Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 45 of 100
Found at i:8362979 original size:64 final size:64
Alignment explanation
Indices: 8362749--8362958 Score: 266
Period size: 64 Copynumber: 3.2 Consensus size: 64
8362739 TTAATGAAGT
* *
8362749 TTTAAGTCCAGTTTATTTGGCCATCAATGAAGTTTTAAGCCCAGTTTATCTGGCC-TCAAATGAA
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGTTTTAAGCCCAGTTTATCTGGCCTTC-AATGAA
* *
8362813 GCTTTAAGCCCAGTTTATCTGGCCATTAATGAAG-CTTAAGCCCAGTTTATCTGG-CTATCAATG
1 --TTTAAGCCCAGTTTATCTGGCCATCAATGAAGTTTTAAGCCCAGTTTATCTGGCCT-TCAATG
8362876 ACA
63 A-A
* * * *
8362879 TTTAAGCCTAGTTTATCTGGCCATCAATGAGGTTTTAAACCCAATTTAGT-TGGCCTTCAATGAA
1 TTTAAGCCCAGTTTATCTGGCCATCAATGAAGTTTTAAGCCCAGTTTA-TCTGGCCTTCAATGAA
8362943 TTTAAGCCCAGTTTAT
1 TTTAAGCCCAGTTTAT
8362959 TTAGCCTCAA
Statistics
Matches: 127, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
64 46 0.36
65 46 0.36
66 35 0.28
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (64 bp):
TTTAAGCCCAGTTTATCTGGCCATCAATGAAGTTTTAAGCCCAGTTTATCTGGCCTTCAATGAA
Found at i:8363624 original size:121 final size:121
Alignment explanation
Indices: 8363484--8363801 Score: 519
Period size: 121 Copynumber: 2.6 Consensus size: 121
8363474 AATTTAAAAT
* *
8363484 TTTTAAAGTTTCATTGCCTCTGATTATGAGGAGCATTTAAAGATTTTGAGATTTGTAAAACCTCC
1 TTTTAAAGTTTCATCGCCTCTGATTATGAGGAGCATTTAAAGATTTTGAGATTTGTAAGACCTCC
* *
8363549 GGGCATAATCTCTAAAAGCTTCTGCGCATGACTTTCAAGATTAAAAGATTTTCAAA
66 AGGCATAATCTCTAAAAGCCTCTGCGCATGACTTTCAAGATTAAAAGATTTTCAAA
* *
8363605 TTTTAAAGTTTCATCGCCTCTGATTATGATGAGCATTTAAAGATTTTGATATTTGTAAGACCTCC
1 TTTTAAAGTTTCATCGCCTCTGATTATGAGGAGCATTTAAAGATTTTGAGATTTGTAAGACCTCC
* *
8363670 ACGCATAATCTCTAAAAGCCTCTGCGCATGACTTTCAAGATTAAAAGATTTTTAAA
66 AGGCATAATCTCTAAAAGCCTCTGCGCATGACTTTCAAGATTAAAAGATTTTCAAA
* * * *
8363726 TTTTTAAGTTTCATCGCCTCTGATTATAAGGAGCATTCAAAGATTTTGAGATTTGTAAGATCTCC
1 TTTTAAAGTTTCATCGCCTCTGATTATGAGGAGCATTTAAAGATTTTGAGATTTGTAAGACCTCC
*
8363791 AGACATAATCT
66 AGGCATAATCT
8363802 TTAAGACCTC
Statistics
Matches: 181, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
121 181 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.36
Consensus pattern (121 bp):
TTTTAAAGTTTCATCGCCTCTGATTATGAGGAGCATTTAAAGATTTTGAGATTTGTAAGACCTCC
AGGCATAATCTCTAAAAGCCTCTGCGCATGACTTTCAAGATTAAAAGATTTTCAAA
Found at i:8363854 original size:22 final size:23
Alignment explanation
Indices: 8363803--8363863 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
8363793 ACATAATCTT
** *
8363803 TAAGACCTCCGAACATGATTCTG
1 TAAGACCTCCGGGCATGATTCTC
*
8363826 TAAGACCTTCGGGCATGATT-TC
1 TAAGACCTCCGGGCATGATTCTC
8363848 TAAGACCTCCGGGCAT
1 TAAGACCTCCGGGCAT
8363864 AAATTTCATT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
22 16 0.48
23 17 0.52
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (23 bp):
TAAGACCTCCGGGCATGATTCTC
Found at i:8364136 original size:110 final size:110
Alignment explanation
Indices: 8364000--8364227 Score: 291
Period size: 110 Copynumber: 2.1 Consensus size: 110
8363990 GTATGATATT
* * *
8364000 TAAGACTTTCAGGCATAATTTCGATTCACGGTGTTATCCCGATCAA-TCATTTATCTTTCGACTT
1 TAAGACCTCCAGGCATAATTTCGATTCACGGTGTTATCCCAATCAATTC-TTTATCTTTCGACTT
* * *
8364064 ACGGTGTTATCTCAATCGATTCTGTAAGACCTCC-GAGCATAATTTC
65 ACGATGTTATCCCAATCAATTCTGTAAGACCTCCGGA-CATAATTTC
* *
8364110 TAAGACCTCCAGGCATAAATTT-GATTCGCGGTGTTATCCCAATCAATTCTTTATCTTTTGACTT
1 TAAGACCTCCAGGCAT-AATTTCGATTCACGGTGTTATCCCAATCAATTCTTTATCTTTCGACTT
* * * * *
8364174 ATGATGTTATCCCAGTCAATTCTGTAAGAGCTCCGGACATGATTTT
65 ACGATGTTATCCCAATCAATTCTGTAAGACCTCCGGACATAATTTC
8364220 TAAGACCT
1 TAAGACCT
8364228 TCGAGCAATT
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
110 93 0.91
111 9 0.09
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (110 bp):
TAAGACCTCCAGGCATAATTTCGATTCACGGTGTTATCCCAATCAATTCTTTATCTTTCGACTTA
CGATGTTATCCCAATCAATTCTGTAAGACCTCCGGACATAATTTC
Found at i:8364394 original size:176 final size:176
Alignment explanation
Indices: 8364082--8364406 Score: 397
Period size: 176 Copynumber: 1.8 Consensus size: 176
8364072 ATCTCAATCG
* *
8364082 ATTCTGTAAGACCTCCGAGCATAATTTCTAAGACCTCCAGGCATAAATTTGATTCGCGGTGTTAT
1 ATTCTATAAGACCTCCGAGCATAATTTCTAAGACCTCCAGGCATAAATTTGATTCGCGGTATTAT
* *
8364147 CCCAATCAATTCTTTATCTTTTGACTTATGATGTTATCCCAGTCAATTCTGTAAGAGCTCCGGAC
66 CCCAATCAATTCTTTATCTTTTGACTTATGATGTTATCCCAATCAATTCTGTAAGACCTCCGGAC
* *
8364212 ATGATTTTTAAGACCTTCGAGCAATTCTGTAAGACCTCCAGACATA
131 ATGATTTCTAAAACCTTCGAGCAATTCTGTAAGACCTCCAGACATA
* * ** *
8364258 ATTCTATAAGACCTCCGGGCATGATTTCTAAGACCT-TTGAGCAT-AATTTCGATTCGTGGTATT
1 ATTCTATAAGACCTCCGAGCATAATTTCTAAGACCTCCAG-GCATAAATTT-GATTCGCGGTATT
* ** * * * * * **
8364321 TTTTCGATCGATTTTTTATCTTTT-AGCTTGTGGTGTTATTGCAATCAATT-TCGTAAGACCTCC
64 ATCCCAATCAATTCTTTATCTTTTGA-CTTATGATGTTATCCCAATCAATTCT-GTAAGACCTCC
8364384 GGACATGATTTCTAAAACCTTCG
127 GGACATGATTTCTAAAACCTTCG
8364407 GGCATAAATT
Statistics
Matches: 124, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
175 8 0.06
176 116 0.94
ACGTcount: A:0.26, C:0.21, G:0.17, T:0.37
Consensus pattern (176 bp):
ATTCTATAAGACCTCCGAGCATAATTTCTAAGACCTCCAGGCATAAATTTGATTCGCGGTATTAT
CCCAATCAATTCTTTATCTTTTGACTTATGATGTTATCCCAATCAATTCTGTAAGACCTCCGGAC
ATGATTTCTAAAACCTTCGAGCAATTCTGTAAGACCTCCAGACATA
Found at i:8364466 original size:110 final size:110
Alignment explanation
Indices: 8364257--8364520 Score: 347
Period size: 110 Copynumber: 2.4 Consensus size: 110
8364247 CTCCAGACAT
* * * * *
8364257 AATTCTATAAGACCTCCGGGCATGATTTCTAAGACCTTTGAGCATAATTTCGATTCGTGGTATTT
1 AATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTTCGAGCATAATTTCGATTCGCGGTATTA
* * **
8364322 TTTCGATCGATTTTTTATCTTTTAGCTTGTGGTGTTAT-TGCAATC
66 TTTCGATCAATTCTTTATCTTTTAGCTTACGGTGTTATCT-CAATC
* * *
8364367 AATT-TCGTAAGACCTCCGGACATGATTTCTAAAACCTTCGGGCATAAATTT-GATTCGCGGTGT
1 AATTCT-GTAAGACCTCCGGACATGATTTCTAAGACCTTCGAGCAT-AATTTCGATTCGCGGTAT
8364430 TATTTCGATCAATTCTTTATCTTTT-GACTTACGGTGTTATCTCAATC
64 TATTTCGATCAATTCTTTATCTTTTAG-CTTACGGTGTTATCTCAATC
*
8364477 AATTCTGTAAGACCTCCGGACATGATTTTTAAGACCTTCGAGCA
1 AATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTTCGAGCA
8364521 ATTCTATAAG
Statistics
Matches: 134, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
109 2 0.01
110 125 0.93
111 7 0.05
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.39
Consensus pattern (110 bp):
AATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTTCGAGCATAATTTCGATTCGCGGTATTA
TTTCGATCAATTCTTTATCTTTTAGCTTACGGTGTTATCTCAATC
Found at i:8364512 original size:22 final size:22
Alignment explanation
Indices: 8364484--8364593 Score: 102
Period size: 22 Copynumber: 5.0 Consensus size: 22
8364474 ATCAATTCTG
*
8364484 TAAGACCTCCGGACATGATTTT
1 TAAGACCTCCGGACATAATTTT
* *
8364506 TAAGACCTTC-GAGC--AATTCTA
1 TAAGACCTCCGGA-CATAATT-TT
8364527 TAAGACCTCCAGG-CATAATTTT
1 TAAGACCTCC-GGACATAATTTT
* * *
8364549 GTAAGACCTTCGGGCATGATTTT
1 -TAAGACCTCCGGACATAATTTT
8364572 TAAGACCTCCGGACATAATTTT
1 TAAGACCTCCGGACATAATTTT
8364594 GATTCGCGGT
Statistics
Matches: 70, Mismatches: 10, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
20 3 0.04
21 13 0.19
22 32 0.46
23 22 0.31
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (22 bp):
TAAGACCTCCGGACATAATTTT
Found at i:8364524 original size:286 final size:285
Alignment explanation
Indices: 8364013--8364905 Score: 1082
Period size: 286 Copynumber: 3.1 Consensus size: 285
8364003 GACTTTCAGG
* * * ** *
8364013 CATAATTTCGATTCACGGTGTTATCCCGATC-AATCATTTATCTTTCGACTTACGGTGTTATCTC
1 CATAATTTCGATTCGCGGTATTATCCCGATCGATTC-TTTATCTTTTAACTTATGGTGTTAT-TC
*
8364077 AATCGATTCTGTAAGACCTCC-GAGCATAATTTCTAAGACCTCCAGGCATAAATTTGATTCGCGG
64 AATCGATTCTGTAAGACCTCCGGA-CATGATTTCTAAGACCTCCAGGCATAAATTTGATTCGCGG
* * * * *
8364141 TGTTATCCCAATCAATTCTTTATCTTTTGACTTATGATGTTATCCCAGTCAATTCTGTAAGAGCT
128 TGTTATTCCGATCAATTCTTTATCTTTTGACTTACGGTGTTATCCCAGTCAATTCTGTAAGACCT
*
8364206 CCGGACATGATTTTTAAGACCTTCGAGCAATTCTGTAAGACCTCCAGACATAATTCTATAAGACC
193 CCGGACATGATTTTTAAGACCTTCGAGCAATTCTATAAGACCTCCAGACATAATTCTATAAGACC
**
8364271 TCCGGGCATGATTTCTAAGACCT-TTGA
258 TCCGGGCATGATTTCTAAGACCTCCGGA
* * ** * * *
8364298 GCATAATTTCGATTCGTGGTATTTTTTCGATCGATTTTTTATCTTTTAGCTTGTGGTGTTATTGC
1 -CATAATTTCGATTCGCGGTATTATCCCGATCGATTCTTTATCTTTTAACTTATGGTGTTATT-C
* * * *
8364363 AATCAATT-TCGTAAGACCTCCGGACATGATTTCTAAAACCTTCGGGCATAAATTTGATTCGCGG
64 AATCGATTCT-GTAAGACCTCCGGACATGATTTCTAAGACCTCCAGGCATAAATTTGATTCGCGG
* * *
8364427 TGTTATTTCGATCAATTCTTTATCTTTTGACTTACGGTGTTATCTCAATCAATTCTGTAAGACCT
128 TGTTATTCCGATCAATTCTTTATCTTTTGACTTACGGTGTTATCCCAGTCAATTCTGTAAGACCT
* * *
8364492 CCGGACATGATTTTTAAGACCTTCGAGCAATTCTATAAGACCTCCAGGCATAATTTTGTAAGACC
193 CCGGACATGATTTTTAAGACCTTCGAGCAATTCTATAAGACCTCCAGACATAATTCTATAAGACC
* *
8364557 TTCGGGCATGATTTTTAAGACCTCCGGA
258 TCCGGGCATGATTTCTAAGACCTCCGGA
* * *
8364585 CATAATTTTGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTTAACTTATGGTATTATTCCA
1 CATAATTTCGATTCGCGGTATTATCCCGATCGATTCTTTATCTTTTAACTTATGGTGTTATT-CA
* * * * *
8364650 ATCGATTCTGTAAGACTTTCGGGCATGATTTCTAAGACCTCCAGGCGTAAATTTGATTCGCGATG
65 ATCGATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTCCAGGCATAAATTTGATTCGCGGTG
*
8364715 TTA-TCCGATCAATTCTTTATCTTTTGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCC
130 TTATTCCGATCAATTCTTTATCTTTTGACTTACGGTGTTATCCCAGTCAATTCTGTAAGACCTCC
* * * * * * * * *
8364779 GGGCATGATTTTTAAGACC-TCCAGGCAATTTTATAAGACTTTTC-GGCATGATTTTGTAAGACC
195 GGACATGATTTTTAAGACCTTCGA-GCAATTCTATAAGAC-CTCCAGACATAATTCTATAAGACC
* * * * *
8364842 TTCAGGACATGATTTGC-AAGACTTTCGGG
258 -TCCGGGCATGATTT-CTAAGACCTCCGGA
* ** *
8364871 CATAAATTCGATTCGCAATATTATCTCGATCGATT
1 CATAATTTCGATTCGCGGTATTATCCCGATCGATT
8364906 TATTATTTTT
Statistics
Matches: 520, Mismatches: 77, Indels: 20
0.84 0.12 0.03
Matches are distributed among these distances:
284 3 0.01
285 109 0.21
286 401 0.77
287 7 0.01
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.37
Consensus pattern (285 bp):
CATAATTTCGATTCGCGGTATTATCCCGATCGATTCTTTATCTTTTAACTTATGGTGTTATTCAA
TCGATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTCCAGGCATAAATTTGATTCGCGGTGT
TATTCCGATCAATTCTTTATCTTTTGACTTACGGTGTTATCCCAGTCAATTCTGTAAGACCTCCG
GACATGATTTTTAAGACCTTCGAGCAATTCTATAAGACCTCCAGACATAATTCTATAAGACCTCC
GGGCATGATTTCTAAGACCTCCGGA
Found at i:8364548 original size:43 final size:44
Alignment explanation
Indices: 8364476--8364594 Score: 154
Period size: 43 Copynumber: 2.7 Consensus size: 44
8364466 TTATCTCAAT
* *
8364476 CAATTCTGTAAGACCTCCGGACATGATTTT-TAAGACCTTCGAG
1 CAATTCTATAAGACCTCCGGACATAATTTTGTAAGACCTTCGAG
*
8364519 CAATTCTATAAGACCTCCAGG-CATAATTTTGTAAGACCTTCGGG
1 CAATTCTATAAGACCTCC-GGACATAATTTTGTAAGACCTTCGAG
*
8364563 CATGATT-TTTAAGACCTCCGGACATAATTTTG
1 CA--ATTCTATAAGACCTCCGGACATAATTTTG
8364595 ATTCGCGGTG
Statistics
Matches: 67, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
43 25 0.37
44 18 0.27
45 21 0.31
46 3 0.04
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
CAATTCTATAAGACCTCCGGACATAATTTTGTAAGACCTTCGAG
Found at i:8364679 original size:176 final size:176
Alignment explanation
Indices: 8364367--8364689 Score: 459
Period size: 176 Copynumber: 1.8 Consensus size: 176
8364357 TATTGCAATC
* *
8364367 AATTTCGTAAGACCTCCGGACATGATTTCTAAAACCTTCGGGCATAAATTTGATTCGCGGTGTTA
1 AATTTCGTAAGACCTCCGGACATGATTTCTAAAACCTCCGGACATAAATTTGATTCGCGGTGTTA
** * *
8364432 TTTCGATCAATTCTTTATCTTTTGACTTACGGTGTTATCTCAATCAATTCTGTAAGACCTCCGGA
66 TCCCGATCAATTCTTTATCTTTTAACTTACGGTATTATCTCAATCAATTCTGTAAGACCTCCGGA
*
8364497 CATGATTTTTAAGACCTTCGAGCAATTCTATAAGACCTCCAGGCAT
131 CATGATTTCTAAGACCTTCGAGCAATTCTATAAGACCTCCAGGCAT
* * * * * *
8364543 AATTTTGTAAGACCTTCGGGCATGATTTTTAAGACCTCCGGACATAATTTTGATTCGCGGTGTTA
1 AATTTCGTAAGACCTCCGGACATGATTTCTAAAACCTCCGGACATAAATTTGATTCGCGGTGTTA
* * * * *
8364608 TCCCGATCGATTCTTTATCTTTTAACTTATGGTATTAT-TCCAATCGATTCTGTAAGACTTTCGG
66 TCCCGATCAATTCTTTATCTTTTAACTTACGGTATTATCT-CAATCAATTCTGTAAGACCTCCGG
*
8364672 GCATGATTTCTAAGACCT
130 ACATGATTTCTAAGACCT
8364690 CCAGGCGTAA
Statistics
Matches: 127, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
175 1 0.01
176 126 0.99
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.37
Consensus pattern (176 bp):
AATTTCGTAAGACCTCCGGACATGATTTCTAAAACCTCCGGACATAAATTTGATTCGCGGTGTTA
TCCCGATCAATTCTTTATCTTTTAACTTACGGTATTATCTCAATCAATTCTGTAAGACCTCCGGA
CATGATTTCTAAGACCTTCGAGCAATTCTATAAGACCTCCAGGCAT
Found at i:8364788 original size:109 final size:110
Alignment explanation
Indices: 8364543--8364805 Score: 368
Period size: 109 Copynumber: 2.4 Consensus size: 110
8364533 CTCCAGGCAT
* * *
8364543 AATTTTGTAAGACCTTCGGGCATGATTTTTAAGACCTCC-GGACATAATTTTGATTCGCGGTGTT
1 AATTCTGTAAGACCTTCGGGCATGATTTTTAAGACCTCCAGG-CATAAATTTGATTCGCGATGTT
* * *
8364607 ATCCCGATCGATTCTTTATCTTTTAACTTATGGTATTATTCCAATC
65 ATCCCGATCAATTCTTTATCTTTTAACTTACGGTATTATCCCAATC
* * * *
8364653 GATTCTGTAAGACTTTCGGGCATGATTTCTAAGACCTCCAGGCGTAAATTTGATTCGCGATGTTA
1 AATTCTGTAAGACCTTCGGGCATGATTTTTAAGACCTCCAGGCATAAATTTGATTCGCGATGTTA
* * * *
8364718 T-CCGATCAATTCTTTATCTTTTGACTTGCGGTGTTATCCCAGTC
66 TCCCGATCAATTCTTTATCTTTTAACTTACGGTATTATCCCAATC
*
8364762 AATTCTGTAAGACCTCCGGGCATGATTTTTAAGACCTCCAGGCA
1 AATTCTGTAAGACCTTCGGGCATGATTTTTAAGACCTCCAGGCA
