Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 44 of 100
Found at i:8228363 original size:22 final size:22
Alignment explanation
Indices: 8228337--8228380 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8228327 GACTTTCACA
8228337 AACTTTACTTATAGAATTTCAT
1 AACTTTACTTATAGAATTTCAT
*
8228359 AACTTTATTTATAGAATTTCAT
1 AACTTTACTTATAGAATTTCAT
8228381 GTTAGTCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.48
Consensus pattern (22 bp):
AACTTTACTTATAGAATTTCAT
Found at i:8230078 original size:2 final size:2
Alignment explanation
Indices: 8230073--8230100 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8230063 TTTTTTTGGT
8230073 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8230101 AAATAGCTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8230948 original size:24 final size:24
Alignment explanation
Indices: 8230916--8230965 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
8230906 TAAACAAAAA
8230916 AACATCAACAATTGCTTCTTCATT
1 AACATCAACAATTGCTTCTTCATT
8230940 AACATCAACAATTGCTTCTTCATT
1 AACATCAACAATTGCTTCTTCATT
8230964 AA
1 AA
8230966 GCCTATGCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (24 bp):
AACATCAACAATTGCTTCTTCATT
Found at i:8231167 original size:20 final size:20
Alignment explanation
Indices: 8231130--8231166 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
8231120 ATTTTTTGTA
8231130 AAAATAAATAAATTAAAATT
1 AAAATAAATAAATTAAAATT
*
8231150 AAAATTAAT-AATTAAAA
1 AAAATAAATAAATTAAAA
8231167 AATCTCATCG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (20 bp):
AAAATAAATAAATTAAAATT
Found at i:8231231 original size:15 final size:16
Alignment explanation
Indices: 8231208--8231249 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
8231198 TAAATATATT
*
8231208 TAAATATATTTTTTAA
1 TAAAAATATTTTTTAA
*
8231224 -ATAAATATTTTTTAA
1 TAAAAATATTTTTTAA
8231239 TAAAAATATTT
1 TAAAAATATTT
8231250 AAAGAGTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TAAAAATATTTTTTAA
Found at i:8231342 original size:21 final size:22
Alignment explanation
Indices: 8231318--8231367 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
8231308 TTTGTATATA
8231318 TTATTAATTT-TTGCA-TTAAAT
1 TTATTAATTTATTG-ATTTAAAT
8231339 TTATTAATTTATTGATTTAAAT
1 TTATTAATTTATTGATTTAAAT
8231361 TT-TTAAT
1 TTATTAAT
8231368 AAATGTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
21 16 0.59
22 11 0.41
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (22 bp):
TTATTAATTTATTGATTTAAAT
Found at i:8232523 original size:18 final size:18
Alignment explanation
Indices: 8232485--8232523 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
8232475 AACCCCAATC
* *
8232485 AACCCCTCGCCCATCAGA
1 AACCCCTCGCCCAACAAA
*
8232503 AACCCCTCTCCCAACAAA
1 AACCCCTCGCCCAACAAA
8232521 AAC
1 AAC
8232524 AAAACGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.49, G:0.05, T:0.10
Consensus pattern (18 bp):
AACCCCTCGCCCAACAAA
Found at i:8233686 original size:34 final size:32
Alignment explanation
Indices: 8233682--8233757 Score: 54
Period size: 30 Copynumber: 2.5 Consensus size: 32
8233672 AATCCAAAAT
* * *
8233682 CCCCTAAAATTCGAAACCCCTAAAA-TCCAAA
1 CCCCTAAAATCCAAAACCCCTAAAATTCGAAA
* * *
8233713 CCCC-ATAATCCAAAATCCCTAAAA-TCCAAA
1 CCCCTAAAATCCAAAACCCCTAAAATTCGAAA
*
8233743 -CCCTTAAAT-CAAAAC
1 CCCCTAAAATCCAAAAC
8233758 TCCAAACCTC
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
29 8 0.22
30 25 0.68
31 4 0.11
ACGTcount: A:0.46, C:0.36, G:0.01, T:0.17
Consensus pattern (32 bp):
CCCCTAAAATCCAAAACCCCTAAAATTCGAAA
Found at i:8233715 original size:15 final size:15
Alignment explanation
Indices: 8233645--8233750 Score: 97
Period size: 16 Copynumber: 6.7 Consensus size: 15
8233635 TAGGTTTCTA
* *
8233645 AAACCCCTTAAATTCG
1 AAACCCC-TAAAATCC
8233661 AAACCCCTAAAAATCC
1 AAACCCCT-AAAATCC
*
8233677 AAAATCCCCTAAAATTCG
1 -AAA-CCCCTAAAA-TCC
8233695 AAACCCCTAAAATCC
1 AAACCCCTAAAATCC
*
8233710 AAACCCC-ATAATCC
1 AAACCCCTAAAATCC
*
8233724 AAAATCCCTAAAATCC
1 -AAACCCCTAAAATCC
*
8233740 AAACCCTTAAA
1 AAACCCCTAAA
8233751 TCAAAACTCC
Statistics
Matches: 75, Mismatches: 9, Indels: 13
0.77 0.09 0.13
Matches are distributed among these distances:
14 6 0.08
15 25 0.33
16 27 0.36
17 10 0.13
18 7 0.09
ACGTcount: A:0.46, C:0.34, G:0.02, T:0.18
Consensus pattern (15 bp):
AAACCCCTAAAATCC
Found at i:8233751 original size:14 final size:14
Alignment explanation
Indices: 8233683--8233830 Score: 73
Period size: 16 Copynumber: 9.5 Consensus size: 14
8233673 ATCCAAAATC
*
8233683 CCCTAAAATTCGAAA
1 CCCTAAAA-TCCAAA
8233698 CCCCTAAAATCCAAA
1 -CCCTAAAATCCAAA
* *
8233713 CCCCATAATCCAAAA
1 CCCTAAAATCC-AAA
8233728 TCCCTAAAATCCAAA
1 -CCCTAAAATCCAAA
8233743 CCCTTAAATCAAAACTCCAAA
1 CCC-----T-AAAA-TCCAAA
*
8233764 -CCTCAAAACCCAAA
1 CCCT-AAAATCCAAA
8233778 CCCTAAAATCTTCAAA
1 CCCTAAAATC--CAAA
**
8233794 CTATAAAATCTTCAAA
1 CCCTAAAATC--CAAA
* *
8233810 CTCTAAAATCAAAA
1 CCCTAAAATCCAAA
8233824 CCCTAAA
1 CCCTAAA
8233831 CCTTTCATAT
Statistics
Matches: 108, Mismatches: 12, Indels: 26
0.74 0.08 0.18
Matches are distributed among these distances:
14 31 0.29
15 20 0.19
16 44 0.41
19 1 0.01
20 6 0.06
21 6 0.06
ACGTcount: A:0.48, C:0.32, G:0.01, T:0.19
Consensus pattern (14 bp):
CCCTAAAATCCAAA
Found at i:8234223 original size:14 final size:14
Alignment explanation
Indices: 8234196--8234242 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
8234186 ATCTCATCTT
* *
8234196 GCATAACATTCATTG
1 GCAT-ACATACATTA
8234211 GCATACATACATTA
1 GCATACATACATTA
*
8234225 ACATACATACATTA
1 GCATACATACATTA
8234239 GCAT
1 GCAT
8234243 GTTATTATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 24 0.86
15 4 0.14
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (14 bp):
GCATACATACATTA
Found at i:8235227 original size:15 final size:16
Alignment explanation
Indices: 8235197--8235231 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
8235187 ATGTAATTCG
*
8235197 TAAATGAAAATCTTTT
1 TAAATGAAAATATTTT
8235213 TAAAT-AAAATATTTT
1 TAAATGAAAATATTTT
8235228 TAAA
1 TAAA
8235232 ATATAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (16 bp):
TAAATGAAAATATTTT
Found at i:8235300 original size:6 final size:6
Alignment explanation
Indices: 8235289--8235313 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8235279 TAAATATATT
8235289 TTAAAA TTAAAA TTAAAA TTAAAA T
1 TTAAAA TTAAAA TTAAAA TTAAAA T
8235314 AATTATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TTAAAA
Found at i:8235583 original size:19 final size:21
Alignment explanation
Indices: 8235559--8235601 Score: 65
Period size: 18 Copynumber: 2.2 Consensus size: 21
8235549 TATTATTTTG
8235559 TTTTTTTT-TCCT-TTT-CTT
1 TTTTTTTTCTCCTATTTCCTT
8235577 TTTTTTTTCTCCTATTTCCTT
1 TTTTTTTTCTCCTATTTCCTT
8235598 TTTT
1 TTTT
8235602 ATTCCATCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.36
19 4 0.18
20 3 0.14
21 7 0.32
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTTTTTCTCCTATTTCCTT
Found at i:8238357 original size:16 final size:16
Alignment explanation
Indices: 8238332--8238364 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8238322 TTTTAACAGA
*
8238332 TAATATATAAAATAAT
1 TAATACATAAAATAAT
8238348 TAATACATAAAATAAT
1 TAATACATAAAATAAT
8238364 T
1 T
8238365 TAATGGCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (16 bp):
TAATACATAAAATAAT
Found at i:8242709 original size:34 final size:34
Alignment explanation
Indices: 8242671--8242736 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
8242661 TATTAGTGGT
**
8242671 GTTTGTATGCGGAAAACACCGCTATATTAACGAC
1 GTTTGTATGCAAAAAACACCGCTATATTAACGAC
* **
8242705 GTTTGTATGTAAAAAATGCCGCTATATTAACG
1 GTTTGTATGCAAAAAACACCGCTATATTAACG
8242737 GTGTTTGAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (34 bp):
GTTTGTATGCAAAAAACACCGCTATATTAACGAC
Found at i:8242743 original size:34 final size:34
Alignment explanation
Indices: 8242689--8242818 Score: 151
Period size: 34 Copynumber: 3.9 Consensus size: 34
8242679 GCGGAAAACA
** * * *
8242689 CCGCTATATTAACGACGTTTGTATGTAAAAAATG
1 CCGCTATATTAACGGTGTTTGAATCTAGAAAATG
8242723 CCGCTATATTAACGGTGTTTGAATCTAGAAAATG
1 CCGCTATATTAACGGTGTTTGAATCTAGAAAATG
8242757 CCGC----TTAACGGTGTTTGAATCTAGAAAATG
1 CCGCTATATTAACGGTGTTTGAATCTAGAAAATG
* ** *
8242787 CCGCTATATTAGCGGCATTTGTATCTAGAAAA
1 CCGCTATATTAACGGTGTTTGAATCTAGAAAA
8242819 CACTACTATT
Statistics
Matches: 83, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
30 30 0.36
34 53 0.64
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (34 bp):
CCGCTATATTAACGGTGTTTGAATCTAGAAAATG
Found at i:8242767 original size:30 final size:30
Alignment explanation
Indices: 8242731--8242791 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
8242721 TGCCGCTATA
8242731 TTAACGGTGTTTGAATCTAGAAAATGCCGC
1 TTAACGGTGTTTGAATCTAGAAAATGCCGC
8242761 TTAACGGTGTTTGAATCTAGAAAATGCCGC
1 TTAACGGTGTTTGAATCTAGAAAATGCCGC
8242791 T
1 T
8242792 ATATTAGCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (30 bp):
TTAACGGTGTTTGAATCTAGAAAATGCCGC
Found at i:8243509 original size:21 final size:21
Alignment explanation
Indices: 8243485--8243540 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
8243475 CTAAAATTTT
*
8243485 GCATGCTCTTGCTCCATTCTA
1 GCATGCTCTTGCTCAATTCTA
* * * *
8243506 GCATGTTCTTCCTCAATTTTG
1 GCATGCTCTTGCTCAATTCTA
8243527 GCATGCTCTTGCTC
1 GCATGCTCTTGCTC
8243541 TCTTTTCTAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.12, C:0.30, G:0.16, T:0.41
Consensus pattern (21 bp):
GCATGCTCTTGCTCAATTCTA
Found at i:8243546 original size:21 final size:19
Alignment explanation
Indices: 8243481--8243546 Score: 51
Period size: 21 Copynumber: 3.2 Consensus size: 19
8243471 ACTACTAAAA
8243481 TTTTGCATGCTCTTGCTCC
1 TTTTGCATGCTCTTGCTCC
