Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 42 of 100
Found at i:7860325 original size:123 final size:123
Alignment explanation
Indices: 7859959--7860375 Score: 527
Period size: 123 Copynumber: 3.4 Consensus size: 123
7859949 GATTGTCGAA
* * * * * * **
7859959 GAGCATTTTA-TTTTCCAAAGTTGTGATACATCTGTTTAGATGAGCAATTTATTTTTCGAAAGTT
1 GAGCAATTTACTTTT-CAAAGTTGTGATGCCTCTGTTTAGAGGAGCATTTTACTTTTC-AAAACT
* * *
7860023 ATGGTGCCTCTGTTTAGAGGAGCATTTTATTTTTCAAAATTGTGGTGCCTATGTTTAGAG
64 ATGGTGCCTCTGTTTAGAAGAGCAATTTATTTTTCAAAGTTGTGGTGCCTATGTTTAGAG
* * * *
7860083 GAGCAATTTATTTTTCAAAGTTGT-AGTGCCTCTGTTTAAAGGAGCA-TTTACTTTT-TAAAGTC
1 GAGCAATTTACTTTTCAAAGTTGTGA-TGCCTCTGTTTAGAGGAGCATTTTACTTTTCAAAACT-
* * *
7860145 ATGGTGCCTCTGTTTATAAGAACAATTTATTTTTCAAAGTTGTGGTGCCTATATTTAGAG
64 ATGGTGCCTCTGTTTAGAAGAGCAATTTATTTTTCAAAGTTGTGGTGCCTATGTTTAGAG
* * *
7860205 GAGCAATCTACTTTTCAAAGTTATGATGCCTCTGTTTAGAGGAGCATTTTACTTTTCAAAACTAC
1 GAGCAATTTACTTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGCATTTTACTTTTCAAAACTAT
* * *
7860270 GGTGCCTCTGTTTAGAAGAGCAATTTATTTTTCAAAGTTTTGGTGCCTTTGTTTAGAT
66 GGTGCCTCTGTTTAGAAGAGCAATTTATTTTTCAAAGTTGTGGTGCCTATGTTTAGAG
* * *
7860328 GAGCATTTTACTTTTCAAAGTTGTAATGCCTCTGTTTAGAGAAGCATT
1 GAGCAATTTACTTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGCATT
7860376 CATTTTTCTC
Statistics
Matches: 254, Mismatches: 33, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
121 3 0.01
122 94 0.37
123 115 0.45
124 38 0.15
125 4 0.02
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.41
Consensus pattern (123 bp):
GAGCAATTTACTTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGCATTTTACTTTTCAAAACTAT
GGTGCCTCTGTTTAGAAGAGCAATTTATTTTTCAAAGTTGTGGTGCCTATGTTTAGAG
Found at i:7870198 original size:15 final size:15
Alignment explanation
Indices: 7870180--7870235 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
7870170 TTTATCTAAT
*
7870180 AAAAATTAAAAGCAA
1 AAAAATCAAAAGCAA
**
7870195 AAAAATCAAAAATAA
1 AAAAATCAAAAGCAA
* *
7870210 AAAAA--GAAACCAA
1 AAAAATCAAAAGCAA
7870223 AAAAATCAAAAGC
1 AAAAATCAAAAGC
7870236 TTTAAAAAAT
Statistics
Matches: 31, Mismatches: 8, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
13 10 0.32
15 21 0.68
ACGTcount: A:0.75, C:0.11, G:0.05, T:0.09
Consensus pattern (15 bp):
AAAAATCAAAAGCAA
Found at i:7870427 original size:2 final size:2
Alignment explanation
Indices: 7870420--7870451 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7870410 AACTAATCGA
7870420 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7870452 TATTGTCCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7870507 original size:14 final size:14
Alignment explanation
Indices: 7870490--7870519 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7870480 TTTATCTAAT
*
7870490 AAAAAATTAAATTA
1 AAAAAATCAAATTA
7870504 AAAAAATCAAATTA
1 AAAAAATCAAATTA
7870518 AA
1 AA
7870520 TATTAGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAAAATCAAATTA
Found at i:7873937 original size:73 final size:73
Alignment explanation
Indices: 7873825--7873960 Score: 202
Period size: 73 Copynumber: 1.9 Consensus size: 73
7873815 ATTCAAACCC
* *
7873825 TTGTGCACTCTTTCAACATAACCAAACACATACTCATATGTTCCCATAAACATACACACCCATCA
1 TTGTGCACCCTTTCAACATAACCAAACACATACTCATATGCTCCCATAAACATACACACCCATCA
7873890 AACGTCCA
66 AACGTCCA
** * *
7873898 TTGTGCACCCTTTCAACATAATTAAACACATA-TCTATATGCTCCCATAAATATACACATCCAT
1 TTGTGCACCCTTTCAACATAACCAAACACATACTC-ATATGCTCCCATAAACATACACACCCAT
7873961 AAGATGTAGA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
72 2 0.04
73 54 0.96
ACGTcount: A:0.37, C:0.30, G:0.05, T:0.28
Consensus pattern (73 bp):
TTGTGCACCCTTTCAACATAACCAAACACATACTCATATGCTCCCATAAACATACACACCCATCA
AACGTCCA
Found at i:7874214 original size:52 final size:52
Alignment explanation
Indices: 7874087--7874217 Score: 169
Period size: 52 Copynumber: 2.5 Consensus size: 52
7874077 ACTTACCCCC
* *
7874087 ATTAAGAATCCATC-TCCTTTTAGAATTCTTCTCTTGTAAGTCAAACTTGCCT
1 ATTAAGAAT-CATCTTTCTTTTAGAATTCTTCTCTTGTAAGTCAAACTTACCT
* *
7874139 ATTAAGAATC-CCTTTATTTTTAGAATTCTTCTCTTGCT-AGTCAAACTTACCT
1 ATTAAGAATCATCTTT-CTTTTAGAATTCTTCTCTTG-TAAGTCAAACTTACCT
*
7874191 ATTAAGAATCATCTTTCTCTTAGAATT
1 ATTAAGAATCATCTTTCTTTTAGAATT
7874218 TTTTTTTGCA
Statistics
Matches: 68, Mismatches: 7, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
50 1 0.01
51 2 0.03
52 60 0.88
53 5 0.07
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.43
Consensus pattern (52 bp):
ATTAAGAATCATCTTTCTTTTAGAATTCTTCTCTTGTAAGTCAAACTTACCT
Found at i:7874280 original size:11 final size:11
Alignment explanation
Indices: 7874258--7874296 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
7874248 AAAATCTGAC
*
7874258 AAATCCCAAAT
1 AAATCTCAAAT
*
7874269 AAATCTCTAAT
1 AAATCTCAAAT
*
7874280 AAATCCCAAAT
1 AAATCTCAAAT
7874291 AAATCT
1 AAATCT
7874297 TTTATGTGAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (11 bp):
AAATCTCAAAT
Found at i:7879891 original size:18 final size:20
Alignment explanation
Indices: 7879870--7879907 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7879860 TAAGTATCAT
7879870 TAGAT-TTA-TAAAAATATA
1 TAGATATTATTAAAAATATA
*
7879888 TAGATATTATTAATAATATA
1 TAGATATTATTAAAAATATA
7879908 AAAATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 3 0.18
20 9 0.53
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (20 bp):
TAGATATTATTAAAAATATA
Found at i:7879899 original size:28 final size:26
Alignment explanation
Indices: 7879856--7879913 Score: 64
Period size: 28 Copynumber: 2.2 Consensus size: 26
7879846 AAAAAAATGT
*
7879856 AATATAAGTATCATTAGAT-TTATAAA
1 AATATAAGTATCATTA-ATAATATAAA
*
7879882 AATATATAGATATTATTAATAATATAAA
1 AATATA-AG-TATCATTAATAATATAAA
7879910 AATA
1 AATA
7879914 AAAAATATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 6 0.22
27 4 0.15
28 17 0.63
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (26 bp):
AATATAAGTATCATTAATAATATAAA
Found at i:7881635 original size:25 final size:25
Alignment explanation
Indices: 7881585--7881637 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
7881575 TATATTTCTA
* *
7881585 AAAATATTTTTATATTATATGCACT
1 AAAATATTTTTATATTAGAAGCACT
7881610 AAAATATTTTTATATTAGACAG-ACT
1 AAAATATTTTTATATTAGA-AGCACT
7881635 AAA
1 AAA
7881638 TTTAATAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.42
Consensus pattern (25 bp):
AAAATATTTTTATATTAGAAGCACT
Found at i:7886382 original size:12 final size:12
Alignment explanation
Indices: 7886365--7886389 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7886355 AAAATACATT
7886365 AAATATAAACTC
1 AAATATAAACTC
7886377 AAATATAAACTC
1 AAATATAAACTC
7886389 A
1 A
7886390 TTATAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.00, T:0.24
Consensus pattern (12 bp):
AAATATAAACTC
Found at i:7890266 original size:113 final size:113
Alignment explanation
Indices: 7890016--7890246 Score: 347
Period size: 113 Copynumber: 2.0 Consensus size: 113
7890006 TCACTAATTT
* * * * ** * *
7890016 TTCCTAAATTGAAACCCAGGTTT-CTTCTTCTTCTTTGCGCTTGATTTCCTTTCCTTTCCCAGGT
1 TTCCTAAAATGAAACTCAAGTTTCCTT-TTCTTTTTTGTACTCGATTTCCTTTCCTTTCCCAGGC
*
7890080 TTCTTTCTTCTCTGCAAACCTAGGCCATTTGTTTCATTCTTGCTTTTGA
65 TTCTTTCTTCTCTGCAAACCTAGGCCATTTGTTTCATTCTTGCTTTCGA
7890129 TTCCTAAAATGAAACTCAAGTTTCCTTTTCTTTTTTGTACTCGATTTCCTTTCCTTTCCCAGGCT
1 TTCCTAAAATGAAACTCAAGTTTCCTTTTCTTTTTTGTACTCGATTTCCTTTCCTTTCCCAGGCT
* *
7890194 TCTTTCTTCTCTGCAAACCTAGGTCATTTGTTTCATTTTTGCTTTCGA
66 TCTTTCTTCTCTGCAAACCTAGGCCATTTGTTTCATTCTTGCTTTCGA
7890242 TTCCT
1 TTCCT
7890247 TTCCTTTTCA
Statistics
Matches: 106, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
113 103 0.97
114 3 0.03
ACGTcount: A:0.15, C:0.26, G:0.11, T:0.48
Consensus pattern (113 bp):
TTCCTAAAATGAAACTCAAGTTTCCTTTTCTTTTTTGTACTCGATTTCCTTTCCTTTCCCAGGCT
TCTTTCTTCTCTGCAAACCTAGGCCATTTGTTTCATTCTTGCTTTCGA
Found at i:7890870 original size:20 final size:19
Alignment explanation
Indices: 7890837--7890879 Score: 68
Period size: 20 Copynumber: 2.2 Consensus size: 19
7890827 ATTTTCACAG
7890837 TAAATATGCCCAAATGTAA
1 TAAATATGCCCAAATGTAA
*
7890856 TAAATTATGCTCAAATGTAA
1 TAAA-TATGCCCAAATGTAA
7890876 TAAA
1 TAAA
7890880 GGAGTTGAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.30
Consensus pattern (19 bp):
TAAATATGCCCAAATGTAA
Found at i:7892857 original size:19 final size:18
Alignment explanation
Indices: 7892816--7892859 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
7892806 AACAAAAACC
*
7892816 AAAACAAAATAAAATCTG
1 AAAACAGAATAAAATCTG
*
7892834 AAAACAGAATAACATTCTG
1 AAAACAGAATAA-AATCTG
*
7892853 GAAACAG
1 AAAACAG
7892860 CTTTTAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.59, C:0.14, G:0.11, T:0.16
Consensus pattern (18 bp):
AAAACAGAATAAAATCTG
Found at i:7894684 original size:2 final size:2
Alignment explanation
Indices: 7894679--7894711 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
7894669 ACACAAAATT
7894679 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
7894712 GGAAACCAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:7897930 original size:15 final size:15
Alignment explanation
Indices: 7897910--7897939 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7897900 CATTCTTTTC
7897910 GGATGCAAATTGGAG
1 GGATGCAAATTGGAG
7897925 GGATGCAAATTGGAG
1 GGATGCAAATTGGAG
7897940 ATCAAATCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.40, T:0.20
Consensus pattern (15 bp):
GGATGCAAATTGGAG
Found at i:7899239 original size:15 final size:16
Alignment explanation
Indices: 7899219--7899256 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
7899209 TGTTAGTCGA
7899219 TTATTTAATGAT-TTT
1 TTATTTAATGATATTT
*
7899234 TTATTTAATTATATTT
1 TTATTTAATGATATTT
*
7899250 TAATTTA
1 TTATTTA
7899257 TTAAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (16 bp):
TTATTTAATGATATTT
Found at i:7900407 original size:20 final size:20
Alignment explanation
Indices: 7900382--7900444 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
7900372 TCAATTAATA
*
7900382 AATTATTGATGGACATTATT
1 AATTATTGATGGATATTATT
**
7900402 AATTA-T-ATGTTTA-TATT
1 AATTATTGATGGATATTATT
*
7900419 AATTATTGATGGGTATTATT
1 AATTATTGATGGATATTATT
7900439 AATTAT
1 AATTAT
7900445 ATGTTTATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 9 0.26
18 5 0.14
19 6 0.17
20 15 0.43
ACGTcount: A:0.35, C:0.02, G:0.13, T:0.51
Consensus pattern (20 bp):
AATTATTGATGGATATTATT
Found at i:7900429 original size:37 final size:37
Alignment explanation
Indices: 7900382--7900452 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
7900372 TCAATTAATA
7900382 AATTATTGATGGACATTATTAATTATATGTTTATATT
1 AATTATTGATGGACATTATTAATTATATGTTTATATT
**
7900419 AATTATTGATGGGTATTATTAATTATATGTTTAT
1 AATTATTGATGGACATTATTAATTATATGTTTAT
7900453 GTTATTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.52
Consensus pattern (37 bp):
AATTATTGATGGACATTATTAATTATATGTTTATATT
Found at i:7900458 original size:20 final size:18
Alignment explanation
Indices: 7900396--7900452 Score: 71
Period size: 17 Copynumber: 3.1 Consensus size: 18
7900386 ATTGATGGAC
7900396 ATTATTAATTATATGTTT
1 ATTATTAATTATATGTTT
**
7900414 A-TATTAATTATTGATGGGT
1 ATTATTAATTA-T-ATGTTT
7900433 ATTATTAATTATATGTTT
1 ATTATTAATTATATGTTT
7900451 AT
1 AT
7900453 GTTATTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
17 9 0.28
18 8 0.25
19 6 0.19
20 9 0.28
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (18 bp):
ATTATTAATTATATGTTT
Found at i:7900528 original size:20 final size:20
Alignment explanation
Indices: 7900492--7900529 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7900482 AAATCTTTTA
*
7900492 AATTATGAAAGTAGAATTAG
1 AATTATGAAACTAGAATTAG
7900512 AATTATGATAACT-GAATT
1 AATTATGA-AACTAGAATT
7900530 CTATGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.47, C:0.03, G:0.16, T:0.34
Consensus pattern (20 bp):
AATTATGAAACTAGAATTAG
Found at i:7906125 original size:12 final size:12
Alignment explanation
Indices: 7906108--7906134 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7906098 TCTAAGCTTA
7906108 CCTCTTCCCATG
1 CCTCTTCCCATG
7906120 CCTCTTCCCATG
1 CCTCTTCCCATG
7906132 CCT
1 CCT
7906135 GATACCACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.52, G:0.07, T:0.33
Consensus pattern (12 bp):
CCTCTTCCCATG
Found at i:7908407 original size:12 final size:13
Alignment explanation
Indices: 7908377--7908409 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
7908367 GAAGCTAGAG
*
7908377 AAAGTAAAGAAAT
1 AAAGTATAGAAAT
7908390 AAAGTATAGAAA-
1 AAAGTATAGAAAT
7908402 AAAGTATA
1 AAAGTATA
7908410 AATACCCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 8 0.42
13 11 0.58
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (13 bp):
AAAGTATAGAAAT
Found at i:7913606 original size:18 final size:17
Alignment explanation
Indices: 7913583--7913663 Score: 56