8364806 ATTTTATAAG
Statistics
Matches: 133, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
109 75 0.56
110 56 0.42
111 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (110 bp):
AATTCTGTAAGACCTTCGGGCATGATTTTTAAGACCTCCAGGCATAAATTTGATTCGCGATGTTA
TCCCGATCAATTCTTTATCTTTTAACTTACGGTATTATCCCAATC
Found at i:8364797 original size:22 final size:23
Alignment explanation
Indices: 8364769--8364856 Score: 76
Period size: 22 Copynumber: 3.9 Consensus size: 23
8364759 GTCAATTCTG
8364769 TAAGACCTCCGGGCATGATTTT-
1 TAAGACCTCCGGGCATGATTTTA
*
8364791 TAAGACCTCCAGGCA--ATTTTA
1 TAAGACCTCCGGGCATGATTTTA
* * *
8364812 TAAGACTTTTC-GGCATGATTTTG
1 TAAGAC-CTCCGGGCATGATTTTA
* *
8364835 TAAGACCTTCAGGACATGATTT
1 TAAGACC-TCCGGGCATGATTT
8364857 GCAAGACTTT
Statistics
Matches: 52, Mismatches: 8, Indels: 10
0.74 0.11 0.14
Matches are distributed among these distances:
20 5 0.10
21 10 0.19
22 16 0.31
23 12 0.23
24 9 0.17
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (23 bp):
TAAGACCTCCGGGCATGATTTTA
Found at i:8364838 original size:23 final size:25
Alignment explanation
Indices: 8364806--8364866 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 25
8364796 CCTCCAGGCA
*
8364806 ATTTTATAAGACTTTTC-GG-CATG
1 ATTTTGTAAGACTTTTCAGGACATG
*
8364829 ATTTTGTAAGAC-CTTCAGGACATG
1 ATTTTGTAAGACTTTTCAGGACATG
*
8364853 A-TTTGCAAGACTTT
1 ATTTTGTAAGACTTT
8364867 CGGGCATAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
22 3 0.10
23 22 0.71
24 6 0.19
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (25 bp):
ATTTTGTAAGACTTTTCAGGACATG
Found at i:8365094 original size:21 final size:20
Alignment explanation
Indices: 8365069--8365118 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
8365059 TCTATTGTTT
8365069 TAATTTTAATAATAATAATAA
1 TAATTTTAATAATAA-AATAA
8365090 TAA-TTTAA-AATAAAATAA
1 TAATTTTAATAATAAAATAA
8365108 TAATTATTAAT
1 TAATT-TTAAT
8365119 TATATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 8 0.31
19 6 0.23
20 9 0.35
21 3 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
TAATTTTAATAATAAAATAA
Found at i:8365111 original size:24 final size:27
Alignment explanation
Indices: 8365076--8365134 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
8365066 TTTTAATTTT
* *
8365076 AATAATAA-TAATAATAATTTAAAATAA
1 AATAATAATTAATAATTATATAAAA-AA
*
8365103 AATAATAATTATTAATTATATAAAAAA
1 AATAATAATTAATAATTATATAAAAAA
8365130 AATAA
1 AATAA
8365135 AAAAACAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 15 0.54
28 13 0.46
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (27 bp):
AATAATAATTAATAATTATATAAAAAA
Found at i:8367673 original size:25 final size:25
Alignment explanation
Indices: 8367643--8367692 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
8367633 GCTGAAGGAA
*
8367643 GAAAAGAAAAGGAAGTTGCCAAAAG
1 GAAAAGAAAAGGAAGCTGCCAAAAG
* *
8367668 GAAAAGAAGAGGAAGCTGCCGAAAG
1 GAAAAGAAAAGGAAGCTGCCAAAAG
8367693 TGGAAGAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.52, C:0.10, G:0.32, T:0.06
Consensus pattern (25 bp):
GAAAAGAAAAGGAAGCTGCCAAAAG
Found at i:8369851 original size:23 final size:23
Alignment explanation
Indices: 8369820--8369897 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
8369810 TTAATTTGTG
*
8369820 ACAATGTAGTATTAATATAATTT
1 ACAACGTAGTATTAATATAATTT
* * *
8369843 ACAACGTAGTGTTATGTTGTAATTAGT
1 ACAACGTAGTATTA--ATATAATT--T
* *
8369870 GTCAACGTAGTATTAATAAAATTT
1 -ACAACGTAGTATTAATATAATTT
8369894 ACAA
1 ACAA
8369898 TTTCATTTGA
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
23 15 0.38
24 1 0.03
25 6 0.15
26 5 0.12
27 1 0.03
28 12 0.30
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (23 bp):
ACAACGTAGTATTAATATAATTT
Found at i:8372466 original size:2 final size:2
Alignment explanation
Indices: 8372459--8372490 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8372449 CTAAAAGCTG
*
8372459 AT AT AT AT AT AT AT AT AT AT AC AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8372491 TTATTTTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8372550 original size:58 final size:56
Alignment explanation
Indices: 8372461--8372575 Score: 212
Period size: 58 Copynumber: 2.0 Consensus size: 56
8372451 AAAAGCTGAT
8372461 ATATATATATATATATATACATATATATATTTATTTTGTGGACTAAACATCAACAG
1 ATATATATATATATATATACATATATATATTTATTTTGTGGACTAAACATCAACAG
8372517 ATATATATATATATATATACATATATATTTATTTATTTTGTGGACTAAACATCAACAG
1 ATATATATATATATATATACATATATA--TATTTATTTTGTGGACTAAACATCAACAG
8372575 A
1 A
8372576 AATGTCTTTA
Statistics
Matches: 57, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
56 27 0.47
58 30 0.53
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.42
Consensus pattern (56 bp):
ATATATATATATATATATACATATATATATTTATTTTGTGGACTAAACATCAACAG
Found at i:8382157 original size:23 final size:23
Alignment explanation
Indices: 8382130--8382190 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
8382120 ATAATTTTGA
8382130 AAATATTATTTTATATTTTTAAT
1 AAATATTATTTTATATTTTTAAT
* *
8382153 AAATATAATTTTATAATTTTAAT
1 AAATATTATTTTATATTTTTAAT
8382176 ---TATTATTTTAATATT
1 AAATATTATTTT-ATATT
8382191 GATTATTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 8 0.24
21 4 0.12
23 21 0.64
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
AAATATTATTTTATATTTTTAAT
Found at i:8382780 original size:36 final size:36
Alignment explanation
Indices: 8382739--8382813 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
8382729 AATTCAACAT
*
8382739 ATTTTTTCTTTAAATATAATCTTAATTAGTGTCGCC
1 ATTTTTTCTTTAAATATAACCTTAATTAGTGTCGCC
8382775 ATTTTTTCTTTAAATATAACCTTAATTAGTGTCGCC
1 ATTTTTTCTTTAAATATAACCTTAATTAGTGTCGCC
8382811 ATT
1 ATT
8382814 ATTAAAATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.28, C:0.15, G:0.08, T:0.49
Consensus pattern (36 bp):
ATTTTTTCTTTAAATATAACCTTAATTAGTGTCGCC
Found at i:8383113 original size:20 final size:21
Alignment explanation
Indices: 8383071--8383122 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
8383061 TATTTCATTT
*
8383071 AAATTTTAAAATATATTTCAA
1 AAATTTTAAAATATAATTCAA
*
8383092 AAATTTT-AAATATTAATTAAAA
1 AAATTTTAAAATA-TAATT-CAA
8383114 AAATTTTAA
1 AAATTTTAA
8383123 GCCCTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 5 0.19
21 11 0.42
22 9 0.35
23 1 0.04
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (21 bp):
AAATTTTAAAATATAATTCAA
Found at i:8383114 original size:21 final size:22
Alignment explanation
Indices: 8383071--8383122 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
8383061 TATTTCATTT
**
8383071 AAATTTTAAAATAT-ATTTCAA
1 AAATTTTAAAATATAATTAAAA
8383092 AAATTTT-AAATATTAATTAAAA
1 AAATTTTAAAATA-TAATTAAAA
8383114 AAATTTTAA
1 AAATTTTAA
8383123 GCCCTTTATG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 5 0.19
21 8 0.31
22 12 0.46
23 1 0.04
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AAATTTTAAAATATAATTAAAA
Found at i:8388083 original size:15 final size:16
Alignment explanation
Indices: 8388052--8388108 Score: 64
Period size: 16 Copynumber: 3.6 Consensus size: 16
8388042 TATTTTTTAA
8388052 TTATTTA-ATTAATTTT
1 TTATTTATA-TAATTTT
8388068 TTATTTATAT-ATTTT
1 TTATTTATATAATTTT
* *
8388083 TTATATATTTAATTTT
1 TTATTTATATAATTTT
*
8388099 ATATTTATAT
1 TTATTTATAT
8388109 TTAAAATAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
15 13 0.38
16 20 0.59
17 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTATTTATATAATTTT
Found at i:8388109 original size:18 final size:18
Alignment explanation
Indices: 8388086--8388133 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
8388076 ATATTTTTTA
8388086 TATATTTAATTTTATATT
1 TATATTTAATTTTATATT
** *
8388104 TATATTTAAAATAATATT
1 TATATTTAATTTTATATT
8388122 T-TA-TTAATTTTA
1 TATATTTAATTTTA
8388134 AATCAAGTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
16 6 0.25
17 2 0.08
18 16 0.67
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (18 bp):
TATATTTAATTTTATATT
Found at i:8390110 original size:25 final size:27
Alignment explanation
Indices: 8390082--8390138 Score: 73
Period size: 25 Copynumber: 2.1 Consensus size: 27
8390072 TCAAAATTTT
8390082 TAAAAATATATTAA-ATA-TTAAAAAA
1 TAAAAATATATTAATATATTTAAAAAA
* *
8390107 TAAAAATATTTTAATTATATTTTAAAAA
1 TAAAAATATATTAA-TATATTTAAAAAA
8390135 TAAA
1 TAAA
8390139 GTTAAAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 13 0.48
27 3 0.11
28 11 0.41
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (27 bp):
TAAAAATATATTAATATATTTAAAAAA
Found at i:8391490 original size:16 final size:16
Alignment explanation
Indices: 8391456--8391514 Score: 75
Period size: 16 Copynumber: 3.6 Consensus size: 16
8391446 AGGTATGAAA
*
8391456 TTTTGGATTTTGGGGGG
1 TTTTGGATTTT-AGGGG
8391473 TTTTGGATTTTAGGGG
1 TTTTGGATTTTAGGGG
*
8391489 TTTCGGATTTTAGGAGG
1 TTTTGGATTTTAGG-GG
8391506 -TTTGGATTT
1 TTTTGGATTT
8391515 AAGAGATTTT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
16 25 0.66
17 13 0.34
ACGTcount: A:0.12, C:0.02, G:0.37, T:0.49
Consensus pattern (16 bp):
TTTTGGATTTTAGGGG
Found at i:8391935 original size:24 final size:25
Alignment explanation
Indices: 8391908--8391969 Score: 60
Period size: 24 Copynumber: 2.6 Consensus size: 25
8391898 CTTATTATGC
8391908 ATAAATATAAAAAAT-ATACT-TAAA
1 ATAAATATAAAAAATAATA-TATAAA
* *
8391932 ATAACTA-AAATAATAATATATAAA
1 ATAAATATAAAAAATAATATATAAA
*
8391956 A-AAATTTAAAAAAT
1 ATAAATATAAAAAAT
8391970 TTTTTTACCT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
23 10 0.33
24 20 0.67
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (25 bp):
ATAAATATAAAAAATAATATATAAA
Found at i:8393434 original size:109 final size:110
Alignment explanation
Indices: 8393233--8393553 Score: 315
Period size: 109 Copynumber: 2.9 Consensus size: 110
8393223 TTATGCCCGA
* * * * * * * *
8393233 AGGTCTTATAAAATCGACTGGGATAAGA-TCATAAGTTAAAAAATAAGGAATCGATCGGGATAAC
1 AGGTTTTACAAAATCGACTGGGATAACACT-ACAAGTCAAAAGATAAAGAATTGATCGGGATAAC
* * * * *
8393297 ACCGCGAATCAAATTTAGGCTCGGAGGTCTTAGACATCATGTCCGG
65 ACCGCGAATCAAATTTAGGCCCAGAGGTCTTAAAAATCATGTCCAG
* ** * *
8393343 AGGTTTTACAAAATCGATTGGGATAACACTGTAAGTCGAAAGATAAA-AATTGATCGGGCTAACA
1 AGGTTTTACAAAATCGACTGGGATAACACTACAAGTCAAAAGATAAAGAATTGATCGGGATAACA
* * *
8393407 CCGTGAATCGAAA-TTATGCCCAGAGGTCTTAAAAATCATGTCTAG
66 CCGCGAATC-AAATTTAGGCCCAGAGGTCTTAAAAATCATGTCCAG
* ** *
8393452 AGGTTTTACAGAATCGACTGGGATAACACTACAAGTCAAAAGATAAAGAATTGATTAGGATAACG
1 AGGTTTTACAAAATCGACTGGGATAACACTACAAGTCAAAAGATAAAGAATTGATCGGGATAACA
* * * * * *
8393517 TCACGAATCGAATTTATGCCCGGAAGTCTTACAAAAT
66 CCGCGAATCAAATTTAGGCCCAGAGGTCTTA-AAAAT
8393554 TGACCGAAAT
Statistics
Matches: 172, Mismatches: 34, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
109 92 0.53
110 74 0.43
111 6 0.03
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (110 bp):
AGGTTTTACAAAATCGACTGGGATAACACTACAAGTCAAAAGATAAAGAATTGATCGGGATAACA
CCGCGAATCAAATTTAGGCCCAGAGGTCTTAAAAATCATGTCCAG
Found at i:8393611 original size:88 final size:88
Alignment explanation
Indices: 8393474--8393723 Score: 320
Period size: 88 Copynumber: 2.8 Consensus size: 88
8393464 ATCGACTGGG
* * * ** * *
8393474 ATAACACTACAAGTCAAAAGATAAAGAATTGATTAGGATAACGTCACGAATCGAATTTATGCCCG
1 ATAACACCATAAGTCAAAAGATAAAGAATCGATCGGGATAACATCACGAATCGAAATTATGCCCG
*
8393539 GAAGTCTTACAAAATTGACCGAA
66 GAAGTCTTACAAAATCGACCGAA
* *
8393562 ATAACACCATAAGTTAAAAGATAAAGAATCGATCGGGATAACATTACGAATCGAAATTATGCCCG
1 ATAACACCATAAGTCAAAAGATAAAGAATCGATCGGGATAACATCACGAATCGAAATTATGCCCG
* * * * *
8393627 GAGGTCTTATAGAATCGACTGAG
66 GAAGTCTTACAAAATCGACCGAA
* * * **
8393650 ATAACACCATAAGTCAAAAGATAAAGAATCGATCGGGATAACACCGCGAATCAAAATTATGCCTA
1 ATAACACCATAAGTCAAAAGATAAAGAATCGATCGGGATAACATCACGAATCGAAATTATGCCCG
8393715 GAAGTCTTA
66 GAAGTCTTA
8393724 GAAATCATGT
Statistics
Matches: 139, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 139 1.00
ACGTcount: A:0.43, C:0.17, G:0.18, T:0.22
Consensus pattern (88 bp):
ATAACACCATAAGTCAAAAGATAAAGAATCGATCGGGATAACATCACGAATCGAAATTATGCCCG
GAAGTCTTACAAAATCGACCGAA
Found at i:8393784 original size:110 final size:109
Alignment explanation
Indices: 8393614--8393862 Score: 338
Period size: 110 Copynumber: 2.3 Consensus size: 109
8393604 ATTACGAATC
* * * *
8393614 GAAATTATGCCCGGAGGTCTTATAGAATCGACTGAGATAACACCATAAGTCAAAAGATAAAGAAT
1 GAAATCATG-CCGAAGGTCTTATAGAATCGACTGAGATAACACCACAAGTCAAAAAATAAAGAAT
* * *
8393679 CGATCGGGATAACACCGCGAATCAAAATTATGC-CTAGAAGTCTTA
65 CAATCGGGATAACACCACAAATCAAAATTATGCTC-AGAAGTCTTA
*
8393724 GAAATCATGTCCGAAGGTCTTATAGAATCGACTGGGATAACACCACAAGTCAAAAAATAAAGAAT
1 GAAATCATG-CCGAAGGTCTTATAGAATCGACTGAGATAACACCACAAGTCAAAAAATAAAGAAT
* * *
8393789 CAATCGGGATAACATCACAAATCAAAATTATGCTCGGAGGTCTTA
65 CAATCGGGATAACACCACAAATCAAAATTATGCTCAGAAGTCTTA
* *
8393834 AAAATCATGCTCGAAGGTCTTACAGAATC
1 GAAATCATGC-CGAAGGTCTTATAGAATC
8393863 ATGCTTGGAG
Statistics
Matches: 123, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
109 1 0.01
110 121 0.98
111 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (109 bp):
GAAATCATGCCGAAGGTCTTATAGAATCGACTGAGATAACACCACAAGTCAAAAAATAAAGAATC
AATCGGGATAACACCACAAATCAAAATTATGCTCAGAAGTCTTA
Found at i:8393866 original size:23 final size:23
Alignment explanation
Indices: 8393818--8393884 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