* * * *
8243500 ATTCTAGCATGTTCTTCCTCAA
1 -TT-TTGCATGCTCTTGCTC-C
8243522 TTTTGGCATGCTCTTGCTCTC
1 TTTT-GCATGCTCTTGCTC-C
8243543 TTTT
1 TTTT
8243547 CTATTTCTAT
Statistics
Matches: 34, Mismatches: 9, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
20 3 0.09
21 31 0.91
ACGTcount: A:0.11, C:0.27, G:0.14, T:0.48
Consensus pattern (19 bp):
TTTTGCATGCTCTTGCTCC
Found at i:8250066 original size:17 final size:17
Alignment explanation
Indices: 8250044--8250076 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8250034 TGGATTAGAA
8250044 ATGGGTATTT-GAGAAAG
1 ATGGGT-TTTGGAGAAAG
8250061 ATGGGTTTTGGAGAAA
1 ATGGGTTTTGGAGAAA
8250077 ATTGTTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (17 bp):
ATGGGTTTTGGAGAAAG
Found at i:8250658 original size:125 final size:124
Alignment explanation
Indices: 8250430--8250678 Score: 344
Period size: 125 Copynumber: 2.0 Consensus size: 124
8250420 AGTAGAATTG
* * * *
8250430 TTTAGGATTATTAAAGACATCTTATAGTGAAAAACTCTTTCCATATAAAAGTATTAAAATTTTAA
1 TTTAGGATTATTAAAGACATCTTATAGTGAAAAACGCCTTCAATATAAAAGTACTAAAATTTTAA
8250495 GACGGTTAGTGAAGGAGTTTATTCCAGAAAAAAGCCTTTAATAATTTCATTTTAAAATTTT
66 GACGGTTAGTGAAGGAGTTTATTCCAGAAAAAAGCCTTTAATAA-TTCATTTT-AAATTTT
* ** *
8250556 TTTA-GATTATTAAAGGCATCTT-TCAGTGAAAAACGCCTTCAATATACTAGTACTCAAATTTTA
1 TTTAGGATTATTAAAGACATCTTAT-AGTGAAAAACGCCTTCAATATAAAAGTACTAAAATTTTA
*
8250619 ATACGGTTAGTGAAGGCA-TTTATTCCAGAAAAATA-CCTTTAATAATTCATTTTAAATTTT
65 AGACGGTTAGTGAAGG-AGTTTATTCCAGAAAAA-AGCCTTTAATAATTCATTTTAAATTTT
8250679 GTACATAATT
Statistics
Matches: 111, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
123 7 0.06
124 9 0.08
125 89 0.80
126 6 0.05
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (124 bp):
TTTAGGATTATTAAAGACATCTTATAGTGAAAAACGCCTTCAATATAAAAGTACTAAAATTTTAA
GACGGTTAGTGAAGGAGTTTATTCCAGAAAAAAGCCTTTAATAATTCATTTTAAATTTT
Found at i:8250719 original size:125 final size:125
Alignment explanation
Indices: 8250435--8250724 Score: 324
Period size: 125 Copynumber: 2.3 Consensus size: 125
8250425 AATTGTTTAG
* * * * * ** * *
8250435 GATTATTAAAGACATCTTAT-AGTGAAAAACTCTTTCCATATAAAAGTATTAAAATTTTAAGACG
1 GATTATTAAAGGCATCTT-TCAGAGAAAAACGCCTTCAATATACTAGTACTCAAATTTTAAGACG
*
8250499 GTTAGTGAAGGAGTTTATTCCAGAAAAAAGCCTTTAATAATTTCATTTTAAAATTTTTTTA
65 GTTAGTGAAGGAGTTTATTCCAGAAAAAAGCCTTTAATAATTTCATTTTAAAATTTTTATA
* *
8250560 GATTATTAAAGGCATCTTTCAGTGAAAAACGCCTTCAATATACTAGTACTCAAATTTTAATACGG
1 GATTATTAAAGGCATCTTTCAGAGAAAAACGCCTTCAATATACTAGTACTCAAATTTTAAGACGG
8250625 TTAGTGAAGGCA-TTTATTCCAGAAAAATA-CCTTTAATAA-TTCATTTT-AAATTTTGTACATA
66 TTAGTGAAGG-AGTTTATTCCAGAAAAA-AGCCTTTAATAATTTCATTTTAAAATTTT-T--ATA
* ** *
8250686 -ATTATTGAAGGCAT-TTTTTGAGAACAAATGCCTTCAATA
1 GATTATTAAAGGCATCTTTCAGAGAA-AAACGCCTTCAATA
8250725 ATTTCGTTTT
Statistics
Matches: 143, Mismatches: 15, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
123 7 0.05
124 17 0.12
125 115 0.80
126 4 0.03
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.37
Consensus pattern (125 bp):
GATTATTAAAGGCATCTTTCAGAGAAAAACGCCTTCAATATACTAGTACTCAAATTTTAAGACGG
TTAGTGAAGGAGTTTATTCCAGAAAAAAGCCTTTAATAATTTCATTTTAAAATTTTTATA
Found at i:8250849 original size:187 final size:185
Alignment explanation
Indices: 8250520--8250860 Score: 443
Period size: 187 Copynumber: 1.8 Consensus size: 185
8250510 AGTTTATTCC
* * ** * *
8250520 AGAAAAAAGCCTTTAATAATTTCATTTTAAAATTTTTTTAGATTATTAAAGGCATCTTTCAGTGA
1 AGAAAAAAGCCTTCAATAATTTCATTTTAAAAATAGTTGAGATTATTAAAGGCATCTTTCAGTAA
* * *
8250585 AAAACGCCTTCAATATACTAGTACTCAAATTTTAATACGGTTAGTGAAGGCATTTATTCCAGAAA
66 AAAACGCCTTCAATATACTACTACTCAAATTTTAAGACGGTTAGTAAAGGCATTTATTCCAGAAA
*
8250650 AATACCTTTAATAATTCATTTTAAATTTTGTACATAATTATTGAAGGCATTTTTTG
131 AACACCTTTAATAATT-ATTTTAAATTTTGTACATAATTATTGAAGGCATTTTTTG
* * * *
8250706 AGAACAAATGCCTTCAATAATTTCGTTTTAAAAATAGTTGGGATTATTAAAGGCGTC-TTCTAGT
1 AGAA-AAAAGCCTTCAATAATTTCATTTTAAAAATAGTTGAGATTATTAAAGGCATCTTTC-AGT
* * * *
8250770 AAAAAATGCCTTCAATAT-TTCACTACTCAAATTTTAAGATGGTTAGTAAAGGCGTTTATTCCAG
64 AAAAAACGCCTTCAATATACT-ACTACTCAAATTTTAAGACGGTTAGTAAAGGCATTTATTCCAG
* * *
8250834 AGAAACGCCTTTAATAATTTTTTTAAA
128 AAAAACACCTTTAATAATTATTTTAAA
8250861 AAAAATTTTG
Statistics
Matches: 131, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
186 15 0.11
187 116 0.89
ACGTcount: A:0.37, C:0.13, G:0.13, T:0.38
Consensus pattern (185 bp):
AGAAAAAAGCCTTCAATAATTTCATTTTAAAAATAGTTGAGATTATTAAAGGCATCTTTCAGTAA
AAAACGCCTTCAATATACTACTACTCAAATTTTAAGACGGTTAGTAAAGGCATTTATTCCAGAAA
AACACCTTTAATAATTATTTTAAATTTTGTACATAATTATTGAAGGCATTTTTTG
Found at i:8250864 original size:125 final size:125
Alignment explanation
Indices: 8250735--8250980 Score: 305
Period size: 125 Copynumber: 2.0 Consensus size: 125
8250725 ATTTCGTTTT
* * ***
8250735 AAAAATAGTTGGGATTATTAAAGGCGTCTTCTAGTAAAAAATGCCTTCAATATTTCACTACTCAA
1 AAAAAT-GTTGGGATTATTAAAGGCGTCTTCCAGTAAAAAACGCCTTCAATAAACCACTACTCAA
* * * *
8250800 ATTTTAAGATGGTT-AGTAAAGGCGTTTATTCCAGAGAAACGCCTTTAATAATTTTTTTAAA
65 ATTTTAAAACGGTTCA-TAAAAGCGTTTATTCCAGAAAAACGCCTTTAATAATTTTTTTAAA
* * * * *
8250861 AAAAATTTTGGGATTATTAAAGGTGTCTTCCAGTGAAAAACGCCTTTAATAAACCACTATTCAAA
1 AAAAATGTTGGGATTATTAAAGGCGTCTTCCAGTAAAAAACGCCTTCAATAAACCACTACTCAAA
* * * *
8250926 TTTTAAAACGGTTCATAAAAGCGTTTATTCTAGAAAAATGCCTTTACTGATTTTT
66 TTTTAAAACGGTTCATAAAAGCGTTTATTCCAGAAAAACGCCTTTAATAATTTTT
8250981 ATTTAATTTA
Statistics
Matches: 101, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
125 94 0.93
126 7 0.07
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (125 bp):
AAAAATGTTGGGATTATTAAAGGCGTCTTCCAGTAAAAAACGCCTTCAATAAACCACTACTCAAA
TTTTAAAACGGTTCATAAAAGCGTTTATTCCAGAAAAACGCCTTTAATAATTTTTTTAAA
Found at i:8251030 original size:188 final size:186
Alignment explanation
Indices: 8250836--8251428 Score: 622
Period size: 188 Copynumber: 3.1 Consensus size: 186
8250826 TATTCCAGAG
* ** **
8250836 AAACGCCTTTAATAATTT-TTTTAAAAAAAATTTTGGGATTATTAAAGGTGTCTTCCAGTGAAAA
1 AAACGCCTTCAATAATTTCTTTT-AAAAAAATTTTGGGATTATTAAAGGCATCTTATAGTGAAAA
* * * *
8250900 ACGCCTTTAATAAACCACTATTCAAATTTTAAAACGGTTCA-TAAAAGCGTTTATTCTAGAAAAA
65 ACGCCTTCAATATACCACTATTCAAATTTTAAGACGGTT-AGTGAAAGCGTTTATTCTAGAAAAA
* * * * * *
8250964 TGCCTTTACTGATTTTTATTTAATTTATGTACATAATTATTGAATGCGTGTTTTGAGAAC
129 TGCCTTCACTAATTTTTATATAATTT-TGTACATAATTATTGAAGGCAT-TTTTCAGAAC
* *
8251024 AAACGCCTTCAATAATTTCATTTAAAAAAATTTTGAGATTATTAAAGGCATCTTATAGTGAAAAA
1 AAACGCCTTCAATAATTTCTTTTAAAAAAATTTTGGGATTATTAAAGGCATCTTATAGTGAAAAA
* * * * * *
8251089 CACCTTCAATATACCAGTACTCAAATTTTAAGACGATTAGTGAAAGTGTTTATTCTAGAAAAATA
66 CGCCTTCAATATACCACTATTCAAATTTTAAGACGGTTAGTGAAAGCGTTTATTCTAGAAAAATG
* * * * * * *
8251154 CCTTCAATAATTCATGA-AAAATTTTGTACATAAATATTAAAGGCATTTCTTCAAAAC
131 CCTTCACTAATT-TTTATATAATTTTGTACATAATTATTGAAGGCATTT-TTCAGAAC
* * * * *
8251211 AAAACGTCTTTAATAATTTCATTTTAAAAATA-GTTGGGATTATTAAAGGCATCTTTTAGTGAAA
1 -AAACGCCTTCAATAATTTC-TTTTAAAAAAATTTTGGGATTATTAAAGGCATCTTATAGTGAAA
* * * * * * *
8251275 AACGCCTTCAATATTCTATTGCTT-AAATTTTAAGACGGTTAGTGAAGGCATTTATTCTCTACAA
64 AACGCCTTCAATATACCACT-ATTCAAATTTTAAGACGGTTAGTGAAAGCGTTTA-T-TCTAGAA
*
8251339 AAATGCCTTCACTAATTTTT-TATAATTTTTTTACATAATTATTGAAGGCATTTTTTCAGAAC
126 AAATGCCTTCACTAATTTTTATATAA-TTTTGTACATAATTATTGAAGGCA-TTTTTCAGAAC
*
8251401 AAATGCCTTCAATAATTTTCTTTTAAAA
1 AAACGCCTTCAATAA-TTTCTTTTAAAA
8251429 GTAGTTAAGA
Statistics
Matches: 332, Mismatches: 60, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
186 2 0.01
187 25 0.08
188 209 0.63
189 40 0.12
190 53 0.16
191 3 0.01
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (186 bp):
AAACGCCTTCAATAATTTCTTTTAAAAAAATTTTGGGATTATTAAAGGCATCTTATAGTGAAAAA
CGCCTTCAATATACCACTATTCAAATTTTAAGACGGTTAGTGAAAGCGTTTATTCTAGAAAAATG
CCTTCACTAATTTTTATATAATTTTGTACATAATTATTGAAGGCATTTTTCAGAAC
Found at i:8251050 original size:312 final size:312
Alignment explanation
Indices: 8250435--8251165 Score: 828
Period size: 312 Copynumber: 2.3 Consensus size: 312
8250425 AATTGTTTAG
* * * * * ** * * *
8250435 GATTATTAAAGACATCTTATAGTGAAAAACTCTTTCCATATAAAAGTATTAAAATTTTAAGACGG
1 GATTATTAAAGGCATCTTATAGTAAAAAACACCTTCAATATACCACTACTCAAATTTTAAGACGG
* ** *
8250500 TTAGTGAAGGAGTTTATTCCAGAAAAAAGCCTTTAATAATTTCATTTTAAAATTTTTTTAGATTA
66 TTAGTAAAGGAGTTTATTCCAGAAAAAAGCCTTTAATAATTT-ATTTTAAAAAATTTTGAGATTA
* * * * *
8250565 TTAAAGGCATCTTTCAGTGAAAAACGCCTTCAATATACTAGTACTCAAATTTTAATACGGTTAGT
130 TTAAAGGCATCTTCCAGTGAAAAACGCCTTCAATAAACCACTACTCAAATTTTAAAACGGTTAGT
* *
8250630 GAAGGCATTTATTCCAGAAAAATACCTTTAATAATTCATTTTAAATTTTGTACATAATTATTGAA
195 AAAAGCATTTATTCCAGAAAAATACCTTTAATAATTCATTTTAAATTTTGTACATAATTATTGAA
* * * * *
8250695 GGCATTTTTTGAGAACAAATGCCTTCAATAATTTCGTTTTAAAAATA-GTTGG
260 GGCATGTTTTGAGAACAAACGCCTTCAATAATTTCGATTTAAAAAAATGTTGA
* * ** ** *
8250747 GATTATTAAAGGCGTCTTCTAGTAAAAAATGCCTTCAATATTTCACTACTCAAATTTTAAGATGG
1 GATTATTAAAGGCATCTTATAGTAAAAAACACCTTCAATATACCACTACTCAAATTTTAAGACGG
* * * *
8250812 TTAGTAAAGGCGTTTATTCCAGAGAAACGCCTTTAATAATTT-TTTTAAAAAAAATTTTGGGATT
66 TTAGTAAAGGAGTTTATTCCAGAAAAAAGCCTTTAATAATTTATTTT--AAAAAATTTTGAGATT
** * *
8250876 ATTAAAGGTGTCTTCCAGTGAAAAACGCCTTTAATAAACCACTATTCAAATTTTAAAACGGTTCA
129 ATTAAAGGCATCTTCCAGTGAAAAACGCCTTCAATAAACCACTACTCAAATTTTAAAACGGTT-A
* * * * * * *
8250941 -TAAAAGCGTTTATTCTAGAAAAATGCCTTTACTGATT-TTTATTTAATTTATGTACATAATTAT
193 GTAAAAGCATTTATTCCAGAAAAATACCTTTAATAATTCATT-TTAAATTT-TGTACATAATTAT
* * *
8251004 TGAATGCGTGTTTTGAGAACAAACGCCTTCAATAATTTC-ATTTAAAAAAATTTTGA
256 TGAAGGCATGTTTTGAGAACAAACGCCTTCAATAATTTCGATTTAAAAAAATGTTGA
* * *
8251060 GATTATTAAAGGCATCTTATAGTGAAAAACACCTTCAATATACCAGTACTCAAATTTTAAGACGA
1 GATTATTAAAGGCATCTTATAGTAAAAAACACCTTCAATATACCACTACTCAAATTTTAAGACGG
* * *
8251125 TTAGTGAAA-GTGTTTATTCTAGAAAAATA-CCTTCAATAATT
