Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 54 of 100
Found at i:9973759 original size:59 final size:59
Alignment explanation
Indices: 9973681--9973821 Score: 156
Period size: 59 Copynumber: 2.4 Consensus size: 59
9973671 GTTCATAAAT
* * * * * * *
9973681 TTTATTATTTTATTTAAATAAATTTTTATATTTTTATTAAACTTAAATAAATTTTTAACC
1 TTTATT-TTATATTTAAATAAATTTTTAAAATTTAATTAAACTTAAATAAAATATTAACA
* * * *
9973741 TTTATTTTATATTTAAATAAAATTTTAAAATTTAATTTAATTTAAATAAAATATTATCA
1 TTTATTTTATATTTAAATAAATTTTTAAAATTTAATTAAACTTAAATAAAATATTAACA
* *
9973800 TTTAATTTGTATTTAAATAAAT
1 TTTATTTTATATTTAAATAAAT
9973822 AAAATTTTAA
Statistics
Matches: 67, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
59 61 0.91
60 6 0.09
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.54
Consensus pattern (59 bp):
TTTATTTTATATTTAAATAAATTTTTAAAATTTAATTAAACTTAAATAAAATATTAACA
Found at i:9973822 original size:29 final size:29
Alignment explanation
Indices: 9973723--9973820 Score: 106
Period size: 30 Copynumber: 3.3 Consensus size: 29
9973713 TTTATTAAAC
* * * *
9973723 TTAAATAAATTTTTAACCTTTATTTTATAT
1 TTAAATAAAATATTAACATTTAATTT-TAT
* * *
9973753 TTAAATAAAATTTTAAAATTTAATTTAAT
1 TTAAATAAAATATTAACATTTAATTTTAT
*
9973782 TTAAATAAAATATTATCATTTAATTTGTAT
1 TTAAATAAAATATTAACATTTAATTT-TAT
9973812 TTAAATAAA
1 TTAAATAAA
9973821 TAAAATTTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
29 25 0.43
30 33 0.57
ACGTcount: A:0.46, C:0.03, G:0.01, T:0.50
Consensus pattern (29 bp):
TTAAATAAAATATTAACATTTAATTTTAT
Found at i:9973867 original size:39 final size:35
Alignment explanation
Indices: 9973809--9973899 Score: 91
Period size: 36 Copynumber: 2.6 Consensus size: 35
9973799 ATTTAATTTG
*
9973809 TATTTAAATAAAT-AAAAT--TTTAATATAAACTAATT
1 TATTTAAAAAAATAAAAATAATTTAA-ATAAA--AATT
*
9973844 T-TTTATTAAAAATAAAAATAATTTAAATAAAAATT
1 TATTTA-AAAAAATAAAAATAATTTAAATAAAAATT
9973879 TATTTAAAAATAATAAAAATA
1 TATTTAAAAA-AATAAAAATA
9973900 TAAAATTTTA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
34 4 0.09
35 14 0.30
36 19 0.40
37 5 0.11
38 5 0.11
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (35 bp):
TATTTAAAAAAATAAAAATAATTTAAATAAAAATT
Found at i:9973915 original size:29 final size:27
Alignment explanation
Indices: 9973856--9973915 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
9973846 TTATTAAAAA
** *
9973856 TAAAAATAATTTAAATAAAAATTTATT
1 TAAAAATAATAAAAATAAAAATTTATC
9973883 TAAAAATAATAAAAATATAAAATTTTATC
1 TAAAAATAATAAAAATA-AAAA-TTTATC
9973912 TAAA
1 TAAA
9973916 TAAAATAGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 15 0.54
28 4 0.14
29 9 0.32
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.37
Consensus pattern (27 bp):
TAAAAATAATAAAAATAAAAATTTATC
Found at i:9973920 original size:33 final size:30
Alignment explanation
Indices: 9973853--9973928 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 30
9973843 TTTTTATTAA
**
9973853 AAATAAAAATAATTTAAATAAAAATTTATT
1 AAATAAAAATAATAAAAATAAAAATTTATT
9973883 ---TAAAAATAATAAAAATATAAAATTTTATCT
1 AAATAAAAATAATAAAAATA-AAAA-TTTAT-T
*
9973913 AAAT-AAAATAGTAAAA
1 AAATAAAAATAATAAAA
9973929 TTTAAAAACT
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
27 15 0.41
28 4 0.11
29 5 0.14
30 1 0.03
32 11 0.30
33 1 0.03
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (30 bp):
AAATAAAAATAATAAAAATAAAAATTTATT
Found at i:9978703 original size:2 final size:2
Alignment explanation
Indices: 9978698--9978722 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9978688 AAAAATATCG
9978698 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
9978723 GAACAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9979331 original size:62 final size:62
Alignment explanation
Indices: 9979229--9979345 Score: 148
Period size: 61 Copynumber: 1.9 Consensus size: 62
9979219 GGGGAGTTTC
* ** * *
9979229 ATTTTTTATAAGAGGATTATTAAAGGTGTTTTGTACAAAAAACGCCTTTAATAATCCTCTCTA
1 ATTTTTTATAAGAGGATTATTAAAGGCG-TTTGGCCAAAAAACACCTTGAATAATCCTCTCTA
*
9979292 ATTTTTTATAAG-GGATTATTGAAGGCGTTTAGG-CAAAAAACACCTTGAATAATC
1 ATTTTTTATAAGAGGATTATTAAAGGCGTTT-GGCCAAAAAACACCTTGAATAATC
9979346 TGCTCATAAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
61 22 0.46
62 14 0.29
63 12 0.25
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (62 bp):
ATTTTTTATAAGAGGATTATTAAAGGCGTTTGGCCAAAAAACACCTTGAATAATCCTCTCTA
Found at i:9988288 original size:34 final size:34
Alignment explanation
Indices: 9988250--9988318 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
9988240 TGCAAGATAA
9988250 GATTTTTTTTATTAGGTCAAAAACCTTTGATGAT
1 GATTTTTTTTATTAGGTCAAAAACCTTTGATGAT
*
9988284 GATTTTTTTTATTAGGTTAAAAACCTTTGATGAT
1 GATTTTTTTTATTAGGTCAAAAACCTTTGATGAT
9988318 G
1 G
9988319 GCATCAAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.07, G:0.16, T:0.48
Consensus pattern (34 bp):
GATTTTTTTTATTAGGTCAAAAACCTTTGATGAT
Found at i:9988933 original size:41 final size:40
Alignment explanation
Indices: 9988863--9988963 Score: 114
Period size: 41 Copynumber: 2.5 Consensus size: 40
9988853 TAGGTGTTGT
*
9988863 CCTTTATTTTTAAAATTGTTATACATTTATTAT-GAAAAAG
1 CCTTTATTTTTAAAGTTGTTATACATTTATTATAG-AAAAG
* * * **
9988903 CTTTTATTTTTATAAGTTGTTATGCTTTTATTATAGAGGAG
1 CCTTTATTTTTA-AAGTTGTTATACATTTATTATAGAAAAG
9988944 CCTTTATTTTTAAAAGTTGT
1 CCTTTATTTTT-AAAGTTGT
9988964 GCACTTTTAT
Statistics
Matches: 51, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
40 11 0.22
41 38 0.75
42 2 0.04
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.51
Consensus pattern (40 bp):
CCTTTATTTTTAAAGTTGTTATACATTTATTATAGAAAAG
Found at i:9989558 original size:20 final size:20
Alignment explanation
Indices: 9989522--9989559 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9989512 TAAACTTGTG
*
9989522 AAGATAAATTTTATTTTTAA
1 AAGATAAATTCTATTTTTAA
9989542 AAGAT-AATTCTAGTTTTT
1 AAGATAAATTCTA-TTTTT
9989560 TGACTTGGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (20 bp):
AAGATAAATTCTATTTTTAA
Found at i:9992984 original size:23 final size:23
Alignment explanation
Indices: 9992928--9992992 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
9992918 TAACTGTATG
*
9992928 ATTATATT-TAATTGCATGATA-
1 ATTATATTATTATTGCATGATAT
9992949 ATTA-A-TATTATTGCATGATAT
1 ATTATATTATTATTGCATGATAT
9992970 ATTATATTATTATTGCATGATAT
1 ATTATATTATTATTGCATGATAT
9992993 TATTTACATT
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 1 0.03
20 13 0.33
21 8 0.21
22 1 0.03
23 16 0.41
ACGTcount: A:0.37, C:0.05, G:0.09, T:0.49
Consensus pattern (23 bp):
ATTATATTATTATTGCATGATAT
Found at i:9992995 original size:13 final size:13
Alignment explanation
Indices: 9992953--9992996 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
9992943 ATGATAATTA
9992953 ATATTATTGCATG
1 ATATTATTGCATG
9992966 ATA-TATT--AT-
1 ATATTATTGCATG
9992975 ATTATTATTGCATG
1 A-TATTATTGCATG
9992989 ATATTATT
1 ATATTATT
9992997 TACATTATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
9 1 0.04
10 4 0.15
11 4 0.15
12 4 0.15
13 12 0.46
14 1 0.04
ACGTcount: A:0.34, C:0.05, G:0.09, T:0.52
Consensus pattern (13 bp):
ATATTATTGCATG
Found at i:9993206 original size:37 final size:36
Alignment explanation
Indices: 9993156--9993225 Score: 113
Period size: 37 Copynumber: 1.9 Consensus size: 36
9993146 TATATATTTA
* *
9993156 AAATCTTACCAACATATTGAAGGATAATTTTTGATGG
1 AAATCTTACCAACATATTAAAAGAT-ATTTTTGATGG
9993193 AAATCTTACCAACATATTAAAAGATATTTTTGA
1 AAATCTTACCAACATATTAAAAGATATTTTTGA
9993226 GAATAAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 8 0.26
37 23 0.74
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.36
Consensus pattern (36 bp):
AAATCTTACCAACATATTAAAAGATATTTTTGATGG
Found at i:9998483 original size:34 final size:35
Alignment explanation
Indices: 9998436--9998509 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
9998426 GTGAATCAAA
* *
9998436 AAATTCATGCGAATCT-GAATTC-TAGCAAATTTTT
1 AAATTCATGCGAATCTAAAATTCTTA-CAAATCTTT
* *
9998470 AAATTCTTTCGAATCTAAAATTCTTACAAATCTTT
1 AAATTCATGCGAATCTAAAATTCTTACAAATCTTT
9998505 AAATT
1 AAATT
9998510 TTTATGAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
34 14 0.41
35 18 0.53
36 2 0.06
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.41
Consensus pattern (35 bp):
AAATTCATGCGAATCTAAAATTCTTACAAATCTTT
Found at i:9998599 original size:18 final size:17
Alignment explanation
Indices: 9998553--9998642 Score: 117
Period size: 17 Copynumber: 5.2 Consensus size: 17
9998543 ATTTTTACAA
9998553 AATTTTAAATTCTTGTG
1 AATTTTAAATTCTTGTG
* *
9998570 AATTTGAAATTCTTGTA
1 AATTTTAAATTCTTGTG
9998587 AATCTTTAAATTCTTGTG
1 AAT-TTTAAATTCTTGTG