8393808 AATCAAAATT
*
8393818 ATGCTCGGAGGTCTTA-AAAATC
1 ATGCTCGGAGGTCTTACAGAATC
*
8393840 ATGCTCGAAGGTCTTACAGAATC
1 ATGCTCGGAGGTCTTACAGAATC
*
8393863 ATGCTTGGAGGTCTTACAGAAT
1 ATGCTCGGAGGTCTTACAGAAT
8393885 TGATTGGAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
22 15 0.38
23 25 0.62
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (23 bp):
ATGCTCGGAGGTCTTACAGAATC
Found at i:8393943 original size:132 final size:133
Alignment explanation
Indices: 8393738--8393994 Score: 383
Period size: 132 Copynumber: 1.9 Consensus size: 133
8393728 TCATGTCCGA
* *
8393738 AGGTCTTATAGAATCGACTGGGATAACACCACAAGTCAAAAAATAAAGAATCAATCGGGATAACA
1 AGGTCTTACAGAATCGACTGGAATAACACCACAAGTCAAAAAATAAAGAATCAATCGGGATAACA
* * *
8393803 TCACAAATCAAAATTAT-GCTCGGAGGTCTTAAAAATCATGCTCGAAGGTCTTACAGAATCATGC
66 CCACAAATCAAAATTATACCT-GGAGGTCTTAAAAATCATGCTCGAAGGTCTTACAAAATCATGC
8393867 TTGG
130 TTGG
* * *
8393871 AGGTCTTACAGAATTGATTGGAATAACACCACAAGTC-AAAAATAAAGAATCGATCGGGATAACA
1 AGGTCTTACAGAATCGACTGGAATAACACCACAAGTCAAAAAATAAAGAATCAATCGGGATAACA
** * *
8393935 CCGTAAATCAAAATTATACCTGGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAAAATC
66 CCACAAATCAAAATTATACCTGGAGGTCTTAAAAATCATGCTCGAAGGTCTTACAAAATC
8393995 GACTGGGATA
Statistics
Matches: 111, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
132 76 0.68
133 35 0.32
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.23
Consensus pattern (133 bp):
AGGTCTTACAGAATCGACTGGAATAACACCACAAGTCAAAAAATAAAGAATCAATCGGGATAACA
CCACAAATCAAAATTATACCTGGAGGTCTTAAAAATCATGCTCGAAGGTCTTACAAAATCATGCT
TGG
Found at i:8394048 original size:110 final size:109
Alignment explanation
Indices: 8393834--8394104 Score: 364
Period size: 110 Copynumber: 2.5 Consensus size: 109
8393824 GGAGGTCTTA
* * * * * * * *
8393834 AAAATCATGCTCGAAGGTCTTACAGAATCATGCTTGGAGGTCTTACAGAATTGATTGGAATAACA
1 AAAATTATCCTCGGAGGTCTTAGA-AATCATGCTCGGAGGTCTTACAAAATCGACTGGAATAACA
8393899 CCACAAGTCAAAAATAAAGAATCGATCGGGATAACACCGTAAATC
65 CCACAAGTCAAAAATAAAGAATCGATCGGGATAACACCGTAAATC
*
8393944 AAAATTATACCT-GGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAAAATCGACTGGGATAACA
1 AAAATTAT-CCTCGGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAAAATCGACTGGAATAACA
* * *
8394008 TCACAAGTCAAAAGATAAAGAATCGATTGGGATAACACCGTGAATC
65 CCACAAGTCAAAA-ATAAAGAATCGATCGGGATAACACCGTAAATC
* * **
8394054 AAAATTATGCTCGGAAGTCTTAGAAATCATGCTCAAAGGTCTTACAAAATC
1 AAAATTATCCTCGGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAAAATC
8394105 ATGCTCGGAG
Statistics
Matches: 142, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
109 49 0.35
110 91 0.64
111 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (109 bp):
AAAATTATCCTCGGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAAAATCGACTGGAATAACAC
CACAAGTCAAAAATAAAGAATCGATCGGGATAACACCGTAAATC
Found at i:8394085 original size:22 final size:23
Alignment explanation
Indices: 8394053--8394128 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
8394043 CACCGTGAAT
*
8394053 CAAAATTATGCTCGGAAGTCTTA
1 CAAAATCATGCTCGGAAGTCTTA
* *
8394076 -GAAATCATGCTC-AAAGGTCTTA
1 CAAAATCATGCTCGGAA-GTCTTA
*
8394098 CAAAATCATGCTCGGAGGTCTTA
1 CAAAATCATGCTCGGAAGTCTTA
*
8394121 CAGAATCA
1 CAAAATCA
8394129 ACTGGGATAA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
21 2 0.05
22 16 0.37
23 24 0.56
24 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (23 bp):
CAAAATCATGCTCGGAAGTCTTA
Found at i:8394207 original size:133 final size:133
Alignment explanation
Indices: 8393958--8394238 Score: 386
Period size: 133 Copynumber: 2.1 Consensus size: 133
8393948 TTATACCTGG
* *
8393958 AGGTCTTA-GAAATCATGCTCGGAGGTCTTACAAAATCGACTGGGATAACATCACAAGTCAAAAG
1 AGGTCTTACAAAATCATGCTCGGAGGTCTTACAAAATCAACTGGGATAACATCACAAGTCAAAAG
* * * * * * **
8394022 ATAAAGAATCGATTGGGATAACACCGTGAATCAAAATTATGCTCGGAAGTCTTAGAAATCATGCT
66 ATAAAAAATCGATCGGGATAACACCGCGAAACAAAATAATACTCCAAAGTCTTAGAAATCATGCT
8394087 CAA
131 CAA
* *
8394090 AGGTCTTACAAAATCATGCTCGGAGGTCTTACAGAATCAACTGGGATAACATCAGAAGTCAAAAG
1 AGGTCTTACAAAATCATGCTCGGAGGTCTTACAAAATCAACTGGGATAACATCACAAGTCAAAAG
* *
8394155 ATAAAAAATCGATCGGGATAACACCGCGAAACGAAATAATAC-CCAAAGGTCTTAGAAATCATGT
66 ATAAAAAATCGATCGGGATAACACCGCGAAACAAAATAATACTCCAAA-GTCTTAGAAATCATGC
**
8394219 TCGG
130 TCAA
*
8394223 AGGTCTTACAGAATCA
1 AGGTCTTACAAAATCA
8394239 ACTAGGATAA
Statistics
Matches: 130, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
132 11 0.08
133 119 0.92
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (133 bp):
AGGTCTTACAAAATCATGCTCGGAGGTCTTACAAAATCAACTGGGATAACATCACAAGTCAAAAG
ATAAAAAATCGATCGGGATAACACCGCGAAACAAAATAATACTCCAAAGTCTTAGAAATCATGCT
CAA
Found at i:8394280 original size:110 final size:110
Alignment explanation
Indices: 8394087--8394348 Score: 344
Period size: 110 Copynumber: 2.4 Consensus size: 110
8394077 AAATCATGCT
* * * * *
8394087 CAAAGGTCTTACAAAATCATGCTCGGAGGTCTTACAGAATCAACTGGGATAACATCAGAAGTCAA
1 CAAAGGTCTTA-GAAATCATGTTCGGAGGTCTTACAGAATCAACTAGGATAACACCACAAGTCAA
* * *
8394152 AAGATAAAAAATCGATCGGGATAACACCGCGAAACGAAATAATACC
65 AACATAAAAAATCAATCGGGATAACACCGCGAAACAAAATAATACC
*
8394198 CAAAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCAACTAGGATAACACCACAAGTTAAA
1 CAAAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCAACTAGGATAACACCACAAGTCAAA
* * * * * **
8394263 ACATAAAGAATCAATCGGGATAACATCGTGAATCAAAATTATGTC
66 ACATAAAAAATCAATCGGGATAACACCGCGAAACAAAATAATACC
** *
8394308 CGGAGGTTTTAGAAATCATGTTCGGAGGTCTTACAGAATCA
1 CAAAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCA
8394349 TGTTCGGAGG
Statistics
Matches: 132, Mismatches: 19, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
110 121 0.92
111 11 0.08
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.22
Consensus pattern (110 bp):
CAAAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCAACTAGGATAACACCACAAGTCAAA
ACATAAAAAATCAATCGGGATAACACCGCGAAACAAAATAATACC
Found at i:8394350 original size:23 final size:23
Alignment explanation
Indices: 8394303--8394370 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
8394293 AATCAAAATT
* * *
8394303 ATGTCCGGAGGTTTTAGA-AATC
1 ATGTTCGGAGGTCTTACAGAATC
8394325 ATGTTCGGAGGTCTTACAGAATC
1 ATGTTCGGAGGTCTTACAGAATC
8394348 ATGTTCGGAGGTCTTACAGAATC
1 ATGTTCGGAGGTCTTACAGAATC
8394371 GACTAGGATA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 15 0.36
23 27 0.64
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (23 bp):
ATGTTCGGAGGTCTTACAGAATC
Found at i:8394450 original size:243 final size:242
Alignment explanation
Indices: 8393625--8394451 Score: 1113
Period size: 243 Copynumber: 3.4 Consensus size: 242
8393615 AAATTATGCC
* * *
8393625 CGGAGGTCTTATAGAATCGACTGAGATAACACCATAAGTCAAAAGATAAAGAATCGATCGGGATA
1 CGGAGGTCTTACAGAATCGACTG-GATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGATA
* * * * *
8393690 ACACCGCGAATCAAAATTATGCCTAGAAGTCTTAGAAATCATGTCCGAAGGTCTTATAGAATCGA
65 ACACCGCGAATCAAAATTATACCTAGAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCGA
***
8393755 CTGGGATAACACCACAAGTCAAAAAATAAAGAATCAATCGGGATAACATCACAAATCAAAATTAT
130 CTGGGATAACACCACAAGTCAAAAAATAAAGAATCAATCGGGATAACATCGTGAATCAAAATTAT
*
8393820 GCTCGGAGGTCTTAAAAATCATGCTCGAAGGTCTTACAGAATCATGCTT
195 GCTCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAATCATG-TT
* * *
8393869 -GGAGGTCTTACAGAATTGATTGGAATAACACCACAAGTCAAAA-ATAAAGAATCGATCGGGATA
1 CGGAGGTCTTACAGAATCGACTGG-ATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGATA
** * * *
8393932 ACACCGTAAATCAAAATTATACCTGGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAAAATCGA
65 ACACCGCGAATCAAAATTATACCTAGAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCGA
* * * * *
8393997 CTGGGATAACATCACAAGTCAAAAGATAAAGAATCGATTGGGATAACACCGTGAATCAAAATTAT
130 CTGGGATAACACCACAAGTCAAAAAATAAAGAATCAATCGGGATAACATCGTGAATCAAAATTAT
* * * *
8394062 GCTCGGAAGTCTTAGAAATCATGCTCAAAGGTCTTACAAAATCATGCT
195 GCTCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAATCATGTT
* * *
8394110 CGGAGGTCTTACAGAATCAACTGGGATAACATCAGAAGTCAAAAGATAAAAAATCGATCGGGATA
1 CGGAGGTCTTACAGAATCGACT-GGATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGATA
* * * * * *
8394175 ACACCGCGAAACGAAATAATACCCAAAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCAA
65 ACACCGCGAATCAAAATTATACCTAGAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCGA
* * *
8394240 CTAGGATAACACCACAAGTTAAAACATAAAGAATCAATCGGGATAACATCGTGAATCAAAATTAT
130 CTGGGATAACACCACAAGTCAAAAAATAAAGAATCAATCGGGATAACATCGTGAATCAAAATTAT
* * *
8394305 G-TCCGGAGGTTTTAGAAATCATGTTCGGAGGTCTTACAGAATCATGTT
195 GCT-CGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAATCATGTT
* *
8394353 CGGAGGTCTTACAGAATCGACTAGGATAACACCACAAGTCGAAAGATAAAAAATAGATCGGGATA
1 CGGAGGTCTTACAGAATCGACT-GGATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGATA
* * * *
8394418 ACATCGTGAATCAAATTTAT-GCTCAGAGGTCTTA
65 ACACCGCGAATCAAAATTATACCT-AGAGGTCTTA
8394452 AAAGTTGTGC
Statistics
Matches: 504, Mismatches: 73, Indels: 13
0.85 0.12 0.02
Matches are distributed among these distances:
241 1 0.00
242 212 0.42
243 291 0.58
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.23
Consensus pattern (242 bp):
CGGAGGTCTTACAGAATCGACTGGATAACACCACAAGTCAAAAGATAAAAAATCGATCGGGATAA
CACCGCGAATCAAAATTATACCTAGAGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCGAC
TGGGATAACACCACAAGTCAAAAAATAAAGAATCAATCGGGATAACATCGTGAATCAAAATTATG
CTCGGAGGTCTTAGAAATCATGCTCGAAGGTCTTACAGAATCATGTT
Found at i:8394467 original size:133 final size:132
Alignment explanation
Indices: 8394201--8394479 Score: 375
Period size: 133 Copynumber: 2.1 Consensus size: 132
8394191 TAATACCCAA
* *
8394201 AGGTCTTAGAAATCATGTTCGGAGGTCTTACAGAATCAACTAGGATAACACCACAAGTTAAAACA
1 AGGTCTTACAAATCATGTTCGGAGGTCTTACAGAATCAACTAGGATAACACCACAAGTCAAAACA
* * * **
8394266 TAAAGAATCAATCGGGATAACATCGTGAATCAAAATTATGTCCGGAGGTTTTAGAAATCATGTTC
66 TAAAAAATCAATCGGGATAACATCGTGAATCAAAATTATGTCCAGAGGTCTTAGAAATCATGCCC
8394331 GG
131 GG
* * *
8394333 AGGTCTTACAGAATCATGTTCGGAGGTCTTACAGAATCGACTAGGATAACACCACAAGTCGAAAG
1 AGGTCTTACA-AATCATGTTCGGAGGTCTTACAGAATCAACTAGGATAACACCACAAGTCAAAAC
* **
8394398 ATAAAAAAT-AGATCGGGATAACATCGTGAATCAAATTTATG-CTCAGAGGTCTTA-AAAGTTGT
65 ATAAAAAATCA-ATCGGGATAACATCGTGAATCAAAATTATGTC-CAGAGGTCTTAGAAA-TCAT
8394460 GCCCGG
127 GCCCGG
*
8394466 AGGTTTTACAAATC
1 AGGTCTTACAAATC
8394480 GTAAAATCTT
Statistics
Matches: 129, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
132 18 0.14
133 111 0.86
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.25
Consensus pattern (132 bp):
AGGTCTTACAAATCATGTTCGGAGGTCTTACAGAATCAACTAGGATAACACCACAAGTCAAAACA
TAAAAAATCAATCGGGATAACATCGTGAATCAAAATTATGTCCAGAGGTCTTAGAAATCATGCCC
GG
Found at i:8394662 original size:32 final size:32
Alignment explanation
Indices: 8394621--8394682 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
8394611 TTGAATGCTC
*
8394621 CTCATAATCAGAGGTAATGAAACTTTAAAAAT
1 CTCATAATCAGAGGCAATGAAACTTTAAAAAT
8394653 CTCATAATCAGAGGCAATGAAACTTTAAAA
1 CTCATAATCAGAGGCAATGAAACTTTAAAA
8394683 TTTAAAAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.47, C:0.15, G:0.13, T:0.26
Consensus pattern (32 bp):
CTCATAATCAGAGGCAATGAAACTTTAAAAAT
Found at i:8394778 original size:153 final size:154
Alignment explanation
Indices: 8394499--8394805 Score: 526
Period size: 153 Copynumber: 2.0 Consensus size: 154
8394489 TTGAATGCTC
* *
8394499 CTCATAATCAGAGGCAATGAAACTTTAAAAATTTTAAAATCTTTTAATCTTGAAAGTCGTGCACA
1 CTCATAATCAGAGGCAATGAAACTTTAAAAATTTAAAAATCTTTTAATCTTGAAAGTCGTACACA
* *
8394564 GAGACTTTTAGAAATTATGTCCGGAGGTCTTATAAATCTCAAAATCTTTGAATGCTCCTCATAAT
66 GAGACTTTTAGAAATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAAT
*
8394629 CAGAGGTAATGAAACTTTAAAAAT
131 CAGAGGCAATGAAACTTTAAAAAT
**
8394653 CTCATAATCAGAGGCAATGAAACTTT-AAAATTTAAAAATCTTTTAATCTTGAAAGTCGTACGTA
1 CTCATAATCAGAGGCAATGAAACTTTAAAAATTTAAAAATCTTTTAATCTTGAAAGTCGTACACA
* *
8394717 GAGGCTTTTAGAGATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAAT
66 GAGACTTTTAGAAATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAAT
8394782 CAGAGGCAATGAAACTTTAAAAAT
131 CAGAGGCAATGAAACTTTAAAAAT
8394806 TTAAAAATCT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
153 118 0.82
154 26 0.18
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.32
Consensus pattern (154 bp):
CTCATAATCAGAGGCAATGAAACTTTAAAAATTTAAAAATCTTTTAATCTTGAAAGTCGTACACA
GAGACTTTTAGAAATTATGCCCGGAGGTCTTACAAATCTCAAAATCTTTGAATGCTCCTCATAAT
CAGAGGCAATGAAACTTTAAAAAT
Found at i:8402321 original size:17 final size:19
Alignment explanation
Indices: 8402281--8402322 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8402271 GTTCGAGAGT
**
8402281 CGATTACGTTGTGGGGGTG
1 CGATTACGTTGTGGGGAAG
8402300 CGATTACG-TGTGGGGAAG
1 CGATTACGTTGTGGGGAAG
8402318 -GATTA
1 CGATTA
8402323 GCACCCCCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 5 0.24
18 8 0.38
19 8 0.38
ACGTcount: A:0.19, C:0.10, G:0.43, T:0.29
Consensus pattern (19 bp):
CGATTACGTTGTGGGGAAG
Found at i:8403213 original size:16 final size:16
Alignment explanation
Indices: 8403192--8403222 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8403182 TTAGGGTTTT
8403192 GATTTTAGAGTTTGGA
1 GATTTTAGAGTTTGGA
*