66 TTAGT-AAAGGAGTTTATTCCAGAAAAA-AGCCTTTAATAATT
8251166 CATGAAAAAT
Statistics
Matches: 347, Mismatches: 64, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
310 4 0.01
311 2 0.01
312 200 0.58
313 138 0.40
314 3 0.01
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.37
Consensus pattern (312 bp):
GATTATTAAAGGCATCTTATAGTAAAAAACACCTTCAATATACCACTACTCAAATTTTAAGACGG
TTAGTAAAGGAGTTTATTCCAGAAAAAAGCCTTTAATAATTTATTTTAAAAAATTTTGAGATTAT
TAAAGGCATCTTCCAGTGAAAAACGCCTTCAATAAACCACTACTCAAATTTTAAAACGGTTAGTA
AAAGCATTTATTCCAGAAAAATACCTTTAATAATTCATTTTAAATTTTGTACATAATTATTGAAG
GCATGTTTTGAGAACAAACGCCTTCAATAATTTCGATTTAAAAAAATGTTGA
Found at i:8257476 original size:19 final size:17
Alignment explanation
Indices: 8257444--8257492 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 17
8257434 TGTCAAGTCA
*
8257444 TTTTTTCATTTTTATTTT
1 TTTTTTC-TTTTTATTTC
8257462 TTTATTTACTTTTTATTTC
1 TTT-TTT-CTTTTTATTTC
8257481 TTTTTTCTTTTT
1 TTTTTTCTTTTT
8257493 TTACTATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 6 0.21
18 6 0.21
19 15 0.54
20 1 0.04
ACGTcount: A:0.10, C:0.08, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTTTCTTTTTATTTC
Found at i:8257699 original size:32 final size:31
Alignment explanation
Indices: 8257663--8257725 Score: 72
Period size: 32 Copynumber: 2.0 Consensus size: 31
8257653 TTTTTTAAAA
*
8257663 TTAATGATATAAATATATATTTTATTATTAAT
1 TTAATGATATAAATATATATATTA-TATTAAT
** **
8257695 TTAATTTTATATTTATATATATTATATTAAT
1 TTAATGATATAAATATATATATTATATTAAT
8257726 AAGATTATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
31 7 0.27
32 19 0.73
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (31 bp):
TTAATGATATAAATATATATATTATATTAAT
Found at i:8258131 original size:14 final size:14
Alignment explanation
Indices: 8258112--8258139 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8258102 ATCGGATACG
8258112 AGTTTAGAATTTAA
1 AGTTTAGAATTTAA
8258126 AGTTTAGAATTTAA
1 AGTTTAGAATTTAA
8258140 TAAAAACACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (14 bp):
AGTTTAGAATTTAA
Found at i:8258729 original size:27 final size:27
Alignment explanation
Indices: 8258693--8258748 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
8258683 CTGCAATGGC
*
8258693 TAATAAAATACTCTCATTCAAATTGAA
1 TAATAAAATACTCTCACTCAAATTGAA
8258720 TAATAAAATACTCTCACTCAAATTGAA
1 TAATAAAATACTCTCACTCAAATTGAA
8258747 TA
1 TA
8258749 CTTTTTGTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.48, C:0.16, G:0.04, T:0.32
Consensus pattern (27 bp):
TAATAAAATACTCTCACTCAAATTGAA
Found at i:8261096 original size:12 final size:12
Alignment explanation
Indices: 8261079--8261103 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8261069 TTGTCCATTT
8261079 TCCATTCATGCA
1 TCCATTCATGCA
8261091 TCCATTCATGCA
1 TCCATTCATGCA
8261103 T
1 T
8261104 TTATTTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (12 bp):
TCCATTCATGCA
Found at i:8267800 original size:9 final size:10
Alignment explanation
Indices: 8267784--8267809 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8267774 TTTTTCTTTC
8267784 ATTTTTTTGT
1 ATTTTTTTGT
8267794 ATTTTTTTGT
1 ATTTTTTTGT
8267804 ATTTTT
1 ATTTTT
8267810 ATTATTATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.08, T:0.81
Consensus pattern (10 bp):
ATTTTTTTGT
Found at i:8267961 original size:68 final size:71
Alignment explanation
Indices: 8267811--8267962 Score: 169
Period size: 68 Copynumber: 2.2 Consensus size: 71
8267801 TGTATTTTTA
* *
8267811 TTAT-TATTATT-TTATATATGTATATATTTTTTTTCTTTTCTTTTATTATTATTTTTTTATCTT
1 TTATGTATTATTATTATATATGTATATATTTTATTTCTTTTCTTTTATTATTATTTTTTCATCTT
*
8267874 AGGTAT
66 AGATAT
* * *
8267880 TTATGTA-T-TTATTA-ATATGTATATATCTTTATTT-TTTTC-TTTATTCTT-TTTTTTCCTGT
1 TTATGTATTATTATTATATATGTATATAT-TTTATTTCTTTTCTTTTATTATTATTTTTTCATCT
8267939 TA-ATAT
65 TAGATAT
8267945 TTATGTATTATCTATTAT
1 TTATGTATTAT-TATTAT
8267963 TTAATTTTAA
Statistics
Matches: 70, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
65 10 0.14
66 11 0.16
67 9 0.13
68 24 0.34
69 14 0.20
70 2 0.03
ACGTcount: A:0.22, C:0.06, G:0.05, T:0.67
Consensus pattern (71 bp):
TTATGTATTATTATTATATATGTATATATTTTATTTCTTTTCTTTTATTATTATTTTTTCATCTT
AGATAT
Found at i:8268026 original size:15 final size:15
Alignment explanation
Indices: 8267987--8268032 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
8267977 TCTGTTAATT
8267987 TTTTTTATTTATTT-
1 TTTTTTATTTATTTA
* *
8268001 TCGTTTCATTTATTTA
1 T-TTTTTATTTATTTA
8268017 TTTTTTATTTATTTA
1 TTTTTTATTTATTTA
8268032 T
1 T
8268033 CTGGTTGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 1 0.04
15 24 0.92
16 1 0.04
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.76
Consensus pattern (15 bp):
TTTTTTATTTATTTA
Found at i:8268923 original size:17 final size:16
Alignment explanation
Indices: 8268903--8268965 Score: 65
Period size: 17 Copynumber: 3.8 Consensus size: 16
8268893 ATTTAATGTT
8268903 CTTTTATCTTTATTTTA
1 CTTTTAT-TTTATTTTA
*
8268920 CTTTTATTTTTGTTTTA
1 CTTTTA-TTTTATTTTA
*
8268937 CTCTT-TTTTATTTTCA
1 CTTTTATTTTATTTT-A
*
8268953 TTTTTATTTTATT
1 CTTTTATTTTATT
8268966 ATTTTATTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
15 8 0.21
16 4 0.11
17 25 0.66
18 1 0.03
ACGTcount: A:0.14, C:0.10, G:0.02, T:0.75
Consensus pattern (16 bp):
CTTTTATTTTATTTTA
Found at i:8268929 original size:5 final size:5
Alignment explanation
Indices: 8268904--8268975 Score: 51
Period size: 5 Copynumber: 13.8 Consensus size: 5
8268894 TTTAATGTTC
* *
8268904 TTTTA TCTTTA TTTTA CTTTTA TTTTTG TTTTA CTCTT- TTTTA TTTTCA
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA TTTT-A
8268953 TTTTTA TTTTA --TTA TTTTA TTTT
1 -TTTTA TTTTA TTTTA TTTTA TTTT
8268976 CTTTAAATAA
Statistics
Matches: 54, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
3 3 0.06
4 3 0.06
5 25 0.46
6 19 0.35
7 4 0.07
ACGTcount: A:0.15, C:0.07, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:8268955 original size:27 final size:25
Alignment explanation
Indices: 8268912--8268976 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 25
8268902 TCTTTTATCT
*
8268912 TTATTTTACTTTT-ATTTTTGTTTTA
1 TTATTTTA-TTTTCATTTTTATTTTA
*
8268937 CTCTTTTTTATTTTCATTTTTATTTTA
1 -T-TATTTTATTTTCATTTTTATTTTA
8268964 TTATTTTATTTTC
1 TTATTTTATTTTC
8268977 TTTAAATAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 11 0.32
26 6 0.18
27 17 0.50
ACGTcount: A:0.15, C:0.08, G:0.02, T:0.75
Consensus pattern (25 bp):
TTATTTTATTTTCATTTTTATTTTA
Found at i:8268956 original size:13 final size:13
Alignment explanation
Indices: 8268940--8268976 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
8268930 TGTTTTACTC
8268940 TTTTTTATTTTCA
1 TTTTTTATTTTCA
8268953 -TTTTTATTTT-A
1 TTTTTTATTTTCA
8268964 TTATTTTATTTTC
1 TT-TTTTATTTTC
8268977 TTTAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
11 1 0.05
12 11 0.52
13 9 0.43
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTTTTATTTTCA
Found at i:8269059 original size:59 final size:60
Alignment explanation
Indices: 8268994--8269227 Score: 320
Period size: 59 Copynumber: 4.0 Consensus size: 60
8268984 AAAATCCAAA
8268994 AAAATC-AA-TTTTCAAAAAACCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
1 AAAATCAAAGTTTTCAAAAAA-CAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
* * *
8269053 AAAATCAAAGTTTCCAAAAAA-TATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATCAAAGTTTTCAAAAAACAATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTTCTTG
* * *
8269112 AAAATCAAAGTTTTC-AAAAACTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAA
1 AAAATCAAAGTTTTCAAAAAACAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT-G
*
8269172 AAAATC-AA-TTTTCAAAAAATCAATTTTTGAGGAAAAATTGAAAGTATCAATTTTTC
1 AAAATCAAAGTTTTCAAAAAA-CAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC
8269228 CTGCACAAGA
Statistics
Matches: 158, Mismatches: 9, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
58 12 0.08
59 93 0.59
60 43 0.27
61 10 0.06
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.35
Consensus pattern (60 bp):
AAAATCAAAGTTTTCAAAAAACAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
Found at i:8269063 original size:32 final size:32
Alignment explanation
Indices: 8269027--8269123 Score: 82
Period size: 30 Copynumber: 3.2 Consensus size: 32
8269017 TTTTTGAGGA
8269027 AAAGTTGAAAGTATCAATTTTTCTTGAAAATC
1 AAAGTTGAAAGTATCAATTTTTCTTGAAAATC
* * **
8269059 AAAGTTTCCAAA--A--AATATTT-TTGGGAA--
1 AAAG-TT-GAAAGTATCAATTTTTCTTGAAAATC
*
8269086 AAAGTTGAAAGTATCAATTTTCCTTGAAAATC
1 AAAGTTGAAAGTATCAATTTTTCTTGAAAATC
8269118 AAAGTT
1 AAAGTT
8269124 TTCAAAAACT
Statistics
Matches: 47, Mismatches: 9, Indels: 18
0.64 0.12 0.24
Matches are distributed among these distances:
25 3 0.06
26 2 0.04
27 5 0.11
29 10 0.21
30 11 0.23
32 11 0.23
33 2 0.04
34 3 0.06
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.35
Consensus pattern (32 bp):
AAAGTTGAAAGTATCAATTTTTCTTGAAAATC
Found at i:8269190 original size:15 final size:15
Alignment explanation
Indices: 8269170--8269198 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8269160 AATTTTTCTT
8269170 AAAAAATCAATTTTC
1 AAAAAATCAATTTTC
8269185 AAAAAATCAATTTT
1 AAAAAATCAATTTT
8269199 TGAGGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (15 bp):
AAAAAATCAATTTTC
Found at i:8275920 original size:7 final size:8
Alignment explanation
Indices: 8275901--8275944 Score: 61
Period size: 8 Copynumber: 5.2 Consensus size: 8
8275891 ACTATGCTTA
8275901 AAAAAATG
1 AAAAAATG
8275909 AAAAAATG
1 AAAAAATG
8275917 AAAAAATG
1 AAAAAATG
8275925 AAAAAAAATG
1 --AAAAAATG
*
8275935 AAAAAGTG
1 AAAAAATG
8275943 AA
1 AA
8275945 TGAAAAAGGA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
8 25 0.76
10 8 0.24