* *
9998605 AATATGAAATTCTTGTG
1 AATTTTAAATTCTTGTG
*
9998622 AATCTTTAAATTTTTGTG
1 AAT-TTTAAATTCTTGTG
9998640 AAT
1 AAT
9998643 CTAAAAACTT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
17 33 0.53
18 29 0.47
ACGTcount: A:0.32, C:0.07, G:0.12, T:0.49
Consensus pattern (17 bp):
AATTTTAAATTCTTGTG
Found at i:9998602 original size:35 final size:35
Alignment explanation
Indices: 9998552--9998642 Score: 148
Period size: 35 Copynumber: 2.6 Consensus size: 35
9998542 AATTTTTACA
*
9998552 AAAT-TTTAAATTCTTGTGAATTTGAAATTCTTGT
1 AAATCTTTAAATTCTTGTGAATATGAAATTCTTGT
9998586 AAATCTTTAAATTCTTGTGAATATGAAATTCTTGT
1 AAATCTTTAAATTCTTGTGAATATGAAATTCTTGT
* *
9998621 GAATCTTTAAATTTTTGTGAAT
1 AAATCTTTAAATTCTTGTGAAT
9998643 CTAAAAACTT
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
34 4 0.08
35 49 0.92
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (35 bp):
AAATCTTTAAATTCTTGTGAATATGAAATTCTTGT
Found at i:9998643 original size:18 final size:18
Alignment explanation
Indices: 9998556--9998644 Score: 119
Period size: 18 Copynumber: 5.1 Consensus size: 18
9998546 TTTACAAAAT
9998556 TTTAAATTCTTGTGAAT-
1 TTTAAATTCTTGTGAATC
* *
9998573 TTGAAATTCTTGTAAATC
1 TTTAAATTCTTGTGAATC
9998591 TTTAAATTCTTGTGAAT-
1 TTTAAATTCTTGTGAATC
* *
9998608 ATGAAATTCTTGTGAATC
1 TTTAAATTCTTGTGAATC
*
9998626 TTTAAATTTTTGTGAATC
1 TTTAAATTCTTGTGAATC
9998644 T
1 T
9998645 AAAAACTTTA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
17 30 0.49
18 31 0.51
ACGTcount: A:0.30, C:0.08, G:0.12, T:0.49
Consensus pattern (18 bp):
TTTAAATTCTTGTGAATC
Found at i:10000425 original size:27 final size:25
Alignment explanation
Indices: 10000395--10000463 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 25
10000385 TACTTTGATT
*
10000395 TTTTTAATATCTTATTTTAGTTTTT-TGT
1 TTTTT-ATAT-TTATTTTA-TTTTTAT-A
10000423 TTTTTATATATTATTTTTATTTTTATA
1 TTTTTATAT-TTA-TTTTATTTTTATA
10000450 TTTTTATATTTATT
1 TTTTTATATTTATT
10000464 ATAATTATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
25 2 0.05
26 3 0.08
27 21 0.57
28 11 0.30
ACGTcount: A:0.22, C:0.01, G:0.03, T:0.74
Consensus pattern (25 bp):
TTTTTATATTTATTTTATTTTTATA
Found at i:10000439 original size:14 final size:13
Alignment explanation
Indices: 10000422--10000463 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
10000412 TAGTTTTTTG
10000422 TTTTTTATATATTA
1 TTTTTTATAT-TTA
*
10000436 -TTTTTATTTTTA
1 TTTTTTATATTTA
10000448 TATTTTTATATTTA
1 T-TTTTTATATTTA
10000462 TT
1 TT
10000464 ATAATTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
12 3 0.12
13 9 0.38
14 12 0.50
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTTATATTTA
Found at i:10000454 original size:29 final size:29
Alignment explanation
Indices: 10000392--10000465 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 29
10000382 TTCTACTTTG
*
10000392 ATTTTTTTAATATCTTA-TTTTAGTTTTTT
1 ATTTTTTT-ATATATTATTTTTAGTTTTTT
*
10000421 -GTTTTTTATATATTATTTTTA-TTTTTAT
1 ATTTTTTTATATATTATTTTTAGTTTTT-T
* *
10000449 ATTTTTATATTTATTAT
1 ATTTTTTTATATATTAT
10000466 AATTATTTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
27 12 0.32
28 12 0.32
29 13 0.35
ACGTcount: A:0.23, C:0.01, G:0.03, T:0.73
Consensus pattern (29 bp):
ATTTTTTTATATATTATTTTTAGTTTTTT
Found at i:10000671 original size:23 final size:23
Alignment explanation
Indices: 10000641--10000684 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
10000631 CATCATAGTT
*
10000641 TATTATTATTGCATGATATATAA
1 TATTATTATTACATGATATATAA
10000664 TATTATTATTACATGATATAT
1 TATTATTATTACATGATATAT
10000685 TTACATGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.07, T:0.50
Consensus pattern (23 bp):
TATTATTATTACATGATATATAA
Found at i:10004119 original size:5 final size:6
Alignment explanation
Indices: 10004092--10004122 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
10004082 TTTTTCATCG
10004092 AAAACC AAAACC AAAACC AAAA-C AAAACC AA
1 AAAACC AAAACC AAAACC AAAACC AAAACC AA
10004123 GGGTCTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACC
Found at i:10009158 original size:21 final size:20
Alignment explanation
Indices: 10009106--10009163 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
10009096 ATTAGTGCTT
10009106 TTGTTTTTTTTACTTTTTCTA
1 TTGTTTTTTTTAC-TTTTCTA
10009127 TT-TGTTTTTTTA-TTTTCAGTA
1 TTGT-TTTTTTTACTTTTC--TA
*
10009148 TTGTTTTTTTTTCTTT
1 TTGTTTTTTTTACTTT
10009164 CTCATTTTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
19 5 0.16
20 1 0.03
21 21 0.68
22 4 0.13
ACGTcount: A:0.09, C:0.07, G:0.07, T:0.78
Consensus pattern (20 bp):
TTGTTTTTTTTACTTTTCTA
Found at i:10010678 original size:26 final size:26
Alignment explanation
Indices: 10010640--10010724 Score: 64
Period size: 30 Copynumber: 3.0 Consensus size: 26
10010630 AGTTCATAAA
10010640 TTTTATTTCTTTATTTAAATAAACTTTT
1 TTTTA-TT-TTTATTTAAATAAACTTTT
*
10010668 TTTTATTTTTATTGAACTTAAAT-AATTTTT
1 TTTTATTTTTA-T----TTAAATAAACTTTT
* *
10010698 TTTTATTTTACATTCAAATAAACTTTT
1 TTTTATTTT-TATTTAAATAAACTTTT
10010725 AAATTTTAAG
Statistics
Matches: 46, Mismatches: 4, Indels: 15
0.71 0.06 0.23
Matches are distributed among these distances:
26 9 0.20
27 9 0.20
28 5 0.11
30 16 0.35
31 7 0.15
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.61
Consensus pattern (26 bp):
TTTTATTTTTATTTAAATAAACTTTT
Found at i:10011331 original size:5 final size:6
Alignment explanation
Indices: 10011304--10011334 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
10011294 TTTTTCATCG
10011304 AAAACC AAAACC AAAACC AAAA-C AAAACC AA
1 AAAACC AAAACC AAAACC AAAACC AAAACC AA
10011335 GGGTTTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACC
Found at i:10018200 original size:21 final size:22
Alignment explanation
Indices: 10018174--10018214 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
10018164 GATAACATAT
*
10018174 TATTATTTATAAT-ATTATTTA
1 TATTATATATAATAATTATTTA
*
10018195 TATTATATCTAATAATTATT
1 TATTATATATAATAATTATT
10018215 GTGATAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (22 bp):
TATTATATATAATAATTATTTA
Found at i:10020949 original size:24 final size:24
Alignment explanation
Indices: 10020916--10020974 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
10020906 ATTTCACTTT
* * *
10020916 TTAATCATTTTATATAAGACAAT-
1 TTAATAATTTTAAATAAGAAAATG
*
10020939 TTATATAATTTTAAATATGAAAATG
1 TTA-ATAATTTTAAATAAGAAAATG
10020964 TTAATAATTTT
1 TTAATAATTTT
10020975 GAATCGTGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
23 3 0.10
24 24 0.80
25 3 0.10
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.47
Consensus pattern (24 bp):
TTAATAATTTTAAATAAGAAAATG
Found at i:10021089 original size:3 final size:3
Alignment explanation
Indices: 10021081--10021122 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
10021071 GTTGCTTGCT
10021081 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10021123 GGTTATTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10021657 original size:8 final size:8
Alignment explanation
Indices: 10021646--10021691 Score: 76
Period size: 8 Copynumber: 5.9 Consensus size: 8
10021636 TATTAATTAA
10021646 ACAAAAAT
1 ACAAAAAT
10021654 AC-AAAAT
1 ACAAAAAT
10021661 ACAAAAAT
1 ACAAAAAT
*
10021669 ATAAAAAT
1 ACAAAAAT
10021677 ACAAAAAT
1 ACAAAAAT
10021685 ACAAAAA
1 ACAAAAA
10021692 AGTAAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
7 7 0.20
8 28 0.80
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.13
Consensus pattern (8 bp):
ACAAAAAT
Found at i:10021683 original size:24 final size:23
Alignment explanation
Indices: 10021648--10021699 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 23
10021638 TTAATTAAAC
10021648 AAAAATACAAAATACAAAAATA-T
1 AAAAATACAAAATACAAAAA-AGT
10021671 AAAAATACAAAAATACAAAAAAGT
1 AAAAATAC-AAAATACAAAAAAGT
10021695 AAAAA
1 AAAAA
10021700 AAGGCTGATG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
23 9 0.33
24 18 0.67
ACGTcount: A:0.77, C:0.08, G:0.02, T:0.13
Consensus pattern (23 bp):
AAAAATACAAAATACAAAAAAGT
Found at i:10021699 original size:16 final size:15
Alignment explanation
Indices: 10021644--10021692 Score: 71
Period size: 15 Copynumber: 3.2 Consensus size: 15
10021634 TTTATTAATT
10021644 AAACAAAAATACAAA
1 AAACAAAAATACAAA
* *
10021659 ATACAAAAATATAAA
1 AAACAAAAATACAAA
10021674 AATACAAAAATACAAA
1 AA-ACAAAAATACAAA
10021690 AAA
1 AAA
10021693 GTAAAAAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 15 0.52
16 14 0.48
ACGTcount: A:0.78, C:0.10, G:0.00, T:0.12
Consensus pattern (15 bp):
AAACAAAAATACAAA
Found at i:10024151 original size:15 final size:14
