Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 48 of 100
Found at i:8733274 original size:26 final size:24
Alignment explanation
Indices: 8733152--8733263 Score: 59
Period size: 26 Copynumber: 4.4 Consensus size: 24
8733142 TAATAATAAA
* * *
8733152 ATATAACATAACATAATATTATACT
1 ATATAATATAATATAATATAATA-T
8733177 AATAATAATAATAATAATAATATAATGAT
1 -AT-ATAAT-ATAAT-ATAATATAAT-AT
* *
8733206 A-AT-ATAATAATATAATATAACACA
1 ATATAAT-ATAATATAATATAATA-T
*
8733230 ATATAATAATAATAAAATATAATAT
1 ATATAAT-ATAATATAATATAATAT
*
8733255 A-ATACTATA
1 ATATAATATA
8733264 GTAATGTAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
23 4 0.06
24 14 0.20
25 11 0.16
26 21 0.30
27 4 0.06
28 5 0.07
29 10 0.14
30 1 0.01
ACGTcount: A:0.60, C:0.05, G:0.01, T:0.34
Consensus pattern (24 bp):
ATATAATATAATATAATATAATAT
Found at i:8739497 original size:2 final size:2
Alignment explanation
Indices: 8739492--8739532 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
8739482 TATATATATA
* *
8739492 TG TG TG TA TG TG TG TG TG TG TG TG TG TG TG TG AG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
8739533 ATATGTATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.05, C:0.00, G:0.46, T:0.49
Consensus pattern (2 bp):
TG
Found at i:8742366 original size:36 final size:37
Alignment explanation
Indices: 8742321--8742400 Score: 110
Period size: 36 Copynumber: 2.2 Consensus size: 37
8742311 ATAAATTTTC
* *
8742321 AATTATACCAACATATTGAGGATA-ATTTTTATAAA-A
1 AATTATACCAACATATT-AGAATATATTTTTAAAAATA
*
8742357 AATTTTACCAACATATTAGAATATATTTTTAAAAATA
1 AATTATACCAACATATTAGAATATATTTTTAAAAATA
8742394 AATTATA
1 AATTATA
8742401 TTTTTAAATG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
35 5 0.13
36 26 0.68
37 7 0.18
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.39
Consensus pattern (37 bp):
AATTATACCAACATATTAGAATATATTTTTAAAAATA
Found at i:8745136 original size:37 final size:38
Alignment explanation
Indices: 8745063--8745136 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 38
8745053 ATATTTTTTA
* * *
8745063 AAAAATTTGACTAACATATTGGAAGATAATTTTTAAAG
1 AAAAATTTGACCAACATATTGAAAAATAATTTTTAAAG
8745101 AAAAATTT-ACCAACATATTGAAAAAT-ATTTCTTAAA
1 AAAAATTTGACCAACATATTGAAAAATAATTT-TTAAA
8745137 ATAAATTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 4 0.12
37 20 0.62
38 8 0.25
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.34
Consensus pattern (38 bp):
AAAAATTTGACCAACATATTGAAAAATAATTTTTAAAG
Found at i:8745750 original size:13 final size:13
Alignment explanation
Indices: 8745732--8745760 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
8745722 TTTGTATGAC
8745732 ATAAACTCATTCT
1 ATAAACTCATTCT
8745745 ATAAACTCATTCT
1 ATAAACTCATTCT
8745758 ATA
1 ATA
8745761 GAGGTTATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (13 bp):
ATAAACTCATTCT
Found at i:8747696 original size:29 final size:30
Alignment explanation
Indices: 8747645--8747715 Score: 108
Period size: 29 Copynumber: 2.4 Consensus size: 30
8747635 TGAATAATTA
*
8747645 TAAATTATAATAAAATATTTAATATAATATT
1 TAAATTATAA-AAAATATTTAATATAATACT
*
8747676 TAAATTTTAAAAAAT-TTTAATATAATACT
1 TAAATTATAAAAAATATTTAATATAATACT
8747705 TAAATTATAAA
1 TAAATTATAAA
8747716 TTTAAAATCA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 23 0.62
30 5 0.14
31 9 0.24
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (30 bp):
TAAATTATAAAAAATATTTAATATAATACT
Found at i:8748603 original size:30 final size:30
Alignment explanation
Indices: 8748569--8748630 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
8748559 TTTTCCTTTT
8748569 CTTTTGAATAATAATGGTTAAACCTTTACA
1 CTTTTGAATAATAATGGTTAAACCTTTACA
8748599 CTTTTGAATAATAATGGTTAAACCTTTACA
1 CTTTTGAATAATAATGGTTAAACCTTTACA
8748629 CT
1 CT
8748631 ATTATGATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.15, G:0.10, T:0.40
Consensus pattern (30 bp):
CTTTTGAATAATAATGGTTAAACCTTTACA
Found at i:8751024 original size:28 final size:26
Alignment explanation
Indices: 8750984--8751044 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
8750974 CAAAAAGCTT
* * *
8750984 AAATTTTTAAAAATATATATTAAAATTA
1 AAATATTTAAAAATATA-A-AAAAATGA
*
8751012 AAATATTTGAAAATATAAAAAAATGA
1 AAATATTTAAAAATATAAAAAAATGA
8751038 AAATATT
1 AAATATT
8751045 ATTATTTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 13 0.45
27 1 0.03
28 15 0.52
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (26 bp):
AAATATTTAAAAATATAAAAAAATGA
Found at i:8752931 original size:21 final size:19
Alignment explanation
Indices: 8752892--8752939 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 19
8752882 TAAAATTTTT
*
8752892 ATTAAAAATAAGTGAATAAAA
1 ATTAAAAATAAATGAAT--AA
8752913 ATTAAAAATAAAT-AGATAA
1 ATTAAAAATAAATGA-ATAA
8752932 ATTAAAAA
1 ATTAAAAA
8752940 ATTAAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 10 0.40
20 1 0.04
21 14 0.56
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (19 bp):
ATTAAAAATAAATGAATAA
Found at i:8753102 original size:12 final size:12
Alignment explanation
Indices: 8753085--8753109 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8753075 TTAAATTAAA
8753085 AATAATATTTGT
1 AATAATATTTGT
8753097 AATAATATTTGT
1 AATAATATTTGT
8753109 A
1 A
8753110 TATATTATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
AATAATATTTGT
Found at i:8755431 original size:21 final size:22
Alignment explanation
Indices: 8755407--8755453 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
8755397 ATATATATTT
8755407 ATTATTAAT-TTTAAGTTTATA
1 ATTATTAATATTTAAGTTTATA
* *
8755428 ATTA-TAATATTTAATTTTATT
1 ATTATTAATATTTAAGTTTATA
8755449 ATTAT
1 ATTAT
8755454 CATTATTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTATTAATATTTAAGTTTATA
Found at i:8757567 original size:14 final size:14
Alignment explanation
Indices: 8757544--8757581 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
8757534 CACATATAAC
8757544 AATTATATTATAATT
1 AATTA-ATTATAATT
8757559 AATTAATTATAATT
1 AATTAATTATAATT
*
8757573 TA-TAATTAT
1 AATTAATTAT
8757582 GTAAGATCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 7 0.32
14 10 0.45
15 5 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
AATTAATTATAATT
Found at i:8775069 original size:30 final size:30
Alignment explanation
Indices: 8775017--8775107 Score: 78
Period size: 30 Copynumber: 3.0 Consensus size: 30
8775007 AGAACTATAG
* * * *
8775017 TAGCAATAGTAGTGACAGCACCTAGATGGA
1 TAGCAAAAGCAGTCACACCACCTAGATGGA
*
8775047 TAGCAAAAGCAGTCACACCACCTAAATGGA
1 TAGCAAAAGCAGTCACACCACCTAGATGGA
* **
8775077 CAATAGAAA-CAAG-CACACCACCTAGATGGA
1 TAGCA-AAAGC-AGTCACACCACCTAGATGGA
8775107 T
1 T
8775108 TACAGCAACA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
30 44 0.90
31 5 0.10
ACGTcount: A:0.42, C:0.23, G:0.20, T:0.15
Consensus pattern (30 bp):
TAGCAAAAGCAGTCACACCACCTAGATGGA
Found at i:8778723 original size:15 final size:15
Alignment explanation
Indices: 8778703--8778734 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8778693 GATGTAAGCC
8778703 TCGCAAAATCACTCA
1 TCGCAAAATCACTCA
8778718 TCGCAAAATCACTCA
1 TCGCAAAATCACTCA
8778733 TC
1 TC
8778735 ATAACACTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.34, G:0.06, T:0.22
Consensus pattern (15 bp):
TCGCAAAATCACTCA
Found at i:8786256 original size:25 final size:27
Alignment explanation
Indices: 8786228--8786281 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
8786218 TTAAAATTTC
* *
8786228 ATAATTTT-TAATAT-AAAAACTAAAA
1 ATAATTTTAAAATATAAAAAAATAAAA
8786253 ATAATTTTAAAATATAAAAAAATAAAA
1 ATAATTTTAAAATATAAAAAAATAAAA
8786280 AT
1 AT
8786282 TTAGATGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.32
26 5 0.20
27 12 0.48
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (27 bp):
ATAATTTTAAAATATAAAAAAATAAAA
Found at i:8786306 original size:22 final size:21
Alignment explanation
Indices: 8786249--8786308 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
8786239 TATAAAAACT
*
8786249 AAAAATAATTTTAAAATATAAA
1 AAAAATAATTTT-AGATATAAA
* * *
8786271 AAAATAAAAATTTAGATGTTAAA
1 AAAA-ATAATTTTAGAT-ATAAA
8786294 AAAAATAATTTTAGA
1 AAAAATAATTTTAGA
8786309 ACATTTCAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
22 16 0.53
23 14 0.47
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (21 bp):
AAAAATAATTTTAGATATAAA
Found at i:8787234 original size:18 final size:18
Alignment explanation
Indices: 8787202--8787260 Score: 75
Period size: 17 Copynumber: 3.3 Consensus size: 18
8787192 AAATTTTAAA
*
8787202 TTATTTAAAATTATAAAAT
1 TTATTTAATA-TATAAAAT
*
8787221 TTATTTATTATATAAAAT
1 TTATTTAATATATAAAAT
*
8787239 TTA-TTAATAAATAAAAT
1 TTATTTAATATATAAAAT
8787256 TTATT
1 TTATT
8787261 CAAATTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
17 15 0.43
18 12 0.34
19 8 0.23
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTATTTAATATATAAAAT
Found at i:8787319 original size:28 final size:28
Alignment explanation
Indices: 8787265--8787320 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
8787255 TTTATTCAAA
*
8787265 TTATTTATTAATATATAAATAATAAATT
1 TTATTTATTAATATATAAATAAAAAATT
8787293 TTATTTATT-ATAT-TAAATTAACAAAATT
1 TTATTTATTAATATATAAA-TAA-AAAATT
8787321 ATTTTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 4 0.16
27 7 0.28
28 14 0.56
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (28 bp):
TTATTTATTAATATATAAATAAAAAATT
Found at i:8787704 original size:27 final size:26
Alignment explanation
Indices: 8787673--8787735 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
8787663 AATAAAAATT
8787673 TTAAATTATTTAAAATTTATAAAATCAA
1 TTAAATTATTTAAAATTT-TAAAAT-AA
* *
8787701 -TAAATAATTTAAAATTTTATAATAA
1 TTAAATTATTTAAAATTTTAAAATAA
8787726 TTAAATTATT
1 TTAAATTATT
8787736 AAGTAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
25 2 0.06
26 13 0.42
27 16 0.52
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (26 bp):
TTAAATTATTTAAAATTTTAAAATAA
Found at i:8789822 original size:26 final size:25
Alignment explanation
Indices: 8789793--8789847 Score: 101
Period size: 26 Copynumber: 2.2 Consensus size: 25
8789783 AACCTTATAT
8789793 CTCAAGATCAATCTTACAATTTTATC
1 CTCAAGATCAATCTTACAATTTTA-C
8789819 CTCAAGATCAATCTTACAATTTTAC
1 CTCAAGATCAATCTTACAATTTTAC
8789844 CTCA
1 CTCA
8789848 CAAAAAGGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.35, C:0.25, G:0.04, T:0.36