Period size: 18 Copynumber: 4.3 Consensus size: 17
7913573 AACAAAGGAG
7913583 AAAAAAATAAAAAAAAGA
1 AAAAAAATAAAAAAAA-A
7913601 AAAAAAA-AGCAAAAAGTAAA
1 AAAAAAATA--AAAAA--AAA
7913621 AAAGAAGAATAAAAAAAACA
1 AAA-AA-AATAAAAAAAA-A
* *
7913641 CAACAAATAAAAAAATAA
1 AAAAAAATAAAAAAA-AA
7913659 AAAAA
1 AAAAA
7913664 TGAAGAGAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 18
0.69 0.06 0.25
Matches are distributed among these distances:
17 1 0.02
18 21 0.42
19 9 0.18
20 7 0.14
21 9 0.18
22 2 0.04
23 1 0.02
ACGTcount: A:0.83, C:0.05, G:0.06, T:0.06
Consensus pattern (17 bp):
AAAAAAATAAAAAAAAA
Found at i:7913621 original size:15 final size:13
Alignment explanation
Indices: 7913585--7913662 Score: 56
Period size: 12 Copynumber: 5.9 Consensus size: 13
7913575 CAAAGGAGAA
7913585 AAAAATAAAAAA-
1 AAAAATAAAAAAG
7913597 AAGAAA-AAAAAAG
1 AA-AAATAAAAAAG
7913610 CAAAAAGTAAAAAAG
1 -AAAAA-TAAAAAAG
*
7913625 AAGAATAAAAAA-
1 AAAAATAAAAAAG
* *
7913637 AACACAACAAATAA-
1 AA-A-AATAAAAAAG
7913651 AAAAATAAAAAA
1 AAAAATAAAAAA
7913663 ATGAAGAGAA
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
12 17 0.32
13 14 0.26
14 15 0.28
15 7 0.13
ACGTcount: A:0.82, C:0.05, G:0.06, T:0.06
Consensus pattern (13 bp):
AAAAATAAAAAAG
Found at i:7914829 original size:118 final size:120
Alignment explanation
Indices: 7914415--7914827 Score: 396
Period size: 119 Copynumber: 3.5 Consensus size: 120
7914405 ACTCATTTCA
* * * * * *
7914415 ATCTTGGCTCAAG-ATATATCATTTCTTATGATTCATGATTTTGTCCTGGTCATTTATCTT-TGA
1 ATCTTGGCTC-AGTCTAGATCATTTCTTATGATTTATGATTTTATCCCGATCATTTATCTTCTGA
* * *
7914478 CCTCGACTCGATCTTGGTCACTTCATTTTAACTCGTGGTTTTGTCCTGGTTACTTG
65 CCTTGACTCGATCTTGGTCACTTCATTTTGACTCGTGGTTTTGTCCTGGTCACTTG
* * * *
7914534 A-CTTTGGCTCAGTCCAGATCATTTCATATGATTTATGATTTTGTCCTGATCATTTATCTTC-GA
1 ATC-TTGGCTCAGTCTAGATCATTTCTTATGATTTATGATTTTATCCCGATCATTTATCTTCTGA
* * * * ** *
7914597 CCGTGACT-TAGTTTTGGTCGCTTCATTTTGACTTAT-GTTTTCGTCTTGGTCACTTG
65 CCTTGACTCGA-TCTTGGTCACTTCATTTTGACTCGTGGTTTT-GTCCTGGTCACTTG
* * * * *
7914653 ATCTTGGCTCAATCTAGATCATTT-TATACGATTTGTGGTTTTATCCC-AGTCGTTTAT-TTCTG
1 ATCTTGGCTCAGTCTAGATCATTTCT-TATGATTTATGATTTTATCCCGA-TCATTTATCTTCTG
* *** * *
7914715 -CCTTGACTCGATCTTGGTCATTTCATTTTGACTCGTGGTTTTGTCCCAATCACCTA
64 ACCTTGACTCGATCTTGGTCACTTCATTTTGACTCGTGGTTTTGTCCTGGTCACTTG
* * *
7914771 ATCTTGGCTTAGTCTAGATCATTTCTTATGACTTGTGATTTTATCCCGATCATTTAT
1 ATCTTGGCTCAGTCTAGATCATTTCTTATGATTTATGATTTTATCCCGATCATTTAT
7914828 TTTTTACCTA
Statistics
Matches: 237, Mismatches: 44, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
118 95 0.40
119 141 0.59
120 1 0.00
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (120 bp):
ATCTTGGCTCAGTCTAGATCATTTCTTATGATTTATGATTTTATCCCGATCATTTATCTTCTGAC
CTTGACTCGATCTTGGTCACTTCATTTTGACTCGTGGTTTTGTCCTGGTCACTTG
Found at i:7914931 original size:237 final size:237
Alignment explanation
Indices: 7914415--7914941 Score: 539
Period size: 237 Copynumber: 2.2 Consensus size: 237
7914405 ACTCATTTCA
** * * * **
7914415 ATCTTGGCTCAAGATATATCATTTCTTATGATTCATGATTTTGTCCTGGTCATTTATCTTTGACC
1 ATCTTGGCTCAATCTAGATCA-TTCTTATGATTCATGGTTTTATCCCAGTCATTTATCTTTGACC
*** * * *
7914480 TCGACTCGATCTTGGTCACTTCATTTTAACTCGTGGTTTTGTCCTGGTTACTTGACTTTGGCTCA
65 TCGACTCGATCTTGGTCACTTCATTTTAACTCGTGGTTTTGTCCCAATCACCTAACTTTGGCTCA
* * *
7914545 GTCCAGATCATTTCATATGATTTATGATTTTGTCCTGATCATTTATCTTCGACCGTGACTTAGTT
130 GTCCAGATCATTTCATATGACTTATGATTTTATCCCGATCATTTATCTTCGACCGTGACTTAGTT
* ** * * *
7914610 TTGGTCGCTTCATTTTGACTTATGTTTTCGTCTTGGTCACTTG
195 TTGGTCACTTCATTTTGACTTAAATTTTCGTCTCGATCACTCG
** *
7914653 ATCTTGGCTCAATCTAGATCATT-TTATACGATTTGTGGTTTTATCCCAGTCGTTTAT-TTCTG-
1 ATCTTGGCTCAATCTAGATCATTCTTAT--GATTCATGGTTTTATCCCAGTCATTTATCTT-TGA
* * *
7914715 CCTTGACTCGATCTTGGTCATTTCATTTTGACTCGTGGTTTTGTCCCAATCACCTAA-TCTTGGC
63 CCTCGACTCGATCTTGGTCACTTCATTTTAACTCGTGGTTTTGTCCCAATCACCTAACT-TTGGC
* * * * * **
7914779 TTAGTCTAGATCATTTCTTATGACTTGTGATTTTATCCCGATCATTTATTTTTTACC-TAGACTT
127 TCAGTCCAGATCATTTCATATGACTTATGATTTTATCCCGATCATTTATCTTCGACCGT-GACTT
* * *
7914843 AGTTTTTGTCACTTCTTTTTTA-TTCACAATTTT-GTCTCGATCACTCG
191 AGTTTTGGTCACTTCATTTTGACTT-A-AATTTTCGTCTCGATCACTCG
* * *
7914890 ATCTTGGTTCAGT-TCAGATCATTCCTTATGACTCATGGTTTTATCCCAGTCA
1 ATCTTGGCTCAATCT-AGATCATT-CTTATGATTCATGGTTTTATCCCAGTCA
7914942 CCCGATCTTA
Statistics
Matches: 235, Mismatches: 44, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
236 9 0.04
237 177 0.75
238 45 0.19
239 4 0.02
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.46
Consensus pattern (237 bp):
ATCTTGGCTCAATCTAGATCATTCTTATGATTCATGGTTTTATCCCAGTCATTTATCTTTGACCT
CGACTCGATCTTGGTCACTTCATTTTAACTCGTGGTTTTGTCCCAATCACCTAACTTTGGCTCAG
TCCAGATCATTTCATATGACTTATGATTTTATCCCGATCATTTATCTTCGACCGTGACTTAGTTT
TGGTCACTTCATTTTGACTTAAATTTTCGTCTCGATCACTCG
Found at i:7915467 original size:56 final size:56
Alignment explanation
Indices: 7915355--7915467 Score: 136
Period size: 56 Copynumber: 2.0 Consensus size: 56
7915345 TTTATCCTGA
* * ** *
7915355 TCACCCGATCTTAGCTCAGTCCAGATCATTCCTTATGACTCGTGGTTTTGTTTCGG
1 TCACCCGATCTTAGCTCAGTCCAGATCATTCCTTATGACTCATGATTTCATCTCGG
* * * * *
7915411 TCACCTGATCTTGGCTCCGTCTAGATCATTCTTTATGACTCATGATTTCATCTCGG
1 TCACCCGATCTTAGCTCAGTCCAGATCATTCCTTATGACTCATGATTTCATCTCGG
7915467 T
1 T
7915468 TATTCATCTT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.17, C:0.27, G:0.18, T:0.39
Consensus pattern (56 bp):
TCACCCGATCTTAGCTCAGTCCAGATCATTCCTTATGACTCATGATTTCATCTCGG
Found at i:7915568 original size:472 final size:474
Alignment explanation
Indices: 7914737--7915593 Score: 1035
Period size: 472 Copynumber: 1.8 Consensus size: 474
7914727 CTTGGTCATT
* *
7914737 TCATTTTGACTCGTGGTTTTGTCCCAATCACCTAATCTTGGCTTAGTCTAGATCATTTCTTATGA
1 TCATTTTGACTCATGGTTTTATCCCAATCACCTAATCTTGGCTTAGTCTAGATCATTTCTTATGA
* * * * ** * * * *
7914802 CTTGTGATTTTATCCCGATCATTTATTTTTTACCTAGACTTAGTTTTTGTCACTTCTTTTTTATT
66 CTCGTGATCTCATCCCGATCATTTATTTTTTACCTAGACTTAATCCTGGTCACTTCCTTCTGATT
* * * * *
7914867 CACAATTTTGTCTCGATCACTCGATCTTGGTTCAGTTCAGATCATTCCTTATGACTCATGGTTTT
131 CACAATTTTATCTCGATCACCCGATCTTAGCTCAGTCCAGATCATTCCTTATGACTCATGGTTTT
* *
7914932 ATCCCAGTCACCCGATCTTACCTCTATCCAAATCAGTTGTTATGACTCATGATTTCATCTTGGTC
196 ATCCCAGTCACCCGATCTTACCTCCATCCAAATCAGTTGTTATGACTCATGATTTCATCTCGGTC
** * * * ** **
7914997 ATTCATCTTCGACCTTGATTCGGTCTTGGTCACTTTTTGACTCATGGTTTTGTCCTGGTCATTTA
261 ATTCATCTTCGACCTTGATTCGACCTTGGTCACTTCTTAACTCATGATTTCATCCCAGTCATTTA
* * * * *
7915062 TTTTAGACCTTGACTCGGTCTTAATCATTTCA-TTTTAACTTGTGATTTTATCCTAATCACTTAA
326 TTTTAGACCTTGACTCGATCCTAATCACTTCATTTTTAACTCGTGATTTTATCCCAATCACTTAA
7915126 TCTTGGCTTAGTCCAGATCATTTCATGTGATTCCTGATTTCATTCTGATCATTTAATTTTGACCT
391 TCTTGGCTTAGTCCAGATCATTTCATGTGATTCCTGATTTCATTCTGATCATTTAATTTTGACCT
7915191 CGACTTAATCTTGATCGTG
456 CGACTTAATCTTGATCGTG
* * * *
7915210 TCATTTTGACTCATGGTTTTATCCCGATCACCTGATCTTGG-TTCAGTTTAGATCATTTTTTATG
1 TCATTTTGACTCATGGTTTTATCCCAATCACCTAATCTTGGCTT-AGTCTAGATCATTTCTTATG
* *
7915274 ACTCGTGATCTCATCCC-AGTTA-TTATTTTTTACCTCGACTTAATCCTGGTCACTTCCTTCTGA
65 ACTCGTGATCTCATCCCGA-TCATTTATTTTTTACCTAGACTTAATCCTGGTCACTTCCTTCTGA
** * *
7915337 TTCGTAGTTTTATC-CTGATCACCCGATCTTAGCTCAGTCCAGATCATTCCTTATGACTCGTGGT
129 TTCACAATTTTATCTC-GATCACCCGATCTTAGCTCAGTCCAGATCATTCCTTATGACTCATGGT
* ** * * ** * * * *
7915401 TTTGTTTCGGTCACCTGATCTTGGCTCCGTCTAGATCA-TTCTTTATGACTCATGATTTCATCTC
193 TTTATCCCAGTCACCCGATCTTACCTCCATCCAAATCAGTT-GTTATGACTCATGATTTCATCTC
* * *
7915465 GGTTATTCATCTTCGATCTTGACTT-GACCTTGGTCACTTCTTAACTCGTGATTTCATCCCAGTC
257 GGTCATTCATCTTCGACCTTGA-TTCGACCTTGGTCACTTCTTAACTCATGATTTCATCCCAGTC
* ** * * * * *
7915529 GTTTATTTTTTACCTTGACTTGATCCTGATTACTTCATTTTTGACTCGTGATTTTGTCCCAATCA
321 ATTTATTTTAGACCTTGACTCGATCCTAATCACTTCATTTTTAACTCGTGATTTTATCCCAATCA
7915594 TCTGATCTTG
Statistics
Matches: 313, Mismatches: 65, Indels: 12
0.80 0.17 0.03
Matches are distributed among these distances:
471 3 0.01
472 214 0.68
473 96 0.31
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.44
Consensus pattern (474 bp):
TCATTTTGACTCATGGTTTTATCCCAATCACCTAATCTTGGCTTAGTCTAGATCATTTCTTATGA
CTCGTGATCTCATCCCGATCATTTATTTTTTACCTAGACTTAATCCTGGTCACTTCCTTCTGATT
CACAATTTTATCTCGATCACCCGATCTTAGCTCAGTCCAGATCATTCCTTATGACTCATGGTTTT
ATCCCAGTCACCCGATCTTACCTCCATCCAAATCAGTTGTTATGACTCATGATTTCATCTCGGTC
ATTCATCTTCGACCTTGATTCGACCTTGGTCACTTCTTAACTCATGATTTCATCCCAGTCATTTA
TTTTAGACCTTGACTCGATCCTAATCACTTCATTTTTAACTCGTGATTTTATCCCAATCACTTAA
TCTTGGCTTAGTCCAGATCATTTCATGTGATTCCTGATTTCATTCTGATCATTTAATTTTGACCT
CGACTTAATCTTGATCGTG
Found at i:7915669 original size:120 final size:120
Alignment explanation
Indices: 7915508--7915954 Score: 338
Period size: 120 Copynumber: 3.7 Consensus size: 120
7915498 TCACTTCTTA
* * * * * *
7915508 ACTCGTGATTTCATC-CCAGTCGTTTATTTTTTACCTTGACTTGATCCT-GATTACTTCATTTTT
1 ACTCGTGGTTTCATCTCGA-TCATTTATTTTTAACCTCGACTTGATCCTAG-TCACTTCATTTTT
** * * * *
7915571 GACTCGTGATTTTGTCCCAATCA-TCTGATCTTGATTCAGTCGAAATCATTTTTTATG
64 GACTCGTGATTTCATCACAATCACT-TGATCTTGACTCAGTCCAAATCATTTCTTATG
* * * *
7915628 ACTCGTGGTTTCATCTTGGTCATTTATTTTCAACCTCGACTTGGTCCTAGTCACTTCATTTTTGA
1 ACTCGTGGTTTCATCTCGATCATTTATTTTTAACCTCGACTTGATCCTAGTCACTTCATTTTTGA
* * * *
7915693 CTCGTGGTTTCATCATAGTCACTTGATCTTGGCTCAGTCCAAATCATTTCTTATG
66 CTCGTGATTTCATCACAATCACTTGATCTTGACTCAGTCCAAATCATTTCTTATG
* * * * * * * * *
7915748 ACTCGTGGTTTTATCTCGATCATTTATTTTTGACCTCGACTCGGTCTTGGTCATTTTATTTTTTA
1 ACTCGTGGTTTCATCTCGATCATTTATTTTTAACCTCGACTTGATCCTAGTCACTTCATTTTTGA
** *** * *
7915813 CTTATGATTTCATTC-TGGTCA-TTCAATCTTGGCTCAGTCCAAATCATTT-TTATG
66 CTCGTGATTTCA-TCACAATCACTT-GATCTTGACTCAGTCCAAATCATTTCTTATG
* * * * * * * *
7915867 ACTCGTGATTTTATC-CTAATCTTTTATTTTTAACCTTGACTCTG-TCTTGGTCGCTTCATTGTT
1 ACTCGTGGTTTCATCTC-GATCATTTATTTTTAACCTCGACT-TGATCCTAGTCACTTCATT-TT
* *
7915930 T-ACT-GTGATTTCATCTCGATCACTT
63 TGACTCGTGATTTCATCACAATCACTT
7915955 ACGCTCGTTG
Statistics
Matches: 269, Mismatches: 48, Indels: 21
0.80 0.14 0.06
Matches are distributed among these distances:
117 2 0.01
118 13 0.05
119 59 0.22
120 191 0.71
121 4 0.01
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (120 bp):
ACTCGTGGTTTCATCTCGATCATTTATTTTTAACCTCGACTTGATCCTAGTCACTTCATTTTTGA
CTCGTGATTTCATCACAATCACTTGATCTTGACTCAGTCCAAATCATTTCTTATG
Found at i:7915932 original size:119 final size:119
Alignment explanation
Indices: 7915606--7915943 Score: 353
Period size: 120 Copynumber: 2.8 Consensus size: 119
7915596 TGATCTTGAT
* * * * *** * *
7915606 TCAGTCGAAATCATTTTTTATGACTCGTGGTTTCATCTTGGTCATTTATTTTCAACCTCGACTTG
1 TCAGTCCAAATCATTTCTTATGACTCGTGATTTTATCTCAATCATTTATTTTTAACCTCGACTCG
* * * * * *
7915671 GTCCTAGTCACTTCATT-TTTGACTCGTGGTTTCA-TCATAGTCACTT-GATCTTGGC
66 GTCTTGGTCACTTCATTGTTT-ACT-ATGATTTCATTC-TGGTCA-TTCAATCTTGGC
* * *
7915726 TCAGTCCAAATCATTTCTTATGACTCGTGGTTTTATCTCGATCATTTATTTTTGACCTCGACTCG
1 TCAGTCCAAATCATTTCTTATGACTCGTGATTTTATCTCAATCATTTATTTTTAACCTCGACTCG
* * *
7915791 GTCTTGGTCATTTTATTTTTTACTTATGATTTCATTCTGGTCATTCAATCTTGGC
66 GTCTTGGTCACTTCATTGTTTAC-TATGATTTCATTCTGGTCATTCAATCTTGGC
* *
7915846 TCAGTCCAAATCATTT-TTATGACTCGTGATTTTATC-CTAATCTTTTATTTTTAACCTTGACTC
1 TCAGTCCAAATCATTTCTTATGACTCGTGATTTTATCTC-AATCATTTATTTTTAACCTCGACTC
* * *
7915909 TGTCTTGGTCGCTTCATTGTTTACTGTGATTTCAT
65 GGTCTTGGTCACTTCATTGTTTACTATGATTTCAT
7915944 CTCGATCACT
Statistics
Matches: 186, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
118 11 0.06
119 61 0.33
120 108 0.58
121 6 0.03
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.46
Consensus pattern (119 bp):
TCAGTCCAAATCATTTCTTATGACTCGTGATTTTATCTCAATCATTTATTTTTAACCTCGACTCG
GTCTTGGTCACTTCATTGTTTACTATGATTTCATTCTGGTCATTCAATCTTGGC
Found at i:7916147 original size:3 final size:3
Alignment explanation
Indices: 7916141--7916180 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
7916131 TATTGTATAG
7916141 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
7916181 TATCGTCACT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:7916647 original size:20 final size:20
Alignment explanation
Indices: 7916606--7916647 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7916596 GGTTTGAAGA
* * *
7916606 TTCTGGGCTTAGATTTAGGT
1 TTCTGGGATTAGATCTAAGT
7916626 TTCTGGGATTAGATCTAAGT
1 TTCTGGGATTAGATCTAAGT
7916646 TT
1 TT
7916648 ATAGGGGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.19, C:0.10, G:0.26, T:0.45
Consensus pattern (20 bp):
TTCTGGGATTAGATCTAAGT
Found at i:7917158 original size:6 final size:6
Alignment explanation
Indices: 7917149--7917197 Score: 63
Period size: 5 Copynumber: 9.0 Consensus size: 6
7917139 AGTTTTTCTT
7917149 TTTTAA TTTTAA TTTTAA TTTTAA -TTTAA -TTTAA -TTT-A TTTT-A
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA
7917192 TTTTAA
1 TTTTAA
7917198 ACTCATTTTA
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
4 1 0.02
5 21 0.51
6 19 0.46