8403208 GATTTTAGGGTTTGG
1 GATTTTAGAGTTTGG
8403223 GTTTTGAGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.45
Consensus pattern (16 bp):
GATTTTAGAGTTTGGA
Found at i:8403273 original size:51 final size:51
Alignment explanation
Indices: 8403178--8403287 Score: 125
Period size: 51 Copynumber: 2.2 Consensus size: 51
8403168 AGGATATGGA
* * * *
8403178 AGGTTTAGGGTTTTGATTTTAGAGTTTGGAGATTTTAGGGTTTGGGTTTTG
1 AGGTTTGGGGTTTTAATTTAAGAGTTTGGAGATTTTAGGGTTTGGATTTTG
* *
8403229 AGGTTTGGGGTTTTAATTTAAGGGTTT-G-GATTTTAGGTATTTTGGATTTTG
1 AGGTTTGGGGTTTTAATTTAAGAGTTTGGAGATTTTAGG--GTTTGGATTTTG
*
8403280 GGGTTTGG
1 AGGTTTGG
8403288 ATTTAAGAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
49 9 0.18
50 1 0.02
51 40 0.80
ACGTcount: A:0.15, C:0.00, G:0.35, T:0.49
Consensus pattern (51 bp):
AGGTTTGGGGTTTTAATTTAAGAGTTTGGAGATTTTAGGGTTTGGATTTTG
Found at i:8404875 original size:3 final size:3
Alignment explanation
Indices: 8404862--8404897 Score: 63
Period size: 3 Copynumber: 11.7 Consensus size: 3
8404852 TATTTTTTAT
8404862 ATA ATTA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
8404898 TATTATTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 29 0.91
4 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:8404902 original size:3 final size:3
Alignment explanation
Indices: 8404896--8404930 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
8404886 AATAATAATA
8404896 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8404931 ACTAAAATGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:8409613 original size:16 final size:16
Alignment explanation
Indices: 8409594--8409631 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
8409584 AAATTAAATA
*
8409594 TATTAAAATTTTAATT
1 TATTAAAATATTAATT
8409610 TATT-AAATATTAATT
1 TATTAAAATATTAATT
8409625 T-TTAAAA
1 TATTAAAA
8409632 ATAATTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 2 0.10
15 14 0.70
16 4 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTAAAATATTAATT
Found at i:8413631 original size:10 final size:9
Alignment explanation
Indices: 8413599--8413631 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
8413589 CCTTTGCTTC
8413599 TTTTCTTTT
1 TTTTCTTTT
8413608 TTTT-TTTT
1 TTTTCTTTT
8413616 TTTTCTTTT
1 TTTTCTTTT
8413625 TTATTCT
1 TT-TTCT
8413632 ATAAGGGTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.36
9 10 0.45
10 4 0.18
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:8418614 original size:31 final size:31
Alignment explanation
Indices: 8418576--8418637 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
8418566 ATCTCAATTT
* *
8418576 TAGATTATTCAATAAAATTTTGCTACCTTAA
1 TAGATTATCCAATAAAATTTTGCTACATTAA
*
8418607 TAGATTATCCAATGAAATTTTGCTACATTAA
1 TAGATTATCCAATAAAATTTTGCTACATTAA
8418638 AAAATATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (31 bp):
TAGATTATCCAATAAAATTTTGCTACATTAA
Found at i:8419604 original size:38 final size:38
Alignment explanation
Indices: 8419520--8419604 Score: 91
Period size: 38 Copynumber: 2.2 Consensus size: 38
8419510 AAGTTTAATA
** * * *
8419520 AATATATATATAATTTTTATTTTATATATATATAAATT
1 AATATATATATAATTTACATTATATAAATAAATAAATT
*
8419558 AATTTATATATAATTTACATATATATAAATAAAT-AATT
1 AATATATATATAATTTACAT-TATATAAATAAATAAATT
*
8419596 TATATATAT
1 AATATATAT
8419605 TTGAATTTGG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
38 28 0.74
39 10 0.26
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (38 bp):
AATATATATATAATTTACATTATATAAATAAATAAATT
Found at i:8420096 original size:2 final size:2
Alignment explanation
Indices: 8420089--8420116 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8420079 TCATCACTTG
8420089 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8420117 CTAAGAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8423539 original size:25 final size:25
Alignment explanation
Indices: 8423493--8423550 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
8423483 AGAAATTATG
* *
8423493 AAATAAATTTTTTTAATTTAATGTAA
1 AAATAAATTTTATTAATATAAT-TAA
*
8423519 AAATGAATTTTATT-ATATAATTAA
1 AAATAAATTTTATTAATATAATTAA
8423543 ATAATAAA
1 A-AATAAA
8423551 ATAACAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 4 0.15
25 11 0.41
26 12 0.44
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (25 bp):
AAATAAATTTTATTAATATAATTAA
Found at i:8423594 original size:24 final size:24
Alignment explanation
Indices: 8423560--8423624 Score: 71
Period size: 24 Copynumber: 2.8 Consensus size: 24
8423550 AATAACAAAA
8423560 ATTATTATTTTA-AGAATTAAAATT
1 ATTATTATTTTATA-AATTAAAATT
* *
8423584 ATTATTTTTTTATAATTTAAAATT
1 ATTATTATTTTATAAATTAAAATT
* *
8423608 TTTATTA-TATATAAATT
1 ATTATTATTTTATAAATT
8423625 TTAATATAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
23 8 0.24
24 25 0.74
25 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
ATTATTATTTTATAAATTAAAATT
Found at i:8423611 original size:16 final size:17
Alignment explanation
Indices: 8423590--8423636 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
8423580 AATTATTATT
*
8423590 TTTTTATAATTTA-AAA
1 TTTTTATAATATATAAA
*
8423606 TTTTTATTATATATAAA
1 TTTTTATAATATATAAA
8423623 TTTTAATATAATAT
1 TTTT--TATAATAT
8423637 CTTTAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 11 0.44
17 7 0.28
19 7 0.28
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTTTATAATATATAAA
Found at i:8425011 original size:2 final size:2
Alignment explanation
Indices: 8425006--8425044 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
8424996 ATATATATAT
*
8425006 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
8425045 GTATTTTGGT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.46, G:0.03, T:0.00
Consensus pattern (2 bp):
AC
Found at i:8426461 original size:25 final size:25
Alignment explanation
Indices: 8426433--8426481 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
8426423 GCCGTATTAC
*
8426433 GAGGATAAGAGTTGGAGTTACAGAT
1 GAGGATAAGAGTAGGAGTTACAGAT
8426458 GAGGATAAGAGTAGGAGTTACAGA
1 GAGGATAAGAGTAGGAGTTACAGA
8426482 ATTTGAACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.37, T:0.20
Consensus pattern (25 bp):
GAGGATAAGAGTAGGAGTTACAGAT
Found at i:8436007 original size:24 final size:23
Alignment explanation
Indices: 8435948--8436020 Score: 71
Period size: 24 Copynumber: 3.1 Consensus size: 23
8435938 ATTAATTTTT
*
8435948 ATATATTTAAATTTTTATAAAACAA
1 ATATA-TTAAAATTTTATAAAA-AA
8435973 A-A-A-TAATAATTTTATACAAAAA
1 ATATATTAA-AATTTTATA-AAAAA
8435995 ATATATTAAAATTTTATATAAAAA
1 ATATATTAAAATTTTATA-AAAAA
8436019 AT
1 AT
8436021 TAAAAAAATT
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
21 3 0.07
22 11 0.27
23 5 0.12
24 18 0.44
25 4 0.10
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.40
Consensus pattern (23 bp):
ATATATTAAAATTTTATAAAAAA
Found at i:8436114 original size:27 final size:24
Alignment explanation
Indices: 8436058--8436114 Score: 60
Period size: 27 Copynumber: 2.2 Consensus size: 24
8436048 AAAACAAATC
*
8436058 AAATTAAATTAATAAAATTCAATT
1 AAATTAAATCAATAAAATTCAATT
*
8436082 AGAATTAAATCACATAAAAATTCATTTT
1 A-AATTAAATCA-AT-AAAATTCA-ATT
8436110 AAATT
1 AAATT
8436115 TATATCAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 1 0.04
25 9 0.33
26 2 0.07
27 12 0.44
28 3 0.11
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (24 bp):
AAATTAAATCAATAAAATTCAATT
Found at i:8436323 original size:3 final size:3
Alignment explanation
Indices: 8436315--8436358 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
8436305 CTTTATCTAT
8436315 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8436359 CCTCTTCTCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8436502 original size:13 final size:13
Alignment explanation
Indices: 8436484--8436534 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
8436474 TTTGATGTAG
8436484 ATTAAATTTATAT
1 ATTAAATTTATAT
* *
8436497 ATTAAATATATAA
1 ATTAAATTTATAT
*
8436510 ATTAAATTCAGGTAT
1 ATTAAATTTA--TAT
8436525 ATTAAATTTA
1 ATTAAATTTA
8436535 AGATAAAAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
13 19 0.63
15 11 0.37
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (13 bp):
ATTAAATTTATAT
Found at i:8436607 original size:18 final size:16
Alignment explanation
Indices: 8436584--8436621 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 16
8436574 AATCAAATTA
8436584 TATATTTTTATTAATTTT
1 TATATTTTTA-T-ATTTT
8436602 TATATTTTTATATTTT
1 TATATTTTTATATTTT
8436618 TATA
1 TATA
8436622 AAATAAAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 9 0.45
17 1 0.05
18 10 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATATTTTTATATTTT
Found at i:8436617 original size:7 final size:8
Alignment explanation
Indices: 8436584--8436621 Score: 58
Period size: 8 Copynumber: 4.5 Consensus size: 8
8436574 AATCAAATTA
8436584 TATATTTT
1 TATATTTT
8436592 TATTAATTTT
1 TA-T-ATTTT
8436602 TATATTTT
1 TATATTTT
8436610 TATATTTT
1 TATATTTT
8436618 TATA
1 TATA
8436622 AAATAAAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 19 0.68
9 2 0.07
10 7 0.25
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (8 bp):
TATATTTT
Found at i:8436663 original size:22 final size:24
Alignment explanation
Indices: 8436638--8436683 Score: 78
Period size: 22 Copynumber: 2.0 Consensus size: 24
8436628 AAACAACAAT
8436638 TTTATATTAAAAT-ATAT-TAAAA
1 TTTATATTAAAATAATATATAAAA
8436660 TTTATATTAAAATAATATATAAAA
1 TTTATATTAAAATAATATATAAAA
8436684 ATAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 13 0.59
23 4 0.18
24 5 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TTTATATTAAAATAATATATAAAA
Found at i:8436667 original size:12 final size:12
Alignment explanation
Indices: 8436638--8436672 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
8436628 AAACAACAAT
8436638 TTTATATTAAAA
1 TTTATATTAAAA
8436650 --TATATTAAAA
1 TTTATATTAAAA
8436660 TTTATATTAAAA
1 TTTATATTAAAA
8436672 T
1 T
8436673 AATATATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 10 0.48
12 11 0.52
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
TTTATATTAAAA
Found at i:8436682 original size:12 final size:12
Alignment explanation
Indices: 8436640--8436686 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
8436630 ACAACAATTT
8436640 TATATT-AAA-A
1 TATATTAAAATA
*
8436650 TATATTAAAATT
1 TATATTAAAATA
8436662 TATATTAAAATAA
1 TATATTAAAAT-A
*
8436675 TATATAAAAATA
1 TATATTAAAATA
8436687 AAAAAAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
10 6 0.19
11 3 0.10
12 12 0.39
13 10 0.32
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
TATATTAAAATA
Found at i:8436684 original size:13 final size:13
Alignment explanation
Indices: 8436648--8436687 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
8436638 TTTATATTAA
8436648 AATATATTAAAAT
1 AATATATTAAAAT
*
8436661 -TTATATTAAAAT
1 AATATATTAAAAT
*
8436673 AATATATAAAAAT
1 AATATATTAAAAT
8436686 AA
1 AA
8436688 AAAAAATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AATATATTAAAAT
Found at i:8437157 original size:7 final size:7
Alignment explanation
Indices: 8437138--8437183 Score: 53
Period size: 6 Copynumber: 6.9 Consensus size: 7
8437128 TTTGATGTAA
8437138 ATTAAAT
1 ATTAAAT
8437145 -TTAAAT
1 ATTAAAT
8437151 ATTAAAT
1 ATTAAAT
*
8437158 A-TAAAA
1 ATTAAAT
8437164 ATT-AAT
1 ATTAAAT
8437170 ATTAAAT
1 ATTAAAT
8437177 ATATAAA
1 AT-TAAA
8437184 ATTTAAGATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
6 16 0.48
7 13 0.39
8 4 0.12
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
ATTAAAT
Found at i:8437189 original size:21 final size:20
Alignment explanation
Indices: 8437141--8437189 Score: 73
Period size: 19 Copynumber: 2.4 Consensus size: 20
8437131 GATGTAAATT
8437141 AAATTTAAATATTAAATATAA
1 AAATTT-AATATTAAATATAA
8437162 AAA-TTAATATTAAATATATA
1 AAATTTAATATTAAATATA-A
8437182 AAATTTAA
1 AAATTTAA
8437190 GATAAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
19 13 0.50
20 6 0.23
21 7 0.27
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAATTTAATATTAAATATAA
Found at i:8437198 original size:654 final size:656
Alignment explanation
Indices: 8435812--8438393 Score: 2599
Period size: 663 Copynumber: 4.0 Consensus size: 656
8435802 CTTCTATTTT
* * * * **
8435812 AATTTTTTATTTGATTTAAATTAAATTTAAATATTAGATATATAATTTAAATTCGGATATATTTG
1 AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATATAAATTAAATTCAGATATATTAA
* * * *
8435877 ATTTAGGAT-AAAATAAAAAAATT--AAAAAAATCAAACTAAATCAAATCAAACTACATA-TTTT
66 ATTTAAGATAAAAAT-TAAAAATTAAAAAAAAATCAAACTGAATCAAATCAAACTATATATTTTT
* * **
8435938 ATTAATTTTTATATATTTAAATTTTTATAAAACAAAAATAATAATTTTATACAAAAAATATATTA
130 ATTAATTTTTATATATTTAAATTTTTATAAAATAAAAATAACAATTTTATA-TTAAAATATATTA
* * *
8436003 AAA--T-T-TT---ATATA-A-AAAATTAAAAAAATTAAATTTTAAAATTTGATAAAAC-AAATC
194 AAATTTATATTAAAATATATATAAAAATAAAAAAAATAAA-TTTAAAA-TTAAT-AAACTAAATC
* * * *
8436058 AAATTAAATTAATAAAATTCAATTAGAATTAAATCACATAAAAATTCATTTTAAATTTATATCAA
256 AAATTAAATTAATAAAATTTAATTTGAATTAAATCACAT-AAAATTCAATTCAAATTTATATCAA
* * * * *
8436123 ATTTTAAAATTTTATAATATTATATAATATAAAAATATTAAATCAAATTCAATTGGAATTATTAT
320 ATTTTAAAAATTTATAATATTATATAATATAAAAACACTAAATC-AATTCAATTGAAATCATTAT
* * * * * *
8436188 CAT-TTTCGAATAAAAGTGTAATTATTAT-AAAAAGATTTGTTAACCACTATTTTAAAATCTAAA