Consensus pattern (25 bp):
CTCAAGATCAATCTTACAATTTTAC
Found at i:8792133 original size:12 final size:12
Alignment explanation
Indices: 8792116--8792142 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8792106 ATAAAAGTTT
8792116 ATTAAAATAAAA
1 ATTAAAATAAAA
8792128 ATTAAAATAAAA
1 ATTAAAATAAAA
8792140 ATT
1 ATT
8792143 TATTTAAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
ATTAAAATAAAA
Found at i:8792150 original size:17 final size:16
Alignment explanation
Indices: 8792096--8792146 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
8792086 AATTATTTTT
*
8792096 TTTATTTAAAATAAAAG
1 TTTA-TTAAAATAAAAA
8792113 TTTATTAAAAT-AAAA
1 TTTATTAAAATAAAAA
8792128 ---ATTAAAATAAAAA
1 TTTATTAAAATAAAAA
8792141 TTTATT
1 TTTATT
8792147 TAAACACAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
12 8 0.28
13 4 0.14
15 3 0.10
16 10 0.34
17 4 0.14
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (16 bp):
TTTATTAAAATAAAAA
Found at i:8793947 original size:27 final size:27
Alignment explanation
Indices: 8793913--8793968 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
8793903 AATGCTTATT
8793913 TTGCATTTGAACCAAATGAAGACTTTG
1 TTGCATTTGAACCAAATGAAGACTTTG
8793940 TTGCATTTGAACCAAATGAAGACTTTG
1 TTGCATTTGAACCAAATGAAGACTTTG
8793967 TT
1 TT
8793969 AGTTATTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (27 bp):
TTGCATTTGAACCAAATGAAGACTTTG
Found at i:8796726 original size:25 final size:25
Alignment explanation
Indices: 8796681--8796736 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 25
8796671 ATGATAGTAT
*
8796681 TTAATTGAAACAATTGGGATTGGTA
1 TTAATTGAAACAATTAGGATTGGTA
* **
8796706 TTAATTGAAACAATTATGATTTTTA
1 TTAATTGAAACAATTAGGATTGGTA
8796731 TTAATT
1 TTAATT
8796737 AAAAACTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.45
Consensus pattern (25 bp):
TTAATTGAAACAATTAGGATTGGTA
Found at i:8801473 original size:20 final size:19
Alignment explanation
Indices: 8801442--8801497 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
8801432 GAAAAATTTT
8801442 TCTAAAA-ATTTTAAAAAA
1 TCTAAAATATTTTAAAAAA
* *
8801460 TGTTAAAATTTTTTAAAAAA
1 T-CTAAAATATTTTAAAAAA
8801480 TCTAAAATATTTTAAAAA
1 TCTAAAATATTTTAAAAA
8801498 TTATACAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 1 0.03
19 20 0.62
20 11 0.34
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (19 bp):
TCTAAAATATTTTAAAAAA
Found at i:8801515 original size:37 final size:36
Alignment explanation
Indices: 8801474--8801550 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
8801464 AAAATTTTTT
* *
8801474 AAAAAATCTAAAATATTT-TAAAAATTATACAAAATTA
1 AAAAAATATAAAATCTTTAT-AAAATTATA-AAAATTA
* *
8801511 AAAAAATATGAAATCTTTATAAAATTGTAAAAATTA
1 AAAAAATATAAAATCTTTATAAAATTATAAAAATTA
8801547 AAAA
1 AAAA
8801551 TTTATTAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
36 11 0.31
37 23 0.66
38 1 0.03
ACGTcount: A:0.62, C:0.04, G:0.03, T:0.31
Consensus pattern (36 bp):
AAAAAATATAAAATCTTTATAAAATTATAAAAATTA
Found at i:8801559 original size:26 final size:25
Alignment explanation
Indices: 8801526--8801576 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
8801516 ATATGAAATC
*
8801526 TTTATAAAA-TTGTAAAAATTAAAAA
1 TTTATAAAACTT-TAAAAATAAAAAA
8801551 TTTATTAAAACTTTAAAAATAAAAAA
1 TTTA-TAAAACTTTAAAAATAAAAAA
8801577 AATCTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 17 0.74
27 2 0.09
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (25 bp):
TTTATAAAACTTTAAAAATAAAAAA
Found at i:8801568 original size:19 final size:19
Alignment explanation
Indices: 8801538--8801636 Score: 80
Period size: 19 Copynumber: 5.3 Consensus size: 19
8801528 TATAAAATTG
*
8801538 TAAAAA-TTAAAAATTTAT
1 TAAAAATTTAAAAATTTAA
*
8801556 TAAAACTTTAAAAA--TAA
1 TAAAAATTTAAAAATTTAA
* *
8801573 AAAAAATCTTTAAAATTTAA
1 TAAAAAT-TTAAAAATTTAA
* *
8801593 TAAAAATCTAAAAAATT-A
1 TAAAAATTTAAAAATTTAA
*
8801611 TGAAAAATTAAAAAATCTTAA
1 T-AAAAATTTAAAAAT-TTAA
8801632 TAAAA
1 TAAAA
8801637 TTTTTTTTCT
Statistics
Matches: 62, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
17 7 0.11
18 13 0.21
19 25 0.40
20 15 0.24
21 2 0.03
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (19 bp):
TAAAAATTTAAAAATTTAA
Found at i:8801591 original size:26 final size:24
Alignment explanation
Indices: 8801512--8801639 Score: 66
Period size: 27 Copynumber: 5.0 Consensus size: 24
8801502 ACAAAATTAA
**
8801512 AAAAATATGAAATCTTTATAAAATTGT
1 AAAAATAAAAAATC-TT-TAAAATT-T
* *
8801539 AAAAATTAAAAATTTATTAAAACTTT
1 AAAAATAAAAAATCT-TTAAAA-TTT
8801565 AAAAATAAAAAAAATCTTTAAAATTT
1 AAAAAT--AAAAAATCTTTAAAATTT
**
8801591 ---AAT-AAAAATCTAAAAAATTAT
1 AAAAATAAAAAATCTTTAAAATT-T
8801612 GAAAAATTAAAAAATCTTAATAAAATTT
1 -AAAAA-TAAAAAATCTT--TAAAATTT
8801640 TTTTTCTTAA
Statistics
Matches: 78, Mismatches: 10, Indels: 25
0.69 0.09 0.22
Matches are distributed among these distances:
20 14 0.18
21 1 0.01
23 3 0.04
25 2 0.03
26 17 0.22
27 27 0.35
28 8 0.10
29 6 0.08
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.34
Consensus pattern (24 bp):
AAAAATAAAAAATCTTTAAAATTT
Found at i:8801616 original size:29 final size:28
Alignment explanation
Indices: 8801531--8801638 Score: 89
Period size: 29 Copynumber: 3.9 Consensus size: 28
8801521 AAATCTTTAT
* *
8801531 AAAATTGTAAAAAT-TAAAAATTTATTA
1 AAAATTATAAAAATCTAAAAAATTATTA
* **
8801558 AAACTT-TAAAAATAAAAAAAATCT-TTA
1 AAAATTATAAAAATCTAAAAAAT-TATTA
* *
8801585 AAATTTAATAAAAATCTAAAAAATTATGA
1 AAAATT-ATAAAAATCTAAAAAATTATTA
8801614 AAAATTA-AAAAATCTTAATAAAATT
1 AAAATTATAAAAATC-TAA-AAAATT
8801639 TTTTTTCTTA
Statistics
Matches: 66, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
26 7 0.11
27 26 0.39
28 6 0.09
29 27 0.41
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (28 bp):
AAAATTATAAAAATCTAAAAAATTATTA
Found at i:8801637 original size:19 final size:18
Alignment explanation
Indices: 8801540--8801638 Score: 60
Period size: 18 Copynumber: 5.3 Consensus size: 18
8801530 TAAAATTGTA
*
8801540 AAAATT-AAAAATTTATT
1 AAAATTAAAAAATTTAAT
* * *
8801557 AAAACTTTAAAAA-TAAAA
1 AAAA-TTAAAAAATTTAAT
**
8801575 AAAATCTTTAAAATTTAAT
1 AAAAT-TAAAAAATTTAAT
*
8801594 AAAAATCTAAAAAATTATGA-
1 -AAAAT-TAAAAAATT-TAAT
8801614 AAAATTAAAAAATCTTAAT
1 AAAATTAAAAAAT-TTAAT
8801633 AAAATT
1 AAAATT
8801639 TTTTTTCTTA
Statistics
Matches: 64, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
17 5 0.08
18 24 0.38
19 20 0.31
20 13 0.20
21 2 0.03
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (18 bp):
AAAATTAAAAAATTTAAT
Found at i:8801776 original size:9 final size:9
Alignment explanation
Indices: 8801756--8801808 Score: 56
Period size: 10 Copynumber: 5.7 Consensus size: 9
8801746 AATTTTATAA
8801756 AAAAATTCTT
1 AAAAATT-TT
8801766 AAAAATTTT
1 AAAAATTTT
8801775 AAAAACTTTTT
1 AAAAA--TTTT
8801786 AAAAA--TT
1 AAAAATTTT
8801793 AAAAATTTT
1 AAAAATTTT
8801802 CAAAAAT
1 -AAAAAT
8801809 ATGAAATATA
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
7 7 0.18
9 9 0.24
10 13 0.34
11 9 0.24
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.38
Consensus pattern (9 bp):
AAAAATTTT
Found at i:8801794 original size:18 final size:17
Alignment explanation
Indices: 8801773--8801808 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8801763 CTTAAAAATT
*
8801773 TTAAAAACTTTTTAAAAA
1 TTAAAAA-TTTTCAAAAA
8801791 TTAAAAATTTTCAAAAA
1 TTAAAAATTTTCAAAAA
8801808 T
1 T
8801809 ATGAAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (17 bp):
TTAAAAATTTTCAAAAA
Found at i:8801843 original size:18 final size:17
Alignment explanation
Indices: 8801822--8801905 Score: 71
Period size: 18 Copynumber: 4.6 Consensus size: 17
8801812 AAATATACTT
8801822 AAAATTTATAAGAAATTAA
1 AAAATTTATAA-AAA-TAA
8801841 AAAATTT-TGAAAAATAAA
1 AAAATTTAT-AAAAAT-AA
* * *
8801859 AAAATTGAAAAAAATTA
1 AAAATTTATAAAAATAA
*
8801876 AAATTTTAATAAAAATAA
1 AAAATTT-ATAAAAATAA
8801894 AAAATCTTATAA
1 AAAAT-TTATAA
8801906 TTTCATAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
17 7 0.13
18 34 0.65
19 11 0.21
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (17 bp):
AAAATTTATAAAAATAA
Found at i:8801858 original size:17 final size:17
Alignment explanation
Indices: 8801838--8801898 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
8801828 TATAAGAAAT
8801838 TAAAAAATTTTGAAAAA
1 TAAAAAATTTTGAAAAA
*
8801855 TAAAAAA-ATTGAAAAA
1 TAAAAAATTTTGAAAAA
*
8801871 -AATTAAAATTTTAATAAAAA
1 TAA--AAAATTTT--GAAAAA
8801891 TAAAAAAT
1 TAAAAAAT
8801899 CTTATAATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
15 2 0.06
16 8 0.23
17 11 0.31
18 2 0.06
19 5 0.14
20 5 0.14
21 2 0.06
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (17 bp):
TAAAAAATTTTGAAAAA
Found at i:8801889 original size:27 final size:26
Alignment explanation
Indices: 8801859--8801933 Score: 71
Period size: 27 Copynumber: 2.8 Consensus size: 26
8801849 GAAAAATAAA
8801859 AAAATTGAAAAAAATTAAAATTTTAAT
1 AAAATT-AAAAAAATTAAAATTTTAAT
* * * *
8801886 AAAAATAAAAAATCTTATAA-TTTCAT
1 AAAATTAAAAAA-ATTAAAATTTTAAT
8801912 AAAATATATAAAAAATTAAAAT
1 AAAAT-TA-AAAAAATTAAAAT
8801934 GTAACATTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 7
0.73 0.14 0.14
Matches are distributed among these distances:
26 15 0.41
27 17 0.46
28 5 0.14
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (26 bp):
AAAATTAAAAAAATTAAAATTTTAAT
Found at i:8802094 original size:18 final size:18
Alignment explanation
Indices: 8802064--8802101 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
8802054 TTTTTTAATT
*
8802064 TTAAGAAAATTTATTTTA
1 TTAAGAAAATTTAATTTA
8802082 TTAA-AAAATTTTAATTTA
1 TTAAGAAAA-TTTAATTTA
8802100 TT
1 TT
8802102 GAATTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TTAAGAAAATTTAATTTA
Found at i:8808383 original size:21 final size:21
Alignment explanation
Indices: 8808342--8808384 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
8808332 GAAATTTGCC
* *
8808342 TGCTTATAAGTTTCATTAATT
1 TGCTTATAAGTTCCATAAATT
8808363 TGCTTATTAAGTTCCA-AAATT
1 TGCTTA-TAAGTTCCATAAATT
8808384 T
1 T
8808385 ATTCATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (21 bp):
TGCTTATAAGTTCCATAAATT
Found at i:8813514 original size:4 final size:4
Alignment explanation
Indices: 8813507--8813545 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
8813497 TCTCTCTCTC
*
8813507 TCTG TCTG TCTG TCCG TCTG TCTG TCTG TCTG TCTG TCT