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
TTTTAA
Found at i:7918028 original size:2 final size:2
Alignment explanation
Indices: 7918023--7918047 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7918013 TCTCTCTCTC
7918023 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
7918048 CTTCGCTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7923333 original size:31 final size:32
Alignment explanation
Indices: 7923298--7923357 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
7923288 ATTTTTAATT
*
7923298 ATATATAATA-TATTATATAAATAATAAATAC
1 ATATATAATATTATAATATAAATAATAAATAC
* *
7923329 ATATATAATATTATAATGTAAATATTAAA
1 ATATATAATATTATAATATAAATAATAAA
7923358 AAATATGTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 10 0.40
32 15 0.60
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (32 bp):
ATATATAATATTATAATATAAATAATAAATAC
Found at i:7924150 original size:18 final size:18
Alignment explanation
Indices: 7924127--7924161 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7924117 AAATTTATCT
* *
7924127 AATAAAACAATTTTGAAA
1 AATAAAAAAAATTTGAAA
7924145 AATAAAAAAAATTTGAA
1 AATAAAAAAAATTTGAA
7924162 TGAGGTGCCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.26
Consensus pattern (18 bp):
AATAAAAAAAATTTGAAA
Found at i:7924794 original size:22 final size:22
Alignment explanation
Indices: 7924731--7924794 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
7924721 ATTTAATAAA
* *
7924731 AAATAAAATTAAAAAAATATAT
1 AAATTAAATTAAAAAAAAATAT
* * *
7924753 AAAATAGATTAAATATAAAAT-T
1 AAATTAAATTAAA-AAAAAATAT
7924775 AAATTAAATTAAAAACAAAA
1 AAATTAAATTAAAAA-AAAA
7924795 AAATTTAAAA
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
21 1 0.03
22 26 0.81
23 5 0.16
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.27
Consensus pattern (22 bp):
AAATTAAATTAAAAAAAAATAT
Found at i:7927212 original size:2 final size:2
Alignment explanation
Indices: 7927207--7927240 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
7927197 ATATATATAT
* *
7927207 AG AG AG AG AG AG AG AG AG GG AG AG AG AG AT AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
7927241 TATTTGCATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.50, T:0.03
Consensus pattern (2 bp):
AG
Found at i:7930183 original size:21 final size:20
Alignment explanation
Indices: 7930146--7930219 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 20
7930136 GTATAATTGC
7930146 ATGATA-ATTAATATTATTAT
1 ATGATATATT-ATATTATTAT
**
7930166 ATGATAGT-TTATTATTATTGC
1 ATGATA-TATTA-TATTATTAT
7930187 ATGATATATTATATTATTAT
1 ATGATATATTATATTATTAT
7930207 -TGTATTATATTAT
1 ATG-A-TATATTAT
7930220 TTGCATAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
19 2 0.05
20 16 0.36
21 26 0.59
ACGTcount: A:0.36, C:0.01, G:0.08, T:0.54
Consensus pattern (20 bp):
ATGATATATTATATTATTAT
Found at i:7930205 original size:23 final size:22
Alignment explanation
Indices: 7930141--7930208 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 22
7930131 ATTTTGTATA
7930141 ATTGCATGATAATTAATATTATT
1 ATTGCATGATAATT-ATATTATT
*
7930164 A-T--ATGATAGTT-TATTATT
1 ATTGCATGATAATTATATTATT
7930182 ATTGCATGATATATTATATTATT
1 ATTGCATGATA-ATTATATTATT
7930205 ATTG
1 ATTG
7930209 TATTATATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
18 8 0.21
19 1 0.03
20 8 0.21
21 6 0.16
22 3 0.08
23 12 0.32
ACGTcount: A:0.35, C:0.03, G:0.10, T:0.51
Consensus pattern (22 bp):
ATTGCATGATAATTATATTATT
Found at i:7936134 original size:20 final size:19
Alignment explanation
Indices: 7936109--7936150 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
7936099 TGTGAGTTTG
7936109 ATTTAATT-TTATATTGTATT
1 ATTTAATTATTA-ATTG-ATT
7936129 ATTTAATTATTAATTGATT
1 ATTTAATTATTAATTGATT
7936148 ATT
1 ATT
7936151 CAGTAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.29
20 12 0.57
21 3 0.14
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
ATTTAATTATTAATTGATT
Found at i:7936334 original size:15 final size:15
Alignment explanation
Indices: 7936311--7936344 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
7936301 TTTTTAAATA
*
7936311 TTTATATTAAATAAT
1 TTTAAATTAAATAAT
7936326 TTTAAATTAAATAAT
1 TTTAAATTAAATAAT
7936341 TTTA
1 TTTA
7936345 TAAAGAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTAAATTAAATAAT
Found at i:7936358 original size:18 final size:18
Alignment explanation
Indices: 7936335--7936374 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
7936325 TTTTAAATTA
7936335 AATAAT-TTTATAAAGAAT
1 AATAATATTTATAAA-AAT
*
7936353 AATAATATTTATTAAAAT
1 AATAATATTTATAAAAAT
7936371 AATA
1 AATA
7936375 TAGTAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (18 bp):
AATAATATTTATAAAAAT
Found at i:7938889 original size:43 final size:43
Alignment explanation
Indices: 7938840--7938928 Score: 160
Period size: 43 Copynumber: 2.1 Consensus size: 43
7938830 TATGCCCATC
* *
7938840 TTACTATTTTGGTTAAATTCTATGACAGCCTATATATTTAGGA
1 TTACTATTTTGGTTAAATCCTATGACAGCCTATATATCTAGGA
7938883 TTACTATTTTGGTTAAATCCTATGACAGCCTATATATCTAGGA
1 TTACTATTTTGGTTAAATCCTATGACAGCCTATATATCTAGGA
7938926 TTA
1 TTA
7938929 GTATGTATTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (43 bp):
TTACTATTTTGGTTAAATCCTATGACAGCCTATATATCTAGGA
Found at i:7941429 original size:29 final size:29
Alignment explanation
Indices: 7941387--7941449 Score: 117
Period size: 29 Copynumber: 2.2 Consensus size: 29
7941377 AAGTTTTTGA
*
7941387 CTTTGATCTCTTTTGCTATCATTTCCACC
1 CTTTAATCTCTTTTGCTATCATTTCCACC
7941416 CTTTAATCTCTTTTGCTATCATTTCCACC
1 CTTTAATCTCTTTTGCTATCATTTCCACC
7941445 CTTTA
1 CTTTA
7941450 TAACACCAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.16, C:0.30, G:0.05, T:0.49
Consensus pattern (29 bp):
CTTTAATCTCTTTTGCTATCATTTCCACC
Found at i:7944213 original size:371 final size:369
Alignment explanation
Indices: 7943512--7946233 Score: 3971
Period size: 369 Copynumber: 7.4 Consensus size: 369
7943502 TTAGTGCAGA
** * *
7943512 TGTCACGGGTCGAGACTTAAGCTCCGAACTTGCGCAGCTCCGAGACCCGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* * *
7943577 GCATCCCAGATCAACCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTAGCCCCCC
66 GCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCT-G-GCCCC
7943642 CTTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
129 C-TGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
* * * *
7943707 TACTCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTC-CCCTTTAGGTCCGTGACA
193 TACCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCC-TTAGGTCCGTGACA
* *
7943771 TTCTCCCGCACCCAACCTCATGACGCCCTCGTCACGAAGGCTGGCCACCCTGCCTACCTCCCTCG
257 TTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCG
* *
7943836 AGGTGCTTGGCGTGGATCGAACGGTTTTAGGGCTGACTCTAATACCACT
322 AGGTGCTTGGCGTGGATCGAACGG-TTTAGGGCTGGCTCTGATACCACT
* * *
7943885 TGTTACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCAGGGTATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* * *
7943950 GCATCCCAGATCAACCTTCCGCCACGGTTCACACCCTTGTGAGATATTGTCCGCTCTGGCCCCCT
66 GCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC-
7944015 TGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTATA
130 TGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTATA
* * *
7944080 CTCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCATGACTCTTCCTTAGGTTCGTGACATTC
195 CCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATTC
* * * * ** **
7944145 TCTCGCATCCAACCTCGTGACGCCCTCGTCACGGAGGCTGACCACCCTACCTGTCTCCCTTAAGG
260 TCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCGAGG
* *
7944210 TGCTTGGCGTGGATCAAACGGTTTAGGGCTGACTCTGATACCACT
325 TGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
* * *
7944255 TGTCACGGGTCGAGACTTAAGCTCCGAACTCGCGCTGCTCCGGGACTCGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* * *
7944320 GTGTCCCAGATCAGCTTTCCGCCACGGTTCATACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCT
66 GCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCT
* * * * * *
7944385 AGCCTCACGGTTTTATCCTACAAAAGGCACCTCACAAGGCGAAGATGATGTAAACCCTTTTATAC
131 GGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTATAC
* *
7944450 CCCAGGGAACCTCCTATTATGTTCGATGTGGGATTCAAGACTCTTCCTTAGGTCCGTGACATTCT
196 CCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATTCT
* * *
7944515 CCCGCACCCAACCTCGTGACGCCCTCATCACGGAGGCTGGCCACCCTACCTACCTCCCTCGAGGC
261 CCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCGAGGT
*
7944580 GCTTGGCGTGGATCGAGCGGTTTAGGGCTGGCTCTGATACCACT
326 GCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
* * * * *
7944624 TGTCACGGGTCGAGACTTAAACTTCGAACCCGCGTGGCTCCGGGACCCGAGCATTCACCCTTCTG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* * *
7944689 AG-GTCCCAGATCAGCCTTTCGTCACGATTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
66 -GCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
* * * * *
7944753 TAGCCTCACGGTTTTGTCCTACAAAAAGTGCCTCACAAGGCGGAGATGATGTCAACCCTTTTATA
130 TGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTATA
* * * * ** *
7944818 CCCCAGTGACCTTCCTATTATGTTCGATGTGAGATTCAAGACTCCCCCTTAGGTCCATGACATTC
195 CCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATTC
* * * * * *
7944883 TACCGCACTCAATCTCGTGACGCCCTCGTCATGGAGGCTGGCCACCCTGCCTACCTCCCTCAAGA
260 TCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCGAGG
* * *
7944948 AGCTCGGTGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
325 TGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
* * * *
7944993 TGTCACGGGTTGAGACTTAAGCTCCGAACCCACGCGGCTCCGGGACCCGGCCATTCACCCTTTCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* *
7945058 GCGTCCCAGATCAGCCTTCCTGCCACGGTTCACACCTTTATGAGGTATTGTCCGCTCTGGCCCCC
66 GCGTCCCAGATCAGCCTTCC-GCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGG-CCCC
* * *
7945123 CTGGCCTTACGGTTTTGTCCTACAAAAGGCGTCTCACAAGGCGGAGGTGGTGTGAACCCTTTTAT
129 CTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTAT
*
7945188 ACCCTAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATT
194 ACCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATT
* * * * *
7945253 CTCCCGCACTCAACCTCGTCACGCCCTCGTCACGGAGGCTGACCACCCTGCTTGCCTCCCTCGAG
259 CTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCGAG
*
7945318 GTGCTTGGCGTGGATCGAACGGTTTAGGGTTGGCTCTGATACCACT
324 GTGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
* *
7945364 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTTCGGGACCTGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
*
7945429 ACGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCT
66 GCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCT
* * * *
7945494 GACCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGACGGAGATGATGTAAACCCTTTTATAC
131 GGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTATAC
* * *
7945559 CCCAGGGACCTTCCTATTATGTTCGATGTGGGATTTAGGACTCTTCCTTAGGTCCGTGATATTCT
196 CCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATTCT
* *
7945624 CCCGCACCCAACCTCATGACACCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCGAGGT
261 CCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCGAGGT
7945689 GCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
326 GCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
* * *
7945733 TGTCACAGGTCAAGACTTAAGCTCCGAACCCGCGCGGCT-------CTGGG----CA----T---
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
*
7945780 ---T-CCAGATCAGCCTTCCTGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTAGCCCCC
66 GCGTCCCAGATCAGCCTTCC-GCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCT-GGCCCC
* * * *
7945841 CTAGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGACGGAGGTTGTGTGAACCCTTTTAT
129 CTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTAT
* *
7945906 ACCCCAGGGAACCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCTGTGACATT
194 ACCCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATT
* *
7945971 CTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGTCACCCTACCTACCTCCCTCGAG
259 CTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCGAG
* * * *
7946036 GCGCTTGGCGTGAATCGAGCAGTTTAGGGCTGGCTCTGATACCACT
324 GTGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
* *
7946082 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCTGGGTATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* * * *
7946147 GCGTCTCAGATCAGCCTTCCGTCACGGTTCACACCCTTGTAAGGTATTATCCGCTCTGGCCCCCT
66 GCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC-
* *
7946212 TGACCTCATGGTTTTGTCCTAC
130 TGGCCTCACGGTTTTGTCCTAC
7946234 TAAATTTTGA
Statistics
Matches: 2118, Mismatches: 201, Indels: 63
0.89 0.08 0.03
Matches are distributed among these distances:
347 15 0.01
348 38 0.02
349 264 0.12
354 1 0.00
356 5 0.00
358 2 0.00
360 2 0.00
362 5 0.00
364 1 0.00
368 1 0.00
369 889 0.42
370 267 0.13
371 511 0.24
372 3 0.00
373 114 0.05
ACGTcount: A:0.18, C:0.33, G:0.24, T:0.25
