Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 43 of 100
Found at i:8024979 original size:26 final size:25
Alignment explanation
Indices: 8024912--8025007 Score: 113
Period size: 26 Copynumber: 3.7 Consensus size: 25
8024902 CAATATGGCC
8024912 TATTTTTTTT-TTTATCTATTAATA
1 TATTTTTTTTATTTATCTATTAATA
* * *
8024936 TATATATTTATTACTTATCCATTAATA
1 TAT-T-TTTTTTATTTATCTATTAATA
*
8024963 TATTTTTTATTATTTATCTATTAATG
1 TATTTTTT-TTATTTATCTATTAATA
8024989 TATTTTTTTATATTTATCT
1 TATTTTTTT-TATTTATCT
8025008 TTTTTTTTTG
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
24 3 0.05
25 5 0.08
26 37 0.62
27 15 0.25
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.65
Consensus pattern (25 bp):
TATTTTTTTTATTTATCTATTAATA
Found at i:8025846 original size:8 final size:7
Alignment explanation
Indices: 8025819--8025867 Score: 66
Period size: 7 Copynumber: 7.0 Consensus size: 7
8025809 AATTATTTGA
8025819 TATTCTTT
1 TATT-TTT
8025827 TA-TTTT
1 TATTTTT
8025833 TA-TTTT
1 TATTTTT
8025839 TATTTTT
1 TATTTTT
8025846 TATTTTT
1 TATTTTT
8025853 TATTTTTT
1 TA-TTTTT
8025861 TATTTTT
1 TATTTTT
8025868 CTTTCTTTTC
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
6 11 0.28
7 19 0.49
8 9 0.23
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.84
Consensus pattern (7 bp):
TATTTTT
Found at i:8025852 original size:20 final size:20
Alignment explanation
Indices: 8025819--8025859 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
8025809 AATTATTTGA
8025819 TATTCTTTTATTTTTATTTT
1 TATTCTTTTATTTTTATTTT
8025839 TATT-TTTTATTTTTTATTTT
1 TATTCTTTTA-TTTTTATTTT
8025859 T
1 T
8025860 TTATTTTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (20 bp):
TATTCTTTTATTTTTATTTT
Found at i:8025867 original size:6 final size:6
Alignment explanation
Indices: 8025824--8025859 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
8025814 TTTGATATTC
8025824 TTTTAT TTTTAT TTTTATT TTTTATT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTA-T TTTTA-T TTTTAT TTTT
8025860 TTATTTTTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 16 0.55
7 13 0.45
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTAT
Found at i:8026179 original size:60 final size:59
Alignment explanation
Indices: 8025882--8026388 Score: 440
Period size: 60 Copynumber: 8.3 Consensus size: 59
8025872 CTTTTCAATG
* * * ** ** *
8025882 ATTTTTC-TAAAA-TAAAATTTTAAAAAAAAAAATTTTTTGGGAAAGTTAAAAGTATCA
1 ATTTTTCTTAAAATTAAAATTTCAAAAAAATATATTTTGAGAAAAAGTTGAAAGTATCA
* * *
8025939 ATTTTCCTTGAAAA-TAGAATTTCTAAAAAATAT-TTTTGA-AAAAAGTTGAAAGTATCA
1 ATTTTTCTT-AAAATTAAAATTTCAAAAAAATATATTTTGAGAAAAAGTTGAAAGTATCA
** * *
8025996 ATTTTTCTTGAAAA-TAATTCTTTTTTTAAAAAAATAT-TTTTAAGAAAAAGTTGAAAGTATCA
1 ATTTTTCTT-AAAATTAA----AATTTCAAAAAAATATATTTTGAGAAAAAGTTGAAAGTATCA
** * * *
8026058 A-TTTTCTTTAAAATTAAAATTAAAAAAAAAAACATTTTGAG-GAAAGTTGAAAGTATCA
1 ATTTTTC-TTAAAATTAAAATTTCAAAAAAATATATTTTGAGAAAAAGTTGAAAGTATCA
* * *
8026116 ATTTTTCTTGAAATTAAAATTTCAAAACAAATATATTTTGAGAAAAAGTTGAAAGTGTTA
1 ATTTTTCTTAAAATTAAAATTTCAAAA-AAATATATTTTGAGAAAAAGTTGAAAGTATCA
* *
8026176 ATTTTTCTTGAAATTAAAATTTCAGAAAAAATATATTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTTCTTAAAATTAAAATTTCA-AAAAAATATATTTTGAGAAAAAGTTGAAAGTATCA
*
8026236 ATTTTTCTTAAAAATAAAATTTCTAACATAAAATTTTCTAAAAATACATTTT-AGAAAAAAGTTG
1 ATTTTTCTTAAAATTAAAATTTC-AA-A-AAAA-----T----AT--ATTTTGAG-AAAAAGTTG
8026300 AAAGTATCA
51 AAAGTATCA
* * *
8026309 ATTTTTTTTAAAATTAAAATTTCAAAAATATATATATTTTAAGAAAAAGTTGAAAATATCA
1 ATTTTTCTTAAAATTAAAATTTCAAAAA-A-ATATATTTTGAGAAAAAGTTGAAAGTATCA
*
8026370 ATTTTTCTTAAAATAAAAA
1 ATTTTTCTTAAAATTAAAA
8026389 CTTCTAAATG
Statistics
Matches: 373, Mismatches: 45, Indels: 60
0.78 0.09 0.13
Matches are distributed among these distances:
57 36 0.10
58 49 0.13
59 41 0.11
60 89 0.24
61 70 0.19
62 30 0.08
63 2 0.01
67 2 0.01
70 2 0.01
71 4 0.01
72 5 0.01
73 43 0.12
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (59 bp):
ATTTTTCTTAAAATTAAAATTTCAAAAAAATATATTTTGAGAAAAAGTTGAAAGTATCA
Found at i:8026287 original size:133 final size:133
Alignment explanation
Indices: 8026144--8026387 Score: 368
Period size: 133 Copynumber: 1.8 Consensus size: 133
8026134 ATTTCAAAAC
* * * *
8026144 AAATATATTTT-GAGAAAAAGTTGAAAGTGTTAATTTTTCTTGAAATTAAAATTTCAGAAAA-A-
1 AAATACATTTTAGA-AAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTTCA-AAAATAT
* * *
8026206 ATATATTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCTAACATAAAATT
64 ATATATTTTAAGAAAAAGTTGAAAATATCAATTTTTCTT-AAAATAAAATTTCTAACATAAAATT
8026271 TTCTAA
128 TTCTAA
*
8026277 AAATACATTTTAGAAAAAAGTTGAAAGTATCAATTTTTTTTAAAATTAAAATTTCAAAAATATAT
1 AAATACATTTTAGAAAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTTCAAAAATATAT
8026342 ATATTTTAAGAAAAAGTTGAAAATATCAATTTTTCTTAAAATAAAA
66 ATATTTTAAGAAAAAGTTGAAAATATCAATTTTTCTTAAAATAAAA
8026388 ACTTCTAAAT
Statistics
Matches: 100, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
132 4 0.04
133 58 0.58
134 38 0.38
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (133 bp):
AAATACATTTTAGAAAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAATTTCAAAAATATAT
ATATTTTAAGAAAAAGTTGAAAATATCAATTTTTCTTAAAATAAAATTTCTAACATAAAATTTTC
TAA
Found at i:8026517 original size:5 final size:5
Alignment explanation
Indices: 8026509--8026551 Score: 61
Period size: 5 Copynumber: 8.8 Consensus size: 5
8026499 TTCTTCTCTT
* *
8026509 TTTTG TTTTA TTTTA TTTTA TTTTA TTTTA TTTT- TTTAA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
8026552 TTTAATGTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
4 3 0.09
5 31 0.91
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:8043211 original size:8 final size:8
Alignment explanation
Indices: 8043200--8043226 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
8043190 TAAAAAGTAA
8043200 AAAATATT
1 AAAATATT
8043208 AAAATATT
1 AAAATATT
8043216 AAAATATT
1 AAAATATT
8043224 AAA
1 AAA
8043227 TAATGTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATATT
Found at i:8043278 original size:16 final size:15
Alignment explanation
Indices: 8043236--8043280 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
8043226 ATAATGTTTT
*
8043236 TATAAAATATATAAA
1 TATAAAATAAATAAA
*
8043251 TATAAAATTAAATAAT
1 TATAAAA-TAAATAAA
8043267 TAATAAAATAAATA
1 T-ATAAAATAAATA
8043281 TTATATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 7 0.27
16 13 0.50
17 6 0.23
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TATAAAATAAATAAA
Found at i:8043855 original size:49 final size:46
Alignment explanation
Indices: 8043746--8043856 Score: 105
Period size: 49 Copynumber: 2.3 Consensus size: 46
8043736 TTTATCTAAT
* * *
8043746 GAAAATAAAATTAAAAACTAAATAAAAAAGTAAAAAAAATAAATTTA
1 GAAAA-AAAAATAAAAACAAAACAAAAAAGTAAAAAAAATAAATTTA
* * *
8043793 GTAAAAATTAAAATAAAAACAAAACAAAAAATTTCAAAAAAATAGACTTTTA
1 G-AAAAA--AAAATAAAAACAAAACAAAAAA-GTAAAAAAAATA-A-ATTTA
8043845 GAAAAAAAAATA
1 GAAAAAAAAATA
8043857 GTGTCATGTG
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
47 2 0.04
48 4 0.08
49 25 0.48
50 10 0.19
51 6 0.12
52 5 0.10
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.21
Consensus pattern (46 bp):
GAAAAAAAAATAAAAACAAAACAAAAAAGTAAAAAAAATAAATTTA
Found at i:8044838 original size:81 final size:83
Alignment explanation
Indices: 8044744--8044901 Score: 241
Period size: 82 Copynumber: 1.9 Consensus size: 83
8044734 TCTCTTGCAA
*
8044744 GTATTACACTAAAATTTTAACATTTGT-T-AACAATCATATAATTTGTTGATAAAATATTAAA-T
1 GTATTACACTAAAATTTTAACATTT-TATGAACAATCATATAATTTATTGATAAAATATTAAATT
*
8044806 TTTATTTTTAAATAATCTT
65 TTTATTTTCAAATAATCTT
* * *
8044825 GTATTACATTAAAATTTTAATATTTTATGGACAATCATATAATTTATTGATAAAATATTAAATTT
1 GTATTACACTAAAATTTTAACATTTTATGAACAATCATATAATTTATTGATAAAATATTAAATTT
8044890 TTATTTTCAAAT
66 TTATTTTCAAAT
8044902 GATCATAATT
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
80 1 0.01
81 24 0.35
82 31 0.45
83 13 0.19
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.47
Consensus pattern (83 bp):
GTATTACACTAAAATTTTAACATTTTATGAACAATCATATAATTTATTGATAAAATATTAAATTT
TTATTTTCAAATAATCTT
Found at i:8044892 original size:41 final size:41
Alignment explanation
Indices: 8044773--8044893 Score: 99
Period size: 41 Copynumber: 3.0 Consensus size: 41
8044763 ACATTTGTTA
* * **
8044773 ACAATCATATAATTTGTTGATAAAATATTAAATTTTATTTTT
1 ACAATCATATAATTTATTGATAAAATATTAAATTTT-TATGG
* * *
8044815 A-AAT-A-AT-CTTGTATTACATTAAAAT-TTTAATATTTTATGG
1 ACAATCATATAATT-TATT-GA-TAAAATATTAAAT-TTTTATGG
8044855 ACAATCATATAATTTATTGATAAAATATTAAATTTTTAT
1 ACAATCATATAATTTATTGATAAAATATTAAATTTTTAT
8044894 TTTCAAATGA
Statistics
Matches: 60, Mismatches: 10, Indels: 19
0.67 0.11 0.21
Matches are distributed among these distances:
38 2 0.03
39 5 0.08
40 10 0.17
41 27 0.45
42 8 0.13
43 6 0.10
44 2 0.03
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (41 bp):
ACAATCATATAATTTATTGATAAAATATTAAATTTTTATGG
Found at i:8045784 original size:2 final size:2
Alignment explanation
Indices: 8045777--8045807 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8045767 CATTTCGTTT
*
8045777 TA TA TA TA TA TA CA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8045808 TCACATATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8046396 original size:12 final size:12
Alignment explanation
Indices: 8046379--8046408 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8046369 TTTTTTAATG
8046379 ATAAAAAAAAAT
1 ATAAAAAAAAAT
*
8046391 ATAAAACAAAAT
1 ATAAAAAAAAAT
8046403 ATAAAA
1 ATAAAA
8046409 TGAAAAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (12 bp):
ATAAAAAAAAAT
Found at i:8049804 original size:21 final size:22
Alignment explanation
Indices: 8049762--8049805 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
8049752 TGTTTAAATT
*
8049762 TTATTTTGAATAAAAAGGATTA
1 TTATTTTGAATAAAAAAGATTA
*
8049784 TTATTTT-AATAAAAAATATTA
1 TTATTTTGAATAAAAAAGATTA
8049805 T
1 T
8049806 CAAATAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (22 bp):
TTATTTTGAATAAAAAAGATTA
Found at i:8061030 original size:18 final size:18
Alignment explanation
Indices: 8061007--8061044 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8060997 TTTTTATTTG
8061007 ATTGATAATCTTGATGGT
1 ATTGATAATCTTGATGGT
* *
8061025 ATTGATGATTTTGATGGT
1 ATTGATAATCTTGATGGT
8061043 AT
1 AT
8061045 GAACAAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.03, G:0.24, T:0.47
Consensus pattern (18 bp):
ATTGATAATCTTGATGGT
Found at i:8063122 original size:30 final size:31
Alignment explanation
Indices: 8063067--8063137 Score: 99
Period size: 30 Copynumber: 2.3 Consensus size: 31
8063057 AATAAATGGC
* *
8063067 ATCAAAGTTATGGTGATACCTAACAAGTGGT
1 ATCAAAGCTATCGTGATACCTAACAAGTGGT
* *
8063098 ATCAGAGCTATCGTGATTCC-AACAAGTGGT
1 ATCAAAGCTATCGTGATACCTAACAAGTGGT
8063128 ATCAAAGCTA
1 ATCAAAGCTA
8063138 AAAATTTGAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
30 19 0.54
31 16 0.46
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (31 bp):
ATCAAAGCTATCGTGATACCTAACAAGTGGT
Found at i:8063498 original size:52 final size:52
Alignment explanation
Indices: 8063416--8063520 Score: 142
Period size: 52 Copynumber: 2.0 Consensus size: 52
8063406 TGGATAAAAA
* *
8063416 GACTTGTAAAAGAATAATTCTAAGAGGAAAGAAATTTTTAATAGGCAAGTTT
1 GACTTGTAAAAGAAAAATTCTAAGAAGAAAGAAATTTTTAATAGGCAAGTTT
**
8063468 GACTTGTAGAAA-AAAAATTCTATA-AAGAAAGTGATTTTTAATAGGCAAGTTT
1 GACTTGTA-AAAGAAAAATTCTA-AGAAGAAAGAAATTTTTAATAGGCAAGTTT
8063520 G
1 G
8063521 TATGCTTATA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
52 43 0.91
53 4 0.09
ACGTcount: A:0.44, C:0.06, G:0.19, T:0.31
Consensus pattern (52 bp):
GACTTGTAAAAGAAAAATTCTAAGAAGAAAGAAATTTTTAATAGGCAAGTTT
Found at i:8065097 original size:15 final size:15
Alignment explanation
Indices: 8065077--8065126 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
8065067 AAAGAATAGC
8065077 AATTTTATTTACCTT
1 AATTTTATTTACCTT
* **
8065092 AATTTT-TTAAAATT
1 AATTTTATTTACCTT