1 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCT
8813546 CTCATACTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.00, C:0.28, G:0.23, T:0.49
Consensus pattern (4 bp):
TCTG
Found at i:8816263 original size:94 final size:94
Alignment explanation
Indices: 8816111--8816285 Score: 226
Period size: 94 Copynumber: 1.9 Consensus size: 94
8816101 ATGTTAAAAT
* * * **
8816111 GATTAGGCAAATCACGTAAACAATATCAGGTTCAAGGTTTCAAAGGAGGGAAAGTGGCTTAATGG
1 GATTAGGCAAATCACATAAACAATATCAGGCTCAAGGTTTCAAACGAGGGAAAGTGGCTTAATAA
*
8816176 CACAAGCATGTGTTTCCTAATATTGAAAC
66 CACAAGCATGTATTTCCTAATATTGAAAC
* ** * * *
8816205 GATTAGGCAAATCCCATAAATGATATCAGGCTCAAGTTTTGATACGAGGGACAA-TGGCTTAATA
1 GATTAGGCAAATCACATAAACAATATCAGGCTCAAGGTTTCAAACGAGGGA-AAGTGGCTTAATA
8816269 ACACAAGCATGTATTTC
65 ACACAAGCATGTATTTC
8816286 TTAGAAGAAA
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
94 66 0.97
95 2 0.03
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (94 bp):
GATTAGGCAAATCACATAAACAATATCAGGCTCAAGGTTTCAAACGAGGGAAAGTGGCTTAATAA
CACAAGCATGTATTTCCTAATATTGAAAC
Found at i:8818957 original size:19 final size:19
Alignment explanation
Indices: 8818914--8818959 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
8818904 AAATATTTTA
*
8818914 TTAATAAAAAAATAAAAAT
1 TTAATTAAAAAATAAAAAT
* *
8818933 AT-ATTAAAATATAAAAAT
1 TTAATTAAAAAATAAAAAT
8818951 TTAATTAAA
1 TTAATTAAA
8818960 TTTATGAGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
TTAATTAAAAAATAAAAAT
Found at i:8824425 original size:15 final size:15
Alignment explanation
Indices: 8824407--8824448 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
8824397 GCACACTTTA
8824407 TTTATGTATTTA-TAT
1 TTTAT-TATTTATTAT
8824422 TTTATTTATTTATTAT
1 TTTA-TTATTTATTAT
8824438 TATTATTATTT
1 T-TTATTATTT
8824449 TAAAATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 10 0.42
16 11 0.46
17 3 0.12
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTATTTATTAT
Found at i:8824425 original size:19 final size:19
Alignment explanation
Indices: 8824403--8824448 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
8824393 GTATGCACAC
8824403 TTTATTTATGTATT-TATAT
1 TTTATTTATGTATTAT-TAT
*
8824422 TTTATTTATTTATTATTAT
1 TTTATTTATGTATTATTAT
8824441 TATTATTT
1 T-TTATTT
8824449 TAAAATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (19 bp):
TTTATTTATGTATTATTAT
Found at i:8824484 original size:34 final size:33
Alignment explanation
Indices: 8824420--8824491 Score: 92
Period size: 34 Copynumber: 2.2 Consensus size: 33
8824410 ATGTATTTAT
*
8824420 ATTTTATTTATTTATTATTATTATTATTTTAAA
1 ATTTTATTTATTCATTATTATTATTATTTTAAA
* *
8824453 ATTTTATTTATCATCATT-TTATTTTTTTTTTAAA
1 ATTTTATTTAT--TCATTATTATTATTATTTTAAA
8824487 ATTTT
1 ATTTT
8824492 GATTATTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 11 0.32
34 19 0.56
35 4 0.12
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (33 bp):
ATTTTATTTATTCATTATTATTATTATTTTAAA
Found at i:8832474 original size:19 final size:16
Alignment explanation
Indices: 8832435--8832467 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
8832425 TCAATAAATC
8832435 AGATGATATATTATTA
1 AGATGATATATTATTA
8832451 AGATGATATATTATTA
1 AGATGATATATTATTA
8832467 A
1 A
8832468 TGAGATGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (16 bp):
AGATGATATATTATTA
Found at i:8844125 original size:357 final size:356
Alignment explanation
Indices: 8843359--8845323 Score: 2110
Period size: 358 Copynumber: 5.5 Consensus size: 356
8843349 TATAACAATT
* * * * * ** *
8843359 TATTGAAGGTGGTTTATAATAAAAGACACATTTAATAATCCATGAAAATTTTTTGAGGAAAATTA
1 TATTAAAGGTGGTTTATAATAAAAGACGCCTTTAAAAATCGACAAAAATTTTTTGAGAAAAATTA
* * * * * *
8843424 TTAAAGGCATTATTTTTTGCAACCGCTTTCAGTTATTATTTACAAACTATGATAGGAATTATTAA
66 TTAAAGGCGTTGTTTTCTGCAACCGCCTTCAGTTATTATCTACAAACTATGATAGAAATTATTAA
* * ** * * * * *
8843489 AGGCATATTTCTTGGATGTATACCTTCAATAATAGTATTAGAATTTGTGTGGC-GATATATAGAA
131 AGGCATCTATCTTAAATATATGCCTTCAATAATAGTGTTAGAATTTATGTGACTG-TATATAGAA
* * * *** *
8843553 GGTATTTGATAGTAGAAGACGTC-TTGAATAATT-TCCAAAATATTTAGTGGAAAAATTTTGAAA
195 GGTATTTGACAGTAGAAGATG-CATTTAATAATTCT-CAAAATA-TTAAAAGAAAAATTTTGAAG
* ** * * *
8843616 GTGTC---TATTAACAAACACCTTCAGTAATGGATTACTAAGTTTAAAGATATATTGAATGTGCC
257 GCGTCTGTTATTAACAAATGCCTTCACTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCC
* *
8843678 TTTTC-ATATAAACACCTTCCATTACCATTGTGGTA
322 TTTTCTA-ATAAACGCCTTCCATTACCATCGTGGTA
*** * * *
8843713 TATTGAAA-ACAGTTTATAATAAAAGACGCCTATAAAAAT-TAGCAAAAAATTTTTGAGAAAAAT
1 TATT-AAAGGTGGTTTATAATAAAAGACGCCTTTAAAAATCGA-CAAAAATTTTTTGAGAAAAAT
* * * * * *
8843776 TATTAAAGGTGTTGTTTTCTGCAATCGCCTTCAGCTATTATCTAAAAATTGTGATAGAAATTATT
64 TATTAAAGGCGTTGTTTTCTGCAACCGCCTTCAGTTATTATCTACAAACTATGATAGAAATTATT
** *
8843841 AAAGGTGTCTATCTTAAATATATGCCTTCAATAACAGTGTTAGAATTTATGTGACTGTATATAGA
129 AAAGGCATCTATCTTAAATATATGCCTTCAATAATAGTGTTAGAATTTATGTGACTGTATATAGA
* *
8843906 AGGCATTTGACAGTAGAAGATGCATTTAATAATTCTCAAAATATTAAAAGAATAAATTTTTAAGG
194 AGGTATTTGACAGTAGAAGATGCATTTAATAATTCTCAAAATATTAAAAGAA-AAATTTTGAAGG
* **
8843971 CGTCTGTTATTAACAAATGCCTTCACTAATGGATTACTAAATTTAAAGGTATATTGAAGGCACCT
258 CGTCTGTTATTAACAAATGCCTTCACTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCT
* *
8844036 TTTCTAATAAATGCCTTCCATTACCAT-TTCGGTA
323 TTTCTAATAAACGCCTTCCATTACCATCGT-GGTA
* *
8844070 TATTAAAGGTGGTTTATAATAAAAGATGCTTTTAAAAATCGACAAAAATTTTTTGAGAAAAAATT
1 TATTAAAGGTGGTTTATAATAAAAGACGCCTTTAAAAATCGACAAAAATTTTTTGAG-AAAAATT
* *
8844135 ATTGAAGGCGTTGTTTTCTGCAACCGCCTTTAGTTATTATCTACAAACTATGATA-AGAATTATT
65 ATTAAAGGCGTTGTTTTCTGCAACCGCCTTCAGTTATTATCTACAAACTATGATAGA-AATTATT
* * * ** * *
8844199 AAATGCATCTATCTTAAATATACGCCTTCAATAATAGTATTAGAATTGGTGTGGCGGTATATAGA
129 AAAGGCATCTATCTTAAATATATGCCTTCAATAATAGTGTTAGAATTTATGTGACTGTATATAGA
* * * * **
8844264 AGGTATTTGACAGTAAAAAATACATTTAATAATTCAT-AAAATATTTAGTGAGAAAATTTTGAAG
194 AGGTATTTGACAGTAGAAGATGCATTTAATAATTC-TCAAAATATTAAAAGA-AAAATTTTGAAG
*
8844328 GCGTCTGTTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCC
257 GCGTCTGTTATTAACAAATGCCTTCACTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCC
*
8844393 TTTTCTAATAAACGCCTTCCATTATCATCGTGGTA
322 TTTTCTAATAAACGCCTTCCATTACCATCGTGGTA
* * * * * * *
8844428 TATTGAATGCGGTTTATAATAAAAGACGCCTTTAATAATCCACGAAAATTTTTTTAGAAAAATTA
1 TATTAAAGGTGGTTTATAATAAAAGACGCCTTTAAAAATCGACAAAAATTTTTTGAGAAAAATTA
* * * *
8844493 TTGAAGGTGTTGTTTTCTGCAACCGCCTTAAGTTATTATCTATAAACTATGATA-AGAATTATTA
66 TTAAAGGCGTTGTTTTCTGCAACCGCCTTCAGTTATTATCTACAAACTATGATAGA-AATTATTA
* ** * * * **
8844557 AAGGCATCTTTCTTGGATGTATGCCTTCAATAAAAGTGTTAGAATTTATGTGTCAATATATAGAA
130 AAGGCATCTATCTTAAATATATGCCTTCAATAATAGTGTTAGAATTTATGTGACTGTATATAGAA
* * * * * *
8844622 GGCATTTTACAGTAGAAAACGCCTTTAATAATTCTCAAAATATTAAAAGAATAAATTTTTTAAGG
195 GGTATTTGACAGTAGAAGATGCATTTAATAATTCTCAAAATATTAAAAGAA-AAA-TTTTGAAGG
* * * ** * *
8844687 CATATGTTATTAACAAACGTTTTCACTAATGGATTACTAAGTTTAAAGGTATATTGAATGTGTCT
258 CGTCTGTTATTAACAAATGCCTTCACTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCT
*
8844752 TTTCTAATAAACACCTTCCATTACCATCGTGGTA
323 TTTCTAATAAACGCCTTCCATTACCATCGTGGTA
* * * *
8844786 TATTAAAGGCT-GTTTATAATAAAAGACGCCTTTAAAAATAGATAAAAAATTTTTGAAAAAAATT
1 TATTAAAGG-TGGTTTATAATAAAAGACGCCTTTAAAAATCGACAAAAATTTTTTGAGAAAAATT
* * * * ** *
8844850 ATTGAAGGCATTTTTTTTTGCAACTACCTTCAGTTATTATCTACAAACTGTGATAGAAATTATTA
65 ATTAAAGGCGTTGTTTTCTGCAACCGCCTTCAGTTATTATCTACAAACTATGATAGAAATTATTA
** * * * * *
8844915 AAAACGTCTATGTTAAATATACGCCTTCAATAACAGTGTTAAAATTTATGTGACTGTATATAGAA
130 AAGGCATCTATCTTAAATATATGCCTTCAATAATAGTGTTAGAATTTATGTGACTGTATATAGAA
* * * * * ***
8844980 AGTATTTGACAGTAAAAGATACCTTTAATAATTCTTAAAATATTTAGTGGAAAAATTTTGAAGGC
195 GGTATTTGACAGTAGAAGATGCATTTAATAATTCTCAAAATA-TTAAAAGAAAAATTTTGAAGGC
* * ***
8845045 GTCTATTATTAACAAATGCCTTCACTAATAGATTACTAAGTTTAAAGGTATATTGAAGGCATCTT
259 GTCTGTTATTAACAAATGCCTTCACTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTT
* * *
8845110 TTCTAATAAACGACTTTCATTACCATCATGGTA
324 TTCTAATAAACGCCTTCCATTACCATCGTGGTA
* * * * * * *
8845143 TATTAAAGG-CGTGTCATAATAAAAGATGCCTTTAATAATTTGAAAAAAATGTTTT-AGAAAAAT
1 TATTAAAGGTGGT-TTATAATAAAAGACGCCTTTAA-AAATCGACAAAAATTTTTTGAGAAAAAT
* * * * * * * * *
8845206 TTTTGAAA-GCGTTGTTTTCTGTAATCGCCTTTAGTAATTAACTATAAACTGTGATATAAATTAT
64 TATT-AAAGGCGTTGTTTTCTGCAACCGCCTTCAGTTATTATCTACAAACTATGATAGAAATTAT
* * * * * *
8845270 TAAAGGCGTCTTTGTTAGATATATGCCTTCAATAATAGTGTTAAAATTTGTGTG
128 TAAAGGCATCTATCTTAAATATATGCCTTCAATAATAGTGTTAGAATTTATGTG
8845324 GTGATATGTT
Statistics
Matches: 1350, Mismatches: 233, Indels: 53
0.83 0.14 0.03
Matches are distributed among these distances:
353 8 0.01
354 197 0.15
355 4 0.00
356 8 0.01
357 507 0.38
358 616 0.46
359 10 0.01
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (356 bp):
TATTAAAGGTGGTTTATAATAAAAGACGCCTTTAAAAATCGACAAAAATTTTTTGAGAAAAATTA
TTAAAGGCGTTGTTTTCTGCAACCGCCTTCAGTTATTATCTACAAACTATGATAGAAATTATTAA
AGGCATCTATCTTAAATATATGCCTTCAATAATAGTGTTAGAATTTATGTGACTGTATATAGAAG
GTATTTGACAGTAGAAGATGCATTTAATAATTCTCAAAATATTAAAAGAAAAATTTTGAAGGCGT
CTGTTATTAACAAATGCCTTCACTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTTTT
CTAATAAACGCCTTCCATTACCATCGTGGTA
Found at i:8844848 original size:715 final size:709
Alignment explanation
Indices: 8843359--8845323 Score: 2471
Period size: 715 Copynumber: 2.8 Consensus size: 709
8843349 TATAACAATT
* * * * * **
8843359 TATTGAAGGTGGTTTATAATAAAAGACACATTTAATAATCCATGAAAATTTTTTGAGGAAAATTA
1 TATTAAAGGTGGTTTATAATAAAAGACGCATTTAAAAATCGATAAAAATTTTTTGAAAAAAATTA
* * *
8843424 TTAAAGGCATTATTTTTTGCAACCG-CTTTCAGTTATTATTTACAAACTATGATAGGAATTATTA
66 TTGAAGGCATTATTTTTTGCAACCGCCTTT-AGTTATTATCTACAAACTATGATAAGAATTATTA
* * * ** * ** *
8843488 AAGGCATATTTCTTGGATGTATACCTTCAATAATAGTATTAGAATTTGTGTGGCGATATATAGAA
130 AAAGCATCTATCTTAAATATACGCCTTCAATAATAGTATTAGAATTTGTGTGGCGGTATATAGAA
* ** * * *
8843553 GGTATTTGATAGTAGAAGACGT-CTTGAATAATTTCCAAAATATTTAGTGGAAAAATTTTGAAAG
195 GGTATTTGACAGTA-AA-AAATACTTTAATAA-TTCTAAAATATTTAGTGGAAAAATTTTGAAGG
* ** * *
8843617 TGTC--TATTAACAAACACCTTCAGTAATGGATTACTAAGTTTAAAGATATATTGAATGTGCCTT
257 CGTCTTTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTT
* * *
8843680 TTC-ATATAAACACCTTCCATTACCATTGTGGTATATTGAAAACAGTTTATAATAAAAGACGCCT
322 TTCTA-ATAAACGCCTTCCATTACCATCGTGGTATATTGAAAGC-GTTTATAATAAAAGACGCCT
* * * * * *