Consensus pattern (369 bp):
TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
GCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCT
GGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTATAC
CCCAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATTCT
CCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCGAGGT
GCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
Found at i:7945394 original size:740 final size:738
Alignment explanation
Indices: 7943512--7946233 Score: 4015
Period size: 740 Copynumber: 3.7 Consensus size: 738
7943502 TTAGTGCAGA
** * *
7943512 TGTCACGGGTCGAGACTTAAGCTCCGAACTTGCGCAGCTCCGAGACCCGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* * *
7943577 GCATCCCAGATCAACCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTAGCCCCCC
66 GCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCT-GGCCCCC
*
7943642 CTTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
130 C-TAGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
* * *
7943707 TACTCCAGTG-ACCTTCCTATTATGTTCGATGTGGGATTCAGGACTC-CCCTTTAGGTCCGTGAC
194 TACCCCAGGGAACC-TCCTATTATGTTCGATGTGGGATTCAGGACTCTTCC-TTAGGTCCGTGAC
* * *
7943770 ATTCTCCCGCACCCAACCTCATGACGCCCTCGTCACGAAGGCTGGCCACCCTGCCTACCTCCCTC
257 ATTCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTACCTACCTCCCTC
* * * *
7943835 GAGGTGCTTGGCGTGGATCGAACGGTTTTAGGGCTGACTCTAATACCACTTGTTACGGGTCGAGA
322 GAGGCGCTTGGCGTGGATCGAACGG-TTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGA
* * * *
7943900 CTTAAGCTCCGAACCCGCGCGGCTCCGGGACCAGGGTATTCACCCTTCCGGCATCCCAGATCAAC
386 CTTAAGCTCCGAACCCGCGCGGCTCCGGGACCTGGGCATTCACCCTTCCGGCGTCCCAGATCAGC
* *
7943965 CTTCCGCCACGGTTCACACCCTTGTGAGATATTGTCCGCTCTGGCCCCCTTGGCCTCACGGTTTT
451 CTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC-TGACCTCACGGTTTT
* * * *
7944030 GTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTATACTCCAGGGACCCTCC
515 GTCCTACAAAAGGCGCCTCACAAGGCGGAGATGATGTAAACCCTTTTATACCCCAGGGACCTTCC
* *
7944095 TATTATGTTCGATGTGGGATTCATGACTCTTCCTTAGGTTCGTGACATTCTCTCGCA-TCCAACC
580 TATTATGTTCGATGTGGGATTCAAGACTCTTCCTTAGGTCCGTGACATTCTC-CGCACT-CAACC
* * ** *
7944159 TCGTGACGCCCTCGTCACGGAGGCTGACCACCCTACCTGTCTCCCTTAAGGTGCTTGGCGTGGAT
643 TCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCAAGGTGCTTGGCGTGGAT
* *
7944224 CAAACGGTTTAGGGCTGACTCTGATACCACT
708 CGAACGGTTTAGGGCTGGCTCTGATACCACT
* * *
7944255 TGTCACGGGTCGAGACTTAAGCTCCGAACTCGCGCTGCTCCGGGACTCGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* * *
7944320 GTGTCCCAGATCAGCTTTCCGCCACGGTTCATACCCTTGTGAGGTATTGTCCGCTCTGG-CCCCC
66 GCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCC
* * * * *
7944384 TAGCCTCACGGTTTTATCCTACAAAAGGCACCTCACAAGGCGAAGATGATGTAAACCCTTTTATA
131 TAGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTATA
*
7944449 CCCCAGGGAACCTCCTATTATGTTCGATGTGGGATTCAAGACTCTTCCTTAGGTCCGTGACATTC
196 CCCCAGGGAACCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATTC
*
7944514 TCCCGCACCCAACCTCGTGACGCCCTCATCACGGAGGCTGGCCACCCTACCTACCTCCCTCGAGG
261 TCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTACCTACCTCCCTCGAGG
*
7944579 CGCTTGGCGTGGATCGAGCGGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAA
326 CGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAA
* * * * * * *
7944644 ACTTCGAACCCGCGTGGCTCCGGGACCCGAGCATTCACCCTTCTGAG-GTCCCAGATCAGCCTTT
391 GCTCCGAACCCGCGCGGCTCCGGGACCTGGGCATTCACCCTTCCG-GCGTCCCAGATCAGCCTTC
* *
7944708 CGTCACGATTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCT-AGCCTCACGGTTTTGTCC
455 CGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCTGA-CCTCACGGTTTTGTCC
* * * *
7944772 TACAAAAAGTGCCTCACAAGGCGGAGATGATGTCAACCCTTTTATACCCCAGTGACCTTCCTATT
519 TACAAAAGGCGCCTCACAAGGCGGAGATGATGTAAACCCTTTTATACCCCAGGGACCTTCCTATT
* ** * *
7944837 ATGTTCGATGTGAGATTCAAGACTCCCCCTTAGGTCCATGACATTCTACCGCACTCAATCTCGTG
584 ATGTTCGATGTGGGATTCAAGACTCTTCCTTAGGTCCGTGACATTCT-CCGCACTCAACCTCGTG
* ** * *
7944902 ACGCCCTCGTCATGGAGGCTGGCCACCCTGCCTACCTCCCTCAAGAAGCTCGGTGTGGATCGAAC
648 ACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCAAGGTGCTTGGCGTGGATCGAAC
7944967 GGTTTAGGGCTGGCTCTGATACCACT
713 GGTTTAGGGCTGGCTCTGATACCACT
* * * *
7944993 TGTCACGGGTTGAGACTTAAGCTCCGAACCCACGCGGCTCCGGGACCCGGCCATTCACCCTTTCG
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* *
7945058 GCGTCCCAGATCAGCCTTCCTGCCACGGTTCACACCTTTATGAGGTATTGTCCGCTCTGGCCCCC
66 GCGTCCCAGATCAGCCTTCC-GCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
* * * *
7945123 CTGGCCTTACGGTTTTGTCCTACAAAAGGCGTCTCACAAGGCGGAGGTGGTGTGAACCCTTTTAT
130 CTAGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTAT
* *
7945188 ACCCTAGGGACCCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATT
195 ACCCCAGGGAACCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATT
* * * * * *
7945253 CTCCCGCACTCAACCTCGTCACGCCCTCGTCACGGAGGCTGACCACCCTGCTTGCCTCCCTCGAG
260 CTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTACCTACCTCCCTCGAG
* *
7945318 GTGCTTGGCGTGGATCGAACGGTTTAGGGTTGGCTCTGATACCACTTGTCACGGGTCGAGACTTA
325 GCGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTA
* *
7945383 AGCTCCGAACCCGCGCGGCTTCGGGACCTGGGCATTCACCCTTCCGACGTCCCAGATCAGCCTTC
390 AGCTCCGAACCCGCGCGGCTCCGGGACCTGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTC
7945448 CGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCTGACCTCACGGTTTTGTCCT
455 CGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCTGACCTCACGGTTTTGTCCT
*
7945513 ACAAAAGGCGCCTCACAAGACGGAGATGATGTAAACCCTTTTATACCCCAGGGACCTTCCTATTA
520 ACAAAAGGCGCCTCACAAGGCGGAGATGATGTAAACCCTTTTATACCCCAGGGACCTTCCTATTA
* * * * *
7945578 TGTTCGATGTGGGATTTAGGACTCTTCCTTAGGTCCGTGATATTCTCCCGCACCCAACCTCATGA
585 TGTTCGATGTGGGATTCAAGACTCTTCCTTAGGTCCGTGACATTCT-CCGCACTCAACCTCGTGA
* *
7945643 CACCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCGAGGTGCTTGGCGTGGATCGAACG
649 CGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCAAGGTGCTTGGCGTGGATCGAACG
7945708 GTTTAGGGCTGGCTCTGATACCACT
714 GTTTAGGGCTGGCTCTGATACCACT
* * *
7945733 TGTCACAGGTCAAGACTTAAGCTCCGAACCCGCGCGGCT-------CTGGG----CA----T---
1 TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
*
7945780 ---T-CCAGATCAGCCTTCCTGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTAGCCCCC
66 GCGTCCCAGATCAGCCTTCC-GCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
* * *
7945841 CTAGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGACGGAGGTTGTGTGAACCCTTTTAT
130 CTAGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTAT
*
7945906 ACCCCAGGGAACCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCTGTGACATT
195 ACCCCAGGGAACCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATT
*
7945971 CTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGTCACCCTACCTACCTCCCTCGAG
260 CTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTACCTACCTCCCTCGAG
* * *
7946036 GCGCTTGGCGTGAATCGAGCAGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTA
325 GCGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTA
* *
7946101 AGCTCCGAACCCGCGCGGCTCCGGGACCTGGGTATTCACCCTTCCGGCGTCTCAGATCAGCCTTC
390 AGCTCCGAACCCGCGCGGCTCCGGGACCTGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTC
* * * *
7946166 CGTCACGGTTCACACCCTTGTAAGGTATTATCCGCTCTGGCCCCCTTGACCTCATGGTTTTGTCC
455 CGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC-TGACCTCACGGTTTTGTCC
7946231 TAC
519 TAC
7946234 TAAATTTTGA
Statistics
Matches: 1794, Mismatches: 174, Indels: 46
0.89 0.09 0.02
Matches are distributed among these distances:
718 400 0.22
719 22 0.01
725 1 0.00
729 2 0.00
733 3 0.00
738 284 0.16
739 173 0.10
740 784 0.44
741 11 0.01
742 1 0.00
743 113 0.06
ACGTcount: A:0.18, C:0.33, G:0.24, T:0.25
Consensus pattern (738 bp):
TGTCACGGGTCGAGACTTAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
GCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCC
TAGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTATA
CCCCAGGGAACCTCCTATTATGTTCGATGTGGGATTCAGGACTCTTCCTTAGGTCCGTGACATTC
TCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTACCTACCTCCCTCGAGG
CGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACTTGTCACGGGTCGAGACTTAA
GCTCCGAACCCGCGCGGCTCCGGGACCTGGGCATTCACCCTTCCGGCGTCCCAGATCAGCCTTCC
GCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCCTGACCTCACGGTTTTGTCCTA
CAAAAGGCGCCTCACAAGGCGGAGATGATGTAAACCCTTTTATACCCCAGGGACCTTCCTATTAT
GTTCGATGTGGGATTCAAGACTCTTCCTTAGGTCCGTGACATTCTCCGCACTCAACCTCGTGACG
CCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCAAGGTGCTTGGCGTGGATCGAACGGT
TTAGGGCTGGCTCTGATACCACT
Found at i:7951896 original size:18 final size:18
Alignment explanation
Indices: 7951875--7951909 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7951865 ATTAAATTTA
*
7951875 TTTTTATATATTATTTTG
1 TTTTTAAATATTATTTTG
*
7951893 TTTTTAAATTTTATTTT
1 TTTTTAAATATTATTTT
7951910 AAAAATTAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTTTAAATATTATTTTG
Found at i:7952040 original size:11 final size:10
Alignment explanation
Indices: 7952015--7952039 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7952005 AATAATATAT
7952015 AAAAATTCAA
1 AAAAATTCAA
7952025 AAAAATTCAA
1 AAAAATTCAA
7952035 AAAAA
1 AAAAA
7952040 AAATTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAATTCAA
Found at i:7952655 original size:20 final size:19
Alignment explanation
Indices: 7952632--7952677 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
7952622 AAACTATATA
**
7952632 TTTTTTTGTATTCTGACTCT
1 TTTTTTTGTAAACTGACT-T
*
7952652 TTTTTTTTTAAACTGACTT
1 TTTTTTTGTAAACTGACTT
7952671 TTTTTTT
1 TTTTTTT
7952678 CTTCGTGCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.13, C:0.11, G:0.07, T:0.70
Consensus pattern (19 bp):
TTTTTTTGTAAACTGACTT
Found at i:7953119 original size:20 final size:20
Alignment explanation
Indices: 7953081--7953120 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
7953071 TTTGTTTTTT
*
7953081 TTTCATATTTTTTTATTATA
1 TTTCATATTTTTATATTATA
7953101 TTTCATA-TTTTATACTTATA
1 TTTCATATTTTTATA-TTATA
7953121 CTTTGTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTCATATTTTTATATTATA
Found at i:7953398 original size:47 final size:47
Alignment explanation
Indices: 7953302--7953731 Score: 569
Period size: 47 Copynumber: 9.0 Consensus size: 47
7953292 ATTTAAAATC
* *
7953302 TGAAAAAGCTCCTCTCAACAGAGGCT-AACAACTTTAAAATCTCACT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATT
*
7953348 TGAAAAAGCTCCTCCCAGCAGAGGCTCAACAACTTTAAAATCTCATT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATT
* * * *
7953395 TGAAAAAGCTCTTCTCAACAGAGGCTTAACAATTTTAAAATCTCATT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATT
* *
7953442 TGAAAAAGCTCCTCTCAGCAGAAGCTTAACAACTTTAAAAATCTCATCT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTCAT-T
* *
7953491 TGGAAAAGGCTCCTCT--GCTAAGAGGCTCAACAACTTTAAAATTTCATCT
1 T-GAAAAAGCTCCTCTCAGC--AGAGGCTCAACAACTTTAAAATCTCAT-T
* * * *
7953540 TGGAAAAGGCTCCTTTCAGTAGAGGTTCAACAACTTTAAAATCTCATT
1 T-GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATT
* * * *
7953588 TAAAAAAGCTCATCTCAGTAGAGGCTCAACAACTTTAAAATTTCATCT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCAT-T
*
7953636 TAGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATT
1 T-GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATT
*
7953684 TGAAAAAGCTCCTCTCAGCAGAGACTCAACAACTTTAAAATCTCATT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATT
7953731 T
1 T
7953732 TCTCTCAAAA
Statistics
Matches: 341, Mismatches: 33, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
46 24 0.07
47 177 0.52
48 18 0.05
49 93 0.27
50 28 0.08
51 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (47 bp):
TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATT
Found at i:7953630 original size:96 final size:95
Alignment explanation
Indices: 7953302--7953729 Score: 578
Period size: 96 Copynumber: 4.5 Consensus size: 95
7953292 ATTTAAAATC
* *
7953302 TGAAAAAGCTCCTCTCAACAGAGGCT-AACAACTTTAAAATCTCA-CTTGAAAAAGCTCCTCCCA
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCCTCTCA
7953365 GCAGAGGCTCAACAACTTTAAAATCTCATT
66 GCAGAGGCTCAACAACTTTAAAATCTCATT
* * * *
7953395 TGAAAAAGCTCTTCTCAACAGAGGCTTAACAATTTTAAAATCTCAT-TTGAAAAAGCTCCTCTCA
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCCTCTCA
* *
7953459 GCAGAAGCTTAACAACTTTAAAAATCTCATCT
66 GCAGAGGCTCAACAACTTT-AAAATCTCAT-T
* * *
7953491 TGGAAAAGGCTCCTCT--GCTAAGAGGCTCAACAACTTTAAAATTTCATCTTGGAAAAGGCTCCT
1 T-GAAAAAGCTCCTCTCAGC--AGAGGCTCAACAACTTTAAAATCTCATCTT-GAAAAAGCTCCT
* * *
7953554 TTCAGTAGAGGTTCAACAACTTTAAAATCTCATT
62 CTCAGCAGAGGCTCAACAACTTTAAAATCTCATT
* * * * *
7953588 TAAAAAAGCTCATCTCAGTAGAGGCTCAACAACTTTAAAATTTCATCTTAGAAAAGGCTCCTCTC
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTT-GAAAAAGCTCCTCTC
7953653 AGCAGAGGCTCAACAACTTTAAAATCTCATT
65 AGCAGAGGCTCAACAACTTTAAAATCTCATT
*