8065106 -ATATTTATTTACCTT
1 AAT-TTTATTTACCTT
8065121 AATTTT
1 AATTTT
8065127 TTAAAATTAT
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
13 2 0.08
14 8 0.31
15 14 0.54
16 2 0.08
ACGTcount: A:0.32, C:0.08, G:0.00, T:0.60
Consensus pattern (15 bp):
AATTTTATTTACCTT
Found at i:8065113 original size:29 final size:29
Alignment explanation
Indices: 8065080--8065138 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
8065070 GAATAGCAAT
8065080 TTTATTTACCTTAATTTTTTAAAATTATA
1 TTTATTTACCTTAATTTTTTAAAATTATA
8065109 TTTATTTACCTTAATTTTTTAAAATTATA
1 TTTATTTACCTTAATTTTTTAAAATTATA
8065138 T
1 T
8065139 GATATTCTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (29 bp):
TTTATTTACCTTAATTTTTTAAAATTATA
Found at i:8069829 original size:22 final size:22
Alignment explanation
Indices: 8069801--8069854 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
8069791 CTGACTCCAA
*
8069801 TTTTTTTTTCTTTTTGACTTTT
1 TTTTTTTTTCTTTTTGAATTTT
***
8069823 TTTTTTTAGGTTTTTGAATTTT
1 TTTTTTTTTCTTTTTGAATTTT
8069845 TTCTTTTTTT
1 TT-TTTTTTT
8069855 ATATTTAATA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.07, C:0.06, G:0.07, T:0.80
Consensus pattern (22 bp):
TTTTTTTTTCTTTTTGAATTTT
Found at i:8070547 original size:15 final size:15
Alignment explanation
Indices: 8070527--8070559 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8070517 TTTTTTTTCT
8070527 TTTTTTTTCTTTAAA
1 TTTTTTTTCTTTAAA
*
8070542 TTTTTTTTCTTTTAA
1 TTTTTTTTCTTTAAA
8070557 TTT
1 TTT
8070560 AGATAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTTTTCTTTAAA
Found at i:8082226 original size:308 final size:308
Alignment explanation
Indices: 8081743--8082835 Score: 1832
Period size: 308 Copynumber: 3.5 Consensus size: 308
8081733 TTTCTTTTTT
* * * * *
8081743 TTTTTTCTTCTTTCTAATAGATTCTTTTATGAGGGCAGGCTGAGCTAGAGGAATCCAAAAACCAA
1 TTTTTTCTTGTTTCTAATGGATTCTTTTATTAGGGCAGGCTGACCTAGAGGAATCCAATAACCAA
* * * *
8081808 G-AATGTGCAAGTTTGCAATCTGCTTTGCAGAAGATGCAACTTGAGTTTCAGGAAACAAAAGAGT
66 GAAAT-TCCAAGGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGGAAACAAAAGAGT
* * *
8081872 TGCTAATCAAGGAATGTGAAGATGCAAAGAAAACTGCTGATGAATTGATGAATAAACTTACTGCT
130 TGCTAATCAAGGAACGTGAAGCTGCAAAGAACACTGCTGATGAATTGATGAATAAACTTACTGCT
* * * * *
8081937 GAAAATGAACAACTGAAGGTACTGTTAGACATTTGTTGCAAAAAAGGATAACAGCCACTTGGAGA
195 GAAAATGAACAGCTGAAGGTATTGTTAGACATTTGTTGCAAAAAAGGATAATAACCACTAGGAGA
*
8082002 ATTATATATTATCCTTTAAATCTACTTTGTAAATGGTAGTGCAATTTGG
260 ATTATATATTATCCTTTAAATCTACTTTGTAAATGGTAATGCAATTTGG
8082051 TTTTTTCTTGTTTCTAATGGATTCTTTTATTAGGGCAGGCTGACCTAGAGGAATCCAATAACCAA
1 TTTTTTCTTGTTTCTAATGGATTCTTTTATTAGGGCAGGCTGACCTAGAGGAATCCAATAACCAA
8082116 GAAATTCCAAGGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGGAAACAAAAGAGTT
66 GAAATTCCAAGGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGGAAACAAAAGAGTT
* *
8082181 GCTAATCAAGGAACGTGGAGCTGCAAAGGACACTGCTGATGAATTGATGAATAAACTTACTGCTG
131 GCTAATCAAGGAACGTGAAGCTGCAAAGAACACTGCTGATGAATTGATGAATAAACTTACTGCTG
*
8082246 AAAATGAACAGCTGAAGGTATTGTTAGACATTTGTTGCAAAAAAGGTTAATAACCACTAGGAGAA
196 AAAATGAACAGCTGAAGGTATTGTTAGACATTTGTTGCAAAAAAGGATAATAACCACTAGGAGAA
* *
8082311 TTAT-TAATTATCCTTTAAAATCTATTTTGTAAATGTTAATGCAATTT-G
261 TTATAT-ATTATCCTTT-AAATCTACTTTGTAAATGGTAATGCAATTTGG
*
8082359 TTTTTTGTTGTTTCTAATGGATTCTTTTATTAGGGCAGGCTGACCTAGAGGAATCCAATAACCAA
1 TTTTTTCTTGTTTCTAATGGATTCTTTTATTAGGGCAGGCTGACCTAGAGGAATCCAATAACCAA
8082424 GAAATTCCAAGGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGGAAACAAAAGAGTT
66 GAAATTCCAAGGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGGAAACAAAAGAGTT
* *
8082489 GCTAATCAAGGAACGTGAATCTGCAAAGGACACTGCTGATGAATTGATGAATAAACTTACTGCTG
131 GCTAATCAAGGAACGTGAAGCTGCAAAGAACACTGCTGATGAATTGATGAATAAACTTACTGCTG
*
8082554 AAAATGAACAGCTGAAGGTATTGTTAGACATTTGTTGCAAAAAAGGATAATAACCACGAGGAGAA
196 AAAATGAACAGCTGAAGGTATTGTTAGACATTTGTTGCAAAAAAGGATAATAACCACTAGGAGAA
8082619 TTATATATTATCCTTTAAATCTACTTTGTAAATGGTAATGCAATTTGG
261 TTATATATTATCCTTTAAATCTACTTTGTAAATGGTAATGCAATTTGG
* * * *
8082667 TTTTTTCTTGTTTGTAATGGATTCTTTTATTAAGGCAGGCTGACCTAGAGAAATCCAATAACCAT
1 TTTTTTCTTGTTTCTAATGGATTCTTTTATTAGGGCAGGCTGACCTAGAGGAATCCAATAACCAA
*
8082732 GAAATTCCAATGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGGAAACAAAAGAGTT
66 GAAATTCCAAGGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGGAAACAAAAGAGTT
* *
8082797 GCTGATCAAGGAACGTGAAGCTGCAAAGAACACAGCTGA
131 GCTAATCAAGGAACGTGAAGCTGCAAAGAACACTGCTGA
8082836 ACAAGTTCCT
Statistics
Matches: 740, Mismatches: 40, Indels: 10
0.94 0.05 0.01
Matches are distributed among these distances:
307 29 0.04
308 680 0.92
309 31 0.04
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.30
Consensus pattern (308 bp):
TTTTTTCTTGTTTCTAATGGATTCTTTTATTAGGGCAGGCTGACCTAGAGGAATCCAATAACCAA
GAAATTCCAAGGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGGAAACAAAAGAGTT
GCTAATCAAGGAACGTGAAGCTGCAAAGAACACTGCTGATGAATTGATGAATAAACTTACTGCTG
AAAATGAACAGCTGAAGGTATTGTTAGACATTTGTTGCAAAAAAGGATAATAACCACTAGGAGAA
TTATATATTATCCTTTAAATCTACTTTGTAAATGGTAATGCAATTTGG
Found at i:8083161 original size:348 final size:347
Alignment explanation
Indices: 8082525--8083632 Score: 1709
Period size: 347 Copynumber: 3.2 Consensus size: 347
8082515 AGGACACTGC
*
8082525 TGATGAATTGATGAATAAACTTACTGCTGAAAATGAACAGCTGAAGGTATTGTTAGACATTTGTT
1 TGATGAATTGATGAATAAACTTACCGCTGAAAATGAACAGCTGAAGGTATTGTTAGACATTTGTT
* * * * *
8082590 -GCAAAAAAGGATAATAACCACGAGGAGAATTATATATTATCCTTTAAATCTACTTTGTAAATGG
66 GGC-AAAAAGGATAACAACCCCTAGGAGAATTATATATTATCTTTTAAATCTACTTTGTAAATTG
* * * * *
8082654 TAATGCAATTTGGTTTTTTCTTGTTTGTAATGGATTCTTTTATTAAGGCAGGCTGACCTAGAGAA
130 TAGTGCAATTTGATTTTTTCTTGTTTCTAATGGATTCTTTTATTAGGGCAGGCTGACCTAGAGGA
* * *
8082719 ATCCAATAACCATGAAATTCCAATGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGG
195 ATCCAAAAACCAAGAAATTCCAAGGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGG
8082784 AAACAAAAGAGTTGCTGATCAAGGAACGTGAAGCTGCAAAGAACACAGCTGAACAAGTTCCTGTC
260 AAACAAAAGAGTTGCTGATCAAGGAACGTGAAGCTGCAAAGAACACAGCTGAACAAGTTCCTGTC
* * *
8082849 AGTCAGGAGGCCCCTGTTATTAA
325 ACTCAGGAGGTCCCTGTTATTGA
* *
8082872 TGATGAATTGATGAATAAACTTACCGCTGAAAATGAACAGCTGAAGGTATTATTAGACATTTCTT
1 TGATGAATTGATGAATAAACTTACCGCTGAAAATGAACAGCTGAAGGTATTGTTAGACATTTGTT
* * * *
8082937 GGCAAAAAGGATAACAGCCCCTAGGAGAATTATATATTATCTTTTAACTCTAATTTTTAAATTGT
66 GGCAAAAAGGATAACAACCCCTAGGAGAATTATATATTATCTTTTAAATCTACTTTGTAAATTGT
* *
8083002 AGTGCAATTTGTTTTTTTTCTTGTTTCTAATGTATTCTTTTATTAGGGCAGGCTGACCTAGAGGA
131 AGTGCAATTTG-ATTTTTTCTTGTTTCTAATGGATTCTTTTATTAGGGCAGGCTGACCTAGAGGA
* **
8083067 ATCCAAAAACCAAGAAATTCCAAGGTTGCAATCTGCTTTGCACAAGATGCAACTTGAGTTAAAGG
195 ATCCAAAAACCAAGAAATTCCAAGGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGG
8083132 AAACAAAAGAGTTGCTGATCAAGGAACGTGAAGCTGCAAAGAACACAGCTGAACAAG-TCCTTGT
260 AAACAAAAGAGTTGCTGATCAAGGAACGTGAAGCTGCAAAGAACACAGCTGAACAAGTTCC-TGT
* * *
8083196 CACACAGGAGGTCCCTCTAATTGA
324 CACTCAGGAGGTCCCTGTTATTGA
* * * *
8083220 TGATGGATTGATGAATAAACTTACCGCGGAAAATGGACAGCAGAAGGTATTGTTAGAC-TATTGT
1 TGATGAATTGATGAATAAACTTACCGCTGAAAATGAACAGCTGAAGGTATTGTTAGACAT-TTGT
* *
8083284 TGGCAAAAAGGATAACAATCCCTAGGAGAATTATATATTATCTTTTAAATCTACTTAGTAAATTG
65 TGGCAAAAAGGATAACAACCCCTAGGAGAATTATATATTATCTTTTAAATCTACTTTGTAAATTG
* *
8083349 TAGTGCAATTTGATTTTTTCTTGTTTCTAATGGATTCTTTTATTCGGTCAGGCTGACCTAGAGGA
130 TAGTGCAATTTGATTTTTTCTTGTTTCTAATGGATTCTTTTATTAGGGCAGGCTGACCTAGAGGA
* * *
8083414 ATCCAAAAACCAAGAAATTGCAAGGTTGCAATCTGCTTTGGACAAGATACAACTTGAGTTTCAGG
195 ATCCAAAAACCAAGAAATTCCAAGGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGG
* * *
8083479 AAACAAAAGAGTTGCTAATCAAGGAACATGAAGCTGCAAAGAACACTGCTGAACAAGTTCCTGTC
260 AAACAAAAGAGTTGCTGATCAAGGAACGTGAAGCTGCAAAGAACACAGCTGAACAAGTTCCTGTC
* *
8083544 ATTCAGGAGGTCCCTGTTAATGA
325 ACTCAGGAGGTCCCTGTTATTGA
* * *
8083567 TGATGAATTGATGAATAAACTTACTGCCGAAAATGAACAGCTGAAGGTATTGTTAGACACTTGTT
1 TGATGAATTGATGAATAAACTTACCGCTGAAAATGAACAGCTGAAGGTATTGTTAGACATTTGTT
8083632 G
66 G
8083633 CTTCTGCATA
Statistics
Matches: 690, Mismatches: 65, Indels: 12
0.90 0.08 0.02
Matches are distributed among these distances:
347 373 0.54
348 317 0.46
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.30
Consensus pattern (347 bp):
TGATGAATTGATGAATAAACTTACCGCTGAAAATGAACAGCTGAAGGTATTGTTAGACATTTGTT
GGCAAAAAGGATAACAACCCCTAGGAGAATTATATATTATCTTTTAAATCTACTTTGTAAATTGT
AGTGCAATTTGATTTTTTCTTGTTTCTAATGGATTCTTTTATTAGGGCAGGCTGACCTAGAGGAA
TCCAAAAACCAAGAAATTCCAAGGTTGCAATCTGCTTTGAACAAGATGCAACTTGAGTTTCAGGA
AACAAAAGAGTTGCTGATCAAGGAACGTGAAGCTGCAAAGAACACAGCTGAACAAGTTCCTGTCA
CTCAGGAGGTCCCTGTTATTGA
Found at i:8093656 original size:23 final size:23
Alignment explanation
Indices: 8093626--8093670 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
8093616 AAAATTATAG
8093626 TATTCGGTTTAAATTAAATTTTT
1 TATTCGGTTTAAATTAAATTTTT
*
8093649 TATTCGGTTTGAATTAAATTTT
1 TATTCGGTTTAAATTAAATTTT
8093671 AATATTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.04, G:0.11, T:0.56
Consensus pattern (23 bp):
TATTCGGTTTAAATTAAATTTTT
Found at i:8093686 original size:2 final size:2
Alignment explanation
Indices: 8093679--8093706 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8093669 TTAATATTAA
8093679 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8093707 TAGATTTGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8096966 original size:27 final size:27
Alignment explanation
Indices: 8096936--8096991 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
8096926 AAGATAACTT
*
8096936 AAATTTTTTTCTTCAATTAATTTCTAA
1 AAATTGTTTTCTTCAATTAATTTCTAA
8096963 AAATTGTTTTCTTCAATTAATTTCTAA
1 AAATTGTTTTCTTCAATTAATTTCTAA
8096990 AA
1 AA
8096992 CAATTAGGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.52
Consensus pattern (27 bp):
AAATTGTTTTCTTCAATTAATTTCTAA
Found at i:8100872 original size:21 final size:19
Alignment explanation
Indices: 8100848--8100893 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
8100838 ACCAAACTTG
*
8100848 AATTTTTCACGTGTTTTTTTC
1 AATTTTTCA--TGTGTTTTTC
*
8100869 AATTTTTGATGTGTTTTTC
1 AATTTTTCATGTGTTTTTC
8100888 AATTTT
1 AATTTT
8100894 CGAGGAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 15 0.65
21 8 0.35
ACGTcount: A:0.17, C:0.09, G:0.11, T:0.63
Consensus pattern (19 bp):
AATTTTTCATGTGTTTTTC
Found at i:8100959 original size:22 final size:20
Alignment explanation
Indices: 8100927--8100966 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
8100917 GGGATTACTA
*
8100927 GAGAAAGAAGAAGAGAAAAGGG
1 GAGAAAAAAG-AGA-AAAAGGG
8100949 GAGAAAAAAGAGAAAAAG
1 GAGAAAAAAGAGAAAAAG
8100967 AAAAAAGAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 3 0.18
22 9 0.53
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (20 bp):
GAGAAAAAAGAGAAAAAGGG
Found at i:8101912 original size:53 final size:53
Alignment explanation
Indices: 8101836--8102044 Score: 181
Period size: 53 Copynumber: 3.9 Consensus size: 53
8101826 ATTATTTTCT
* *
8101836 TTTCCAAAAA-AAAA-ATTTCTAAATAGGCCAAAATGGTGGAAAATTTAAAAA
1 TTTCAAAAAAGAAAATATTTCTAAATAGGCCTAAATGGTGGAAAATTTAAAAA
* * *
8101887 TTTCAAAAAAGAAAATATTTCTAAATTGACCTAAATGGTGGAAATTTTAAAAA
1 TTTCAAAAAAGAAAATATTTCTAAATAGGCCTAAATGGTGGAAAATTTAAAAA
*** * * *
8101940 TAAAAAACAATAATAAAAAGGATTTCTAAATAGGCCTAAATGGTGGAAAATTTAGAAA
1 T-TTCAA-AA-AA-GAAAA-TATTTCTAAATAGGCCTAAATGGTGGAAAATTTAAAAA
** * * * * *
8101998 -TTCAAAGGAGAAAATATTTTTAATTTGGCCCAAATGGTAGAATAATT
1 TTTCAAAAAAGAAAATATTTCTAAATAGGCCTAAATGGTGGAA-AATT
8102045 AGATATATTT
Statistics
Matches: 124, Mismatches: 26, Indels: 14
0.76 0.16 0.09
Matches are distributed among these distances:
51 9 0.07
52 26 0.21
53 42 0.34
54 3 0.02
55 3 0.02
56 4 0.03
57 4 0.03
58 33 0.27
ACGTcount: A:0.49, C:0.08, G:0.14, T:0.29
Consensus pattern (53 bp):
TTTCAAAAAAGAAAATATTTCTAAATAGGCCTAAATGGTGGAAAATTTAAAAA
Found at i:8108455 original size:23 final size:21
Alignment explanation