384 CATCATTCGAATAAAAGTGCAATTATTATGAAAAA-ATATGTCAACCGCTACTTTAAAATCTAAA
* * ** * * *
8436251 CAATTAATGGAGTGGTACAGGACGATTTGTGGCTTATTTTCA-CTGCAACAATTGCTTTATCTAT
448 CAATTAATGTAGTGGTGCAGGACGATTTACGGCTTAGTTTCATC-GCAACAATTACTTTATTTAT
* *
8436315 TTATTATTATTATTATTATTATTATTATTATTATTATTATTATTCCTCTTCTCTTACTTGAACTA
512 TTATTATTATTA-TATTATTA--A-TATTA-TA-TA--ATTATT-CTCTTCTCTTATTTGAGCTA
* * * *
8436380 CTAATTTTAATACTTCATACTTATTTTTTTA---T-TTTGATTTTTATTTAAAAATTATATAGCA
568 CTAATTTTAGTACTTCACACCTATTTTTTTATTTTATTTTATTTTTATTTAAAAATTATATAGCA
* *
8436441 ATTTTATTAGCCTAACATAAAATA
633 ATTTTATTAGCTTAACGTAAAATA
* * * *
8436465 ATTTTTTTATTTGATGTAGATTAAATTTATATATTAAATATATAAATTAAATTCAGGTATATTAA
1 AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATATAAATTAAATTCAGATATATTAA
* *
8436530 ATTTAAGATAAAAATTAAAAATT-AAAAAAAATCAAATTGAATCAAATCAAATTATATATTTTTA
66 ATTTAAGATAAAAATTAAAAATTAAAAAAAAATCAAACTGAATCAAATCAAACTATATATTTTTA
* * *
8436594 TTAATTTTTATATTTTTATATTTTTATAAAATAAAAACAACAATTTTATATTAAAATATATTAAA
131 TTAATTTTTATATATTTAAATTTTTATAAAATAAAAATAACAATTTTATATTAAAATATATTAAA
8436659 ATTTATATTAAAATAATATATAAAAATAAAAAAAATAAATTTCAAAATTAATAAACTAAATCAAA
196 ATTTATATTAAAAT-ATATATAAAAATAAAAAAAATAAATTT-AAAATTAATAAACTAAATCAAA
* * *
8436724 TTAAATTAATAAAATTTAATTTGAATCAAACCACATAAAAATTTAATTCAAATTTATATCAAATT
259 TTAAATTAATAAAATTTAATTTGAATTAAATCACAT-AAAATTCAATTCAAATTTATATCAAATT
**
8436789 TTAAATTTTTATAATATTATATAATATAAAAACACTAAATCAGATTCAATTGAAATCATTATCAT
323 TTAAAAATTTATAATATTATATAATATAAAAACACTAAATCA-ATTCAATTGAAATCATTATCAT
* * * *
8436854 CATT-GAATAGAAGTACAATTATTAT-AAAAAATATGTCAACTGCTACTTTAAAATCTAAATAAT
387 CATTCGAATAAAAGTGCAATTATTATGAAAAAATATGTCAACCGCTACTTTAAAATCTAAACAAT
* * *
8436917 TAATGCAATGGTGCAGGACGATTTACGGATT-GATTTCATCGCAACAATTACTTTATTTATTTA-
452 TAATGTAGTGGTGCAGGACGATTTACGGCTTAG-TTTCATCGCAACAATTACTTTATTTATTTAT
*
8436980 T-TTATTA-ATTATTAATATTA-ATAATT-TT-T-TCCTCTTATTTGAGCTACTAATTTTAGTAC
516 TATTATTATATTATTAATATTATATAATTATTCTCTTCTCTTATTTGAGCTACTAATTTTAGTAC
*
8437039 TTCACACCTATTTTTTATTATTTTATTTTATTTTTCTTTAAAAATTTTATATAGCAATTTTATTA
581 TTCACACCTA-TTTTT-TTATTTTATTTTATTTTTATTTAAAAA--TTATATAGCAATTTTATTA
8437104 GCTTAACGTAAAATA
642 GCTTAACGTAAAATA
* * *
8437119 AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATAAAAATTAATATT-AAATATATAA
1 AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATATAAATTAA-ATTCAGATATATTA
* *
8437183 AATTTAAGATAAAAATTAAAAAATTAAAAAAAAATCAAA-TCGAATCAAATTAAAATATATATTT
65 AATTTAAGATAAAAATT-AAAAATTAAAAAAAAATCAAACT-GAATCAAATCAAACTATATATTT
* * * *
8437247 TTATTAACTTTTATATATTTAAATTTTTATAAAATAAAAATAATAATTTTTTATTAGAATATATT
128 TTATTAATTTTTATATATTTAAATTTTTATAAAATAAAAATAACAATTTTATATTAAAATATATT
* * *
8437312 AAATTTTTATATTAAAATA-ATAT----AT-----AAA-AAA-TTAAATTTAATAAACAAAATCA
193 AAA-ATTTATATTAAAATATATATAAAAATAAAAAAAATAAATTTAAAATTAATAAACTAAATCA
* * * *
8437365 AATTAAATTAATAAAATTTAATTTAAATTAAATCATATAAAATTCGATTCAAATTTATATCAAAA
257 AATTAAATTAATAAAATTTAATTTGAATTAAATCACATAAAATTCAATTCAAATTTATATCAAAT
** * * *
8437430 TTTAAAAATTTATAATACCATATAATATTAAAATATTAAATTCAATTCAATTGAAA-C--TAT--
322 TTTAAAAATTTATAATATTATATAATATAAAAACACTAAA-TCAATTCAATTGAAATCATTATCA
* * *
8437490 T-A-TC-------AGTGCAATTATTATGAAAAGATATGTCAACCGTTATTTTAAAATCTAAACAA
386 TCATTCGAATAAAAGTGCAATTATTATGAAAAAATATGTCAACCGCTACTTTAAAATCTAAACAA
* * *
8437546 TTAATTTAGTGGTGCAGGATGATTTACGGCTTA-TTT-TTGCGCAACAATTACTTTATTTATTTA
451 TTAATGTAGTGGTGCAGGACGATTTACGGCTTAGTTTCAT-CGCAACAATTACTTTATTTATTTA
* * * *
8437609 -T-TTA-T-TATTA-T--TATTAT-T--TT-TTCCTCTTCTCTTCTTTAAGCTACTAATATCAGT
515 TTATTATTATATTATTAATATTATATAATTATT-CTCTTCTCTTATTTGAGCTACTAATTTTAGT
*
8437663 ACTTCACACCTA--TTTTT-TTTTATTTTGATTTTTATTTAAAAATTATATAGCAACTTTATTAG
579 ACTTCACACCTATTTTTTTATTTTATTTT-ATTTTTATTTAAAAATTATATAGCAATTTTATTAG
*
8437725 CTTAATGTAAAATAA
643 CTTAACGTAAAAT-A
* * * *
8437740 AATTTTTTATTTGATATAAATTAAATTTAGATATTAAATATATAAATTAAATTTAGATATATTGA
1 AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATATAAATTAAATTCAGATATATTAA
* *
8437805 ATTTAAGATAAAAAATGAAAATTTGAAAAAAAAATCAAACTGAAT-AAATTCAAACTATATATTT
66 ATTTAAGAT-AAAAATTAAAAATT-AAAAAAAAATCAAACTGAATCAAA-TCAAACTATATATTT
* * ** * ** *
8437869 GTATTAATTTTTATATTTTTATAA--AATA-AAAATAATAATTTTATATCAA-AATATATTAACA
128 TTATTAATTTTTATATATTTA-AATTTTTATAAAATAA-AA----ATAACAATTTTATATTAAAA
* * *
8437930 TTTATTAAAATTTTATATTAAAATAATATATAAAAAATTAAAAAAAATTTAATTTTAAAAATTGA
187 TATATTAAAA-TTTATATTAAAAT-ATATAT-AAAAA-TAAAAAAAA--TAAATTT-AAAATTAA
* * *
8437995 TAAATTAAAT-ATAATTAAACTAATAAAATTTAATTCG-----AAT--C----AA-T---TT-AA
245 TAAACTAAATCA-AATTAAATTAATAAAATTTAATTTGAATTAAATCACATAAAATTCAATTCAA
* *
8438043 ATTTATATCAAATTTTAAAAATTTATAATATTATACAATA-AAAAACACTAAATCAATTTTAATT
309 ATTTATATCAAATTTTAAAAATTTATAATATTATATAATATAAAAACACTAAATCAA-TTCAATT
* *** *
8438107 -AGAATCTTTATCATC-TTCGAATAAAAGTGCAATTATTATGAAGTGATATATCAACCGCTACTT
373 GA-AATCATTATCATCATTCGAATAAAAGTGCAATTATTATGAAAAAATATGTCAACCGCTACTT
* *
8438170 TAAAATCTAAACAATTAACT-TAGTGGTGCAGGACGATTT-CTGGTTTAGTTTCATCGTAACAAT
437 TAAAATCTAAACAATTAA-TGTAGTGGTGCAGGACGATTTAC-GGCTTAGTTTCATCGCAACAAT
* * * *
8438233 TGCTTTATTTA-TTATTATTATTATTATTATTATTATTATTATTATTATTCCTCTTCTCTTCTTT
500 TACTTTATTTATTTATTATTATTA-TATTATTAATATTA-TATAATTATT-CTCTTCTCTTATTT
* * *
8438297 GAGCTACTAATTTTAGTACTTCACACTTATTTTTTTA---T-TTTGATTTTTATTCAAAAATTAT
562 GAGCTACTAATTTTAGTACTTCACACCTATTTTTTTATTTTATTTTATTTTTATTTAAAAATTAT
* *
8438358 ATAGCAATTTCATTAGCTTAACGTAAAACA
627 ATAGCAATTTTATTAGCTTAACGTAAAATA
8438388 AATTTT
1 AATTTT
8438394 ATGATATAAT
Statistics
Matches: 1637, Mismatches: 181, Indels: 227
0.80 0.09 0.11
Matches are distributed among these distances:
620 41 0.03
621 87 0.05
622 71 0.04
623 10 0.01
624 33 0.02
625 30 0.02
626 78 0.05
627 3 0.00
628 9 0.01
629 44 0.03
630 61 0.04
631 5 0.00
632 1 0.00
635 1 0.00
636 1 0.00
637 8 0.00
638 77 0.05
639 26 0.02
640 6 0.00
641 5 0.00
642 105 0.06
643 60 0.04
644 3 0.00
645 3 0.00
646 42 0.03
647 7 0.00
648 11 0.01
649 45 0.03
650 8 0.00
651 46 0.03
652 19 0.01
653 76 0.05
654 151 0.09
655 70 0.04
656 98 0.06
657 14 0.01
658 9 0.01
660 6 0.00
661 3 0.00
662 86 0.05
663 156 0.10
664 22 0.01
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.43
Consensus pattern (656 bp):
AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATATAAATTAAATTCAGATATATTAA
ATTTAAGATAAAAATTAAAAATTAAAAAAAAATCAAACTGAATCAAATCAAACTATATATTTTTA
TTAATTTTTATATATTTAAATTTTTATAAAATAAAAATAACAATTTTATATTAAAATATATTAAA
ATTTATATTAAAATATATATAAAAATAAAAAAAATAAATTTAAAATTAATAAACTAAATCAAATT
AAATTAATAAAATTTAATTTGAATTAAATCACATAAAATTCAATTCAAATTTATATCAAATTTTA
AAAATTTATAATATTATATAATATAAAAACACTAAATCAATTCAATTGAAATCATTATCATCATT
CGAATAAAAGTGCAATTATTATGAAAAAATATGTCAACCGCTACTTTAAAATCTAAACAATTAAT
GTAGTGGTGCAGGACGATTTACGGCTTAGTTTCATCGCAACAATTACTTTATTTATTTATTATTA
TTATATTATTAATATTATATAATTATTCTCTTCTCTTATTTGAGCTACTAATTTTAGTACTTCAC
ACCTATTTTTTTATTTTATTTTATTTTTATTTAAAAATTATATAGCAATTTTATTAGCTTAACGT
AAAATA
Found at i:8437319 original size:23 final size:25
Alignment explanation
Indices: 8437261--8437339 Score: 71
Period size: 23 Copynumber: 3.4 Consensus size: 25
8437251 TAACTTTTAT
* * *
8437261 ATATTTAAATTTTTATA-AAATAAAA
1 ATATATAAATTTTTATATTAA-AATA
*
8437286 ATA-AT-AATTTTT-TATTAGAAT-
1 ATATATAAATTTTTATATTAAAATA
8437307 ATAT-TAAATTTTTATATTAAAATA
1 ATATATAAATTTTTATATTAAAATA
8437331 ATATATAAA
1 ATATATAAA
8437340 AAATTAAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
21 4 0.09
22 11 0.26
23 16 0.37
24 5 0.12
25 7 0.16
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (25 bp):
ATATATAAATTTTTATATTAAAATA
Found at i:8437361 original size:19 final size:19
Alignment explanation
Indices: 8437339--8437390 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
8437329 TAATATATAA
8437339 AAAATTAAATTTAATAAAC
1 AAAATTAAATTTAATAAAC
* * * *
8437358 AAAATCAAATTAAATTAAT
1 AAAATTAAATTTAATAAAC
*
8437377 AAAATTTAATTTAA
1 AAAATTAAATTTAA
8437391 ATTAAATCAT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAATTAAATTTAATAAAC
Found at i:8437393 original size:663 final size:657
Alignment explanation
Indices: 8435812--8438393 Score: 2510
Period size: 654 Copynumber: 4.0 Consensus size: 657
8435802 CTTCTATTTT
* * * * **
8435812 AATTTTTTATTTGATTTAAATTAAATTTAAATATTAGATATATAATTTAAATTCGGATATATTTG
1 AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATATAAATTAAATTCAGATATATTAA
* * * *
8435877 ATTTAGGAT-AAAATAAAAAAATT-AAAAAAATCAAACTAAATCAAATCAAACTACATA-TTTTA
66 ATTTAAGATAAAAATTAAAAAATTAAAAAAAATCAAACTGAATCAAATCAAACTATATATTTTTA
* **
8435939 TTAATTTTTATATATTTAAATTTTTATAAAACAAAAATAATAATTTTATACAAAAAATATATTAA
131 TTAATTTTTATATATTTAAATTTTTATAAAATAAAAATAATAATTTTATA-TTAAAATATATT-A
* *** *
8436004 AATTTTATA-TAAAA-AAT-TAAAAAAATTAAA-TT--T---TAAAATTTGA-TAA--AACAAAT
194 AATTTTATATTAAAATAATATATAAAAA-TAAATTTAATAAATAAAATCAAATTAATTAATAAAT
* * *
8436057 CAAATTAAATTAATAAAATTCAATTAGAATTAAATCACATAAAAATTCATTTTAAATTTATATCA
258 CAAATTAAATTAATAAAATT-AATT-TAA-TAAATCACATAAAAATTCAATTCAAATTTATATCA
* * * * *
8436122 AATTTTAAAATTTTATAATATTATATAATATAAAAATATTAAATCAAATTCAATTGGAATTATTA
320 AATTTTAAAAATTTATAATATTATATAATATAAAAACACTAAATC-AATTCAATTGAAATCATTA
* * * * * *
8436187 TCAT-TTTCGAATAAAAGTGTAATTATTAT-AAAAAGATTTGTTAACCACTATTTTAAAATCTAA
384 TCATCATTCGAATAAAAGTGCAATTATTATGAAAAA-ATATGTCAACCGCTACTTTAAAATCTAA
* * ** * * *
8436250 ACAATTAATGGAGTGGTACAGGACGATTTGTGGCTTATTTTCA-CTGCAACAATTGCTTTATCTA
448 ACAATTAATGTAGTGGTGCAGGACGATTTACGGCTTAGTTTCATC-GCAACAATTACTTTATTTA
* *
8436314 TTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTCCTCTTCTCTTACTTGAACT
512 TTTATTATTATTA-TATTATTA--A-TATTA-TA-TA--ATTATT-CTCTTCTCTTATTTGAGCT
* * * *
8436379 ACTAATTTTAATACTTCATACTTATTTTTTTA---T-TTTGATTTTTATTTAAAAATTATATAGC
568 ACTAATTTTAGTACTTCACACCTATTTTTTTATTTTATTTTATTTTTATTTAAAAATTATATAGC
* *
8436440 AATTTTATTAGCCTAACATAAAATA
633 AATTTTATTAGCTTAACGTAAAATA
* * * *
8436465 ATTTTTTTATTTGATGTAGATTAAATTTATATATTAAATATATAAATTAAATTCAGGTATATTAA
1 AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATATAAATTAAATTCAGATATATTAA
* *
8436530 ATTTAAGATAAAAATT-AAAAATTAAAAAAAATCAAATTGAATCAAATCAAATTATATATTTTTA
66 ATTTAAGATAAAAATTAAAAAATTAAAAAAAATCAAACTGAATCAAATCAAACTATATATTTTTA
* * * *
8436594 TTAATTTTTATATTTTTATATTTTTATAAAATAAAAACAACAATTTTATATTAAAATATATTAAA
131 TTAATTTTTATATATTTAAATTTTTATAAAATAAAAATAATAATTTTATATTAAAATATATTAAA
* * *
8436659 ATTTATATTAAAATAATATATAAAAATAAA---AA-AAATAAATTTCAAAATTAATAAACTAAAT
196 TTTTATATTAAAATAATATATAAAAATAAATTTAATAAATAAA-ATC-AAATTAATTAA-TAAAT
* *
8436720 CAAATTAAATTAATAAAATTTAATTTGAATCAAACCACATAAAAATTTAATTCAAATTTATATCA
258 CAAATTAAATTAATAAAA-TTAATTT-AAT-AAATCACATAAAAATTCAATTCAAATTTATATCA
**
8436785 AATTTTAAATTTTTATAATATTATATAATATAAAAACACTAAATCAGATTCAATTGAAATCATTA
320 AATTTTAAAAATTTATAATATTATATAATATAAAAACACTAAATCA-ATTCAATTGAAATCATTA
* * *
8436850 TCATCATT-GAATAGAAGTACAATTATTAT-AAAAAATATGTCAACTGCTACTTTAAAATCTAAA
384 TCATCATTCGAATAAAAGTGCAATTATTATGAAAAAATATGTCAACCGCTACTTTAAAATCTAAA
* * * *
8436913 TAATTAATGCAATGGTGCAGGACGATTTACGGATT-GATTTCATCGCAACAATTACTTTATTTAT
449 CAATTAATGTAGTGGTGCAGGACGATTTACGGCTTAG-TTTCATCGCAACAATTACTTTATTTAT
*
8436977 TTA-T-TTATTA-ATTATTAATATTA-ATAATT-TT-T-TCCTCTTATTTGAGCTACTAATTTTA
513 TTATTATTATTATATTATTAATATTATATAATTATTCTCTTCTCTTATTTGAGCTACTAATTTTA
*
8437035 GTACTTCACACCTATTTTTTATTATTTTATTTTATTTTTCTTTAAAAATTTTATATAGCAATTTT
578 GTACTTCACACCTA-TTTTT-TTATTTTATTTTATTTTTATTTAAAAA--TTATATAGCAATTTT
8437100 ATTAGCTTAACGTAAAATA
639 ATTAGCTTAACGTAAAATA
* * *
8437119 AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATAAAAATTAATATT-AAATATATAA
1 AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATATAAATTAA-ATTCAGATATATTA
* *
8437183 AATTTAAGATAAAAATTAAAAAATTAAAAAAAAATCAAA-TCGAATCAAATTAAAATATATATTT
65 AATTTAAGATAAAAATTAAAAAATT-AAAAAAAATCAAACT-GAATCAAATCAAACTATATATTT
* * *
8437247 TTATTAACTTTTATATATTTAAATTTTTATAAAATAAAAATAATAATTTTTTATTAGAATATATT
128 TTATTAATTTTTATATATTTAAATTTTTATAAAATAAAAATAATAATTTTATATTAAAATATATT
*
8437312 AAATTTTTATATTAAAATAATATATAAAAAATTAAATTTAATAAACAAAATCAAATTAAATTAAT
193 AAA-TTTTATATTAAAATAATATAT-AAAAA-TAAATTTAATAAATAAAATCAAATT-AATTAAT
* * *
8437377 --A--AAA-T---TTAAT----TTAA---ATTAAATCATAT-AAAATTCGATTCAAATTTATATC
254 AAATCAAATTAAATTAATAAAATTAATTTAATAAATCACATAAAAATTCAATTCAAATTTATATC
* ** * * *
8437426 AAAATTTAAAAATTTATAATACCATATAATATTAAAATATTAAATTCAATTCAATTGAAA-C--T
319 AAATTTTAAAAATTTATAATATTATATAATATAAAAACACTAAA-TCAATTCAATTGAAATCATT
* * *
8437488 AT--T-A-TC-------AGTGCAATTATTATGAAAAGATATGTCAACCGTTATTTTAAAATCTAA
383 ATCATCATTCGAATAAAAGTGCAATTATTATGAAAAAATATGTCAACCGCTACTTTAAAATCTAA
* * *
8437542 ACAATTAATTTAGTGGTGCAGGATGATTTACGGCTTA-TTT-TTGCGCAACAATTACTTTATTTA
448 ACAATTAATGTAGTGGTGCAGGACGATTTACGGCTTAGTTTCAT-CGCAACAATTACTTTATTTA
* * *
8437605 TTTA-T-TTA-T-TATTA-T--TATTAT-T--TT-TTCCTCTTCTCTTCTTTAAGCTACTAATAT
512 TTTATTATTATTATATTATTAATATTATATAATTATT-CTCTTCTCTTATTTGAGCTACTAATTT
* *
8437659 CAGTACTTCACACCTA--TTTTT-TTTTATTTTGATTTTTATTTAAAAATTATATAGCAACTTTA
576 TAGTACTTCACACCTATTTTTTTATTTTATTTT-ATTTTTATTTAAAAATTATATAGCAATTTTA
*
8437721 TTAGCTTAATGTAAAATAA
640 TTAGCTTAACGTAAAAT-A
* * * *
8437740 AATTTTTTATTTGATATAAATTAAATTTAGATATTAAATATATAAATTAAATTTAGATATATTGA