8843744 ATAAAAATTAGCAAAAAATTTTTGAGAAAAATTATTAAAGGTGTTGTTTTCTGCAATCGCCTTCA
385 TTAATAATCA-CAAAAAATTTTTTAGAAAAATTATTGAAGGTGTTGTTTTCTGCAATCGCCTTAA
* * * * * *
8843809 GCTATTATCTAAAAATTGTGAT-AGAAATTATTAAAGGTGTCTATCTTAAATATATGCCTTCAAT
449 GTTATTATCTATAAACTGTGATAAG-AATTATTAAAGGCGTCTTTCTTAGATATATGCCTTCAAT
* ** * *
8843873 AACAGTGTTAGAATTTATGTGACTGTATATAGAAGGCATTTGACAGTAGAAGATGCATTTAATAA
513 AAAAGTGTTAGAATTTATGTGACAATATATAGAAGGCATTTGACAGTAGAAAACGCATTTAATAA
* * *
8843938 TTCTCAAAATATTAAAAGAATAAATTTTTAAGGCGTCTGTTATTAACAAATGCCTTCACTAATGG
578 TTCTCAAAATATTAAAAGAATAAATTTTTAAGGCATATGTTATTAACAAACGCCTTCACTAATGG
** *
8844003 ATTACTAAATTTAAAGGTATATTGAAGGCACCTTTTCTAATAAATGCCTTCCATTACCATTTCGG
643 ATTACTAAATTTAAAGGTATATTGAAGGCACCTTTTCTAATAAACACCTTCCATTACCATGTCGG
8844068 TA
708 TA
* * *
8844070 TATTAAAGGTGGTTTATAATAAAAGATGCTTTTAAAAATCGACAAAAATTTTTTGAGAAAAAATT
1 TATTAAAGGTGGTTTATAATAAAAGACGCATTTAAAAATCGATAAAAATTTTTTGA-AAAAAATT
* * *
8844135 ATTGAAGGCGTTGTTTTCTGCAACCGCCTTTAGTTATTATCTACAAACTATGATAAGAATTATTA
65 ATTGAAGGCATTATTTTTTGCAACCGCCTTTAGTTATTATCTACAAACTATGATAAGAATTATTA
* *
8844200 AATGCATCTATCTTAAATATACGCCTTCAATAATAGTATTAGAATTGGTGTGGCGGTATATAGAA
130 AAAGCATCTATCTTAAATATACGCCTTCAATAATAGTATTAGAATTTGTGTGGCGGTATATAGAA
8844265 GGTATTTGACAGTAAAAAATACATTTAATAATTCATAAAATATTTAGT-GAGAAAATTTTGAAGG
195 GGTATTTGACAGTAAAAAATAC-TTTAATAATTC-TAAAATATTTAGTGGA-AAAATTTTGAAGG
8844329 CGTCTGTTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCT
257 CGTCT-TTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCT
* *
8844394 TTTCTAATAAACGCCTTCCATTATCATCGTGGTATATTGAATGCGGTTTATAATAAAAGACGCCT
321 TTTCTAATAAACGCCTTCCATTACCATCGTGGTATATTGAAAGC-GTTTATAATAAAAGACGCCT
* * *
8844459 TTAATAATCCACGAAAATTTTTTTAGAAAAATTATTGAAGGTGTTGTTTTCTGCAACCGCCTTAA
385 TTAATAAT-CACAAAAAATTTTTTAGAAAAATTATTGAAGGTGTTGTTTTCTGCAATCGCCTTAA
* * * *
8844524 GTTATTATCTATAAACTATGATAAGAATTATTAAAGGCATCTTTCTTGGATGTATGCCTTCAATA
449 GTTATTATCTATAAACTGTGATAAGAATTATTAAAGGCGTCTTTCTTAGATATATGCCTTCAATA
* * *
8844589 AAAGTGTTAGAATTTATGTGTCAATATATAGAAGGCATTTTACAGTAGAAAACGCCTTTAATAAT
514 AAAGTGTTAGAATTTATGTGACAATATATAGAAGGCATTTGACAGTAGAAAACGCATTTAATAAT
**
8844654 TCTCAAAATATTAAAAGAATAAATTTTTTAAGGCATATGTTATTAACAAACGTTTTCACTAATGG
579 TCTCAAAATATTAAAAGAATAAA-TTTTTAAGGCATATGTTATTAACAAACGCCTTCACTAATGG
* * ***
8844719 ATTACTAAGTTTAAAGGTATATTGAATGTGTCTTTTCTAATAAACACCTTCCATTACCATCGT-G
643 ATTACTAAATTTAAAGGTATATTGAAGGCACCTTTTCTAATAAACACCTTCCATTACCAT-GTCG
8844783 GTA
707 GTA
* * *
8844786 TATTAAAGGCT-GTTTATAATAAAAGACGCCTTTAAAAATAGATAAAAAATTTTTGAAAAAAATT
1 TATTAAAGG-TGGTTTATAATAAAAGACGCATTTAAAAATCGATAAAAATTTTTTGAAAAAAATT
* ** * *
8844850 ATTGAAGGCATTTTTTTTTGCAACTACCTTCAGTTATTATCTACAAACTGTGAT-AGAAATTATT
65 ATTGAAGGCATTATTTTTTGCAACCGCCTTTAGTTATTATCTACAAACTATGATAAG-AATTATT
* * * * * * * * *
8844914 AAAAACGTCTATGTTAAATATACGCCTTCAATAACAGTGTTAAAATTTATGTGACTGTATATAGA
129 AAAAGCATCTATCTTAAATATACGCCTTCAATAATAGTATTAGAATTTGTGTGGCGGTATATAGA
* *
8844979 AAGTATTTGACAGTAAAAGATACCTTTAATAATTCTTAAAATATTTAGTGGAAAAATTTTGAAGG
194 AGGTATTTGACAGTAAAAAATA-CTTTAATAATTC-TAAAATATTTAGTGGAAAAATTTTGAAGG
* * ***
8845044 CGTCTATTATTAACAAATGCCTTCACTAATAGATTACTAAGTTTAAAGGTATATTGAAGGCATCT
257 CGTCT-TTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCT
* * * * *
8845109 TTTCTAATAAACGACTTTCATTACCATCATGGTATATT-AAAGGCGTGTCATAATAAAAGATGCC
321 TTTCTAATAAACGCCTTCCATTACCATCGTGGTATATTGAAA-GCGT-TTATAATAAAAGACGCC
* * * * * *
8845173 TTTAATAATTTGA-AAAAAATGTTTTAGAAAAATTTTTGAAAGCGTTGTTTTCTGTAATCGCCTT
384 TTTAATAA--TCACAAAAAATTTTTTAGAAAAATTATTGAAGGTGTTGTTTTCTGCAATCGCCTT
* * * *
8845237 TAGTAATTAACTATAAACTGTGATATA-AATTATTAAAGGCGTCTTTGTTAGATATATGCCTTCA
447 AAGTTATTATCTATAAACTGTGATA-AGAATTATTAAAGGCGTCTTTCTTAGATATATGCCTTCA
* * *
8845301 ATAATAGTGTTAAAATTTGTGTG
511 ATAAAAGTGTTAGAATTTATGTG
8845324 GTGATATGTT
Statistics
Matches: 1089, Mismatches: 142, Indels: 42
0.86 0.11 0.03
Matches are distributed among these distances:
710 2 0.00
711 56 0.05
712 162 0.15
713 4 0.00
714 6 0.01
715 705 0.65
716 151 0.14
717 3 0.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (709 bp):
TATTAAAGGTGGTTTATAATAAAAGACGCATTTAAAAATCGATAAAAATTTTTTGAAAAAAATTA
TTGAAGGCATTATTTTTTGCAACCGCCTTTAGTTATTATCTACAAACTATGATAAGAATTATTAA
AAGCATCTATCTTAAATATACGCCTTCAATAATAGTATTAGAATTTGTGTGGCGGTATATAGAAG
GTATTTGACAGTAAAAAATACTTTAATAATTCTAAAATATTTAGTGGAAAAATTTTGAAGGCGTC
TTTATTAACAAATGCCTTCAGTAATGGATTACTAAGTTTAAAGGTATATTGAAGGTGCCTTTTCT
AATAAACGCCTTCCATTACCATCGTGGTATATTGAAAGCGTTTATAATAAAAGACGCCTTTAATA
ATCACAAAAAATTTTTTAGAAAAATTATTGAAGGTGTTGTTTTCTGCAATCGCCTTAAGTTATTA
TCTATAAACTGTGATAAGAATTATTAAAGGCGTCTTTCTTAGATATATGCCTTCAATAAAAGTGT
TAGAATTTATGTGACAATATATAGAAGGCATTTGACAGTAGAAAACGCATTTAATAATTCTCAAA
ATATTAAAAGAATAAATTTTTAAGGCATATGTTATTAACAAACGCCTTCACTAATGGATTACTAA
ATTTAAAGGTATATTGAAGGCACCTTTTCTAATAAACACCTTCCATTACCATGTCGGTA
Found at i:8853178 original size:22 final size:22
Alignment explanation
Indices: 8853136--8853178 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
8853126 TGGCATTAAT
* *
8853136 AAACGCTGCTAAACGATAAAAA
1 AAACGCCGCTAAACAATAAAAA
*
8853158 AAACGCCGCTAAA-AATCAAAA
1 AAACGCCGCTAAACAATAAAAA
8853179 TCCTTGTAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.56, C:0.21, G:0.12, T:0.12
Consensus pattern (22 bp):
AAACGCCGCTAAACAATAAAAA
Found at i:8863593 original size:16 final size:16
Alignment explanation
Indices: 8863572--8863602 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8863562 GAAGAAAAAG
*
8863572 CATTTATAATTCAACA
1 CATTTATAACTCAACA
8863588 CATTTATAACTCAAC
1 CATTTATAACTCAAC
8863603 TATTTTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (16 bp):
CATTTATAACTCAACA
Found at i:8864284 original size:18 final size:18
Alignment explanation
Indices: 8864263--8864307 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
8864253 TTCTCTCTCT
8864263 CCTTTTC-CCATTCCTTTG
1 CCTTTTCTCC-TTCCTTTG
* *
8864281 CCTTGTCTCCTTCCTTTT
1 CCTTTTCTCCTTCCTTTG
8864299 CCTTTTCTC
1 CCTTTTCTC
8864308 TATCCCTATC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.02, C:0.40, G:0.04, T:0.53
Consensus pattern (18 bp):
CCTTTTCTCCTTCCTTTG
Found at i:8867211 original size:12 final size:12
Alignment explanation
Indices: 8867196--8867230 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
8867186 TTTAAATTTG
8867196 TTTAAAAATAAT
1 TTTAAAAATAAT
8867208 TTTAAAAATAAT
1 TTTAAAAATAAT
* *
8867220 TATATAAATAA
1 TTTAAAAATAA
8867231 ATTAAGTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
TTTAAAAATAAT
Found at i:8869852 original size:27 final size:28
Alignment explanation
Indices: 8869813--8869875 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 28
8869803 TGTATTTAAA
* *
8869813 AAAATT-TTAAAATTATTTAACA-TTTAT
1 AAAATTATTAAAATAATTGAA-ATTTTAT
8869840 AAAATTATT-AAATAATTGAAATTTTAT
1 AAAATTATTAAAATAATTGAAATTTTAT
*
8869867 TAAATTATT
1 AAAATTATT
8869876 TTCAGGTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 1 0.03
27 28 0.90
28 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (28 bp):
AAAATTATTAAAATAATTGAAATTTTAT
Found at i:8882001 original size:24 final size:24
Alignment explanation
Indices: 8881974--8882020 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8881964 AAAGATTTAT
8881974 ATTTAATACACTGTCAGTATATAG
1 ATTTAATACACTGTCAGTATATAG
* * * *
8881998 ATTTTATATATTGTTAGTATATA
1 ATTTAATACACTGTCAGTATATA
8882021 AATGAGGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.47
Consensus pattern (24 bp):
ATTTAATACACTGTCAGTATATAG
Found at i:8882488 original size:13 final size:13
Alignment explanation
Indices: 8882472--8882496 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8882462 TTTAAAAAAG
8882472 ATATTTATTTTAT
1 ATATTTATTTTAT
8882485 ATATTTATTTTA
1 ATATTTATTTTA
8882497 AAAATTAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
ATATTTATTTTAT
Found at i:8883736 original size:25 final size:25
Alignment explanation
Indices: 8883698--8883746 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
8883688 TTGCTAAGAC
*
8883698 ATGGCCCCGCTGGCTTAACAACTTT
1 ATGGCCCCGCTGGCATAACAACTTT
* *
8883723 ATGGCCTCGTTGGCATAACAACTT
1 ATGGCCCCGCTGGCATAACAACTT
8883747 CTTTTTATTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (25 bp):
ATGGCCCCGCTGGCATAACAACTTT
Found at i:8885269 original size:19 final size:20
Alignment explanation
Indices: 8885245--8885283 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
8885235 ATCATGTTTA
*
8885245 AATAGAGT-TCATTAATTTT
1 AATAGAGTGTCATCAATTTT
*
8885264 AATAGATTGTCATCAATTTT
1 AATAGAGTGTCATCAATTTT
8885284 TTTTTTTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.36, C:0.08, G:0.10, T:0.46
Consensus pattern (20 bp):
AATAGAGTGTCATCAATTTT
Found at i:8892636 original size:32 final size:32
Alignment explanation
Indices: 8892600--8892667 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
8892590 GTTATTTTCT
* * *
8892600 TGTTCATTCATGTATTATACTAATGAATAGGA
1 TGTTCATTCATGCATTACACTAATGAATAGAA
8892632 TGTTCATTCATGCATTACACTAATGAATAGAA
1 TGTTCATTCATGCATTACACTAATGAATAGAA
8892664 TGTT
1 TGTT
8892668 TATAAAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.40
Consensus pattern (32 bp):
TGTTCATTCATGCATTACACTAATGAATAGAA
Found at i:8892800 original size:68 final size:68
Alignment explanation
Indices: 8892653--8892779 Score: 184
Period size: 68 Copynumber: 1.9 Consensus size: 68
8892643 GCATTACACT
* ** *
8892653 AATGAAT-AGAATGTTTATAAAATTATTTTTGTTGGTATATAAATGGATGATTACCTTCTATATA
1 AATGAATAAG-ATGTTTATAAAATTATTTCTACTGGTATATAAATGGATGATTAACTTCTATATA
8892717 TATG
65 TATG
* *
8892721 AATGAATAAGATGTTTATAAAGTTATTTCTACTGGTATATTAATGGATGATTAACTTCT
1 AATGAATAAGATGTTTATAAAATTATTTCTACTGGTATATAAATGGATGATTAACTTCT
8892780 TACCTTTTGT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
68 50 0.96
69 2 0.04
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.43
Consensus pattern (68 bp):
AATGAATAAGATGTTTATAAAATTATTTCTACTGGTATATAAATGGATGATTAACTTCTATATAT
ATG
Found at i:8893325 original size:15 final size:15
Alignment explanation
Indices: 8893305--8893339 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8893295 GGTGTAAGTC
*
8893305 TTTATCTATGTTTAT
1 TTTATCGATGTTTAT
*
8893320 TTTATCGATGTTTGT
1 TTTATCGATGTTTAT
8893335 TTTAT
1 TTTAT
8893340 TAGACTTGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.11, T:0.66