Indices: 8108422--8108463 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
8108412 TGGGTTACTA
*
8108422 GAGAAAGAAGAAGAGAAAAAGGG
1 GAGAAAAAAG-AGA-AAAAAGGG
8108445 GAGAAAAAAGAGAAAAAAG
1 GAGAAAAAAGAGAAAAAAG
8108464 AAAAAGAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 3 0.17
23 9 0.50
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (21 bp):
GAGAAAAAAGAGAAAAAAGGG
Found at i:8109097 original size:202 final size:203
Alignment explanation
Indices: 8108782--8109152 Score: 493
Period size: 202 Copynumber: 1.8 Consensus size: 203
8108772 AAGAAAAAAT
** ** * * *
8108782 AAATAAAAGATAAAAAATTTTGAAAATAAATATTAATTATTCAATGATGGAATTTATGAACATTT
1 AAATAAAAGATAAAAAATTTTGAAAATAAATACAAATTACCCAATGATGAAATTTATAAAAATTT
* * *
8108847 TAAATGGTAAATTTCTATAAAATTTTTAGGTGAGAAATTTTATCTAAA-TTGTCCCAAATTGTGA
66 CAAATGGTAAATTTCTATAAAATTTCTAGGTGAGAAATTTTATCTAAATTTGTCCCAAATGGTGA
* *
8108911 AATAATTTAGAT-AAAGTTTTAATAACAA-TAATTAATATTTATTTTCAAACAAAAAAAATAAAA
131 AATAATTTAGATGAAAATTTCAATAA-AAGTAATT-ATATTTATTTTCAAACAAAAAAAATAAAA
8108974 GCCAAGGAAA
194 GCCAAGGAAA
* *
8108984 AAATAAAA-ATATAAAAATTTTGGAATTAAATACAAATTACCCAATGATGAAATTCT-TAAAAAT
1 AAATAAAAGATA-AAAAATTTTGAAAATAAATACAAATTACCCAATGATGAAATT-TATAAAAAT
* * *
8109047 TTCAAATGGTAAATTTCTA-AGAAATTTCTAGGTGAGAGATTTTGTCTAAATTTGTCCTAAATGG
64 TTCAAATGGTAAATTTCTATA-AAATTTCTAGGTGAGAAATTTTATCTAAATTTGTCCCAAATGG
*
8109111 TGGAATAATTTAGATGAAAATTTCAATAAAAGTAATTATATT
128 TGAAATAATTTAGATGAAAATTTCAATAAAAGTAATTATATT
8109153 CTTTTCTAAA
Statistics
Matches: 145, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
201 4 0.03
202 92 0.63
203 33 0.23
204 16 0.11
ACGTcount: A:0.47, C:0.06, G:0.11, T:0.35
Consensus pattern (203 bp):
AAATAAAAGATAAAAAATTTTGAAAATAAATACAAATTACCCAATGATGAAATTTATAAAAATTT
CAAATGGTAAATTTCTATAAAATTTCTAGGTGAGAAATTTTATCTAAATTTGTCCCAAATGGTGA
AATAATTTAGATGAAAATTTCAATAAAAGTAATTATATTTATTTTCAAACAAAAAAAATAAAAGC
CAAGGAAA
Found at i:8109399 original size:53 final size:53
Alignment explanation
Indices: 8109328--8109536 Score: 181
Period size: 53 Copynumber: 3.9 Consensus size: 53
8109318 ATTATTTTCT
* *
8109328 TTTCCAAAAA-AAAA-ATTTCTAAATAGGCCAAAATGGTGGAAAATTTAAAAA
1 TTTCAAAAAAGAAAATATTTCTAAATAGGCCTAAATGGTGGAAAATTTAAAAA
* * *
8109379 TTTCAAAAAAGAAAATATTTCTAAATTGACCTAAATGGTGGAAATTTTAAAAA
1 TTTCAAAAAAGAAAATATTTCTAAATAGGCCTAAATGGTGGAAAATTTAAAAA
*** * * *
8109432 TAAAAAACAATAATAAAAAGGATTTCTAAATAGGCCTAAATGGTGGAAAATTTAGAAA
1 T-TTCAA-AA-AA-GAAAA-TATTTCTAAATAGGCCTAAATGGTGGAAAATTTAAAAA
** * * * * *
8109490 -TTCAAAGGAGAAAATATTTTTAATTTGGCCCAAATGGTAGAATAATT
1 TTTCAAAAAAGAAAATATTTCTAAATAGGCCTAAATGGTGGAA-AATT
8109537 AGATATATTT
Statistics
Matches: 124, Mismatches: 26, Indels: 14
0.76 0.16 0.09
Matches are distributed among these distances:
51 9 0.07
52 26 0.21
53 42 0.34
54 3 0.02
55 3 0.02
56 4 0.03
57 4 0.03
58 33 0.27
ACGTcount: A:0.49, C:0.08, G:0.14, T:0.29
Consensus pattern (53 bp):
TTTCAAAAAAGAAAATATTTCTAAATAGGCCTAAATGGTGGAAAATTTAAAAA
Found at i:8110570 original size:18 final size:18
Alignment explanation
Indices: 8110547--8110607 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
8110537 ATCATTTTTA
8110547 TTTCATTCTATGCATCAT
1 TTTCATTCTATGCATCAT
8110565 TTTCATAT-TAT-CAT-AT
1 TTTCAT-TCTATGCATCAT
*
8110581 CATTTCATTCTGTGCATCAT
1 --TTTCATTCTATGCATCAT
*
8110601 TATCATT
1 TTTCATT
8110608 TCATTTTATG
Statistics
Matches: 35, Mismatches: 2, Indels: 12
0.71 0.04 0.24
Matches are distributed among these distances:
16 2 0.06
17 4 0.11
18 23 0.66
19 4 0.11
20 2 0.06
ACGTcount: A:0.25, C:0.20, G:0.05, T:0.51
Consensus pattern (18 bp):
TTTCATTCTATGCATCAT
Found at i:8110605 original size:23 final size:23
Alignment explanation
Indices: 8110574--8110629 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
8110564 TTTTCATATT
*
8110574 ATCA-TATCATTTCATTCTGTGC
1 ATCATTATCATTTCATTCTATGC
*
8110596 ATCATTATCATTTCATTTTATGC
1 ATCATTATCATTTCATTCTATGC
*
8110619 ATCATTTTCAT
1 ATCATTATCAT
8110630 GCTCATGATT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 4 0.13
23 26 0.87
ACGTcount: A:0.25, C:0.20, G:0.05, T:0.50
Consensus pattern (23 bp):
ATCATTATCATTTCATTCTATGC
Found at i:8112637 original size:19 final size:21
Alignment explanation
Indices: 8112589--8112639 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
8112579 TCTTGTCATT
*
8112589 TTAGGATTTCTTTTAGAGTAA
1 TTAGGATTTCTTTTAGAGCAA
8112610 TGTTAGGATTTCTTTTAG-GCAA
1 --TTAGGATTTCTTTTAGAGCAA
8112632 -TAGGATTT
1 TTAGGATTT
8112640 TCATTTGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 8 0.30
22 3 0.11
23 16 0.59
ACGTcount: A:0.25, C:0.06, G:0.22, T:0.47
Consensus pattern (21 bp):
TTAGGATTTCTTTTAGAGCAA
Found at i:8113609 original size:37 final size:35
Alignment explanation
Indices: 8113547--8113654 Score: 118
Period size: 37 Copynumber: 3.1 Consensus size: 35
8113537 AGGAAAGAGA
8113547 AAATAAAT-AAAATAAAAGAGAAAAAATGAAAAAAAG
1 AAATAAATGAAAA-AAAAGAG-AAAAATGAAAAAAAG
8113583 AAGATAAATGAAAAAAAATGAGAAAAATG--AAAAA-
1 AA-ATAAATGAAAAAAAA-GAGAAAAATGAAAAAAAG
* * *
8113617 AAATAGA-GAAAAAAAAGGGAAAAATGAAAAAAAA
1 AAATAAATGAAAAAAAAGAGAAAAATGAAAAAAAG
8113651 AAAT
1 AAAT
8113655 GAAAGAATGA
Statistics
Matches: 64, Mismatches: 2, Indels: 14
0.80 0.03 0.17
Matches are distributed among these distances:
31 9 0.14
32 9 0.14
33 9 0.14
34 6 0.09
35 5 0.08
36 2 0.03
37 17 0.27
38 7 0.11
ACGTcount: A:0.76, C:0.00, G:0.14, T:0.10
Consensus pattern (35 bp):
AAATAAATGAAAAAAAAGAGAAAAATGAAAAAAAG
Found at i:8113647 original size:18 final size:18
Alignment explanation
Indices: 8113551--8113670 Score: 92
Period size: 19 Copynumber: 6.7 Consensus size: 18
8113541 AAGAGAAAAT
8113551 AAAT-AAAATAAAAGAGAAA
1 AAATGAAAA-AAAAGAG-AA
*
8113570 AAATG-AAAAAAAGAAGAT
1 AAATGAAAAAAAAG-AGAA
8113588 AAATGAAAAAAAATGAGAA
1 AAATGAAAAAAAA-GAGAA
*
8113607 AAATGAAAAAAAATAG--
1 AAATGAAAAAAAAGAGAA
*
8113623 --A-GAAAAAAAAGGGAA
1 AAATGAAAAAAAAGAGAA
*
8113638 AAATGAAAAAAAAAAATGAA
1 AAATG-AAAAAAAAGA-GAA
8113658 AGAATGAAAAAAA
1 A-AATGAAAAAAA
8113671 GATGAAAATG
Statistics
Matches: 82, Mismatches: 7, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
13 10 0.12
14 1 0.01
17 1 0.01
18 14 0.17
19 40 0.49
20 12 0.15
21 4 0.05
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (18 bp):
AAATGAAAAAAAAGAGAA
Found at i:8113652 original size:20 final size:20
Alignment explanation
Indices: 8113615--8113670 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
8113605 AAAAATGAAA
* *
8113615 AAAAATAGAGAAAAAAAAGGG
1 AAAAAT-GAAAAAAAAAAAGG
*
8113636 AAAAATGAAAAAAAAAAATG
1 AAAAATGAAAAAAAAAAAGG
8113656 AAAGAATGAAAAAAA
1 AAA-AATGAAAAAAA
8113671 GATGAAAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 14 0.45
21 17 0.55
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (20 bp):
AAAAATGAAAAAAAAAAAGG
Found at i:8113653 original size:21 final size:21
Alignment explanation
Indices: 8113625--8113670 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
8113615 AAAAATAGAG
*
8113625 AAAAAAAAGGGAAA-AATGAA
1 AAAAAAAAAGGAAAGAATGAA
*
8113645 AAAAAAAAATGAAAGAATGAA
1 AAAAAAAAAGGAAAGAATGAA
8113666 AAAAA
1 AAAAA
8113671 GATGAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.78, C:0.00, G:0.15, T:0.07
Consensus pattern (21 bp):
AAAAAAAAAGGAAAGAATGAA
Found at i:8113687 original size:21 final size:19
Alignment explanation
Indices: 8113623--8113688 Score: 55
Period size: 21 Copynumber: 3.3 Consensus size: 19
8113613 AAAAAAATAG
*
8113623 AGAAAAAAAAGGGAAAAATGA
1 AGAAAAAAAA-TG-AAAATGA
*
8113644 AAAAAAAAAATG-AAA-GA
1 AGAAAAAAAATGAAAATGA
8113661 ATGAAAAAAAGATGAAAATGA
1 A-GAAAAAAA-ATGAAAATGA
8113682 GAGAAAA
1 -AGAAAA
8113689 GGAAGATTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
17 3 0.08
18 10 0.27
19 3 0.08
20 4 0.11
21 16 0.43
22 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.08
Consensus pattern (19 bp):
AGAAAAAAAATGAAAATGA
Found at i:8115033 original size:30 final size:30
Alignment explanation
Indices: 8114999--8115090 Score: 123
Period size: 30 Copynumber: 3.1 Consensus size: 30
8114989 TTGAATGTGA
8114999 ATCTTTGAACTCAAATGAAAATCTTTAAGG
1 ATCTTTGAACTCAAATGAAAATCTTTAAGG
** *
8115029 ATCTTCAAACTCAAATGAAAATCTTTAAGA
1 ATCTTTGAACTCAAATGAAAATCTTTAAGG
* *
8115059 ATCTTTGAATTCAAAT-AAGAATCTTTGAGG
1 ATCTTTGAACTCAAATGAA-AATCTTTAAGG
8115089 AT
1 AT
8115091 TTTTCAATCT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
29 2 0.04
30 51 0.96
ACGTcount: A:0.41, C:0.13, G:0.12, T:0.34
Consensus pattern (30 bp):
ATCTTTGAACTCAAATGAAAATCTTTAAGG
Found at i:8115688 original size:42 final size:42
Alignment explanation
Indices: 8115531--8116201 Score: 785
Period size: 41 Copynumber: 16.3 Consensus size: 42
8115521 GTTAATGAGT
* * *
8115531 ATTTTATTTTTCAAAAGTTATGATGCCTCTGTTTAAAGGAGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* *
8115573 ATTTTATTTTTC-AATGTTGTGGTGCCTCTGTTTAGAGCAGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * *
8115614 TTTTTATTTTTC-AAAGTTGTGGTGCCTCTGTTTAGAGAATC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
** * *
8115655 ATTTTATTTTTCAAAAGTTACGGTGCCTTTGTTTAGAGGGGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
*
8115697 ATTTTATTTTT-AAAAGTTATGGTGCCTCTGTTTAGAGGAGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * *
8115738 ATTTTA-TTTTCAAAGGTTGTGGTGTCTCTGTTTAGATGAGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * *
8115779 ATTTTATTTTTC-AAAGTTATGGTGCCTTTGTTTAAAAGAGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * * * *
8115820 ATTTTATTTTTGAAAAGTTGTGGTACCTTTGTTTAAATGAGT
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* *
8115862 ATTTTATTTTTC-AAAGTTATAGTGCCTCTG--TAGAGGAGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * * *
8115901 TTTTTATTTTTCAAAATTTGTGTTACCTCTATTTAGAGGAGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* *
8115943 ATTTTATATTTCAAAAGTTGTGGTGCCTCTATTTAGAGGAGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* *
8115985 ATTTTATTTTTC-AAAGTTGTGAT-CCTCTGTTTAGAGGAGT
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * *
8116025 AATTTATTTTTC-AAAGTTCTAGTGCCTCCGTTTAGAGGAGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * *
8116066 ATTTTATATTTCAAAAGTTATGGTGCCTATGTTTAGAGGAGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * *
8116108 AATTTATTTTTCCAAAGTTGTGGTGCCTATGTTTAGAGAAGC
1 ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* *
8116150 AATTTACTTTTTC--AAGTTGTGATGCCTCTGTTTAGAGGAGC
1 ATTTTA-TTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
8116191 A-TTTATTTTTC
1 ATTTTATTTTTC
8116202 TCAAAGTCGT
Statistics
Matches: 541, Mismatches: 78, Indels: 23
0.84 0.12 0.04
Matches are distributed among these distances:
39 23 0.04
40 54 0.10
41 246 0.45
42 212 0.39
43 6 0.01
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.45
Consensus pattern (42 bp):
ATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
Found at i:8116201 original size:165 final size:165
Alignment explanation
Indices: 8115531--8116201 Score: 802
Period size: 165 Copynumber: 4.1 Consensus size: 165
8115521 GTTAATGAGT
* * *
8115531 ATTTTATTTTTCAAAAGTTAT-GATGCCTCTGTTTAAAGGAGCATTTTATTTTTC-AATGTTGTG
1 ATTTTATTTTTC-AAAGTTATAG-TGCCTCCGTTTAGAGGAGCATTTTATTTTTCAAAAGTTGTG
* * *
8115594 GTGCCTCTGTTTAGAGCAGCTTTTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGAATCATTT
64 GTGCCTCTGTTTAGAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGAAGCATTT
** * * *
8115659 TATTTTTCAAAAGTTACGGTGCCTTTGTTTAGAGGGGC
129 TATTTTTC-AAAGTTGTGATGCCTCTGTTTAGAGGAGC
* * * *
8115697 ATTTTATTTTTAAAAGTTATGGTGCCTCTGTTTAGAGGAGCATTTTA-TTTTCAAAGGTTGTGGT
1 ATTTTATTTTTCAAAGTTATAGTGCCTCCGTTTAGAGGAGCATTTTATTTTTCAAAAGTTGTGGT
* * * * *
8115761 GTCTCTGTTTAGATGAGCATTTTATTTTTCAAAGTTATGGTGCCTTTGTTTA-AAAGAGCATTTT
66 GCCTCTGTTTAGAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGA-AGCATTTT
* * * * * * *
8115825 ATTTTTGAAAAGTTGTGGTACCTTTGTTTAAATGAGT
130 ATTTTT-CAAAGTTGTGATGCCTCTGTTTAGAGGAGC
* * * *
8115862 ATTTTATTTTTCAAAGTTATAGTGCCT-C-TGTAGAGGAGCTTTTTATTTTTCAAAATTTGTGTT
