TACTCAAATT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
16 8 0.17
17 16 0.35
18 6 0.13
19 6 0.13
20 10 0.22
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (17 bp):
GAAAAAAGAAAAAAATA
Found at i:7772388 original size:11 final size:10
Alignment explanation
Indices: 7772365--7772433 Score: 71
Period size: 10 Copynumber: 7.5 Consensus size: 10
7772355 TGAATGAAGG
7772365 AAAAA-AGAA
1 AAAAATAGAA
7772374 AAAAATAGAA
1 AAAAATAGAA
7772384 AAAAATAGAA
1 AAAAATAGAA
7772394 AAAAAT-G--
1 AAAAATAGAA
7772401 AAAAAT-GAA
1 AAAAATAGAA
7772410 AAAAA-A-ATA
1 AAAAATAGA-A
*
7772419 AAAAAGAGAA
1 AAAAATAGAA
7772429 AAAAA
1 AAAAA
7772434 GAATACTCAA
Statistics
Matches: 53, Mismatches: 0, Indels: 13
0.80 0.00 0.20
Matches are distributed among these distances:
7 7 0.13
8 1 0.02
9 17 0.32
10 27 0.51
11 1 0.02
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (10 bp):
AAAAATAGAA
Found at i:7772388 original size:18 final size:18
Alignment explanation
Indices: 7772365--7772433 Score: 72
Period size: 18 Copynumber: 3.8 Consensus size: 18
7772355 TGAATGAAGG
7772365 AAAAAAGAAAAAAATAGAA
1 AAAAAAGAAAAAAATAG-A
7772384 AAAAATAGAAAAAAAT-GA
1 AAAAA-AGAAAAAAATAGA
7772402 AAAATGAA-AAAAAAATA-A
1 AAAA--AAGAAAAAAATAGA
*
7772420 AAAAGAGAAAAAAA
1 AAAAAAGAAAAAAA
7772434 GAATACTCAA
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
16 1 0.02
17 7 0.16
18 18 0.41
19 7 0.16
20 11 0.25
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (18 bp):
AAAAAAGAAAAAAATAGA
Found at i:7773632 original size:20 final size:20
Alignment explanation
Indices: 7773594--7773632 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7773584 AAAGTTCGTT
* *
7773594 GAATGTGAATCTTCGAACTA
1 GAATGAGAATCTTCAAACTA
*
7773614 GAATGAGAATCTTTAAACT
1 GAATGAGAATCTTCAAACT
7773633 TTTGGATGGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (20 bp):
GAATGAGAATCTTCAAACTA
Found at i:7774239 original size:42 final size:42
Alignment explanation
Indices: 7774171--7774293 Score: 133
Period size: 42 Copynumber: 2.9 Consensus size: 42
7774161 AGAGTAATTA
* * *
7774171 TTATTTTTC-AAAGTTGA-GGTTACCTCTATTTAGATGAGCAAT
1 TTATTTTTCAAAAGTT-ATGG-TGCCTCTACTTAGAGGAGCAAT
*
7774213 TTATTTTTCAAAAGTTATGGTGCCTCTGCTTAGAGGAGCAAT
1 TTATTTTTCAAAAGTTATGGTGCCTCTACTTAGAGGAGCAAT
* * * * *
7774255 TTATTGTTCAAAAGTTGTGGAGCCTCTGCTTAGAAGAGC
1 TTATTTTTCAAAAGTTATGGTGCCTCTACTTAGAGGAGC
7774294 TTTGTTTATT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
42 63 0.89
43 8 0.11
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (42 bp):
TTATTTTTCAAAAGTTATGGTGCCTCTACTTAGAGGAGCAAT
Found at i:7774381 original size:19 final size:19
Alignment explanation
Indices: 7774334--7774384 Score: 93
Period size: 20 Copynumber: 2.6 Consensus size: 19
7774324 CTGTTTAGAG
7774334 GAGCTTTGTTTAAGTCGTT
1 GAGCTTTGTTTAAGTCGTT
7774353 GAGCCTTTGTTTAAGTCGTT
1 GAG-CTTTGTTTAAGTCGTT
7774373 GAGCTTTGTTTA
1 GAGCTTTGTTTA
7774385 TTTTTTCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 12 0.39
20 19 0.61
ACGTcount: A:0.16, C:0.12, G:0.25, T:0.47
Consensus pattern (19 bp):
GAGCTTTGTTTAAGTCGTT
Found at i:7774472 original size:44 final size:44
Alignment explanation
Indices: 7774413--7774754 Score: 340
Period size: 44 Copynumber: 7.9 Consensus size: 44
7774403 GCTTTTGCTT
* * *
7774413 AAGTCGTTGAGCCTCTATTTAGAGAAGCTTTATTTATTTTTCCA
1 AAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCCA
* * * *
7774457 AAGTCACTGAGCCTCTATTTAGAGGAGATTTGTTTATTTTTCCA
1 AAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCCA
*
7774501 AAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCAA
1 AAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCCA
* * * *
7774545 AAGTCGTTGAGCCTCTGTTTAGAGGAGTTTTGTTTATTATT-CA
1 AAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCCA
** * *
7774588 AAGTTGTTGAGCCTATGTTTAGAGGAGCTTTATTTATTTTTTCAA
1 AAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTA-TTTTTCCA
* * * * *
7774633 AAGTCATTGAGCCTTTGATTAGGGGAAC--CATTTA-TTTTCCA
1 AAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCCA
* * * * * *
7774674 AAGTCGTTGAGCCTATGATTAAATGAGC--CATTTA-TTTT-CA
1 AAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCCA
* * * *
7774714 AGGTCCTGGAGCCTCTGTTTAGAGGAGCTTTGTTTATTTTT
1 AAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTT
7774755 TTCAAAGTGG
Statistics
Matches: 249, Mismatches: 44, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
40 23 0.09
41 38 0.15
42 4 0.02
43 42 0.17
44 119 0.48
45 23 0.09
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.42
Consensus pattern (44 bp):
AAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTTCCA
Found at i:7774629 original size:132 final size:129
Alignment explanation
Indices: 7774413--7774789 Score: 386
Period size: 132 Copynumber: 2.9 Consensus size: 129
7774403 GCTTTTGCTT
* * * *
7774413 AAGTCGTTGAGCCTCTATTTAGAGAAGCTTTATTTATTTTTCCAAAGTCACTGAGCCTCTATTTA
1 AAGTCGTTGAGCCTCTGTTTAGAGGAG-TTTATTTA-TTTT-CAAAGTCATTGAGCCTCTGTTTA
* * *
7774478 GAGGAGATTTGTTTA-TTTTTCCAAAGTCATTGAGCCTCTGTTTAGAGGAGCTTTATTTATTTTT
63 GAGGAGCTTTGTTTATTTTTTCCAAAGTCATTGAGCCTTTGATTAGAGGAGCTTTATTTA-TTTT
7774542 CAA
127 CAA
* ** *
7774545 AAGTCGTTGAGCCTCTGTTTAGAGGAGTTTTGTTTATTATTCAAAGTTGTTGAGCCTATGTTTAG
1 AAGTCGTTGAGCCTCTGTTTAGAGGAG-TTTATTTATT-TTCAAAGTCATTGAGCCTCTGTTTAG
* * * * * *
7774610 AGGAGCTTTATTTATTTTTTCAAAAGTCATTGAGCCTTTGATTAGGGGAAC--CATTTATTTTCC
64 AGGAGCTTTGTTTATTTTTTCCAAAGTCATTGAGCCTTTGATTAGAGGAGCTTTATTTATTTTCA
7774673 A
129 A
* * * * ** * * *
7774674 AAGTCGTTGAGCCTATGATTAAATGAG-CCATTTATTTTCAAGGTCCTGGAGCCTCTGTTTAGAG
1 AAGTCGTTGAGCCTCTGTTTAGAGGAGTTTATTTATTTTCAAAGTCATTGAGCCTCTGTTTAGAG
* ** *
7774738 GAGCTTTGTTTATTTTTTTCAAAGTGGTTAAGCCTTT-ACTTAGAGGAGCTTT
66 GAGCTTTGTTTATTTTTTCCAAAGTCATTGAGCCTTTGA-TTAGAGGAGCTTT
7774790 GATCAAAATT
Statistics
Matches: 201, Mismatches: 39, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
125 1 0.00
126 62 0.31
127 6 0.03
129 29 0.14
130 5 0.02
131 33 0.16
132 65 0.32
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.42
Consensus pattern (129 bp):
AAGTCGTTGAGCCTCTGTTTAGAGGAGTTTATTTATTTTCAAAGTCATTGAGCCTCTGTTTAGAG
GAGCTTTGTTTATTTTTTCCAAAGTCATTGAGCCTTTGATTAGAGGAGCTTTATTTATTTTCAA
Found at i:7774684 original size:41 final size:41
Alignment explanation
Indices: 7774626--7774714 Score: 115
Period size: 41 Copynumber: 2.2 Consensus size: 41
7774616 TTTATTTATT
* **
7774626 TTTTCAAAAGTCATTGAGCCTTTGATTAGGGGAACCATTTA
1 TTTTCAAAAGTCATTGAGCCTATGATTAAAGGAACCATTTA
* * * *
7774667 TTTTCCAAAGTCGTTGAGCCTATGATTAAATGAGCCATTTA
1 TTTTCAAAAGTCATTGAGCCTATGATTAAAGGAACCATTTA
7774708 TTTTCAA
1 TTTTCAA
7774715 GGTCCTGGAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (41 bp):
TTTTCAAAAGTCATTGAGCCTATGATTAAAGGAACCATTTA
Found at i:7775021 original size:17 final size:16
Alignment explanation
Indices: 7774974--7775028 Score: 53
Period size: 17 Copynumber: 3.6 Consensus size: 16
7774964 TGATATGGGT
7774974 TTATTT-TT-TTAAT-
1 TTATTTATTATTAATA
* *
7774987 TTAATTATTATTATTA
1 TTATTTATTATTAATA
7775003 TTATTTATCTATTAATA
1 TTATTTAT-TATTAATA
*
7775020 TTTTTTATT
1 TTATTTATT
7775029 TATCTAATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
13 5 0.15
14 2 0.06
15 4 0.12
16 8 0.24
17 14 0.42
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (16 bp):
TTATTTATTATTAATA
Found at i:7775029 original size:21 final size:21
Alignment explanation
Indices: 7774978--7775062 Score: 86
Period size: 21 Copynumber: 4.0 Consensus size: 21
7774968 ATGGGTTTAT
*
7774978 TTTTTTAATTTAAT-TATTATTA
1 TTTTTT-ATTT-ATCTATTAATA
*
7775000 -TTATTATTTATCTATTAATA
1 TTTTTTATTTATCTATTAATA
*
7775020 TTTTTTATTTATCTAATT-ATT
1 TTTTTTATTTATCT-ATTAATA
*
7775041 TTTTTTAGTTATCTATTAATA
1 TTTTTTATTTATCTATTAATA
7775062 T
1 T
7775063 ATCTATCTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
19 2 0.04
20 14 0.26
21 34 0.64
22 3 0.06
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (21 bp):
TTTTTTATTTATCTATTAATA
Found at i:7775499 original size:20 final size:20
Alignment explanation
Indices: 7775474--7775511 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7775464 TGGGAACGGT
7775474 AAAGAGAAG-GAAGAGAAACA
1 AAAGAGAAGAG-AGAGAAACA
7775494 AAAGAGAAGAGAGAGAAA
1 AAAGAGAAGAGAGAGAAA
7775512 GAGGAAGGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.66, C:0.03, G:0.32, T:0.00
Consensus pattern (20 bp):
AAAGAGAAGAGAGAGAAACA
Found at i:7775858 original size:24 final size:24
Alignment explanation
Indices: 7775830--7775883 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
7775820 TAGATTAGAA
7775830 TTATTTAGTATTCCTTA-TTTTATT
1 TTATTTAGTA-TCCTTATTTTTATT
** *
7775854 TTATTTTTTATCTTTATTTTTATT
1 TTATTTAGTATCCTTATTTTTATT
7775878 TTATTT
1 TTATTT
7775884 TATTTTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.19, C:0.06, G:0.02, T:0.74
Consensus pattern (24 bp):
TTATTTAGTATCCTTATTTTTATT
Found at i:7775869 original size:6 final size:5
Alignment explanation
Indices: 7775844--7775889 Score: 56
Period size: 5 Copynumber: 8.4 Consensus size: 5
7775834 TTAGTATTCC
7775844 TTATT TTATT TTATTTT TTATCT TTATTT TTATT TTATT TTATT TT
1 TTATT TTATT TTA--TT TTAT-T TTA-TT TTATT TTATT TTATT TT
7775890 CTTTAAATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