Consensus pattern (15 bp):
TTTATCGATGTTTAT
Found at i:8894112 original size:18 final size:18
Alignment explanation
Indices: 8894086--8894121 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
8894076 AGATCTATAC
8894086 CGATAAAAAATATATTGA
1 CGATAAAAAATATATTGA
* *
8894104 CGATTAAAAATTTATTGA
1 CGATAAAAAATATATTGA
8894122 AATACATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.33
Consensus pattern (18 bp):
CGATAAAAAATATATTGA
Found at i:8895145 original size:30 final size:30
Alignment explanation
Indices: 8895074--8895145 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 30
8895064 AAAAAATTAT
*
8895074 TTAAAATTTTAA-CATTTTATTATAATTAA
1 TTAAAATTTTAATCATTTTATTATAACTAA
* * *
8895103 TCAAATTTTTAATC-TTTTATTTTAAACTAA
1 TTAAAATTTTAATCATTTTATTAT-AACTAA
*
8895133 TTAAACTTTTAAT
1 TTAAAATTTTAAT
8895146 TAGATGAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
29 18 0.51
30 17 0.49
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (30 bp):
TTAAAATTTTAATCATTTTATTATAACTAA
Found at i:8900528 original size:21 final size:25
Alignment explanation
Indices: 8900499--8900546 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 25
8900489 AGCATGGTGA
*
8900499 ATCTGTTTC-T-TGGTAAAT-TAAT
1 ATCTGTTTCATGTGGAAAATATAAT
8900521 ATCT-TTTCATGTGGAAAATATAAT
1 ATCTGTTTCATGTGGAAAATATAAT
8900545 AT
1 AT
8900547 TGTGTCTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
21 4 0.18
22 5 0.23
23 7 0.32
24 6 0.27
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.46
Consensus pattern (25 bp):
ATCTGTTTCATGTGGAAAATATAAT
Found at i:8908505 original size:109 final size:109
Alignment explanation
Indices: 8908314--8908519 Score: 331
Period size: 109 Copynumber: 1.9 Consensus size: 109
8908304 ACATATAGGC
* * *
8908314 AGAATTTAAAAATAACTCTTTTCACCTAAGATTTATCACATCATTTCTTAAAAATGAAAATAACA
1 AGAATTTAAAAATAACTATTTTCACCTAAGATTTATCACATCATTCCTTAAAAATGAAAAGAACA
8908379 TTCTTTGTAGATGATAATTGTTAGTGACTCTCAAATATCTAAAT
66 TTCTTTGTAGATGATAATTGTTAGTGACTCTCAAATATCTAAAT
* ** * *
8908423 AGAATTTAAAGATAACTATTTTTGCCTTATATTTATCACATCATTCCTTAAAAATGAAAAGAACA
1 AGAATTTAAAAATAACTATTTTCACCTAAGATTTATCACATCATTCCTTAAAAATGAAAAGAACA
*
8908488 TTCTTTGTAGCTGATAATTGTTAGTGACTCTC
66 TTCTTTGTAGATGATAATTGTTAGTGACTCTC
8908520 CAACATTTAG
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
109 88 1.00
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (109 bp):
AGAATTTAAAAATAACTATTTTCACCTAAGATTTATCACATCATTCCTTAAAAATGAAAAGAACA
TTCTTTGTAGATGATAATTGTTAGTGACTCTCAAATATCTAAAT
Found at i:8910695 original size:26 final size:26
Alignment explanation
Indices: 8910646--8910695 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
8910636 TTTAATAAAT
* *
8910646 TAAATAAATAAAATTAAAACAAAAGC
1 TAAAAAAATAAAAATAAAACAAAAGC
8910672 TAAAAAAATAAAAAATAAAA-AAAA
1 TAAAAAAAT-AAAAATAAAACAAAA
8910696 TGAACCCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 12 0.57
27 9 0.43
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (26 bp):
TAAAAAAATAAAAATAAAACAAAAGC
Found at i:8912023 original size:26 final size:26
Alignment explanation
Indices: 8911974--8912022 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
8911964 AAACATTAAA
*
8911974 TTAAAGTTTAGATATAATGATTTTCT
1 TTAAAGTTTAAATATAATGATTTTCT
8912000 TTAAAGTTTAAATATAAT-ATTTT
1 TTAAAGTTTAAATATAATGATTTT
8912023 TTATATATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (26 bp):
TTAAAGTTTAAATATAATGATTTTCT
Found at i:8912030 original size:16 final size:16
Alignment explanation
Indices: 8912006--8912039 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8911996 TTCTTTAAAG
8912006 TTTAAATATAATATTT
1 TTTAAATATAATATTT
* *
8912022 TTTATATATAATGTTT
1 TTTAAATATAATATTT
8912038 TT
1 TT
8912040 AATGATTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTAAATATAATATTT
Found at i:8917417 original size:59 final size:59
Alignment explanation
Indices: 8917221--8917642 Score: 408
Period size: 59 Copynumber: 7.1 Consensus size: 59
8917211 TTTTGTGCAG
* ** * * * *
8917221 GAAAAATTGATACTTTCAATTTTTTTTCAAAAAAAAAAACTTTATTGAAAATTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCTC---AAAAATATCTTTTTTGAAATTTTATTTTTAA
* * * **
8917283 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAACTTTAATTTCGAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTTTG-AAA-TTTTATTTTTAA
*
8917344 G-AAAATTGATACTTTCAACTTTTCCTCAAAAAGATCTTTTTTGAAATTTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTTTGAAATTTTATTTTTAA
* * * * **
8917402 GAAAAATTGATACTTTCATCTTTTCC-CAAAAAAAAT-TTTTTTGAAAACTTTAATTTCGA
1 GAAAAATTGATACTTTCAACTTTTCCTC-AAAAATATCTTTTTTG-AAATTTTATTTTTAA
* * **
8917461 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAT-CCATTTTTGAAAACTTATTTTTAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTTTGAAATTTTATTTTTAA
* * * ** *
8917519 GGAAAATTGATACTTTCAACTTTT-TTCCAAAAATATTATTTTTTTAGAAAGCTTATTTTCAA
1 GAAAAATTGATACTTTCAACTTTTCCT-CAAAAATA-T-CTTTTTT-GAAATTTTATTTTTAA
* * *
8917581 GAAAAATTGATACTTTCAATTTTTCCTCAAAAATATTTTTTTTG-AATTTTA-TTTAAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTTTGAAATTTTATTTTTAA
8917638 GAAAA
1 GAAAA
8917643 TAAAATAATA
Statistics
Matches: 301, Mismatches: 46, Indels: 31
0.80 0.12 0.08
Matches are distributed among these distances:
57 11 0.04
58 63 0.21
59 93 0.31
60 50 0.17
61 15 0.05
62 68 0.23
63 1 0.00
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (59 bp):
GAAAAATTGATACTTTCAACTTTTCCTCAAAAATATCTTTTTTGAAATTTTATTTTTAA
Found at i:8917467 original size:118 final size:117
Alignment explanation
Indices: 8917221--8917642 Score: 503
Period size: 118 Copynumber: 3.5 Consensus size: 117
8917211 TTTTGTGCAG
* ** * *
8917221 GAAAAATTGATACTTTCAATTTTTTTTCAAAAAAAAAAACTTTATTGAAAATTTATTTTTAAGAA
1 GAAAAATTGATACTTTCAACTTTTCCTC----AAAAAATCTTTTTTGAAAATTTATTTTTAAGAA
* *
8917286 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAAACTTTAATTTCGA
62 AAATTGATACTTTCAACTTTT-CCCAAAAAAAATTTTTTTGAAAACTTTAATTTCGA
*
8917343 -AGAAAATTGATACTTTCAACTTTTCCTCAAAAAGATCTTTTTTGAAATTTTATTTTTAAGAAAA
1 GA-AAAATTGATACTTTCAACTTTTCCTCAAAAA-ATCTTTTTTGAAAATTTATTTTTAAGAAAA
*
8917407 ATTGATACTTTCATCTTTTCCCAAAAAAAATTTTTTTGAAAACTTTAATTTCGA
64 ATTGATACTTTCAACTTTTCCCAAAAAAAATTTTTTTGAAAACTTTAATTTCGA
* * *
8917461 GAAAAATTGATACTTTCAACTTTTCCTC-AAAAATCCATTTTTGAAAACTTATTTTTAAGGAAAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAAT-CTTTTTTGAAAATTTATTTTTAAGAAAAA
* * * * *
8917525 TTGATACTTTCAACTTTTTTCCAAAAATATTATTTTTTTAGAAAGC-TTATTTTCAA
65 TTGATACTTTCAAC-TTTTCCCAAAAA-A-AATTTTTTT-GAAAACTTTAATTTCGA
* * * *
8917581 GAAAAATTGATACTTTCAATTTTTCCTCAAAAATATTTTTTTTG-AATTTTA-TTTAAAGAAAA
1 GAAAAATTGATACTTTCAACTTTTCCTCAAAAA-ATCTTTTTTGAAAATTTATTTTTAAGAAAA
8917643 TAAAATAATA
Statistics
Matches: 264, Mismatches: 26, Indels: 23
0.84 0.08 0.07
Matches are distributed among these distances:
116 2 0.01
117 42 0.16
118 75 0.28
119 56 0.21
120 48 0.18
121 16 0.06
122 25 0.09
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (117 bp):
GAAAAATTGATACTTTCAACTTTTCCTCAAAAAATCTTTTTTGAAAATTTATTTTTAAGAAAAAT
TGATACTTTCAACTTTTCCCAAAAAAAATTTTTTTGAAAACTTTAATTTCGA
Found at i:8917647 original size:5 final size:5
Alignment explanation
Indices: 8917639--8917727 Score: 87
Period size: 5 Copynumber: 17.8 Consensus size: 5
8917629 TTATTTAAAG
*
8917639 AAAAT AAAAT --AAT AAAAT AAAAT AAAAAT GAAAAT AAAAAT AAGGA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT -AAAAT AA-AAT
* *
8917685 GAAAT AAAAT AATA- AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
8917728 AATATTAAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
3 3 0.04
4 4 0.06
5 47 0.67
6 16 0.23
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:8917672 original size:6 final size:6
Alignment explanation
Indices: 8917639--8917728 Score: 59
Period size: 6 Copynumber: 15.7 Consensus size: 6
8917629 TTATTTAAAG
* ** *
8917639 AAAAT- AAAATA ATAAA-A TAAAATA AAAATG AAAATA AAAATA AGGAGA
1 AAAATA AAAATA A-AAATA -AAAATA AAAATA AAAATA AAAATA AAAATA
*
8917687 AATAA-A ATAATA AAAAT- AAAAT- AAAAT- AAAAT- AAAATA AAAA
1 AA-AATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
8917729 ATATTAAAAA
Statistics
Matches: 69, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
5 27 0.39
6 36 0.52
7 6 0.09
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:8918187 original size:30 final size:30
Alignment explanation
Indices: 8918152--8918209 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
8918142 ATAATTAGAT
*
8918152 AAATAAAAG-AAATAGATAAATAAAAATAAA
1 AAATAAAAGTAAATAAAT-AATAAAAATAAA
*
8918182 AAATAAAAGTAGATAAATAATAAAAATA
1 AAATAAAAGTAAATAAATAATAAAAATA
8918210 TTAATAGATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 19 0.76
31 6 0.24
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (30 bp):
AAATAAAAGTAAATAAATAATAAAAATAAA
Found at i:8918197 original size:23 final size:22
Alignment explanation
Indices: 8918108--8918223 Score: 80
Period size: 23 Copynumber: 5.3 Consensus size: 22
8918098 TAATCAAAAT
* *
8918108 TAAAAGATAAATATATTAATAGA
1 TAAAA-ATAAAAATATAAATAGA
* *
8918131 TAACAA-AAAAA-ATAATTAGA
1 TAAAAATAAAAATATAAATAGA
* * *
8918151 T--AAATAAAAGAAATAGATAAA
1 TAAAAATAAAA-ATATAAATAGA
8918172 TAAAAATAAAAA-ATAAAAGTAGA
1 TAAAAATAAAAATAT-AAA-TAGA
*
8918195 TAAATAATAAAAATATTAATAGA
1 TAAA-AATAAAAATATAAATAGA
8918218 TAAAAA
1 TAAAAA
8918224 AATAAAGAAT
Statistics
Matches: 73, Mismatches: 11, Indels: 19
0.71 0.11 0.18
Matches are distributed among these distances:
18 2 0.03
19 4 0.05
20 9 0.12
21 13 0.18
22 6 0.08
23 27 0.37
24 10 0.14
25 2 0.03
ACGTcount: A:0.69, C:0.01, G:0.07, T:0.23
Consensus pattern (22 bp):
TAAAAATAAAAATATAAATAGA
Found at i:8919685 original size:35 final size:35
Alignment explanation
Indices: 8919622--8919697 Score: 100
Period size: 35 Copynumber: 2.1 Consensus size: 35
8919612 AAAAATTCAA
*
8919622 CCCCTACCCCCCAACACTCCACCACACCCAATCCCT
1 CCCC-ACCTCCCAACACTCCACCACACCCAATCCCT
* *
8919658 TCCCACCTCCCAACAC-CCTACCGCACCCAATCCCT
1 CCCCACCTCCCAACACTCC-ACCACACCCAATCCCT
8919693 CCCCA
1 CCCCA
8919698 TGTGCGTAGC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
34 2 0.06
35 30 0.86
36 3 0.09
ACGTcount: A:0.24, C:0.63, G:0.01, T:0.12
Consensus pattern (35 bp):
CCCCACCTCCCAACACTCCACCACACCCAATCCCT
Found at i:8920063 original size:18 final size:19
Alignment explanation