1 ATTTTATTTTTCAAAGTTATAGTGCCTCCGTTTAGAGGAGCATTTTATTTTTCAAAAGTTGTGGT
* * * * *
8115925 ACCTCTATTTAGAGGAGCATTTTATATTTCAAAAGTTGTGGTGCCTCTATTTAGAGGAGCATTTT
66 GCCTCTGTTTAGAGGAGCATTTTATTTTTC-AAAGTTGTGGTGCCTCTGTTTAGAGAAGCATTTT
*
8115990 ATTTTTCAAAGTTGTGAT-CCTCTGTTTAGAGGAGT
130 ATTTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGC
* * * *
8116025 AATTTATTTTTCAAAGTTCTAGTGCCTCCGTTTAGAGGAGCATTTTATATTTCAAAAGTTATGGT
1 ATTTTATTTTTCAAAGTTATAGTGCCTCCGTTTAGAGGAGCATTTTATTTTTCAAAAGTTGTGGT
* * * *
8116090 GCCTATGTTTAGAGGAGCAATTTATTTTTCCAAAGTTGTGGTGCCTATGTTTAGAGAAGCAATTT
66 GCCTCTGTTTAGAGGAGCATTTTATTTTT-CAAAGTTGTGGTGCCTCTGTTTAGAGAAGCATTTT
8116155 ACTTTTTC-AAGTTGTGATGCCTCTGTTTAGAGGAGC
130 A-TTTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGC
8116191 A-TTTATTTTTC
1 ATTTTATTTTTC
8116202 TCAAAGTCGT
Statistics
Matches: 433, Mismatches: 60, Indels: 25
0.84 0.12 0.05
Matches are distributed among these distances:
163 54 0.12
164 57 0.13
165 285 0.66
166 37 0.09
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.45
Consensus pattern (165 bp):
ATTTTATTTTTCAAAGTTATAGTGCCTCCGTTTAGAGGAGCATTTTATTTTTCAAAAGTTGTGGT
GCCTCTGTTTAGAGGAGCATTTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGAAGCATTTTA
TTTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGC
Found at i:8116856 original size:21 final size:21
Alignment explanation
Indices: 8116810--8116854 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
8116800 AAACTTGAAA
*
8116810 TTTTCGATGTGTTCTTTCTAG
1 TTTTCGATGTGTTCTTTCCAG
*
8116831 TTTTCGGTGTGTT-TTTCCAG
1 TTTTCGATGTGTTCTTTCCAG
8116851 TTTT
1 TTTT
8116855 TCAATGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.07, C:0.13, G:0.20, T:0.60
Consensus pattern (21 bp):
TTTTCGATGTGTTCTTTCCAG
Found at i:8119120 original size:12 final size:13
Alignment explanation
Indices: 8119093--8119121 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8119083 GTAGGGTGAT
8119093 TGGTCGGGGAGGC
1 TGGTCGGGGAGGC
8119106 TGGTCGGGG-GGC
1 TGGTCGGGGAGGC
8119118 TGGT
1 TGGT
8119122 AGGGTAGTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.03, C:0.14, G:0.62, T:0.21
Consensus pattern (13 bp):
TGGTCGGGGAGGC
Found at i:8119231 original size:19 final size:19
Alignment explanation
Indices: 8119190--8119231 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8119180 ATTCTGTTTC
* **
8119190 TTTTGTTGTTTATTATTTT
1 TTTTGTTGTTTATTAATAA
8119209 TTTTGTTGTTTATTAATAA
1 TTTTGTTGTTTATTAATAA
8119228 TTTT
1 TTTT
8119232 TTTATTAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.74
Consensus pattern (19 bp):
TTTTGTTGTTTATTAATAA
Found at i:8119701 original size:13 final size:13
Alignment explanation
Indices: 8119683--8119712 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8119673 TCACAACTTT
8119683 AAAATCTCATCTG
1 AAAATCTCATCTG
*
8119696 AAAATCTTATCTG
1 AAAATCTCATCTG
8119709 AAAA
1 AAAA
8119713 AGCTCCTCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.17, G:0.07, T:0.30
Consensus pattern (13 bp):
AAAATCTCATCTG
Found at i:8119740 original size:60 final size:62
Alignment explanation
Indices: 8119647--8119761 Score: 198
Period size: 60 Copynumber: 1.9 Consensus size: 62
8119637 ATTCTCATCT
* *
8119647 TGAAAAAGCTCCTCTCAGCAGAGGCTTCACAACTTTAAAA-TCTCATC-TGAAAATCTTATC
1 TGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAAAATCTTATC
8119707 TGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAAAA
1 TGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAAAA
8119762 GCTCCTCTCA
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
60 38 0.75
61 7 0.14
62 6 0.12
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.27
Consensus pattern (62 bp):
TGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAAAATCTTATC
Found at i:8119754 original size:109 final size:109
Alignment explanation
Indices: 8119609--8119808 Score: 350
Period size: 109 Copynumber: 1.8 Consensus size: 109
8119599 AGCTCATCTG
*
8119609 CTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAAGCTCCTCTCAGCAGAGGCTT
1 CTCTCAACAGAGGCTCAACAACTTTAAAATTCTCATCTTG-AAAAGCTCCTCTCAGCAGAGGC-T
8119674 C-ACAACTTTAAAA-TCTCATCTGAAAATCTTATCTGAAAAAGCTC
64 CAACAACTTTAAAATTCTCATCTGAAAATCTTATCTGAAAAAGCTC
*
8119718 CTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAAAAGCTCCTCTCAGCAGAGGCTCA
1 CTCTCAACAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAGCTCCTCTCAGCAGAGGCTCA
8119783 ACAACTTTAAAATTCTCATCTGAAAA
66 ACAACTTTAAAATTCTCATCTGAAAA
8119809 GCTCCTCTCA
Statistics
Matches: 87, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
107 2 0.02
108 34 0.39
109 51 0.59
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.27
Consensus pattern (109 bp):
CTCTCAACAGAGGCTCAACAACTTTAAAATTCTCATCTTGAAAAGCTCCTCTCAGCAGAGGCTCA
ACAACTTTAAAATTCTCATCTGAAAATCTTATCTGAAAAAGCTC
Found at i:8119766 original size:48 final size:49
Alignment explanation
Indices: 8119707--8120180 Score: 687
Period size: 47 Copynumber: 10.0 Consensus size: 49
8119697 AAATCTTATC
* *
8119707 TGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCT
8119756 TG-AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATC-
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCT
* *
8119803 TG-AAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATCTCATCT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCT
*
8119851 TG-AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATT-TCTTC-
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCT
* *
8119897 TGAAAAAGCTCCTCTCAACAGAGGCTC-ACAACTTTAAAAATTCTCATAT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATTCTCATCT
8119946 TG-AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCA--T
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCT
8119992 TGAAAAAGCTCCTCT-AGCAGA-GCTCAACAACTTTAAAATTCT--TCT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCT
* *
8120037 TGAAAAAGCT-CTCTCAACAGAGGCTCCACAACTTTAAAAATTCTCAT-T
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATTCTCATCT
* *
8120085 GGAAAAAGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCT--TCT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCT
* *
8120132 TGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCT
1 TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCT
8120181 GTTTTCAAAT
Statistics
Matches: 386, Mismatches: 21, Indels: 36
0.87 0.05 0.08
Matches are distributed among these distances:
44 4 0.01
45 37 0.10
46 32 0.08
47 139 0.36
48 136 0.35
49 38 0.10
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.27
Consensus pattern (49 bp):
TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATCT
Found at i:8119825 original size:47 final size:48
Alignment explanation
Indices: 8119696--8120181 Score: 671
Period size: 48 Copynumber: 10.3 Consensus size: 48
8119686 ATCTCATCTG
* * *
8119696 AAAA-TCTTATCTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTT
1 AAAATTCTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
8119743 AAAATTCTCATCTTG-AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
1 AAAATTCTCATC-TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
*
8119791 AAAATTCTCATCTG-AAAAGCTCCTCTCAGCAGAGGCTCCACAACTTT
1 AAAATTCTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
*
8119838 AAAAATCTCATCTTG-AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
1 AAAATTCTCATC-TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
* *
8119886 AAAATT-TCTTCTGAAAAAGCTCCTCTCAACAGAGGCTC-ACAACTTT
1 AAAATTCTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
*
8119932 AAAAATTCTCATATTG-AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
1 -AAAATTCTCAT-CTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
8119981 AAAATTCTCAT-TGAAAAAGCTCCTCT-AGCAGA-GCTCAACAACTTT
1 AAAATTCTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
* *
8120026 AAAATTCT--TCTTGAAAAAGCT-CTCTCAACAGAGGCTCCACAACTTT
1 AAAATTCTCATC-TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
*
8120072 AAAAATTCTCAT-TGGAAAAAGCTCCTCTCAGTAGAGGCTCAACAACTTT
1 -AAAATTCTCATCT-GAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
* *
8120121 AAAATTCT--TCTTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTT
1 AAAATTCTCATC-TGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
8120168 AAAATTCTCATCTG
1 AAAATTCTCATCTG
8120182 TTTTCAAATT
Statistics
Matches: 397, Mismatches: 20, Indels: 43
0.86 0.04 0.09
Matches are distributed among these distances:
43 1 0.00
44 4 0.01
45 36 0.09
46 31 0.08
47 143 0.36
48 145 0.37
49 37 0.09
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.27
Consensus pattern (48 bp):
AAAATTCTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
Found at i:8119859 original size:95 final size:96
Alignment explanation
Indices: 8119696--8120181 Score: 701
Period size: 95 Copynumber: 5.1 Consensus size: 96
8119686 ATCTCATCTG
* * *
8119696 AAAA-TCTTATCTGAAAAAGCTCCTCTCAACAGAGGCTCCACAACTTTAAAATTCTCATCTTGAA
1 AAAATTCTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATCTCATCTTGAA
8119760 AAGCTCCTCTCAGCAGAGGCTCAACAACTTT
66 AAGCTCCTCTCAGCAGAGGCTCAACAACTTT
8119791 AAAATTCTCATCTG-AAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATCTCATCTTGAA
1 AAAATTCTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATCTCATCTTGAA
8119855 AAGCTCCTCTCAGCAGAGGCTCAACAACTTT
66 AAGCTCCTCTCAGCAGAGGCTCAACAACTTT
* * *
8119886 AAAATT-TCTTCTGAAAAAGCTCCTCTCAACAGAGGCT-CACAACTTTAAAAATTCTCATATTGA
1 AAAATTCTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAA-TCTCATCTTGA
8119949 AAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
65 AAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
* *
8119981 AAAATTCTCAT-TGAAAAAGCTCCTCT-AGCAGA-GCTCAACAACTTT-AAAAT-TCTTCTTGAA
1 AAAATTCTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATCTCATCTTG-A
* *
8120041 AAAGCT-CTCTCAACAGAGGCTCCACAACTTT
65 AAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
* * *
8120072 AAAAATTCTCAT-TGGAAAAAGCTCCTCTCAGTAGAGGCTCAACAACTTT-AAAAT-TCTTCTTG
1 -AAAATTCTCATCT-GAAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATCTCATCTTG
* *
8120134 AAAAAGCTCCTCTCAACAGAGGCTCCACAACTTT
64 -AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT
8120168 AAAATTCTCATCTG
1 AAAATTCTCATCTG
8120182 TTTTCAAATT
Statistics
Matches: 365, Mismatches: 14, Indels: 24
0.91 0.03 0.06
Matches are distributed among these distances:
91 29 0.08
92 20 0.05
93 21 0.06
94 38 0.10
95 220 0.60
96 37 0.10
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.27
Consensus pattern (96 bp):
AAAATTCTCATCTGAAAAAGCTCCTCTCAGCAGAGGCTCCACAACTTTAAAAATCTCATCTTGAA
AAGCTCCTCTCAGCAGAGGCTCAACAACTTT
Found at i:8130838 original size:16 final size:16
Alignment explanation
Indices: 8130794--8130851 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
8130784 GTTTAATATT
8130794 TTTTA-TTTATTTGTTA
1 TTTTATTTTATTT-TTA
*
8130810 TTTGT-TTTCATTTTTA
1 TTT-TATTTTATTTTTA
*
8130826 TTTTATTTTATTTTATT
1 TTTTATTTTATTTT-TA
8130843 TTTTATTTT
1 TTTTATTTT
8130852 CTTTAAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
15 1 0.03
16 17 0.49
17 17 0.49
ACGTcount: A:0.16, C:0.02, G:0.03, T:0.79
Consensus pattern (16 bp):
TTTTATTTTATTTTTA
Found at i:8131070 original size:61 final size:59
Alignment explanation
Indices: 8130864--8131256 Score: 490
Period size: 59 Copynumber: 6.6 Consensus size: 59
8130854 TTAAATAAAA
*
8130864 TTCAAAAAAAATATTTTTGTGGAAAAA-TTGAAAGTATCAATTTTCCTTGAAAATAAGCT
1 TTCAAAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTT
* * * *
8130923 TTCAAAAAAAATATTTTTGGGAAAAAGTTGAAAGCATCAATTTTCTTTAAAAATGAGTT
1 TTCAAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTT
*** * * *
8130982 TTC--AAAAGGGATTTTTGAGG-AAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTT
1 TTCAAAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAGTT
* *
8131040 TTCAAAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCTTTCAAAATAAGCTT
1 TTC-AAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAG-TT