5 23 0.62
6 8 0.22
7 6 0.16
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:7775968 original size:57 final size:56
Alignment explanation
Indices: 7775907--7776030 Score: 151
Period size: 56 Copynumber: 2.2 Consensus size: 56
7775897 TAAAATTCCA
* ** * *
7775907 AATTTTTCTT-GAAAATAAGTTTTCTAAAAATATTTTCGAGGAAAACTTGAAAGTATC
1 AATTTTTCTTAAAAAATAAAATTTCCAAAAACATTTT--AGGAAAACTTGAAAGTATC
* * *
7775964 AATTTTCCTTAAAAAATAAAATTTCCAAAAACATTTTAGGGAAAGTTGAAAGTATC
1 AATTTTTCTTAAAAAATAAAATTTCCAAAAACATTTTAGGAAAACTTGAAAGTATC
7776020 AATTTTTCTTA
1 AATTTTTCTTA
7776031 TATAAAAGCA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
56 27 0.47
57 9 0.16
58 21 0.37
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (56 bp):
AATTTTTCTTAAAAAATAAAATTTCCAAAAACATTTTAGGAAAACTTGAAAGTATC
Found at i:7778053 original size:2 final size:2
Alignment explanation
Indices: 7778046--7778078 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7778036 ATATTCACTG
7778046 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7778079 CTAGATCAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7779219 original size:14 final size:14
Alignment explanation
Indices: 7779202--7779229 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7779192 AAGTCCTTAA
7779202 TAAGGGTTATTTTG
1 TAAGGGTTATTTTG
7779216 TAAGGGTTATTTTG
1 TAAGGGTTATTTTG
7779230 AAAGAGTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (14 bp):
TAAGGGTTATTTTG
Found at i:7779292 original size:30 final size:30
Alignment explanation
Indices: 7779258--7779319 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
7779248 ATAAACTTTA
7779258 TTAGGTTACGCATCAAAAGCAAATTTGCCT
1 TTAGGTTACGCATCAAAAGCAAATTTGCCT
7779288 TTAGGTTACGCATCAAAAGCAAATTTGCCT
1 TTAGGTTACGCATCAAAAGCAAATTTGCCT
7779318 TT
1 TT
7779320 TATCTGGCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.32
Consensus pattern (30 bp):
TTAGGTTACGCATCAAAAGCAAATTTGCCT
Found at i:7780670 original size:130 final size:131
Alignment explanation
Indices: 7780472--7780869 Score: 678
Period size: 132 Copynumber: 3.1 Consensus size: 131
7780462 AGCTTGAATA
* * * **
7780472 TTTAATTTTTTTT-GGTATAGAAGTTTAATAATAT-AAAAAAGAGTTTAAATTATAAAATTTAAG
1 TTTAATTTTTTTTGGGTATAGAAGTCTAATAATATAAAAAAAAAGTTTAAATTACAATTTTTAAG
*
7780535 GAGTCTAATAATAAAAGAGTTCAAATTATAATTTATCTCAAT-AAAATTTAATAATAAAAAGTCA
66 AAGTCTAATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAATAAAAAGTCA
7780599 T
131 T
*
7780600 TTTAATTTTTTTTGGGTATGGAAGTCTAATAATATAAAAAAAAAGTTTAAATTACAATTTTTAAG
1 TTTAATTTTTTTTGGGTATAGAAGTCTAATAATATAAAAAAAAAGTTTAAATTACAATTTTTAAG
7780665 AAGTCTAATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAATAAAAAGT-A
66 AAGTCTAATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAATAAAAAGTCA
*
7780729 A
131 T
7780730 TTTAACTTTTTTTTGGGTATAGAAGTCTAATAATATAAAAAAAAGAGTTTAAATTACAATTTTTA
1 TTTAA-TTTTTTTTGGGTATAGAAGTCTAATAATATAAAAAAAA-AGTTTAAATTACAATTTTTA
7780795 AGAAGTCTAATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAATAAAAAGT
64 AGAAGTCTAATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAATAAAAAGT
7780860 CAT
129 CAT
7780863 TTTAATT
1 TTTAATT
7780870 AAAATTTATT
Statistics
Matches: 254, Mismatches: 10, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
128 13 0.05
129 19 0.07
130 72 0.28
131 57 0.22
132 87 0.34
133 6 0.02
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.39
Consensus pattern (131 bp):
TTTAATTTTTTTTGGGTATAGAAGTCTAATAATATAAAAAAAAAGTTTAAATTACAATTTTTAAG
AAGTCTAATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAATAAAAAGTCA
T
Found at i:7780692 original size:39 final size:41
Alignment explanation
Indices: 7780633--7780830 Score: 104
Period size: 39 Copynumber: 4.7 Consensus size: 41
7780623 GTCTAATAAT
* * *
7780633 ATAAAAAAAAAGTTTAAATTACAATTTT-TA-AGAAGTCTA
1 ATAATAAAAGAGTTCAAATTACAATTTTGTATAGAAGTCTA
* * * * *
7780672 ATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTA
1 ATAATAAAAGAGTTCAAATTACAATTT-TGT--ATAGAAGTCTA
* **
7780716 ATAATAAAA-AG-T-AATTTAACTTTTTTTTGGGTATAGAAGTCTA
1 ATAATAAAAGAGTTCAAATT-AC--AATTTT--GTATAGAAGTCTA
*
7780759 ATAATATAAAAAAAAGAGTTTAAATTACAATTTT-TA-AGAAGTCTA
1 AT-A-AT----AAAAGAGTTCAAATTACAATTTTGTATAGAAGTCTA
*
7780804 ATAATAAAAGAGTTCAAATTATAATTT
1 ATAATAAAAGAGTTCAAATTACAATTT
7780831 ATCTCAATAA
Statistics
Matches: 120, Mismatches: 20, Indels: 38
0.67 0.11 0.21
Matches are distributed among these distances:
39 43 0.36
40 1 0.01
41 5 0.04
42 2 0.02
43 16 0.13
44 20 0.17
45 14 0.12
46 2 0.02
49 8 0.07
50 2 0.02
51 3 0.03
52 4 0.03
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (41 bp):
ATAATAAAAGAGTTCAAATTACAATTTTGTATAGAAGTCTA
Found at i:7781042 original size:44 final size:45
Alignment explanation
Indices: 7780985--7781185 Score: 114
Period size: 47 Copynumber: 4.5 Consensus size: 45
7780975 TATTTATTCT
*
7780985 TTTTGGTATAGAAGTCTAATAATATAAAAAAAGAATTTAAATTACAA
1 TTTT-GTA-AGAAGTCTAATAATATAAAAAAAGAGTTTAAATTACAA
* * *
7781032 TTTT-TAAGAAGT-T--T-A-ATAATAAAAGAGTTCAAATTATAA
1 TTTTGTAAGAAGTCTAATAATATAAAAAAAGAGTTTAAATTACAA
* * *** * * * ****
7781071 TTTATCTCAATAAAAAT-TTAATA-ACAAAAAGTCATTTTAAATTTTTT
1 TTT-TGT-AAGAAGTCTAATAATATAAAAAAAG--AGTTTAAATTACAA
*
7781118 TTTTGGTATAGAAGTCTAATAGTATAAAAAAAGAGTTTAAATTACAA
1 TTTT-GTA-AGAAGTCTAATAATATAAAAAAAGAGTTTAAATTACAA
7781165 TTTT-TAAGAAGTCTAATAATA
1 TTTTGTAAGAAGTCTAATAATA
7781186 AAAGAGTTCA
Statistics
Matches: 113, Mismatches: 28, Indels: 29
0.66 0.16 0.17
Matches are distributed among these distances:
39 23 0.20
40 2 0.02
41 2 0.02
42 4 0.04
43 2 0.02
44 21 0.19
45 11 0.10
46 3 0.03
47 34 0.30
48 4 0.04
49 7 0.06
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.38
Consensus pattern (45 bp):
TTTTGTAAGAAGTCTAATAATATAAAAAAAGAGTTTAAATTACAA
Found at i:7781125 original size:133 final size:133
Alignment explanation
Indices: 7780984--7781243 Score: 466
Period size: 133 Copynumber: 2.0 Consensus size: 133
7780974 TTATTTATTC
*
7780984 TTTTTGGTATAGAAGTCTAATAATATAAAAAAAGAATTTAAATTACAATTTTTAAGAAGTTTAAT
1 TTTTTGGTATAGAAGTCTAATAATATAAAAAAAGAATTTAAATTACAATTTTTAAGAAGTCTAAT
7781049 AATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAACAAAAAGTCATTTTAAATT
66 AATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAACAAAAAGTCATTTTAAATT
7781114 TTT
131 TTT
* *
7781117 TTTTTGGTATAGAAGTCTAATAGTATAAAAAAAGAGTTTAAATTACAATTTTTAAGAAGTCTAAT
1 TTTTTGGTATAGAAGTCTAATAATATAAAAAAAGAATTTAAATTACAATTTTTAAGAAGTCTAAT
* * *
7781182 AATAAAAGAGTTCAAATTATGATTTATCTCAATAAAAATTTGATAATAAAAAGTCATTTTAA
66 AATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAACAAAAAGTCATTTTAA
7781244 TTAAAATTTA
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 121 1.00
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.38
Consensus pattern (133 bp):
TTTTTGGTATAGAAGTCTAATAATATAAAAAAAGAATTTAAATTACAATTTTTAAGAAGTCTAAT
AATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAACAAAAAGTCATTTTAAATT
TTT
Found at i:7781301 original size:376 final size:376
Alignment explanation
Indices: 7780608--7781306 Score: 1251
Period size: 376 Copynumber: 1.9 Consensus size: 376
7780598 ATTTTAATTT
*
7780608 TTTTTGGGTATGGAAGTCTAATAATATAAAAAAAAAGTTTAAATTACAATTTTTAAGAAGTCTAA
1 TTTTTGGGTATAGAAGTCTAATAATATAAAAAAAAAGTTTAAATTACAATTTTTAAGAAGTCTAA
*
7780673 TAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAATAAAAAGTAATTTAACTT
66 TAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAACAAAAAGTAATTTAACTT
7780738 TTTTTTGGGTATAGAAGTCTAATAATATAAAAAAAAGAGTTTAAATTACAATTTTTAAGAAGTCT
131 TTTTTTGGGTATAGAAGTCTAATAATATAAAAAAAAGAGTTTAAATTACAATTTTTAAGAAGTCT
7780803 AATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAATAAAAAGTCATTTTAA
196 AATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAATAAAAAGTCATTTTAA
*
7780868 TTAAAATTTATTAAAAATTTTACTAAGGATATTTTGATCGTTCATTATTATCACTTTTGATTTAC
261 TTAAAATTTATTAAAAAGTTTACTAAGGATATTTTGATCGTTCATTATTATCACTTTTGATTTAC
7780933 GCTTGATATTGTAATTGATTTCTCTAAAAGAGCTTGAATATTTATTTATTC
326 GCTTGATATTGTAATTGATTTCTCTAAAAGAGCTTGAATATTTATTTATTC
*
7780984 TTTTT-GGTATAGAAGTCTAATAATATAAAAAAAGAA-TTTAAATTACAATTTTTAAGAAGTTTA
1 TTTTTGGGTATAGAAGTCTAATAATATAAAAAAA-AAGTTTAAATTACAATTTTTAAGAAGTCTA
*
7781047 ATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAACAAAAAGTCATTTTAAA
65 ATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAACAAAAAGT-AATTT-AA
* * *
7781112 TTTTTTTTTTGGTATAGAAGTCTAATAGTAT-AAAAAAAGAGTTTAAATTACAATTTTTAAGAAG
128 CTTTTTTTTGGGTATAGAAGTCTAATAATATAAAAAAAAGAGTTTAAATTACAATTTTTAAGAAG
* *
7781176 TCTAATAATAAAAGAGTTCAAATTATGATTTATCTCAATAAAAATTTGATAATAAAAAGTCATTT
193 TCTAATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAATAAAAAGTCATTT
*
7781241 TAATTAAAATTTATTAAAAAGTTTACTAAGGATATTTTGGTCGTTCATTATTATCACTTTTGATT
258 TAATTAAAATTTATTAAAAAGTTTACTAAGGATATTTTGATCGTTCATTATTATCACTTTTGATT
7781306 T
323 T
7781307 CCTAAGGGAA
Statistics
Matches: 309, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
375 108 0.35
376 171 0.55
377 30 0.10
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (376 bp):
TTTTTGGGTATAGAAGTCTAATAATATAAAAAAAAAGTTTAAATTACAATTTTTAAGAAGTCTAA
TAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAACAAAAAGTAATTTAACTT
TTTTTTGGGTATAGAAGTCTAATAATATAAAAAAAAGAGTTTAAATTACAATTTTTAAGAAGTCT