1 AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATATAAATTAAATTCAGATATATTAA
* * *
8437805 ATTTAAGATAAAAAATGAAAATTTGAAAAAAAAATCAAACTGAAT-AAATTCAAACTATATATTT
66 ATTTAAGATAAAAATTAAAAAATT--AAAAAAAATCAAACTGAATCAAA-TCAAACTATATATTT
* *
8437869 GTATTAA--TTT-T-TA--T--ATTTTTATAAAATAAAAATAATAATTTTATATCAAAATATATT
128 TTATTAATTTTTATATATTTAAATTTTTATAAAATAAAAATAATAATTTTATATTAAAATATATT
** * * * * *
8437926 AACA--TT-TATTAAAATTTTATATTAAAATAATATATAAAAAATTAAAA-AAAATTTAATT-TT
193 AA-ATTTTATATTAAAATAATATATAAAAATAA-ATTTAATAAA-TAAAATCAAA-TTAATTAAT
* * ** * *** *
8437986 AAA--AATTGATAAATTAAATATAATTAAACTAATAAAATTTA-ATTCGAA-TCAATTTAAATTT
254 AAATCAAAT--TAAATT-AATAAAATTAATTTAAT-AAA-TCACATAAAAATTCAATTCAAATTT
* *
8438047 ATATCAAATTTTAAAAATTTATAATATTATACAATA-AAAAACACTAAATCAATTTTAATT-AGA
314 ATATCAAATTTTAAAAATTTATAATATTATATAATATAAAAACACTAAATCAA-TTCAATTGA-A
* *** *
8438110 ATCTTTATCATC-TTCGAATAAAAGTGCAATTATTATGAAGTGATATATCAACCGCTACTTTAAA
377 ATCATTATCATCATTCGAATAAAAGTGCAATTATTATGAAAAAATATGTCAACCGCTACTTTAAA
* * *
8438174 ATCTAAACAATTAACT-TAGTGGTGCAGGACGATTT-CTGGTTTAGTTTCATCGTAACAATTGCT
442 ATCTAAACAATTAA-TGTAGTGGTGCAGGACGATTTAC-GGCTTAGTTTCATCGCAACAATTACT
* * *
8438237 TTATTTA-TTATTATTATTATTATTATTATTATTATTATTATTATTCCTCTTCTCTTCTTTGAGC
505 TTATTTATTTATTATTATTA-TATTATTAATATTA-TATAATTATT-CTCTTCTCTTATTTGAGC
* * *
8438301 TACTAATTTTAGTACTTCACACTTATTTTTTTA---T-TTTGATTTTTATTCAAAAATTATATAG
567 TACTAATTTTAGTACTTCACACCTATTTTTTTATTTTATTTTATTTTTATTTAAAAATTATATAG
* *
8438362 CAATTTCATTAGCTTAACGTAAAACA
632 CAATTTTATTAGCTTAACGTAAAATA
8438388 AATTTT
1 AATTTT
8438394 ATGATATAAT
Statistics
Matches: 1630, Mismatches: 180, Indels: 243
0.79 0.09 0.12
Matches are distributed among these distances:
609 4 0.00
610 19 0.01
611 23 0.01
612 2 0.00
614 43 0.03
615 1 0.00
616 1 0.00
617 2 0.00
618 5 0.00
619 1 0.00
620 37 0.02
621 89 0.05
622 57 0.03
623 8 0.00
624 5 0.00
625 26 0.02
626 84 0.05
627 5 0.00
628 9 0.01
629 44 0.03
630 60 0.04
631 2 0.00
635 1 0.00
636 1 0.00
637 2 0.00
638 77 0.05
639 26 0.02
640 4 0.00
641 2 0.00
642 69 0.04
643 15 0.01
644 3 0.00
646 39 0.02
647 7 0.00
648 15 0.01
649 45 0.03
650 8 0.00
651 44 0.03
652 19 0.01
653 90 0.06
654 152 0.09
655 73 0.04
656 104 0.06
657 27 0.02
658 13 0.01
659 6 0.00
660 9 0.01
661 7 0.00
662 91 0.06
663 150 0.09
664 4 0.00
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.43
Consensus pattern (657 bp):
AATTTTTTATTTGATGTAAATTAAATTTAAATATTAAATATATAAATTAAATTCAGATATATTAA
ATTTAAGATAAAAATTAAAAAATTAAAAAAAATCAAACTGAATCAAATCAAACTATATATTTTTA
TTAATTTTTATATATTTAAATTTTTATAAAATAAAAATAATAATTTTATATTAAAATATATTAAA
TTTTATATTAAAATAATATATAAAAATAAATTTAATAAATAAAATCAAATTAATTAATAAATCAA
ATTAAATTAATAAAATTAATTTAATAAATCACATAAAAATTCAATTCAAATTTATATCAAATTTT
AAAAATTTATAATATTATATAATATAAAAACACTAAATCAATTCAATTGAAATCATTATCATCAT
TCGAATAAAAGTGCAATTATTATGAAAAAATATGTCAACCGCTACTTTAAAATCTAAACAATTAA
TGTAGTGGTGCAGGACGATTTACGGCTTAGTTTCATCGCAACAATTACTTTATTTATTTATTATT
ATTATATTATTAATATTATATAATTATTCTCTTCTCTTATTTGAGCTACTAATTTTAGTACTTCA
CACCTATTTTTTTATTTTATTTTATTTTTATTTAAAAATTATATAGCAATTTTATTAGCTTAACG
TAAAATA
Found at i:8437418 original size:26 final size:25
Alignment explanation
Indices: 8437362--8437419 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 25
8437352 ATAAACAAAA
* *
8437362 TCAAATTAAATTAATAAAATTTAAT
1 TCAAATTAAATCAATAAAATTCAAT
* *
8437387 TTAAATTAAATCATATAAAATTCGAT
1 TCAAATTAAATCA-ATAAAATTCAAT
8437413 TCAAATT
1 TCAAATT
8437420 TATATCAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
25 11 0.41
26 16 0.59
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.40
Consensus pattern (25 bp):
TCAAATTAAATCAATAAAATTCAAT
Found at i:8437777 original size:13 final size:13
Alignment explanation
Indices: 8437759--8437799 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
8437749 TTTGATATAA
8437759 ATTAAATTTAGAT
1 ATTAAATTTAGAT
* * *
8437772 ATTAAATATATAA
1 ATTAAATTTAGAT
8437785 ATTAAATTTAGAT
1 ATTAAATTTAGAT
8437798 AT
1 AT
8437800 ATTGAATTTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (13 bp):
ATTAAATTTAGAT
Found at i:8438249 original size:3 final size:3
Alignment explanation
Indices: 8438241--8438281 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
8438231 ATTGCTTTAT
8438241 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8438282 CCTCTTCTCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8438433 original size:32 final size:32
Alignment explanation
Indices: 8438392--8438452 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
8438382 AAAACAAATT
*
8438392 TTATGATATAATAAATTAATTAATAAATTATC
1 TTATGATATAATAAATTAATAAATAAATTATC
*
8438424 TTATTATATAATAAATTAATAAATAAATT
1 TTATGATATAATAAATTAATAAATAAATT
8438453 TTAATTATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (32 bp):
TTATGATATAATAAATTAATAAATAAATTATC
Found at i:8439605 original size:16 final size:16
Alignment explanation
Indices: 8439584--8439624 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
8439574 TTTGATTAAA
*
8439584 TTTGAATTTAAATAAT
1 TTTGAATTTAAAAAAT
*
8439600 TTTGAATTAAAAAAAT
1 TTTGAATTTAAAAAAT
*
8439616 TTTGTATTT
1 TTTGAATTT
8439625 GTCATTTTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (16 bp):
TTTGAATTTAAAAAAT
Found at i:8441727 original size:18 final size:17
Alignment explanation
Indices: 8441704--8441737 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8441694 TATTCTAATG
8441704 AAATTAAAATTTTAATAT
1 AAATTAAAA-TTTAATAT
*
8441722 AAATTATAATTTAATA
1 AAATTAAAATTTAATA
8441738 ATTTTTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AAATTAAAATTTAATAT
Found at i:8445110 original size:24 final size:25
Alignment explanation
Indices: 8445069--8445115 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
8445059 TTTTAAAATA
8445069 TATTTTAAAATATG-AAAATATTAT
1 TATTTTAAAATATGAAAAATATTAT
* * *
8445093 TATTTTAATATTTTAAAAATATT
1 TATTTTAAAATATGAAAAATATT
8445116 TGGGCTTGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (25 bp):
TATTTTAAAATATGAAAAATATTAT
Found at i:8446690 original size:25 final size:25
Alignment explanation
Indices: 8446644--8446701 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
8446634 AGAAATTATG
* *
8446644 AAATAAATTTTTTTAATTTAATGTAA
1 AAATAAATTTTATTAATATAAT-TAA
*
8446670 AAATGAATTTTATT-ATATAATTAA
1 AAATAAATTTTATTAATATAATTAA
8446694 ATAATAAA
1 A-AATAAA
8446702 AATTATTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 4 0.15
25 11 0.41
26 12 0.44
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (25 bp):
AAATAAATTTTATTAATATAATTAA
Found at i:8446735 original size:22 final size:22
Alignment explanation
Indices: 8446690--8446734 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
8446680 TATTATATAA
8446690 TTAAATAATAAAAATTATTATT
1 TTAAATAATAAAAATTATTATT
8446712 TTAAA-AATTAAAAA-TATTATT
1 TTAAATAA-TAAAAATTATTATT
8446733 TT
1 TT
8446735 TTATAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
TTAAATAATAAAAATTATTATT
Found at i:8446742 original size:22 final size:21
Alignment explanation
Indices: 8446693--8446748 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
8446683 TATATAATTA
8446693 AATAA-TAAAAATTATTATTTT
1 AATAATTAAAAA-TATTATTTT
*
8446714 AAAAATTAAAAATATTATTTTT
1 AATAATTAAAAATATTA-TTTT
* *
8446736 TATAATTTAAAAT
1 AATAATTAAAAAT
8446749 TTTTATTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 9 0.31
22 20 0.69
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
AATAATTAAAAATATTATTTT
Found at i:8446753 original size:16 final size:17
Alignment explanation
Indices: 8446732--8446778 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
8446722 AAAATATTAT
*
8446732 TTTTTATAATTTA-AAA
1 TTTTTATAATATATAAA
*
8446748 TTTTTATTATATATAAA
1 TTTTTATAATATATAAA
8446765 TTTTAATATAATAT
1 TTTT--TATAATAT
8446779 CTTTAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 11 0.44
17 7 0.28
19 7 0.28
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTTTATAATATATAAA
Found at i:8446754 original size:23 final size:24
Alignment explanation
Indices: 8446699--8446757 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
8446689 ATTAAATAAT
8446699 AAAA-ATTATTATTTTAAAAATTA
1 AAAATATTATTATTTTAAAAATTA
* *
8446722 AAAATATTATT-TTTTATAATTTA
1 AAAATATTATTATTTTAAAAATTA
* *
8446745 AAATTTTTATTAT
1 AAAATATTATTAT
8446758 ATATAAATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 23 0.77
24 7 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
AAAATATTATTATTTTAAAAATTA
Found at i:8449579 original size:25 final size:25
Alignment explanation
Indices: 8449551--8449599 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
8449541 GCCGTATTAC
*
8449551 GAGGATAAGAGTTGGAGTTACAGAT
1 GAGGATAAGAGTAGGAGTTACAGAT
8449576 GAGGATAAGAGTAGGAGTTACAGA
1 GAGGATAAGAGTAGGAGTTACAGA
8449600 ATTTGAACTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.39, C:0.04, G:0.37, T:0.20
Consensus pattern (25 bp):
GAGGATAAGAGTAGGAGTTACAGAT
Found at i:8461022 original size:30 final size:31
Alignment explanation
Indices: 8460971--8461056 Score: 95
Period size: 30 Copynumber: 2.7 Consensus size: 31
8460961 TCTAAACCCC
*
8460971 TAAAATCCAAAATCCCCTAAAAT-CTAAAATAT
1 TAAAATCCAAAAT--CCTAAAATCCGAAAATAT
* *
8461003 TAAAATCCAAAATCCTAAAATCCGAAACTCT
1 TAAAATCCAAAATCCTAAAATCCGAAAATAT
*
8461034 T-AAATCCAAAATCCCTTAAATCC
1 TAAAATCCAAAAT-CCTAAAATCC
8461057 AAACCCCTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
30 19 0.40
31 16 0.33
32 13 0.27
ACGTcount: A:0.49, C:0.26, G:0.01, T:0.24
Consensus pattern (31 bp):
TAAAATCCAAAATCCTAAAATCCGAAAATAT
Found at i:8461056 original size:16 final size:16
Alignment explanation
Indices: 8460954--8461091 Score: 83
Period size: 15 Copynumber: 8.9 Consensus size: 16
8460944 TTCTAAAACT
* *
8460954 CCTTAAAT-CTAAACC
1 CCTTAAATCCAAAATC
*
8460969 CCTAAAATCCAAAATCC
1 CCTTAAATCCAAAAT-C
* *
8460986 CCTAAAATCTAAAAT-
1 CCTTAAATCCAAAATC
*
8461001 -ATTAAAATCCAAAAT-
1 CCTT-AAATCCAAAATC
* *
8461016 CCTAAAATCCGAAA-C
1 CCTTAAATCCAAAATC
*
8461031 TCTTAAATCCAAAATC
1 CCTTAAATCCAAAATC
*
8461047 CCTTAAATCC-AAACC
1 CCTTAAATCCAAAATC
* * *
8461062 CCTAAAATTCGAAA-C
1 CCTTAAATCCAAAATC
8461077 CCTTAAAATCCAAAA
1 CCTT-AAATCCAAAA
8461092 CCCCCTAAAA
Statistics
Matches: 95, Mismatches: 20, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
14 1 0.01
15 53 0.56
16 26 0.27
17 15 0.16
ACGTcount: A:0.48, C:0.28, G:0.01, T:0.22
Consensus pattern (16 bp):
CCTTAAATCCAAAATC
Found at i:8461092 original size:16 final size:16
Alignment explanation
Indices: 8460964--8461168 Score: 122
Period size: 16 Copynumber: 12.9 Consensus size: 16
8460954 CCTTAAATCT
*
8460964 AAACCCCTAAAATCCA
1 AAACCCTTAAAATCCA
* *
8460980 AAATCCCCTAAAATCTA
1 AAA-CCCTTAAAATCCA
**
8460997 AAA-TATTAAAATCCA
1 AAACCCTTAAAATCCA
* *
8461012 AAATCC-TAAAATCCG
1 AAACCCTTAAAATCCA
*
8461027 AAACTCTT-AAATCCA
1 AAACCCTTAAAATCCA
8461042 AAATCCCTT-AAATCC-
1 AAA-CCCTTAAAATCCA
* * *
8461057 AAACCCCTAAAATTCG
1 AAACCCTTAAAATCCA
8461073 AAACCCTTAAAATCCA
1 AAACCCTTAAAATCCA
* *
8461089 AAACCCCCTAAAATCTGA
1 AAA-CCCTTAAAATC-CA
* *
8461107 AATCCC---AAA-CCTTT
1 AAACCCTTAAAATCC--A
8461121 AAACCCTTAAAATCCA
1 AAACCCTTAAAATCCA
* **
8461137 AAACCCCTAAAATTAA
1 AAACCCTTAAAATCCA
8461153 AAACCCCTTAAAATCC
1 AAA-CCCTTAAAATCC
8461169 GAAATCTCAA
Statistics
Matches: 144, Mismatches: 30, Indels: 29
0.71 0.15 0.14
Matches are distributed among these distances:
13 1 0.01
14 12 0.08
15 40 0.28
16 46 0.32
17 40 0.28
18 5 0.03
ACGTcount: A:0.47, C:0.30, G:0.01, T:0.21
Consensus pattern (16 bp):
AAACCCTTAAAATCCA
Found at i:8461147 original size:24 final size:24
Alignment explanation
Indices: 8461073--8461147 Score: 80
Period size: 24 Copynumber: 3.1 Consensus size: 24
8461063 CTAAAATTCG
8461073 AAACCCTTAAAATCCAAAACCCCCT
1 AAACCCTTAAAATCCAAAA-CCCCT
** * * **
8461098 AAAATC-TGAAATCCCAAACCTTT
1 AAACCCTTAAAATCCAAAACCCCT
8461121 AAACCCTTAAAATCCAAAACCCCT
1 AAACCCTTAAAATCCAAAACCCCT
8461145 AAA
1 AAA
8461148 ATTAAAAACC
Statistics
Matches: 37, Mismatches: 12, Indels: 3
0.71 0.23 0.06
Matches are distributed among these distances:
23 7 0.19
24 26 0.70
25 4 0.11
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (24 bp):
AAACCCTTAAAATCCAAAACCCCT
Found at i:8461195 original size:64 final size:63
Alignment explanation
Indices: 8461057--8461219 Score: 197
Period size: 64 Copynumber: 2.6 Consensus size: 63
8461047 CCTTAAATCC
* * * *
8461057 AAACCCCTAAAATTCGAAACCCTTAAAATCCAAAACCCCCTAAAATCTGAAATCCCAAACCTTT
1 AAACCCTTAAAA-TCCAAACCCTTAAAATCAAAAACCCCCTAAAATCCGAAATCCCAAACCTTT
* * * *
8461121 AAACCCTTAAAATCCAAAACCCCTAAAATTAAAAACCCCTTAAAATCCGAAATCTCAAACCTTT
1 AAACCCTTAAAATCC-AAACCCTTAAAATCAAAAACCCCCTAAAATCCGAAATCCCAAACCTTT
* *
8461185 AAA-CTTTTAAATCCAAACCCTT-AAATC-AAAACCCC
1 AAACCCTTAAAATCCAAACCCTTAAAATCAAAAACCCC
8461220 AAACCTCAAA
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
60 8 0.09
61 4 0.05
62 7 0.08
63 11 0.13
64 56 0.65
ACGTcount: A:0.45, C:0.31, G:0.02, T:0.21
Consensus pattern (63 bp):
AAACCCTTAAAATCCAAACCCTTAAAATCAAAAACCCCCTAAAATCCGAAATCCCAAACCTTT
Found at i:8461252 original size:14 final size:14
Alignment explanation
Indices: 8461233--8461280 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
8461223 CCTCAAATTT
*
8461233 TAAAATCGAAACCC