7953684 TGAAAAAGCTCCTCTCAGCAGAGACTCAACAACTTTAAAATCTCAT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCAT
7953730 TTTCTCTCAA
Statistics
Matches: 294, Mismatches: 30, Indels: 19
0.86 0.09 0.06
Matches are distributed among these distances:
93 25 0.09
94 51 0.17
95 11 0.04
96 127 0.43
97 38 0.13
98 13 0.04
99 29 0.10
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (95 bp):
TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCCTCTCA
GCAGAGGCTCAACAACTTTAAAATCTCATT
Found at i:7963592 original size:15 final size:16
Alignment explanation
Indices: 7963572--7963609 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
7963562 TGTTAGTCGA
7963572 TTATTTAATGAT-TTT
1 TTATTTAATGATATTT
*
7963587 TTATTTAATTATATTT
1 TTATTTAATGATATTT
*
7963603 TAATTTA
1 TTATTTA
7963610 TTAAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (16 bp):
TTATTTAATGATATTT
Found at i:7964759 original size:20 final size:20
Alignment explanation
Indices: 7964734--7964796 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
7964724 TCAATTAATA
*
7964734 AATTATTGATGGACATTATT
1 AATTATTGATGGATATTATT
**
7964754 AATTA-T-ATGTTTA-TATT
1 AATTATTGATGGATATTATT
*
7964771 AATTATTGATGGGTATTATT
1 AATTATTGATGGATATTATT
7964791 AATTAT
1 AATTAT
7964797 ATGTTTATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
17 9 0.26
18 5 0.14
19 6 0.17
20 15 0.43
ACGTcount: A:0.35, C:0.02, G:0.13, T:0.51
Consensus pattern (20 bp):
AATTATTGATGGATATTATT
Found at i:7964776 original size:37 final size:37
Alignment explanation
Indices: 7964734--7964804 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
7964724 TCAATTAATA
7964734 AATTATTGATGGACATTATTAATTATATGTTTATATT
1 AATTATTGATGGACATTATTAATTATATGTTTATATT
**
7964771 AATTATTGATGGGTATTATTAATTATATGTTTAT
1 AATTATTGATGGACATTATTAATTATATGTTTAT
7964805 GTTATTTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.34, C:0.01, G:0.13, T:0.52
Consensus pattern (37 bp):
AATTATTGATGGACATTATTAATTATATGTTTATATT
Found at i:7964810 original size:20 final size:18
Alignment explanation
Indices: 7964748--7964804 Score: 71
Period size: 17 Copynumber: 3.1 Consensus size: 18
7964738 ATTGATGGAC
7964748 ATTATTAATTATATGTTT
1 ATTATTAATTATATGTTT
**
7964766 A-TATTAATTATTGATGGGT
1 ATTATTAATTA-T-ATGTTT
7964785 ATTATTAATTATATGTTT
1 ATTATTAATTATATGTTT
7964803 AT
1 AT
7964805 GTTATTTTAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
17 9 0.28
18 8 0.25
19 6 0.19
20 9 0.28
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (18 bp):
ATTATTAATTATATGTTT
Found at i:7964880 original size:20 final size:20
Alignment explanation
Indices: 7964844--7964881 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7964834 AAATCTTTTA
*
7964844 AATTATGAAAGTAGAATTAG
1 AATTATGAAACTAGAATTAG
7964864 AATTATGATAACT-GAATT
1 AATTATGA-AACTAGAATT
7964882 CTATGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.47, C:0.03, G:0.16, T:0.34
Consensus pattern (20 bp):
AATTATGAAACTAGAATTAG
Found at i:7986338 original size:52 final size:52
Alignment explanation
Indices: 7986183--7986339 Score: 194
Period size: 52 Copynumber: 3.0 Consensus size: 52
7986173 TATAACCATA
* * * ** *
7986183 CAAATTTGTCTATTAAGAATCTCTTTCCTTTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTGACTATTAAGAATCTCTTTCCTTTTAAAATTCTTCTTTTGCAAGT
*
7986235 CAAACTTGACTATTAAGAATCTCTTTCCTTTTATAATTCTTCTCTTT-CAAGT
1 CAAACTTGACTATTAAGAATCTCTTTCCTTTTAAAATTCTTCT-TTTGCAAGT
*
7986287 CAAACTT-ACCTATTAAGAATCCTCTTT-CTCTTAAAATTCTTCTTTTGCAAGT
1 CAAACTTGA-CTATTAAGAAT-CTCTTTCCTTTTAAAATTCTTCTTTTGCAAGT
7986339 C
1 C
7986340 TTCTTATTTA
Statistics
Matches: 93, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
51 4 0.04
52 82 0.88
53 7 0.08
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.45
Consensus pattern (52 bp):
CAAACTTGACTATTAAGAATCTCTTTCCTTTTAAAATTCTTCTTTTGCAAGT
Found at i:7987858 original size:15 final size:15
Alignment explanation
Indices: 7987838--7987873 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
7987828 CTTGACACTA
*
7987838 TTTATCTATGTTTGT
1 TTTATCGATGTTTGT
7987853 TTTATCGATGTTTGT
1 TTTATCGATGTTTGT
7987868 TTTATC
1 TTTATC
7987874 AAACTTGGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.08, G:0.14, T:0.64
Consensus pattern (15 bp):
TTTATCGATGTTTGT
Found at i:7988897 original size:16 final size:16
Alignment explanation
Indices: 7988878--7988911 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
7988868 AAATCCAAGA
7988878 AAATAAAA-AAGAAAAG
1 AAATAAAACAA-AAAAG
7988894 AAATAAAACAAAAAAG
1 AAATAAAACAAAAAAG
7988910 AA
1 AA
7988912 GAAAAAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.82, C:0.03, G:0.09, T:0.06
Consensus pattern (16 bp):
AAATAAAACAAAAAAG
Found at i:7988906 original size:19 final size:18
Alignment explanation
Indices: 7988874--7988919 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
7988864 AAAAAAATCC
*
7988874 AAGAAAATAAA-AAAGAA-
1 AAGAAAA-AAACAAAAAAG
7988891 AAGAAATAAAACAAAAAAG
1 AAGAAA-AAAACAAAAAAG
7988910 AAGAAAAAAA
1 AAGAAAAAAA
7988920 TGATTCATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 9 0.36
18 10 0.40
19 6 0.24
ACGTcount: A:0.83, C:0.02, G:0.11, T:0.04
Consensus pattern (18 bp):
AAGAAAAAAACAAAAAAG
Found at i:7989176 original size:58 final size:59
Alignment explanation
Indices: 7989022--7989256 Score: 384
Period size: 58 Copynumber: 4.0 Consensus size: 59
7989012 AAACCTTTTT
* * *
7989022 TTTTTTAAAAAAACTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAGAAATA
1 TTTTTTAGAAAAACTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA
7989081 TTTTTTAGAAAAACTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA
1 TTTTTTAGAAAAACTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA
* * *
7989140 TTTTTTAG-AAAGCTTATTTTCAAGGAAAATTAATACTTTCAACTTTTCCTC-AAAATA
1 TTTTTTAGAAAAACTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA
* *
7989197 TTTTTTAGAAAAACTTATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATA
1 TTTTTTAGAAAAACTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA
7989256 T
1 T
7989257 ATATTTTTTA
Statistics
Matches: 165, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
57 14 0.08
58 80 0.48
59 71 0.43
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (59 bp):
TTTTTTAGAAAAACTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA
Found at i:7989289 original size:6 final size:6
Alignment explanation
Indices: 7989280--7989333 Score: 69
Period size: 6 Copynumber: 9.5 Consensus size: 6
7989270 TTATTTAAAG
* *
7989280 AAATAA AAATAA AAATAA AAATAA AGATAA AAAT-A GAAT-A AAAT-A
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
7989325 AAATAA AAA
1 AAATAA AAA
7989334 ATACTAAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
5 13 0.30
6 30 0.70
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:7989293 original size:5 final size:5
Alignment explanation
Indices: 7989280--7989332 Score: 52
Period size: 5 Copynumber: 9.6 Consensus size: 5
7989270 TTATTTAAAG
*
7989280 AAATAA AAATAA AAATAA AAATA AAGATAA AAATA GAATA AAATA AAATA
1 AAAT-A AAAT-A AAAT-A AAATA AA-AT-A AAATA AAATA AAATA AAATA
7989330 AAA
1 AAA
7989333 AATACTAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
5 20 0.47
6 20 0.47
7 3 0.07
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:7989432 original size:13 final size:13
Alignment explanation
Indices: 7989414--7989449 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
7989404 AACCTAGGAA
7989414 CGGCTCGGCTTAG
1 CGGCTCGGCTTAG
7989427 CGGCTCGGCTTAG
1 CGGCTCGGCTTAG
7989440 CGGCTCGGCT
1 CGGCTCGGCT
7989450 CGACTCGGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.06, C:0.33, G:0.39, T:0.22
Consensus pattern (13 bp):
CGGCTCGGCTTAG
Found at i:7990256 original size:42 final size:40
Alignment explanation
Indices: 7990203--7990316 Score: 129
Period size: 42 Copynumber: 2.7 Consensus size: 40
7990193 AAATTAAAAG
* *
7990203 AAAATGTTAATAGATAATTAAAAGAAAATAATTAGATAAATA
1 AAAATATTAATAGATAAATAAAA-AAAATAA-TAGATAAATA
*
7990245 AAAATATTAATAGATAAATAAAAATAATAATAGATAAATA
1 AAAATATTAATAGATAAATAAAAAAAATAATAGATAAATA
** *
7990285 ATAATATACAAATAGATAAATAATAATAAATA
1 A-AA-ATATTAATAGATAAATAA-AAAAAATA
7990317 CATATATATT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
40 11 0.18
41 8 0.13
42 37 0.60
43 6 0.10
ACGTcount: A:0.65, C:0.01, G:0.06, T:0.28
Consensus pattern (40 bp):
AAAATATTAATAGATAAATAAAAAAAATAATAGATAAATA
Found at i:7990260 original size:20 final size:20
Alignment explanation
Indices: 7990210--7990313 Score: 120
Period size: 20 Copynumber: 5.0 Consensus size: 20
7990200 AAGAAAATGT
* *
7990210 TAATAGATAATTAAAAGAAAA
1 TAATAGATAAATAAAA-ATAA
*
7990231 TAATTAGATAAATAAAAATAT
1 TAA-TAGATAAATAAAAATAA
7990252 TAATAGATAAATAAAAATAA
1 TAATAGATAAATAAAAATAA
7990272 TAATAGATAAATAATAATATACA
1 TAATAGATAAATAA-AA-ATA-A
*
7990295 -AATAGATAAATAATAATAA
1 TAATAGATAAATAAAAATAA
7990314 ATACATATAT
Statistics
Matches: 74, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
19 1 0.01
20 33 0.45
21 11 0.15
22 28 0.38
23 1 0.01
ACGTcount: A:0.65, C:0.01, G:0.06, T:0.28
Consensus pattern (20 bp):
TAATAGATAAATAAAAATAA
Found at i:7990265 original size:4 final size:4
Alignment explanation
Indices: 7990228--7990422 Score: 79
Period size: 4 Copynumber: 49.2 Consensus size: 4
7990218 AATTAAAAGA
* * * * *
7990228 AAAT AATT AGAT AAAT AAA- AATAT TAAT AGAT AAAT AAAA ATAAT -AAT
1 AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT A-AAT AAAT
* * * *
7990276 AGAT AAAT -AAT -AAT ATAC AAAT AGAT AAAT -AAT -AAT AAAT ACATAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-A-AT
* * * * *
7990322 ATAT TAAC AGAT AAAT -AAT AAA- AAAT ATATAT TAAT AAAT AGTAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-A-AT AAAT AAAT A--AAT
* * *
7990368 -AAT AAAT AAAT AAAT -AAT AAAT ACAC AAGAT ACA- AAAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT
7990414 AAAT AAAT A
1 AAAT AAAT A
7990423 TAAATATAAA
Statistics
Matches: 139, Mismatches: 34, Indels: 36
0.67 0.16 0.17
Matches are distributed among these distances:
3 31 0.22
4 92 0.66
5 8 0.06
6 8 0.06
ACGTcount: A:0.66, C:0.03, G:0.04, T:0.28
Consensus pattern (4 bp):
AAAT
Found at i:7990270 original size:14 final size:13
Alignment explanation
Indices: 7990240--7990460 Score: 74
Period size: 14 Copynumber: 15.8 Consensus size: 13
7990230 ATAATTAGAT
*
7990240 AAATAA-AAATAT
1 AAATAATAAATAA
*
7990252 TAATAGATAAATAA
1 AAATA-ATAAATAA
7990266 AAATAAT-AATAGA
1 AAATAATAAATA-A
*
7990279 TAAATAATAATATAC
1 -AAATAATAA-ATAA
7990294 AAATAGATAAATAA
1 AAATA-ATAAATAA
* *
7990308 TAATAAATACATATA
1 AAAT-AATAAATA-A
* * * *
7990323 TATTAACAGATAA
1 AAATAATAAATAA
*
7990336 ATAATAAAAAATATA
1 A-AATAATAAATA-A
* * *
7990351 TATTAATAAATAG
1 AAATAATAAATAA
*
7990364 TAATAATAAATAAA
1 AAATAATAAAT-AA
7990378 TAAATAATAAATACA
1 -AAATAATAAATA-A
7990393 CAAGATACA-AAATAAA
1 -AA-ATA-ATAAAT-AA
*
7990409 TAAATAAATAAATAT
1 -AAAT-AATAAATAA
7990424 AAAT-ATAAATATA
1 AAATAATAAATA-A
*
7990437 AAATACAAAAATATA
1 AAATA-ATAAATA-A
7990452 AAAT-ATAAA
1 AAATAATAAA
7990461 GTGAGCTTAT
Statistics
Matches: 160, Mismatches: 27, Indels: 43
0.70 0.12 0.19
Matches are distributed among these distances:
12 15 0.09
13 23 0.14
14 62 0.39
15 40 0.25
16 18 0.11
17 2 0.01
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (13 bp):
AAATAATAAATAA
Found at i:7990324 original size:32 final size:31
Alignment explanation
Indices: 7990230--7990422 Score: 120
Period size: 32 Copynumber: 6.2 Consensus size: 31
7990220 TTAAAAGAAA
* *
7990230 ATAATTAGATAAATAAAAATATTAATAGATA-A-
1 ATAAATAGATAAATAATAATA--AATA-ATATAT
7990262 ATAAA-A-AT-AATAATAGATAAATAATAATAT
1 ATAAATAGATAAATAATA-ATAAATAAT-ATAT
*
7990292 ACAAATAGATAAATAATAATAAATACATATAT
1 ATAAATAGATAAATAATAATAAATA-ATATAT
* * *
7990324 ATTAACAGATAAATAATAAAAAAT-ATATATT
1 ATAAATAGATAAATAATAATAAATAATATA-T
7990355 AATAAATAG-T-AATAATAAATAAATAA-ATA-
1 -ATAAATAGATAAATAAT-AATAAATAATATAT
* * * *
7990384 ATAAATACACAAGATACAAAATAAATAA-ATAA
1 ATAAATAGATAA-ATA-ATAATAAATAATATAT
7990416 ATAAATA
1 ATAAATA
7990423 TAAATATAAA
Statistics
Matches: 131, Mismatches: 13, Indels: 34
0.74 0.07 0.19
Matches are distributed among these distances:
27 2 0.02
28 12 0.09
29 7 0.05
30 21 0.16
31 28 0.21
32 52 0.40
33 9 0.07
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.28
Consensus pattern (31 bp):
ATAAATAGATAAATAATAATAAATAATATAT
Found at i:7990427 original size:6 final size:6
Alignment explanation
Indices: 7990416--7990460 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
7990406 AAATAAATAA
*
7990416 ATAAAT ATAAAT ATAAAT ATAAA- ATACA- A-AAAT ATAAAAT ATAAA
1 ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT ATAAAT AT-AAAT ATAAA
7990461 GTGAGCTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 2 0.06
5 6 0.18
6 20 0.59
7 6 0.18
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (6 bp):
ATAAAT