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (8 bp):
AAAAAATG
Found at i:8275950 original size:18 final size:18
Alignment explanation
Indices: 8275901--8275944 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
8275891 ACTATGCTTA
8275901 AAAAAATG--AAAAAATG
1 AAAAAATGAAAAAAAATG
8275917 AAAAAATGAAAAAAAATG
1 AAAAAATGAAAAAAAATG
*
8275935 AAAAAGTGAA
1 AAAAAATGAA
8275945 TGAAAAAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 8 0.32
18 17 0.68
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (18 bp):
AAAAAATGAAAAAAAATG
Found at i:8277101 original size:40 final size:41
Alignment explanation
Indices: 8276950--8277198 Score: 364
Period size: 41 Copynumber: 6.1 Consensus size: 41
8276940 ATGATTGTCA
8276950 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
8276991 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
8277032 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
8277073 AGGAGCAATTTAC-TTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
8277113 AGGAGCAATTTA-TTTTCAAAGT-GTTGAG-C-CTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * * * **
8277150 AGGAGCCATTTATGTTTCTCAAAGTCATTGAGCCTCTGCCTAG
1 AGGAGCAATTTA-CTTT-TCAAAGTCGTGGTGCCTCTGTTTAG
8277193 AGGAGC
1 AGGAGC
8277199 TTTGATAAAA
Statistics
Matches: 195, Mismatches: 6, Indels: 12
0.92 0.03 0.06
Matches are distributed among these distances:
37 19 0.10
38 1 0.01
39 7 0.04
40 55 0.28
41 100 0.51
42 1 0.01
43 12 0.06
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.35
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:8277462 original size:18 final size:16
Alignment explanation
Indices: 8277395--8277457 Score: 56
Period size: 16 Copynumber: 3.6 Consensus size: 16
8277385 TTTTTTTGTA
*
8277395 TTTTTATTATTATTAT
1 TTTTTTTTATTATTAT
8277411 TTTATATATGTATATATATTA-
1 TTT-T-T-T-T-TAT-TATTAT
8277432 TTTTTTTTATTATTAT
1 TTTTTTTTATTATTAT
8277448 TTTTTTTTAT
1 TTTTTTTTAT
8277458 CTTATATTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
15 5 0.13
16 16 0.41
17 2 0.05
18 2 0.05
19 1 0.03
20 2 0.05
21 6 0.15
22 5 0.13
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (16 bp):
TTTTTTTTATTATTAT
Found at i:8277464 original size:37 final size:39
Alignment explanation
Indices: 8277395--8277468 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 39
8277385 TTTTTTTGTA
*
8277395 TTTTTATTATTATTATTTTATATATGTATATATATTATTT
1 TTTTTATTATTATTATTTTATATATCTATATAT-TTATTT
*
8277435 TTTTTATTATTATT-TTTT-TTTATCT-TATATTTAT
1 TTTTTATTATTATTATTTTATATATCTATATATTTAT
8277469 GTATTTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 4 0.12
37 5 0.16
38 5 0.16
39 4 0.12
40 14 0.44
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.72
Consensus pattern (39 bp):
TTTTTATTATTATTATTTTATATATCTATATATTTATTT
Found at i:8277483 original size:63 final size:64
Alignment explanation
Indices: 8277370--8277542 Score: 167
Period size: 63 Copynumber: 2.7 Consensus size: 64
8277360 GTAAGTCTAT
* * * *
8277370 TTTTTTTTCTTTCATTTTTTTTGTATTTTTA-TTAT-TATTATTTTATATATGTATATAT-ATTA
1 TTTTTTTTATTTTATTTTTTTT-TATTTATATTTATGTATTATATTATATATGTATATATCATTA
*
8277432 TTTTTTTTATTATTATTTTTTTTTATCTTATATTTATGTATT-TATTA-ATATGTATATATCTTT
1 TTTTTTTTATT-TTATTTTTTTTTAT-TTATATTTATGTATTATATTATATATGTATATATCATT
8277495 A
64 A
* * *
8277496 TTTTTTTTCTTTTTTCTTCTTTTTTTCTGTTAATATTTATGTATTAT
1 -TTTTTTT-TATTTTATT-TTTTTTTAT-TT-ATATTTATGTATTAT
8277543 CTGTTATTTA
Statistics
Matches: 92, Mismatches: 9, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
62 13 0.14
63 26 0.28
64 11 0.12
65 15 0.16
66 13 0.14
67 13 0.14
68 1 0.01
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (64 bp):
TTTTTTTTATTTTATTTTTTTTTATTTATATTTATGTATTATATTATATATGTATATATCATTA
Found at i:8277521 original size:67 final size:63
Alignment explanation
Indices: 8277416--8277540 Score: 144
Period size: 67 Copynumber: 1.9 Consensus size: 63
8277406 ATTATTTTAT
*
8277416 ATATGTATATATATTATTTTTTTTATTATTATTTTTTTT-TATCTTATATTTATGTATTTATTA
1 ATATGTATATATATTATTTTTTTTATTATTATTTTTTTTCTAT-TAATATTTATGTATTTATTA
* * * * *
8277479 ATATGTATATATCTTTATTTTTTTTCTTTTTTCTTCTTTTTTTCTGTTAATATTTATGTATT
1 ATATGTATATAT-ATTATTTTTTTT-ATTATT-AT-TTTTTTTCTATTAATATTTATGTATT
8277541 ATCTGTTATT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
63 12 0.24
64 11 0.22
65 4 0.08
66 1 0.02
67 21 0.41
68 2 0.04
ACGTcount: A:0.22, C:0.05, G:0.04, T:0.69
Consensus pattern (63 bp):
ATATGTATATATATTATTTTTTTTATTATTATTTTTTTTCTATTAATATTTATGTATTTATTA
Found at i:8277602 original size:19 final size:20
Alignment explanation
Indices: 8277573--8277626 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
8277563 TCTATTAATT
8277573 TTTTTGATTTATCTTATTTA
1 TTTTTGATTTATCTTATTTA
* *
8277593 TTTTTG-TTTATTTTTTTTA
1 TTTTTGATTTATCTTATTTA
*
8277612 TTTTTTTATTTATCT
1 -TTTTTGATTTATCT
8277627 GGTTGGAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
19 11 0.39
20 11 0.39
21 6 0.21
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.78
Consensus pattern (20 bp):
TTTTTGATTTATCTTATTTA
Found at i:8277604 original size:10 final size:9
Alignment explanation
Indices: 8277589--8277622 Score: 52
Period size: 10 Copynumber: 3.8 Consensus size: 9
8277579 ATTTATCTTA
8277589 TTTATTTTT
1 TTTATTTTT
8277598 GTTTATTTTT
1 -TTTATTTTT
8277608 TTTA-TTTT
1 TTTATTTTT
8277616 TTTATTT
1 TTTATTT
8277623 ATCTGGTTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.35
9 6 0.26
10 9 0.39
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (9 bp):
TTTATTTTT
Found at i:8278048 original size:11 final size:11
Alignment explanation
Indices: 8278032--8278063 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
8278022 TTGATCAACT
8278032 TTCCGACGAAC
1 TTCCGACGAAC
*
8278043 TTCCGATGAAC
1 TTCCGACGAAC
8278054 TTCCGACGAA
1 TTCCGACGAA
8278064 AAACTCAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (11 bp):
TTCCGACGAAC
Found at i:8278470 original size:17 final size:17
Alignment explanation
Indices: 8278448--8278486 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
8278438 ATTTAATGTT
8278448 CTTTTAATCTTATTTTA
1 CTTTTAATCTTATTTTA
* * *
8278465 CTTTTATTTTTGTTTTA
1 CTTTTAATCTTATTTTA
8278482 CTTTT
1 CTTTT
8278487 TTTTTATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.15, C:0.10, G:0.03, T:0.72
Consensus pattern (17 bp):
CTTTTAATCTTATTTTA
Found at i:8278475 original size:6 final size:6
Alignment explanation
Indices: 8278460--8278508 Score: 50
Period size: 6 Copynumber: 8.7 Consensus size: 6
8278450 TTTAATCTTA
* * *
8278460 TTTTAC TTTTAT TTTT-G TTTTAC TTTT-T TTTTAT TTTTA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
8278505 TTTT
1 TTTT
8278509 TATTATTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
5 13 0.36
6 23 0.64
ACGTcount: A:0.12, C:0.04, G:0.02, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:8278480 original size:11 final size:10
Alignment explanation
Indices: 8278466--8278517 Score: 68
Period size: 11 Copynumber: 4.9 Consensus size: 10
8278456 CTTATTTTAC
8278466 TTTTATTTTT
1 TTTTATTTTT
8278476 GTTTTACTTTTT
1 -TTTTA-TTTTT
8278488 TTTTATTTTT
1 TTTTATTTTT
8278498 ATTTTATTTTT
1 -TTTTATTTTT
*
8278509 TATTATTTT
1 TTTTATTTT
8278518 ATAATTCCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
10 13 0.34
11 20 0.53
12 5 0.13
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.83
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:8278491 original size:17 final size:16
Alignment explanation
Indices: 8278460--8278509 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
8278450 TTTAATCTTA
*
8278460 TTTTACTTTTATTTTTG
1 TTTTACTTTT-TTTTTT
8278477 TTTTACTTTTTTTTTAT
1 TTTTACTTTTTTTTT-T
8278494 TTTTA-TTTTATTTTTT
1 TTTTACTTTT-TTTTTT
8278510 ATTATTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
16 10 0.33
17 20 0.67
ACGTcount: A:0.12, C:0.04, G:0.02, T:0.82
Consensus pattern (16 bp):
TTTTACTTTTTTTTTT
Found at i:8278496 original size:21 final size:21
Alignment explanation
Indices: 8278457--8278517 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 21
8278447 TCTTTTAATC
* *
8278457 TTATTTTACTTTTATTTTTGTT
1 TTATTTT-TTTTTATTTTTATT
8278479 TTACTTTTTTTTTATTTTTATT
1 TTA-TTTTTTTTTATTTTTATT
*
8278501 TTATTTTTTATTATTTT
1 TTATTTTTTTTTATTTT
8278518 ATAATTCCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
21 13 0.37
22 18 0.51
23 4 0.11
ACGTcount: A:0.15, C:0.03, G:0.02, T:0.80
Consensus pattern (21 bp):
TTATTTTTTTTTATTTTTATT
Found at i:8278502 original size:15 final size:15
Alignment explanation
Indices: 8278466--8278519 Score: 54
Period size: 17 Copynumber: 3.4 Consensus size: 15
8278456 CTTATTTTAC
*
8278466 TTTTATTTTTGTTTTA
1 TTTTATTTTT-TATTA
* *
8278482 CTTTTTTTTTATTTTTA
1 -TTTTATTTT-TTATTA
8278499 TTTTATTTTTTATTA
1 TTTTATTTTTTATTA
8278514 TTTTAT
1 TTTTAT
8278520 AATTCCATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 11 0.33
16 8 0.24
17 13 0.39
18 1 0.03
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (15 bp):
TTTTATTTTTTATTA
Found at i:8278791 original size:112 final size:111
Alignment explanation
Indices: 8278589--8278793 Score: 326
Period size: 112 Copynumber: 1.8 Consensus size: 111
8278579 AAATAATTTG
8278589 AAAATTTTTTGGAAAAGTTGAAGTATCAATTTTCTTAAAATAAATTTTCAAAAAAAATGTTTTTG
1 AAAATTTTTTGGAAAAGTTGAAGTATCAATTTTCTTAAAATAAATTTTCAAAAAAAA-GTTTTTG
8278654 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAATTTTCCAA
65 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAATTTTCCAA
* *
8278701 AAAATATTTTTGGGAAAGTTGAAAGTATCAATTTTCTTCAAATTAAA-TTTCAAAAAATAA-TTT
1 AAAAT-TTTTTGGAAAAGTTG-AAGTATCAATTTTCTT-AAAATAAATTTTCAAAAAA-AAGTTT
8278764 TTG-GGAAAAGTTGAAAGTATCAATTTTCCT
62 TTGAGGAAAAGTTGAAAGTATCAATTTTCCT
8278794 ACACAAGAAA
Statistics