Alignment explanation
Indices: 10024113--10024152 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
10024103 CACTTTTAAC
*
10024113 AAAAAAAAAGTCAA
1 AAAAAAAAAATCAA
*
10024127 GAAAAAAAAATCAA
1 AAAAAAAAAATCAA
10024141 AAAGAAAAAAAT
1 AAA-AAAAAAAT
10024153 TTCCCTTACG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.80, C:0.05, G:0.07, T:0.07
Consensus pattern (14 bp):
AAAAAAAAAATCAA
Found at i:10027025 original size:19 final size:19
Alignment explanation
Indices: 10026988--10027040 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
10026978 TGAAAATAGG
10026988 AATAGC-GGCAATAGCGGT
1 AATAGCGGGCAATAGCGGT
* *
10027006 AATAGCGGGTAATAGTGGT
1 AATAGCGGGCAATAGCGGT
10027025 AATAGCGGGCAATAGC
1 AATAGCGGGCAATAGC
10027041 AGACCGCTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
18 6 0.20
19 24 0.80
ACGTcount: A:0.34, C:0.13, G:0.34, T:0.19
Consensus pattern (19 bp):
AATAGCGGGCAATAGCGGT
Found at i:10027040 original size:10 final size:9
Alignment explanation
Indices: 10026988--10027032 Score: 63
Period size: 9 Copynumber: 4.9 Consensus size: 9
10026978 TGAAAATAGG
*
10026988 AATAGCGGC
1 AATAGCGGT
10026997 AATAGCGGT
1 AATAGCGGT
10027006 AATAGCGGGT
1 AATAGC-GGT
*
10027016 AATAGTGGT
1 AATAGCGGT
10027025 AATAGCGG
1 AATAGCGG
10027033 GCAATAGCAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
9 24 0.75
10 8 0.25
ACGTcount: A:0.33, C:0.11, G:0.36, T:0.20
Consensus pattern (9 bp):
AATAGCGGT
Found at i:10031514 original size:10 final size:10
Alignment explanation
Indices: 10031470--10031528 Score: 57
Period size: 10 Copynumber: 5.7 Consensus size: 10
10031460 TATAAAAATA
*
10031470 ATTTTT-TAA
1 ATTTTTATAT
*
10031479 ATTATTTATTT
1 ATT-TTTATAT
*
10031490 AATTTTATAATT
1 ATTTTTAT-A-T
10031502 ATTTTTATAT
1 ATTTTTATAT
10031512 ATTTTTATAT
1 ATTTTTATAT
10031522 ATTTTTA
1 ATTTTTA
10031529 ATTTTATATT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
9 3 0.07
10 26 0.63
11 4 0.10
12 8 0.20
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
ATTTTTATAT
Found at i:10037039 original size:98 final size:99
Alignment explanation
Indices: 10036902--10037310 Score: 420
Period size: 98 Copynumber: 4.1 Consensus size: 99
10036892 TTTCGAGAAC
* * *
10036902 AGATGAGATTTTTTAAAGTTGTTGAGCCTCTACTAAGAAGAGCTTTTTTAAGATAAAATTTTAAA
1 AGATGAGAATTTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTCAAGATAAAATTTTAAA
* * * *
10036967 GTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCA
66 ATTGTTGAGCCTCTACTGAGATGAGCTTTTTTCA
* * * *
10037001 AGATGA-AATTTTTAAAGTTGTTGAGCTTCTACTTAGAAGAGC-TTTTCCAGATAAGATTTTTAA
1 AGATGAGAATTTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTCAAGATAA-AATTTTAA
* ** * * *
10037064 AATTGTTGAACCTCTGTTGAAAAGAGTTTTTTTTCA
65 AATTGTTGAGCCTCTACTGAGATGAG-CTTTTTTCA
* *
10037100 AGAT-AGAA-TTTTAAAGTTGTT-ACACCTCTACTGAGATGAGCTTTTTCAAGATAAAATTTTAA
1 AGATGAGAATTTTTAAAGTTGTTGA-GCCTCTACTGAGAAGAGCTTTTTCAAGATAAAATTTTAA
* * *
10037162 AATTTTTAAGCCTCTACTGATATGAGCTTTTTTCA
65 AATTGTTGAGCCTCTACTGAGATGAGCTTTTTTCA
* * * *
10037197 AGAT-A-AATCTTTAAAATTGTTGAGCCTCTGCTGAG-AGAAGCCTTTTTTAAGATGAAAATTTT
1 AGATGAGAATTTTTAAAGTTGTTGAGCCTCTACTGAGAAG-AG-CTTTTTCAAGAT-AAAATTTT
* * * *
10037259 AAAGTTATTGAGCTTCTATTGAGATGAGCTTTTTTTCA
63 AAAATTGTTGAGCCTCTACTGAGATGAGC-TTTTTTCA
*
10037297 AAATGAGAATTTTT
1 AGATGAGAATTTTT
10037311 TTTTAAGTTA
Statistics
Matches: 256, Mismatches: 41, Indels: 23
0.80 0.13 0.07
Matches are distributed among these distances:
96 3 0.01
97 47 0.18
98 127 0.50
99 61 0.24
100 11 0.04
101 1 0.00
102 6 0.02
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (99 bp):
AGATGAGAATTTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTCAAGATAAAATTTTAAA
ATTGTTGAGCCTCTACTGAGATGAGCTTTTTTCA
Found at i:10037294 original size:50 final size:48
Alignment explanation
Indices: 10036912--10037292 Score: 365
Period size: 48 Copynumber: 7.8 Consensus size: 48
10036902 AGATGAGATT
* *
10036912 TTTTAAAGTTGTTGAGCCTCTACTAAGAAGAGCTTTTTTAAGATAAAA
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTCAAGATAAAA
* * *
10036960 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATGAAAT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAAGAG-CTTTTTCAAGAT-AAAA
* * * *
10037010 TTTTAAAGTTGTTGAGCTTCTACTTAGAAGAGC-TTTTCCAGATAAGAT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTCAAGATAA-AA
* * ** * * *
10037058 TTTTAAAATTGTTGAACCTCTGTTGAAAAGAGTTTTTTTTCAAGATAGAA
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAAGAG--CTTTTTCAAGATAAAA
* *
10037108 TTTTAAAGTTGTT-ACACCTCTACTGAGATGAGCTTTTTCAAGATAAAA
1 TTTTAAAGTTGTTGA-GCCTCTACTGAGAAGAGCTTTTTCAAGATAAAA
* * * * *
10037156 TTTTAAAATTTTTAAGCCTCTACTGATATGAGCTTTTTTCAAGAT-AAA
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGC-TTTTTCAAGATAAAA
* * *
10037204 TCTTTAAAATTGTTGAGCCTCTGCTGAG-AGAAGCCTTTTTTAAGATGAAAA
1 T-TTTAAAGTTGTTGAGCCTCTACTGAGAAG-AG-CTTTTTCAAGAT-AAAA
* * * *
10037255 TTTTAAAGTTATTGAGCTTCTATTGAGATGAGCTTTTT
1 TTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTT
10037293 TTCAAAATGA
Statistics
Matches: 274, Mismatches: 44, Indels: 29
0.79 0.13 0.08
Matches are distributed among these distances:
47 2 0.01
48 111 0.41
49 65 0.24
50 81 0.30
51 15 0.05
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (48 bp):
TTTTAAAGTTGTTGAGCCTCTACTGAGAAGAGCTTTTTCAAGATAAAA
Found at i:10037782 original size:8 final size:8
Alignment explanation
Indices: 10037771--10037808 Score: 60
Period size: 8 Copynumber: 4.9 Consensus size: 8
10037761 TATTAATTAA
10037771 ACAAAAAT
1 ACAAAAAT
10037779 AC-AAAAT
1 ACAAAAAT
10037786 ACAAAAAT
1 ACAAAAAT
*
10037794 ATAAAAAT
1 ACAAAAAT
10037802 ACAAAAA
1 ACAAAAA
10037809 AATAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
7 7 0.26
8 20 0.74
ACGTcount: A:0.76, C:0.11, G:0.00, T:0.13
Consensus pattern (8 bp):
ACAAAAAT
Found at i:10037800 original size:16 final size:16
Alignment explanation
Indices: 10037771--10037816 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
10037761 TATTAATTAA
*
10037771 ACAAAAATA-CAAAAT
1 ACAAAAATATAAAAAT
10037786 ACAAAAATATAAAAAT
1 ACAAAAATATAAAAAT
*
10037802 ACAAAAAAATAAAAA
1 ACAAAAATATAAAAA
10037817 AATAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
15 9 0.32
16 19 0.68
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.13
Consensus pattern (16 bp):
ACAAAAATATAAAAAT
Found at i:10037811 original size:18 final size:17
Alignment explanation
Indices: 10037788--10037827 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 17
10037778 TACAAAATAC
*
10037788 AAAAATATAAAAATACAA
1 AAAAATAAAAAAATA-AA
10037806 AAAAATAAAAAAATAAA
1 AAAAATAAAAAAATAAA
10037823 AAAAA
1 AAAAA
10037828 GGCTGATGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAAATAAAAAAATAAA
Found at i:10037815 original size:8 final size:8
Alignment explanation
Indices: 10037781--10037826 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
10037771 ACAAAAATAC
10037781 AAAATACAA
1 AAAATA-AA
10037790 AAATATAAA
1 AAA-ATAAA
* *
10037799 AATACAAA
1 AAAATAAA
10037807 AAAATAAA
1 AAAATAAA
10037815 AAAATAAA
1 AAAATAAA
10037823 AAAA
1 AAAA
10037827 AGGCTGATGA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
8 22 0.69
9 7 0.22
10 3 0.09
ACGTcount: A:0.83, C:0.04, G:0.00, T:0.13
Consensus pattern (8 bp):
AAAATAAA
Found at i:10038978 original size:22 final size:19
Alignment explanation
Indices: 10038937--10038993 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 19
10038927 GTAAAAAAAA
*
10038937 TTATTTTTTTGAATTTTTT
1 TTATTTTTTTAAATTTTTT
10038956 TTATTCTTTTTAAATATTATTT
1 TTATT-TTTTTAAAT-TT-TTT
*
10038978 TTATTATTTTAAATTT
1 TTATTTTTTTAAATTT
10038994 GTTATTAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
19 5 0.15
20 10 0.30
21 10 0.30
22 8 0.24
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (19 bp):
TTATTTTTTTAAATTTTTT
Found at i:10041699 original size:26 final size:26
Alignment explanation
Indices: 10041669--10041721 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
10041659 TTTGTGCTTT
*
10041669 TTGAATAGTACTATGAGTTTGAACTA
1 TTGAATAGTACTATAAGTTTGAACTA
*
10041695 TTGAATGGTACTATAAGTTTGAACTA
1 TTGAATAGTACTATAAGTTTGAACTA
10041721 T
1 T
10041722 ATTAAAGTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.40
Consensus pattern (26 bp):
TTGAATAGTACTATAAGTTTGAACTA
Found at i:10044356 original size:21 final size:21
Alignment explanation
Indices: 10044312--10044361 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
10044302 GCTTTTGTTT
* **
10044312 TTTTACTTTTTGCTATTTGTC
1 TTTTATTTTTTGCTATTTCAC
*
10044333 TTTTATTTTTTGCTTTTTCAC
1 TTTTATTTTTTGCTATTTCAC