AATAATAAAAGAGTTCAAATTATAATTTATCTCAATAAAAATTTAATAATAAAAAGTCATTTTAA
TTAAAATTTATTAAAAAGTTTACTAAGGATATTTTGATCGTTCATTATTATCACTTTTGATTTAC
GCTTGATATTGTAATTGATTTCTCTAAAAGAGCTTGAATATTTATTTATTC
Found at i:7781792 original size:212 final size:209
Alignment explanation
Indices: 7781399--7781821 Score: 505
Period size: 212 Copynumber: 2.0 Consensus size: 209
7781389 ATAAAGTAAC
** *
7781399 AATGAAGTAAAAAAAAAAAATTTCTGGCAACCTGATTCCAATTGTTAGAATGTTTACTTTTTCAA
1 AATGAAGTAAAAAAAAAAAATTTCTGGCAACCTGATTCCAATTGCCAAAATGTTTACTTTTTCAA
* * * ** *
7781464 AAAATTTGACAAACATGCGATTCTGTGATCCAAAAATCACTGAACAATCCTTTTTTTTTTTTCCA
66 AAAATTTGACAAACATGAGATTCGGTGACCCAAAAATCACCAAACAATCC--TTTTTTTTCTCCA
* * ** *
7781529 AAAAATAGCCCCAAAAATCCATAAAAAATCTCAAAAAATTTGAGATTTTGATCTCTTTCGATAGA
129 AAAAATAGCCCCAAAAATCCATAAAAAATCTAAAAAAATATGAGATTTTGATCTCCATCAATAGA
*
7781594 GCTAAATTGTATAGAG
194 GCTAAACTGTATAGAG
* * *
7781610 AATGAAGTCAAAAAAAAAAAATTTCAATTTTGGCAGCTTGATTCCAATTGCCAAAATGTTTTCTT
1 AATGAAGT-AAAAAAAAAAAATTTC-----TGGCAACCTGATTCCAATTGCCAAAATGTTTACTT
* * *
7781675 TTTGAAAAACTTTGACAAACATGAGATTCGGTGACCCAAAAGTCACCAAACAAT-C-TTTTTTTC
60 TTTCAAAAAATTTGACAAACATGAGATTCGGTGACCCAAAAATCACCAAACAATCCTTTTTTTTC
* * *
7781738 T-CATAGAAATAG-CCTAAAACTCCATAAAAAATCTAAAAAAATATGA-AGTTTTGATCTCCATC
125 TCCA-AAAAATAGCCCCAAAAATCCATAAAAAATCTAAAAAAATATGAGA-TTTTGATCTCCATC
7781800 AATAGAGCTAAACTGTATAGAG
188 AATAGAGCTAAACTGTATAGAG
7781822 CAAACATAAC
Statistics
Matches: 180, Mismatches: 24, Indels: 15
0.82 0.11 0.07
Matches are distributed among these distances:
211 9 0.05
212 80 0.44
213 15 0.08
216 1 0.01
217 75 0.42
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (209 bp):
AATGAAGTAAAAAAAAAAAATTTCTGGCAACCTGATTCCAATTGCCAAAATGTTTACTTTTTCAA
AAAATTTGACAAACATGAGATTCGGTGACCCAAAAATCACCAAACAATCCTTTTTTTTCTCCAAA
AAATAGCCCCAAAAATCCATAAAAAATCTAAAAAAATATGAGATTTTGATCTCCATCAATAGAGC
TAAACTGTATAGAG
Found at i:7782913 original size:52 final size:51
Alignment explanation
Indices: 7782826--7782928 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
7782816 ATAAGCATAT
* * * * *
7782826 AAATTTGCTTATTAAAAATTTTTTTTTTCTTAGAATTCTTTTTTTGTAAGTC
1 AAATTTGCCTATTAAAAATTTTTTTCTTCTGAGAATT-TTCTTTTATAAGTC
7782878 AAATTTGCCTATTAAAAATCTTTTTTCTT-TGAGAATTTTCTTTTATAAGTC
1 AAATTTGCCTATTAAAAAT-TTTTTTCTTCTGAGAATTTTCTTTTATAAGTC
7782929 TTTTTGTCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
51 12 0.27
52 25 0.56
53 8 0.18
ACGTcount: A:0.28, C:0.10, G:0.08, T:0.54
Consensus pattern (51 bp):
AAATTTGCCTATTAAAAATTTTTTTCTTCTGAGAATTTTCTTTTATAAGTC
Found at i:7797479 original size:117 final size:115
Alignment explanation
Indices: 7797185--7797466 Score: 381
Period size: 116 Copynumber: 2.4 Consensus size: 115
7797175 ACTATTGCTT
* * * *
7797185 TTGTACAAGAAAAATTGATACTTTCAACTTTTTTTC-AAAATATTTTTTTGAAACTTTAATTTCG
1 TTGT-CAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGAAAATTTATTTTCA
*
7797249 AGGAAAATTGATACTTTCAACTTTTTCTCAAAAAAGCCTTTTTTAGAAAATTA
65 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAAA--CTTTTTTAGAAAATTA
* * * *
7797302 TTGTCAA-AGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTAGAAAACTTATTTTCA
1 TTGTCAAGA-AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGAAAATTTATTTTCA
* *
7797366 AGGAAAATTGATACTTTTAACTTTTCCTCAAAAATA-TTTTTTAGAAATCTTA
65 AGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-ACTTTTTTAGAAA-ATTA
*
7797418 TTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTT
1 TTGTCAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTT
7797467 TGGAATTTTA
Statistics
Matches: 145, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
115 12 0.08
116 72 0.50
117 60 0.41
118 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.07, T:0.44
Consensus pattern (115 bp):
TTGTCAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGAAAATTTATTTTCAA
GGAAAATTGATACTTTCAACTTTTCCTCAAAAAACTTTTTTAGAAAATTA
Found at i:7797485 original size:58 final size:57
Alignment explanation
Indices: 7797190--7797487 Score: 327
Period size: 58 Copynumber: 5.1 Consensus size: 57
7797180 TGCTTTTGTA
*
7797190 CAAGAAAAATTGATACTTTCAACTTTTTTTC-AAAATATTTTTTTGAAA-CTTTAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGAAATC-TT-ATTT
* * * *
7797247 CGAGGAAAATTGATACTTTCAACTTTTTCTCAAAAA-AGCCTTTTTTAGAAA-ATTATTGT
1 CAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATA---TTTTTTTGAAATCTTATT-T
* * * *
7797306 CAA-AGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTAGAAAACTTATTTT
1 CAAGA-AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGAAATCTTA-TTT
* * * *
7797364 CAAGGAAAATTGATACTTTTAACTTTTCCTCAAAAATATTTTTTAGAAATCTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGAAATCTTA-TTT
* *
7797422 CAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTTGGAATTTTATTT
1 CAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATA-TTTTTTTGAAATCTTATTT
*
7797480 AAAGAAAA
1 CAAGAAAA
7797488 TCATTTTTAA
Statistics
Matches: 209, Mismatches: 21, Indels: 21
0.83 0.08 0.08
Matches are distributed among these distances:
57 40 0.19
58 109 0.52
59 49 0.23
60 11 0.05
ACGTcount: A:0.38, C:0.11, G:0.07, T:0.43
Consensus pattern (57 bp):
CAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGAAATCTTATTT
Found at i:7797588 original size:3 final size:3
Alignment explanation
Indices: 7797582--7797607 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7797572 CAACAACAAC
7797582 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
7797608 ATAAGAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7798354 original size:3 final size:3
Alignment explanation
Indices: 7798346--7798477 Score: 67
Period size: 3 Copynumber: 41.7 Consensus size: 3
7798336 ACCAACCAGA
*
7798346 AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT -AT ATAT ACATT AAT CGAT
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A-AT A-A-T AAT -AAT
* *
7798395 AA- ACAT AA- AAA AAT ATT AAT AGAT AAAT AGA- AAT AAT AAT AAT AGAT
1 AAT A-AT AAT AAT AAT AAT AAT A-AT -AAT A-AT AAT AAT AAT AAT A-AT
* * *
7798442 AAAT AAT AA- AAA AAT ATT AAT GGAT AAT AAT AAT AA
1 -AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AA
7798478 AGAAATATAT
Statistics
Matches: 102, Mismatches: 11, Indels: 32
0.70 0.08 0.22
Matches are distributed among these distances:
2 8 0.08
3 68 0.67
4 22 0.22
5 4 0.04
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:7798447 original size:27 final size:26
Alignment explanation
Indices: 7798352--7798518 Score: 93
Period size: 27 Copynumber: 6.5 Consensus size: 26
7798342 CAGAAATAAT
7798352 AATAATAATAATA-ATAAATAATA-A
1 AATAATAATAATAGATAAATAATAGA
* * *
7798376 TATATATACATTAATCGATAAA-CATA-A
1 AATA-ATA-A-TAATAGATAAATAATAGA
* *
7798403 AAAAATATTAATAGAT--A-AATAGA
1 AATAATAATAATAGATAAATAATAGA
7798426 AATAATAATAATAGATAAATAATA-A
1 AATAATAATAATAGATAAATAATAGA
* * *
7798451 AAAAATATTAATGGATAATAATAATAAAGA
1 AATAATAATAATAGAT-A-AATAAT--AGA
* * *
7798481 AAT-ATATTATTAGATAAATAATAATA
1 AATAATAATAATAGATAAATAAT-AGA
7798507 AATAA-AATAATA
1 AATAATAATAATA
7798519 TTAAATTAAA
Statistics
Matches: 110, Mismatches: 19, Indels: 26
0.71 0.12 0.17
Matches are distributed among these distances:
22 4 0.04
23 15 0.14
24 10 0.09
25 18 0.16
26 20 0.18
27 23 0.21
28 6 0.05
29 11 0.10
30 3 0.03
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (26 bp):
AATAATAATAATAGATAAATAATAGA
Found at i:7798507 original size:77 final size:74
Alignment explanation
Indices: 7798345--7798518 Score: 196
Period size: 77 Copynumber: 2.3 Consensus size: 74
7798335 AACCAACCAG
* *
7798345 AAATAATAATAATAATAATAATAAATAATAATATATATACATTAATCGATAAACATAAAAAAATA
1 AAATAATAATAATAATAATAATAAATAATAATATATAAACATTAATCGATAAAAATAAAAAAATA
7798410 TTAATAGAT
66 TTAATAGAT
* *
7798419 AAATAGA-AATAATAATAATAGATAAATAATAA-A-A-AAATATTAATGGATAATAATAATAAAG
1 AAATA-ATAATAATAATAATA-ATAAATAATAATATATAAACATTAATCGAT-A-AA-AATAAA-
*
7798480 AAATATATTATTAGAT
60 AAA-ATATTAATAGAT
7798496 AAATAATAATAAATAA-AATAATA
1 AAATAATAAT-AATAATAATAATA
7798519 TTAAATTAAA
Statistics
Matches: 86, Mismatches: 5, Indels: 16
0.80 0.05 0.15
Matches are distributed among these distances:
72 11 0.13
73 2 0.02
74 21 0.24
75 17 0.20
76 7 0.08
77 23 0.27
78 5 0.06
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.30
Consensus pattern (74 bp):
AAATAATAATAATAATAATAATAAATAATAATATATAAACATTAATCGATAAAAATAAAAAAATA
TTAATAGAT
Found at i:7798849 original size:12 final size:12
Alignment explanation
Indices: 7798832--7798856 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7798822 TCCTCTAAAC
7798832 AGAGGCTCAACA
1 AGAGGCTCAACA
7798844 AGAGGCTCAACA
1 AGAGGCTCAACA
7798856 A
1 A
7798857 CTTTGGAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.24, G:0.24, T:0.08
Consensus pattern (12 bp):
AGAGGCTCAACA
Found at i:7798856 original size:53 final size:54
Alignment explanation
Indices: 7798791--7798896 Score: 151
Period size: 54 Copynumber: 2.0 Consensus size: 54
7798781 TCTTCTAATC
* * * *
7798791 AGAGGCTTAACAACTTTGGAAA-ATAATTTGCTCCTCTAAACAGAGGCTCAACA
1 AGAGGCTCAACAACTTTGGAAAGATAAATGGCTCATCTAAACAGAGGCTCAACA
* *
7798844 AGAGGCTCAACAACTTTGGAAAGGTAAATGGCTCATCTAAATAGAGGCTCAAC
1 AGAGGCTCAACAACTTTGGAAAGATAAATGGCTCATCTAAACAGAGGCTCAAC