Matches: 87, Mismatches: 2, Indels: 8
0.90 0.02 0.08
Matches are distributed among these distances:
112 32 0.37
113 20 0.23
114 26 0.30
115 9 0.10
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (111 bp):
AAAATTTTTTGGAAAAGTTGAAGTATCAATTTTCTTAAAATAAATTTTCAAAAAAAAGTTTTTGA
GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAATTTTCCAA
Found at i:8281260 original size:114 final size:114
Alignment explanation
Indices: 8280952--8281263 Score: 315
Period size: 114 Copynumber: 2.7 Consensus size: 114
8280942 TAGAGGAGCT
** *
8280952 TTCATTATCAAGATTTTTATA-TCCTCCGAGGCAGAATATTTTAAATTTTCAAAAGTCATTGAGC
1 TTCATTATCAAGATTCATA-AGTCCTCC-AGGCAAAATATTTTAAATTTTCAAAAGTCATTGAGC
* * **
8281016 CTCTACTTTGAGAAGCTTTTTAAAGTTGTTGAAACTCAACTTATAGTAATT
64 CTCTACTTAGAGAAGCTTTTTAAAGTTGTTGAAACTCAACTTAGAGTAACA
* * *
8281067 TTCATTATCAAGATTCGTAAGTCCTCCAGGTAAAATATTTTAAATTTTCAAAAGTCATCGAGCCT
1 TTCATTATCAAGATTCATAAGTCCTCCAGGCAAAATATTTTAAATTTTCAAAAGTCATTGAGCCT
* * * ** **
8281132 CTACATATAAAAGCTTTTTATAA-TTGTTGAGCCTTTACTTAGA-TAAGCA
66 CTACTTAGAGAAGCTTTTTA-AAGTTGTTGAAACTCAACTTAGAGTAA-CA
* * *** * * * * *
8281181 TTCATTATTAAGATTCATAAGTTCTTTGGGCAAAATATTTTAACTTTTTAAAAGTTATTGTGCGT
1 TTCATTATCAAGATTCATAAGTCCTCCAGGCAAAATATTTTAAATTTTCAAAAGTCATTGAGCCT
*
8281246 TTACTTAGAGAAGCTTTT
66 CTACTTAGAGAAGCTTTT
8281264 AAATTTTCAA
Statistics
Matches: 161, Mismatches: 33, Indels: 7
0.80 0.16 0.03
Matches are distributed among these distances:
113 3 0.02
114 133 0.83
115 25 0.16
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.40
Consensus pattern (114 bp):
TTCATTATCAAGATTCATAAGTCCTCCAGGCAAAATATTTTAAATTTTCAAAAGTCATTGAGCCT
CTACTTAGAGAAGCTTTTTAAAGTTGTTGAAACTCAACTTAGAGTAACA
Found at i:8281349 original size:44 final size:45
Alignment explanation
Indices: 8281250--8281364 Score: 130
Period size: 44 Copynumber: 2.6 Consensus size: 45
8281240 GTGCGTTTAC
* *
8281250 TTAGAGAAGC-TTTTAAA-TTTTCAAAAATCATTAAGCTTCTGCT
1 TTAGAGAAGCTTTTTAAATTTTTAAAAAATCATTAAGCTTCTGAT
* * *
8281293 TCAGGGAA-CTTTTTAAATTTTTAAAAAATCGTTAAGCTTCT-AT
1 TTAGAGAAGCTTTTTAAATTTTTAAAAAATCATTAAGCTTCTGAT
* * *
8281336 TTAGAGAAGCTTTTCAAATTCTAAAAAAA
1 TTAGAGAAGCTTTTTAAATTTTTAAAAAA
8281365 AAAAAAAAAA
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
42 1 0.02
43 20 0.34
44 38 0.64
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.38
Consensus pattern (45 bp):
TTAGAGAAGCTTTTTAAATTTTTAAAAAATCATTAAGCTTCTGAT
Found at i:8281657 original size:12 final size:12
Alignment explanation
Indices: 8281640--8281685 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
8281630 AGCTATCAAC
8281640 AGCCATCCTAAT
1 AGCCATCCTAAT
* *
8281652 AGCCAT-C-GAC
1 AGCCATCCTAAT
8281662 AGCCATCCTAAT
1 AGCCATCCTAAT
*
8281674 AGCCAGCCTAAT
1 AGCCATCCTAAT
8281686 TTTAGGTAGC
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
10 7 0.26
11 2 0.07
12 18 0.67
ACGTcount: A:0.33, C:0.35, G:0.13, T:0.20
Consensus pattern (12 bp):
AGCCATCCTAAT
Found at i:8282748 original size:123 final size:125
Alignment explanation
Indices: 8282612--8282850 Score: 347
Period size: 123 Copynumber: 1.9 Consensus size: 125
8282602 AAAATATGAT
** * * *
8282612 AAAATAATTATAAAATCACAAGTGGTGAATTTATTGAAAATATTTACATAAAGAAATTTTCTAAA
1 AAAATAACAATAAAATCACAAGTGGTGAATTTATTAAAAATATTCACACAAAGAAATTTTCTAAA
*
8282677 ATATTCTAAAAATGTTAGAAATATTTTA-AAAATTTTCAAGTATA-AAAAATATTATTAA
66 ATATTCTAAAAATATTAGAAATATTTTACAAAATTTTCAAGTATACAAAAATATTATTAA
* *
8282735 AAAATAACAATAAAGTCACAAGTGGTGATTTTATTAAAAATATTCACACAAAGAAATTTTCTAAA
1 AAAATAACAATAAAATCACAAGTGGTGAATTTATTAAAAATATTCACACAAAGAAATTTTCTAAA
* * * **
8282800 ATATTTTAAAAGTATTAGAGATATTTTACAATTTTTTCAAGTATACAAAAA
66 ATATTCTAAAAATATTAGAAATATTTTACAAAATTTTCAAGTATACAAAAA
8282851 AAAATGAACA
Statistics
Matches: 101, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
123 82 0.81
124 14 0.14
125 5 0.05
ACGTcount: A:0.50, C:0.07, G:0.08, T:0.36
Consensus pattern (125 bp):
AAAATAACAATAAAATCACAAGTGGTGAATTTATTAAAAATATTCACACAAAGAAATTTTCTAAA
ATATTCTAAAAATATTAGAAATATTTTACAAAATTTTCAAGTATACAAAAATATTATTAA
Found at i:8282926 original size:3 final size:3
Alignment explanation
Indices: 8282918--8282977 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
8282908 TTTTCCATAC
8282918 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8282966 ATA ATA ATA ATA
1 ATA ATA ATA ATA
8282978 TTCAATTTAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:8283004 original size:17 final size:16
Alignment explanation
Indices: 8282984--8283036 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 16
8282974 AATATTCAAT
8282984 TTAAATAAATAGAAAAA
1 TTAAATAAATA-AAAAA
8283001 TTAAATAAATACATAAAAA
1 TTAAATAAAT--A-AAAAA
8283020 TTGAAATAAATAAAAAA
1 TT-AAATAAATAAAAAA
8283037 GTTTTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 15 0.47
18 1 0.03
19 8 0.25
20 8 0.25
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.25
Consensus pattern (16 bp):
TTAAATAAATAAAAAA
Found at i:8287913 original size:13 final size:13
Alignment explanation
Indices: 8287897--8287966 Score: 50
Period size: 13 Copynumber: 5.0 Consensus size: 13
8287887 AAGGTTGTCC
8287897 AAAAAGTAAAAAA
1 AAAAAGTAAAAAA
*
8287910 AAAATGTAATACAAAA
1 AAAAAGT-A-A-AAAA
* *
8287926 TAACAAAATAACAAA
1 -AA-AAAGTAAAAAA
*
8287941 CAAAAGTAAAAAA
1 AAAAAGTAAAAAA
*
8287954 AAAATGTAAAAAA
1 AAAAAGTAAAAAA
8287967 CCAAATTAAC
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
13 26 0.60
14 2 0.05
15 4 0.09
16 5 0.12
17 3 0.07
18 3 0.07
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.13
Consensus pattern (13 bp):
AAAAAGTAAAAAA
Found at i:8288018 original size:171 final size:168
Alignment explanation
Indices: 8287736--8288073 Score: 595
Period size: 171 Copynumber: 2.0 Consensus size: 168
8287726 ACAAAAGCAA
* *
8287736 AAAAAAAAAATGTAATACAAAATAACAAAATAACATACAAATGTAAAAAAATGTAAAAAACCAAA
1 AAAAAAAAAATGTAATACAAAATAACAAAATAACAAACAAAAGTAAAAAAATGTAAAAAACCAAA
* *
8287801 TTAACACATATAATACAAAATGACAATTAAAAATAAATAAAATTAATAGCTCTAAGCACAAAACA
66 TTAACACATATAATACAAAATAACAATTAAAAAGAAATAAAATTAATAGCTCTAAGCACAAAACA
8287866 GAGATTTGAAAACATCAAGAAAAGGTTGTCCAAAAAGT
131 GAGATTTGAAAACATCAAGAAAAGGTTGTCCAAAAAGT
8287904 AAAAAAAAAATGTAATACAAAATAACAAAATAACAAACAAAAGTAAAAAAAAAATGTAAAAAACC
1 AAAAAAAAAATGTAATACAAAATAACAAAATAACAAACAAAAGT---AAAAAAATGTAAAAAACC
*
8287969 AAATTAACACATATAATACAAAATAACAATTAAAAAGAAATAAAATTAATAGCTTTAAGCACAAA
63 AAATTAACACATATAATACAAAATAACAATTAAAAAGAAATAAAATTAATAGCTCTAAGCACAAA
*
8288034 ACAGAGATTTGAAAACATCAAGAAAAGGTTGTCTAAAAAG
128 ACAGAGATTTGAAAACATCAAGAAAAGGTTGTCCAAAAAG
8288074 CTATAATAAA
Statistics
Matches: 161, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
168 42 0.26
171 119 0.74
ACGTcount: A:0.62, C:0.11, G:0.08, T:0.19
Consensus pattern (168 bp):
AAAAAAAAAATGTAATACAAAATAACAAAATAACAAACAAAAGTAAAAAAATGTAAAAAACCAAA
TTAACACATATAATACAAAATAACAATTAAAAAGAAATAAAATTAATAGCTCTAAGCACAAAACA
GAGATTTGAAAACATCAAGAAAAGGTTGTCCAAAAAGT
Found at i:8289118 original size:21 final size:20
Alignment explanation
Indices: 8289094--8289135 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
8289084 AAACTTACAA
8289094 AAAAAAGTAATAAAAAAAAAG
1 AAAAAAG-AATAAAAAAAAAG
**
8289115 AAAAAAGAATCCAAAAAAAG
1 AAAAAAGAATAAAAAAAAAG
8289135 A
1 A
8289136 TCATAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.79, C:0.05, G:0.10, T:0.07
Consensus pattern (20 bp):
AAAAAAGAATAAAAAAAAAG
Found at i:8292749 original size:53 final size:53
Alignment explanation
Indices: 8292639--8292786 Score: 201
Period size: 53 Copynumber: 2.8 Consensus size: 53
8292629 TATAATCATA
* * **
8292639 CAAACTTGCCCATTAAGAAT-CCCTCTCCTCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTGCCTATTAAGAATCCCCTTTCCTCTTAGAATTCTTCTCCTACAAGT
* * *
8292691 TAAACTTGCCTATTAAGAATCCCCTTTCCTTTTAGAATTCTTCTCTTACAAGT
1 CAAACTTGCCTATTAAGAATCCCCTTTCCTCTTAGAATTCTTCTCCTACAAGT
* *
8292744 CAAACTTACCTATTAAGAATCCTCTTT-CTCTTAGAATTCTTCT
1 CAAACTTGCCTATTAAGAATCCCCTTTCCTCTTAGAATTCTTCT
8292787 TTTTGCAAGT
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
52 33 0.39
53 51 0.61
ACGTcount: A:0.26, C:0.27, G:0.07, T:0.39
Consensus pattern (53 bp):
CAAACTTGCCTATTAAGAATCCCCTTTCCTCTTAGAATTCTTCTCCTACAAGT
Found at i:8292840 original size:11 final size:11
Alignment explanation
Indices: 8292822--8292863 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
8292812 GCAATATCTG
8292822 ACAAATCTCAA
1 ACAAATCTCAA
* *
8292833 ATAAATCTCTA
1 ACAAATCTCAA
8292844 ACAAATCTCAA
1 ACAAATCTCAA
8292855 ACAAATCTC
1 ACAAATCTC
8292864 TTATGGGATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:8292847 original size:22 final size:22
Alignment explanation
Indices: 8292822--8292864 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
8292812 GCAATATCTG
*
8292822 ACAAATCTCAAATAAATCTCTA
1 ACAAATCTCAAACAAATCTCTA
8292844 ACAAATCTCAAACAAATCTCT
1 ACAAATCTCAAACAAATCTCT
8292865 TATGGGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (22 bp):
ACAAATCTCAAACAAATCTCTA
Found at i:8293193 original size:2 final size:2
Alignment explanation
Indices: 8293186--8293213 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8293176 AAGTCAAATT
8293186 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8293214 AAAGGTAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8296184 original size:43 final size:43
Alignment explanation
Indices: 8296123--8296206 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
8296113 AAAAGATAGT
*
8296123 TTCTTGACGTGTTCGGATTTGTTTAGTTATATTTTAGTTTAGC
1 TTCTTGACGTGTTCGGATTTGTTTAATTATATTTTAGTTTAGC
*
8296166 TTCTTGACGTGTTTGGATTTGTTTAATTATATTTTAGTTTA
1 TTCTTGACGTGTTCGGATTTGTTTAATTATATTTTAGTTTA
8296207 TTGATTGGTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.18, C:0.07, G:0.19, T:0.56