1 TAAAATCAAAACCC
* *
8461247 TAAAATCTTCAAACTC
1 TAAAATC--AAAACCC
8461263 TAAAATCAAAACCC
1 TAAAATCAAAACCC
8461277 TAAA
1 TAAA
8461281 CCTTCCATAC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 16 0.57
16 12 0.43
ACGTcount: A:0.52, C:0.25, G:0.02, T:0.21
Consensus pattern (14 bp):
TAAAATCAAAACCC
Found at i:8461297 original size:30 final size:28
Alignment explanation
Indices: 8461203--8461335 Score: 85
Period size: 29 Copynumber: 4.6 Consensus size: 28
8461193 AAATCCAAAC
*
8461203 CCTT-AAATCAAAACCCCAAACC-TCAAA
1 CCTTAAAATCAAAACCCTAAACCTTC-AA
** * *
8461230 TTTTAAAATCGAAACCCTAAAATCTTCAA
1 CCTTAAAATCAAAACCCT-AAACCTTCAA
*
8461259 ACTCTAAAATCAAAACCCTAAACCTTCCATA
1 CCT-TAAAATCAAAACCCTAAACCTT-CA-A
* *
8461290 CCTTAAAA-CCAAACCCTAAAGCCCTTAAA
1 CCTTAAAATCAAAACCCTAAA--CCTTCAA
* *
8461319 ACTT-AAATCTAAACCCT
1 CCTTAAAATCAAAACCCT
8461336 TAAAATTCGA
Statistics
Matches: 83, Mismatches: 14, Indels: 16
0.73 0.12 0.14
Matches are distributed among these distances:
27 2 0.02
28 14 0.17
29 36 0.43
30 24 0.29
31 7 0.08
ACGTcount: A:0.45, C:0.31, G:0.02, T:0.23
Consensus pattern (28 bp):
CCTTAAAATCAAAACCCTAAACCTTCAA
Found at i:8461327 original size:58 final size:56
Alignment explanation
Indices: 8461204--8461335 Score: 131
Period size: 58 Copynumber: 2.3 Consensus size: 56
8461194 AATCCAAACC
* ** * * *
8461204 CTTAAATCAAAACCCCAAACCTCAAATTTTAAAATCGAAACCCTAAAATCTTCAAA
1 CTTAAATCAAAACCCTAAACCTCAAACCTTAAAATCCAAACCCTAAAACCTTAAAA
* *
8461260 CTCTAAAATCAAAACCCTAAACCTTCCATACCTTAAAA-CCAAACCCTAAAGCCCTTAAAA
1 CT-T-AAATCAAAACCCTAAACC-T-CAAACCTTAAAATCCAAACCCTAAA-ACCTTAAAA
*
8461320 CTTAAATCTAAACCCT
1 CTTAAATCAAAACCCT
8461336 TAAAATTCGA
Statistics
Matches: 62, Mismatches: 9, Indels: 8
0.78 0.11 0.10
Matches are distributed among these distances:
56 2 0.03
57 1 0.02
58 29 0.47
59 13 0.21
60 17 0.27
ACGTcount: A:0.45, C:0.30, G:0.02, T:0.23
Consensus pattern (56 bp):
CTTAAATCAAAACCCTAAACCTCAAACCTTAAAATCCAAACCCTAAAACCTTAAAA
Found at i:8462511 original size:26 final size:26
Alignment explanation
Indices: 8462482--8462534 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
8462472 CAATGGTTAG
8462482 ATTTAATTAATTTTATTTGATATTTA
1 ATTTAATTAATTTTATTTGATATTTA
* ** * *
8462508 ATTTGATTTCTTTTATTTTATTTTTA
1 ATTTAATTAATTTTATTTGATATTTA
8462534 A
1 A
8462535 AAAACATTCA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (26 bp):
ATTTAATTAATTTTATTTGATATTTA
Found at i:8466156 original size:13 final size:12
Alignment explanation
Indices: 8466112--8466148 Score: 56
Period size: 13 Copynumber: 2.9 Consensus size: 12
8466102 AAGATTTCAA
8466112 AAAAAAAAAAAC
1 AAAAAAAAAAAC
8466124 AAAACAAAAAAATC
1 AAAA-AAAAAAA-C
8466138 AAAAAAAAAAA
1 AAAAAAAAAAA
8466149 GAGAAAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.17
13 14 0.61
14 5 0.22
ACGTcount: A:0.89, C:0.08, G:0.00, T:0.03
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:8466156 original size:14 final size:13
Alignment explanation
Indices: 8466111--8466148 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
8466101 CAAGATTTCA
8466111 AAAAAAAAAAAAC
1 AAAAAAAAAAAAC
*
8466124 AAAACAAAAAAATC
1 AAAA-AAAAAAAAC
8466138 AAAAAAAAAAA
1 AAAAAAAAAAA
8466149 GAGAAAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.89, C:0.08, G:0.00, T:0.03
Consensus pattern (13 bp):
AAAAAAAAAAAAC
Found at i:8466738 original size:12 final size:11
Alignment explanation
Indices: 8466721--8466776 Score: 62
Period size: 11 Copynumber: 5.1 Consensus size: 11
8466711 GATGGAACAT
8466721 AAAAAAATAAA
1 AAAAAAATAAA
8466732 CAAAAAAAT-AA
1 -AAAAAAATAAA
*
8466743 AAAAAAGTAAA
1 AAAAAAATAAA
8466754 AAAAAAA-AAGA
1 AAAAAAATAA-A
*
8466765 AAAAAAACAAA
1 AAAAAAATAAA
8466776 A
1 A
8466777 GGGACATATT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
10 9 0.23
11 20 0.51
12 10 0.26
ACGTcount: A:0.88, C:0.04, G:0.04, T:0.05
Consensus pattern (11 bp):
AAAAAAATAAA
Found at i:8466753 original size:22 final size:20
Alignment explanation
Indices: 8466721--8466776 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 20
8466711 GATGGAACAT
8466721 AAAAAAATAAACAAAAAAATA
1 AAAAAAATAAACAAAAAAA-A
8466742 AAAAAAAGTAAA-AAAAAAAA
1 AAAAAAA-TAAACAAAAAAAA
*
8466762 AGAAAAA-AAACAAAA
1 AAAAAAATAAACAAAA
8466777 GGGACATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
18 3 0.09
19 4 0.12
20 7 0.22
21 14 0.44
22 4 0.12
ACGTcount: A:0.88, C:0.04, G:0.04, T:0.05
Consensus pattern (20 bp):
AAAAAAATAAACAAAAAAAA
Found at i:8468357 original size:12 final size:12
Alignment explanation
Indices: 8468336--8468370 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
8468326 TTGCATTCTT
*
8468336 ACATTGGCATTG
1 ACATTTGCATTG
8468348 ACATTTGCATTG
1 ACATTTGCATTG
*
8468360 ACATTTTCATT
1 ACATTTGCATT
8468371 AGCATCATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (12 bp):
ACATTTGCATTG
Found at i:8468541 original size:41 final size:41
Alignment explanation
Indices: 8468487--8468573 Score: 140
Period size: 41 Copynumber: 2.1 Consensus size: 41
8468477 TATTTAAAAT
*
8468487 GAACCAATCTCAATCAAGATTTCAAAGCCTCTGTTTA-AGAG
1 GAACCAATCTCAATCAAGATTTCAAAGCCTCCGTTTAGAG-G
*
8468528 GAACCAATTTCAATCAAGATTTCAAAGCCTCCGTTTAGAGG
1 GAACCAATCTCAATCAAGATTTCAAAGCCTCCGTTTAGAGG
8468569 GAACC
1 GAACC
8468574 TTCCTCAGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 41 0.95
42 2 0.05
ACGTcount: A:0.36, C:0.23, G:0.16, T:0.25
Consensus pattern (41 bp):
GAACCAATCTCAATCAAGATTTCAAAGCCTCCGTTTAGAGG
Found at i:8469078 original size:121 final size:121
Alignment explanation
Indices: 8468630--8469087 Score: 631
Period size: 121 Copynumber: 3.8 Consensus size: 121
8468620 AAAGCCATGT
* * * * * *
8468630 TTAAAAAGATTTTTAAATTTTTAAAGTTTTATTGCCTCTAATTATGAAAAGCATTCAAAGATTTT
1 TTAAAAA-ATTTTCAAAATTTTAAAGTTTCATTACCTCTGATTATGAGAAGCATTCAAAGATTTT
* *
8468695 GAGATTTGTAAGACCTCCGAGCATAATCTCTAAAAG--C-ACGCACGACTTTCAAGA
65 GAGATTTGTAAGACCTCCGGGCATAATCTCTAAAAGCTCTGCGCACGACTTTCAAGA
*
8468749 TTAAAAAATTTTCAAATTTTTAAAG-TTCATTACCTCTGATTATGA-AGAGCATTCAAAGATTTT
1 TTAAAAAATTTTCAAAATTTTAAAGTTTCATTACCTCTGATTATGAGA-AGCATTCAAAGATTTT
* * * * *
8468812 GAAATTTGTAAGACCTCTGGACATAATCTCTAAAAGCTTTTGCGCATGACTTTCAAGA
65 GAGATTTGTAAGACCTCCGGGCATAATCTCTAAAAGC-TCTGCGCACGACTTTCAAGA
* * * *
8468870 TTAAAAGATTTTCAAAATTTTAAAGTTTTATTACCTTTGATTATGAGGAGCATTCAAAGATTTTG
1 TTAAAAAATTTTCAAAATTTTAAAGTTTCATTACCTCTGATTATGAGAAGCATTCAAAGATTTTG
* *
8468935 AGATTTGTAAGACCTTCAGGCATAATCTCTAAAAGCCTCTGCGCACGACTTTCAAGA
66 AGATTTGTAAGACCTCCGGGCATAATCTCTAAAAG-CTCTGCGCACGACTTTCAAGA
* *
8468992 TTAAAAAATTTT-AAAATTTTAAAGTTTCATTGCCTCTGATTATGAGAAGCATTCAAAAATTTTG
1 TTAAAAAATTTTCAAAATTTTAAAGTTTCATTACCTCTGATTATGAGAAGCATTCAAAGATTTTG
*
8469056 AGATTTGTAAGATCTCCGGGCATAATCTCTAA
66 AGATTTGTAAGACCTCCGGGCATAATCTCTAA
8469088 GACCTTCGGG
Statistics
Matches: 299, Mismatches: 32, Indels: 14
0.87 0.09 0.04
Matches are distributed among these distances:
116 1 0.00
117 65 0.22
118 17 0.06
119 7 0.02
121 114 0.38
122 94 0.31
123 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36
Consensus pattern (121 bp):
TTAAAAAATTTTCAAAATTTTAAAGTTTCATTACCTCTGATTATGAGAAGCATTCAAAGATTTTG
AGATTTGTAAGACCTCCGGGCATAATCTCTAAAAGCTCTGCGCACGACTTTCAAGA
Found at i:8469082 original size:243 final size:239
Alignment explanation
Indices: 8468633--8469087 Score: 682
Period size: 243 Copynumber: 1.9 Consensus size: 239
8468623 GCCATGTTTA
* * *
8468633 AAAAGATTTTTAAATTTTTAAAGTTTTATTGCCTCTAATTATGAAAAGCATTCAAAGATTTTGAG
1 AAAAGATTTTCAAAATTTTAAAGTTTTATTACCTCTAATTATGAAAAGCATTCAAAGATTTTGAG
*
8468698 ATTTGTAAGACCTCCGAGCATAATCTCTAAAAGCACGCACGACTTTCAAGATTAAAAAATTTTCA
66 ATTTGTAAGACCTCAGAGCATAATCTCTAAAAGCACGCACGACTTTCAAGATTAAAAAATTTTCA
* *
8468763 AATTTTTAAAGTTCATTACCTCTGATTATGAAGAGCATTCAAAGATTTTGAAATTTGTAAGACCT
131 AAATTTTAAAGTTCATTACCTCTGATTATGAAGAGCATTCAAAAATTTTGAAATTTGTAAGACCT
*
8468828 CTGGACATAATCTCTAAAAGCTTTTGCGCATGACTTTCAAGATT
196 CCGGACATAATCTCTAAAAGCTTTTGCGCATGACTTTCAAGATT
* * **
8468872 AAAAGATTTTCAAAATTTTAAAGTTTTATTACCTTTGATTATGAGGAGCATTCAAAGATTTTGAG
1 AAAAGATTTTCAAAATTTTAAAGTTTTATTACCTCTAATTATGAAAAGCATTCAAAGATTTTGAG
*
8468937 ATTTGTAAGACCTTCAG-GCATAATCTCTAAAAGCCTCTGCGCACGACTTTCAAGATTAAAAAAT
66 ATTTGTAAGACC-TCAGAGCATAATCTCTAAAAG---C-ACGCACGACTTTCAAGATTAAAAAAT
* *
8469001 TTT-AAAATTTTAAAGTTTCATTGCCTCTGATTATG-AGAAGCATTCAAAAATTTTGAGATTTGT
126 TTTCAAAATTTTAAAG-TTCATTACCTCTGATTATGAAG-AGCATTCAAAAATTTTGAAATTTGT
* *
8469064 AAGATCTCCGGGCATAATCTCTAA
189 AAGACCTCCGGACATAATCTCTAA
8469088 GACCTTCGGG
Statistics
Matches: 193, Mismatches: 16, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
239 86 0.45
240 3 0.02
242 14 0.07
243 90 0.47
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36
Consensus pattern (239 bp):
AAAAGATTTTCAAAATTTTAAAGTTTTATTACCTCTAATTATGAAAAGCATTCAAAGATTTTGAG
ATTTGTAAGACCTCAGAGCATAATCTCTAAAAGCACGCACGACTTTCAAGATTAAAAAATTTTCA
AAATTTTAAAGTTCATTACCTCTGATTATGAAGAGCATTCAAAAATTTTGAAATTTGTAAGACCT
CCGGACATAATCTCTAAAAGCTTTTGCGCATGACTTTCAAGATT
Found at i:8469114 original size:22 final size:22
Alignment explanation
Indices: 8469069--8469128 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
8469059 TTTGTAAGAT
* *
8469069 CTCCGGGCATAATCTCTAAGAC
1 CTCCGGGCATAATTTCTAAAAC
*
8469091 CTTCGGGCATAACTTTC-AAAAC
1 CTCCGGGCATAA-TTTCTAAAAC
*
8469113 CTCCGGACATAATTTC
1 CTCCGGGCATAATTTC
8469129 GATTCGCGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
21 4 0.12
22 25 0.78
23 3 0.09
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (22 bp):
CTCCGGGCATAATTTCTAAAAC
Found at i:8469218 original size:23 final size:23
Alignment explanation
Indices: 8469188--8469259 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
8469178 TATCTCAGTC
* *
8469188 GATTCTGTAAGACCTTCGGGCAT
1 GATTCTGTAAGACCTCCAGGCAT
8469211 GATTCTGTAAGACCTCCAGGCAT
1 GATTCTGTAAGACCTCCAGGCAT
* *
8469234 -AATCTCTAAGACCTCCAGGCAT
1 GATTCTGTAAGACCTCCAGGCAT
8469256 GATT
1 GATT
8469260 TCTAAGATCT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
22 20 0.47
23 23 0.53
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (23 bp):
GATTCTGTAAGACCTCCAGGCAT
Found at i:8469246 original size:22 final size:22
Alignment explanation
Indices: 8469195--8469279 Score: 82
Period size: 22 Copynumber: 3.8 Consensus size: 22
8469185 GTCGATTCTG
* * * *
8469195 TAAGACCTTCGGGCATGATTCTG
1 TAAGACCTCCAGGCAT-AATCTC
8469218 TAAGACCTCCAGGCATAATCTC
1 TAAGACCTCCAGGCATAATCTC
* *
8469240 TAAGACCTCCAGGCATGATTTC
1 TAAGACCTCCAGGCATAATCTC
*
8469262 TAAGATCTCC-GAGCATAA
1 TAAGACCTCCAG-GCATAA
8469280 ATTTGATTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
21 1 0.02
22 38 0.72
23 14 0.26
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (22 bp):
TAAGACCTCCAGGCATAATCTC
Found at i:8469343 original size:155 final size:154
Alignment explanation
Indices: 8469057--8469390 Score: 451
Period size: 155 Copynumber: 2.2 Consensus size: 154
8469047 AAAATTTTGA
* *
8469057 GATTTGTAAGATCTCCGGGCATAATCTCTAAGACCTTCGGGCATAACTTTCAAAACCTCCGGACA
1 GATTTGTAAGATCTCCGGGCATAATCTCTAAGACCTCCAGGCATAACTTTCAAAACCTCCGGACA
* * * *
8469122 TAATTTCGATTCGCGATGTTATTCTGATCGATTCTTTATCTATCGACTTATGGTGTTATCTCAGT
66 TAATTTCGATTCGCAATGTTATCCCGATCGATTCTTTATCTATCGACTTATGATGTTATCTCAGT
*
8469187 CGATTCTGTAAGACCTTCGGGCAT
131 CGATTCTGTAAGACCTTCGGACAT
* * * * *
8469211 GATTCTGTAAGACCTCCAGGCATAATCTCTAAGACCTCCAGGCATGA-TTTCTAAGATCTCC-GA
1 GATT-TGTAAGATCTCCGGGCATAATCTCTAAGACCTCCAGGCATAACTTTC-AAAACCTCCGGA
* * *
8469274 GCATAAATTT-GATTTGCAATGTTATCCCGATCGATTCTTTATCTTTCGACTTGTGATGTTATC-
64 -CAT-AATTTCGATTCGCAATGTTATCCCGATCGATTCTTTATCTATCGACTTATGATGTTATCT
8469337 CAAGTCGATTCTGTAAGACCTTCGGACAT
127 C-AGTCGATTCTGTAAGACCTTCGGACAT
*
8469366 GATTTTTAAGATCTCCGGGCATAAT
1 GATTTGTAAGATCTCCGGGCATAAT
8469391 TTTGATTCAC
Statistics
Matches: 157, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
154 29 0.18
155 123 0.78
156 5 0.03
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (154 bp):
GATTTGTAAGATCTCCGGGCATAATCTCTAAGACCTCCAGGCATAACTTTCAAAACCTCCGGACA
TAATTTCGATTCGCAATGTTATCCCGATCGATTCTTTATCTATCGACTTATGATGTTATCTCAGT
CGATTCTGTAAGACCTTCGGACAT
Found at i:8469440 original size:110 final size:109
Alignment explanation
Indices: 8469240--8469590 Score: 445
Period size: 110 Copynumber: 3.2 Consensus size: 109
8469230 GCATAATCTC
* * * *
8469240 TAAGACCTCCAGG-CATGATTTCTAAGATCTCCGAGCATAAATTTGATTTGCAATGTTATCCCGA
1 TAAGACCTCC-GGACATGATTTCTAAGATCTCCGGGCATAATTTTGATTCGCGATGTTATCCCGA
*
8469304 TCGATTCTTTATCTTTCGACTTGTGATGTTATCCAAGTCGATTCTG
65 TTGATTC-TTATCTTTCGACTTGTGATGTTATCCAAGTCGATTCTG
* * *
8469350 TAAGACCTTCGGACATGATTTTTAAGATCTCCGGGCATAATTTTGATTCACGATGTTATCCCGAT
1 TAAGACCTCCGGACATGATTTCTAAGATCTCCGGGCATAATTTTGATTCGCGATGTTATCCCGAT
* *
8469415 TGATTACTTATCTTTCAACTCGTGATGTTATCTCAA-TCGATTCTG
66 TGATT-CTTATCTTTCGACTTGTGATGTTATC-CAAGTCGATTCTG
* * * * *
8469460 TAAGATCTCCAGACATGATTTCTAAGACCTCTGGGCATAATTTTGATTCGCGATGTTATCCCAAT
1 TAAGACCTCCGGACATGATTTCTAAGATCTCCGGGCATAATTTTGATTCGCGATGTTATCCCGAT
* * * * * *
8469525 TGATTTTTTATTTTTTGACTTGCGGTGTTATCCCAGTCGATTCTG
66 TGA-TTCTTATCTTTCGACTTGTGATGTTATCCAAGTCGATTCTG
*
8469570 CAAGACCTCCGGACATGATTT
1 TAAGACCTCCGGACATGATTT
8469591 TGTAAGACTT
Statistics