* * * * *
8131101 TCCAAAAAAAAATATTTTTCGAAAAAAGTTGACAGTATCAATTTTCCTTGAAAATAAGCTG
1 TTC-AAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAG-TT
* * *
8131162 TCCAAAAAAAA-ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTT
1 TTCAAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTT
*
8131220 TTCAAAAAAAATATTTTTAGGAAAAAGTTGAAAGTAT
1 TTCAAAAAAAATATTTTTGGGAAAAAGTTGAAAGTAT
8131257 TCCTTAAAAA
Statistics
Matches: 286, Mismatches: 39, Indels: 18
0.83 0.11 0.05
Matches are distributed among these distances:
57 37 0.13
58 27 0.09
59 112 0.39
60 13 0.05
61 97 0.34
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (59 bp):
TTCAAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTT
Found at i:8132644 original size:11 final size:11
Alignment explanation
Indices: 8132601--8132647 Score: 51
Period size: 11 Copynumber: 4.1 Consensus size: 11
8132591 ATAATTTTAG
8132601 ATTTTTTG-AA
1 ATTTTTTGAAA
8132611 ATTTTTTGGAAA
1 ATTTTTT-GAAA
*
8132623 TTAGTTTTTGAAA
1 --ATTTTTTGAAA
8132636 ATTTTTTGAAA
1 ATTTTTTGAAA
8132647 A
1 A
8132648 AATTCAGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
10 7 0.23
11 12 0.39
12 2 0.06
13 4 0.13
14 6 0.19
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (11 bp):
ATTTTTTGAAA
Found at i:8133827 original size:110 final size:112
Alignment explanation
Indices: 8133686--8133887 Score: 277
Period size: 110 Copynumber: 1.8 Consensus size: 112
8133676 AAAAAAAAAT
8133686 AAAAAGAATTTTCTAAAAAAGCCAAAATGGTGGAAAATTTAGAAATTTCAAAAAAGAAAAT-TTT
1 AAAAAGAATTTTCTAAAAAAGCCAAAATGGTGGAAAATTTAGAAA-TTCAAAAAAGAAAATATTT
*
8133750 TCTAAATTGACCTAAATGGT-GAAAAATTTAGAAATAAAAATAATAATA
65 T-TAAATTGACCAAAATGGTAGAAAAATTTAGAAATAAAAATAATAATA
* * * **
8133798 AAAAAG-A-TTTCTAAATAGGCCTAAATGGTGGAAAATTTAGAAATTCAAAGGAGAAAATATTTT
1 AAAAAGAATTTTCTAAAAAAGCCAAAATGGTGGAAAATTTAGAAATTCAAAAAAGAAAATATTTT
* * *
8133861 TAATTTGGCCAAAATGGTAGAATAATT
66 TAAATTGACCAAAATGGTAGAAAAATT
8133888 AGATATATTT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
109 28 0.35
110 44 0.56
111 1 0.01
112 6 0.08
ACGTcount: A:0.50, C:0.06, G:0.14, T:0.29
Consensus pattern (112 bp):
AAAAAGAATTTTCTAAAAAAGCCAAAATGGTGGAAAATTTAGAAATTCAAAAAAGAAAATATTTT
TAAATTGACCAAAATGGTAGAAAAATTTAGAAATAAAAATAATAATA
Found at i:8134959 original size:23 final size:23
Alignment explanation
Indices: 8134925--8134980 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 23
8134915 TTTTCATATT
8134925 ATCA-TATCATTTCATTC-AGTGC
1 ATCATTATCATTTCATTCTA-TGC
8134947 ATCATTATCATTTCATTCTATGC
1 ATCATTATCATTTCATTCTATGC
*
8134970 ATCATTTTCAT
1 ATCATTATCAT
8134981 GCTCATGATT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
22 4 0.13
23 26 0.84
24 1 0.03
ACGTcount: A:0.27, C:0.21, G:0.05, T:0.46
Consensus pattern (23 bp):
ATCATTATCATTTCATTCTATGC
Found at i:8137479 original size:13 final size:13
Alignment explanation
Indices: 8137455--8137511 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
8137445 AAAAGGTCTC
8137455 AAAGATTAAAAAAA
1 AAAGA-TAAAAAAA
8137469 AAAGATAAAAAAA
1 AAAGATAAAAAAA
* * *
8137482 CAAAAAGAAAAAGA
1 -AAAGATAAAAAAA
8137496 AAAGA-AAAAAAGA
1 AAAGATAAAAAA-A
8137509 AAA
1 AAA
8137512 ATGAATGCCA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
12 5 0.14
13 16 0.44
14 15 0.42
ACGTcount: A:0.82, C:0.02, G:0.11, T:0.05
Consensus pattern (13 bp):
AAAGATAAAAAAA
Found at i:8137900 original size:9 final size:10
Alignment explanation
Indices: 8137882--8138041 Score: 128
Period size: 9 Copynumber: 16.5 Consensus size: 10
8137872 ATAGGAAAGA
8137882 GAAAAAAAAT
1 GAAAAAAAAT
*
8137892 -AAAATAAAT
1 GAAAAAAAAT
8137901 -AAAAAAAAT
1 GAAAAAAAAT
8137910 GAAAAAAAAT
1 GAAAAAAAAT
8137920 G-AAAAAAA-
1 GAAAAAAAAT
8137928 GAAAAAAAAT
1 GAAAAAAAAT
8137938 G-AAAAAAAT
1 GAAAAAAAAT
8137947 GAAAAAAAAT
1 GAAAAAAAAT
*
8137957 G-AGAAAAAT
1 GAAAAAAAAT
8137966 G---AAAAAT
1 GAAAAAAAAT
*
8137973 GAAAAAAGA-
1 GAAAAAAAAT
*
8137982 GAGAGAAAAA-
1 GA-AAAAAAAT
8137992 GAAAAGGGAAAAT
1 GAAAA---AAAAT
8138005 GAAAAAAAA-
1 GAAAAAAAAT
*
8138014 AAAAGAAAGAAT
1 GAAA-AAA-AAT
8138026 GAAAAAAAGAT
1 GAAAAAAA-AT
8138037 GAAAA
1 GAAAA
8138042 TGAGAGAAAA
Statistics
Matches: 125, Mismatches: 9, Indels: 31
0.76 0.05 0.19
Matches are distributed among these distances:
7 7 0.06
8 1 0.01
9 54 0.43
10 39 0.31
11 12 0.10
12 7 0.06
13 5 0.04
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (10 bp):
GAAAAAAAAT
Found at i:8137950 original size:19 final size:19
Alignment explanation
Indices: 8137884--8137971 Score: 135
Period size: 19 Copynumber: 4.7 Consensus size: 19
8137874 AGGAAAGAGA
* *
8137884 AAAAAAAT-AAAATAAATA
1 AAAAAAATGAAAAAAAATG
8137902 AAAAAAATGAAAAAAAATG
1 AAAAAAATGAAAAAAAATG
8137921 AAAAAAA-GAAAAAAAATG
1 AAAAAAATGAAAAAAAATG
8137939 AAAAAAATGAAAAAAAATG
1 AAAAAAATGAAAAAAAATG
*
8137958 AGAAAAATGAAAAA
1 AAAAAAATGAAAAA
8137972 TGAAAAAAGA
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
18 26 0.40
19 39 0.60
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.10
Consensus pattern (19 bp):
AAAAAAATGAAAAAAAATG
Found at i:8137987 original size:27 final size:26
Alignment explanation
Indices: 8137914--8138035 Score: 101
Period size: 26 Copynumber: 4.6 Consensus size: 26
8137904 AAAAATGAAA
*
8137914 AAAAATGAAAAAAAGA-AAAAAAATG
1 AAAAATGAAAAAAAGAGAGAAAAATG
8137939 AAAAAAATGAAAAAAA-ATGAGAAAAATG
1 --AAAAATGAAAAAAAGA-GAGAAAAATG
8137967 AAAAATGAAAAAAGAGAGAGAAAAA-G
1 AAAAATGAAAAAA-AGAGAGAAAAATG
** * *
8137993 AAAAGGGAAAATGAAA-A-AAAAAAAAG
1 AAAAATGAAAA--AAAGAGAGAAAAATG
8138019 AAAGAATGAAAAAAAGA
1 AAA-AATGAAAAAAAGA
8138036 TGAAAATGAG
Statistics
Matches: 80, Mismatches: 6, Indels: 19
0.76 0.06 0.18
Matches are distributed among these distances:
25 9 0.11
26 30 0.38
27 30 0.38
28 11 0.14
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (26 bp):
AAAAATGAAAAAAAGAGAGAAAAATG
Found at i:8137990 original size:39 final size:40
Alignment explanation
Indices: 8137886--8138038 Score: 135
Period size: 37 Copynumber: 4.0 Consensus size: 40
8137876 GAAAGAGAAA
* *
8137886 AAAAAT-AAAATAAATAAA-AAA-AATGAAAAAAAATGA-
1 AAAAATGAAAAAAAAAAAAGAAAGAATGAAAAAAAATGAG
* **
8137922 AAAAAAGAAAAAAAATGAA-AAA-AATGAAAAAAAATGAG
1 AAAAATGAAAAAAAAAAAAGAAAGAATGAAAAAAAATGAG
* * *
8137960 AAAAATGAAAAATGAAAAAAGAGAG-A-GAAAAAGAAAAG-G
1 AAAAATGAAAAA-AAAAAAAGAAAGAATGAAAAA-AAATGAG
*
8137999 GAAAATGAAAAAAAAAAAAGAAAGAATGAAAAAAAGATGA
1 AAAAATGAAAAAAAAAAAAGAAAGAATGAAAAAAA-ATGA
8138039 AAATGAGAGA
Statistics
Matches: 94, Mismatches: 13, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
36 5 0.05
37 28 0.30
38 21 0.22
39 25 0.27
40 15 0.16
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.08
Consensus pattern (40 bp):
AAAAATGAAAAAAAAAAAAGAAAGAATGAAAAAAAATGAG
Found at i:8138011 original size:21 final size:22
Alignment explanation
Indices: 8137987--8138035 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
8137977 AAAGAGAGAG
* *
8137987 AAAAAGAAAAGGGAA-AATGAA
1 AAAAAGAAAAAGAAAGAATGAA
8138008 AAAAA-AAAAAGAAAGAATGAA
1 AAAAAGAAAAAGAAAGAATGAA
8138029 AAAAAGA
1 AAAAAGA
8138036 TGAAAATGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 7 0.29
21 16 0.67
22 1 0.04
ACGTcount: A:0.78, C:0.00, G:0.18, T:0.04
Consensus pattern (22 bp):
AAAAAGAAAAAGAAAGAATGAA
Found at i:8138021 original size:19 final size:18
Alignment explanation
Indices: 8137883--8138033 Score: 92
Period size: 19 Copynumber: 7.9 Consensus size: 18
8137873 TAGGAAAGAG
*
8137883 AAAAAAAAT-AAAATAAAT
1 AAAAAAAATGAAAA-AAAA
8137901 AAAAAAAATGAAAAAAAA
1 AAAAAAAATGAAAAAAAA
*
8137919 TGAAAAAAA-GAAAAAAAA
1 -AAAAAAAATGAAAAAAAA
*
8137937 TGAAAAAAATGAAAAAAAA
1 -AAAAAAAATGAAAAAAAA
* *
8137956 TGAGAAAAATGAAAAATGAAA
1 -AAAAAAAATGAAAAA--AAA
* *
8137977 AAAGAGAGA-GAAAAAGAAA
1 AAA-AAAAATGAAAAA-AAA
***
8137996 AGGGAAAATGAAAAAAAAA
1 AAAAAAAATG-AAAAAAAA
8138015 AAAGAAAGAATGAAAAAAA
1 AAA-AAA-AATGAAAAAAA
8138034 GATGAAAATG
Statistics
Matches: 108, Mismatches: 15, Indels: 18
0.77 0.11 0.13
Matches are distributed among these distances:
18 32 0.30
19 45 0.42
20 21 0.19
21 10 0.09
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (18 bp):
AAAAAAAATGAAAAAAAA
Found at i:8139424 original size:30 final size:30
Alignment explanation
Indices: 8139381--8139524 Score: 108
Period size: 30 Copynumber: 5.1 Consensus size: 30
8139371 TATTAAATGT
**
8139381 GAATCTTTGAACTCAAATGAGAATCTTTGA
1 GAATCTTCAAACTCAAATGAGAATCTTTGA
** *
8139411 GGTTCTTCAAACTCAAATGAGAATCTTTAA
1 GAATCTTCAAACTCAAATGAGAATCTTTGA
* * *
8139441 GAATCTTCGAATTCAAATAAGAATCTTTGA
1 GAATCTTCAAACTCAAATGAGAATCTTTGA
*
8139471 -AA-C-T-----T-AAATGAGAATCTTTAA
1 GAATCTTCAAACTCAAATGAGAATCTTTGA
* * *
8139492 GGATCTTTCAATCTCAAATAAGAATCTTTGA
1 GAATC-TTCAAACTCAAATGAGAATCTTTGA
8139523 GA
1 GA
8139525 TGTAAAACTC
Statistics
Matches: 87, Mismatches: 17, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
21 14 0.16
22 2 0.02
23 1 0.01
25 1 0.01
27 1 0.01
28 1 0.01
29 2 0.02
30 50 0.57
31 15 0.17
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (30 bp):
GAATCTTCAAACTCAAATGAGAATCTTTGA
Found at i:8139480 original size:51 final size:52
Alignment explanation
Indices: 8139419--8139522 Score: 167
Period size: 51 Copynumber: 2.0 Consensus size: 52
8139409 GAGGTTCTTC
8139419 AAACTCAAATGAGAATCTTTAAGAATC-TTCGAAT-TCAAATAAGAATCTTTG
1 AAACTCAAATGAGAATCTTTAAGAATCTTTC-AATCTCAAATAAGAATCTTTG
* *
8139470 AAACTTAAATGAGAATCTTTAAGGATCTTTCAATCTCAAATAAGAATCTTTG
1 AAACTCAAATGAGAATCTTTAAGAATCTTTCAATCTCAAATAAGAATCTTTG
8139522 A
1 A
8139523 GATGTAAAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
51 28 0.57
52 21 0.43
ACGTcount: A:0.42, C:0.13, G:0.12, T:0.33
Consensus pattern (52 bp):
AAACTCAAATGAGAATCTTTAAGAATCTTTCAATCTCAAATAAGAATCTTTG
Found at i:8139516 original size:31 final size:31
Alignment explanation
Indices: 8139458--8139520 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
8139448 CGAATTCAAA
* * *
8139458 TAAGAATCTTTGAAACTTAAATGAGAATCTT
1 TAAGAATCTTTCAAACTCAAATAAGAATCTT
* *
8139489 TAAGGATCTTTCAATCTCAAATAAGAATCTT
1 TAAGAATCTTTCAAACTCAAATAAGAATCTT
8139520 T
1 T
8139521 GAGATGTAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.37
Consensus pattern (31 bp):
TAAGAATCTTTCAAACTCAAATAAGAATCTT
Found at i:8139977 original size:41 final size:41
Alignment explanation
Indices: 8139919--8140554 Score: 679
Period size: 41 Copynumber: 15.4 Consensus size: 41
8139909 GTTGATGAGT
* * *
8139919 ATTTTATTTTTCAAATGTTATGATGCCTCTGTTTAGAGGAGC
1 ATTTTATTTTCCAAA-GTTGTGGTGCCTCTGTTTAGAGGAGC
* *
8139961 ATTTTATTTTCCAATGTTGTGGTGCCTCTGTTTAGAGCAGC
1 ATTTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * *
8140002 TTTTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGAATC
1 ATTTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * *
8140043 ATTTTATTTTTCAAAAGTTGTGGTGCCTTTGTTTAAAAGAGC
1 ATTTTA-TTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
** * *
8140085 ATTTTATTTTTAAAAATTGTGGTGCCTCTGTTTATAGGAGC
1 ATTTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * *
8140126 ATTTTATTTT-CAAAGGTTGTAGTGTCTATGTTTAGATGAGC
1 ATTTTATTTTCCAAA-GTTGTGGTGCCTCTGTTTAGAGGAGC
* * *
8140167 ATTTTATTTTCCAAAGTTAT-ATGCCTCTGTTTAAAGGAGC
1 ATTTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * *
8140207 ATTTTATTTTTCAAAAGTTGTGGTGCTTTTGTTTAGATGAGC
1 ATTTTA-TTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* ** * * * *
8140249 AATTTATTTTTGAAAAGTTGTGGTACCTTTGTTTAAATGAGC
1 ATTTTA-TTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
*
8140291 ATTTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
1 ATTTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* *
8140332 ATTTTATTTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGC
1 ATTTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * * *
8140373 AATTTATTTTTCAAAGTTGTAGTGCCTCCGTTTAGAAGAGC
1 ATTTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* *
8140414 ATTTTA-TTTCAAAAGTTGTGGTGCCTCTGTTTAAAGGAGC