Consensus pattern (43 bp):
TTCTTGACGTGTTCGGATTTGTTTAATTATATTTTAGTTTAGC
Found at i:8304398 original size:46 final size:47
Alignment explanation
Indices: 8304332--8304453 Score: 144
Period size: 46 Copynumber: 2.6 Consensus size: 47
8304322 TATTTAGATA
* *
8304332 AATATTAAAAGAATAAAAAAAA-AGAAAAACCTTTATAGTTATCTTTAA-
1 AATAATAAAA-AA-AAAAAAAAGAGAAAAACCTTTATAGTTAAC-TTAAC
* *
8304380 AAT-ATAAAAAAGAGAAAAAATAG-AAAACCTTTATAGTTAACTTAAC
1 AATAATAAAAAA-AAAAAAAAGAGAAAAACCTTTATAGTTAACTTAAC
8304426 AATAATAAAAAAAAAAAAAAGAGAAAAA
1 AATAATAAAAAAAAAAAAAAGAGAAAAA
8304454 ATAGTAACTA
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
45 4 0.06
46 38 0.59
47 19 0.30
48 3 0.05
ACGTcount: A:0.65, C:0.06, G:0.07, T:0.22
Consensus pattern (47 bp):
AATAATAAAAAAAAAAAAAAGAGAAAAACCTTTATAGTTAACTTAAC
Found at i:8305138 original size:22 final size:22
Alignment explanation
Indices: 8305089--8305138 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
8305079 TCAATAAAAC
*
8305089 TTTCAGAACTTTACTTATAGAA
1 TTTCATAACTTTACTTATAGAA
*
8305111 TTTCATAACTTTATTTATAGAA
1 TTTCATAACTTTACTTATAGAA
8305133 TTTCAT
1 TTTCAT
8305139 GTTAGTCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (22 bp):
TTTCATAACTTTACTTATAGAA
Found at i:8306835 original size:2 final size:2
Alignment explanation
Indices: 8306830--8306859 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8306820 TTTTTTTGGT
8306830 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8306860 ATAGCTTAGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8307886 original size:15 final size:14
Alignment explanation
Indices: 8307866--8307901 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
8307856 AAATTTTTTG
8307866 TTAAAAATAAATAAA
1 TTAAAAATAAA-AAA
*
8307881 TTAAAATTAAAAAA
1 TTAAAAATAAAAAA
8307895 TTAAAAA
1 TTAAAAA
8307902 ATCTCATCGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (14 bp):
TTAAAAATAAAAAA
Found at i:8307959 original size:13 final size:14
Alignment explanation
Indices: 8307933--8307971 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
8307923 ATGTAAAATT
*
8307933 TAAATATATTTAAA
1 TAAATATTTTTAAA
*
8307947 TATAT-TTTTTAAA
1 TAAATATTTTTAAA
8307960 TAAATATTTTTA
1 TAAATATTTTTA
8307972 GTAAAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TAAATATTTTTAAA
Found at i:8308080 original size:22 final size:23
Alignment explanation
Indices: 8308054--8308100 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
8308044 TTTGTATATA
8308054 TTATTAATTT-TTGCA-TTAAATT
1 TTATTAATTTATTG-ATTTAAATT
8308076 TTATTAATTTATTGATTTAAATT
1 TTATTAATTTATTGATTTAAATT
8308099 TT
1 TT
8308101 TTATTAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.62
Consensus pattern (23 bp):
TTATTAATTTATTGATTTAAATT
Found at i:8309833 original size:11 final size:10
Alignment explanation
Indices: 8309817--8309861 Score: 56
Period size: 11 Copynumber: 4.3 Consensus size: 10
8309807 TATCGAGTCA
8309817 TTTATTTCCTT
1 TTTATTT-CTT
8309828 TTTATTT-TT
1 TTTATTTCTT
8309837 TTCTATTTACTT
1 TT-TATTT-CTT
8309849 TTTATTTCTT
1 TTTATTTCTT
8309859 TTT
1 TTT
8309862 TCTTTTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
9 4 0.13
10 11 0.35
11 12 0.39
12 4 0.13
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTATTTCTT
Found at i:8309849 original size:21 final size:22
Alignment explanation
Indices: 8309819--8309860 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
8309809 TCGAGTCATT
*
8309819 TATTTCCTTTTTATTT-TTTTC
1 TATTTACTTTTTATTTCTTTTC
8309840 TATTTACTTTTTATTTCTTTT
1 TATTTACTTTTTATTTCTTTT
8309861 TTCTTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (22 bp):
TATTTACTTTTTATTTCTTTTC
Found at i:8309862 original size:32 final size:33
Alignment explanation
Indices: 8309817--8309878 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
8309807 TATCGAGTCA
8309817 TTTATTTCCTTTTTATTTTTTT-CTATTTACTT
1 TTTATTTCCTTTTTATTTTTTTACTATTTACTT
* *
8309849 TTTATTTCTTTTTTCTTTTTTTACTATTTA
1 TTTATTTCCTTTTTATTTTTTTACTATTTA
8309879 ATATTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 20 0.74
33 7 0.26
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (33 bp):
TTTATTTCCTTTTTATTTTTTTACTATTTACTT
Found at i:8309885 original size:18 final size:17
Alignment explanation
Indices: 8309864--8309906 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
8309854 TTCTTTTTTC
8309864 TTTTTTTACTA-TTTAATA
1 TTTTTTTA-TATTTTAA-A
8309882 TTTTTTTATATTTTAAA
1 TTTTTTTATATTTTAAA
8309899 TTTTTTTA
1 TTTTTTTA
8309907 AAATGGGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTTTATATTTTAAA
Found at i:8310084 original size:24 final size:24
Alignment explanation
Indices: 8310048--8310093 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
8310038 GATATAAATA
8310048 TATATTTTAATATTCAT-TTAATTT
1 TATATTTTAATATT-ATATTAATTT
8310072 TATA-TTTATATATTATATTAAT
1 TATATTTTA-ATATTATATTAAT
8310094 AAAATTATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (24 bp):
TATATTTTAATATTATATTAATTT
Found at i:8310252 original size:13 final size:13
Alignment explanation
Indices: 8310236--8310260 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8310226 CTCCAACGCA
8310236 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
8310249 TTTCTTTTTTTT
1 TTTCTTTTTTTT
8310261 TTGTTTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTCTTTTTTTTC
Found at i:8310260 original size:15 final size:15
Alignment explanation
Indices: 8310240--8310274 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8310230 AACGCATTTC
*
8310240 TTTTTTTTCTTTCTT
1 TTTTTTTTCTTTATT
*
8310255 TTTTTTTTGTTTATT
1 TTTTTTTTCTTTATT
8310270 TTTTT
1 TTTTT
8310275 CCTTTTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.03, C:0.06, G:0.03, T:0.89
Consensus pattern (15 bp):
TTTTTTTTCTTTATT
Found at i:8310803 original size:17 final size:17
Alignment explanation
Indices: 8310777--8310813 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
8310767 AGTAGGTTGA
8310777 TTTTTTCTTTTT-CTTT
1 TTTTTTCTTTTTACTTT
8310793 TTTTTTACTTTTTACTTT
1 TTTTTT-CTTTTTACTTT
8310811 TTT
1 TTT
8310814 GCTTCTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 6 0.32
18 7 0.37
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTTCTTTTTACTTT
Found at i:8312727 original size:27 final size:26
Alignment explanation
Indices: 8312697--8312757 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
8312687 TTAGTATTTA
*
8312697 TTTAATT-TATAATTATTTATTAATTAT
1 TTTAATTATATAATTATATA-TAA-TAT
*
8312724 TTT-ATTATATAATTATATATCATAT
1 TTTAATTATATAATTATATATAATAT
8312749 TTTAATTAT
1 TTTAATTAT
8312758 TATATTAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 6 0.20
26 10 0.33
27 14 0.47
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (26 bp):
TTTAATTATATAATTATATATAATAT
Found at i:8312750 original size:51 final size:51
Alignment explanation
Indices: 8312643--8312755 Score: 113
Period size: 50 Copynumber: 2.2 Consensus size: 51
8312633 TAATTACAAA
* * * *
8312643 ATATTTATTTTTTAATTTATTCAATATTTATTTGATTATAAATTTTAGTAT
1 ATATTTAATTTATAATTTATTCAATAATTATTTGATTATAAATTATAGTAT
* * * *
8312694 TTATTTAATTTATAA-TTATTTATTAATTATTTTATTATATAATTATA-TAT
1 ATATTTAATTTATAATTTATTCAATAATTATTTGATTATA-AATTATAGTAT
8312744 CATATTTTAATT
1 -ATA-TTTAATT
8312756 ATTATATTAA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
50 23 0.46
51 20 0.40
52 7 0.14
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (51 bp):
ATATTTAATTTATAATTTATTCAATAATTATTTGATTATAAATTATAGTAT
Found at i:8312876 original size:6 final size:6
Alignment explanation
Indices: 8312817--8312863 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
8312807 AATAAAACAA
* *
8312817 AAAAGA AAAAGG AAAAAG AAAAGG AAAAGG AAAAGG AAAAGG AAAAG
1 AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAAGG AAAAG
8312864 ATTTAAAGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (6 bp):
AAAAGG
Found at i:8314066 original size:22 final size:22
Alignment explanation
Indices: 8314040--8314083 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8314030 TGTATATTTA
*
8314040 TATTTATATCCTTAAAATTAAG
1 TATTTATATCCCTAAAATTAAG
* *
8314062 TATTTGTATCCCTAGAATTAAG
1 TATTTATATCCCTAAAATTAAG
8314084 GACAAAAAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.43
Consensus pattern (22 bp):
TATTTATATCCCTAAAATTAAG
Found at i:8318042 original size:22 final size:22
Alignment explanation
Indices: 8318016--8318059 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
8318006 TGTATATTTA
8318016 TATTTGTATCCCTAAAATTAAG
1 TATTTGTATCCCTAAAATTAAG
*
8318038 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAAAATTAAG
8318060 GATAAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (22 bp):
TATTTGTATCCCTAAAATTAAG
Found at i:8331897 original size:38 final size:38
Alignment explanation
Indices: 8331846--8331922 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
8331836 TGTGAGAATG
8331846 GATTGATTTCTAAAGATTATAAAAATTAGGTGTATTTA
1 GATTGATTTCTAAAGATTATAAAAATTAGGTGTATTTA
8331884 GATTGATTTCTAAAGATTATAAAAATTAGGTGTATTTA
1 GATTGATTTCTAAAGATTATAAAAATTAGGTGTATTTA
8331922 G
1 G
8331923 GTGCTTTGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.39, C:0.03, G:0.17, T:0.42
Consensus pattern (38 bp):
GATTGATTTCTAAAGATTATAAAAATTAGGTGTATTTA
Found at i:8339722 original size:14 final size:14
Alignment explanation
Indices: 8339705--8339732 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8339695 AATTCCTTTT
8339705 CTCGAATCTACATC
1 CTCGAATCTACATC
8339719 CTCGAATCTACATC
1 CTCGAATCTACATC
8339733 GAACTAATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.36, G:0.07, T:0.29
Consensus pattern (14 bp):
CTCGAATCTACATC
Found at i:8350154 original size:18 final size:18
Alignment explanation