Found at i:7990457 original size:7 final size:7
Alignment explanation
Indices: 7990418--7990460 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
7990408 ATAAATAAAT
7990418 AAATAT-
1 AAATATA
7990424 AAATAT-
1 AAATATA
7990430 AAATATA
1 AAATATA
*
7990437 AAATACAA
1 AAATA-TA
7990445 AAATATA
1 AAATATA
7990452 AAATATA
1 AAATATA
7990459 AA
1 AA
7990461 GTGAGCTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
6 12 0.36
7 15 0.45
8 6 0.18
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (7 bp):
AAATATA
Found at i:7990692 original size:45 final size:45
Alignment explanation
Indices: 7990636--7990803 Score: 291
Period size: 45 Copynumber: 3.7 Consensus size: 45
7990626 AAAATTTGAT
* * *
7990636 CAAAACTCCTCTAAGCAGAGGCTCAATGACTTTGAAAAACATAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAACCTAAA
*
7990681 CAAAGCTCCTCTAATCAGAGGTTCAATGACTTTGAAAAACCTAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAACCTAAA
*
7990726 CAAAGCTCCTCTAATCAGAGGTTCAATGACTTTGAAAAACCTAAA
1 CAAAGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAACCTAAA
7990771 CAAAGCTCCTCTAATCAGAGGCTCAATGACTTT
1 CAAAGCTCCTCTAATCAGAGGCTCAATGACTTT
7990804 TGGAAAGTAA
Statistics
Matches: 118, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 118 1.00
ACGTcount: A:0.39, C:0.23, G:0.14, T:0.24
Consensus pattern (45 bp):
CAAAGCTCCTCTAATCAGAGGCTCAATGACTTTGAAAAACCTAAA
Found at i:7990873 original size:41 final size:41
Alignment explanation
Indices: 7990811--7990904 Score: 136
Period size: 41 Copynumber: 2.3 Consensus size: 41
7990801 TTTTGGAAAG
*
7990811 TAAATTACTCCTCTAAACAGAGGCATCACAAC-TTCAAAGAA
1 TAAATTGCTCCTCTAAACAGAGGCATCACAACTTTCAAA-AA
* * *
7990852 TAGATTGCTCCTCTAATCAGAGGCATCACAACTTTGAAAAA
1 TAAATTGCTCCTCTAAACAGAGGCATCACAACTTTCAAAAA
7990893 TAAATTGCTCCT
1 TAAATTGCTCCT
7990905 TGACAATCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 42 0.89
42 5 0.11
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (41 bp):
TAAATTGCTCCTCTAAACAGAGGCATCACAACTTTCAAAAA
Found at i:7991918 original size:10 final size:9
Alignment explanation
Indices: 7991895--7991962 Score: 59
Period size: 9 Copynumber: 7.3 Consensus size: 9
7991885 GCCTTGAGTC
7991895 TTCCTTTTTCT
1 TTCC-TTTT-T
7991906 TTCACTTTTT
1 TTC-CTTTTT
7991916 TTCCTTTTT
1 TTCCTTTTT
7991925 TT--TTTTT
1 TTCCTTTTT
*
7991932 TTCATTTTT
1 TTCCTTTTT
*
7991941 TCCCATTTTT
1 TTCC-TTTTT
*
7991951 TTCTTTTTT
1 TTCCTTTTT
7991960 TTC
1 TTC
7991963 AAGCATAATA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
7 7 0.14
9 23 0.47
10 11 0.22
11 7 0.14
12 1 0.02
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.76
Consensus pattern (9 bp):
TTCCTTTTT
Found at i:7991926 original size:24 final size:24
Alignment explanation
Indices: 7991899--7991956 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
7991889 TGAGTCTTCC
* *
7991899 TTTTTCTTTCACTTTTTTTCCTTTTT
1 TTTTTCTTTCA--TTTTTTCCCTATT
*
7991925 TTTTTTTTTCATTTTTTCCC-ATT
1 TTTTTCTTTCATTTTTTCCCTATT
7991948 TTTTTCTTT
1 TTTTTCTTT
7991957 TTTTTCAAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
23 10 0.36
24 8 0.29
26 10 0.36
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTCTTTCATTTTTTCCCTATT
Found at i:7991932 original size:16 final size:16
Alignment explanation
Indices: 7991911--7991941 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7991901 TTTCTTTCAC
*
7991911 TTTTTTTCCTTTTTTT
1 TTTTTTTCATTTTTTT
7991927 TTTTTTTCATTTTTT
1 TTTTTTTCATTTTTT
7991942 CCCATTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (16 bp):
TTTTTTTCATTTTTTT
Found at i:7991934 original size:26 final size:26
Alignment explanation
Indices: 7991899--7991960 Score: 81
Period size: 26 Copynumber: 2.3 Consensus size: 26
7991889 TGAGTCTTCC
* *
7991899 TTTTTCTTTCACTTTTTTTCC-TTTTT
1 TTTTTTTTTCA-TTTTTTCCCATTTTT
7991925 TTTTTTTTTCATTTTTTCCCATTTTT
1 TTTTTTTTTCATTTTTTCCCATTTTT
7991951 TTCTTTTTTT
1 TT-TTTTTTT
7991961 TCAAGCATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 8 0.25
26 17 0.53
27 7 0.22
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (26 bp):
TTTTTTTTTCATTTTTTCCCATTTTT
Found at i:7991957 original size:24 final size:25
Alignment explanation
Indices: 7991899--7991957 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
7991889 TGAGTCTTCC
**
7991899 TTTTTC-TTTCACTTTTTTTCCTTTT
1 TTTTTCTTTTCAC-TTTTTTCCCATT
*
7991924 TTTTTTTTTTCA-TTTTTTCCCATT
1 TTTTTCTTTTCACTTTTTTCCCATT
7991948 TTTTTCTTTT
1 TTTTTCTTTT
7991958 TTTTCAAGCA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 19 0.66
25 5 0.17
26 5 0.17
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (25 bp):
TTTTTCTTTTCACTTTTTTCCCATT
Found at i:7996667 original size:38 final size:38
Alignment explanation
Indices: 7996620--7996854 Score: 129
Period size: 36 Copynumber: 6.3 Consensus size: 38
7996610 ACTGATTTTT
*
7996620 ATTATTTGTTCTCTTCTTTTTTTTAAAGAAATACTCTC
1 ATTACTTGTTCTCTTCTTTTTTTTAAAGAAATACTCTC
* *
7996658 ATTACTTGTTCT-TT-TATTTTTTTGAA-AAATATTCAT-
1 ATTACTTGTTCTCTTCT-TTTTTTTAAAGAAATACTC-TC
* * *
7996694 ATTACTCGTTTTC-TCTTTTTTTTTAGAGAAATACTAC-C
1 ATTACTTGTTCTCTTC-TTTTTTTTAAAGAAATACT-CTC
* *
7996732 ATTATTTAG-TC-C--CTTATTTTTT-AAGAAAACACTCTC
1 ATTACTT-GTTCTCTTCTT-TTTTTTAAAG-AAATACTCTC
* * * *
7996768 ATTACTTTTTTTCTTATTTTTTTTTTTATA-AAATACTCAT-
1 ATTAC--TTGTTC-TCTTCTTTTTTTTAAAGAAATACTC-TC
* ** *
7996808 ATTACTTGTTCTCTT-ATTTTTTTGGAGAAATACTATC
1 ATTACTTGTTCTCTTCTTTTTTTTAAAGAAATACTCTC
7996845 ATTACTTGTT
1 ATTACTTGTT
7996855 ATTCTAATTT
Statistics
Matches: 149, Mismatches: 25, Indels: 47
0.67 0.11 0.21
Matches are distributed among these distances:
35 5 0.03
36 46 0.31
37 41 0.28
38 33 0.22
39 2 0.01
40 12 0.08
41 7 0.05
42 3 0.02
ACGTcount: A:0.26, C:0.14, G:0.06, T:0.54
Consensus pattern (38 bp):
ATTACTTGTTCTCTTCTTTTTTTTAAAGAAATACTCTC
Found at i:7996688 original size:36 final size:36
Alignment explanation
Indices: 7996620--7996854 Score: 124
Period size: 38 Copynumber: 6.3 Consensus size: 36
7996610 ACTGATTTTT
* *
7996620 ATTATTTGTTCTCTTCT-TTTTTTTAAAGAAATACTCTC
1 ATTACTTGTTCT-TT-TATTTTTTTGAA-AAATACTCTC
*
7996658 ATTACTTGTTCTTTTATTTTTTTGAAAAATATTCAT-
1 ATTACTTGTTCTTTTATTTTTTTGAAAAATACTC-TC
* * *
7996694 ATTACTCGTTTTCTCTTT-TTTTTTAGAGAAATACTAC-C
1 ATTACT--TGTTCT-TTTATTTTTTTGAAAAATACT-CTC
* ** * *
7996732 ATTATTTAG-TCCCTTA-TTTTTTAAGAAAACACTCTC
1 ATTACTT-GTTCTTTTATTTTTTTGA-AAAATACTCTC
* * *
7996768 ATTACTTTTTTTCTTATTTTTTTTTTTATAAAATACTCAT-
1 ATTAC--TTGTTCTT-TTATTTTTTTGA-AAAATACTC-TC
* * *
7996808 ATTACTTGTTCTCTTATTTTTTTGGAGAAATACTATC
1 ATTACTTGTTCTTTTATTTTTTT-GAAAAATACTCTC
7996845 ATTACTTGTT
1 ATTACTTGTT
7996855 ATTCTAATTT
Statistics
Matches: 149, Mismatches: 29, Indels: 39
0.69 0.13 0.18
Matches are distributed among these distances:
35 9 0.06
36 29 0.19
37 38 0.26
38 46 0.31
39 6 0.04
40 20 0.13
41 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.06, T:0.54
Consensus pattern (36 bp):
ATTACTTGTTCTTTTATTTTTTTGAAAAATACTCTC
Found at i:7996792 original size:40 final size:40
Alignment explanation
Indices: 7996748--7996830 Score: 105
Period size: 40 Copynumber: 2.1 Consensus size: 40
7996738 TAGTCCCTTA
* *
7996748 TTTTTTAAGAAAACACTC-TCATTACTTTTTTTCTTATTTT
1 TTTTTTAAGAAAACACTCAT-ATTACTTGTTCTCTTATTTT
* * *
7996788 TTTTTTTATAAAATACTCATATTACTTGTTCTCTTATTTT
1 TTTTTTAAGAAAACACTCATATTACTTGTTCTCTTATTTT
7996828 TTT
1 TTT
7996831 GGAGAAATAC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.24, C:0.13, G:0.02, T:0.60
Consensus pattern (40 bp):
TTTTTTAAGAAAACACTCATATTACTTGTTCTCTTATTTT
Found at i:7996875 original size:36 final size:36
Alignment explanation
Indices: 7996797--7996875 Score: 90
Period size: 37 Copynumber: 2.2 Consensus size: 36
7996787 TTTTTTTTAT
* *
7996797 AAAATACTCATATTACTTGTTCTCTTATTTTTTTGG
1 AAAATACTCATATTACTTGTTCTCTTAATTTTTAGG
*
7996833 AGAAATACT-ATCATTACTTGTTAT-TCTAATTTTTAGG
1 A-AAATACTCAT-ATTACTTGTTCTCT-TAATTTTTAGG
7996870 AAAATA
1 AAAATA
7996876 TTTGCATTAC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
36 9 0.24
37 28 0.76
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.47
Consensus pattern (36 bp):
AAAATACTCATATTACTTGTTCTCTTAATTTTTAGG
Found at i:7996899 original size:113 final size:114
Alignment explanation
Indices: 7996669--7996900 Score: 249
Period size: 113 Copynumber: 2.0 Consensus size: 114
7996659 TTACTTGTTC
* *
7996669 TTTTATTTTTTTGAAAAATATTCATATTACTCGTTTTCTCTTTTTTTTTAGAGAAATACTACCAT
1 TTTTATTTTTTTGAAAAATACTCATATTACTC-TGTTCTCTTTTTTTTTAGAGAAATACTACCAT
* * * * * *
7996734 TATTTAGTCCCTTATTTTTTAAGAAAACACTCTCATTACTTTTTTTCTTA
65 TACTTAGTCACTTAATTTTTAAGAAAACACTCTCATTACTTATTCTCATA
* *
7996784 TTTT-TTTTTTT-ATAAAATACTCATATTACT-TGTTCTCTTATTTTTTTGGAGAAATACTATCA
1 TTTTATTTTTTTGA-AAAATACTCATATTACTCTGTTCTCTT-TTTTTTTAGAGAAATACTACCA
* * * * *
7996846 TTACTT-GTTATTCTAATTTTTAGGAAAATA-TTTGCATTACTTATTCTCATA
64 TTACTTAGTCACT-TAATTTTTAAGAAAACACTCT-CATTACTTATTCTCATA
7996897 TTTT
1 TTTT
7996901 CTTAAGGGAA
Statistics
Matches: 98, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
112 13 0.13
113 58 0.59
114 23 0.23
115 4 0.04
ACGTcount: A:0.27, C:0.13, G:0.06, T:0.54
Consensus pattern (114 bp):
TTTTATTTTTTTGAAAAATACTCATATTACTCTGTTCTCTTTTTTTTTAGAGAAATACTACCATT
ACTTAGTCACTTAATTTTTAAGAAAACACTCTCATTACTTATTCTCATA
Found at i:7996975 original size:38 final size:38
Alignment explanation
Indices: 7996931--7997025 Score: 136
Period size: 38 Copynumber: 2.5 Consensus size: 38
7996921 TTTGTTGTCT
*
7996931 TATTTTTTTTAGGAAAACACTCCCATTACTTATTCTCC
1 TATTTTTTTTAGGAAAACACTCCCATTACTTATTATCC
* * * *
7996969 TTTTTTTTTTAAGAAAATACTCCCATTACTTGTTATCC
1 TATTTTTTTTAGGAAAACACTCCCATTACTTATTATCC
*
7997007 TATTTTCTTTAGGAAAACA
1 TATTTTTTTTAGGAAAACA
7997026 ATTTCATTAC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.46
Consensus pattern (38 bp):
TATTTTTTTTAGGAAAACACTCCCATTACTTATTATCC
Found at i:7997034 original size:38 final size:37
Alignment explanation
Indices: 7996808--7997037 Score: 128
Period size: 38 Copynumber: 6.2 Consensus size: 37
7996798 AAATACTCAT
* * * *
7996808 ATTACTTGTTCTCTTATTTTTTT-GGAGAAATACTATC
1 ATTACTTGTTCTCCTATTTTTTTAGGA-AAACAATCTC
* * * * *
7996845 ATTACTTGTTATTCTA-ATTTTTAGGAAAA-TATTTGC
1 ATTACTTGTTCTCCTATTTTTTTAGGAAAACAATCT-C
* * * * *
7996881 ATTACTTATTCTCATATTTTCTTAAGGGAAAC-A-GTC
1 ATTACTTGTTCTCCTATTTT-TTTAGGAAAACAATCTC
* * * * *
7996917 ATTATTTGTTGTCTTATTTTTTTTAGGAAAACACTCCC
1 ATTACTTGTTCTCCTA-TTTTTTTAGGAAAACAATCTC
* * * * * *
7996955 ATTACTTATTCTCCTTTTTTTTTTAAGAAAATACTCCC
1 ATTACTTGTTCTCC-TATTTTTTTAGGAAAACAATCTC
* *
7996993 ATTACTTGTTATCCTATTTTCTTTAGGAAAACAATTTC
1 ATTACTTGTTCTCCTATTTT-TTTAGGAAAACAATCTC
7997031 ATTACTT
1 ATTACTT
7997038 TTTTTAAGAG
Statistics
Matches: 144, Mismatches: 39, Indels: 19
0.71 0.19 0.09
Matches are distributed among these distances:
35 2 0.01
36 43 0.30
37 28 0.19
38 70 0.49
39 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49
Consensus pattern (37 bp):
ATTACTTGTTCTCCTATTTTTTTAGGAAAACAATCTC
Found at i:7997814 original size:13 final size:13
Alignment explanation
Indices: 7997796--7997821 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7997786 TTATATTTTT
7997796 TTTGTTGAGTTTA
1 TTTGTTGAGTTTA
7997809 TTTGTTGAGTTTA
1 TTTGTTGAGTTTA
7997822 GGATTTTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.23, T:0.62
Consensus pattern (13 bp):
TTTGTTGAGTTTA
Found at i:7997979 original size:27 final size:27
Alignment explanation
Indices: 7997917--7997981 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
7997907 ATTTATTTGG
7997917 GTTTTGGTTTTATGTTTATTGAAATTT
1 GTTTTGGTTTTATGTTTATTGAAATTT
*
7997944 -TTATTGGTTTTATGTTTGTTGAAATTT
1 GTT-TTGGTTTTATGTTTATTGAAATTT
*
7997971 GTTTAGGTTTT
1 GTTTTGGTTTT
7997982 GGTTATATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 2 0.06
27 30 0.88
28 2 0.06
ACGTcount: A:0.17, C:0.00, G:0.20, T:0.63
Consensus pattern (27 bp):
GTTTTGGTTTTATGTTTATTGAAATTT
Found at i:7997984 original size:33 final size:33
Alignment explanation
Indices: 7997903--7998006 Score: 112
Period size: 33 Copynumber: 3.3 Consensus size: 33
7997893 AATTATTTGA
* *
7997903 TGAAATTTATTTGGGTTTTGGTTTTATGTTTAT
1 TGAAATTTGTTTAGGTTTTGGTTTTATGTTTAT
*
7997936 TGAAA-TT-TTTA----TTGGTTTTATGTTTGT
1 TGAAATTTGTTTAGGTTTTGGTTTTATGTTTAT
* *
7997963 TGAAATTTGTTTAGGTTTTGGTTATATATTTAT
1 TGAAATTTGTTTAGGTTTTGGTTTTATGTTTAT
*
7997996 TAAAATTTGTT
1 TGAAATTTGTT
7998007 GGTGATATGC
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
27 20 0.34
28 2 0.03
29 4 0.07
31 3 0.05
32 2 0.03
33 28 0.47
ACGTcount: A:0.22, C:0.00, G:0.18, T:0.60
Consensus pattern (33 bp):
TGAAATTTGTTTAGGTTTTGGTTTTATGTTTAT
Found at i:7998770 original size:334 final size:334
Alignment explanation
Indices: 7998155--7998801 Score: 1027
Period size: 334 Copynumber: 1.9 Consensus size: 334
7998145 TTAGGTTTTG
* * * * *
7998155 TTATATATTTATTAACTTTCAGATATGTAATATTTAGGGTTGCTTAATTTGGGGTTTTAGTGCAT