7798897 GACTTTGAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 21 0.46
54 25 0.54
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (54 bp):
AGAGGCTCAACAACTTTGGAAAGATAAATGGCTCATCTAAACAGAGGCTCAACA
Found at i:7798983 original size:83 final size:84
Alignment explanation
Indices: 7798844--7799031 Score: 272
Period size: 83 Copynumber: 2.3 Consensus size: 84
7798834 AGGCTCAACA
* *
7798844 AGAGGCTCAACAACTTTGGAAAGGTAAATGGCTCATCTAAATAGAGGCTCAACGACTTTGAAAA-
1 AGAGGCTCAACAACTTTGAAAAGATAAATGGCTCATCTAAATAGAGGCTCAACGACTTTGAAAAG
* *
7798908 ATAATTTGCTCATTTAAAT
66 ATAAATTGCTCATCTAAAT
* * *
7798927 AGAGGCTCAACAACTTTGAAAAGATAAATTGCTCTTCTAAATAGAGGTTCAACGACTTTGAAAAG
1 AGAGGCTCAACAACTTTGAAAAGATAAATGGCTCATCTAAATAGAGGCTCAACGACTTTGAAAAG
* *
7798992 GTAAATTGCTCCTCTAAAT
66 ATAAATTGCTCATCTAAAT
*
7799011 AGAGGCTCAACGAC-TTGAAAA
1 AGAGGCTCAACAACTTTGAAAA
7799032 AGTATATGCT
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
83 66 0.70
84 28 0.30
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (84 bp):
AGAGGCTCAACAACTTTGAAAAGATAAATGGCTCATCTAAATAGAGGCTCAACGACTTTGAAAAG
ATAAATTGCTCATCTAAAT
Found at i:7799033 original size:42 final size:42
Alignment explanation
Indices: 7798844--7799031 Score: 263
Period size: 42 Copynumber: 4.5 Consensus size: 42
7798834 AGGCTCAACA
* * *
7798844 AGAGGCTCAACAACTTTGGAAAGGTAAATGGCTCATCTAAAT
1 AGAGGCTCAACGACTTTGAAAAGGTAAATTGCTCATCTAAAT
* * *
7798886 AGAGGCTCAACGACTTTGAAAA-ATAATTTGCTCATTTAAAT
1 AGAGGCTCAACGACTTTGAAAAGGTAAATTGCTCATCTAAAT
* * *
7798927 AGAGGCTCAACAACTTTGAAAAGATAAATTGCTCTTCTAAAT
1 AGAGGCTCAACGACTTTGAAAAGGTAAATTGCTCATCTAAAT
* *
7798969 AGAGGTTCAACGACTTTGAAAAGGTAAATTGCTCCTCTAAAT
1 AGAGGCTCAACGACTTTGAAAAGGTAAATTGCTCATCTAAAT
7799011 AGAGGCTCAACGAC-TTGAAAA
1 AGAGGCTCAACGACTTTGAAAA
7799032 AGTATATGCT
Statistics
Matches: 130, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
41 43 0.33
42 87 0.67
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (42 bp):
AGAGGCTCAACGACTTTGAAAAGGTAAATTGCTCATCTAAAT
Found at i:7800051 original size:7 final size:7
Alignment explanation
Indices: 7800041--7800091 Score: 67
Period size: 7 Copynumber: 8.0 Consensus size: 7
7800031 TCATTTTTCA
7800041 TTCTTTT
1 TTCTTTT
7800048 TTCTTTT
1 TTCTTTT
7800055 TTC-TTT
1 TTCTTTT
7800061 TTC--TT
1 TTCTTTT
7800066 TT-TTTT
1 TTCTTTT
7800072 TTCTTTT
1 TTCTTTT
7800079 TTCTTTT
1 TTCTTTT
7800086 TT-TTTT
1 TTCTTTT
7800092 CGTGCCTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
5 4 0.10
6 14 0.34
7 23 0.56
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (7 bp):
TTCTTTT
Found at i:7800088 original size:18 final size:17
Alignment explanation
Indices: 7800046--7800092 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 17
7800036 TTTCATTCTT
7800046 TTTTCTTTTTTCTTTTTC
1 TTTT-TTTTTTCTTTTTC
7800064 TTTTTTTTTTCTTTTTTC
1 TTTTTTTTTTC-TTTTTC
7800082 TTTTTTTTTTC
1 TTTTTTTTTTC
7800093 GTGCCTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 7 0.25
18 21 0.75
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (17 bp):
TTTTTTTTTTCTTTTTC
Found at i:7800091 original size:24 final size:24
Alignment explanation
Indices: 7800034--7800091 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
7800024 TAAATCCTCA
* *
7800034 TTTTTCATTCTTTTTTCTTTTTTC
1 TTTTTCTTTTTTTTTTCTTTTTTC
7800058 TTTTTCTTTTTTTTTTCTTTTTTC
1 TTTTTCTTTTTTTTTTCTTTTTTC
7800082 TTTTT-TTTTT
1 TTTTTCTTTTT
7800092 CGTGCCTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 5 0.16
24 27 0.84
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.86
Consensus pattern (24 bp):
TTTTTCTTTTTTTTTTCTTTTTTC
Found at i:7800102 original size:31 final size:31
Alignment explanation
Indices: 7800041--7800110 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
7800031 TCATTTTTCA
**
7800041 TTCTTTTTTCTTTTTTCTTTTTCTTTTTTTT
1 TTCTTTTTTCTTTTTTCTTTTTCTCCTTTTT
7800072 TTCTTTTTTC-TTTTT-TTTTTCGTGCCTTTTT
1 TTCTTTTTTCTTTTTTCTTTTTC-T-CCTTTTT
*
7800103 TTCCTTTT
1 TTCTTTTT
7800111 AAGCATAGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 6 0.18
30 6 0.18
31 22 0.65
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (31 bp):
TTCTTTTTTCTTTTTTCTTTTTCTCCTTTTT
Found at i:7800104 original size:1 final size:1
Alignment explanation
Indices: 7800044--7800091 Score: 51
Period size: 1 Copynumber: 48.0 Consensus size: 1
7800034 TTTTTCATTC
* * * * *
7800044 TTTTTTCTTTTTTCTTTTTCTTTTTTTTTTCTTTTTTCTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
7800092 CGTGCCTTTT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (1 bp):
T
Found at i:7810667 original size:116 final size:116
Alignment explanation
Indices: 7810525--7810785 Score: 284
Period size: 117 Copynumber: 2.3 Consensus size: 116
7810515 TACTTTTGTG
* * * **
7810525 CAAGAAAAATTGATAC-ATTCAACTTTTCCCCAAAATATTTTTTTG-AAACTTTAATTTT-GTGA
1 CAAGAAAAATTAATACTTTTCAACTTTTCCCCAAAATATTTTTTAGAAAAC-TT-ATTTTCAAGA
* * *
7810587 AAAATTTATACTTTCAACTTTTTCTCAAAAAAACCTTTTTTAGAAAA-TTATTTT
64 AAAATTGATACTTTCAACTTTTCCTCAAAAAAA--TTTTTTAAAAAACTTATTTT
* *
7810641 CAA-AGAAAATTAATA-TTTTCAACTTTTTCTCGAAAATATTTTTTAGAAAACTTATTTTCAAGA
1 CAAGA-AAAATTAATACTTTTCAAC-TTTTCCCCAAAATATTTTTTAGAAAACTTATTTTCAAGA
* * *
7810704 AAAATTGATCCTTTTAACTTTTCCTCAAAAATATTTTTTAAAAAACTTATTTT
64 AAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTTAAAAAACTTATTTT
* *
7810757 CAGGAAAAATTGATACTTTT-AACTTTTCC
1 CAAGAAAAATTAATACTTTTCAACTTTTCC
7810786 TTAAAAATAT
Statistics
Matches: 121, Mismatches: 16, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
115 17 0.14
116 44 0.36
117 56 0.46
118 4 0.03
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.43
Consensus pattern (116 bp):
CAAGAAAAATTAATACTTTTCAACTTTTCCCCAAAATATTTTTTAGAAAACTTATTTTCAAGAAA
AATTGATACTTTCAACTTTTCCTCAAAAAAATTTTTTAAAAAACTTATTTT
Found at i:7810709 original size:58 final size:58
Alignment explanation
Indices: 7810525--7810795 Score: 268
Period size: 58 Copynumber: 4.7 Consensus size: 58
7810515 TACTTTTGTG
** * * *
7810525 CAAGAAAAATTGATACATTCAAC-TTTTCCCCAAAATATTTTTTTG-AAACTTTAATTTT
1 CAAGAAAAATTGATATTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAAC-TT-ATTTT
** * * *
7810583 -GTGAAAAATTTATACTTTCAACTTTTTCTCAAAAAAACCTTTTTTAGAAAA-TTATTTT
1 CAAGAAAAATTGATATTTTCAACTTTTTCTCAAAAATA--TTTTTTAGAAAACTTATTTT
* *
7810641 CAA-AGAAAATTAATATTTTCAACTTTTTCTCGAAAATATTTTTTAGAAAACTTATTTT
1 CAAGA-AAAATTGATATTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAACTTATTTT
* * *
7810699 CAAGAAAAATTGATCCTTTT-AACTTTTCCTCAAAAATATTTTTTAAAAAACTTATTTT
1 CAAGAAAAATTGAT-ATTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAACTTATTTT
* * *
7810757 CAGGAAAAATTGATACTTTT-AACTTTTCCTTAAAAATAT
1 CAAGAAAAATTGATA-TTTTCAACTTTTTCTCAAAAATAT
7810796 ATATTTTTGG
Statistics
Matches: 181, Mismatches: 22, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
57 30 0.17
58 105 0.58
59 36 0.20
60 7 0.04
61 3 0.02
ACGTcount: A:0.39, C:0.13, G:0.05, T:0.43
Consensus pattern (58 bp):
CAAGAAAAATTGATATTTTCAACTTTTTCTCAAAAATATTTTTTAGAAAACTTATTTT
Found at i:7811363 original size:24 final size:24
Alignment explanation
Indices: 7811327--7811372 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
7811317 AGAAAACTCT
7811327 AAAAATTCG-AAAACAAATTTTAAA
1 AAAAATTCGAAAAAC-AATTTTAAA
*
7811351 AAAAATTCTAAAAACAATTTTA
1 AAAAATTCGAAAAACAATTTTA
7811373 CTTTTGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.28
Consensus pattern (24 bp):
AAAAATTCGAAAAACAATTTTAAA
Found at i:7811612 original size:3 final size:3
Alignment explanation
Indices: 7811604--7811644 Score: 73
Period size: 3 Copynumber: 13.3 Consensus size: 3
7811594 AACCAACCAA
7811604 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT A
7811645 TATATACATT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:7811681 original size:24 final size:23
Alignment explanation
Indices: 7811654--7811749 Score: 104
Period size: 24 Copynumber: 4.0 Consensus size: 23
7811644 ATATATACAT
*
7811654 TAATCGATAAATATAAAAAAAGAA
1 TAATAGATAAATA-AAAAAAAGAA
7811678 TAATAGATAAATAAAAATAAA-AA
1 TAATAGATAAATAAAAA-AAAGAA
* *
7811701 TAATAGATAAATAATAAAAAATAT
1 TAATAGATAAATAA-AAAAAAGAA
*
7811725 TAATGGATAAATAATAAGAAAAGAA
1 TAATAGATAAATAA-AA-AAAAGAA
7811750 ATATATTATT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
23 23 0.37
24 35 0.56
25 5 0.08
ACGTcount: A:0.68, C:0.01, G:0.08, T:0.23
Consensus pattern (23 bp):
TAATAGATAAATAAAAAAAAGAA
Found at i:7811702 original size:20 final size:20
Alignment explanation
Indices: 7811679--7811720 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7811669 AAAAAAGAAT
7811679 AATAGATAAATAAA-AATAAA
1 AATA-ATAAATAAATAATAAA
*
7811699 AATAATAGATAAATAATAAA
1 AATAATAAATAAATAATAAA
7811719 AA
1 AA
7811721 ATATTAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (20 bp):
AATAATAAATAAATAATAAA
Found at i:7811785 original size:15 final size:15
Alignment explanation
Indices: 7811763--7811805 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
7811753 TATTATTAGC
7811763 TAAA-TAATAATTAA
1 TAAATTAATAATTAA
* *
7811777 TTAATTAATTATTAA
1 TAAATTAATAATTAA
7811792 TAAATTAA-AATTAA
1 TAAATTAATAATTAA
7811806 AAAAAAAATG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 8 0.33
15 16 0.67
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAATTAATAATTAA
Found at i:7813714 original size:24 final size:24
Alignment explanation
Indices: 7813687--7813733 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7813677 CTCACAGATA
7813687 GAAAGA-AAAAAAAATAAAATGAAG
1 GAAAGAGAAAAAAAA-AAAATGAAG
* *
7813711 GAAAGAGACAAAAGAAAAATGAA
1 GAAAGAGAAAAAAAAAAAATGAA
7813734 TGTCACAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.72, C:0.02, G:0.19, T:0.06
Consensus pattern (24 bp):
GAAAGAGAAAAAAAAAAAATGAAG
Found at i:7814110 original size:10 final size:9
Alignment explanation
Indices: 7814097--7814157 Score: 63
Period size: 9 Copynumber: 6.7 Consensus size: 9
7814087 AATGAAAACA
7814097 AAAAAAAATG
1 AAAAAAAA-G
7814107 AAAAAAAA-
1 AAAAAAAAG
*
7814115 ACAAAAATAGG
1 A-AAAAA-AAG
7814126 AAAAAAAAG
1 AAAAAAAAG
*
7814135 AAAAACAA-
1 AAAAAAAAG
7814143 AAAAAAAAG
1 AAAAAAAAG
7814152 AAAAAA
1 AAAAAA
7814158 TAAAAGAGTG
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
8 8 0.19
9 20 0.47
10 14 0.33
11 1 0.02
ACGTcount: A:0.85, C:0.03, G:0.08, T:0.03
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:7814111 original size:17 final size:16
Alignment explanation
Indices: 7814083--7814155 Score: 76
Period size: 16 Copynumber: 4.4 Consensus size: 16
7814073 CTAATAGATG
*
7814083 AAAAAATGAAAACAAA
1 AAAAAATGAAAAAAAA
7814099 AAAAAATGAAAAAAAA
1 AAAAAATGAAAAAAAA
7814115 ACAAAAATAGGAAAAAAAA
1 A-AAAAAT--GAAAAAAAA
* *
7814134 GAAAAA-CAAAAAAAA
1 AAAAAATGAAAAAAAA
7814149 AAGAAAA
1 AA-AAAA
7814156 AATAAAAGAG
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
15 9 0.18
16 20 0.41
17 6 0.12
18 5 0.10
19 9 0.18
ACGTcount: A:0.84, C:0.04, G:0.08, T:0.04
Consensus pattern (16 bp):
AAAAAATGAAAAAAAA
Found at i:7814145 original size:43 final size:44
Alignment explanation
Indices: 7814083--7814181 Score: 116
Period size: 43 Copynumber: 2.3 Consensus size: 44
7814073 CTAATAGATG
7814083 AAAAAATGAAAACAAAAAAAAATGAAA-AAAAAACAAAA-A-TAGGA
1 AAAAAATGAAAACAAAAAAAAA--AAAGAAAAAACAAAAGAGT-GGA
* * *
7814127 AAAAAAAGAAAA-ACAAAAAAAAAAGAAAAAATAAAAGAGTGGA
1 AAAAAATGAAAACAAAAAAAAAAAAGAAAAAACAAAAGAGTGGA
7814170 AAAAAATGAAAA
1 AAAAAATGAAAA
7814182 TGAGAGAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
41 3 0.06
42 10 0.21
43 23 0.48
44 12 0.25
ACGTcount: A:0.80, C:0.03, G:0.11, T:0.06
Consensus pattern (44 bp):
AAAAAATGAAAACAAAAAAAAAAAAGAAAAAACAAAAGAGTGGA
Found at i:7814162 original size:17 final size:17
Alignment explanation
Indices: 7814082--7814162 Score: 78
Period size: 17 Copynumber: 4.7 Consensus size: 17
7814072 ACTAATAGAT
* *
7814082 GAAAAAATGAAAACAAA
1 GAAAAAATAAAAAAAAA
7814099 -AAAAAATGAAAAAAAAA
1 GAAAAAAT-AAAAAAAAA
*
7814116 -CAAAAATAGGAAAAAAAA
1 GAAAAAATA--AAAAAAAA
7814134 GAAAAACA-AAAAAAAAA
1 GAAAAA-ATAAAAAAAAA
7814151 GAAAAAATAAAA
1 GAAAAAATAAAA
7814163 GAGTGGAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
16 9 0.17
17 31 0.57
18 8 0.15
19 5 0.09
20 1 0.02
ACGTcount: A:0.83, C:0.04, G:0.09, T:0.05
Consensus pattern (17 bp):
GAAAAAATAAAAAAAAA
Found at i:7815048 original size:63 final size:63
Alignment explanation
Indices: 7814897--7815028 Score: 158
Period size: 63 Copynumber: 2.1 Consensus size: 63
7814887 GCAAAATTTA
** * * * **
7814897 TTCTGAAATGGTTAGTGCTAAAAAACCTATGAGTGGTGACAAAATGACGAAGGAAGAAATTTG
1 TTCTGAAATGACTAATGCTAAGAAGCCTATGAGTGGTGACAAAATGACGAAGGAAGAAACGTG
* * *
7814960 TTCTGAAATGACTAATGCTAAGAAGCCTATGAGTGGTGACCAAATGATGGAGGACA-AAACGTG
1 TTCTGAAATGACTAATGCTAAGAAGCCTATGAGTGGTGACAAAATGACGAAGGA-AGAAACGTG
7815023 TTCTGA
1 TTCTGA
7815029 GATTGCTAAT
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
63 57 0.98
64 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.25
Consensus pattern (63 bp):
TTCTGAAATGACTAATGCTAAGAAGCCTATGAGTGGTGACAAAATGACGAAGGAAGAAACGTG
Found at i:7815466 original size:21 final size:21
Alignment explanation
Indices: 7815435--7815483 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
7815425 AAGTCCTGAA
7815435 TTTTCAAATGAAAAT-TTTTGAG
1 TTTT-AAATGAAAATATTTT-AG
*
7815457 TTTTAAATGAGAATATTTTAG
1 TTTTAAATGAAAATATTTTAG
*
7815478 TCTTAA
1 TTTTAA
7815484 GATGTTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 16 0.67
22 8 0.33
ACGTcount: A:0.37, C:0.04, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTTAAATGAAAATATTTTAG
Found at i:7815497 original size:32 final size:31
Alignment explanation
Indices: 7815456--7815515 Score: 93
Period size: 32 Copynumber: 1.9 Consensus size: 31
7815446 AAATTTTTGA
*
7815456 GTTTTAAATGAGAATATTTTAGTCTTAAGAT
1 GTTTTAAATGAGAATATTTAAGTCTTAAGAT
*
7815487 GTTTTCAAATGAGAATCTTTAAGTCTTAA
1 GTTTT-AAATGAGAATATTTAAGTCTTAA
7815516 ATGAGAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 5 0.19
32 21 0.81
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (31 bp):
GTTTTAAATGAGAATATTTAAGTCTTAAGAT
Found at i:7815538 original size:46 final size:46
Alignment explanation
Indices: 7815488--7815646 Score: 255
Period size: 46 Copynumber: 3.5 Consensus size: 46
7815478 TCTTAAGATG
* * *
7815488 TTTTCAAATGAGAATCTTTAAGTCTTAAATGAGAATTTTTAAGATA
1 TTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACA
* * *
7815534 TTTTCAAATAAGAAACTTTGAGTCTTAAATGATAATCTTTAAGACA
1 TTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACA
*
7815580 TTTTCAAATGAGAACCTTTGAGTCTTAAATGAGAATCTTTAAGACA
1 TTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACA
7815626 TTTTCAAATGAGAATCTTTGA
1 TTTTCAAATGAGAATCTTTGA
7815647 ATTTCAAAGA
Statistics
Matches: 103, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 103 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (46 bp):
TTTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATCTTTAAGACA
Found at i:7815588 original size:25 final size:25
Alignment explanation
Indices: 7815488--7815644 Score: 131
Period size: 21 Copynumber: 6.8 Consensus size: 25
7815478 TCTTAAGATG
7815488 TTTTCAAATGAGAATCTTTAAG---
1 TTTTCAAATGAGAATCTTTAAGACA
* * *
7815510 TCTT-AAATGAGAATTTTTAAGATA
1 TTTTCAAATGAGAATCTTTAAGACA
* * *
7815534 TTTTCAAATAAGAAACTTT--GA-G
1 TTTTCAAATGAGAATCTTTAAGACA
* *
7815556 TCTT-AAATGATAATCTTTAAGACA
1 TTTTCAAATGAGAATCTTTAAGACA
* *
7815580 TTTTCAAATGAGAACCTTT--GA-G
1 TTTTCAAATGAGAATCTTTAAGACA
*
7815602 TCTT-AAATGAGAATCTTTAAGACA
1 TTTTCAAATGAGAATCTTTAAGACA
7815626 TTTTCAAATGAGAATCTTT
1 TTTTCAAATGAGAATCTTT
7815645 GAATTTCAAA
Statistics
Matches: 103, Mismatches: 20, Indels: 21
0.72 0.14 0.15
Matches are distributed among these distances:
21 40 0.39
22 9 0.09
23 8 0.08
24 9 0.09
25 37 0.36
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (25 bp):
TTTTCAAATGAGAATCTTTAAGACA
Found at i:7815652 original size:21 final size:22
Alignment explanation
Indices: 7815488--7815672 Score: 121
Period size: 21 Copynumber: 8.2 Consensus size: 22
7815478 TCTTAAGATG
7815488 TTTTCAAATGAGAATCTTT-AA
1 TTTTCAAATGAGAATCTTTGAA
* *
7815509 GTCTT-AAATGAGAATTTTTAAGATA
1 -TTTTCAAATGAGAATCTTT--GA-A
* * *
7815534 TTTTCAAATAAGAAACTTTGAG
1 TTTTCAAATGAGAATCTTTGAA
* *
7815556 TCTT-AAATGATAATCTTTAAGACA
1 TTTTCAAATGAGAATCTTT--GA-A
* *
7815580 TTTTCAAATGAGAACCTTTGAG
1 TTTTCAAATGAGAATCTTTGAA
*
7815602 TCTT-AAATGAGAATCTTTAAGACA
1 TTTTCAAATGAGAATCTTT--GA-A
7815626 TTTTCAAATGAGAATCTTTGAA
1 TTTTCAAATGAGAATCTTTGAA
* *
7815648 -TTTCAAA-GAAGAATATTTGAG
1 TTTTCAAATG-AGAATCTTTGAA
7815669 TTTT
1 TTTT
7815673 GAGTTTTAAA
Statistics
Matches: 126, Mismatches: 22, Indels: 30
0.71 0.12 0.17
Matches are distributed among these distances:
20 1 0.01
21 54 0.43
22 13 0.10
23 10 0.08
24 10 0.08
25 38 0.30
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (22 bp):
TTTTCAAATGAGAATCTTTGAA
Found at i:7815747 original size:20 final size:20
Alignment explanation
Indices: 7815719--7815757 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7815709 AAGATTTATT
*
7815719 AAATAAGAACCTTTGAACTC
1 AAATAAGAACATTTGAACTC
* *
7815739 AAATGAGAAGATTTGAACT
1 AAATAAGAACATTTGAACT
7815758 TTTGGATGTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.13, G:0.15, T:0.26
Consensus pattern (20 bp):
AAATAAGAACATTTGAACTC
Found at i:7816120 original size:41 final size:41
Alignment explanation
Indices: 7816063--7816561 Score: 491
Period size: 41 Copynumber: 12.2 Consensus size: 41
7816053 CATCATTGTC
* * * * *
7816063 GAGGAGCATTTTATTTTTCAAAGTTGTGATACCTCTGTTTA
1 GAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTATTTA
7816104 GAGGAGCAATTTATTTTTCAAAAGTTATGGTGCCTCTATTTA
1 GAGGAGCAATTTATTTTTC-AAAGTTATGGTGCCTCTATTTA
* * * *
7816146 GAAGAGCATTTTATTTTTCAAAGTTGTGGTGTCTCTATTTA
1 GAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTATTTA
* * * *
7816187 AAGGAGC-ATTTACTTTTCAAAGTTATGGTGCTTCTGTTTA
1 GAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTATTTA
* * * *
7816227 GAGGAGTAATTTATTTTTCAAAATTATGGTGCTTCTGTTTA
1 GAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTATTTA
* * * * * **
7816268 GAAGAGTAATTTATTTTTCAAAATTGTAGTGCCTCCGTTTA
1 GAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTATTTA
* * * * *
7816309 AATGAGC-ATTTACTTTTCAAAGTCATGATGCCTCTATTTA
1 GAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTATTTA
* * * *
7816349 GAGGAGCAATTTACTTTTCAAAGTTGTAGTGCCTCTGTTTA
1 GAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTATTTA
* ** * *