Indices: 8920030--8920066 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
8920020 AGAGTTTGAG
*
8920030 TTTTATTTTTTGCTTTTGC
1 TTTTATTTTTTACTTTTGC
8920049 TTTTA-TTTTTACTTTTGC
1 TTTTATTTTTTACTTTTGC
8920067 AGGTTTATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.08, C:0.11, G:0.08, T:0.73
Consensus pattern (19 bp):
TTTTATTTTTTACTTTTGC
Found at i:8920254 original size:51 final size:51
Alignment explanation
Indices: 8920170--8920267 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
8920160 AATAACGATT
*
8920170 CGTTATTGTCGCTATTCTCTGTTACATCATAATTTACGAT-CGTTACATGTC
1 CGTTATTGTCACTATTCTCTGTTACATCATAATTTACG-TCCGTTACATGTC
* *
8920221 CGTTATTGTCACTATTCTCTGTTATATCGTAATTTACGTCCGTTACA
1 CGTTATTGTCACTATTCTCTGTTACATCATAATTTACGTCCGTTACA
8920268 CTTCGTTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 1 0.02
51 42 0.98
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.44
Consensus pattern (51 bp):
CGTTATTGTCACTATTCTCTGTTACATCATAATTTACGTCCGTTACATGTC
Found at i:8925395 original size:534 final size:534
Alignment explanation
Indices: 8924387--8925920 Score: 2951
Period size: 534 Copynumber: 2.9 Consensus size: 534
8924377 TTTTTCACAG
* * * * *
8924387 CTACAGGCAATGGCAGAGGCCCCTCTCCCAGTACTAAGCATTTGCATGGGATATACACACTTGAA
1 CTACAGGCAATGGCAAAGGCCCCTCTCCCAGTACTTAGCAGTTGCATAGTATATACACACTTGAA
* *
8924452 AAGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCGTTATGTTTAGCCATCCGTATA
66 AAGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCATTATGTTTAGCCATCTGTATA
8924517 TCATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTAGTGATGGCAGATAGCAAA
131 TCATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTAGTGATGGCAGATAGCAAA
8924582 ATTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAAATTTGTAAACAAGACAAAGA
196 ATTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAAATTTGTAAACAAGACAAAGA
8924647 AAAGAAATGAAGTATACAAAAAAAGACCATGTCCAAAGGCTAACAATAAATACTTTTGCAACTGA
261 AAAGAAATGAAGTATACAAAAAAAGACCATGTCCAAAGGCTAACAATAAATACTTTTGCAACTGA
8924712 TATGAGAATCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACT
326 TATGAGAATCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACT
8924777 TTGTTTAACATACTAGAATCAAGTACCACTACAACCAGTCAAGACATTCTCACAACCACCTTGTT
391 TTGTTTAACATACTAGAATCAAGTACCACTACAACCAGTCAAGACATTCTCACAACCACCTTGTT
8924842 CTTCTTGCTAGCAGATAAAAGAAGAACTTTGCCATCCACAATGTCTTTGGCCTCTATTCTTTTAC
456 CTTCTTGCTAGCAGATAAAAGAAGAACTTTGCCATCCACAATGTCTTTGGCCTCTATTCTTTTAC
8924907 TTTCATTATCTACT
521 TTTCATTATCTACT
8924921 CTACAGGCAATGGCAAAGGCCCCTCTCCCAGTACTTAGCAGTTGCATAGTATATACACACTTGAA
1 CTACAGGCAATGGCAAAGGCCCCTCTCCCAGTACTTAGCAGTTGCATAGTATATACACACTTGAA
8924986 AAGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCATTATGTTTAGCCATCTGTATA
66 AAGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCATTATGTTTAGCCATCTGTATA
8925051 TCATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTAGTGATGGCAGATAGCAAA
131 TCATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTAGTGATGGCAGATAGCAAA
8925116 ATTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAAATTTGTAAACAAGACAAAGA
196 ATTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAAATTTGTAAACAAGACAAAGA
8925181 AAAGAAATGAAGTATACAAAAAAAGACCATGTCCAAAGGCTAACAATAAATACTTTTGCAACTGA
261 AAAGAAATGAAGTATACAAAAAAAGACCATGTCCAAAGGCTAACAATAAATACTTTTGCAACTGA
8925246 TATGAGAATCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACT
326 TATGAGAATCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACT
8925311 TTGTTTAACATACTAGAATCAAGTACCACTACAACCAGTCAAGACATTCTCACAACCACCTTGTT
391 TTGTTTAACATACTAGAATCAAGTACCACTACAACCAGTCAAGACATTCTCACAACCACCTTGTT
8925376 CTTCTTGCTAGCAGATAAAAGAAGAACTTTGCCATCCACAATGTCTTTGGCCTCTATTCTTTTAC
456 CTTCTTGCTAGCAGATAAAAGAAGAACTTTGCCATCCACAATGTCTTTGGCCTCTATTCTTTTAC
8925441 TTTCATTATCTACT
521 TTTCATTATCTACT
*
8925455 ATACAGGCAATGGCAAAGGCCCCTCTCCCAGTACTTAGCAGTTGCATAGTATATACACACTTGAA
1 CTACAGGCAATGGCAAAGGCCCCTCTCCCAGTACTTAGCAGTTGCATAGTATATACACACTTGAA
8925520 AAGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCATTATGTTTAGCCATCTGTATA
66 AAGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCATTATGTTTAGCCATCTGTATA
*
8925585 TCATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTTGTGATGGCAGATAGCAAA
131 TCATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTAGTGATGGCAGATAGCAAA
8925650 ATTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAAATTTGTAAACAAGACAAAGA
196 ATTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAAATTTGTAAACAAGACAAAGA
* *
8925715 AAAGAAATGATGTATACAAAAAAAGACCATGTCTAAAGGCTAACAATAAATACTTTTGCAACTGA
261 AAAGAAATGAAGTATACAAAAAAAGACCATGTCCAAAGGCTAACAATAAATACTTTTGCAACTGA
8925780 TATGAGAATCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACT
326 TATGAGAATCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACT
* *
8925845 TTGTTTAACATACTAGAATCAAGTACCACTACAGCCAGTCAAGACATTCTCACAACCACCTAGTT
391 TTGTTTAACATACTAGAATCAAGTACCACTACAACCAGTCAAGACATTCTCACAACCACCTTGTT
8925910 CTTCTTGCTAG
456 CTTCTTGCTAG
8925921 AATGTGGCAT
Statistics
Matches: 987, Mismatches: 13, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
534 987 1.00
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (534 bp):
CTACAGGCAATGGCAAAGGCCCCTCTCCCAGTACTTAGCAGTTGCATAGTATATACACACTTGAA
AAGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCATTATGTTTAGCCATCTGTATA
TCATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTAGTGATGGCAGATAGCAAA
ATTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAAATTTGTAAACAAGACAAAGA
AAAGAAATGAAGTATACAAAAAAAGACCATGTCCAAAGGCTAACAATAAATACTTTTGCAACTGA
TATGAGAATCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACT
TTGTTTAACATACTAGAATCAAGTACCACTACAACCAGTCAAGACATTCTCACAACCACCTTGTT
CTTCTTGCTAGCAGATAAAAGAAGAACTTTGCCATCCACAATGTCTTTGGCCTCTATTCTTTTAC
TTTCATTATCTACT
Found at i:8926262 original size:398 final size:398
Alignment explanation
Indices: 8925521--8926315 Score: 1518
Period size: 398 Copynumber: 2.0 Consensus size: 398
8925511 ACACTTGAAA
8925521 AGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCATTATGTTTAGCCATCTGTATAT
1 AGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCATTATGTTTAGCCATCTGTATAT
8925586 CATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTTGTGATGGCAGATAGCAAAA
66 CATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTTGTGATGGCAGATAGCAAAA
8925651 TTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAAATTTGTAAACAAGACAAAGAA
131 TTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAAATTTGTAAACAAGACAAAGAA
*
8925716 AAGAAATGATGTATACAAAAAAAGACCATGTCTAAAGGCTAACAATAAATACTTTTGCAACTGAT
196 AAGAAATGATGTATACAAAAAAAGACCATGTCTAAAAGCTAACAATAAATACTTTTGCAACTGAT
*
8925781 ATGAGAATCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACTT
261 ATGAGAACCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACTT
*
8925846 TGTTTAACATACTAGAATCAAGTACCACTACAGCCAGTCAAGACATTCTCACAACCACCTAGTTC
326 TGTTTAACATACTAGAATCAAGTACCACTACAACCAGTCAAGACATTCTCACAACCACCTAGTTC
8925911 TTCTTGCT
391 TTCTTGCT
8925919 AGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCATTATGTTTAGCCATCTGTATAT
1 AGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCATTATGTTTAGCCATCTGTATAT
8925984 CATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTTGTGATGGCAGATAGCAAAA
66 CATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTTGTGATGGCAGATAGCAAAA
*
8926049 TTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAATTTTGTAAACAAGACAAAGAA
131 TTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAAATTTGTAAACAAGACAAAGAA
8926114 AAGAAATGATGTATACAAAAAAAGACCATGTCTAAAAGCTAACAATAAATACTTTTGCAACTGAT
196 AAGAAATGATGTATACAAAAAAAGACCATGTCTAAAAGCTAACAATAAATACTTTTGCAACTGAT
8926179 ATGAGAACCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACTT
261 ATGAGAACCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACTT
* * * *
8926244 TGTTTAATATATTAGAATCAAGTACCACTACAACCAGTCAAGACATTCTTACAACCACCTTGTTC
326 TGTTTAACATACTAGAATCAAGTACCACTACAACCAGTCAAGACATTCTCACAACCACCTAGTTC
8926309 TTCTTGC
391 TTCTTGC
8926316 CAGCAGATAA
Statistics
Matches: 389, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
398 389 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (398 bp):
AGAATGTGGCATTTCATAGTTTATAACATGCATGCTAAGACCATTATGTTTAGCCATCTGTATAT
CATATCATATTTTACAATTTAATAGCAAGTGTATTTTCAACAACTTGTGATGGCAGATAGCAAAA
TTGAAAACCTGGCCATTCCTTGCCCAAAAAATCAAAGGATATAAATTTGTAAACAAGACAAAGAA
AAGAAATGATGTATACAAAAAAAGACCATGTCTAAAAGCTAACAATAAATACTTTTGCAACTGAT
ATGAGAACCACCTTATGCGAAAATATTACCTTTCTTTTGTTAATATATCATTAAATCCAAAACTT
TGTTTAACATACTAGAATCAAGTACCACTACAACCAGTCAAGACATTCTCACAACCACCTAGTTC
TTCTTGCT
Found at i:8928942 original size:13 final size:14
Alignment explanation
Indices: 8928912--8928945 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
8928902 ATCATAAAAA
8928912 AAATCAAATCAAAT
1 AAATCAAATCAAAT
*
8928926 AAATCAAA-CAGAT
1 AAATCAAATCAAAT
8928939 AAATCAA
1 AAATCAA
8928946 CGTATAACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.65, C:0.15, G:0.03, T:0.18
Consensus pattern (14 bp):
AAATCAAATCAAAT
Found at i:8929200 original size:14 final size:14
Alignment explanation
Indices: 8929181--8929211 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
8929171 CTAATAATGA
8929181 TTTTTTCTTCTTTT
1 TTTTTTCTTCTTTT
*
8929195 TTTTTTTTTCTTTT
1 TTTTTTCTTCTTTT
8929209 TTT
1 TTT
8929212 GCTGTTTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTTTCTTCTTTT
Found at i:8931395 original size:14 final size:14
Alignment explanation
Indices: 8931376--8931419 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
8931366 TAAAATGATA
8931376 AAAAATTATCATGC
1 AAAAATTATCATGC
* *
8931390 AAAAATTATTATAC
1 AAAAATTATCATGC
8931404 AAATAA-TATCATGC
1 AAA-AATTATCATGC
8931418 AA
1 AA
8931420 TTAAATATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
14 23 0.92
15 2 0.08
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.30
Consensus pattern (14 bp):
AAAAATTATCATGC
Found at i:8931637 original size:10 final size:10
Alignment explanation
Indices: 8931624--8931674 Score: 50
Period size: 10 Copynumber: 4.9 Consensus size: 10
8931614 AATAATATTG
8931624 AAAAATAAAC
1 AAAAATAAAC
*
8931634 AAAAATAAAATA
1 AAAAAT-AAA-C
*
8931646 AAAAATAAGC
1 AAAAATAAAC
8931656 AAAAATAAA-
1 AAAAATAAAC
8931665 ATAAAATAAA
1 A-AAAATAAA
8931675 ATTCAAAGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 1 0.03