Indices: 8350133--8350173 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8350123 TTCTATTCGC
*
8350133 TTTTTTACTA-TTTAATAT
1 TTTTTTA-TATTTTAAAAT
8350151 TTTTTTATATTTTAAAAT
1 TTTTTTATATTTTAAAAT
8350169 TTTTT
1 TTTTT
8350174 AAAGTGGGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 2 0.10
18 19 0.90
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTTATATTTTAAAAT
Found at i:8351561 original size:12 final size:12
Alignment explanation
Indices: 8351546--8351579 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8351536 TATATAAATG
*
8351546 TATATATTTTAT
1 TATATATTTAAT
8351558 TATATATTTAAT
1 TATATATTTAAT
*
8351570 TTTATATTTA
1 TATATATTTA
8351580 TATAAAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TATATATTTAAT
Found at i:8351697 original size:23 final size:23
Alignment explanation
Indices: 8351645--8351699 Score: 71
Period size: 23 Copynumber: 2.5 Consensus size: 23
8351635 TCTCTTTTCC
*
8351645 CTTTT-CTTTTCTTTTTGTTTAT
1 CTTTTCCTTTTCTTTTTATTTAT
8351667 -TTTTCCTTTTCTTCTTTATTT-T
1 CTTTTCCTTTTCTT-TTTATTTAT
8351689 CTTTTCCTTTT
1 CTTTTCCTTTT
8351700 TCTTATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 4 0.14
22 9 0.31
23 16 0.55
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.76
Consensus pattern (23 bp):
CTTTTCCTTTTCTTTTTATTTAT
Found at i:8352280 original size:12 final size:13
Alignment explanation
Indices: 8352252--8352299 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
8352242 TTCTTCTGAA
8352252 TTTTTTTC-ATTCCT
1 TTTTTTTCAATT--T
*
8352266 TTTTTTTCGATTT
1 TTTTTTTCAATTT
8352279 TTTTTTTCAATTT
1 TTTTTTTCAATTT
8352292 TTTATTTT
1 TTT-TTTT
8352300 TTTTAATTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
13 16 0.52
14 12 0.39
15 3 0.10
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.77
Consensus pattern (13 bp):
TTTTTTTCAATTT
Found at i:8352439 original size:22 final size:23
Alignment explanation
Indices: 8352414--8352462 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
8352404 ATTTTTTAAT
*
8352414 TAAATAAATT-TTATAATAAAAA
1 TAAATAAATTGATATAATAAAAA
*
8352436 TAAATAAATTGATATGATAAAAA
1 TAAATAAATTGATATAATAAAAA
8352459 -AAAT
1 TAAAT
8352463 TTTAATTCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (23 bp):
TAAATAAATTGATATAATAAAAA
Found at i:8352652 original size:21 final size:19
Alignment explanation
Indices: 8352627--8352675 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
8352617 TCTACTGTTT
8352627 TAATTTTAAGAATAATAATAA
1 TAATTTTAA-AATAA-AATAA
8352648 TAA-TTTAAAATAAAATAA
1 TAATTTTAAAATAAAATAA
8352666 TAATTATTAA
1 TAATT-TTAA
8352676 TTATATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 8 0.31
19 6 0.23
20 9 0.35
21 3 0.12
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (19 bp):
TAATTTTAAAATAAAATAA
Found at i:8352698 original size:10 final size:10
Alignment explanation
Indices: 8352683--8352719 Score: 51
Period size: 9 Copynumber: 3.9 Consensus size: 10
8352673 TAATTATATA
8352683 AAAAAAACAC
1 AAAAAAACAC
8352693 -AAAAAA-AC
1 AAAAAAACAC
*
8352701 AAAAAAACAG
1 AAAAAAACAC
8352711 AAAAAAACA
1 AAAAAAACA
8352720 GAAAGTAGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
8 2 0.08
9 12 0.50
10 10 0.42
ACGTcount: A:0.84, C:0.14, G:0.03, T:0.00
Consensus pattern (10 bp):
AAAAAAACAC
Found at i:8352706 original size:18 final size:18
Alignment explanation
Indices: 8352683--8352719 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
8352673 TAATTATATA
8352683 AAAAAAACACAAAAAAAC
1 AAAAAAACACAAAAAAAC
*
8352701 AAAAAAACAGAAAAAAAC
1 AAAAAAACACAAAAAAAC
8352719 A
1 A
8352720 GAAAGTAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.84, C:0.14, G:0.03, T:0.00
Consensus pattern (18 bp):
AAAAAAACACAAAAAAAC
Found at i:8352720 original size:10 final size:10
Alignment explanation
Indices: 8352683--8352723 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
8352673 TAATTATATA
*
8352683 AAAAAAACAC
1 AAAAAAACAG
8352693 AAAAAAAC--
1 AAAAAAACAG
8352701 AAAAAAACAG
1 AAAAAAACAG
8352711 AAAAAAACAG
1 AAAAAAACAG
8352721 AAA
1 AAA
8352724 GTAGGGTGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.28
10 21 0.72
ACGTcount: A:0.83, C:0.12, G:0.05, T:0.00
Consensus pattern (10 bp):
AAAAAAACAG
Found at i:8353064 original size:15 final size:15
Alignment explanation
Indices: 8353031--8353064 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8353021 ACCAGCCACG
* *
8353031 AAAACAGAAACATAA
1 AAAACAAAAACAAAA
8353046 AAAACAAAAACAAAA
1 AAAACAAAAACAAAA
8353061 AAAA
1 AAAA
8353065 AAGTCAAACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.82, C:0.12, G:0.03, T:0.03
Consensus pattern (15 bp):
AAAACAAAAACAAAA
Found at i:8354210 original size:16 final size:16
Alignment explanation
Indices: 8354189--8354245 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 16
8354179 AAACCCTTAA
8354189 AAATCCAAAATCCCTT
1 AAATCCAAAATCCCTT
* *
8354205 AAATCCAAACCTCCTCTA
1 AAATCCAAA-ATCC-CTT
8354223 AAATCC-AAA-CCCTT
1 AAATCCAAAATCCCTT
8354237 AAAT-CAAAA
1 AAATCCAAAA
8354246 CCCCAAACCT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
13 1 0.03
14 9 0.26
15 2 0.06
16 9 0.26
17 5 0.15
18 8 0.24
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (16 bp):
AAATCCAAAATCCCTT
Found at i:8354226 original size:18 final size:17
Alignment explanation
Indices: 8354188--8354233 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
8354178 AAAACCCTTA
*
8354188 AAAATCCAAA-ATCCCT
1 AAAATCCAAACCTCCCT
*
8354204 TAAATCCAAACCTCCTCT
1 AAAATCCAAACCTCC-CT
8354222 AAAATCCAAACC
1 AAAATCCAAACC
8354234 CTTAAATCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 9 0.36
17 3 0.12
18 13 0.52
ACGTcount: A:0.46, C:0.35, G:0.00, T:0.20
Consensus pattern (17 bp):
AAAATCCAAACCTCCCT
Found at i:8360313 original size:12 final size:13
Alignment explanation
Indices: 8360287--8360315 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8360277 AAATATCTTG
8360287 AAAAAAAAAGCAA
1 AAAAAAAAAGCAA
8360300 AAAAAAAAAG-AA
1 AAAAAAAAAGCAA
8360312 AAAA
1 AAAA
8360316 TGAAGTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.90, C:0.03, G:0.07, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAGCAA
Found at i:8360979 original size:18 final size:18
Alignment explanation
Indices: 8360956--8361009 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
8360946 ATGGGGGCAT
*
8360956 AAAAAAA-ATAAAAACAAC
1 AAAAAAAGAGAAAAA-AAC
*
8360974 AAAAAAAGAGAAAAAAAG
1 AAAAAAAGAGAAAAAAAC
8360992 AAAAAAAGAGAAGAAAAA
1 AAAAAAAGAGAA-AAAAA
8361010 ATTGGTCATG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
18 21 0.66
19 11 0.34
ACGTcount: A:0.83, C:0.04, G:0.11, T:0.02
Consensus pattern (18 bp):
AAAAAAAGAGAAAAAAAC
Found at i:8360989 original size:21 final size:21
Alignment explanation
Indices: 8360965--8361010 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
8360955 TAAAAAAAAT
8360965 AAAAACAACAAAAAAAG-AGAA
1 AAAAACAA-AAAAAAAGAAGAA
* *
8360986 AAAAAGAAAAAAAGAGAAGAA
1 AAAAACAAAAAAAAAGAAGAA
8361007 AAAA
1 AAAA
8361011 TTGGTCATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.83, C:0.04, G:0.13, T:0.00
Consensus pattern (21 bp):
AAAAACAAAAAAAAAGAAGAA
Found at i:8362390 original size:33 final size:33
Alignment explanation
Indices: 8362347--8362458 Score: 143
Period size: 33 Copynumber: 3.4 Consensus size: 33
8362337 TTTAAGCTCA
*
8362347 GAAGCATTTAAGCCCAGTTTATTTGGCCATCAAT
1 GAAGC-TTTAAGCCCAGTTTATCTGGCCATCAAT
*
8362381 GAAGCTTTAAGCCCAGTTTATCTAGCCATCAAT
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAAT
* * * * *
8362414 GAAACTTTAAACCCAATTTATCTGACCATTAAT
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAAT
*
8362447 GAAGTTTTAAGC
1 GAAGCTTTAAGC
8362459 TCAGAAGCAT
Statistics
Matches: 67, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
33 62 0.93
34 5 0.07
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32
Consensus pattern (33 bp):
GAAGCTTTAAGCCCAGTTTATCTGGCCATCAAT
Found at i:8362466 original size:81 final size:80
Alignment explanation
Indices: 8362381--8362538 Score: 210
Period size: 80 Copynumber: 2.0 Consensus size: 80
8362371 GGCCATCAAT
*
8362381 GAAGC-TTTAAGCCCAGTTTATCTAGCCATCAATGAAACTTTAAACCCAATTTATCTGACCATTA
1 GAAGCATTTAAG-CCAGTTTATCTAGCCATCAATG-AACTTTAAACCCAATTTATCTGACCATCA
**
8362445 ATGAAGTTTTAAGCTCA
64 ATGAAACTTTAAGCTCA
* * * * * *
8362462 GAAGCATTTAAGCTAGTTTATCTGGCCATCAATGAGCTTTTAGCCCAGTTTATCTGACCATCAAT
1 GAAGCATTTAAGCCAGTTTATCTAGCCATCAATGAACTTTAAACCCAATTTATCTGACCATCAAT
8362527 GAAACTTTAAGC
66 GAAACTTTAAGC
8362539 ATAGTTTATC
Statistics
Matches: 67, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 36 0.54
81 25 0.37
82 6 0.09
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (80 bp):
GAAGCATTTAAGCCAGTTTATCTAGCCATCAATGAACTTTAAACCCAATTTATCTGACCATCAAT
GAAACTTTAAGCTCA
Found at i:8362536 original size:113 final size:114
Alignment explanation
Indices: 8362272--8362571 Score: 421
Period size: 113 Copynumber: 2.6 Consensus size: 114
8362262 AAAAAAAAAA
* ** *
8362272 CTTTAAGCCCA-ATTATCTAGCC-TCAAATGAAGTTTTAAACCCAGTTTATCTGCTATTAATGAA
1 CTTTAAGCCCAGTTTATCTAGCCATC-AATGAAACTTTAAACCCAGTTTATCTGCCATTAATGAA
*
8362335 GTTTTAAGCTCAGAAGCATTTAAGCCCAGTTTATTTGGCCATCAATGAAG
65 GTTTTAAGCTCAGAAGCATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
*
8362385 CTTTAAGCCCAGTTTATCTAGCCATCAATGAAACTTTAAACCCAATTTATCTGACCATTAATGAA
1 CTTTAAGCCCAGTTTATCTAGCCATCAATGAAACTTTAAACCCAGTTTATCTG-CCATTAATGAA
*
8362450 GTTTTAAGCTCAGAAGCATTTAAG-CTAGTTTATCTGGCCATCAATG-AG
65 GTTTTAAGCTCAGAAGCATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
* * **
8362498 CTTTTAGCCCAGTTTATCT-GACCATCAATGAAACTTTAAGCATAGTTTATCTGGCCATTAATGA
1 CTTTAAGCCCAGTTTATCTAG-CCATCAATGAAACTTTAAACCCAGTTTATCT-GCCATTAATGA
*
8362562 AGCTTTAAGC
64 AGTTTTAAGC