7816390 TATAAGCATTTTACTTTTCAAAGTTATGGTGCCTCTATTTA
1 GAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTATTTA
* * * * *
7816431 GAAGAGTAATTTATTTTTCAAAATTGTGGTGCCTTTATTTA
1 GAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTATTTA
* * *
7816472 GAGGAGCATTTTACTTTTCAAAGTTGTGGTGCCTCTATTTA
1 GAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTATTTA
* * * * *
7816513 GAGGAG-TATTTATTTTTTTCAAAGTCATCGAGCCTCTGTTTA
1 GAGGAGCAATTTA--TTTTTCAAAGTTATGGTGCCTCTATTTA
7816555 GAGGAGC
1 GAGGAGC
7816562 TTTGTTTATT
Statistics
Matches: 378, Mismatches: 74, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
40 66 0.17
41 249 0.66
42 63 0.17
ACGTcount: A:0.26, C:0.12, G:0.19, T:0.42
Consensus pattern (41 bp):
GAGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTATTTA
Found at i:7816316 original size:122 final size:121
Alignment explanation
Indices: 7816066--7816529 Score: 500
Period size: 122 Copynumber: 3.8 Consensus size: 121
7816056 CATTGTCGAG
* * * * *
7816066 GAGCATTTTATTTTTCAAAGTTGTGATACCTCTGTTTAGAGGAGCAATTTATTTTTCAAAAGTTA
1 GAGCA-TTTACTTTTCAAAGTTATGATGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAA-TTA
* *
7816131 TGGTGCCTCTATTTAGAAGAGCATTTTATTTTTCAAAGTTGTGGTGTCTCTATTTAAA
64 TGGTGCCTCTATTTAGAAGAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAAA
* * * * *
7816189 GGAGCATTTACTTTTCAAAGTTATGGTGCTTCTGTTTAGAGGAGTAATTTATTTTTCAAAATTAT
1 -GAGCATTTACTTTTCAAAGTTATGATGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAATTAT
* * * * * **
7816254 GGTGCTTCTGTTTAGAAGAGTAATTTATTTTTCAAAATTGTAGTGCCTCCGTTTAAA
65 GGTGCCTCTATTTAGAAGAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAAA
* * *
7816311 TGAGCATTTACTTTTCAAAGTCATGATGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTTGT
1 -GAGCATTTACTTTTCAAAGTTATGATGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAATTAT
* * * * * *
7816376 AGTGCCTCTGTTTATATA-AGCATTTTACTTTTCAAAGTTATGGTGCCTCTATTTAGAA
65 GGTGCCTCTATTTAGA-AGAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTATTTA-AA
* * * * * * * * *
7816434 GAGTAATTTATTTTTCAAAATTGTGGTGCCTTTATTTAGAGGAGCATTTTACTTTTCAAAGTTGT
1 GAG-CATTTACTTTTCAAAGTTATGATGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAATTAT
* *
7816499 GGTGCCTCTATTTAGAGGAG-TATTTATTTTT
65 GGTGCCTCTATTTAGAAGAGCAATTTATTTTT
7816530 TTCAAAGTCA
Statistics
Matches: 286, Mismatches: 50, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
122 161 0.56
123 120 0.42
124 5 0.02
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (121 bp):
GAGCATTTACTTTTCAAAGTTATGATGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAATTATG
GTGCCTCTATTTAGAAGAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTATTTAAA
Found at i:7816762 original size:13 final size:13
Alignment explanation
Indices: 7816744--7816768 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7816734 TAGAAAGAAA
7816744 TGAAAAAAAAAAC
1 TGAAAAAAAAAAC
7816757 TGAAAAAAAAAA
1 TGAAAAAAAAAA
7816769 AGAGAAGAAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.08, T:0.08
Consensus pattern (13 bp):
TGAAAAAAAAAAC
Found at i:7817570 original size:12 final size:12
Alignment explanation
Indices: 7817555--7817592 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
7817545 TTTGGTATTT
7817555 TTTTATTTAGTA
1 TTTTATTTAGTA
7817567 TTTTATTTA-TA
1 TTTTATTTAGTA
*
7817578 TGTT-TTTAGTA
1 TTTTATTTAGTA
7817589 TTTT
1 TTTT
7817593 TGTTTGATGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
10 4 0.17
11 10 0.43
12 9 0.39
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.71
Consensus pattern (12 bp):
TTTTATTTAGTA
Found at i:7818149 original size:54 final size:53
Alignment explanation
Indices: 7817995--7818146 Score: 161
Period size: 51 Copynumber: 2.9 Consensus size: 53
7817985 TTTTCTTTCC
* * * *
7817995 TAAAAAAATATATATATTTCTAAATT-GATCCAAATGGTA-AAAAATTTAGAAA
1 TAAAAAAATAAAAATATTT-TAAATTGGATCCAAATGATAGAATAATTTAGAAA
* * *
7818047 TAAAAAAATAAAAAAATTTTAAATAGG-CCCAAATGATAG-ATAATTTAGAAA
1 TAAAAAAATAAAAATATTTTAAATTGGATCCAAATGATAGAATAATTTAGAAA
*
7818098 TTCAAAACAAA-AAAAATATTTTTAATTGGATCCAAATGATAGAATAATT
1 -T-AAAA-AAATAAAAATATTTTAAATTGGATCCAAATGATAGAATAATT
7818147 AGATATATTT
Statistics
Matches: 82, Mismatches: 11, Indels: 11
0.79 0.11 0.11
Matches are distributed among these distances:
51 25 0.30
52 18 0.22
53 19 0.23
54 14 0.17
55 6 0.07
ACGTcount: A:0.55, C:0.07, G:0.09, T:0.30
Consensus pattern (53 bp):
TAAAAAAATAAAAATATTTTAAATTGGATCCAAATGATAGAATAATTTAGAAA
Found at i:7818592 original size:12 final size:12
Alignment explanation
Indices: 7818541--7818594 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
7818531 GATCGATCAC
*
7818541 ATTTAATAAAAA
1 ATTTAATAATAA
7818553 ATTTAATAATAA
1 ATTTAATAATAA
* * *
7818565 TTTTATTTATTAA
1 ATTTA-ATAATAA
*
7818578 ATTTAATTATAA
1 ATTTAATAATAA
7818590 ATTTA
1 ATTTA
7818595 TAAATTTATA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
12 24 0.73
13 9 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
ATTTAATAATAA
Found at i:7820289 original size:22 final size:22
Alignment explanation
Indices: 7820261--7820328 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
7820251 TATATAGCCA
7820261 AATATAAATTTATTTATTTATT
1 AATATAAATTTATTTATTTATT
*
7820283 AATATAAA-TTA-TAATTTTATT
1 AATATAAATTTATTTA-TTTATT
* * *
7820304 ATGTATAAATGTATTTTTTTATT
1 A-ATATAAATTTATTTATTTATT
7820327 AA
1 AA
7820329 ATTAAAGTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
20 2 0.06
21 10 0.28
22 14 0.39
23 9 0.25
24 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (22 bp):
AATATAAATTTATTTATTTATT
Found at i:7820301 original size:21 final size:22
Alignment explanation
Indices: 7820277--7820328 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
7820267 AATTTATTTA
7820277 TTTATTAATATAAAT-TATAAT
1 TTTATTAATATAAATGTATAAT
* **
7820298 TTTATTATGTATAAATGTATTTT
1 TTTATTA-ATATAAATGTATAAT
7820321 TTTATTAA
1 TTTATTAA
7820329 ATTAAAGTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 7 0.28
22 7 0.28
23 11 0.44
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (22 bp):
TTTATTAATATAAATGTATAAT
Found at i:7820944 original size:14 final size:14
Alignment explanation
Indices: 7820927--7820975 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 14
7820917 TTTATCTAAT
7820927 AAAAAATGAAACCA
1 AAAAAATGAAACCA
* *
7820941 AAAAAATTAAA-AA
1 AAAAAATGAAACCA
*
7820954 GAAAAAAAGAAACCA
1 -AAAAAATGAAACCA
7820969 AAAAAAT
1 AAAAAAT
7820976 CAAAAGCTTT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
13 1 0.04
14 25 0.93
15 1 0.04
ACGTcount: A:0.78, C:0.08, G:0.06, T:0.08
Consensus pattern (14 bp):
AAAAAATGAAACCA
Found at i:7820958 original size:28 final size:28
Alignment explanation
Indices: 7820927--7820980 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
7820917 TTTATCTAAT
* *
7820927 AAAAAATGAAACCAAAAAAATTAAAAAG
1 AAAAAAAGAAACCAAAAAAATCAAAAAG
7820955 AAAAAAAGAAACCAAAAAAATCAAAA
1 AAAAAAAGAAACCAAAAAAATCAAAA
7820981 GCTTTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.78, C:0.09, G:0.06, T:0.07
Consensus pattern (28 bp):
AAAAAAAGAAACCAAAAAAATCAAAAAG
Found at i:7821252 original size:14 final size:14
Alignment explanation
Indices: 7821235--7821264 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7821225 TTTATCTAAT
*
7821235 AAAAAATTAAATTA
1 AAAAAATCAAATTA
7821249 AAAAAATCAAATTA
1 AAAAAATCAAATTA
7821263 AA
1 AA
7821265 TATTAGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAAATCAAATTA
Found at i:7821340 original size:27 final size:30
Alignment explanation
Indices: 7821274--7821344 Score: 85
Period size: 27 Copynumber: 2.5 Consensus size: 30
7821264 ATATTAGAAA
*
7821274 AAAAATAAAAAATAGATTTAAAATTAAATT
1 AAAAATAAAAAATAGATTTAAAAATAAATT
* *
7821304 AAAAACAAAAAA-A-TTTTAAAAAT-AATT
1 AAAAATAAAAAATAGATTTAAAAATAAATT
*
7821331 TAAAATAAAAAATA
1 AAAAATAAAAAATA
7821345 TAAATGTTAC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 14 0.40
28 9 0.26
29 1 0.03
30 11 0.31
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.27
Consensus pattern (30 bp):
AAAAATAAAAAATAGATTTAAAAATAAATT
Found at i:7821341 original size:28 final size:29
Alignment explanation
Indices: 7821275--7821344 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 29
7821265 TATTAGAAAA
*
7821275 AAAATAAAAAATAGATTTAAAATTAAATT
1 AAAATAAAAAATAGATTTAAAAATAAATT
*
7821304 AAAA-ACAAAAA-A-ATTTTAAAAATAATTT
1 AAAATA-AAAAATAGA-TTTAAAAATAAATT
7821332 AAAATAAAAAATA
1 AAAATAAAAAATA
7821345 TAAATGTTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
27 1 0.03
28 23 0.66
29 11 0.31
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.27
Consensus pattern (29 bp):
AAAATAAAAAATAGATTTAAAAATAAATT
Found at i:7823215 original size:2 final size:2
Alignment explanation
Indices: 7823208--7823236 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7823198 AAGCTCTTAA
7823208 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7823237 CACACACGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7823713 original size:17 final size:17
Alignment explanation
Indices: 7823691--7823724 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
7823681 CCTTCCTCCC
7823691 TATTTTTATTTTT-ATTT
1 TATTTTT-TTTTTCATTT
7823708 TATTTTTTTTTTCATTT
1 TATTTTTTTTTTCATTT