10 22 0.65
11 5 0.15
12 6 0.18
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.14
Consensus pattern (10 bp):
AAAAATAAAC
Found at i:8931652 original size:22 final size:22
Alignment explanation
Indices: 8931624--8931670 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
8931614 AATAATATTG
8931624 AAAAATAAACAAAAATAAAATA
1 AAAAATAAACAAAAATAAAATA
*
8931646 AAAAATAAGCAAAAATAAAATA
1 AAAAATAAACAAAAATAAAATA
8931668 AAA
1 AAA
8931671 TAAAATTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.13
Consensus pattern (22 bp):
AAAAATAAACAAAAATAAAATA
Found at i:8932931 original size:3 final size:3
Alignment explanation
Indices: 8932923--8932958 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
8932913 TAATGAGTAA
*
8932923 AAT AAT AATT AAA AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AA
8932959 GTAAAAATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8934423 original size:12 final size:12
Alignment explanation
Indices: 8934406--8934456 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
8934396 TAAATTTTAA
*
8934406 AAAATCAAAATT
1 AAAATCAAAATC
8934418 AAAATCAAAATC
1 AAAATCAAAATC
*
8934430 AAAATCAAGATC
1 AAAATCAAAATC
* *
8934442 GAAATTAAAATC
1 AAAATCAAAATC
8934454 AAA
1 AAA
8934457 TTACAATTAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.65, C:0.12, G:0.04, T:0.20
Consensus pattern (12 bp):
AAAATCAAAATC
Found at i:8934446 original size:18 final size:18
Alignment explanation
Indices: 8934406--8934456 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
8934396 TAAATTTTAA
*
8934406 AAAATCAAAATTAAAATC
1 AAAATCAAAATCAAAATC
*
8934424 AAAATCAAAATCAAGATC
1 AAAATCAAAATCAAAATC
* *
8934442 GAAATTAAAATCAAA
1 AAAATCAAAATCAAA
8934457 TTACAATTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.65, C:0.12, G:0.04, T:0.20
Consensus pattern (18 bp):
AAAATCAAAATCAAAATC
Found at i:8938665 original size:23 final size:24
Alignment explanation
Indices: 8938619--8938665 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
8938609 TCGTAAACTT
*
8938619 AAAAACTTATATTATCAATTTAAAA
1 AAAAACTTATATTAT-AATATAAAA
8938644 AAAAACTTATATTAT-ATATAAA
1 AAAAACTTATATTATAATATAAA
8938666 TTTATTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.29
25 15 0.71
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36
Consensus pattern (24 bp):
AAAAACTTATATTATAATATAAAA
Found at i:8940447 original size:64 final size:65
Alignment explanation
Indices: 8940300--8940479 Score: 170
Period size: 64 Copynumber: 2.8 Consensus size: 65
8940290 TTATAAGACC
* * * * * * *
8940300 TCCAAACATAGTCTCTAAGTCTTTTGGGTAAGATTCATAAATCTTTC-AAGCTTAATTTGTTTTA
1 TCCAAACATAGTCTATAAGTCTTTCGAGTAAGATTCGTAAGT-TTTCTGAGCTAAATTTGTTTTA
*
8940364 T
65 A
* ** *
8940365 TCTAGGCATA-TCTATAAGTCTTTCGAATAAGATTCGTAAGTTTTCTGAGCTAAATTTGTTTTAA
1 TCCAAACATAGTCTATAAGTCTTTCGAGTAAGATTCGTAAGTTTTCTGAGCTAAATTTGTTTTAA
* * * *
8940429 TCCAAACATAGTCT-TAAGT-GTTCTAGGCAAGATTCGTAAGTCTTCTGAGCT
1 TCCAAACATAGTCTATAAGTCTTTCGA-GTAAGATTCGTAAGTTTTCTGAGCT
8940480 TGATCTATTT
Statistics
Matches: 92, Mismatches: 20, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
63 8 0.09
64 74 0.80
65 10 0.11
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (65 bp):
TCCAAACATAGTCTATAAGTCTTTCGAGTAAGATTCGTAAGTTTTCTGAGCTAAATTTGTTTTAA
Found at i:8943123 original size:13 final size:14
Alignment explanation
Indices: 8943095--8943124 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8943085 AAATAGTGCC
*
8943095 AAAAAGCCATTAAA
1 AAAAAGACATTAAA
8943109 AAAAAGACATTAAA
1 AAAAAGACATTAAA
8943123 AA
1 AA
8943125 TGGCAGAGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.10, G:0.07, T:0.13
Consensus pattern (14 bp):
AAAAAGACATTAAA
Found at i:8945059 original size:15 final size:18
Alignment explanation
Indices: 8945025--8945064 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
8945015 AATTTATTAA
8945025 TTAATATAGTATTAATTT
1 TTAATATAGTATTAATTT
8945043 TTAATAT-G-ATTAATTT
1 TTAATATAGTATTAATTT
*
8945059 TAAATA
1 TTAATA
8945065 ATAATATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 13 0.62
17 1 0.05
18 7 0.33
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (18 bp):
TTAATATAGTATTAATTT
Found at i:8945651 original size:27 final size:27
Alignment explanation
Indices: 8945593--8945652 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
8945583 GATAAAATGT
* * *
8945593 TATTAATAAATAATTTTTTAAATCTCA
1 TATTAATAAATAAATTTATAAATATCA
* * *
8945620 CATTAATTAATAAATTTATAAATATTA
1 TATTAATAAATAAATTTATAAATATCA
8945647 TATTAA
1 TATTAA
8945653 ATATTTTACT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.47
Consensus pattern (27 bp):
TATTAATAAATAAATTTATAAATATCA
Found at i:8949102 original size:13 final size:14
Alignment explanation
Indices: 8949084--8949116 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8949074 TTTTAATATT
8949084 TTAAAAT-AAAAAA
1 TTAAAATGAAAAAA
8949097 TTAAAATGAAAAAA
1 TTAAAATGAAAAAA
*
8949111 ATAAAA
1 TTAAAA
8949117 AATAGAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (14 bp):
TTAAAATGAAAAAA
Found at i:8949114 original size:22 final size:21
Alignment explanation
Indices: 8949086--8949127 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
8949076 TTAATATTTT
8949086 AAAATAAAAAATTAAAATGAAA
1 AAAATAAAAAA-TAAAATGAAA
*
8949108 AAAATAAAAAATAGAATGAA
1 AAAATAAAAAATAAAATGAA
8949128 CATTTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (21 bp):
AAAATAAAAAATAAAATGAAA
Found at i:8949827 original size:11 final size:12
Alignment explanation
Indices: 8949811--8949847 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
8949801 TACTTTTTAG
8949811 ATTTTATTAAA-
1 ATTTTATTAAAT
8949822 ATTTTA-TAAAT
1 ATTTTATTAAAT
8949833 ATTTTA-TAAAT
1 ATTTTATTAAAT
8949844 ATTT
1 ATTT
8949848 AATTTTTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 4 0.16
11 21 0.84
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
ATTTTATTAAAT
Found at i:8951171 original size:13 final size:12
Alignment explanation
Indices: 8951155--8951224 Score: 68
Period size: 12 Copynumber: 5.6 Consensus size: 12
8951145 TCCTTTTTGT
8951155 TTTTTTTTTTTAA
1 TTTTTTTTTTT-A
**
8951168 TTTTTTTGGTTA
1 TTTTTTTTTTTA
8951180 TTTTTTCTTTTTTA
1 -TTTTT-TTTTTTA
* *
8951194 TTTTTCTTTTTC
1 TTTTTTTTTTTA
*
8951206 TTTTTATTTTTA
1 TTTTTTTTTTTA
8951218 TTTTTTT
1 TTTTTTT
8951225 AATTAGATAA
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
12 22 0.48
13 19 0.41
14 5 0.11
ACGTcount: A:0.09, C:0.04, G:0.03, T:0.84
Consensus pattern (12 bp):
TTTTTTTTTTTA
Found at i:8951204 original size:32 final size:32
Alignment explanation
Indices: 8951148--8951225 Score: 81
Period size: 32 Copynumber: 2.4 Consensus size: 32
8951138 CATTAGCTCC
8951148 TTTTTGTTTTTTT-TTTTTAATTTTT-TTGGTTA
1 TTTTT-TTTTTTTATTTTTAATTTTTCTT-GTTA
* *
8951180 TTTTTTCTTTTTTATTTTT-CTTTTTCTTTTTA
1 TTTTTT-TTTTTTATTTTTAATTTTTCTTGTTA
8951212 TTTTTATTTTTTTA
1 TTTTT-TTTTTTTA
8951226 ATTAGATAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
31 1 0.03
32 31 0.77
33 8 0.20
ACGTcount: A:0.09, C:0.04, G:0.04, T:0.83
Consensus pattern (32 bp):
TTTTTTTTTTTTATTTTTAATTTTTCTTGTTA
Found at i:8951223 original size:19 final size:20
Alignment explanation
Indices: 8951177--8951223 Score: 71
Period size: 18 Copynumber: 2.5 Consensus size: 20
8951167 ATTTTTTTGG
8951177 TTATTTTTTCTTTTTTATTT
1 TTATTTTTTCTTTTTTATTT
*
8951197 TT-CTTTTTC-TTTTTATTT
1 TTATTTTTTCTTTTTTATTT
8951215 TTATTTTTT
1 TTATTTTTT
8951224 TAATTAGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 11 0.46
19 11 0.46
20 2 0.08
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.85
Consensus pattern (20 bp):
TTATTTTTTCTTTTTTATTT
Found at i:8952297 original size:12 final size:12
Alignment explanation
Indices: 8952280--8952309 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
8952270 ATGAGCTCCC
8952280 TTTTTTTCTTTT
1 TTTTTTTCTTTT
8952292 TTTTTTTCTTTT
1 TTTTTTTCTTTT
8952304 TGTTTT
1 T-TTTT
8952310 CTTAATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.00, C:0.07, G:0.03, T:0.90
Consensus pattern (12 bp):
TTTTTTTCTTTT
Found at i:8952984 original size:42 final size:42
Alignment explanation
Indices: 8952936--8953028 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
8952926 TTTTTTCTTC
*
8952936 ATTTTTTCCACTTTATTTTTATTTTTAATTAGATAAATGTTTT
1 ATTTTTTCC-CTTTATTTTTATTTTTAATTAGATAAATATTTT
*
8952979 ATTTTTTCCTTTTATTTTTATTTTTAATTAGATAAATATTTT
1 ATTTTTTCCCTTTATTTTTATTTTTAATTAGATAAATATTTT
8953021 ATATTTTT
1 AT-TTTTT
8953029 TTCCTTTTCA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
42 33 0.70
43 14 0.30
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (42 bp):
ATTTTTTCCCTTTATTTTTATTTTTAATTAGATAAATATTTT
Found at i:8953045 original size:42 final size:41
Alignment explanation
Indices: 8952946--8953044 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 41
8952936 ATTTTTTCCA
* * *
8952946 CTTT-ATTTTTATTTTTAATTAGATAAATGTTTTATTTTTT
1 CTTTCATTTTAATTTTTAATTAGATAAATATTTTATATTTT
* *
8952986 CCTTTTATTTTTATTTTTAATTAGATAAATATTTTATATTTT
1 -CTTTCATTTTAATTTTTAATTAGATAAATATTTTATATTTT
*
8953028 -TTTCCTTTTCAATTTTT
1 CTTTCATTTT-AATTTTT
8953045 TTTTTATTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
40 7 0.14
41 10 0.20
42 34 0.67
ACGTcount: A:0.24, C:0.06, G:0.03, T:0.67
Consensus pattern (41 bp):
CTTTCATTTTAATTTTTAATTAGATAAATATTTTATATTTT
Found at i:8955268 original size:14 final size:13
Alignment explanation
Indices: 8955249--8955286 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
8955239 CTCTGTTTCA
8955249 TTTCTTGTTTTTTT
1 TTTCTT-TTTTTTT
8955263 TTTCTTTTTTTTT
1 TTTCTTTTTTTTT
8955276 TTT-TTTTTTTT
1 TTTCTTTTTTTT
8955287 CATTTTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 8 0.33
13 10 0.42
14 6 0.25
ACGTcount: A:0.00, C:0.05, G:0.03, T:0.92
Consensus pattern (13 bp):
TTTCTTTTTTTTT
Found at i:8955272 original size:10 final size:11
Alignment explanation
Indices: 8955257--8955295 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
8955247 CATTTCTTGT
8955257 TTTTTTTTTC-
1 TTTTTTTTTCA
**
8955267 TTTTTTTTTTT
1 TTTTTTTTTCA
8955278 TTTTTTTTTCA
1 TTTTTTTTTCA
8955289 TTTTTTT
1 TTTTTTT
8955296 AAATTTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 9 0.36
11 16 0.64
ACGTcount: A:0.03, C:0.05, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTTCA
Found at i:8955272 original size:11 final size:11
Alignment explanation
Indices: 8955256--8955295 Score: 64
Period size: 10 Copynumber: 3.6 Consensus size: 11
8955246 TCATTTCTTG
8955256 TTTTTTTTTTC
1 TTTTTTTTTTC
8955267 TTTTTTTTTT-
1 TTTTTTTTTTC
8955277 TTTTTTTTTTC
1 TTTTTTTTTTC
8955288 ATTTTTTT
1 -TTTTTTT
8955296 AAATTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.37
11 10 0.37
12 7 0.26
ACGTcount: A:0.03, C:0.05, G:0.00, T:0.93
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:8955282 original size:21 final size:21
Alignment explanation
Indices: 8955256--8955295 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
8955246 TCATTTCTTG
*
8955256 TTTTTTTTTTCTTTTTTTTTT
1 TTTTTTTTTTCATTTTTTTTT
8955277 TTTTTTTTTTCATTTTTTT
1 TTTTTTTTTTCATTTTTTT
8955296 AAATTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.03, C:0.05, G:0.00, T:0.93
Consensus pattern (21 bp):
TTTTTTTTTTCATTTTTTTTT
Found at i:8955304 original size:1 final size:1
Alignment explanation
Indices: 8955256--8955286 Score: 53
Period size: 1 Copynumber: 31.0 Consensus size: 1
8955246 TCATTTCTTG
*
8955256 TTTTTTTTTTCTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8955287 CATTTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.03, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:8955311 original size:8 final size:7
Alignment explanation
Indices: 8955256--8955324 Score: 52
Period size: 7 Copynumber: 9.4 Consensus size: 7
8955246 TCATTTCTTG
8955256 TTTT-TT
1 TTTTATT
*
8955262 TTTTCTT
1 TTTTATT
*
8955269 TTTTTTT
1 TTTTATT
*
8955276 TTTTTTT
1 TTTTATT
8955283 TTTTCATTT
1 TTTT-A-TT
8955292 TTTTAAATT
1 TTTT--ATT
8955301 TTTTATGT
1 TTTTAT-T
8955309 TTTTA-T
1 TTTTATT
8955315 TTTTATT
1 TTTTATT
8955322 TTT
1 TTT
8955325 AATTAGATAA
Statistics
Matches: 54, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
6 10 0.19
7 25 0.46
8 6 0.11
9 12 0.22
10 1 0.02
ACGTcount: A:0.10, C:0.03, G:0.01, T:0.86
Consensus pattern (7 bp):
TTTTATT
Found at i:8955311 original size:9 final size:8
Alignment explanation
Indices: 8955259--8955318 Score: 61
Period size: 8 Copynumber: 7.6 Consensus size: 8
8955249 TTTCTTGTTT
*
8955259 TTTTTTTC
1 TTTTTTTA
8955267 TTTTTTT-
1 TTTTTTTA
8955274 TTTTTTT-
1 TTTTTTTA
*
8955281 TTTTTTCA
1 TTTTTTTA
8955289 TTTTTTTAA
1 TTTTTTT-A
*
8955298 ATTTTTTA
1 TTTTTTTA
*
8955306 TGTTTTTA
1 TTTTTTTA
8955314 TTTTT
1 TTTTT
8955319 ATTTTTAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
7 13 0.30
8 24 0.55
9 7 0.16
ACGTcount: A:0.10, C:0.03, G:0.02, T:0.85
Consensus pattern (8 bp):
TTTTTTTA
Found at i:8955700 original size:13 final size:14
Alignment explanation
Indices: 8955676--8955716 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 14
8955666 ATAAGAAGCA
8955676 TTTTATTTTTTTAC
1 TTTTATTTTTTTAC
*
8955690 TTTTATTTTTTATAAT
1 TTTTATTTTTT-T-AC
8955706 TTTTATTTTTT
1 TTTTATTTTTT
8955717 AATTAGATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 11 0.46
15 1 0.04
16 12 0.50
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTATTTTTTTAC
Found at i:8955719 original size:14 final size:14
Alignment explanation
Indices: 8955676--8955720 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
8955666 ATAAGAAGCA
* *
8955676 TTTTATTTTTTTAC
1 TTTTATTTTTTAAT
8955690 TTTTATTTTTTATAAT
1 TTTTA-TTTTT-TAAT
8955706 TTTTATTTTTTAAT
1 TTTTATTTTTTAAT
8955720 T
1 T
8955721 AGATAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 10 0.37
15 10 0.37
16 7 0.26
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTATTTTTTAAT
Found at i:8957689 original size:23 final size:21
Alignment explanation
Indices: 8957663--8957705 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8957653 CATATAGAGA
8957663 TAAATATATATAAAATTATATTG
1 TAAATAT-TA-AAAATTATATTG
*
8957686 TAAATATTACAAATTATATT
1 TAAATATTAAAAATTATATT
8957706 AAGTTATTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 10 0.53
22 2 0.11
23 7 0.37
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (21 bp):
TAAATATTAAAAATTATATTG
Found at i:8957985 original size:43 final size:43
Alignment explanation
Indices: 8957908--8957991 Score: 132
Period size: 43 Copynumber: 2.0 Consensus size: 43
8957898 CGCAATTCTG
* *
8957908 TCCAACAGTCAATAACTCTGTGATGTACCATGAAGATGGTCTA
1 TCCAACAGTCAATAACTCTCTGATATACCATGAAGATGGTCTA
* *
8957951 TCCAACAGTCAATAACTGTCTGATATACCGTGAAGATGGTC
1 TCCAACAGTCAATAACTCTCTGATATACCATGAAGATGGTC
8957992 GCGATAGAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (43 bp):
TCCAACAGTCAATAACTCTCTGATATACCATGAAGATGGTCTA
Found at i:8958248 original size:14 final size:14
Alignment explanation
Indices: 8958225--8958254 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8958215 CGATAATTAA
*
8958225 TTTTTGAAAAATAT
1 TTTTTAAAAAATAT
8958239 TTTTTAAAAAATAT
1 TTTTTAAAAAATAT
8958253 TT
1 TT
8958255 ATATGTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (14 bp):
TTTTTAAAAAATAT
Found at i:8963240 original size:15 final size:16
Alignment explanation
Indices: 8963222--8963258 Score: 58
Period size: 15 Copynumber: 2.3 Consensus size: 16
8963212 AAAAATGATG
8963222 AAAAAGAAAAAA-AAA
1 AAAAAGAAAAAAGAAA
8963237 AAAAAGAAAAAATGAAA
1 AAAAAGAAAAAA-GAAA
8963254 AAAAA
1 AAAAA
8963259 ATTGATGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 12 0.60
17 8 0.40
ACGTcount: A:0.89, C:0.00, G:0.08, T:0.03
Consensus pattern (16 bp):
AAAAAGAAAAAAGAAA
Found at i:8964764 original size:18 final size:19
Alignment explanation
Indices: 8964722--8964766 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
8964712 TCATATATTT
*
8964722 TTTTTATTCTCTTTCTTTTC
1 TTTTT-TTCACTTTCTTTTC
8964742 TTTTTTTCACTTT-TTTTC
1 TTTTTTTCACTTTCTTTTC
8964760 TTTTTTT
1 TTTTTTT
8964767 TATCCATTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 12 0.50
19 7 0.29
20 5 0.21
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTTTCACTTTCTTTTC
Found at i:8964767 original size:19 final size:20
Alignment explanation
Indices: 8964721--8964767 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
8964711 TTCATATATT
*
8964721 TTTTTTATTCTCTTTCTTTTC
1 TTTTTT-TTCACTTTCTTTTC
8964742 -TTTTTTTCACTTT-TTTTC
1 TTTTTTTTCACTTTCTTTTC
8964760 TTTTTTTT
1 TTTTTTTT
8964768 ATCCATTTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 5 0.21
19 14 0.58
20 5 0.21
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (20 bp):
TTTTTTTTCACTTTCTTTTC
Found at i:8964781 original size:41 final size:38
Alignment explanation
Indices: 8964719--8964826 Score: 91
Period size: 41 Copynumber: 2.8 Consensus size: 38
8964709 CTTTCATATA
8964719 TTTTTTTTATTCTC-TTTCTTTTCTTTTTTTCACTTTTTTTC
1 TTTTTTTTA-TC-CATTTCTTTTCTTTTTTTC-C-TTTTTTC
8964760 TTTTTTTTATCCATTTCCTTTT-TTTTCTTT-CTTTTTTC
1 TTTTTTTTATCCATTT-CTTTTCTTTT-TTTCCTTTTTTC
* * *
8964798 -ATCTTTCAT-CATTTTCTTTTCTTTTTTTC
1 TTTTTTTTATCCA-TTTCTTTTCTTTTTTTC
8964827 TCATCTTTCA
Statistics
Matches: 58, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
36 10 0.17
37 13 0.22
38 7 0.12
39 2 0.03
40 9 0.16
41 17 0.29
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.75
Consensus pattern (38 bp):
TTTTTTTTATCCATTTCTTTTCTTTTTTTCCTTTTTTC
Found at i:8964804 original size:28 final size:29
Alignment explanation
Indices: 8964752--8964836 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 29
8964742 TTTTTTTCAC
8964752 TTTTTTTC-TTTTTTTT-ATCCATTTC-C-T
1 TTTTTTTCTTTTTTTTTCAT-C-TTTCACAT
8964779 TTTTTTTCTTTCTTTTTTCATCTTTCATCAT
1 TTTTTTTCTTT-TTTTTTCATCTTTCA-CAT
*
8964810 TTTCTTTTCTTTTTTTCTCATCTTTCA
1 TTT-TTTTCTTTTTTTTTCATCTTTCA
8964837 TCCATTGTTG
Statistics
Matches: 50, Mismatches: 1, Indels: 10
0.82 0.02 0.16
Matches are distributed among these distances:
27 8 0.16
28 6 0.12
29 7 0.14
30 3 0.06
31 18 0.36
32 8 0.16
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (29 bp):
TTTTTTTCTTTTTTTTTCATCTTTCACAT
Found at i:8964834 original size:31 final size:31
Alignment explanation
Indices: 8964778--8964838 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
8964768 ATCCATTTCC
*
8964778 TTTTTTTTCTTTCTTTTTTCATCTTTCATCA
1 TTTTTTTTCTTTCTTTTCTCATCTTTCATCA
8964809 TTTTCTTTTCTTT-TTTTCTCATCTTTCATC
1 TTTT-TTTTCTTTCTTTTCTCATCTTTCATC
8964839 CATTGTTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 20 0.71
32 8 0.29
ACGTcount: A:0.08, C:0.21, G:0.00, T:0.70
Consensus pattern (31 bp):
TTTTTTTTCTTTCTTTTCTCATCTTTCATCA
Found at i:8969856 original size:51 final size:51
Alignment explanation
Indices: 8969788--8969884 Score: 131
Period size: 51 Copynumber: 1.9 Consensus size: 51
8969778 ATTATTATGA
* * *
8969788 AAATGATGCATAAAATGATATGATATAATAATGCTTAAAACATGAGAATGG
1 AAATAATGCATAAAATGATATAACATAATAATGCTTAAAACATGAGAATGG
* * * *
8969839 AAATAATGCATAGAATGATGTAACATGATAATGTTTAAAACATGAG
1 AAATAATGCATAAAATGATATAACATAATAATGCTTAAAACATGAG
8969885 GATGCATGTT
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 39 1.00
ACGTcount: A:0.48, C:0.06, G:0.18, T:0.28
Consensus pattern (51 bp):
AAATAATGCATAAAATGATATAACATAATAATGCTTAAAACATGAGAATGG
Found at i:8971354 original size:26 final size:25
Alignment explanation
Indices: 8971298--8971354 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
8971288 TTTTCACCTA
*
8971298 AAATTTTTATAAAAATTTACCATTTG
1 AAATTTTTAT-AAAATTTACCATTGG
*
8971324 AAATTTTTAT-AAATTTCATCATTGG
1 AAATTTTTATAAAATTT-ACCATTGG
8971349 ATAATT
1 A-AATT
8971355 AATATTTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 6 0.22
25 7 0.26
26 14 0.52
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.47
Consensus pattern (25 bp):
AAATTTTTATAAAATTTACCATTGG
Found at i:8972176 original size:6 final size:6
Alignment explanation
Indices: 8972165--8972287 Score: 60
Period size: 6 Copynumber: 20.5 Consensus size: 6
8972155 TCAAGACACC
* * * *
8972165 AAAATA AAAAT- AAAATC AAAATC AAAATGA CAAA-A ATAAT- AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAAT-A AAAATA AAAATA AAAATA
* * * *
8972211 ATAAA-A AAAATA AAAA-A AAAGATA ATAATA ATAATA ATAATGA TAAA-A
1 A-AAATA AAAATA AAAATA AAA-ATA AAAATA AAAATA AAAAT-A AAAATA
* *
8972259 AAATTA AAAATTA AAAATTA AAACTA AAA
1 AAAATA AAAA-TA AAAA-TA AAAATA AAA
8972288 TTGGGCTAGA
Statistics
Matches: 94, Mismatches: 12, Indels: 22
0.73 0.09 0.17
Matches are distributed among these distances:
5 22 0.23
6 48 0.51
7 24 0.26
ACGTcount: A:0.74, C:0.03, G:0.02, T:0.20
Consensus pattern (6 bp):
AAAATA
Done.