1 TTATACATTTATTAACTTTCAGATATGTAAGATTTAGGATTGCTTAATTTGGCGTTTGAGTGCAT
7998220 TAATATTTATATATATTTGTATGGATGTTTTATATTTAATATTTTCTAGATTTTAATAATAATTA
66 TAATATTTATATATATTTGTATGGATGTTTTATATTTAATATTTTCTAGATTTTAATAATAATTA
* * *
7998285 TAGAAATTAAAATTATTTATATTGATTTGAGGTTATAATTTATATATCACTAATAGCTATATGAT
131 TAGAAATTAAAATTATTCATATTGATTTGAGGTTATAACTTATATATCACTAATAGCCATATGAT
7998350 TTTGAAGTAAGTTATACATTATTAAGATTTATATTTGTTTTGAAATAATTTATATATTTGATAGT
196 TTTGAAGTAAGTTATACATTATTAAGATTTATATTTGTTTTGAAATAATTTATATATTTGATAGT
*
7998415 TTAGTGAAATTTATATATTACTAATTATTAAAATATTGTGGTTTGATTGTATTGATCAAATTAAT
261 TTAGTGAAATTTATATATTACTAATTATTAAAATATTGTGGTTTGATTATATTGATCAAATTAAT
7998480 ATAAATAAA
326 ATAAATAAA
* * * *
7998489 TTATACATTTATTAACTTTTAGATGTGTAAGATTTAGGATTGGTTAATTT-GCGTTTGATGTGTA
1 TTATACATTTATTAACTTTCAGATATGTAAGATTTAGGATTGCTTAATTTGGCGTTTGA-GTGCA
7998553 TTAATA-TT-TATATATTTGTATGGATGTTTTATATTTAATATTTTCTAGATTTTAATAATAATT
65 TTAATATTTATATATATTTGTATGGATGTTTTATATTTAATATTTTCTAGATTTTAATAATAATT
* * *
7998616 ATATAAA-TAAAATTTATTCATATTGATTTGAGGTTATAACTTATATATTACTAGTAGCCA-ATG
130 ATAGAAATTAAAA-TTATTCATATTGATTTGAGGTTATAACTTATATATCACTAATAGCCATATG
*
7998679 ATCCTTTTGAAGTAAGTTATATATTATTAAGATTTATATTTGTTTTGAAA-AAGTTTATATATTT
194 A---TTTTGAAGTAAGTTATACATTATTAAGATTTATATTTGTTTTGAAATAA-TTTATATATTT
* *
7998743 GATAGTTTAGTGAAATTTATATATTACTAGTTATTGAAATATTGTGGTTTGATTATATT
255 GATAGTTTAGTGAAATTTATATATTACTAATTATTAAAATATTGTGGTTTGATTATATT
7998802 CGATGTTCAC
Statistics
Matches: 288, Mismatches: 19, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
331 9 0.03
332 103 0.36
333 10 0.03
334 166 0.58
ACGTcount: A:0.35, C:0.04, G:0.13, T:0.49
Consensus pattern (334 bp):
TTATACATTTATTAACTTTCAGATATGTAAGATTTAGGATTGCTTAATTTGGCGTTTGAGTGCAT
TAATATTTATATATATTTGTATGGATGTTTTATATTTAATATTTTCTAGATTTTAATAATAATTA
TAGAAATTAAAATTATTCATATTGATTTGAGGTTATAACTTATATATCACTAATAGCCATATGAT
TTTGAAGTAAGTTATACATTATTAAGATTTATATTTGTTTTGAAATAATTTATATATTTGATAGT
TTAGTGAAATTTATATATTACTAATTATTAAAATATTGTGGTTTGATTATATTGATCAAATTAAT
ATAAATAAA
Found at i:8002096 original size:17 final size:17
Alignment explanation
Indices: 8002053--8002098 Score: 67
Period size: 17 Copynumber: 2.7 Consensus size: 17
8002043 AAAATTATGC
8002053 TTAAAGTTGTGAATTGT
1 TTAAAGTTGTGAATTGT
*
8002070 TTGAAA-TTGTTAATTGT
1 TT-AAAGTTGTGAATTGT
8002087 TTAAAGTTGTGA
1 TTAAAGTTGTGA
8002099 TATTTTAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 3 0.12
17 19 0.76
18 3 0.12
ACGTcount: A:0.30, C:0.00, G:0.22, T:0.48
Consensus pattern (17 bp):
TTAAAGTTGTGAATTGT
Found at i:8002664 original size:19 final size:19
Alignment explanation
Indices: 8002616--8002675 Score: 65
Period size: 15 Copynumber: 3.3 Consensus size: 19
8002606 TGGATGGATG
*
8002616 GATGCTATGGATATTTTAT
1 GATGTTATGGATATTTTAT
*
8002635 GA----ATTGATATTTTAT
1 GATGTTATGGATATTTTAT
8002650 GATGTTATGGATATTTTAT
1 GATGTTATGGATATTTTAT
8002669 AGATGTT
1 -GATGTT
8002676 TGATGAATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
15 14 0.41
19 14 0.41
20 6 0.18
ACGTcount: A:0.28, C:0.02, G:0.20, T:0.50
Consensus pattern (19 bp):
GATGTTATGGATATTTTAT
Found at i:8002975 original size:21 final size:20
Alignment explanation
Indices: 8002928--8002993 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 20
8002918 ATTTTTATGG
**
8002928 TTATTATTGATAAAATTTTA
1 TTATTATTGATGGAATTTTA
*
8002948 CTATTATTGATGGAATTTTAA
1 TTATTATTGATGGAATTTT-A
*
8002969 TTATTATTGATGG-ATTTTT
1 TTATTATTGATGGAATTTTA
8002988 TTATTA
1 TTATTA
8002994 CTGACCAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
19 6 0.15
20 21 0.52
21 13 0.32
ACGTcount: A:0.32, C:0.02, G:0.11, T:0.56
Consensus pattern (20 bp):
TTATTATTGATGGAATTTTA
Found at i:8003152 original size:25 final size:25
Alignment explanation
Indices: 8003106--8003153 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
8003096 CAATAAATTA
**
8003106 GTCGGTAATTACAGATGGATTTTTT
1 GTCGGTAATTACAGATAAATTTTTT
*
8003131 GTCGGTAATTACTGATAAATTTT
1 GTCGGTAATTACAGATAAATTTT
8003154 AAGCATTACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (25 bp):
GTCGGTAATTACAGATAAATTTTTT
Found at i:8009023 original size:5 final size:5
Alignment explanation
Indices: 8009013--8009038 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8009003 CTTTATTAGA
8009013 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
8009039 TTGCTAACGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:8010258 original size:152 final size:153
Alignment explanation
Indices: 8010044--8010350 Score: 392
Period size: 152 Copynumber: 2.0 Consensus size: 153
8010034 AAGTGTGAAC
* * * *
8010044 TCTAAAAGTATTAAAAGTGAACGACATAAATACCTCTATGAATTTTAAGAAATAATAAATTTACC
1 TCTAAAAGTATTAAAAGTGAACAACATAAATACCTCTATAAATTTTAAGAAATAACAAATTTACA
* *
8010109 TTTAAATTTCTAGCATTTTTTATTTATTTAATAAAGATTATTTGTCATTAAATATATAAC-TTTT
66 TTTAAATTTCTAGCA-TTATTATTTATTTAATAAAGATTATTTGACATTAAATATATAACTTTTT
*
8010173 ATT-AGTTAGTTATTTAAA-TTAAA
130 ATTCA-TTACTTATTTAAATTTAAA
* * *
8010196 TCTAAAAGTGTTAAATA-TGAATAACATAAATATCCT-TATAAATTTTAA-AAATTAACACATTT
1 TCTAAAAGTATTAAA-AGTGAACAACATAAATA-CCTCTATAAATTTTAAGAAA-TAACAAATTT
* * * * *
8010258 ATATTTCAATTTTTAGCATTATTATTTATTTAATAATGATTATTTGACATTAAATATATAGCTTT
63 ACATTTAAATTTCTAGCATTATTATTTATTTAATAAAGATTATTTGACATTAAATATATAACTTT
8010323 TTATTCATTACTTATTTAAATTTAAA
128 TTATTCATTACTTATTTAAATTTAAA
8010349 TC
1 TC
8010351 AATTAAAAAT
Statistics
Matches: 134, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
151 43 0.32
152 79 0.59
153 12 0.09
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (153 bp):
TCTAAAAGTATTAAAAGTGAACAACATAAATACCTCTATAAATTTTAAGAAATAACAAATTTACA
TTTAAATTTCTAGCATTATTATTTATTTAATAAAGATTATTTGACATTAAATATATAACTTTTTA
TTCATTACTTATTTAAATTTAAA
Found at i:8010842 original size:24 final size:24
Alignment explanation
Indices: 8010787--8010838 Score: 74
Period size: 23 Copynumber: 2.2 Consensus size: 24
8010777 AATTTAGATT
8010787 AATTA-AAATTAAATTTCATATAA
1 AATTATAAATTAAATTTCATATAA
8010810 AATTATAAATTAAATTATCA-A-AA
1 AATTATAAATTAAATT-TCATATAA
8010833 AATTAT
1 AATTAT
8010839 TAAAAAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 13 0.48
24 11 0.41
25 3 0.11
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (24 bp):
AATTATAAATTAAATTTCATATAA
Found at i:8013448 original size:14 final size:15
Alignment explanation
Indices: 8013429--8013458 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8013419 GTCAGGGATA
8013429 ACATAATAATA-AAT
1 ACATAATAATATAAT
8013443 ACATAATAATATAAT
1 ACATAATAATATAAT
8013458 A
1 A
8013459 GTAAATAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
ACATAATAATATAAT
Found at i:8013451 original size:22 final size:22
Alignment explanation
Indices: 8013426--8013486 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
8013416 TATGTCAGGG
*
8013426 ATAACATAATAATAAAT-ACATA
1 ATAACATAATAGTAAATAACA-A
*
8013448 ATAATATAATAGTAAATAACAA
1 ATAACATAATAGTAAATAACAA
*
8013470 ATAACTTAATAGTAAAT
1 ATAACATAATAGTAAAT
8013487 TATTTATACA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 31 0.91
23 3 0.09
ACGTcount: A:0.61, C:0.07, G:0.03, T:0.30
Consensus pattern (22 bp):
ATAACATAATAGTAAATAACAA
Found at i:8014067 original size:46 final size:45
Alignment explanation
Indices: 8013985--8014139 Score: 142
Period size: 44 Copynumber: 3.5 Consensus size: 45
8013975 ATTAAAATAA
* * * *
8013985 ATCAAT-ATAACTTAATAGT-AATCATTGATAAATTAATAGTTA-
1 ATCAATAATAATTTAATAGTAAATAAGTGATAACTTAATAGTTAT
* * *
8014027 ATCAGTGATAATTTAGTATAGTAAATTAGTGATAACTTAATAG-TAT
1 ATCAATAATAATTTA--ATAGTAAATAAGTGATAACTTAATAGTTAT
* * *
8014073 ATCAATAATAATTTAATAGTAAATAATTGATAACTTAGTAG-TAA
1 ATCAATAATAATTTAATAGTAAATAAGTGATAACTTAATAGTTAT
* *
8014117 ATTAATAATAATGTAATA-TAAAT
1 ATCAATAATAATTTAATAGTAAAT
8014140 GCATAATAAT
Statistics
Matches: 95, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
42 5 0.05
43 12 0.13
44 41 0.43
45 7 0.07
46 30 0.32
ACGTcount: A:0.48, C:0.05, G:0.10, T:0.38
Consensus pattern (45 bp):
ATCAATAATAATTTAATAGTAAATAAGTGATAACTTAATAGTTAT
Found at i:8014115 original size:22 final size:22
Alignment explanation
Indices: 8013907--8014270 Score: 121
Period size: 22 Copynumber: 16.6 Consensus size: 22
8013897 AATCATAAAC
*
8013907 ACTTAATA-TAAGTTAA-TGATA
1 ACTTAATAGTAA-ATAATTGATA
* * * *
8013928 ATTTAGTAGTAAATAATTTAGA
1 ACTTAATAGTAAATAATTGATA
* *
8013950 ACTTAGTAATAATTAATAATTGA-A
1 AC-T--TAATAGTAAATAATTGATA
* *
8013974 AATTAA-AATAAATCAA-T-ATA
1 ACTTAATAGTAAAT-AATTGATA
*
8013994 ACTTAATAGT-AATCATTGATA
1 ACTTAATAGTAAATAATTGATA
* * * *
8014015 AATTAATAGTTAATCAGTGATA
1 ACTTAATAGTAAATAATTGATA
* * *
8014037 ATTTAGTATAGTAAATTAGTGATA
1 ACTTA--ATAGTAAATAATTGATA
* *
8014061 ACTTAATAGTATATCAA-TAATA
1 ACTTAATAGTAAAT-AATTGATA
*
8014083 ATTTAATAGTAAATAATTGATA
1 ACTTAATAGTAAATAATTGATA
* *
8014105 ACTTAGTAGTAAATTAA-TAATA
1 ACTTAATAGTAAA-TAATTGATA
* *
8014127 A-TGTAATA-TAAATGCA-TAATA
1 ACT-TAATAGTAAAT-AATTGATA
*
8014148 ATTTAATAGTAAATCAA-T-ATA
1 ACTTAATAGTAAAT-AATTGATA
* * * *
8014169 ACATAATTGTAAATGCA-TAATA
1 ACTTAATAGTAAAT-AATTGATA
* * * *
8014191 GCATAGTTGTAAATTAA-TGATA
1 ACTTAATAGTAAA-TAATTGATA
** *
8014213 ACTTAATAAAAAATAAATGATA
1 ACTTAATAGTAAATAATTGATA
* * *
8014235 ATTTAATAGTTAATTATTGATA
1 ACTTAATAGTAAATAATTGATA
* *
8014257 ATTTAGTAGTAAAT
1 ACTTAATAGTAAAT
8014271 CAGGAAACTT
Statistics
Matches: 263, Mismatches: 57, Indels: 45
0.72 0.16 0.12
Matches are distributed among these distances:
19 2 0.01
20 18 0.07
21 66 0.25
22 136 0.52
23 7 0.03
24 21 0.08
25 13 0.05
ACGTcount: A:0.49, C:0.04, G:0.10, T:0.37
Consensus pattern (22 bp):
ACTTAATAGTAAATAATTGATA
Found at i:8014159 original size:43 final size:43
Alignment explanation
Indices: 8014058--8014190 Score: 135
Period size: 43 Copynumber: 3.1 Consensus size: 43
8014048 TAAATTAGTG
* * * *
8014058 ATAACTTAATAGTATATCAATAATAATTTAATAGTAAAT-AATTG
1 ATAACTTAATAGTAAATCAATAATAATATAATA-TAAATGCA-TA
* * *
8014102 ATAACTTAGTAGTAAATTAATAATAATGTAATATAAATGCATA
1 ATAACTTAATAGTAAATCAATAATAATATAATATAAATGCATA
* * *
8014145 ATAATTTAATAGTAAATCAAT-ATAACATAATTGTAAATGCATA
1 ATAACTTAATAGTAAATCAATAATAATATAA-TATAAATGCATA
8014188 ATA
1 ATA
8014191 GCATAGTTGT
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
42 7 0.09
43 38 0.51
44 30 0.40
ACGTcount: A:0.51, C:0.05, G:0.08, T:0.36
Consensus pattern (43 bp):
ATAACTTAATAGTAAATCAATAATAATATAATATAAATGCATA
Found at i:8014485 original size:22 final size:22
Alignment explanation
Indices: 8014457--8014774 Score: 103
Period size: 22 Copynumber: 14.1 Consensus size: 22
8014447 ATAATAGTAT
*
8014457 ATAGTAAATTGTTGATAATTTA
1 ATAGTAAATTATTGATAATTTA
8014479 ATAGTAAATTATTGATAATTTA
1 ATAGTAAATTATTGATAATTTA
* * * * * *
8014501 GTAGTAAATCACTAATAATGTC
1 ATAGTAAATTATTGATAATTTA
* **
8014523 ATAGTAAATCATTGATAACATA
1 ATAGTAAATTATTGATAATTTA
* *
8014545 GCT-GTAAATTAGTGATAA-TTA
1 -ATAGTAAATTATTGATAATTTA
* *
8014566 GTTTA-TAAATTAATGATAATTTA
1 --ATAGTAAATTATTGATAATTTA
* * *
8014589 ATTGTAAATTAGTTAATTATTAATA
1 ATAGTAAATTA-TTGATAATT--TA
* ** * * * *
8014614 ACTTCA-TACTAAATCATCAAAACTTC
1 A--T-AGTA--AATTATTGATAATTTA
* *
8014640 ATAATAAATTAGTTAATAACTTT-
1 ATAGTAAATTA-TTGATAA-TTTA
* *
8014663 ATAATAAATTATCT-ATAACTTA
1 ATAGTAAATTAT-TGATAATTTA
**
8014685 ATAGTAAATTATCAAT-ATTTA
1 ATAGTAAATTATTGATAATTTA
* * *
8014706 GTAGTAAATTGTTTATAATTTA
1 ATAGTAAATTATTGATAATTTA
* * *
8014728 ATAGTAAATCATTTATAACTTA
1 ATAGTAAATTATTGATAATTTA
* *
8014750 GT-GATAAATTAATGATAATTTA
1 ATAG-TAAATTATTGATAATTTA
8014772 ATA
1 ATA
8014775 TAATCAGTGA
Statistics
Matches: 216, Mismatches: 58, Indels: 43
0.68 0.18 0.14
Matches are distributed among these distances:
21 22 0.10
22 147 0.68
23 27 0.12
24 5 0.02
25 3 0.01
26 2 0.01
27 3 0.01
28 4 0.02
29 3 0.01
ACGTcount: A:0.44, C:0.06, G:0.08, T:0.41
Consensus pattern (22 bp):
ATAGTAAATTATTGATAATTTA
Found at i:8015092 original size:45 final size:46
Alignment explanation
Indices: 8015030--8015118 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 46
8015020 ATTGTAATTT
* *
8015030 ATTGATAAATTAATAGTAAATCATAAATAACTTAGTAG-TAATTCA
1 ATTGATAAATTAATAGTAAATAATAAATAACTTAATAGCTAATTCA
* * **
8015075 ATTGATAACTTAGTAGTAAATAATTGATAACTTAATAGCTAATT
1 ATTGATAAATTAATAGTAAATAATAAATAACTTAATAGCTAATT
8015119 GTTAAATTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 32 0.86
46 5 0.14
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (46 bp):
ATTGATAAATTAATAGTAAATAATAAATAACTTAATAGCTAATTCA
Found at i:8015102 original size:22 final size:22
Alignment explanation
Indices: 8015030--8015108 Score: 95
Period size: 22 Copynumber: 3.5 Consensus size: 22
8015020 ATTGTAATTT
* * *
8015030 ATTGATAAATTAATAGTAAATC
1 ATTGATAACTTAGTAGTAAATA
** *
8015052 ATAAATAACTTAGTAGTAATTCA
1 ATTGATAACTTAGTAGTAAAT-A
8015075 ATTGATAACTTAGTAGTAAATA
1 ATTGATAACTTAGTAGTAAATA
8015097 ATTGATAACTTA