7823725 CTTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (17 bp):
TATTTTTTTTTTCATTT
Found at i:7823760 original size:7 final size:7
Alignment explanation
Indices: 7823748--7823774 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7823738 TAATGATAAA
7823748 ATAAAAT
1 ATAAAAT
7823755 ATAAAAT
1 ATAAAAT
7823762 ATAAAAT
1 ATAAAAT
7823769 ATAAAA
1 ATAAAA
7823775 AAAATCAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (7 bp):
ATAAAAT
Found at i:7829027 original size:12 final size:12
Alignment explanation
Indices: 7829012--7829057 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
7829002 TTTATTAGAT
*
7829012 ATAAATTATTAT
1 ATAAATTATTAA
7829024 ATAAATTAATTAA
1 ATAAATT-ATTAA
7829037 ATTAAATT-TTAA
1 A-TAAATTATTAA
7829049 AT-AATTATT
1 ATAAATTATT
7829058 TTTATATTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
10 4 0.13
11 3 0.10
12 12 0.40
13 5 0.17
14 6 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATAAATTATTAA
Found at i:7829039 original size:21 final size:22
Alignment explanation
Indices: 7828990--7829040 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
7828980 GCGTTATAAT
**
7828990 TTAAATT-TTATATTTATTAGA
1 TTAAATTATTATATAAATTAGA
7829011 TATAAATTATTATATAAATTA-A
1 T-TAAATTATTATATAAATTAGA
7829033 TTAAATTA
1 TTAAATTA
7829041 AATTTTAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 8 0.31
22 8 0.31
23 10 0.38
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TTAAATTATTATATAAATTAGA
Found at i:7832551 original size:81 final size:81
Alignment explanation
Indices: 7832401--7832553 Score: 189
Period size: 81 Copynumber: 1.9 Consensus size: 81
7832391 AATCAAAATG
* * * * **
7832401 ACATAAGTATGGTGAACCACATGAGTATGTACTTGTTTAAGTTGAAATACTTTATAAGATTAGAG
1 ACATAAGTATAGTAAACCACATGAGTATGCAATTGTTTAAGTTGAAATACTCCATAAGATTAGAG
7832466 AAAAATAAATGCATCC
66 AAAAATAAATGCATCC
* * ** *
7832482 ACATAGGTATAGTAAACCACATGGGTATGCAATTGTTTGGGTTGAAAATACTCCATAAGATTATA
1 ACATAAGTATAGTAAACCACATGAGTATGCAATTGTTTAAGTTG-AAATACTCCATAAGATTAGA
*
7832547 AAAAAAT
65 GAAAAAT
7832554 GAAAGGGTCC
Statistics
Matches: 59, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
81 36 0.61
82 23 0.39
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (81 bp):
ACATAAGTATAGTAAACCACATGAGTATGCAATTGTTTAAGTTGAAATACTCCATAAGATTAGAG
AAAAATAAATGCATCC
Found at i:7839874 original size:21 final size:20
Alignment explanation
Indices: 7839848--7839893 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
7839838 GTAGGCACCA
*
7839848 ATTTATTCCTTATTATTATTT
1 ATTTATTCATTATTATTA-TT
*
7839869 ATTTATTTATTATTATTATT
1 ATTTATTCATTATTATTATT
7839889 ATTTA
1 ATTTA
7839894 AAAAAAGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTTATTCATTATTATTATT
Found at i:7840775 original size:16 final size:13
Alignment explanation
Indices: 7840742--7840767 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7840732 TTTTGATTTT
7840742 TTATTTTTTTATA
1 TTATTTTTTTATA
7840755 TTATTTTTTTATA
1 TTATTTTTTTATA
7840768 ATGTTATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATTTTTTTATA
Found at i:7840788 original size:9 final size:9
Alignment explanation
Indices: 7840774--7840806 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
7840764 TATAATGTTA
7840774 TTATTATTG
1 TTATTATTG
7840783 TTATTATTG
1 TTATTATTG
7840792 TTATT-TTG
1 TTATTATTG
7840800 -TATTATT
1 TTATTATT
7840807 ACTGGTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 4 0.17
8 5 0.22
9 14 0.61
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.70
Consensus pattern (9 bp):
TTATTATTG
Found at i:7841025 original size:17 final size:17
Alignment explanation
Indices: 7841005--7841037 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7840995 AAAAATTTTG
7841005 CTAAAAAATAATAAATT
1 CTAAAAAATAATAAATT
*
7841022 CTAAAAAATGATAAAT
1 CTAAAAAATAATAAAT
7841038 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.64, C:0.06, G:0.03, T:0.27
Consensus pattern (17 bp):
CTAAAAAATAATAAATT
Found at i:7846990 original size:69 final size:69
Alignment explanation
Indices: 7846903--7847057 Score: 267
Period size: 69 Copynumber: 2.2 Consensus size: 69
7846893 GTCTTACCGA
7846903 ATGAATTTTGAGCCTGTTACCATCTTTTATGAAAACAAACC-AAGTATTAAGGTTAATAAGCCAG
1 ATGAATTTTGAGCCTGTTACCATCTTTTATGAAAACAAACCGAA-TATTAAGGTTAATAAGCCAG
7846967 TTCAT
65 TTCAT
* * *
7846972 ATGAATTTTGATCCTGTTACCATCTTTTATGAAGACAAACCGAATGTTAAGGTTAATAAGCCAGT
1 ATGAATTTTGAGCCTGTTACCATCTTTTATGAAAACAAACCGAATATTAAGGTTAATAAGCCAGT
7847037 TCAT
66 TCAT
7847041 ATGAATTTTGAGCCTGT
1 ATGAATTTTGAGCCTGT
7847058 CATGATTTTT
Statistics
Matches: 81, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
69 79 0.98
70 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (69 bp):
ATGAATTTTGAGCCTGTTACCATCTTTTATGAAAACAAACCGAATATTAAGGTTAATAAGCCAGT
TCAT
Found at i:7852377 original size:17 final size:17
Alignment explanation
Indices: 7852357--7852394 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7852347 AACAAAAAAA
7852357 AAAAGAAA-ATTGAGTTG
1 AAAAGAAATA-TGAGTTG
*
7852374 AAAAGATATATGAGTTG
1 AAAAGAAATATGAGTTG
7852391 AAAA
1 AAAA
7852395 CCTGAAAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 18 0.95
18 1 0.05
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (17 bp):
AAAAGAAATATGAGTTG
Found at i:7853341 original size:46 final size:46
Alignment explanation
Indices: 7853252--7853341 Score: 108
Period size: 46 Copynumber: 2.0 Consensus size: 46
7853242 ATTTTTTGAA
* ****
7853252 TTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCTTTTTTTTTTTAATT
1 TTTAAAGTTCGTTGCCTCTGGTCAAAGGAGCTTTTGAAATTTAATT
* * *
7853298 TTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTGAAATTTAA
1 TTTAAAGTTCGTTGCCTCTGGTCAAAGGAGCTTTTGAAATTTAA
7853342 AGTTTGTTGC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.22, C:0.10, G:0.20, T:0.48
Consensus pattern (46 bp):
TTTAAAGTTCGTTGCCTCTGGTCAAAGGAGCTTTTGAAATTTAATT
Found at i:7853521 original size:39 final size:39
Alignment explanation
Indices: 7853467--7853691 Score: 280
Period size: 39 Copynumber: 5.8 Consensus size: 39
7853457 AAATCTTTAG
*
7853467 TTTAAAGTTTTTTGCCTTTGGTTAAAGGAGCTTTTTGGA
1 TTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGGA
* *
7853506 TTTAAAGTTTGTTGCCTTTGGTGAAAGGAGC-TTTTAGA
1 TTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGGA
*
7853544 TTTAAAGTTTGTTTGCCTTTGGTTAAAAGAGCTTTTTGGA
1 TTTAAAGTTTG-TTGCCTTTGGTTAAAGGAGCTTTTTGGA
*
7853584 TTTAAAGTTTGTTGCCTTTGGTGAGAA-GAGC-TTTTGGAA
1 TTTAAAGTTTGTTGCCTTTGGTTA-AAGGAGCTTTTTGG-A
* * *
7853623 TTTAGAGTTTGATGCCTTTAGTTAAAGGAGCTTTTAT--A
1 TTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTT-TGGA
* **
7853661 TTTAAAGTTTGTTGCCTCTATTTAAAGGAGC
1 TTTAAAGTTTGTTGCCTTTGGTTAAAGGAGC
7853692 ATTTAAAAAA
Statistics
Matches: 164, Mismatches: 15, Indels: 15
0.85 0.08 0.08
Matches are distributed among these distances:
38 53 0.32
39 88 0.54
40 22 0.13
41 1 0.01
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (39 bp):
TTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGGA
Found at i:7853595 original size:78 final size:78
Alignment explanation
Indices: 7853462--7853677 Score: 318
Period size: 78 Copynumber: 2.8 Consensus size: 78
7853452 CTCTCAAATC
7853462 TTTAG-TTTAAAGTTT-TTTGCCTTTGGTTAAAGGAGCTTTTTGGATTTAAAGTTTGTTGCCTTT
1 TTTAGATTTAAAGTTTGTTTGCCTTTGGTTAAAGGAGCTTTTTGGATTTAAAGTTTGTTGCCTTT
7853525 GGTGA-AAGGAGCT
66 GGTGAGAA-GAGCT
*
7853538 TTTAGATTTAAAGTTTGTTTGCCTTTGGTTAAAAGAGCTTTTTGGATTTAAAGTTTGTTGCCTTT
1 TTTAGATTTAAAGTTTGTTTGCCTTTGGTTAAAGGAGCTTTTTGGATTTAAAGTTTGTTGCCTTT
7853603 GGTGAGAAGAGCT
66 GGTGAGAAGAGCT
* * * *
7853616 TTTGGAATTTAGAGTTTG-ATGCCTTTAGTTAAAGGAGCTTTTAT--ATTTAAAGTTTGTTGCCT
1 TTTAG-ATTTAAAGTTTGTTTGCCTTTGGTTAAAGGAGCTTTT-TGGATTTAAAGTTTGTTGCCT
7853678 CTATTTAAAG
Statistics
Matches: 129, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
76 5 0.04
77 28 0.22
78 82 0.64
79 14 0.11
ACGTcount: A:0.23, C:0.08, G:0.24, T:0.46
Consensus pattern (78 bp):
TTTAGATTTAAAGTTTGTTTGCCTTTGGTTAAAGGAGCTTTTTGGATTTAAAGTTTGTTGCCTTT
GGTGAGAAGAGCT
Found at i:7853673 original size:117 final size:116
Alignment explanation
Indices: 7853467--7853677 Score: 318
Period size: 117 Copynumber: 1.8 Consensus size: 116
7853457 AAATCTTTAG
* * * *
7853467 TTTAAAGTTTTTTGCCTTTGGTTAAAGGAGCTTTTTGGATTTAAAGTTTGTTGCCTTTGGTGAAA
1 TTTAAAGTTTGTTGCCTTTGGTGAAAGGAGCTTTTTGGATTTAAAGTTTGATGCCTTTAGTGAAA
7853532 GGAGCTTTTAGATTTAAAGTTTGTTTGCCTTTGGTTAAAAGAGCTTTTTGGA
66 GGAGCTTTTAGATTTAAAGTTTG-TTGCCTTTGGTTAAAAGAGCTTTTTGGA
* *
7853584 TTTAAAGTTTGTTGCCTTTGGTGAGAA-GAGC-TTTTGGAATTTAGAGTTTGATGCCTTTAGTTA
1 TTTAAAGTTTGTTGCCTTTGGTGA-AAGGAGCTTTTTGG-ATTTAAAGTTTGATGCCTTTAGTGA
*
7853647 AAGGAGCTTTTATATTTAAAGTTTGTTGCCT
64 AAGGAGCTTTTAGATTTAAAGTTTGTTGCCT
7853678 CTATTTAAAG
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
116 12 0.14
117 71 0.84
118 2 0.02
ACGTcount: A:0.23, C:0.08, G:0.24, T:0.45
Consensus pattern (116 bp):
TTTAAAGTTTGTTGCCTTTGGTGAAAGGAGCTTTTTGGATTTAAAGTTTGATGCCTTTAGTGAAA
GGAGCTTTTAGATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGCTTTTTGGA
Found at i:7853843 original size:3 final size:3
Alignment explanation
Indices: 7853835--7853894 Score: 84
Period size: 3 Copynumber: 20.0 Consensus size: 3
7853825 ATTTTATTCC