1 ATTTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * *
8140454 AATTTATTTTCCTAAAGTTGTGGTGCTTCTGTTTAAAGAAGC
1 ATTTTATTTTCC-AAAGTTGTGGTGCCTCTGTTTAGAGGAGC
* * * *
8140496 AATTTACTTTTTC-AAGTTGTGATGCCTTTGTTTAGAGGAGC
1 ATTTTA-TTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
8140537 A-TTTATTTTTCTCAAAGT
1 ATTTTA-TTTTC-CAAAGT
8140555 CGTTAAGCTT
Statistics
Matches: 504, Mismatches: 80, Indels: 20
0.83 0.13 0.03
Matches are distributed among these distances:
40 65 0.13
41 289 0.57
42 145 0.29
43 5 0.01
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.45
Consensus pattern (41 bp):
ATTTTATTTTCCAAAGTTGTGGTGCCTCTGTTTAGAGGAGC
Found at i:8140360 original size:247 final size:246
Alignment explanation
Indices: 8139912--8140547 Score: 818
Period size: 247 Copynumber: 2.6 Consensus size: 246
8139902 CATGATTGTT
* * * * *
8139912 GATGAGTATTTTATTTTTCAAATGTTATGATGCCTCTGTTTAGAGGAGCATTTTA-TTTTCCAAT
1 GATGAGCATTTTATTTTCCAAA-GTTATGATGCCTCTGTTTAAAGGAGCATTTTATTTTTCAAAA
* * ** *
8139976 GTTGTGGTGCCTCTGTTTAGAGCAGCTTTTTATTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGAA
65 GTTGTGGTGCTTCTGTTTAGAGAAGCAATTTATTTTT-AAAGTTGTGGTGCCTTTGTTTAGAG-A
* *
8140041 TCATTTTATTTTTCAAAAGTTGTGGTGCCTTTGTTTAAAAGAGCATTTTATTTTTAAAAATTGTG
128 GCATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAAAAGAGCATTTTATTTTTAAAAATTGTG
* * * * *
8140106 GTGCCTCTGTTTATAGGAGCATTTTA-TTTTCAAAGGTTGTAGTGTCTATGTTTA
193 ATGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAA-GTTGTAGTGCCTACGTTTA
8140160 GATGAGCATTTTATTTTCCAAAGTTAT-ATGCCTCTGTTTAAAGGAGCATTTTATTTTTCAAAAG
1 GATGAGCATTTTATTTTCCAAAGTTATGATGCCTCTGTTTAAAGGAGCATTTTATTTTTCAAAAG
* * *
8140224 TTGTGGTGCTTTTGTTTAGATG-AGCAATTTATTTTTGAAAAGTTGTGGTACCTTTGTTTAAATG
66 TTGTGGTGCTTCTGTTTAGA-GAAGCAATTTATTTTT--AAAGTTGTGGTGCCTTTGTTTAGA-G
* * * *
8140288 AGCATTTTATTTTTC-AAAGTTGTGGTGCCTCTGTTTAGAGGAGCATTTTATTTTTCAAAGTTGT
127 AGCATTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAAAAGAGCATTTTATTTTTAAAAATTGT
*
8140352 GATGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTGTAGTGCCTCCGTTTA
192 GATGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTGTAGTGCCTACGTTTA
* * * * * * *
8140407 GAAGAGCATTTTA-TTTCAAAAGTTGTGGTGCCTCTGTTTAAAGGAGCAATTTATTTTCCTAAAG
1 GATGAGCATTTTATTTTCCAAAGTTATGATGCCTCTGTTTAAAGGAGCATTTTATTTTTCAAAAG
* * *
8140471 TTGTGGTGCTTCTGTTTAAAGAAGCAATTTACTTTTTCAAGTTGTGATGCCTTTGTTTAGAGGAG
66 TTGTGGTGCTTCTGTTTAGAGAAGCAATTTA-TTTTTAAAGTTGTGGTGCCTTTGTTTAGA-GAG
8140536 CA-TTTATTTTTC
129 CATTTTATTTTTC
8140548 TCAAAGTCGT
Statistics
Matches: 341, Mismatches: 39, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
245 10 0.03
246 62 0.18
247 199 0.58
248 69 0.20
249 1 0.00
ACGTcount: A:0.24, C:0.11, G:0.20, T:0.45
Consensus pattern (246 bp):
GATGAGCATTTTATTTTCCAAAGTTATGATGCCTCTGTTTAAAGGAGCATTTTATTTTTCAAAAG
TTGTGGTGCTTCTGTTTAGAGAAGCAATTTATTTTTAAAGTTGTGGTGCCTTTGTTTAGAGAGCA
TTTTATTTTTCAAAAGTTGTGGTGCCTCTGTTTAAAAGAGCATTTTATTTTTAAAAATTGTGATG
CCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTGTAGTGCCTACGTTTA
Found at i:8141201 original size:20 final size:21
Alignment explanation
Indices: 8141161--8141204 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
8141151 GAAATTTTTA
*
8141161 ATGTGTTCTTTCTAGTTTTCG
1 ATGTGTTCTTTCTAATTTTCG
*
8141182 ATGTGTTTTTTC-AATTTTCG
1 ATGTGTTCTTTCTAATTTTCG
8141202 ATG
1 ATG
8141205 AAAATTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.14, C:0.11, G:0.18, T:0.57
Consensus pattern (21 bp):
ATGTGTTCTTTCTAATTTTCG
Found at i:8141833 original size:8 final size:8
Alignment explanation
Indices: 8141806--8141843 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
8141796 AAAGCCAAGG
8141806 AAAAA-AT
1 AAAAATAT
*
8141813 AAAAAGTAA
1 AAAAA-TAT
8141822 AAAAATAT
1 AAAAATAT
8141830 AAAAATAT
1 AAAAATAT
8141838 AAAAAT
1 AAAAAT
8141844 TTTAGAATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
7 5 0.19
8 16 0.59
9 6 0.22
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (8 bp):
AAAAATAT
Found at i:8143772 original size:18 final size:16
Alignment explanation
Indices: 8143749--8143787 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
8143739 AGTATAAAAA
*
8143749 ATTAGAGTAATTTAATT
1 ATTAGAGT-ATATAATT
8143766 GATTAGAGTATATAATT
1 -ATTAGAGTATATAATT
8143783 ATTAG
1 ATTAG
8143788 TCATAAGAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 7 0.35
18 8 0.40
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (16 bp):
ATTAGAGTATATAATT
Found at i:8144193 original size:40 final size:39
Alignment explanation
Indices: 8144149--8144249 Score: 129
Period size: 40 Copynumber: 2.6 Consensus size: 39
8144139 TGGGGATTAC
8144149 TTATTTTTTTAAAAGATTATTTAAAG-TATTATTGATCAA
1 TTATTTTTTTAAAAGATTATTTAAAGATATTATTGATC-A
* *
8144188 TTTATTTTTTTTAAAGATTATTT-AAGATGTTATTGATCA
1 -TTATTTTTTTAAAAGATTATTTAAAGATATTATTGATCA
*
8144227 --ATTTTTTTAAAAAATTATTTAAA
1 TTATTTTTTTAAAAGATTATTTAAA
8144250 ACGTTGTTTA
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
36 18 0.33
37 2 0.04
39 4 0.07
40 31 0.56
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.53
Consensus pattern (39 bp):
TTATTTTTTTAAAAGATTATTTAAAGATATTATTGATCA
Found at i:8145729 original size:13 final size:13
Alignment explanation
Indices: 8145711--8145744 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
8145701 ATGGTGCTTG
8145711 AGGGTGGCAGTGT
1 AGGGTGGCAGTGT
8145724 AGGGTGGCAGTGT
1 AGGGTGGCAGTGT
8145737 AGGGTGGC
1 AGGGTGGC
8145745 TATTAGGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.15, C:0.09, G:0.56, T:0.21
Consensus pattern (13 bp):
AGGGTGGCAGTGT
Found at i:8161819 original size:35 final size:35
Alignment explanation
Indices: 8161780--8161849 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
8161770 TATATATGGA
*
8161780 AATTAATATACTTGGCATAATTTTAAAGTATCTGC
1 AATTAATATACTTGGCACAATTTTAAAGTATCTGC
* *
8161815 AATTAATATATTTGGCCCAATTTTAAAGTATCTGC
1 AATTAATATACTTGGCACAATTTTAAAGTATCTGC
8161850 GGGCCAACGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (35 bp):
AATTAATATACTTGGCACAATTTTAAAGTATCTGC
Found at i:8165361 original size:22 final size:23
Alignment explanation
Indices: 8165336--8165382 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
8165326 ACTAATTCCC
8165336 TTAGTGTTA-TTTACTACAATAA
1 TTAGTGTTATTTTACTACAATAA
*
8165358 TTAGTGTTATTTTACTACGATAA
1 TTAGTGTTATTTTACTACAATAA
8165381 TT
1 TT
8165383 TTATCTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.49
Consensus pattern (23 bp):
TTAGTGTTATTTTACTACAATAA
Found at i:8171830 original size:44 final size:45
Alignment explanation
Indices: 8171766--8171855 Score: 105
Period size: 44 Copynumber: 2.0 Consensus size: 45
8171756 TAATCCATCC
* * *
8171766 ATTTAAATTAAATTTATTA-TTA-AAATATGAAAAATATTTTTTAAA
1 ATTTAAATAAAATATATTATTTATAAATAT--AAAATATCTTTTAAA
*
8171811 ATTT-AATAAAATATATTATTTATTAATATAAAATATCTTTTAAA
1 ATTTAAATAAAATATATTATTTATAAATATAAAATATCTTTTAAA
8171855 A
1 A
8171856 AAGATTAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
44 27 0.69
45 7 0.18
46 5 0.13
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (45 bp):
ATTTAAATAAAATATATTATTTATAAATATAAAATATCTTTTAAA
Found at i:8172298 original size:60 final size:60
Alignment explanation
Indices: 8172225--8172351 Score: 168
Period size: 60 Copynumber: 2.1 Consensus size: 60
8172215 GTAAGAATCC
* * *
8172225 ACATTGGAAAAAGAAGTACTTGGTGGAGTCCCCATGGACTTCAAGTCATATTCAACATT-A
1 ACATTGGAAAAAGAAGTACATAGTGGAGCCCCCATGGACTTCAAGTCATATTCAA-ATTGA
* ***
8172285 ACATTGGAAAAAGAAGTCCATAGTGGAGCCCCCATTTTCTTCAAGTCATATTCAAATTGA
1 ACATTGGAAAAAGAAGTACATAGTGGAGCCCCCATGGACTTCAAGTCATATTCAAATTGA
8172345 A-ATTGGA
1 ACATTGGA
8172352 TAAATGGCAC
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
59 9 0.15
60 50 0.85
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (60 bp):
ACATTGGAAAAAGAAGTACATAGTGGAGCCCCCATGGACTTCAAGTCATATTCAAATTGA
Found at i:8173198 original size:16 final size:16
Alignment explanation
Indices: 8173179--8173248 Score: 63
Period size: 16 Copynumber: 4.4 Consensus size: 16
8173169 TAATAATAGT
8173179 TAATATTATCAAATGA
1 TAATATTATCAAATGA
* **
8173195 TAATATCA-C-CTTGA
1 TAATATTATCAAATGA
*
8173209 TAATATAATCACTAATGA
1 TAATATTATCA--AATGA
*
8173227 TAATATTAACAAATGA
1 TAATATTATCAAATGA
8173243 TAATAT
1 TAATAT
8173249 CACCTACCTT
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
14 10 0.24
15 2 0.05
16 18 0.43
18 12 0.29
ACGTcount: A:0.49, C:0.10, G:0.06, T:0.36
Consensus pattern (16 bp):
TAATATTATCAAATGA
Found at i:8173532 original size:42 final size:42
Alignment explanation
Indices: 8173469--8173553 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
8173459 ATACCAAGAT
**
8173469 CACTTATTTTGCTTGCAATGTAACTCAACTTAGCCACAACGA
1 CACTTATTTCCCTTGCAATGTAACTCAACTTAGCCACAACGA
* *
8173511 CACTTATTTCCCTTG-ATATGTAGCTCAACTTAGCCAGAACGA
1 CACTTATTTCCCTTGCA-ATGTAACTCAACTTAGCCACAACGA
8173553 C
1 C
8173554 CAGGTGCAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
41 1 0.03
42 37 0.97
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (42 bp):
CACTTATTTCCCTTGCAATGTAACTCAACTTAGCCACAACGA
Found at i:8176393 original size:16 final size:16
Alignment explanation
Indices: 8176368--8176400 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8176358 TTTTAACGGA
*
8176368 TAATATATAAAATAAT
1 TAATACATAAAATAAT
8176384 TAATACATAAAATAAT
1 TAATACATAAAATAAT
8176400 T
1 T
8176401 TAATGGCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
TAATACATAAAATAAT
Found at i:8184114 original size:47 final size:47
Alignment explanation
Indices: 8184024--8184120 Score: 142
Period size: 46 Copynumber: 2.1 Consensus size: 47
8184014 TTACAAGAAT
* * *
8184024 AAAAAATGAAAAACCTTTATAGTTATCTTTAAAATATAAAAAAGAGA
1 AAAAAATGAAAAACCTTTATAGTTACCGTAAAAATATAAAAAAGAGA
*
8184071 AAAAAATG-GAAACCTTTATAGTTACCGTAAAAATATAATAAAAGAGA
1 AAAAAATGAAAAACCTTTATAGTTACCGTAAAAATATAA-AAAAGAGA
8184118 AAA
1 AAA
8184121 TAATAATAAC
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 26 0.58
47 19 0.42
ACGTcount: A:0.58, C:0.07, G:0.10, T:0.25
Consensus pattern (47 bp):
AAAAAATGAAAAACCTTTATAGTTACCGTAAAAATATAAAAAAGAGA
Found at i:8187102 original size:2 final size:2
Alignment explanation
Indices: 8187095--8187129 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
8187085 TAATTATTTC
8187095 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8187130 AACCTTAGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8187601 original size:11 final size:10
Alignment explanation
Indices: 8187585--8187627 Score: 54
Period size: 11 Copynumber: 4.3 Consensus size: 10
8187575 TATCAAGTCA
8187585 TTTATTTCCTT
1 TTTATTT-CTT
8187596 TTTA-TT-TT
1 TTTATTTCTT
8187604 TTTATTTACTT
1 TTTATTT-CTT
8187615 TTTATTTCTT
1 TTTATTTCTT
8187625 TTT
1 TTT
8187628 TCCTTTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 6 0.21
9 2 0.07
10 8 0.28
11 13 0.45
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTATTTCTT
Found at i:8187637 original size:19 final size:19
Alignment explanation
Indices: 8187585--8187635 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
8187575 TATCAAGTCA
*
8187585 TTTATTTCCTTTTTATTTT
1 TTTATTTCCTTTTTATTTC
*
8187604 TTTATTTACTTTTTATTTC
1 TTTATTTCCTTTTTATTTC
8187623 TTT-TTTCCTTTTT
1 TTTATTTCCTTTTT
8187636 TAATATTCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 9 0.31
19 20 0.69
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTATTTCCTTTTTATTTC
Found at i:8187652 original size:18 final size:18
Alignment explanation
Indices: 8187631--8187674 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
8187621 TCTTTTTTCC
8187631 TTTTTTAATA-TTCAATAA
1 TTTTTTAATATTTCAA-AA
* *
8187649 TTTTTTTATATTTTAAAA
1 TTTTTTAATATTTCAAAA
8187667 TTTTTTAA
1 TTTTTTAA
8187675 AATGAGGCTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTTTAATATTTCAAAA
Found at i:8187856 original size:24 final size:24
Alignment explanation
Indices: 8187820--8187865 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