1 ATTGATAACTTA
8015109 ATAGCTAATT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
22 29 0.62
23 18 0.38
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (22 bp):
ATTGATAACTTAGTAGTAAATA
Found at i:8015222 original size:21 final size:21
Alignment explanation
Indices: 8015150--8015240 Score: 69
Period size: 21 Copynumber: 4.3 Consensus size: 21
8015140 CAATGGTAAT
* *
8015150 TAGTAAATGC-ATAATAATATAA
1 TAGTAAAT-CAATGATAAT-TAG
* *
8015172 TAGTAAATCATTGA-ATTTAG
1 TAGTAAATCAATGATAATTAG
* *
8015192 TAGTAAATCACTTATAATTAG
1 TAGTAAATCAATGATAATTAG
* *
8015213 TTGTATATCAATGATAATTTAG
1 TAGTAAATCAATGATAA-TTAG
8015235 TAGTAA
1 TAGTAA
8015241 TTAATTAATC
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
20 14 0.26
21 21 0.40
22 18 0.34
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.38
Consensus pattern (21 bp):
TAGTAAATCAATGATAATTAG
Found at i:8015504 original size:22 final size:21
Alignment explanation
Indices: 8015477--8015546 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 21
8015467 TCGAATTTAT
8015477 TGATAACTTAATGATAATTCAG
1 TGATAACTTAATGATAATT-AG
* * *
8015499 TTATAATTTAATTATAATTAG
1 TGATAACTTAATGATAATTAG
*
8015520 TGATAAC--AAT-A-AATTAA
1 TGATAACTTAATGATAATTAG
8015537 TGATAACTTA
1 TGATAACTTA
8015547 TAATAAATCA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
17 12 0.30
18 1 0.03
19 4 0.10
21 7 0.17
22 16 0.40
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.40
Consensus pattern (21 bp):
TGATAACTTAATGATAATTAG
Found at i:8023170 original size:18 final size:18
Alignment explanation
Indices: 8023130--8023171 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
8023120 CTATACTTGA
* *
8023130 AAAAAAATATGAAAAATT
1 AAAAAAATAAGAAAAAAT
8023148 AAAAAAATAAGAAAAAAAT
1 AAAAAAATAAG-AAAAAAT
8023167 AAAAA
1 AAAAA
8023172 TGAAGACTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (18 bp):
AAAAAAATAAGAAAAAAT
Found at i:8024223 original size:42 final size:41
Alignment explanation
Indices: 8024161--8024426 Score: 250
Period size: 42 Copynumber: 6.3 Consensus size: 41
8024151 GATTGTCAAT
* *
8024161 GAGCAATTTACTTTCAAAAGTCATGGTTGCCTCTATTTAGAT
1 GAGCAATTTA-TTTTAAAAGTCATGGTTGCCTCTATTTAGAG
* * **
8024203 GAGCAGTTTATTGTTTAAAGTTGTGGTTGCCTCT-TCTTAGAG
1 GAGCAATTTATT-TTAAAAGTCATGGTTGCCTCTAT-TTAGAG
* *
8024245 GAGCAATTTACTTTCAAAAAGTCATGGTTACCTCTATTTAGAG
1 GAGCAATTTA-TTT-TAAAAGTCATGGTTGCCTCTATTTAGAG
* *
8024288 GAGCAATTTATTATTCAAAGTCATGGTTGCCTCT-TCTTAGAT
1 GAGCAATTTATT-TTAAAAGTCATGGTTGCCTCTAT-TTAGAG
* * * *
8024330 GAGCAATTTACTTTCAAAAAGTCATGGTTGCCTTTGTTTAGAT
1 GAGCAATTTA-TTT-TAAAAGTCATGGTTGCCTCTATTTAGAG
* * * * *
8024373 GAGCAATTTATTGTTCAAAGTCGTGGTTGCTTCTACTTATAG
1 GAGCAATTTATT-TTAAAAGTCATGGTTGCCTCTATTTAGAG
8024415 GAGC-ATTTATTT
1 GAGCAATTTATTT
8024427 CTTTAAAAGT
Statistics
Matches: 185, Mismatches: 28, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
40 1 0.01
41 11 0.06
42 101 0.55
43 70 0.38
44 2 0.01
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (41 bp):
GAGCAATTTATTTTAAAAGTCATGGTTGCCTCTATTTAGAG
Found at i:8024279 original size:43 final size:42
Alignment explanation
Indices: 8024159--8024391 Score: 260
Period size: 42 Copynumber: 5.5 Consensus size: 42
8024149 ATGATTGTCA
8024159 ATGAGCAATTTACTTTC-AAAAGTCATGGTTGCCTCTATTTAG
1 ATGAGCAATTTACTTTCAAAAAGTCATGGTTGCCTCT-TTTAG
* ** **
8024201 ATGAGCAGTTTA-TTGT-TTAAAGTTGTGGTTGCCTCTTCTTAG
1 ATGAGCAATTTACTT-TCAAAAAGTCATGGTTGCCTCTT-TTAG
* *
8024243 AGGAGCAATTTACTTTCAAAAAGTCATGGTTACCTCTATTTAG
1 ATGAGCAATTTACTTTCAAAAAGTCATGGTTGCCTCT-TTTAG
* *
8024286 AGGAGCAATTTATTATTC--AAAGTCATGGTTGCCTCTTCTTAG
1 ATGAGCAATTTACT-TTCAAAAAGTCATGGTTGCCTCTT-TTAG
*
8024328 ATGAGCAATTTACTTTCAAAAAGTCATGGTTGCCTTTGTTTAG
1 ATGAGCAATTTACTTTCAAAAAGTCATGGTTGCCTCT-TTTAG
*
8024371 ATGAGCAATTTATTGTTCAAA
1 ATGAGCAATTTACT-TTCAAA
8024392 GTCGTGGTTG
Statistics
Matches: 162, Mismatches: 17, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
41 7 0.04
42 76 0.47
43 68 0.42
44 11 0.07
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (42 bp):
ATGAGCAATTTACTTTCAAAAAGTCATGGTTGCCTCTTTTAG
Found at i:8024393 original size:127 final size:126
Alignment explanation
Indices: 8024161--8024426 Score: 301
Period size: 127 Copynumber: 2.1 Consensus size: 126
8024151 GATTGTCAAT
* * ** **
8024161 GAGCAATTTACTTTCAAAAGTCATGGTTGCCTCTATTTAGATGAGCAGTTTATTGTTTAAAGTTG
1 GAGCAATTTATTTTCAAAAGTCATGGTTGCCTCTATTTAGATGAGCAATTTATTGTAAAAAGTCA
*
8024226 TGGTTGCCTCTTCTTAGAGGAGCAATTTACTTTCAAAAAGTCATGGTTACCTCTATTTAGAG
66 TGGTTGCCTCTTCTTAGAGGAGCAATTTACTTTC-AAAAGTCATGGTTACCTCTACTTAGAG
8024288 GAGCAATTTATTATTC-AAAGTCATGGTTGCCTCT-TCTTAGATGAGCAATTTACTT-TCAAAAA
1 GAGCAATTTATT-TTCAAAAGTCATGGTTGCCTCTAT-TTAGATGAGCAATTTA-TTGT-AAAAA
* * * * * * *
8024350 GTCATGGTTGCCT-TTGTTTAGATGAGCAATTTATTGTTC-AAAGTCGTGGTTGCTTCTACTTAT
62 GTCATGGTTGCCTCTT-CTTAGAGGAGCAATTTACT-TTCAAAAGTCATGGTTACCTCTACTTAG
8024413 AG
125 AG
8024415 GAGC-ATTTATTT
1 GAGCAATTTATTT
8024427 CTTTAAAAGT
Statistics
Matches: 119, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
125 1 0.01
126 8 0.07
127 72 0.61
128 35 0.29
129 3 0.03
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (126 bp):
GAGCAATTTATTTTCAAAAGTCATGGTTGCCTCTATTTAGATGAGCAATTTATTGTAAAAAGTCA
TGGTTGCCTCTTCTTAGAGGAGCAATTTACTTTCAAAAGTCATGGTTACCTCTACTTAGAG
Found at i:8024436 original size:85 final size:85
Alignment explanation
Indices: 8024161--8024427 Score: 396
Period size: 85 Copynumber: 3.2 Consensus size: 85
8024151 GATTGTCAAT
* * *
8024161 GAGCAATTTACTTTC-AAAAGTCATGGTTGCCTCTATTTAGATGAGCAGTTTATTGTTTAAAGTT
1 GAGCAATTTACTTTCAAAAAGTCATGGTTGCCTCTATTTAGATGAGCAATTTATTGTTCAAAGTC
8024225 GTGGTTGCCTCTTCTTAGAG
66 GTGGTTGCCTCTTCTTAGAG
* * *
8024245 GAGCAATTTACTTTCAAAAAGTCATGGTTACCTCTATTTAGAGGAGCAATTTATTATTCAAAGTC
1 GAGCAATTTACTTTCAAAAAGTCATGGTTGCCTCTATTTAGATGAGCAATTTATTGTTCAAAGTC
* *
8024310 ATGGTTGCCTCTTCTTAGAT
66 GTGGTTGCCTCTTCTTAGAG
* *
8024330 GAGCAATTTACTTTCAAAAAGTCATGGTTGCCTTTGTTTAGATGAGCAATTTATTGTTCAAAGTC
1 GAGCAATTTACTTTCAAAAAGTCATGGTTGCCTCTATTTAGATGAGCAATTTATTGTTCAAAGTC
* * *
8024395 GTGGTTGCTTCTACTTATAG
66 GTGGTTGCCTCTTCTTAGAG
8024415 GAGC-ATTTA-TTTC
1 GAGCAATTTACTTTC
8024428 TTTAAAAGTT
Statistics
Matches: 164, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
83 4 0.02
84 20 0.12
85 140 0.85
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (85 bp):
GAGCAATTTACTTTCAAAAAGTCATGGTTGCCTCTATTTAGATGAGCAATTTATTGTTCAAAGTC
GTGGTTGCCTCTTCTTAGAG
Found at i:8024463 original size:42 final size:42
Alignment explanation
Indices: 8024413--8024566 Score: 218
Period size: 42 Copynumber: 3.6 Consensus size: 42
8024403 TTCTACTTAT
8024413 AGGAGCATTTATTTCTTTAAAAGTTGTGGAGCCTCTGTTTAG
1 AGGAGCATTTATTTCTTTAAAAGTTGTGGAGCCTCTGTTTAG
* * *
8024455 AAGAGCATTTATTTCTTTAAAAGTTGTTGAGCCTCTGCTTAG
1 AGGAGCATTTATTTCTTTAAAAGTTGTGGAGCCTCTGTTTAG
* * *
8024497 AGGAGCTTTGTTTATTTCTTTAAAAGTTGTGAAGCCTCTATTTAG
1 AGGAGC---ATTTATTTCTTTAAAAGTTGTGGAGCCTCTGTTTAG
*
8024542 AGGAGCATTTATTTCTTCAAAAGTT
1 AGGAGCATTTATTTCTTTAAAAGTT
8024567 ATTGAATCTC
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
42 61 0.62
45 37 0.38
ACGTcount: A:0.26, C:0.12, G:0.20, T:0.42
Consensus pattern (42 bp):
AGGAGCATTTATTTCTTTAAAAGTTGTGGAGCCTCTGTTTAG
Found at i:8024523 original size:45 final size:45
Alignment explanation
Indices: 8024420--8024690 Score: 235
Period size: 45 Copynumber: 6.2 Consensus size: 45
8024410 TATAGGAGCA
* * * *
8024420 TTTATTTCTTTAAAAGTTGTGGAGCCTCTGTTTAGAAGAGC---A
1 TTTATTTCTTTAAAAGTTGTTGAGCCTCTGATTAGAGGAGCTTTG
*
8024462 TTTATTTCTTTAAAAGTTGTTGAGCCTCTGCTTAGAGGAGCTTTG
1 TTTATTTCTTTAAAAGTTGTTGAGCCTCTGATTAGAGGAGCTTTG
*
8024507 TTTATTTCTTTAAAAGTTG-TGAAGCCTCT-ATTTAGAGGAGC---A
1 TTTATTTCTTTAAAAGTTGTTG-AGCCTCTGA-TTAGAGGAGCTTTG
* * **
8024549 TTTATTTCTTCAAAAGTTATTGAATCTCTGATTA-AGGGAGCTTTG
1 TTTATTTCTTTAAAAGTTGTTGAGCCTCTGATTAGA-GGAGCTTTG
*
8024594 TTTATTT-TTTCAAAAGTCTTGTT--GCCTCTGCTTAGAGGAGCTTTG
1 TTTATTTCTTT-AAAAG--TTGTTGAGCCTCTGATTAGAGGAGCTTTG
* * ** * *
8024639 TTT-TTATTTTTCAAAGTCATTGAGGCTCTGATTAGAAGAGCTTTG
1 TTTATT-TCTTTAAAAGTTGTTGAGCCTCTGATTAGAGGAGCTTTG
8024684 TTTATTT
1 TTTATTT
8024691 TACTCAAAGT
Statistics
Matches: 187, Mismatches: 22, Indels: 37
0.76 0.09 0.15
Matches are distributed among these distances:
41 1 0.01
42 68 0.36
43 6 0.03
44 6 0.03
45 96 0.51
46 6 0.03
47 4 0.02
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.45
Consensus pattern (45 bp):
TTTATTTCTTTAAAAGTTGTTGAGCCTCTGATTAGAGGAGCTTTG
Found at i:8024525 original size:87 final size:87
Alignment explanation
Indices: 8024420--8024690 Score: 305
Period size: 87 Copynumber: 3.1 Consensus size: 87
8024410 TATAGGAGCA
* * *
8024420 TTTATTTCTTTAAAAGTTGTGGAGCCTCTGTTTAGAAGAGCATTTATTTCTTTAAAAGTTGTTGA
1 TTTATTTCTTTAAAAGTTGTGAAGCCTCTGTTTAGAGGAGCATTTATTTCTTTAAAAGTTATTGA
*
8024485 GCCTCTGCTTAGAGGAGCTTTG
66 GCCTCTGATTAGAGGAGCTTTG
* *
8024507 TTTATTTCTTTAAAAGTTGTGAAGCCTCTATTTAGAGGAGCATTTATTTCTTCAAAAGTTATTGA
1 TTTATTTCTTTAAAAGTTGTGAAGCCTCTGTTTAGAGGAGCATTTATTTCTTTAAAAGTTATTGA
**
8024572 ATCTCTGATTA-AGGGAGCTTTG
66 GCCTCTGATTAGA-GGAGCTTTG
** * * * * * *
8024594 TTTATTT-TTTCAAAAGTCT-TGTTGCCTCTGCTTAGAGGAGCTTTGTTTTTATTTTTCAAAGTC
1 TTTATTTCTTT-AAAAGT-TGTGAAGCCTCTGTTTAGAGGAGC-AT-TTATT-TCTTTAAAAGTT
* *
8024657 ATTGAGGCTCTGATTAGAAGAGCTTTG
61 ATTGAGCCTCTGATTAGAGGAGCTTTG
8024684 TTTATTT
1 TTTATTT
8024691 TACTCAAAGT
Statistics
Matches: 156, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
86 4 0.03
87 108 0.69
88 2 0.01
89 4 0.03
90 37 0.24
91 1 0.01
ACGTcount: A:0.24, C:0.12, G:0.20, T:0.45
Consensus pattern (87 bp):
TTTATTTCTTTAAAAGTTGTGAAGCCTCTGTTTAGAGGAGCATTTATTTCTTTAAAAGTTATTGA
GCCTCTGATTAGAGGAGCTTTG
Found at i:8024589 original size:42 final size:43
Alignment explanation
Indices: 8024413--8024589 Score: 193
Period size: 42 Copynumber: 4.1 Consensus size: 43
8024403 TTCTACTTAT
* *
8024413 AGGAGCATTTATTTCTTTAAAAGTTGTGGAGCCTCTG-TTTAG
1 AGGAGCATTTATTTCTTTAAAAGTTGTTGAACCTCTGATTTAG
* * *
8024455 AAGAGCATTTATTTCTTTAAAAGTTGTTGAGCCTCTG-CTTAG
1 AGGAGCATTTATTTCTTTAAAAGTTGTTGAACCTCTGATTTAG
*
8024497 AGGAGCTTTGTTTATTTCTTTAAAAGTTG-TGAAGCCTCT-ATTTAG
1 AGGAGC---ATTTATTTCTTTAAAAGTTGTTGAA-CCTCTGATTTAG
* * * *
8024542 AGGAGCATTTATTTCTTCAAAAGTTATTGAATCTCTGATTAAG
1 AGGAGCATTTATTTCTTTAAAAGTTGTTGAACCTCTGATTTAG
8024585 -GGAGC
1 AGGAGC
8024590 TTTGTTTATT
Statistics
Matches: 116, Mismatches: 12, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
42 70 0.60
43 9 0.08
44 3 0.03
45 34 0.29
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (43 bp):
AGGAGCATTTATTTCTTTAAAAGTTGTTGAACCTCTGATTTAG
Found at i:8024698 original size:45 final size:43
Alignment explanation
Indices: 8024441--8024728 Score: 157
Period size: 45 Copynumber: 6.6 Consensus size: 43
8024431 AAAAGTTGTG
* * * * **
8024441 GAGCCTCTGTTTAGAAGAGCATTT-ATT-TCTTTAAAAGTTGTT
1 GAGCCTCTGATTAGAAGAGC-TTTGTTTATTTTTCAAAGTCATT
* * *
8024483 GAGCCTCTGCTTAGAGGAGCTTTGTTTATTTCTTTAAAAGT--TGT
1 GAGCCTCTGATTAGAAGAGCTTTGTTTA-TT-TTTCAAAGTCAT-T
* * *
8024527 GAAGCCTCT-ATTTAGAGGAGC---ATTTATTTCTTCAAAAGTTATT
1 G-AGCCTCTGA-TTAGAAGAGCTTTGTTTATTT-TTC-AAAGTCATT
** *
8024570 GAATCTCTGATTA-AGGGAGCTTTGTTTATTTTTTCAAAAGTC-TT
1 GAGCCTCTGATTAGA-AGAGCTTTGTTTA-TTTTTC-AAAGTCATT
* * *
8024614 GTTGCCTCTGCTTAGAGGAGCTTTGTTTTTATTTTTCAAAGTCATT
1 G-AGCCTCTGATTAGAAGAGCTTTG--TTTATTTTTCAAAGTCATT
*
8024660 GAGGCTCTGATTAGAAGAGCTTTGTTTATTTTACTCAAAGTCATT
1 GAGCCTCTGATTAGAAGAGCTTTGTTTATTTT--TCAAAGTCATT
* *
8024705 GAGCCT-TTACTTAGATGAGCTTTG
1 GAGCCTCTGA-TTAGAAGAGCTTTG
8024729 ATCAAAATTT
Statistics
Matches: 199, Mismatches: 22, Indels: 47
0.74 0.08 0.18
Matches are distributed among these distances:
40 1 0.01
41 8 0.04
42 42 0.21
43 12 0.06
44 9 0.05
45 110 0.55
46 13 0.07
47 4 0.02
ACGTcount: A:0.24, C:0.14, G:0.20, T:0.43
Consensus pattern (43 bp):
GAGCCTCTGATTAGAAGAGCTTTGTTTATTTTTCAAAGTCATT
Found at i:8024700 original size:90 final size:92
Alignment explanation
Indices: 8024549--8024728 Score: 217
Period size: 90 Copynumber: 2.0 Consensus size: 92
8024539 TAGAGGAGCA
* * * *
8024549 TTTATTTCTTCAAAAGTTATTGAATCTCTGATTAAGGGAGCTTTGTTTATTTTTTCAAAAGTC-T
1 TTTATTTCTTCAAAAGTCATTGAAGCTCTGATTAAGAGAGCTTTGTTTATTTTCTCAAAAGTCAT
* *
8024613 TGTTGCCTCTGCTTAGAGGAGCTTTGTT
66 TG-AGCCTCTACTTAGAGGAGCTTTGTT
*
8024641 TTTATTT-TTC-AAAGTCATTGAGGCTCTGATT-AGAAGAGCTTTGTTTATTTTACTC-AAAGTC
1 TTTATTTCTTCAAAAGTCATTGAAGCTCTGATTAAG-AGAGCTTTGTTTATTTT-CTCAAAAGTC
* *
8024702 ATTGAGCCTTTACTTAGATGAGCTTTG
64 ATTGAGCCTCTACTTAGAGGAGCTTTG
8024729 ATCAAAATTT
Statistics
Matches: 76, Mismatches: 9, Indels: 8
0.82 0.10 0.09
Matches are distributed among these distances:
89 2 0.03
90 59 0.78
91 8 0.11
92 7 0.09
ACGTcount: A:0.23, C:0.13, G:0.18, T:0.45
Consensus pattern (92 bp):
TTTATTTCTTCAAAAGTCATTGAAGCTCTGATTAAGAGAGCTTTGTTTATTTTCTCAAAAGTCAT
TGAGCCTCTACTTAGAGGAGCTTTGTT
Done.