8362572 CCAGCTTATC
Statistics
Matches: 169, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
112 1 0.01
113 77 0.46
114 55 0.33
115 36 0.21
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.34
Consensus pattern (114 bp):
CTTTAAGCCCAGTTTATCTAGCCATCAATGAAACTTTAAACCCAGTTTATCTGCCATTAATGAAG
TTTTAAGCTCAGAAGCATTTAAGCCCAGTTTATCTGGCCATCAATGAAG
Found at i:8362550 original size:33 final size:33
Alignment explanation
Indices: 8362462--8362734 Score: 363
Period size: 33 Copynumber: 8.3 Consensus size: 33
8362452 TTTAAGCTCA
*
8362462 GAAGCATTTAAG-CTAGTTTATCTGGCCATCAAT
1 GAAGC-TTTAAGCCCAGTTTATCTGGCCATCAAT
* *
8362495 G-AGCTTTTAGCCCAGTTTATCTGACCATCAAT
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAAT
* ** *
8362527 GAAACTTTAAGCATAGTTTATCTGGCCATTAAT
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAAT
*
8362560 GAAGCTTTAAGCCCAGCTTATCTGGCCATCAAT
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAAT
* *
8362593 GAGGCTTTAAACCCAGTTTATCTGGCC-TCAAAT
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATC-AAT
* * *
8362626 GAAGATTTAAGCCCAGTTTATTTGGCCATTAAT
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAAT
*
8362659 GAAGCTTTAAGCCCAGTTTATCTGGCCATTAAT
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAAT
*
8362692 GAAGCTTTAAGCCCAGTTTATCTGGCCATTAAT
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAAT
*
8362725 GAAGTTTTAA
1 GAAGCTTTAA
8362735 ACCATTAATG
Statistics
Matches: 211, Mismatches: 25, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
31 5 0.02
32 25 0.12
33 180 0.85
34 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (33 bp):
GAAGCTTTAAGCCCAGTTTATCTGGCCATCAAT
Found at i:8362589 original size:66 final size:66
Alignment explanation
Indices: 8362462--8362958 Score: 434
Period size: 66 Copynumber: 7.8 Consensus size: 66
8362452 TTTAAGCTCA
* * * *
8362462 GAAGCATTTAAG-CTAGTTTATCTGGCCATCAATG-AGCTTTTAGCCCAGTTTATCTGACCATCA
1 GAAGC-TTTAAGCCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCA
8362525 AT
65 AT
* ** *
8362527 GAAACTTTAAGCATAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGCTTATCTGGCCATCAA
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCAA
8362592 T
66 T
* * * * * *
8362593 GAGGCTTTAAACCCAGTTTATCTGGCC-TCAAATGAAGATTTAAGCCCAGTTTATTTGGCCATTA
1 GAAGCTTTAAGCCCAGTTTATCTGGCCAT-TAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCA
8362657 AT
65 AT
*
8362659 GAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATTAA
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCAA
8362724 T
66 T
* * * * * ** ** *
8362725 GAAGTTTTAA-ACCA--TTA-AT-G-AAGTT--TTAAG--TCCAG---TTTAT-T-TGGCCATCA
1 GAAGCTTTAAGCCCAGTTTATCTGGCCA-TTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCA
8362775 AT
65 AT
* * *
8362777 GAAGTTTTAAGCCCAGTTTATCTGGCC-TCAAATGAAGCTTTAAGCCCAGTTTATCTGGCCATTA
1 GAAGCTTTAAGCCCAGTTTATCTGGCCAT-TAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCA
8362841 AT
65 AT
* * *
8362843 GAAGC-TTAAGCCCAGTTTATCTGGCTATCAATG-A-CATTTAAGCCTAGTTTATCTGGCCATCA
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAGC-TTTAAGCCCAGTTTATCTGGCCATCA
8362905 AT
65 AT
* * * *
8362907 GAGGTTTTAAACCCAATTTAGT-TGGCC-TTCAATGAA--TTTAAGCCCAGTTTAT
1 GAAGCTTTAAGCCCAGTTTA-TCTGGCCATT-AATGAAGCTTTAAGCCCAGTTTAT
8362959 TTAGCCTCAA
Statistics
Matches: 350, Mismatches: 55, Indels: 55
0.76 0.12 0.12
Matches are distributed among these distances:
52 20 0.06
53 4 0.01
54 2 0.01
55 3 0.01
56 2 0.01
57 4 0.01
59 8 0.02
60 1 0.00
61 6 0.02
62 1 0.00
63 4 0.01
64 54 0.15
65 73 0.21
66 167 0.48
67 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (66 bp):
GAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCAA
T
Found at i:8362635 original size:99 final size:99
Alignment explanation
Indices: 8362462--8362958 Score: 535
Period size: 99 Copynumber: 5.2 Consensus size: 99
8362452 TTTAAGCTCA
* * *
8362462 GAAGCATTTAAG-CTAGTTTATCTGGCCATCAATGAGCTTTTAGCCCAGTTTATCTGACCATC-A
1 GAAGC-TTTAAGCCCAGTTTATCTGGCCATCAATGAGCTTTAAGCCCAGTTTATCTGGCCATCAA
**
8362525 ATGAA-ACTTTAAGCATAGTTTATCTGGCCATTAAT
65 ATGAAGA-TTTAAGCCCAGTTTATCTGGCCATTAAT
* *
8362560 GAAGCTTTAAGCCCAGCTTATCTGGCCATCAATGAGGCTTTAAACCCAGTTTATCTGGCC-TCAA
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAATGA-GCTTTAAGCCCAGTTTATCTGGCCATCAA
*
8362624 ATGAAGATTTAAGCCCAGTTTATTTGGCCATTAAT
65 ATGAAGATTTAAGCCCAGTTTATCTGGCCATTAAT
* *
8362659 GAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCAT-TA
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAATG-AGCTTTAAGCCCAGTTTATCTGGCCATCAA
*
8362723 ATGAAG-TTTTA----A----A-----CCATTAAT
65 ATGAAGATTTAAGCCCAGTTTATCTGGCCATTAAT
* * * *
8362744 GAAGTTTTAAGTCCAGTTTATTTGGCCATCAATGAAGTTTTAAGCCCAGTTTATCTGGCC-TCAA
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAATG-AGCTTTAAGCCCAGTTTATCTGGCCATCAA
*
8362808 ATGAAGCTTTAAGCCCAGTTTATCTGGCCATTAAT
65 ATGAAGATTTAAGCCCAGTTTATCTGGCCATTAAT
* *
8362843 GAAGC-TTAAGCCCAGTTTATCTGGCTATCAATGA-CATTTAAGCCTAGTTTATCTGGCCATC-A
1 GAAGCTTTAAGCCCAGTTTATCTGGCCATCAATGAGC-TTTAAGCCCAGTTTATCTGGCCATCAA
* * * *
8362905 ATGAGGTTTTAAACCCAATTTAGT-TGGCC-TTCAAT
65 ATGAAGATTTAAGCCCAGTTTA-TCTGGCCATT-AAT
8362940 GAA--TTTAAGCCCAGTTTAT
1 GAAGCTTTAAGCCCAGTTTAT
8362959 TTAGCCTCAA
Statistics
Matches: 343, Mismatches: 30, Indels: 54
0.80 0.07 0.13
Matches are distributed among these distances:
84 1 0.00
85 70 0.20
86 4 0.01
90 2 0.01
94 2 0.01
96 17 0.05
97 58 0.17
98 60 0.17
99 126 0.37
100 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (99 bp):
GAAGCTTTAAGCCCAGTTTATCTGGCCATCAATGAGCTTTAAGCCCAGTTTATCTGGCCATCAAA
TGAAGATTTAAGCCCAGTTTATCTGGCCATTAAT
Found at i:8362741 original size:19 final size:19
Alignment explanation
Indices: 8362717--8362753 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
8362707 GTTTATCTGG
8362717 CCATTAATGAAGTTTTAAA
1 CCATTAATGAAGTTTTAAA
8362736 CCATTAATGAAGTTTTAA
1 CCATTAATGAAGTTTTAA
8362754 GTCCAGTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.38
Consensus pattern (19 bp):
CCATTAATGAAGTTTTAAA
Found at i:8362753 original size:52 final size:52
Alignment explanation
Indices: 8362684--8362786 Score: 170
Period size: 52 Copynumber: 2.0 Consensus size: 52
8362674 GTTTATCTGG
*
8362684 CCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAGTTTTAAA
1 CCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCAATGAAGTTTTAAA
* * *
8362736 CCATTAATGAAGTTTTAAGTCCAGTTTATTTGGCCATCAATGAAGTTTTAA
1 CCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCAATGAAGTTTTAA
8362787 GCCCAGTTTA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (52 bp):
CCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCAATGAAGTTTTAAA
Found at i:8362778 original size:33 final size:33
Alignment explanation
Indices: 8362736--8362958 Score: 262
Period size: 33 Copynumber: 6.9 Consensus size: 33
8362726 AAGTTTTAAA
* * *
8362736 CCATTAATGAAGTTTTAAGTCCAGTTTATTTGG
1 CCATCAATGAAGTTTTAAGCCCAGTTTATCTGG
8362769 CCATCAATGAAGTTTTAAGCCCAGTTTATCTGG
1 CCATCAATGAAGTTTTAAGCCCAGTTTATCTGG
*
8362802 CC-TCAAATGAAGCTTTAAGCCCAGTTTATCTGG
1 CCATC-AATGAAGTTTTAAGCCCAGTTTATCTGG
* *
8362835 CCATTAATGAAG-CTTAAGCCCAGTTTATCTGG
1 CCATCAATGAAGTTTTAAGCCCAGTTTATCTGG
* *
8362867 CTATCAATGACA--TTTAAGCCTAGTTTATCTGG
1 CCATCAATGA-AGTTTTAAGCCCAGTTTATCTGG
* * *
8362899 CCATCAATGAGGTTTTAAACCCAATTTAGT-TGG
1 CCATCAATGAAGTTTTAAGCCCAGTTTA-TCTGG
*
8362932 CCTTCAATGAA--TTTAAGCCCAGTTTAT
1 CCATCAATGAAGTTTTAAGCCCAGTTTAT
8362959 TTAGCCTCAA
Statistics
Matches: 165, Mismatches: 19, Indels: 15
0.83 0.10 0.08
Matches are distributed among these distances:
30 1 0.01
31 13 0.08
32 56 0.34
33 93 0.56
34 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (33 bp):
CCATCAATGAAGTTTTAAGCCCAGTTTATCTGG
Found at i:8362811 original size:85 final size:85
Alignment explanation
Indices: 8362651--8362819 Score: 259
Period size: 85 Copynumber: 2.0 Consensus size: 85
8362641 GTTTATTTGG
*
8362651 CCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTG
1 CCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCAATGAAGCTTTAAGCCCAGTTTATCTG
* *
8362716 GCCATTAATGAAGTTTTAAA
66 GCCATAAATGAAGCTTTAAA
* * * *
8362736 CCATTAATGAAGTTTTAAGTCCAGTTTATTTGGCCATCAATGAAGTTTTAAGCCCAGTTTATCTG
1 CCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCAATGAAGCTTTAAGCCCAGTTTATCTG
8362801 GCC-TCAAATGAAGCTTTAA
66 GCCAT-AAATGAAGCTTTAA
8362820 GCCCAGTTTA
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
84 1 0.01
85 75 0.99
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (85 bp):
CCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCATCAATGAAGCTTTAAGCCCAGTTTATCTG
GCCATAAATGAAGCTTTAAA
Found at i:8362831 original size:118 final size:118
Alignment explanation
Indices: 8362623--8362846 Score: 387
Period size: 118 Copynumber: 1.9 Consensus size: 118
8362613 TCTGGCCTCA
*
8362623 AATGAAGATTTAAGCCCAGTTTATTTGGCCATTAATGAAGCTTTAAGCCCAGTTTATCTGGCCAT
1 AATGAAGATTTAAGCCCAGTTTATTTGGCCATCAATGAAGCTTTAAGCCCAGTTTATCTGGCCAT
*
8362688 TAATGAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAGTTTTAAACCATT
66 AAATGAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAGTTTTAAACCATT
* * *
8362741 AATGAAGTTTTAAGTCCAGTTTATTTGGCCATCAATGAAGTTTTAAGCCCAGTTTATCTGGCC-T
1 AATGAAGATTTAAGCCCAGTTTATTTGGCCATCAATGAAGCTTTAAGCCCAGTTTATCTGGCCAT
8362805 CAAATGAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
66 -AAATGAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAG
8362847 CTTAAGCCCA
Statistics
Matches: 100, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
117 1 0.01
118 99 0.99
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (118 bp):
AATGAAGATTTAAGCCCAGTTTATTTGGCCATCAATGAAGCTTTAAGCCCAGTTTATCTGGCCAT
AAATGAAGCTTTAAGCCCAGTTTATCTGGCCATTAATGAAGTTTTAAACCATT
Done.