8187810 AATATAAATA
8187820 TATATTTTAATATTCAT-TTAATTT
1 TATATTTTAATATT-ATATTAATTT
8187844 TATA-TTTATATATTATATTAAT
1 TATATTTTA-ATATTATATTAAT
8187866 AAAATTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
TATATTTTAATATTATATTAATTT
Found at i:8189683 original size:28 final size:29
Alignment explanation
Indices: 8189624--8189683 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
8189614 TTAACTTGAT
**
8189624 TTTATATATATTAATTAATAAAATTATTA
1 TTTATATATATTAATTAATAAAATTAAAA
*
8189653 TTTA-ATATTTTAATTTAA-AAAATTAAAA
1 TTTATATATATTAA-TTAATAAAATTAAAA
8189681 TTT
1 TTT
8189684 TAAGCTCAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (29 bp):
TTTATATATATTAATTAATAAAATTAAAA
Found at i:8190602 original size:16 final size:16
Alignment explanation
Indices: 8190580--8190614 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
8190570 ATTTTAGTAT
*
8190580 TTATTTAATT-TATAA
1 TTATTTTATTATATAA
8190595 TTATTTTATTATATAA
1 TTATTTTATTATATAA
8190611 TTAT
1 TTAT
8190615 ATATCATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.50
16 9 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
TTATTTTATTATATAA
Found at i:8192583 original size:2 final size:2
Alignment explanation
Indices: 8192576--8192611 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8192566 CTAAAAGCTG
*
8192576 AT AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8192612 TTTTTTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8200494 original size:18 final size:20
Alignment explanation
Indices: 8200454--8200496 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
8200444 GCAACGAATA
*
8200454 TTTAAAAAAAAGGATAAATT
1 TTTAAAAAAAAGGATAAACT
*
8200474 TTTAAAAACAA-GA-AAACT
1 TTTAAAAAAAAGGATAAACT
8200492 TTTAA
1 TTTAA
8200497 GTCTGAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 9 0.43
19 2 0.10
20 10 0.48
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (20 bp):
TTTAAAAAAAAGGATAAACT
Found at i:8200739 original size:53 final size:53
Alignment explanation
Indices: 8200674--8200781 Score: 162
Period size: 53 Copynumber: 2.0 Consensus size: 53
8200664 TTAACGTCTT
* * *
8200674 TATGGATGTGTATGTTGGAGTGGACTATAAGAGACTAAGAGGGTCCACATAAG
1 TATGGATATGTATGTTGGAGTGGACTAAAAGAGACTAAGAGAGTCCACATAAG
* * *
8200727 TATGGATATGTATGTTGGAGTGGACTAAAAGATATTGAGAGAGTCCACATAAG
1 TATGGATATGTATGTTGGAGTGGACTAAAAGAGACTAAGAGAGTCCACATAAG
8200780 TA
1 TA
8200782 ATGGTGTATA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (53 bp):
TATGGATATGTATGTTGGAGTGGACTAAAAGAGACTAAGAGAGTCCACATAAG
Found at i:8202140 original size:236 final size:234
Alignment explanation
Indices: 8201557--8202296 Score: 870
Period size: 236 Copynumber: 3.1 Consensus size: 234
8201547 TTAAGTAATG
* * * *
8201557 TTATAATTTTGACACCAATTTAAAATTTTATTTGTGATGAATTTTTTCTGACAGATTTTCTGTGA
1 TTATAATTTTGTCACCAATTTAAAATTTTATTTGTGATGAATTTTTTTTGATAGATTTTATGTGA
* * * * * * * *
8201622 CACTATTAATTTTTATCACAAATTGAACATTTTAGTTCACTATTAATAACATTGTAATTTCATCA
66 TATTATTAATTTTTGTCACAAATTGAATATTTTAGTTAACTATTAATGACATTATAATTTCATTA
* * * * *
8201687 CATCAAAATATGGTATTATATGATGATAATATAATTGTCACCAAAATTTACCACCAAATTTATTT
131 CATCAATATATGGTGTTATATGATGATAACATAAATGTCACC-AAATTTACTACCAAATTTATTT
* * * * *
8201752 GGTGGGAAATTTTTTAGTGACGTTTTTCATTTTGGGTGACG
195 GGTGAG-AATTTTTTTGTGACGTTTTTAATTTTAGGTGACA
* * ** * *
8201793 TTATAATTTTATCACCAACTTAAAATTTTATTTGTGACAAAATTTTTTT-ATAGATTTTATGTGG
1 TTATAATTTTGTCACCAATTTAAAATTTTATTTGTGATGAATTTTTTTTGATAGATTTTATGTGA
* * * * * **
8201857 TATTATTAAGTTTTGTCACAAATTGAGTACTTTAGTTAACCATTAATGACATTACAATTTTGTTA
66 TATTATTAATTTTTGTCACAAATTGAATATTTTAGTTAACTATTAATGACATTATAATTTCATTA
* * * * *
8201922 TATCAATGTATGGTGTTATATGATGATAACATAAATGTTATCAAATTTCACTGCCAAATTTATTT
131 CATCAATATATGGTGTTATATGATGATAACATAAATGTCACCAAATTT-ACTACCAAATTTATTT
* *
8201987 GGTGAGAATTTTTTTGTGATGGTTTTAATTTTAGGTGACA
195 GGTGAGAATTTTTTTGTGACGTTTTTAATTTTAGGTGACA
* * * * *
8202027 TTATAATTTTCTCACTAATTTAAAATTTTATCTGTGATGAATTTATTTTTGATAAATTTTAGGTG
1 TTATAATTTTGTCACCAATTTAAAATTTTATTTGTGATGAATTT-TTTTTGATAGATTTTATGTG
* * * *
8202092 ATATTATTAATTTTTGTCACAAATTAAATATTTTAGCTAATTATTAATGATATTATAATTTCATT
65 ATATTATTAATTTTTGTCACAAATTGAATATTTTAGTTAACTATTAATGACATTATAATTTCATT
* ** * *
8202157 ACGTCAATATATGGTGTTATATGACAATAACATAAATGTCACCAAGTTTTATTACCAAATTTATT
130 ACATCAATATATGGTGTTATATGATGATAACATAAATGTCACCAA-ATTTACTACCAAATTTATT
* *
8202222 TGGTGAAAAATTTTTTTGTGACGTTTTTAATTTTAGGAGACA
194 TGGTG-AGAATTTTTTTGTGACGTTTTTAATTTTAGGTGACA
** *
8202264 TTATAATTTTGTCATTAATTTAAAACTTTATTT
1 TTATAATTTTGTCACCAATTTAAAATTTTATTT
8202297 TCATAACATA
Statistics
Matches: 418, Mismatches: 81, Indels: 9
0.82 0.16 0.02
Matches are distributed among these distances:
234 71 0.17
235 120 0.29
236 163 0.39
237 64 0.15
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (234 bp):
TTATAATTTTGTCACCAATTTAAAATTTTATTTGTGATGAATTTTTTTTGATAGATTTTATGTGA
TATTATTAATTTTTGTCACAAATTGAATATTTTAGTTAACTATTAATGACATTATAATTTCATTA
CATCAATATATGGTGTTATATGATGATAACATAAATGTCACCAAATTTACTACCAAATTTATTTG
GTGAGAATTTTTTTGTGACGTTTTTAATTTTAGGTGACA
Found at i:8203478 original size:17 final size:17
Alignment explanation
Indices: 8203438--8203488 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
8203428 CAAAAATACT
* *
8203438 AAAAAAATACATAAATA
1 AAAAAAATACAAAAAAA
*
8203455 AATAAAATACAAAAAAA
1 AAAAAAATACAAAAAAA
8203472 GAAAAAAATATCAAAAA
1 -AAAAAAATA-CAAAAA
8203489 CCAAAGCTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 14 0.50
18 8 0.29
19 6 0.21
ACGTcount: A:0.78, C:0.06, G:0.02, T:0.14
Consensus pattern (17 bp):
AAAAAAATACAAAAAAA
Found at i:8204180 original size:14 final size:14
Alignment explanation
Indices: 8204163--8204189 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8204153 TTTTTTTCCA
8204163 TTTTTTATTTTTAT
1 TTTTTTATTTTTAT
8204177 TTTTTTATTTTTA
1 TTTTTTATTTTTA
8204190 AATTAACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTTATTTTTAT
Found at i:8204509 original size:41 final size:41
Alignment explanation
Indices: 8204346--8204981 Score: 677
Period size: 41 Copynumber: 15.5 Consensus size: 41
8204336 TACTCAGACT
* * * *
8204346 CTTTGAATAACATAAAA-ACTCCTATAAACAGAGGCTCCATGA
1 CTTTGAA-AA-ATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* * *
8204388 TTTTGAAAAAGTAAACAAAGCTCCTCTAAACAAAGGCACAATGA
1 CTTTGAAAAA-T-AA-AAGGCTCCTCTAAACAGAGGCACAATGA
* * *
8204432 CTTTGGAAAATAAAAAGCT-CTCTAAACAGAGCCACAATGA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
*
8204472 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATAA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* * * **
8204513 CTTTGGAAAATAAAAGGCTCCTTTAAACAAAGGCACAACAA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* *
8204554 CTTTGAAATATAAAAGGATCCTCTAAACAGAGGCACAATGA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* * * * * * *
8204595 CTTTAAAAAATAAAA-ACTCTTCTCAATAGAGGTATAATGA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* * *
8204635 CTTTGGAAAATAAAACGCTCATCTAAACAGAGGCACAATGA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* * * *
8204676 TTTTGAAAAATAAAAGGCTCCTCTAAATAGAGGTACAACGA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* * *
8204717 CTTT-AGAAAATAAAAGGCTCTTTTAAACAGAGGCGCAATGA
1 CTTTGA-AAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* * * * *
8204758 TTTTGAAAATTAAAAGGCTCCTTTAAACAGAGGCATAATAA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* * * **
8204799 CTTTGAAAAATAAAAGGCTCTTCTAAACAGAAGTACAACAA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* * *
8204840 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAAGCATAATAA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* * **
8204881 CTTTGAAAAATAAAAAGCTCCTCTAAACAGAGGTACAACAA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
* * **
8204922 CTTTGAAAAATAAAAGGATCCTCTAAATAGAGGCACAACAA
1 CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
*
8204963 CTTTAAAAAATAAAAGGCT
1 CTTTGAAAAATAAAAGGCT
8204982 TTAGAAAATA
Statistics
Matches: 501, Mismatches: 85, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
40 69 0.14
41 390 0.78
42 11 0.02
43 3 0.01
44 28 0.06
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.22
Consensus pattern (41 bp):
CTTTGAAAAATAAAAGGCTCCTCTAAACAGAGGCACAATGA
Found at i:8204989 original size:17 final size:17
Alignment explanation
Indices: 8204963--8204995 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8204953 GGCACAACAA
8204963 CTTTAAAAAATAAAAGG
1 CTTTAAAAAATAAAAGG
*
8204980 CTTTAGAAAATAAAAG
1 CTTTAAAAAATAAAAG
8204996 ACTCCTCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.24
Consensus pattern (17 bp):
CTTTAAAAAATAAAAGG
Found at i:8204993 original size:58 final size:57
Alignment explanation
Indices: 8204928--8205036 Score: 148
Period size: 58 Copynumber: 1.9 Consensus size: 57
8204918 ACAACTTTGA
* * *
8204928 AAAATAAAAGGA-TCCTCTAAATAGAGGCACAACAACTTTAAAAAATAAAAGGCTTTAG
1 AAAATAAAA-GACTCCTCTAAACAAAGACACAACAACTTT-AAAAATAAAAGGCTTTAG
**
8204986 AAAATAAAAGACTCCTCTAAACAAAGACACAATGACTTTAAAAATAAAAGG
1 AAAATAAAAGACTCCTCTAAACAAAGACACAACAACTTTAAAAATAAAAGG
8205037 TCCATCTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
57 14 0.31
58 31 0.69
ACGTcount: A:0.54, C:0.15, G:0.12, T:0.19
Consensus pattern (57 bp):
AAAATAAAAGACTCCTCTAAACAAAGACACAACAACTTTAAAAATAAAAGGCTTTAG
Found at i:8205060 original size:98 final size:99
Alignment explanation
Indices: 8204887--8205075 Score: 276
Period size: 98 Copynumber: 1.9 Consensus size: 99
8204877 ATAACTTTGA
* **
8204887 AAAATAAAAAGCTCCTCTAAACAGAGGTACAACAACTTTGAAAAATAAAAGGATCCTCTAAATAG
1 AAAATAAAAAGCTCCTCTAAACAAAGACACAACAACTTTGAAAAATAAAAGGATCCTCTAAATAG
8204952 AGGCACAACAACTTTAAAAAATAAAAGGCTTTAG
66 AGGCACAACAACTTTAAAAAATAAAAGGCTTTAG
**
8204986 AAAAT-AAAAGACTCCTCTAAACAAAGACACAATGACTTT-AAAAATAAAAGG-TCCATCTAAAT
1 AAAATAAAAAG-CTCCTCTAAACAAAGACACAACAACTTTGAAAAATAAAAGGATCC-TCTAAAT
* *
8205048 AGAGGCATAACAACTTTGAAAAATAAAA
64 AGAGGCACAACAACTTTAAAAAATAAAA
8205076 AGCTCCTTAA
Statistics
Matches: 81, Mismatches: 7, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
97 3 0.04
98 50 0.62
99 28 0.35
ACGTcount: A:0.52, C:0.16, G:0.12, T:0.20
Consensus pattern (99 bp):
AAAATAAAAAGCTCCTCTAAACAAAGACACAACAACTTTGAAAAATAAAAGGATCCTCTAAATAG
AGGCACAACAACTTTAAAAAATAAAAGGCTTTAG
Found at i:8205561 original size:25 final size:24
Alignment explanation
Indices: 8205531--8205658 Score: 124
Period size: 25 Copynumber: 5.5 Consensus size: 24
8205521 TATTCGAATT
8205531 ATTCTTAAAGATTCTCATTTGAAA
1 ATTCTTAAAGATTCTCATTTGAAA
*
8205555 ATGTCTTAAAGATTCTGATTT-AAA
1 AT-TCTTAAAGATTCTCATTTGAAA
* *
8205579 A--CTCAAAGGTTCTCATTTGAAA
1 ATTCTTAAAGATTCTCATTTGAAA
* *
8205601 ATGTTTTAAAGATTCTCATTT-AAG
1 AT-TCTTAAAGATTCTCATTTGAAA
*
8205625 A-T-TTAAAAATTCTCATTTGAGAA
1 ATTCTTAAAGATTCTCATTTGA-AA
*
8205648 TTTCTTAAAGA
1 ATTCTTAAAGA
8205659 GACTCAAAAG
Statistics
Matches: 83, Mismatches: 12, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
21 29 0.35
22 6 0.07
23 1 0.01
24 10 0.12
25 37 0.45
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.41
Consensus pattern (24 bp):
ATTCTTAAAGATTCTCATTTGAAA
Found at i:8205595 original size:46 final size:46
Alignment explanation
Indices: 8205537--8205800 Score: 237
Period size: 46 Copynumber: 6.0 Consensus size: 46
8205527 AATTATTCTT
*
8205537 AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTGATTTAAAACTC
1 AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAAAACTC
* * * * *
8205583 AAAGGTTCTCATTTGAAAATGTTTTAAAGATTCTCATTTAAGATTT
1 AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAAAACTC
* * * **
8205629 AAAAATTCTCATTTGAGAATTTCTTAAAGAGACTC-------A---
1 AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAAAACTC
* * *
8205665 AAAG-TTCTCATTTGCAAACGTCTTAAAGATTCTCATTTAAGACTC
1 AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAAAACTC
* * * * *
8205710 AAAGATTTTTATTTTAGAATTTCTTAAAGA-TCTCATTTAAAACTC