10044354 TTTGTATT
1 TTT-TATT
10044362 GAAGAAAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.10, C:0.12, G:0.08, T:0.70
Consensus pattern (21 bp):
TTTTATTTTTTGCTATTTCAC
Found at i:10045927 original size:13 final size:13
Alignment explanation
Indices: 10045909--10045933 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10045899 ATCTAATTTG
10045909 TATTTAAATATAT
1 TATTTAAATATAT
10045922 TATTTAAATATA
1 TATTTAAATATA
10045934 ATAAAAATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATTTAAATATAT
Found at i:10047476 original size:2 final size:2
Alignment explanation
Indices: 10047469--10047498 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10047459 TTGGGGGTTT
10047469 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10047499 AACAGTGTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10047785 original size:36 final size:37
Alignment explanation
Indices: 10047738--10047811 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 37
10047728 GACATTTTTC
10047738 TAGATAATATATAACATATTTTGAAT-AATTATTGTT
1 TAGATAATATATAACATATTTTGAATAAATTATTGTT
* * * **
10047774 TAGATAGTATATAAGATGTTTTGCCTAAATTATTGTT
1 TAGATAATATATAACATATTTTGAATAAATTATTGTT
10047811 T
1 T
10047812 CATAAATATG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
36 21 0.66
37 11 0.34
ACGTcount: A:0.36, C:0.04, G:0.12, T:0.47
Consensus pattern (37 bp):
TAGATAATATATAACATATTTTGAATAAATTATTGTT
Found at i:10052165 original size:35 final size:34
Alignment explanation
Indices: 10052126--10052226 Score: 114
Period size: 35 Copynumber: 2.9 Consensus size: 34
10052116 AGATAAAATG
*
10052126 AAGAGTCCGTGTAACATGAGTGTCAGTTCATACAT
1 AAGAGTCC-TGTAACATGAGTATCAGTTCATACAT
* **
10052161 AAGAGTCCTTGTAACATGAGTATCAGGATCA-AGTT
1 AAGAGTCC-TGTAACATGAGTATCA-GTTCATACAT
*
10052196 AAGAGTACCTGTAACATGAGTATCAATTCAT
1 AAGAGT-CCTGTAACATGAGTATCAGTTCAT
10052227 TGAGAAGAGT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
34 3 0.05
35 47 0.84
36 6 0.11
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.29
Consensus pattern (34 bp):
AAGAGTCCTGTAACATGAGTATCAGTTCATACAT
Found at i:10052450 original size:32 final size:29
Alignment explanation
Indices: 10052407--10052468 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 29
10052397 AAAGAGATAG
10052407 TAGTAACGTGTGAGGAGTTCTTGAATTGTCAC
1 TAGTAACGTGT---GAGTTCTTGAATTGTCAC
*
10052439 TAGTAATGTGTGAGTTCTTGAATTGTCAC
1 TAGTAACGTGTGAGTTCTTGAATTGTCAC
10052468 T
1 T
10052469 CAATGAATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 19 0.66
32 10 0.34
ACGTcount: A:0.24, C:0.11, G:0.26, T:0.39
Consensus pattern (29 bp):
TAGTAACGTGTGAGTTCTTGAATTGTCAC
Found at i:10055281 original size:2 final size:2
Alignment explanation
Indices: 10055276--10055308 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
10055266 ATTATGTAGT
*
10055276 TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10055309 CCATCTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:10055518 original size:12 final size:12
Alignment explanation
Indices: 10055501--10055525 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10055491 TCATATTTTA
10055501 ATATTTTAAAAT
1 ATATTTTAAAAT
10055513 ATATTTTAAAAT
1 ATATTTTAAAAT
10055525 A
1 A
10055526 AAATTAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATATTTTAAAAT
Found at i:10059400 original size:15 final size:16
Alignment explanation
Indices: 10059368--10059401 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
10059358 TTTAACAAAC
*
10059368 AATTTATAATATTTAT
1 AATTTATAATATTAAT
10059384 AATTTAT-ATATTAAT
1 AATTTATAATATTAAT
10059399 AAT
1 AAT
10059402 AAATCAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATTTATAATATTAAT
Found at i:10061778 original size:21 final size:21
Alignment explanation
Indices: 10061754--10061793 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10061744 CTATTGAACC
10061754 TATTTAATAATAAATTTATTA
1 TATTTAATAATAAATTTATTA
* * *
10061775 TATTTTATAGTAATTTTAT
1 TATTTAATAATAAATTTAT
10061794 ATTTTACTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (21 bp):
TATTTAATAATAAATTTATTA
Found at i:10062586 original size:2 final size:2
Alignment explanation
Indices: 10062579--10062627 Score: 55
Period size: 2 Copynumber: 25.0 Consensus size: 2
10062569 AACTTAACAA
* * * *
10062579 AT AT AT AT AT AT AT AT AT AT AT GT A- AC AA AT AT AT AT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10062620 AT AT AT AT
1 AT AT AT AT
10062628 TTTTAATAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
1 1 0.03
2 39 0.98
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.45
Consensus pattern (2 bp):
AT
Found at i:10062909 original size:2 final size:2
Alignment explanation
Indices: 10062902--10062929 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10062892 TCAGTTAAAT
10062902 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10062930 AAGATCACAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10064119 original size:15 final size:17
Alignment explanation
Indices: 10064092--10064140 Score: 66
Period size: 15 Copynumber: 3.0 Consensus size: 17
10064082 ATTTTAAAAG
10064092 TTAATATAATATATAAA
1 TTAATATAATATATAAA
*
10064109 TT-ATA-AATATATTAA
1 TTAATATAATATATAAA
*
10064124 TTAATATAATATTTAAA
1 TTAATATAATATATAAA
10064141 AAATTTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 11 0.41
16 6 0.22
17 10 0.37
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TTAATATAATATATAAA
Found at i:10064203 original size:18 final size:17
Alignment explanation
Indices: 10064180--10064228 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 17
10064170 AAAATTAATC
10064180 ATATTAAAAATAAATATT
1 ATATTAAAAATAAAT-TT
*
10064198 ATATTAATTAATAAATTT
1 ATATTAA-AAATAAATTT
10064216 ATAATTTAAAAAT
1 AT-A-TTAAAAAT
10064229 TATATTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 11 0.42
19 11 0.42
20 4 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATTAAAAATAAATTT
Found at i:10066647 original size:20 final size:20
Alignment explanation
Indices: 10066622--10066660 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10066612 TATTTGAATT
*
10066622 TATATTTAATATATTATTAA
1 TATATTTAATATAATATTAA
*
10066642 TATATTTGATATAATATTA
1 TATATTTAATATAATATTA
10066661 TACAATCTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
TATATTTAATATAATATTAA
Found at i:10066932 original size:24 final size:22
Alignment explanation
Indices: 10066863--10066932 Score: 59
Period size: 24 Copynumber: 3.0 Consensus size: 22
10066853 ATTTTTATCC
10066863 AAATATGCCTTTATTTCTAACAA
1 AAATATGCCTTTATTTCTAA-AA
* ** **
10066886 AAACATTGAATTTATTTAAAAAA
1 AAATA-TGCCTTTATTTCTAAAA
10066909 TGAAATATGCCTTTATTTCTAAAA
1 --AAATATGCCTTTATTTCTAAAA
10066933 CCTTGAATTA
Statistics
Matches: 34, Mismatches: 10, Indels: 5
0.69 0.20 0.10
Matches are distributed among these distances:
23 6 0.18
24 24 0.71
25 4 0.12
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (22 bp):
AAATATGCCTTTATTTCTAAAA
Found at i:10066985 original size:29 final size:30
Alignment explanation
Indices: 10066950--10067017 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 30
10066940 TTATGTTAAG
* *
10066950 AATTTATTTAAATATATATTAAA-AATAAA
1 AATTTATTTAAATACAAATTAAATAATAAA
**
10066979 AATTTATTTAAATACAAATTAAATTTTAAA
1 AATTTATTTAAATACAAATTAAATAATAAA
10067009 AATTTATTT
1 AATTTATTT
10067018 CTATGCAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 21 0.62
30 13 0.38
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (30 bp):
AATTTATTTAAATACAAATTAAATAATAAA
Found at i:10072365 original size:19 final size:17
Alignment explanation
Indices: 10072337--10072372 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 17
10072327 AAAAATTCCG
10072337 AAATAAAAATTTTGAAAT
1 AAATAAAAA-TTTGAAAT
10072355 AAATGAAAAATTTGAAAT
1 AAAT-AAAAATTTGAAAT
10072373 CATAGGTCGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (17 bp):
AAATAAAAATTTGAAAT
Found at i:10072790 original size:10 final size:10
Alignment explanation
Indices: 10072766--10072795 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
10072756 TATTTTATCA
10072766 ATTAAAATA-
1 ATTAAAATAT
10072775 ATTAAAATAT
1 ATTAAAATAT
10072785 ATTAAAATAT
1 ATTAAAATAT
10072795 A
1 A
10072796 AAACTCGCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:10074769 original size:22 final size:23
Alignment explanation
Indices: 10074744--10074796 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
10074734 CTTCGATATT
*
10074744 AATAATTTTAAATTGATTAAAA-
1 AATAATTTTAAATTAATTAAAAG
*
10074766 AATAAATTTAAATTAATTAAAAG
1 AATAATTTTAAATTAATTAAAAG