* * * *
7853835 TTA TTA TTA TTA TTA TTA TTA TTG TTG TTG TTG TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7853883 TTA TTA TTA TTA
1 TTA TTA TTA TTA
7853895 ATCTTTAAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7854739 original size:13 final size:13
Alignment explanation
Indices: 7854718--7854772 Score: 94
Period size: 13 Copynumber: 4.3 Consensus size: 13
7854708 AGGTTTTTCA
*
7854718 TTTTC-TTTTTAT
1 TTTTCATTTTGAT
7854730 TTTTCATTTTGAT
1 TTTTCATTTTGAT
7854743 TTTTCATTTTGAT
1 TTTTCATTTTGAT
7854756 TTTTCATTTTGAT
1 TTTTCATTTTGAT
7854769 TTTT
1 TTTT
7854773 TTATGTTATT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
12 5 0.12
13 36 0.88
ACGTcount: A:0.13, C:0.07, G:0.05, T:0.75
Consensus pattern (13 bp):
TTTTCATTTTGAT
Found at i:7854744 original size:6 final size:6
Alignment explanation
Indices: 7854712--7854771 Score: 50
Period size: 6 Copynumber: 9.7 Consensus size: 6
7854702 TTTCACAGGT
* * *
7854712 TTTTCA TTTTC- TTTTTA TTTTTCA TTTTGA TTTTTCA TTTTGA TTTTTCA
1 TTTTCA TTTTCA TTTTCA -TTTTCA TTTTCA -TTTTCA TTTTCA -TTTTCA
*
7854762 TTTTGA TTTT
1 TTTTCA TTTT
7854772 TTTATGTTAT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
5 4 0.09
6 24 0.56
7 15 0.35
ACGTcount: A:0.13, C:0.08, G:0.05, T:0.73
Consensus pattern (6 bp):
TTTTCA
Found at i:7854783 original size:26 final size:25
Alignment explanation
Indices: 7854726--7854785 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 25
7854716 CATTTTCTTT
*
7854726 TTATTTTTCATTTTGATTTTTCATT
1 TTATTTTTCATTTTGATTTTTCATG
*
7854751 TTGATTTTTCATTTTGATTTTTTTATG
1 TT-ATTTTTCATTTTGA-TTTTTCATG
7854778 TTATTTTT
1 TTATTTTT
7854786 TTTATAATGT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 2 0.06
26 20 0.65
27 9 0.29
ACGTcount: A:0.15, C:0.05, G:0.07, T:0.73
Consensus pattern (25 bp):
TTATTTTTCATTTTGATTTTTCATG
Found at i:7854869 original size:12 final size:13
Alignment explanation
Indices: 7854847--7854879 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7854837 AATAATTTTT
7854847 TAGAA-AAATAAA
1 TAGAATAAATAAA
7854859 TA-AATAAATAAA
1 TAGAATAAATAAA
7854871 TAGAATAAA
1 TAGAATAAA
7854880 AATAAAACTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 2 0.11
12 11 0.58
13 6 0.32
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (13 bp):
TAGAATAAATAAA
Found at i:7855067 original size:16 final size:17
Alignment explanation
Indices: 7855023--7855069 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
7855013 TAATTTTTGC
7855023 TAAAAAAT-AATAAATTA
1 TAAAAAATAAATAAA-TA
7855040 TAAAAATGATAAATAAA-A
1 TAAAAA--ATAAATAAATA
7855058 TAAAAAATAAAT
1 TAAAAAATAAAT
7855070 TGTTTAAATG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
16 6 0.22
17 6 0.22
18 7 0.26
19 2 0.07
20 6 0.22
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (17 bp):
TAAAAAATAAATAAATA
Found at i:7858072 original size:8 final size:8
Alignment explanation
Indices: 7857996--7858099 Score: 61
Period size: 8 Copynumber: 12.5 Consensus size: 8
7857986 TAATAGATAG
*
7857996 AAAAATGA
1 AAAAAAGA
7858004 AAAAAA-A
1 AAAAAAGA
*
7858011 AAAAAGGA
1 AAAAAAGA
*
7858019 AAAAAGGA
1 AAAAAAGA
*
7858027 AAAAAGGGA
1 AAAAA-AGA
7858036 AAAGAAAGA
1 AAA-AAAGA
7858045 AAAACCAA-A
1 AAAA--AAGA
7858054 AAAACAA-A
1 AAAA-AAGA
7858062 AAAAAAGA
1 AAAAAAGA
*
7858070 AAAAAATA
1 AAAAAAGA
*
7858078 AAAGAATGGA
1 AAA-AA-AGA
*
7858088 AAAAAATA
1 AAAAAAGA
7858096 AAAA
1 AAAA
7858100 TGAGAGAAAA
Statistics
Matches: 80, Mismatches: 8, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
7 8 0.10
8 44 0.55
9 20 0.25
10 8 0.10
ACGTcount: A:0.80, C:0.03, G:0.13, T:0.04
Consensus pattern (8 bp):
AAAAAAGA
Found at i:7858944 original size:63 final size:64
Alignment explanation
Indices: 7858807--7858990 Score: 189
Period size: 63 Copynumber: 2.9 Consensus size: 64
7858797 GATCAGTAGG
* * * * * *
7858807 CAAAATTTGTTCTAAAATGATTAGTGCTAAGAAACCTATGAGTGGTGATAAAATGAT-GAAGGA
1 CAAAATTTGTTCTGAAATGACTAATGCTAAGAAGCCTATGAGTGATGATCAAATGATGGAAGGA
*
7858870 -AGAAATTTGTTCTGAAATGACTAATGCTAAGAAGCCTATGAGTGATGACCAAATGATGGAA-GA
1 CA-AAATTTGTTCTGAAATGACTAATGCTAAGAAGCCTATGAGTGATGATCAAATGATGGAAGGA
* * * * * *
7858933 CAAAATGTGTTCTGAGATTG-CTAATGTTGAA-AAGCTTATGAATGATGATCAAGTGATG
1 CAAAATTTGTTCTGA-AATGACTAATGCT-AAGAAGCCTATGAGTGATGATCAAATGATG
7858991 AAAATGATGA
Statistics
Matches: 102, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
62 1 0.01
63 92 0.90
64 9 0.09
ACGTcount: A:0.39, C:0.09, G:0.23, T:0.29
Consensus pattern (64 bp):
CAAAATTTGTTCTGAAATGACTAATGCTAAGAAGCCTATGAGTGATGATCAAATGATGGAAGGA
Found at i:7859382 original size:21 final size:21
Alignment explanation
Indices: 7859358--7859532 Score: 100
Period size: 21 Copynumber: 7.8 Consensus size: 21
7859348 TCTTGAATTT
7859358 TTAAATGAGAATCTTTGAGTC
1 TTAAATGAGAATCTTTGAGTC
* *
7859379 TTAAATGAAAATCTTTGAGACGTT
1 TTAAATGAGAATCTTT--GA-GTC
*
7859403 TTCAAATGAGAA-CTTTTAAGTC
1 TT-AAATGAGAATC-TTTGAGTC
* * *
7859425 TTAAATGAAAATCTTTAAGATATT
1 TTAAATGAGAATCTTT--GA-GTC
* *
7859449 TTCAAATGAGAAACTTTGAGCC
1 TT-AAATGAGAATCTTTGAGTC
* * * *
7859471 TTAAATGAAAATCTTTAAAACATT
1 TTAAATGAGAATCTTT--GA-GTC
*
7859495 TTCAAATGAGAACCTTTGAGTC
1 TT-AAATGAGAATCTTTGAGTC
*
7859517 TTAAATAAGAATCTTT
1 TTAAATGAGAATCTTT
7859533 AAAACATTTT
Statistics
Matches: 113, Mismatches: 27, Indels: 28
0.67 0.16 0.17
Matches are distributed among these distances:
21 50 0.44
22 10 0.09
23 8 0.07
24 10 0.09
25 35 0.31
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.37
Consensus pattern (21 bp):
TTAAATGAGAATCTTTGAGTC
Found at i:7859409 original size:25 final size:25
Alignment explanation
Indices: 7859381--7859557 Score: 96
Period size: 25 Copynumber: 7.6 Consensus size: 25
7859371 TTTGAGTCTT
* *
7859381 AAATGAAAATCTTTGAGACGTTTTC
1 AAATGAAAATCTTTAAGACATTTTC
* *
7859406 AAATGAGAA-CTTTTAAG---TCTT-
1 AAATGAAAATC-TTTAAGACATTTTC
*
7859427 AAATGAAAATCTTTAAGATATTTTC
1 AAATGAAAATCTTTAAGACATTTTC
* *
7859452 AAATGAGAAA-CTTTGAG-C--CTT-
1 AAATGA-AAATCTTTAAGACATTTTC
*
7859473 AAATGAAAATCTTTAAAACATTTTC
1 AAATGAAAATCTTTAAGACATTTTC
* * * *
7859498 AAATGAGAACCTTT--GA-GTCTT-
1 AAATGAAAATCTTTAAGACATTTTC
*
7859519 AAAT-AAGAATCTTTAAAACATTTTC
1 AAATGAA-AATCTTTAAGACATTTTC
*
7859544 AAATGAGAATCTTT
1 AAATGAAAATCTTT
7859558 GAATTTTGAG
Statistics
Matches: 112, Mismatches: 22, Indels: 36
0.66 0.13 0.21
Matches are distributed among these distances:
20 4 0.04
21 35 0.31
22 10 0.09
23 2 0.02
24 9 0.08
25 48 0.43
26 4 0.04
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (25 bp):
AAATGAAAATCTTTAAGACATTTTC
Found at i:7859413 original size:46 final size:46
Alignment explanation
Indices: 7859354--7859559 Score: 290
Period size: 46 Copynumber: 4.5 Consensus size: 46
7859344 GAAGTCTTGA
* * *
7859354 ATTTTTAAATGAGAATCTTTGAGTCTTAAATGAAAATCTTTGAGAC
1 ATTTTCAAATGAGAATCTTTGAGTCTTAAATGAAAATCTTTAAAAC
* * * *
7859400 GTTTTCAAATGAGAA-CTTTTAAGTCTTAAATGAAAATCTTTAAGAT
1 ATTTTCAAATGAGAATC-TTTGAGTCTTAAATGAAAATCTTTAAAAC
* *
7859446 ATTTTCAAATGAGAAACTTTGAGCCTTAAATGAAAATCTTTAAAAC
1 ATTTTCAAATGAGAATCTTTGAGTCTTAAATGAAAATCTTTAAAAC
*
7859492 ATTTTCAAATGAGAACCTTTGAGTCTTAAAT-AAGAATCTTTAAAAC
1 ATTTTCAAATGAGAATCTTTGAGTCTTAAATGAA-AATCTTTAAAAC
7859538 ATTTTCAAATGAGAATCTTTGA
1 ATTTTCAAATGAGAATCTTTGA
7859560 ATTTTGAGTT
Statistics
Matches: 144, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
45 3 0.02
46 140 0.97
47 1 0.01
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.37
Consensus pattern (46 bp):
ATTTTCAAATGAGAATCTTTGAGTCTTAAATGAAAATCTTTAAAAC
Found at i:7860081 original size:41 final size:41
Alignment explanation
Indices: 7859959--7860383 Score: 460
Period size: 41 Copynumber: 10.4 Consensus size: 41
7859949 GATTGTCGAA
* * * * * *
7859959 GAGCATTTTATTTTCCAAAGTTGTGATACATCTGTTTAGAT
1 GAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAG
*
7860000 GAGCAATTTATTTTTCGAAAGTTATGGTGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTC-AAAGTTGTGGTGCCTCTGTTTAGAG
* * *
7860042 GAGCATTTTATTTTTCAAAATTGTGGTGCCTATGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAG
* *
7860083 GAGCAATTTATTTTTCAAAGTTGTAGTGCCTCTGTTTAAAG
1 GAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAG
** * *
7860124 GAGC-ATTTACTTTTT-AAAGTCATGGTGCCTCTGTTTATAA
1 GAGCAATTTA-TTTTTCAAAGTTGTGGTGCCTCTGTTTAGAG
* * *
7860164 GAACAATTTATTTTTCAAAGTTGTGGTGCCTATATTTAGAG
1 GAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAG
* * * *
7860205 GAGCAATCTACTTTTCAAAGTTATGATGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAG
* * ** ** *
7860246 GAGCATTTTACTTTTCAAAACTACGGTGCCTCTGTTTAGAA
1 GAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAG
* * *
7860287 GAGCAATTTATTTTTCAAAGTTTTGGTGCCTTTGTTTAGAT
1 GAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAG
* * **
7860328 GAGCATTTTACTTTTCAAAGTTGTAATGCCTCTGTTTAGAG
1 GAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAG
* *
7860369 AAGC-ATTCATTTTTC
1 GAGCAATTTATTTTTC
7860384 TCAAAGTCAT
Statistics
Matches: 319, Mismatches: 61, Indels: 9
0.82 0.16 0.02
Matches are distributed among these distances:
40 41 0.13
41 243 0.76
42 35 0.11
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (41 bp):
GAGCAATTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAG
Done.