1 AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAAAACTC
* * *
8205755 AAAGATTCTCATTTGAGAATTTCTTAAAGATTCACATTTAAGAACT
1 AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAA-AACT
8205801 TAAAAATTAA
Statistics
Matches: 173, Mismatches: 32, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
35 24 0.14
36 3 0.02
39 1 0.01
42 1 0.01
45 45 0.26
46 95 0.55
47 4 0.02
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.39
Consensus pattern (46 bp):
AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAAAACTC
Found at i:8205631 original size:21 final size:22
Alignment explanation
Indices: 8205535--8205642 Score: 76
Period size: 21 Copynumber: 4.7 Consensus size: 22
8205525 CGAATTATTC
*
8205535 TTAAAGATTCTCATTTGAAAATGT
1 TTAAAGATTCTCATTT-AAAA-AT
* *
8205559 CTTAAAGATTCTGATTT-AAAAC
1 -TTAAAGATTCTCATTTAAAAAT
* * *
8205581 TCAAAGGTTCTCATTTGAAAATGTT
1 TTAAAGATTCTCATTT-AAAA--AT
*
8205606 TTAAAGATTCTCATTT-AAGAT
1 TTAAAGATTCTCATTTAAAAAT
*
8205627 TTAAAAATTCTCATTT
1 TTAAAGATTCTCATTT
8205643 GAGAATTTCT
Statistics
Matches: 66, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
21 29 0.44
23 8 0.12
25 29 0.44
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (22 bp):
TTAAAGATTCTCATTTAAAAAT
Found at i:8205664 original size:81 final size:81
Alignment explanation
Indices: 8205579--8205739 Score: 232
Period size: 81 Copynumber: 2.0 Consensus size: 81
8205569 CTGATTTAAA
* * * * *
8205579 ACTCAAAGGTTCTCATTTGAAAATGTTTTAAAGATTCTCATTTAAGATTTAAAAATTCTCATTTG
1 ACTCAAAAGTTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAGACTCAAAAATTCTCATTTG
8205644 AGAATTTCTTAAAGAG
66 AGAATTTCTTAAAGAG
* * * * *
8205660 ACTCAAAAGTTCTCATTTGCAAACGTCTTAAAGATTCTCATTTAAGACTCAAAGATTTTTATTTT
1 ACTCAAAAGTTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAGACTCAAAAATTCTCATTTG
8205725 AGAATTTCTTAAAGA
66 AGAATTTCTTAAAGA
8205740 TCTCATTTAA
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 70 1.00
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (81 bp):
ACTCAAAAGTTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAGACTCAAAAATTCTCATTTG
AGAATTTCTTAAAGAG
Found at i:8205713 original size:21 final size:21
Alignment explanation
Indices: 8205689--8205768 Score: 72
Period size: 21 Copynumber: 3.7 Consensus size: 21
8205679 CAAACGTCTT
8205689 AAAGATTCTCATTTAAGACTC
1 AAAGATTCTCATTTAAGACTC
* * * *
8205710 AAAGATTTTTATTTTAGAATTTCTT
1 AAAGATTCTCATTTAAG-A---CTC
*
8205735 AAAGA-TCTCATTTAAAACTC
1 AAAGATTCTCATTTAAGACTC
8205755 AAAGATTCTCATTT
1 AAAGATTCTCATTT
8205769 GAGAATTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
20 7 0.16
21 22 0.49
22 1 0.02
23 1 0.02
24 7 0.16
25 7 0.16
ACGTcount: A:0.38, C:0.14, G:0.07, T:0.41
Consensus pattern (21 bp):
AAAGATTCTCATTTAAGACTC
Found at i:8205737 original size:127 final size:127
Alignment explanation
Indices: 8205537--8205784 Score: 347
Period size: 127 Copynumber: 2.0 Consensus size: 127
8205527 AATTATTCTT
* * *
8205537 AAAGATTCTCATTTGAAAATGTCTTAAAGATTCTGATTTAAAACTCAAAGGTTCTCATTTGAAAA
1 AAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAAA
* * *
8205602 TGTTTTAAAGATTCTCATTTAAGATTTAAAAATTCTCATTTGAGAATTTCTTAAAGAGACTCA
66 TGTTTTAAAGA-TCTCATTTAAAACTCAAAAATTCTCATTTGAGAATTTCTTAAAGAGACTCA
* * * * * *
8205665 AAAG-TTCTCATTTGCAAACGTCTTAAAGATTCTCATTTAAGACTCAAAGATTTTTATTTTAGAA
1 AAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAAA
*
8205729 T-TTCTTAAAGATCTCATTTAAAACTCAAAGATTCTCATTTGAGAATTTCTTAAAGA
66 TGTT-TTAAAGATCTCATTTAAAACTCAAAAATTCTCATTTGAGAATTTCTTAAAGA
8205785 TTCACATTTA
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
126 43 0.41
127 59 0.56
128 4 0.04
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.39
Consensus pattern (127 bp):
AAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAAACTCAAAGATTCTCATTTGAAAA
TGTTTTAAAGATCTCATTTAAAACTCAAAAATTCTCATTTGAGAATTTCTTAAAGAGACTCA
Found at i:8205758 original size:45 final size:46
Alignment explanation
Indices: 8205660--8205800 Score: 171
Period size: 45 Copynumber: 3.1 Consensus size: 46
8205650 TCTTAAAGAG
** *
8205660 ACTCAAA-AGTTCTCATTTGCA-AACGTCTTAAAGATTCTCATTTAAG
1 ACTCAAAGA-TTCTCATTTG-AGAATTTCTTAAAGATTCTCATTTAAA
* * *
8205706 ACTCAAAGATTTTTATTTTAGAATTTCTTAAAGA-TCTCATTTAAA
1 ACTCAAAGATTCTCATTTGAGAATTTCTTAAAGATTCTCATTTAAA
*
8205751 ACTCAAAGATTCTCATTTGAGAATTTCTTAAAGATTCACATTTAAGA
1 ACTCAAAGATTCTCATTTGAGAATTTCTTAAAGATTCTCATTTAA-A
8205798 ACT
1 ACT
8205801 TAAAAATTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
45 42 0.52
46 34 0.42
47 5 0.06
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.38
Consensus pattern (46 bp):
ACTCAAAGATTCTCATTTGAGAATTTCTTAAAGATTCTCATTTAAA
Found at i:8206321 original size:79 final size:79
Alignment explanation
Indices: 8206183--8206338 Score: 170
Period size: 79 Copynumber: 2.0 Consensus size: 79
8206173 AACAAGTTTC
* ** * * * * **
8206183 ATCAACTGATCCTCATTATTTTCATCATTTGATCACCATTTATAGGCTTCTTAGTACTAG-CAAT
1 ATCAACTGATCCACATTATGGTCATCACTCGATCACCATTCACAGGCTTCTTAACACTAGTC-AT
*
8206247 TTTAGAATAAATTCT
65 TTCAGAATAAATTCT
* * *
8206262 ATCAATTGATCCACATTATGGTCATCACTCGATTACCATTCACAGGTTTCTTAACACTAGTCATT
1 ATCAACTGATCCACATTATGGTCATCACTCGATCACCATTCACAGGCTTCTTAACACTAGTCATT
*
8206327 TCAGAATGAATT
66 TCAGAATAAATT
8206339 TCATCCACCG
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
79 61 0.98
80 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (79 bp):
ATCAACTGATCCACATTATGGTCATCACTCGATCACCATTCACAGGCTTCTTAACACTAGTCATT
TCAGAATAAATTCT
Found at i:8206942 original size:4 final size:4
Alignment explanation
Indices: 8206933--8207011 Score: 53
Period size: 4 Copynumber: 20.0 Consensus size: 4
8206923 GAGTCTTCAT
* *
8206933 TTTC TTTC TTT- TTCATC TTT- TTTC ATTTT TTTA TTT- TTTC TTATC
1 TTTC TTTC TTTC TT--TC TTTC TTTC -TTTC TTTC TTTC TTTC TT-TC
8206978 TTT- TTAT- TTT- TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TT-TC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
8207012 CCTCATTATT
Statistics
Matches: 64, Mismatches: 2, Indels: 18
0.76 0.02 0.21
Matches are distributed among these distances:
3 14 0.22
4 40 0.62
5 8 0.12
6 2 0.03
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:8206959 original size:26 final size:27
Alignment explanation
Indices: 8206928--8206998 Score: 74
Period size: 26 Copynumber: 2.6 Consensus size: 27
8206918 AATTTGAGTC
8206928 TTCATTTTCTTTCTTTTTC-ATCTTTT
1 TTCATTTTCTTTCTTTTTCTATCTTTT
*
8206954 TTCATTTT-TTTATTTTTTCTTATCTTTT
1 TTCATTTTCTTT-CTTTTTC-TATCTTTT
**
8206982 TATTTTTTTCTTTCTTT
1 T-TCATTTTCTTTCTTT
8206999 CTTTCTTTCT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
25 3 0.08
26 14 0.39
28 8 0.22
29 8 0.22
30 3 0.08
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.77
Consensus pattern (27 bp):
TTCATTTTCTTTCTTTTTCTATCTTTT
Found at i:8206971 original size:18 final size:17
Alignment explanation
Indices: 8206939--8206990 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
8206929 TCATTTTCTT
*
8206939 TCTTTTTCATCTTTTTTCA
1 TCTTTTT-AT-TTTTTTTA
*
8206958 TTTTTTTATTTTTTCTTA
1 TCTTTTTATTTTTT-TTA
8206976 TCTTTTTATTTTTTT
1 TCTTTTTATTTTTTT
8206991 CTTTCTTTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 6 0.21
18 17 0.59
19 6 0.21
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.79
Consensus pattern (17 bp):
TCTTTTTATTTTTTTTA
Found at i:8206997 original size:18 final size:18
Alignment explanation
Indices: 8206932--8206998 Score: 84
Period size: 19 Copynumber: 3.7 Consensus size: 18
8206922 TGAGTCTTCA
8206932 TTTTCTTTCTTTTTCATCTT
1 TTTTCTTTCTTTTT-AT-TT
*
8206952 TTTTCATT-TTTTTA-TT
1 TTTTCTTTCTTTTTATTT
8206968 TTTTCTTATCTTTTTATTT
1 TTTTCTT-TCTTTTTATTT
8206987 TTTTCTTTCTTT
1 TTTTCTTTCTTT
8206999 CTTTCTTTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
16 8 0.19
17 1 0.02
18 12 0.29
19 14 0.33
20 7 0.17
ACGTcount: A:0.07, C:0.13, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTCTTTCTTTTTATTT
Found at i:8207009 original size:16 final size:15
Alignment explanation
Indices: 8206948--8207011 Score: 60
Period size: 16 Copynumber: 4.1 Consensus size: 15
8206938 TTCTTTTTCA
*
8206948 TCTTTTTTCATTTTTT
1 TCTTTTTTC-TTTCTT
*
8206964 TATTTTTTCTTATCTT
1 TCTTTTTTCTT-TCTT
8206980 T-TTATTTT-TTTCTT
1 TCTT-TTTTCTTTCTT
8206994 TCTTTCTTTCTTTCTT
1 TCTTT-TTTCTTTCTT
8207010 TC
1 TC
8207012 CCTCATTATT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
14 6 0.15
15 11 0.27
16 24 0.59
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (15 bp):
TCTTTTTTCTTTCTT
Found at i:8207392 original size:15 final size:14
Alignment explanation
Indices: 8207369--8207398 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
8207359 ATAGCATTTA
8207369 TTTTTCTTTTTTTT
1 TTTTTCTTTTTTTT
8207383 TTTTTACTTTTTTTT
1 TTTTT-CTTTTTTTT
8207398 T
1 T
8207399 CTTTGAGACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.03, C:0.07, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTTCTTTTTTTT
Found at i:8211751 original size:9 final size:10
Alignment explanation
Indices: 8211699--8211755 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
8211689 TAAATCATGC
8211699 AAAAATACTAAA
1 AAAAATAC--AA
*
8211711 AAAAAAACAA
1 AAAAATACAA
* *
8211721 ACACATA-AA
1 AAAAATACAA
*
8211730 TAAAATACAA
1 AAAAATACAA
8211740 AAAAATACAA
1 AAAAATACAA
8211750 AAAAAT
1 AAAAAT
8211756 GAAATGGCTA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
9 6 0.17
10 23 0.64
12 7 0.19
ACGTcount: A:0.77, C:0.11, G:0.00, T:0.12
Consensus pattern (10 bp):
AAAAATACAA
Found at i:8212140 original size:20 final size:20
Alignment explanation
Indices: 8212092--8212128 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8212082 TTGAATGTTT
8212092 TACCGAAAACTAGGAAAAGC
1 TACCGAAAACTAGGAAAAGC
*
8212112 TATCGAAAACTA-GAAAA
1 TACCGAAAACTAGGAAAA
8212129 TTTCACCGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.54, C:0.16, G:0.16, T:0.14
Consensus pattern (20 bp):
TACCGAAAACTAGGAAAAGC
Found at i:8212917 original size:21 final size:20
Alignment explanation
Indices: 8212892--8212940 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
8212882 CAGTAAAAAA
*
8212892 AATTTTTGTGATTTTTTTTTT
1 AATTTTTGTGA-CTTTTTTTT
*
8212913 AATTTTAGGTGACTTTTTTTT
1 AATTTT-TGTGACTTTTTTTT
8212934 -ATTTTTG
1 AATTTTTG
8212941 AGTTAACTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 1 0.04
20 5 0.21
21 14 0.58
22 4 0.17
ACGTcount: A:0.16, C:0.02, G:0.12, T:0.69
Consensus pattern (20 bp):
AATTTTTGTGACTTTTTTTT
Found at i:8214547 original size:2 final size:2
Alignment explanation
Indices: 8214540--8214579 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
8214530 TAGGGCAAGC
* *
8214540 AT AT AT AT AT AT TT AT AT TT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8214580 TACACACACG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
AT
Found at i:8224837 original size:36 final size:36
Alignment explanation
Indices: 8224790--8224862 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
8224780 AGTGGGAGTG
8224790 TTATCTGATCATATACGTAATGAAGGGATAGAAGGC
1 TTATCTGATCATATACGTAATGAAGGGATAGAAGGC
8224826 TTATCTGATCATATACGTAATGAAGGGATAGAAGGC
1 TTATCTGATCATATACGTAATGAAGGGATAGAAGGC
8224862 T
1 T
8224863 ATGTTATTAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.29
Consensus pattern (36 bp):
TTATCTGATCATATACGTAATGAAGGGATAGAAGGC
Found at i:8227672 original size:47 final size:47
Alignment explanation
Indices: 8227584--8227674 Score: 123
Period size: 46 Copynumber: 1.9 Consensus size: 47
8227574 TTAAAGAATA
* *
8227584 AAAAAAAAAGAAAAACCTTTATAGCTTATCTTTAAATATAAAAAGAG
1 AAAAAAAAAGAAAAACCTTTATAGCTTAACTTAAAATATAAAAAGAG
*
8227631 AAAAAAATAG-AAAACCTTTATAG-TTAACTTAACAATAATAAAAA
1 AAAAAAAAAGAAAAACCTTTATAGCTTAACTTAA-AAT-ATAAAAA
8227675 AAAAGAGAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
45 7 0.18
46 16 0.41
47 16 0.41
ACGTcount: A:0.59, C:0.09, G:0.07, T:0.25
Consensus pattern (47 bp):
AAAAAAAAAGAAAAACCTTTATAGCTTAACTTAAAATATAAAAAGAG
Done.