Matches: 207, Mismatches: 29, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
109 4 0.02
110 197 0.95
111 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (109 bp):
TAAGACCTCCGGACATGATTTCTAAGATCTCCGGGCATAATTTTGATTCGCGATGTTATCCCGAT
TGATTCTTATCTTTCGACTTGTGATGTTATCCAAGTCGATTCTG
Found at i:8469625 original size:22 final size:23
Alignment explanation
Indices: 8469571--8469630 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
8469561 TCGATTCTGC
* *
8469571 AAGACCTCCGGACATGATTTTGT
1 AAGACCTTCGGGCATGATTTTGT
*
8469594 AAGACTTTCGGGCATGATTTT-T
1 AAGACCTTCGGGCATGATTTTGT
8469616 AAGACCTTCGGGCAT
1 AAGACCTTCGGGCAT
8469631 AAATTCAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
22 15 0.45
23 18 0.55
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (23 bp):
AAGACCTTCGGGCATGATTTTGT
Found at i:8469913 original size:74 final size:73
Alignment explanation
Indices: 8469651--8470359 Score: 545
Period size: 74 Copynumber: 9.6 Consensus size: 73
8469641 CGCGGTGTTC
* * * *
8469651 TCCCGATCGA-TTCTTTA-TTTTTCTAACT-TGAGATTTAGTCCCAGTCATCGTTAATCTTTGGC
1 TCCCGATC-ATTTCTATAGTTTTTCTGACTGTG-G-TTTAGTCCCAGTCATCTTTAATCTTTGAC
8469713 TCGTGGTTTAA
63 TCGTGGTTTAA
* * * * * *
8469724 TCCCGATCATTTC-ATTA-ATTCTCTGACTTGCGGCTTAGTCTCAATCATCTTTAATCTTTG-CT
1 TCCCGATCATTTCTA-TAGTTTTTCTGAC-TGTGGTTTAGTCCCAGTCATCTTTAATCTTTGACT
*
8469786 TGTGGTTTAA
64 CGTGGTTTAA
* * * * *
8469796 TCCCGATTATTTTTATAGTTTTTTTGGCT-TACGATTTAGTCCCAGTCATCTTTAATCTTTGACT
1 TCCCGATCATTTCTATAGTTTTTCTGACTGT--GGTTTAGTCCCAGTCATCTTTAATCTTTGACT
*
8469860 CGTGATTTAA
64 CGTGGTTTAA
* * * * * * * * *
8469870 TCTCGATCATCTCTATAGTTTTTTTGACTCATGGTTTAATCCCAGTCATTTTTATTTTTCTCACT
1 TCCCGATCATTTCTATAGTTTTTCTGACT-GTGGTTTAGTCCCAGTCATCTTTAATCTT-TGACT
8469935 CGTGGTTTAA
64 CGTGGTTTAA
* * * * * *
8469945 TCTCGGTCATTTC-ATTAATTCTT-TGACT-TGCAATTCAGTCCC-GATCATCTTTAATCTTT-A
1 TCCCGATCATTTCTA-TAGTTTTTCTGACTGTG--GTTTAGTCCCAG-TCATCTTTAATCTTTGA
8470005 GCTCGTGGTTTAA
62 -CTCGTGGTTTAA
* * *
8470018 TCTCAATCATTTC-ATTAGTTTTTCTGACT-TGCGATTTAGTCCCATTCATCTTTAATCTTTGAC
1 TCCCGATCATTTCTA-TAGTTTTTCTGACTGTG-G-TTTAGTCCCAGTCATCTTTAATCTTTGAC
8470081 TCGTGGTTTAA
63 TCGTGGTTTAA
* * * * *
8470092 TCCCAATCATTTC-ATTAATTTCT-TGACTTGCGGTTCAGTCCCAGTCATCTTTAATCTTTGACT
1 TCCCGATCATTTCTA-TAGTTTTTCTGAC-TGTGGTTTAGTCCCAGTCATCTTTAATCTTTGACT
*
8470155 CATGGTTTAA
64 CGTGGTTTAA
* * * ** * * * *
8470165 TCCCGATCACTTCTATAGTTTTCCTGACTCGTGGTTTAATCCCAGTTGTTTTTATTTTTCTCACT
1 TCCCGATCATTTCTATAGTTTTTCTGACT-GTGGTTTAGTCCCAGTCATCTTTAATCTT-TGACT
8470230 CGTGGTTTAA
64 CGTGGTTTAA
* *
8470240 TCCCGATCATTTCTATAGTTTTCCTGACT-TGCAGTTTAGTCTC-GATCATCTTTAATCTTTGAC
1 TCCCGATCATTTCTATAGTTTTTCTGACTGTG--GTTTAGTCCCAG-TCATCTTTAATCTTTGAC
* *
8470303 TTGTAGTTTAA
63 TCGTGGTTTAA
* * * *
8470314 TGCCGATCATTTTTATAGTTTCTCTGACTCGTGGTTTAATCCCAGT
1 TCCCGATCATTTCTATAGTTTTTCTGACT-GTGGTTTAGTCCCAGT
8470360 TGTTTTTTAT
Statistics
Matches: 511, Mismatches: 92, Indels: 65
0.76 0.14 0.10
Matches are distributed among these distances:
72 29 0.06
73 168 0.33
74 219 0.43
75 92 0.18
76 3 0.01
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (73 bp):
TCCCGATCATTTCTATAGTTTTTCTGACTGTGGTTTAGTCCCAGTCATCTTTAATCTTTGACTCG
TGGTTTAA
Found at i:8470204 original size:39 final size:38
Alignment explanation
Indices: 8470150--8470356 Score: 151
Period size: 39 Copynumber: 5.5 Consensus size: 38
8470140 CTTTAATCTT
*
8470150 TGACTCATGGTTTAATCCCGATCACTTCTATAGTTTTCC
1 TGACTCGTGGTTTAATCCCGATCACTT-TATAGTTTTCC
** * *
8470189 TGACTCGTGGTTTAATCCC-AGT-TGTTTTTA-TTTTTC
1 TGACTCGTGGTTTAATCCCGA-TCACTTTATAGTTTTCC
* *
8470225 TCACTCGTGGTTTAATCCCGATCATTTCTATAGTTTTCC
1 TGACTCGTGGTTTAATCCCGATCACTT-TATAGTTTTCC
* ** * * *
8470264 TGACTTGCAGTTTAGTCTCGATCATCTTTA-A-TCTT--
1 TGACTCGTGGTTTAATCCCGATCA-CTTTATAGTTTTCC
* * * *
8470299 TGACTTGTAGTTTAATGCCGATCATTTTTATAG-TTTCTC
1 TGACTCGTGGTTTAATCCCGATCA-CTTTATAGTTTTC-C
8470338 TGACTCGTGGTTTAATCCC
1 TGACTCGTGGTTTAATCCC
8470357 AGTTGTTTTT
Statistics
Matches: 130, Mismatches: 27, Indels: 22
0.73 0.15 0.12
Matches are distributed among these distances:
35 25 0.19
36 27 0.21
37 9 0.07
38 7 0.05
39 60 0.46
40 2 0.02
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.45
Consensus pattern (38 bp):
TGACTCGTGGTTTAATCCCGATCACTTTATAGTTTTCC
Found at i:8470230 original size:295 final size:293
Alignment explanation
Indices: 8469651--8470325 Score: 810
Period size: 295 Copynumber: 2.3 Consensus size: 293
8469641 CGCGGTGTTC
* * * * * *
8469651 TCCCGATCGA-TTCTTTATTTTTCTAACTTG-AGATTTAGTCCC-AGTCATCGTTAATCTTTGGC
1 TCCCGATC-ATTTCTATAATTTTCTGACTTGCA-ATTCAGTCCCGA-TCATCTTTAATCTTTAGC
* * *
8469713 TCGTGGTTTAATCCCGATCATTTCATTAATTCTCTGACTTGCGGCTTAGTCTCAATCATCTTTAA
63 TCGTGGTTTAATCCCAATCATTTCATTAATTCTCTGACTTGCGACTTAGTCCCAATCATCTTTAA
* * * * * *
8469778 TCTTTGCTTGTGGTTTAATCCCGATTATTTTTATAGTTTTTTTGGCTTACGATTTAGTCCCAGTC
128 TCTTTGCTCGTGGTTTAATCCCAATCATTTTTATAG-TTTCTTGACTTACGATTCAGTCCCAGTC
* * **
8469843 ATCTTTAATCTTTGACTCGTGATTTAATCTCGATCATCTCTATAGTTTTTTTGACTCATGGTTTA
192 ATCTTTAATCTTTGACTCATGATTTAATCCCGATCATCTCTATAGTTTTCCTGACTCATGGTTTA
8469908 ATCCCAGTCATTTTTATTTTTCTCACTCGTGGTTTAA
257 ATCCCAGTCATTTTTATTTTTCTCACTCGTGGTTTAA
* *
8469945 TCTCGGTCATTTC-ATTAATTCTT-TGACTTGCAATTCAGTCCCGATCATCTTTAATCTTTAGCT
1 TCCCGATCATTTCTA-TAATT-TTCTGACTTGCAATTCAGTCCCGATCATCTTTAATCTTTAGCT
* * * * *
8470008 CGTGGTTTAATCTCAATCATTTCATTAGTTTTTCTGACTTGCGATTTAGTCCCATTCATCTTTAA
64 CGTGGTTTAATCCCAATCATTTCATTA-ATTCTCTGACTTGCGACTTAGTCCCAATCATCTTTAA
* *
8470073 TCTTTGACTCGTGGTTTAATCCCAATCATTTCATTA-A-TTTCTTGACTTGCGGTTCAGTCCCAG
128 TCTTTG-CTCGTGGTTTAATCCCAATCATTT--TTATAGTTTCTTGACTTACGATTCAGTCCCAG
* *
8470136 TCATCTTTAATCTTTGACTCATGGTTTAATCCCGATCA-CTTCTATAGTTTTCCTGACTCGTGGT
190 TCATCTTTAATCTTTGACTCATGATTTAATCCCGATCATC-TCTATAGTTTTCCTGACTCATGGT
**
8470200 TTAATCCCAGTTGTTTTTATTTTTCTCACTCGTGGTTTAA
254 TTAATCCCAGTCATTTTTATTTTTCTCACTCGTGGTTTAA
* * * *
8470240 TCCCGATCATTTCTATAGTTTTCCTGACTTGCAGTTTAGTCTCGATCATCTTTAATCTTT-GACT
1 TCCCGATCATTTCTATAATTTT-CTGACTTGCAATTCAGTCCCGATCATCTTTAATCTTTAG-CT
* * * *
8470304 TGTAGTTTAATGCCGATCATTT
64 CGTGGTTTAATCCCAATCATTT
8470326 TTATAGTTTC
Statistics
Matches: 324, Mismatches: 43, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
293 1 0.00
294 73 0.23
295 172 0.53
296 74 0.23
297 1 0.00
298 3 0.01
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.46
Consensus pattern (293 bp):
TCCCGATCATTTCTATAATTTTCTGACTTGCAATTCAGTCCCGATCATCTTTAATCTTTAGCTCG
TGGTTTAATCCCAATCATTTCATTAATTCTCTGACTTGCGACTTAGTCCCAATCATCTTTAATCT
TTGCTCGTGGTTTAATCCCAATCATTTTTATAGTTTCTTGACTTACGATTCAGTCCCAGTCATCT
TTAATCTTTGACTCATGATTTAATCCCGATCATCTCTATAGTTTTCCTGACTCATGGTTTAATCC
CAGTCATTTTTATTTTTCTCACTCGTGGTTTAA
Found at i:8470569 original size:102 final size:102
Alignment explanation
Indices: 8470463--8470887 Score: 555
Period size: 102 Copynumber: 4.2 Consensus size: 102
8470453 CATCATTTTC
* * * * **
8470463 TGACTCGCGGTTTAGTCTTGATCTTTTTATTCTCCGATTTACGATTCAATCTTGATCAT-TTTAA
1 TGACTCGTGGTTTAATCTTGATCTTTTTATTCTCCGATTCACGGTTCAATCCCGATC-TCTTTAA
* *
8470527 TTCAAAGTCGCAGTTTAATCTCAATTGTTGTTATCCTT
65 TTCAAAGTCGCAGTTTAATCTCGATTATTGTTATCCTT
* * * * *
8470565 TGACTCGCGATTTAATCATGATCTTTTTATTCTTCGATTCACGGTTCAATCTCGATCTCTTTAAT
1 TGACTCGTGGTTTAATCTTGATCTTTTTATTCTCCGATTCACGGTTCAATCCCGATCTCTTTAAT
* * *
8470630 TTAAAGTTGCAGTTTAATCTCGATTGTTGTTATCCTT
66 TCAAAGTCGCAGTTTAATCTCGATTATTGTTATCCTT
* * * *
8470667 TGACTCATGGTTTAATCTTAATCTTTTTATTCTCTGATTCGCGGTTCAATCCCGATCTCTTTAAT
1 TGACTCGTGGTTTAATCTTGATCTTTTTATTCTCCGATTCACGGTTCAATCCCGATCTCTTTAAT
* *
8470732 TCAAAGTCACAGTTTGATCTCGATTATTGTTATCCTT
66 TCAAAGTCGCAGTTTAATCTCGATTATTGTTATCCTT
* * * *** * *
8470769 TGACTCGTGATTTAATCCTGATCTTTTTATTCTTCGATTTGTGGTTCAATCCTGATCTCTTTCAT
1 TGACTCGTGGTTTAATCTTGATCTTTTTATTCTCCGATTCACGGTTCAATCCCGATCTCTTTAAT
*
8470834 TCAAAGTCGCAGTTTAATCTCGATTATTGTTATCCTC
66 TCAAAGTCGCAGTTTAATCTCGATTATTGTTATCCTT
8470871 TGACTCGTGGTTTAATC
1 TGACTCGTGGTTTAATC
8470888 CCGATCGCTT
Statistics
Matches: 284, Mismatches: 38, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
101 1 0.00
102 283 1.00
ACGTcount: A:0.21, C:0.20, G:0.14, T:0.46
Consensus pattern (102 bp):
TGACTCGTGGTTTAATCTTGATCTTTTTATTCTCCGATTCACGGTTCAATCCCGATCTCTTTAAT
TCAAAGTCGCAGTTTAATCTCGATTATTGTTATCCTT
Found at i:8471022 original size:35 final size:35
Alignment explanation
Indices: 8470979--8471090 Score: 156
Period size: 35 Copynumber: 3.2 Consensus size: 35
8470969 CAAAGTCACA
*
8470979 GTTTAATCTCGATTGTTGTTATTCTTTGATTTGCG
1 GTTTAATCTCGATTGTTGTTATTCTTTGATTCGCG
*
8471014 GTTTAATCTCAATTGTTGTTATTCTTTGATTCGCG
1 GTTTAATCTCGATTGTTGTTATTCTTTGATTCGCG
* * *
8471049 GTTTAATCTCGATCT-CT-TTATTCTCTGATTCGTG
1 GTTTAATCTCGAT-TGTTGTTATTCTTTGATTCGCG
8471083 GTTTAATC
1 GTTTAATC
8471091 CTAATCCTTA
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
34 23 0.33
35 46 0.66
36 1 0.01
ACGTcount: A:0.16, C:0.15, G:0.17, T:0.52
Consensus pattern (35 bp):
GTTTAATCTCGATTGTTGTTATTCTTTGATTCGCG
Found at i:8472587 original size:22 final size:23
Alignment explanation
Indices: 8472542--8472593 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
8472532 TTATTTTTGC
*
8472542 ATAATAAATTTTTAAATTTGTTA
1 ATAATAAATGTTTAAATTTGTTA
*
8472565 A-AATAAATGTTT-AATTATTTTA
1 ATAATAAATGTTTAAATT-TGTTA
8472587 ATAATAA
1 ATAATAA
8472594 TAAAATTGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 4 0.16
22 15 0.60
23 6 0.24
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (23 bp):
ATAATAAATGTTTAAATTTGTTA
Found at i:8473027 original size:78 final size:76
Alignment explanation
Indices: 8472923--8473223 Score: 292
Period size: 78 Copynumber: 3.9 Consensus size: 76
8472913 TAGGTTTTTA
* *
8472923 AAACTCCTTAAATCTAAACCCCTAAAATCCAAAATCCCCTAAAATCCAAAATTTTAAAATCCAAA
1 AAAC-CCTTAAATCCAAACCCCTAAAATCCAAAA-CCCCTAAAATCCAAAATCTTAAAATCCAAA
* *
8472988 ATTCTAAA-TTTT
64 ATCCTAAACCTTT
* * * * * **
8473000 GAAACCCCTAAATCCAAAACCCCTAAAATCCGAAACCCCTCAAATCCAAAAGCCCATAAAATCTG
1 -AAACCCTTAAATCC-AAACCCCTAAAATCCAAAACCCCTAAAATCCAAAA--TCTTAAAATCCA
*
8473065 AAATCCGAAACCTTT
62 AAATCCTAAACCTTT
** *
8473080 AAACCCTTAAATCCAAACCCCTAAAATCCAAAACCCCTAAAATTAAAAATCCCTTAAAATCCGAA
1 AAACCCTTAAATCCAAACCCCTAAAATCCAAAACCCCTAAAATCCAAAAT--CTTAAAATCCAAA
8473145 AT-CTCAAACCTTT
64 ATCCT-AAACCTTT
* * * * *
8473158 AAACTCTTAAATCCAAA-CCCTTAAAT-CAAAACCCC-AAACTTC-AAATTTTAAAA-CCAAAAT
1 AAACCCTTAAATCCAAACCCCTAAAATCCAAAACCCCTAAAATCCAAAATCTTAAAATCCAAAAT
8473218 CCTAAA
66 CCTAAA
8473224 ATCTTCAAAC
Statistics
Matches: 188, Mismatches: 27, Indels: 23
0.79 0.11 0.10
Matches are distributed among these distances:
71 9 0.05
72 8 0.04
74 4 0.02
75 5 0.03
76 9 0.05
77 32 0.17
78 90 0.48
79 28 0.15
80 3 0.02
ACGTcount: A:0.47, C:0.29, G:0.02, T:0.22
Consensus pattern (76 bp):
AAACCCTTAAATCCAAACCCCTAAAATCCAAAACCCCTAAAATCCAAAATCTTAAAATCCAAAAT
CCTAAACCTTT
Found at i:8473099 original size:14 final size:15
Alignment explanation
Indices: 8473083--8473122 Score: 62
Period size: 16 Copynumber: 2.6 Consensus size: 15
8473073 AACCTTTAAA
*
8473083 CCCTTAAATCCAAAC
1 CCCTAAAATCCAAAC
8473098 CCCTAAAATCCAAAAC
1 CCCTAAAATCC-AAAC
8473114 CCCTAAAAT
1 CCCTAAAAT
8473123 TAAAAATCCC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (15 bp):
CCCTAAAATCCAAAC
Found at i:8473127 original size:15 final size:16
Alignment explanation
Indices: 8472938--8473141 Score: 118
Period size: 15 Copynumber: 12.9 Consensus size: 16
8472928 CCTTAAATCT
8472938 AAACCCCTAAAATCCA
1 AAACCCCTAAAATCCA
8472954 AAATCCCCTAAAATCCA
1 AAA-CCCCTAAAATCCA
***
8472971 AAA-TTTTAAAATCCA
1 AAACCCCTAAAATCCA
** * ***
8472986 AAA-TTCTAAATTTTG
1 AAACCCCTAAAATCCA
8473001 AAACCCCT-AAATCCA
1 AAACCCCTAAAATCCA
*
8473016 AAACCCCTAAAATCCG
1 AAACCCCTAAAATCCA
*
8473032 AAACCCCTCAAATCCA
1 AAACCCCTAAAATCCA
* **
8473048 AAAGCCCATAAAATCTG
1 AAA-CCCCTAAAATCCA
* * *
8473065 AAA-TCC-GAAA-CCTTT
1 AAACCCCTAAAATCC--A
*
8473080 AAA-CCCTTAAATCC-
1 AAACCCCTAAAATCCA
8473094 AAACCCCTAAAATCCA
1 AAACCCCTAAAATCCA
**
8473110 AAACCCCTAAAATTAA
1 AAACCCCTAAAATCCA
*
8473126 AAATCCCTTAAAATCC
1 AAA-CCCCTAAAATCC
8473142 GAAATCTCAA
Statistics
Matches: 143, Mismatches: 34, Indels: 21
0.72 0.17 0.11
Matches are distributed among these distances:
13 1 0.01
14 6 0.04
15 49 0.34
16 48 0.34
17 39 0.27
ACGTcount: A:0.47, C:0.30, G:0.02, T:0.21
Consensus pattern (16 bp):
AAACCCCTAAAATCCA
Found at i:8473159 original size:23 final size:22
Alignment explanation
Indices: 8473130--8473182 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
8473120 AATTAAAAAT
8473130 CCCTTAAAATCCGAAATCTCAAA
1 CCCTTAAAATCCGAAATC-CAAA
* * **
8473153 CCTTTAAACTCTTAAATCCAAA
1 CCCTTAAAATCCGAAATCCAAA
8473175 CCCTTAAA
1 CCCTTAAA
8473183 TCAAAACCCC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
22 11 0.44
23 14 0.56
ACGTcount: A:0.42, C:0.30, G:0.02, T:0.26
Consensus pattern (22 bp):
CCCTTAAAATCCGAAATCCAAA
Found at i:8473180 original size:14 final size:14
Alignment explanation
Indices: 8473158--8473191 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8473148 TCAAACCTTT
* *
8473158 AAACTCTTAAATCC
1 AAACCCTTAAATCA
8473172 AAACCCTTAAATCA
1 AAACCCTTAAATCA
8473186 AAACCC
1 AAACCC
8473192 CAAACTTCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (14 bp):
AAACCCTTAAATCA
Done.