10074789 AATAATTT
1 AATAATTT
10074797 GAACAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 20 0.74
23 7 0.26
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.40
Consensus pattern (23 bp):
AATAATTTTAAATTAATTAAAAG
Found at i:10075044 original size:2 final size:2
Alignment explanation
Indices: 10075037--10075066 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10075027 CTACTTGTTG
10075037 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10075067 GTATTCACGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10075118 original size:2 final size:2
Alignment explanation
Indices: 10075111--10075146 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
10075101 CTACTTGTTG
10075111 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10075147 TCACGTTGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10075154 original size:76 final size:74
Alignment explanation
Indices: 10075026--10075176 Score: 275
Period size: 76 Copynumber: 2.0 Consensus size: 74
10075016 AACTAAACTA
*
10075026 ACTACTTGTTGATATATATATATATATATATATATATATATGTATTCACGTTGATGGTGTTTTAG
1 ACTACTTGTTGATATATATATATATATATATATATATATATATATTCACGTTGATGGTGTTTTAG
10075091 GTCGTGATG
66 GTCGTGATG
10075100 ACTACTTGTTGATATATATATATATATATATATATATATATATATATTCACGTTGATGGTGTTTT
1 ACTACTTGTTG--ATATATATATATATATATATATATATATATATATTCACGTTGATGGTGTTTT
10075165 AGGTCGTGATG
64 AGGTCGTGATG
10075176 A
1 A
10075177 GGTGGAGCTT
Statistics
Matches: 74, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
74 11 0.15
76 63 0.85
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.46
Consensus pattern (74 bp):
ACTACTTGTTGATATATATATATATATATATATATATATATATATTCACGTTGATGGTGTTTTAG
GTCGTGATG
Found at i:10077522 original size:19 final size:20
Alignment explanation
Indices: 10077486--10077523 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
10077476 TGGTAATATA
*
10077486 AAAAAAATATTATTACAAAT
1 AAAAAAATATTATAACAAAT
*
10077506 AAAAAAATTTTA-AACAAA
1 AAAAAAATATTATAACAAA
10077524 AAATAAAAGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.26
Consensus pattern (20 bp):
AAAAAAATATTATAACAAAT
Found at i:10078446 original size:21 final size:20
Alignment explanation
Indices: 10078422--10078461 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
10078412 AGTTGACAAT
* *
10078422 ATAAAATAATTATTATTAAAA
1 ATAAAAAAATAATT-TTAAAA
10078443 ATAAAAAAATAATTTTAAA
1 ATAAAAAAATAATTTTAAA
10078462 TAAAAAGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAAAAAAATAATTTTAAAA
Found at i:10078880 original size:17 final size:17
Alignment explanation
Indices: 10078858--10078897 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
10078848 GACAGCATAA
* *
10078858 AAAAAATTATTATAAAT
1 AAAAAATAATTATAAAC
*
10078875 AAAAAATAATTCTAAAC
1 AAAAAATAATTATAAAC
10078892 AAAAAA
1 AAAAAA
10078898 AAAAGTGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (17 bp):
AAAAAATAATTATAAAC
Found at i:10079012 original size:942 final size:931
Alignment explanation
Indices: 10077414--10079558 Score: 2450
Period size: 943 Copynumber: 2.3 Consensus size: 931
10077404 ATTGTGATAG
* * * * *
10077414 TTTAAACATAATGAAAGTAACAATAGGCAT-AAAATATATTATTGTAACAAAAATAATTAAGTTG
1 TTTAAACATAATGAAAGTAACAACAAGCATAAAAAAATATTATTATAACATAAATAATTAAGTTG
** * * * *
10077478 GTAATATAAAAAAAATATTATTACAAATAAAAA-AATTTTAAACAAAAAATAAAAGTTAATGTAA
66 ACAATATAAAAAAATTATTATTACAAATAAAAATAATTTTAAA-TAAAAATAAGAGTTAATATAA
* * *
10077542 AAAAGTGAGAATAATCATAAAATTAGTATTATTTAATGTAAAATAGTTACAAGTATCGTTACACC
130 AATAGTGAGAATAATCATAAAATTAGTATTATTTAATGTAAAATAGTTAGAAGTATCATTACACC
* * * * * * *
10077607 TTAATACAATATTATGATAATTCTAAACGTAATGAAAAGTAATAACAAATGTAAAAAAATATTAA
195 TTAAAAAAAAATTATAATAATTCTAAACGTAATGAAAAGTAACAACAAA-GTGAAAAAATATTAT
* * *
10077672 CG-TA-GATAATTAAATTGGTAATGAAAAGAATTAGTATTATAAATAAAAAATAATCCTACAATA
259 TGAAATG-TAATTAAATTGGTAATGAAAAGAATTAGTATTAAAAATAAAAAATAAT-CTACAATA
*
10077735 AAAAAAAAAAGGTATTAACATAAAAATATAAGAATAATTGTAAAATTGGTATATTTAACGTAAAA
322 AAAAAAAAAAGGTATTAACATAAAAATATAAGAATAATCGTAAAATTGGTATATTTAACGTAAAA
* * * *
10077800 TGTGTTAGAAATGTCATAATACCTTAAGAAAAAGTTATAATAATTTAAACATACTAAAATATAAA
387 TATATTAGAAATGTCATAATACCTTAAGAAAAACTTATAATAATTTAAACATAATAAAATATAAA
* **
10077865 AATAAAAGTAAAAGATATTATTATAACGTAATAATTAAGTTAACAACATAAAAATTTTATTATTA
452 AATAAAAGTAAAAAATATTATTATAACGTAATAATTAAGTTAACAACATAAAAA-TAAATTATTA
* * *
10077930 TAAATAAAAAATGATTCTAAACAAAAAAATGTTAATGTAAAAAAAATGAGAGTAATTATAAAATT
516 TAAATAAAAAATAATTCTAAACAAAAAAATGTTAATGTAAAAAAAATGAAAATAATTATAAAATT
* * * * * * *
10077995 AGAATCATTTGATGTAAAGCGTGTTAGAAGTGTTCTAAAGTAAAAATGTAAGAACAATTCTAAAA
581 AAAATAATTTGATGTAAAACATATTACAAGTGTTCTAAAGTAAAAATGTAAGAACAATTATAAAA
* * * * * *
10078060 TTGGTGTCATTTGATATAAATTGGATTAGAATTATCATAACATCATAACAAAAAGTTGCGATAAA
646 TTAGTGTCATTTGACATAAATTGGATTAAAAATATCATAACAGCATAACAAAAAGTTGCAAT-AA
* *
10078125 TT-TAAACATAATAAAAACCAAGAATAAATGT-AAAAAAAAATTATTATAACATAAATAATATTT
710 TTCTAAACATAATAAAAACCAAGAACAAATATAAAAAAAAAATTATTATAACATAAATAATATTT
* * *
10078188 TTGACAATGTAAAAGAATTATTATTACAAAT-ATTAATAATTTTAAACCAAAAAATAAGTGTTAG
775 TTGAAAATATAAAAGAATTATTATTACAAATAAATAATAATTTTAAACCAAAAAATAAGTGTTA-
* * *
10078252 TATAAAAAAAAAGGGTGAGAGTAATCGTAAAATTGAAATTATTTGGCGTAAAATGGTAAAAAGTG
839 -AT-AAAAAAAA--GTGAGAGTAATCGTAAAATTGAAATCATTTGGCATAAAATGGTAAAAAGTA
* *
10078317 TTGTAACA-CTTTTAAGAAAAAAGTTGTAATACT
900 TTGTAACATC-TTTAAG-AAAAAGTTATAATAAT
* *
10078350 TTTAAATATAATGAAAGATAACAACAAACATAAAAAAAATATTATTATAACATAAATAATTAAGT
1 TTTAAACATAATGAAAG-TAACAACAAGCAT-AAAAAAATATTATTATAACATAAATAATTAAGT
* *
10078415 TGACAATATAAAATAATTATTATTAAAAATAAAAAAATAATTTTAAATAAAAAGTGAAGAGTTAA
64 TGACAATATAAAAAAATTATTATTACAAAT--AAAAATAATTTTAAATAAAAA-T-AAGAGTTAA
* * * * *
10078480 CATAAAATGGT-ATGAATAATCATAAAGTTAGTATTATTTAATGTAAAATAGTGAGAAGAATCAT
125 TATAAAATAGTGA-GAATAATCATAAAATTAGTATTATTTAATGTAAAATAGTTAGAAGTATCAT
* * * **
10078544 TATACTTTAAGAAAAAAATTGTAATAATTCTAAATATAATGAAAAGTAACAACAAACGTGAAAAA
189 TACACCTTAA-AAAAAAATTATAATAATTCTAAACGTAATGAAAAGTAACAACAAA-GTGAAAAA
*
10078609 ATATTATTGAAATGTAA-TAAATTGGTAACAT-AAAAGAATTAGTATTAAAAATAAGGAAATAAT
252 ATATTATTGAAATGTAATTAAATTGGT-A-ATGAAAAGAATTAGTATTAAAAATAA-AAAATAAT
* * * * * * * *
10078672 -T-TAAT-TAAAAAATAA-GTGTTAATATAAAAATGTGAGAATAATCGTAAAATTGATGTCT-TT
314 CTACAATAAAAAAAAAAAGGTATTAACATAAAAATATAAGAATAATCGTAAAATTG--GTATATT
** * * * * * * *
10078732 TAGTGTAGAATATATTAGAAATGTCGTAATATCTTAAGAAAAACTTTTGATGATTCTAAATATAA
377 TAACGTAAAATATATTAGAAATGTCATAATACCTTAAGAAAAACTTATAATAATT-TAAACATAA
* ** * * * *
10078797 TAAAAGT-TAAGAATAAGCGTAAAAAATTTTATTATAATGTAA-ACA-TAAGTTGACAGCATAAA
441 TAAAA-TATAAAAATAAAAGTAAAAAATATTATTATAACGTAATA-ATTAAGTTAACAACATAAA
**
10078859 AA-AAATTATTATAAATAAAAAATAATTCTAAACAAAAAAAAAAGTGTTAACT-T-AAAAATGTG
504 AATAAATTATTATAAATAAAAAATAATTCTAAAC---AAAAAAA-TGTTAA-TGTAAAAAAAATG
** *
10078921 AAAATAATTGA-AACTTTAAAATAATTT-AGTGTAAAATATATTACAA-TG-TCGTAACA-T-AA
564 AAAATAATT-ATAAAATTAAAATAATTTGA-TGTAAAACATATTACAAGTGTTC-TAA-AGTAAA
* * * * *
10078980 AATGATAAGAATAGTTATAAAATTAGTGTCATTTGGCATAAATTGGATTAAAAATGTCATAATAG
625 AATG-TAAGAACAATTATAAAATTAGTGTCATTTGACATAAATTGGATTAAAAATATCATAACAG
* * * * * ** * *
10079045 CTTGATAAAAAGTTGTAATAATTCTAAATATAATAAAAAGTAGGAACAAGTATAAAAAAAAAATT
689 CATAACAAAAAGTTGCAATAATTCTAAACATAATAAAAACCAAGAACAAATATAAAAAAAAAATT
10079110 ATTATAACATAAATAATATTTTTGAAAATATAAAAGAATTATTATTACAAATAAATAATAATTTT
754 ATTATAACATAAATAATATTTTTGAAAATATAAAAGAATTATTATTACAAATAAATAATAATTTT
* *
10079175 AAACCAAAAAATAAGTGTTAATATAAAAAAGTGAGAGTAATCGTAAAATTGATATCATTTGGCAT
819 AAACCAAAAAATAAGTGTTAATAAAAAAAAGTGAGAGTAATCGTAAAATTGAAATCATTTGGCAT
* *
10079240 AAAATGGTTAAAAGTATTGTAACATCTTTAAGAAAAAGTTATGATAAT
884 AAAATGGTAAAAAGTATTGTAACATCTTTAAGAAAAAGTTATAATAAT
* * * ** * **
10079288 TCTAAACGTAATGAAAGGTAATAACAAGTGTAAAAAGATATTATTATAATGTAAATAATTAAGTT
1 TTTAAACATAATGAAA-GTAACAACAAGCATAAAAAAATATTATTATAACATAAATAATTAAGTT
*
10079353 GACAATGTAAAAAAATTATTATTACAAATAAAAATAA--TT---TAAAAATAAGAGTTAATATAA
65 GACAATATAAAAAAATTATTATTACAAATAAAAATAATTTTAAATAAAAATAAGAGTTAATATAA
* * *
10079413 AATAATGAGAATAATCATAAAATTAGTATTATTTTACGTAAAATAGTTAGAAGTATCATTACACC
130 AATAGTGAGAATAATCATAAAATTAGTATTATTTAATGTAAAATAGTTAGAAGTATCATTACACC
* * *
10079478 TTAACAAAAAAATTATAATTATTTTAAACGTAATGAAAAGTAACAGCAAA-TGCAAAAAATATTA
195 TTAA-AAAAAAATTATAATAATTCTAAACGTAATGAAAAGTAACAACAAAGTG-AAAAAATATTA
10079542 TTGAAATGTAATTAAAT
258 TTGAAATGTAATTAAAT
10079559 AATTAAATTG
Statistics
Matches: 1020, Mismatches: 151, Indels: 84
0.81 0.12 0.07
Matches are distributed among these distances:
926 2 0.00
927 22 0.02
928 115 0.11
929 2 0.00
930 6 0.01
933 2 0.00
935 8 0.01
936 16 0.02
937 67 0.07
938 35 0.03
939 115 0.11
940 29 0.03
941 61 0.06
942 177 0.17
943 224 0.22
944 101 0.10
945 28 0.03
946 10 0.01
ACGTcount: A:0.52, C:0.06, G:0.11, T:0.31
Consensus pattern (931 bp):
TTTAAACATAATGAAAGTAACAACAAGCATAAAAAAATATTATTATAACATAAATAATTAAGTTG
ACAATATAAAAAAATTATTATTACAAATAAAAATAATTTTAAATAAAAATAAGAGTTAATATAAA
ATAGTGAGAATAATCATAAAATTAGTATTATTTAATGTAAAATAGTTAGAAGTATCATTACACCT
TAAAAAAAAATTATAATAATTCTAAACGTAATGAAAAGTAACAACAAAGTGAAAAAATATTATTG
AAATGTAATTAAATTGGTAATGAAAAGAATTAGTATTAAAAATAAAAAATAATCTACAATAAAAA
AAAAAAGGTATTAACATAAAAATATAAGAATAATCGTAAAATTGGTATATTTAACGTAAAATATA
TTAGAAATGTCATAATACCTTAAGAAAAACTTATAATAATTTAAACATAATAAAATATAAAAATA
AAAGTAAAAAATATTATTATAACGTAATAATTAAGTTAACAACATAAAAATAAATTATTATAAAT
AAAAAATAATTCTAAACAAAAAAATGTTAATGTAAAAAAAATGAAAATAATTATAAAATTAAAAT
AATTTGATGTAAAACATATTACAAGTGTTCTAAAGTAAAAATGTAAGAACAATTATAAAATTAGT
GTCATTTGACATAAATTGGATTAAAAATATCATAACAGCATAACAAAAAGTTGCAATAATTCTAA
ACATAATAAAAACCAAGAACAAATATAAAAAAAAAATTATTATAACATAAATAATATTTTTGAAA
ATATAAAAGAATTATTATTACAAATAAATAATAATTTTAAACCAAAAAATAAGTGTTAATAAAAA
AAAGTGAGAGTAATCGTAAAATTGAAATCATTTGGCATAAAATGGTAAAAAGTATTGTAACATCT
TTAAGAAAAAGTTATAATAAT
Found at i:10079510 original size:212 final size:213
Alignment explanation
Indices: 10079131--10079606 Score: 471
Period size: 212 Copynumber: 2.2 Consensus size: 213
10079121 AATAATATTT
* * *
10079131 TTGAAAATATAAAAGAATTATTATTACAAATAAATAATAATTTTAAACCAAAAAATAAGTGTTAA
1 TTGAAAATGTAAAAAAATTATTATTACAAATAAA-AATAA-TTT-----AAAAAATAAGAGTTAA
* * * * **
10079196 TATAAAAAAGTGAGAGTAATCGTAAAATTGATATCATTTGGCATAAAATGGTTAAAAGTATTGTA
59 TATAAAAAAGTGAGAATAATCATAAAATTGATATCATTTGACATAAAATAGTTAAAAGTATCATA
* * * * * * * *
10079261 ACATCTTTAAGAAAAAGTTATGATAATTCTAAACGTAATGAAAGGTAATAACAAGTGTAAAAAGA
124 ACATCCTTAAAAAAAAATTATAATAATTCTAAACGTAATGAAAAGTAACAACAAATGCAAAAA-A
*
10079326 TATTATT-ATAATG-TAAATAATTAAG
188 TATTATTGA-AATGATAAATAATTAAA
*
10079351 TTGACAATGTAAAAAAATTATTATTACAAATAAAAATAATTT-AAAAATAAGAGTTAATATAAAA
1 TTGAAAATGTAAAAAAATTATTATTACAAATAAAAATAATTTAAAAAATAAGAGTTAATATAAAA
* * * * *
10079415 TAA-TGAGAATAATCATAAAATT-AGTATTATTTTACGTAAAATAGTTAGAAGTATCATTACA-C
66 -AAGTGAGAATAATCATAAAATTGA-TATCATTTGACATAAAATAGTTAAAAGTATCATAACATC
* * *
10079477 CTTAACAAAAAAATTATAATTATTTTAAACGTAATGAAAAGTAACAGCAAATGCAAAAAATATTA
129 CTTAA-AAAAAAATTATAATAATTCTAAACGTAATGAAAAGTAACAACAAATGCAAAAAATATTA
10079542 TTGAAATGTAATTAAATAATTAAA
193 TTGAAATG--A-TAAATAATTAAA
** * * *
10079566 TTGGTAACGT-AAAAAATTATCATTATAAATAAAAAATAATT
1 TTGAAAATGTAAAAAAATTATTATTACAAAT-AAAAATAATT
10079607 GCAAACTAAA
Statistics
Matches: 215, Mismatches: 32, Indels: 23
0.80 0.12 0.09
Matches are distributed among these distances:
211 18 0.08
212 110 0.51
213 2 0.01
214 18 0.08
215 28 0.13
218 3 0.01
219 5 0.02
220 31 0.14
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.32
Consensus pattern (213 bp):
TTGAAAATGTAAAAAAATTATTATTACAAATAAAAATAATTTAAAAAATAAGAGTTAATATAAAA
AAGTGAGAATAATCATAAAATTGATATCATTTGACATAAAATAGTTAAAAGTATCATAACATCCT
TAAAAAAAAATTATAATAATTCTAAACGTAATGAAAAGTAACAACAAATGCAAAAAATATTATTG
AAATGATAAATAATTAAA
Found at i:10079635 original size:19 final size:19
Alignment explanation
Indices: 10079594--10079638 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
10079584 ATCATTATAA
*
10079594 ATAAAAAATAATTGCAAAC
1 ATAAAAAATAAGTGCAAAC
**
10079613 -TAAAAAATAAGTGTTAAC
1 ATAAAAAATAAGTGCAAAC
10079631 ATAAAAAA
1 ATAAAAAA
10079639 GTAAAAACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.22
Consensus pattern (19 bp):
ATAAAAAATAAGTGCAAAC
Found at i:10079742 original size:22 final size:22
Alignment explanation
Indices: 10079717--10079758 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
10079707 TGATAATTCT
10079717 AAACG-AAATAAAAAATTAAAAC
1 AAACGTAAA-AAAAAATTAAAAC
*
10079739 AAACGTAAAAAAAAGTTAAA
1 AAACGTAAAAAAAAATTAAA
10079759 GTAAATAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.71, C:0.07, G:0.07, T:0.14
Consensus pattern (22 bp):
AAACGTAAAAAAAAATTAAAAC
Found at i:10079813 original size:16 final size:16
Alignment explanation
Indices: 10079792--10079838 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
10079782 AAAATAATTG
10079792 ATATTTTTAAATTAAA
1 ATATTTTTAAATTAAA
10079808 ATA-TTTT-AATTAAA
1 ATATTTTTAAATTAAA
* * *
10079822 AAATTGTTAATTTAAA
1 ATATTTTTAAATTAAA
10079838 A
1 A
10079839 AATGAAAACA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
14 9 0.35
15 7 0.27
16 10 0.38
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (16 bp):
ATATTTTTAAATTAAA
Found at i:10079816 original size:15 final size:15
Alignment explanation
Indices: 10079796--10079841 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
10079786 TAATTGATAT
*
10079796 TTTTAAATTAAAATA
1 TTTTAAATTAAAAAA
10079811 TTTT-AATTAAAAAA
1 TTTTAAATTAAAAAA
*
10079825 TTGTTAATTTAAAAAA
1 TT-TTAAATTAAAAAA
10079841 T
1 T
10079842 GAAAACAATC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 11 0.41
15 6 0.22
16 10 0.37
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
TTTTAAATTAAAAAA
Found at i:10080835 original size:29 final size:28
Alignment explanation
Indices: 10080803--10080870 Score: 91
Period size: 29 Copynumber: 2.4 Consensus size: 28
10080793 TTCTGAATTA
*
10080803 TTTTATTTTTTTAAAATAAATTTTTATAT
1 TTTTATTTTATTAAAATAAATTTTTAT-T
* *
10080832 TTTTATTATATTCAAATAAATTTTTATT
1 TTTTATTTTATTAAAATAAATTTTTATT
*
10080860 TTTTGTTTTAT
1 TTTTATTTTAT
10080871 ATTCATATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 10 0.29
29 24 0.71
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (28 bp):
TTTTATTTTATTAAAATAAATTTTTATT
Found at i:10080882 original size:29 final size:29
Alignment explanation
Indices: 10080816--10080888 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
10080806 TATTTTTTTA
*
10080816 AAATAAATTTTTATATTTTTATTATATTC
1 AAATAAATTTTTATTTTTTTATTATATTC
*
10080845 AAATAAATTTTTATTTTTTGTTTTATATTC
1 AAATAAATTTTTATTTTTT-TATTATATTC
*
10080875 ATAT-AATTTTTATT
1 AAATAAATTTTTATT
10080889 CTAAAATAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
29 28 0.70
30 12 0.30
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (29 bp):
AAATAAATTTTTATTTTTTTATTATATTC
Found at i:10093374 original size:20 final size:20
Alignment explanation
Indices: 10093345--10093384 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
10093335 TCCGGGCCCG
10093345 GATCAATTGGGCCTGACCCA
1 GATCAATTGGGCCTGACCCA
* *
10093365 GATCATTTGGGCCTGGCCCA
1 GATCAATTGGGCCTGACCCA
10093385 AATGGGCAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.23
Consensus pattern (20 bp):
GATCAATTGGGCCTGACCCA
Found at i:10093699 original size:11 final size:12
Alignment explanation
Indices: 10093678--10093711 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
10093668 AATTATCTAG
*
10093678 ATTTTTTTTTTA
1 ATTTTTATTTTA
10093690 A-TTTTATTTTA
1 ATTTTTATTTTA
10093701 ATTTTTATTTT
1 ATTTTTATTTT
10093712 GGAGGGCTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
ATTTTTATTTTA
Found at i:10094062 original size:31 final size:31
Alignment explanation
Indices: 10094027--10094095 Score: 97
Period size: 31 Copynumber: 2.2 Consensus size: 31
10094017 AATTTCCAGA
*
10094027 TTCCGGCGGA-AATTCCGGCG-ACTTTTGAATT
1 TTCCGGC-GACAATTCCGGCGAAC-TTTGAAGT
10094058 TTCCGGCGACAATTCCGGCGAACTTTGAAGT
1 TTCCGGCGACAATTCCGGCGAACTTTGAAGT
10094089 TTCCGGC
1 TTCCGGC
10094096 TACAGACCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
30 2 0.06
31 31 0.89
32 2 0.06
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.29
Consensus pattern (31 bp):
TTCCGGCGACAATTCCGGCGAACTTTGAAGT
Found at i:10094189 original size:19 final size:19
Alignment explanation
Indices: 10094161--10094203 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
10094151 TCCGGCCAAT
*
10094161 TTCCGGCGAAATTCCCAGA
1 TTCCGACGAAATTCCCAGA
10094180 TTCCGACGAAATTCCCAGA
1 TTCCGACGAAATTCCCAGA
*
10094199 ATCCG
1 TTCCG
10094204 GCACCAGCGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.28, C:0.33, G:0.19, T:0.21
Consensus pattern (19 bp):
TTCCGACGAAATTCCCAGA
Found at i:10094435 original size:5 final size:5
Alignment explanation
Indices: 10094425--10094458 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
10094415 TTCAGCCCCT
*
10094425 CCGAG CCGAG CCGAG CCGAG CCCAAG CCGAG CCG
1 CCGAG CCGAG CCGAG CCGAG -CCGAG CCGAG CCG
10094459 CGATCCGAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.21, C:0.44, G:0.35, T:0.00
Consensus pattern (5 bp):
CCGAG
Found at i:10094931 original size:152 final size:152
Alignment explanation
Indices: 10094546--10095137 Score: 977
Period size: 152 Copynumber: 3.8 Consensus size: 152
10094536 TTTTTTTTCT
* *
10094546 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTACAAGTAAAAACAGTAGTTTTTCTTGCATACT
1 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGT-GAAACAGTAGTTTTTCTTGCATACT
*
10094611 CCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCC
65 CTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCC
* *
10094676 GATAATTAATTACTTGGCTGATTTTGA
130 ---AA-TAATTAATTGGATGATTTTGA
10094703 TTTTTTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCAT
1 ----TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCAT
*
10094768 ACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTTAATTGAGAATAATT
62 ACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATT
10094833 TCCAATAATTAATTGGATGATTTTGA
127 TCCAATAATTAATTGGATGATTTTGA
*
10094859 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAGGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
* *
10094924 TTGAGGTGAGGGAATTTTCTCAATTTTTTGCTAAAAGTATTAGAGTTAATTGAGAATAATTTCCA
66 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCA
* *
10094989 ATAATTAATTGGATGATTTCGT
131 ATAATTAATTGGATGATTTTGA
* *
10095011 TTTTTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
*
10095076 TTGAGGTGAGGGAATTTTCTCAATTTTTTGCTAAAAGTATTAGAGTCAATTGAGAATAATTT
66 TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTT
10095138 TCAACAACTA
Statistics
Matches: 417, Mismatches: 14, Indels: 9
0.95 0.03 0.02
Matches are distributed among these distances:
152 271 0.65
156 19 0.05
157 2 0.00
160 87 0.21
161 38 0.09
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (152 bp):
TTTTTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
TTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCCA
ATAATTAATTGGATGATTTTGA
Found at i:10100409 original size:15 final size:14
Alignment explanation
Indices: 10100389--10100418 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
10100379 CAGAAATGCT
10100389 AGAGAAGGCTAGAAG
1 AGAGAAGGCTA-AAG
10100404 AGAGAAGGCTAAAG
1 AGAGAAGGCTAAAG
10100418 A
1 A
10100419 AGGAGAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.50, C:0.07, G:0.37, T:0.07
Consensus pattern (14 bp):
AGAGAAGGCTAAAG
Found at i:10105145 original size:7 final size:8
Alignment explanation
Indices: 10105124--10105181 Score: 53
Period size: 8 Copynumber: 6.8 Consensus size: 8
10105114 ACTATGCTTG
10105124 AAAAAAAT
1 AAAAAAAT
10105132 ACAAAAAAAT
1 --AAAAAAAT
10105142 AAAAAAAT
1 AAAAAAAT
10105150 AAAAAAAAT
1 -AAAAAAAT
*
10105159 GAAAAAAT
1 AAAAAAAT
*
10105167 GGAAAAAAT
1 -AAAAAAAT
*
10105176 GAAAAA
1 AAAAAA
10105182 TGATGAAAAA
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
8 21 0.47
9 16 0.36
10 8 0.18
ACGTcount: A:0.81, C:0.02, G:0.07, T:0.10
Consensus pattern (8 bp):
AAAAAAAT
Found at i:10105145 original size:8 final size:9
Alignment explanation
Indices: 10105124--10105165 Score: 59
Period size: 10 Copynumber: 4.6 Consensus size: 9
10105114 ACTATGCTTG
10105124 AAAAAAATA
1 AAAAAAATA
10105133 CAAAAAAAT-
1 -AAAAAAATA
10105142 AAAAAAATA
1 AAAAAAATA
10105151 AAAAAAATGA
1 AAAAAAAT-A
10105161 AAAAA
1 AAAAA
10105166 TGGAAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.27
9 8 0.27
10 14 0.47
ACGTcount: A:0.86, C:0.02, G:0.02, T:0.10
Consensus pattern (9 bp):
AAAAAAATA
Found at i:10105147 original size:17 final size:17
Alignment explanation
Indices: 10105124--10105181 Score: 71
Period size: 17 Copynumber: 3.3 Consensus size: 17
10105114 ACTATGCTTG
10105124 AAAAAAATACAAAAAAAT
1 AAAAAAATA-AAAAAAAT
10105142 AAAAAAATAAAAAAAAT
1 AAAAAAATAAAAAAAAT
* **
10105159 GAAAAAATGGAAAAAAT
1 AAAAAAATAAAAAAAAT
10105176 GAAAAA
1 -AAAAA
10105182 TGATGAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 22 0.63
18 13 0.37
ACGTcount: A:0.81, C:0.02, G:0.07, T:0.10
Consensus pattern (17 bp):
AAAAAAATAAAAAAAAT
Found at i:10105190 original size:17 final size:17
Alignment explanation
Indices: 10105135--10105220 Score: 77
Period size: 17 Copynumber: 4.8 Consensus size: 17
10105125 AAAAAATACA
* **
10105135 AAAAAATAAAAAAATAA
1 AAAAAATGAAAAAATGG
10105152 AAAAAATGAAAAAATGG
1 AAAAAATGAAAAAATGG
10105169 AAAAAATG-AAAAAT-G
1 AAAAAATGAAAAAATGG
10105184 ATGAAAAATGAAAAAAAAATGG
1 A--AAAAATG---AAAAAATGG
10105206 AAAAAATGGAAAAAA
1 AAAAAAT-GAAAAAA
10105221 AGAAAAAGTG
Statistics
Matches: 58, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
15 2 0.03
16 6 0.10
17 29 0.50
18 6 0.10
20 6 0.10
21 7 0.12
22 2 0.03
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.12
Consensus pattern (17 bp):
AAAAAATGAAAAAATGG
Found at i:10105199 original size:9 final size:9
Alignment explanation
Indices: 10105122--10105227 Score: 87
Period size: 9 Copynumber: 11.8 Consensus size: 9
10105112 ATACTATGCT
10105122 TGAAAAAAA
1 TGAAAAAAA
*
10105131 TACAAAAAAA
1 T-GAAAAAAA
10105141 T-AAAAAAA
1 TGAAAAAAA
*
10105149 TAAAAAAAA
1 TGAAAAAAA
10105158 TG-AAAAAA
1 TGAAAAAAA
*
10105166 TGGAAAAAA
1 TGAAAAAAA
10105175 TG--AAAAA
1 TGAAAAAAA
*
10105182 TGATGAAAAA
1 TGA-AAAAAA
10105192 TGAAAAAAAAA
1 TG--AAAAAAA
*
10105203 TGGAAAAAA
1 TGAAAAAAA
10105212 TGGAAAAAAA
1 T-GAAAAAAA
10105222 -GAAAAA
1 TGAAAAA
10105228 GTGAATGAAA
Statistics
Matches: 83, Mismatches: 5, Indels: 19
0.78 0.05 0.18
Matches are distributed among these distances:
7 7 0.08
8 22 0.27
9 24 0.29
10 22 0.27
11 7 0.08
12 1 0.01
ACGTcount: A:0.75, C:0.01, G:0.12, T:0.11
Consensus pattern (9 bp):
TGAAAAAAA
Found at i:10105209 original size:46 final size:47
Alignment explanation
Indices: 10105150--10105239 Score: 148
Period size: 46 Copynumber: 1.9 Consensus size: 47
10105140 ATAAAAAAAT
*
10105150 AAAAAAAATGAAAAAATGGAAAAAATGAAAAA-TG-ATGAAAAATGA
1 AAAAAAAATGAAAAAATGGAAAAAAAGAAAAAGTGAATGAAAAATGA
10105195 AAAAAAAATGGAAAAAATGGAAAAAAAGAAAAAGTGAATGAAAAA
1 AAAAAAAAT-GAAAAAATGGAAAAAAAGAAAAAGTGAATGAAAAA
10105240 GGAGGACTCA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
45 9 0.22
46 22 0.54
47 2 0.05
48 8 0.20
ACGTcount: A:0.72, C:0.00, G:0.17, T:0.11
Consensus pattern (47 bp):
AAAAAAAATGAAAAAATGGAAAAAAAGAAAAAGTGAATGAAAAATGA
Found at i:10105239 original size:37 final size:36
Alignment explanation
Indices: 10105135--10105239 Score: 101
Period size: 37 Copynumber: 2.9 Consensus size: 36
10105125 AAAAAATACA
* *
10105135 AAAAAAT-AAAAA-AATAAAAA-AAATGAAAAAATGG
1 AAAAAATGAAAAAGAAGAAAAATGAATG-AAAAATGG
* **
10105169 AAAAAATGAAAAATGATGAAAAATGAAAAAAAAATGG
1 AAAAAATGAAAAA-GAAGAAAAATGAATGAAAAATGG
10105206 AAAAAATGGAAAAA-AAGAAAAAGTGAATGAAAAA
1 AAAAAAT-GAAAAAGAAGAAAAA-TGAATGAAAAA
10105240 GGAGGACTCA
Statistics
Matches: 57, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
34 7 0.12
35 5 0.09
36 7 0.12
37 30 0.53
38 8 0.14
ACGTcount: A:0.74, C:0.00, G:0.14, T:0.11
Consensus pattern (36 bp):
AAAAAATGAAAAAGAAGAAAAATGAATGAAAAATGG
Found at i:10106300 original size:40 final size:40
Alignment explanation
Indices: 10106245--10106769 Score: 778
Period size: 40 Copynumber: 13.0 Consensus size: 40
10106235 GTCTAGGAGT
10106245 ATTTACTTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTA-TTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
*
10106286 ATTTATTTTCCAAAGTTCGTTGCCTCTGTTTAGA-GAGCA
1 ATTTATTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
*
10106325 ATTTA-CTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
10106365 ATTTATTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
*
10106405 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
10106445 ATTTATTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
*
10106485 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
10106526 ATTTATTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
*
10106566 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCA
10106607 ATTTATTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCAAAGTT-CGTTGCCTCTGTTTAGAGGAGCA
10106648 ATTTATTTTTCCAAAG-TCGTGTTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTT-CAAAGTTC--GTTGCCTCTGTTTAGAGGAGCA
* * *
10106690 ATTTACTTTCCAAAGTCCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTATTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
* *
10106730 ATTTA-CTTTCAAAAG-TCGTTGAGTCTCTGTTTAGAGGAGC
1 ATTTATTTTTC-AAAGTTCGTT--GCCTCTGTTTAGAGGAGC
10106770 TTCGGCCAAA
Statistics
Matches: 448, Mismatches: 17, Indels: 38
0.89 0.03 0.08
Matches are distributed among these distances:
37 4 0.01
38 7 0.02
39 39 0.09
40 216 0.48
41 134 0.30
42 45 0.10
43 3 0.01
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.39
Consensus pattern (40 bp):
ATTTATTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
Found at i:10106560 original size:81 final size:81
Alignment explanation
Indices: 10106245--10106769 Score: 866
Period size: 81 Copynumber: 6.5 Consensus size: 81
10106235 GTCTAGGAGT
*
10106245 ATTTACTTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTTCGTTG
1 ATTTAC-TTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCGTTG
10106308 CCTCTGTTTAGA-GAGCA
64 CCTCTGTTTAGAGGAGCA
10106325 ATTTAC-TTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCGTTGCC
1 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCGTTGCC
10106389 TCTGTTTAGAGGAGCA
66 TCTGTTTAGAGGAGCA
10106405 ATTTACTTTTCAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCGTTGC
1 ATTTACTTTTCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCGTTGC
10106468 CTCTGTTTAGAGGAGCA
65 CTCTGTTTAGAGGAGCA
10106485 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCGTTGCC
1 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCGTTGCC
10106550 TCTGTTTAGAGGAGCA
66 TCTGTTTAGAGGAGCA
10106566 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCCGTTGC
1 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTT-CGTTGC
10106631 CTCTGTTTAGAGGAGCA
65 CTCTGTTTAGAGGAGCA
* * * * *
10106648 ATTTATTTTTCCAAAGTCGTGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCCGTTGC
1 ATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCGTTGC
10106713 CTCTGTTTAGAGGAGCA
65 CTCTGTTTAGAGGAGCA
* * *
10106730 ATTTAC-TTTCAAAAGTCGTTGAGTCTCTGTTTAGAGGAGC
1 ATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAGC
10106770 TTCGGCCAAA
Statistics
Matches: 424, Mismatches: 11, Indels: 19
0.93 0.02 0.04
Matches are distributed among these distances:
77 4 0.01
78 8 0.02
79 57 0.13
80 93 0.22
81 154 0.36
82 64 0.15
83 44 0.10
ACGTcount: A:0.22, C:0.17, G:0.21, T:0.39
Consensus pattern (81 bp):
ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCGTTGCC
TCTGTTTAGAGGAGCA
Found at i:10108664 original size:3 final size:3
Alignment explanation
Indices: 10108656--10108695 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
10108646 GAATTTCATA
*
10108656 TAT TAT TAT TAT TAT TA- TAT TAT TAT TAC TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10108696 ATATAAGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:10108676 original size:17 final size:17
Alignment explanation
Indices: 10108654--10108695 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
10108644 AGGAATTTCA
*
10108654 TATATTATTATTATTAT
1 TATATTATTATTACTAT
10108671 TATATTATTATTACTAT
1 TATATTATTATTACTAT
10108688 TATTATTA
1 TA-TATTA
10108696 ATATAAGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (17 bp):
TATATTATTATTACTAT
Found at i:10108681 original size:20 final size:20
Alignment explanation
Indices: 10108656--10108693 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10108646 GAATTTCATA
*
10108656 TATTATTATTATTATTATAT
1 TATTATTACTATTATTATAT
10108676 TATTATTACTATTATTAT
1 TATTATTACTATTATTAT
10108694 TAATATAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (20 bp):
TATTATTACTATTATTATAT
Found at i:10109147 original size:23 final size:23
Alignment explanation
Indices: 10109093--10109139 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
10109083 GGATGTAACT
10109093 TAACAAATATATATATATATATA
1 TAACAAATATATATATATATATA
*
10109116 TAACAAATATATATGTATATATA
1 TAACAAATATATATATATATATA
10109139 T
1 T
10109140 TTTTAATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
TAACAAATATATATATATATATA
Found at i:10109741 original size:16 final size:16
Alignment explanation
Indices: 10109713--10109765 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
10109703 ATTTAATGAT
10109713 TAAATTA-ATAAAATA
1 TAAATTATATAAAATA
10109728 TAAATTATATAAAATA
1 TAAATTATATAAAATA
* **
10109744 AAAAGGATATAAAAT-
1 TAAATTATATAAAATA
10109759 TAAATTA
1 TAAATTA
10109766 ATTTGACATT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
15 11 0.35
16 20 0.65
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (16 bp):
TAAATTATATAAAATA
Found at i:10110722 original size:18 final size:17
Alignment explanation
Indices: 10110699--10110747 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 17
10110689 AAAATTAATC
10110699 ATATTAAAAATAAATATT
1 ATATTAAAAATAAAT-TT
*
10110717 ATATTAATTAATAAATTT
1 ATATTAA-AAATAAATTT
10110735 ATAATTTAAAAAT
1 AT-A-TTAAAAAT
10110748 TATATTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 11 0.42
19 11 0.42
20 4 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATTAAAAATAAATTT
Found at i:10110777 original size:29 final size:31
Alignment explanation
Indices: 10110732--10110800 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 31
10110722 AATTAATAAA
*
10110732 TTTATAATT-TAAAAATT-ATATTAAAATTTT
1 TTTATAATTATAAAATTTCAT-TTAAAATTTT
*
10110762 TTTA-AATTATAAAATTTCATTTAATATTTT
1 TTTATAATTATAAAATTTCATTTAAAATTTT
10110792 TTTATAATT
1 TTTATAATT
10110801 TAATAACTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 4 0.12
30 24 0.71
31 6 0.18
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (31 bp):
TTTATAATTATAAAATTTCATTTAAAATTTT
Found at i:10113449 original size:24 final size:22
Alignment explanation
Indices: 10113380--10113449 Score: 59
Period size: 24 Copynumber: 3.0 Consensus size: 22
10113370 ATTTTTATCC
10113380 AAATATGCCTTTATTTCTAACAA
1 AAATATGCCTTTATTTCTAA-AA
* ** **
10113403 AAACATTGAATTTATTTAAAAAA
1 AAATA-TGCCTTTATTTCTAAAA
10113426 TGAAATATGCCTTTATTTCTAAAA
1 --AAATATGCCTTTATTTCTAAAA
10113450 CCTTGAATTA
Statistics
Matches: 34, Mismatches: 10, Indels: 5
0.69 0.20 0.10
Matches are distributed among these distances:
23 6 0.18
24 24 0.71
25 4 0.12
ACGTcount: A:0.44, C:0.11, G:0.06, T:0.39
Consensus pattern (22 bp):
AAATATGCCTTTATTTCTAAAA
Found at i:10113549 original size:30 final size:30
Alignment explanation
Indices: 10113462--10113534 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 30
10113452 TTGAATTATG
* * * *
10113462 TTAAGAATTTATTTAAATATATATTAAA-A
1 TTAAAAATTTATTTAAATACAAATTAAATT
*
10113491 ATAAAAATTTATTTAAATACAAATTAAATT
1 TTAAAAATTTATTTAAATACAAATTAAATT
10113521 TTAAAAATTTATTT
1 TTAAAAATTTATTT
10113535 CGATGCAATA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 24 0.65
30 13 0.35
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (30 bp):
TTAAAAATTTATTTAAATACAAATTAAATT
Found at i:10113811 original size:21 final size:21
Alignment explanation
Indices: 10113785--10113828 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
10113775 GACGGGCAGA
10113785 CAATGTGGCCCAAGAAATATC
1 CAATGTGGCCCAAGAAATATC
10113806 CAATGTGGCCCAAGAAATATC
1 CAATGTGGCCCAAGAAATATC
10113827 CA
1 CA
10113829 CGTAATCCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (21 bp):
CAATGTGGCCCAAGAAATATC
Found at i:10117142 original size:19 final size:20
Alignment explanation
Indices: 10117106--10117143 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10117096 TTAACACAAT
10117106 AATCCTTAAAATAAAATAAC
1 AATCCTTAAAATAAAATAAC
*
10117126 AATCCTTATAA-AAAATAA
1 AATCCTTAAAATAAAATAA
10117144 TTGTTAGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (20 bp):
AATCCTTAAAATAAAATAAC
Found at i:10117820 original size:16 final size:16
Alignment explanation
Indices: 10117799--10117833 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
10117789 GATTTAAGGA
10117799 TTTGGATTTGAGGGAT
1 TTTGGATTTGAGGGAT
* *
10117815 TTTGGATTTTAGGGGT
1 TTTGGATTTGAGGGAT
10117831 TTT
1 TTT
10117834 AGAAACTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.34, T:0.51
Consensus pattern (16 bp):
TTTGGATTTGAGGGAT
Found at i:10119177 original size:10 final size:10
Alignment explanation
Indices: 10119162--10119194 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
10119152 AAGAACTCCA
10119162 AGGTGGCTGT
1 AGGTGGCTGT
10119172 AGGTGGCTGT
1 AGGTGGCTGT
10119182 AGGTGGCTGT
1 AGGTGGCTGT
10119192 AGG
1 AGG
10119195 CTGGTGAGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.12, C:0.09, G:0.52, T:0.27
Consensus pattern (10 bp):
AGGTGGCTGT
Found at i:10119342 original size:3 final size:3
Alignment explanation
Indices: 10119336--10119364 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10119326 TTTTTATTAA
10119336 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
10119365 AGTGAAATGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:10119708 original size:22 final size:23
Alignment explanation
Indices: 10119683--10119750 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 23
10119673 AATCAAATTT
* *
10119683 ATGCTTAGAGGTCTTAGA-AATC
1 ATGCTCAGAGGTCTTACAGAATC
*
10119705 ATGCTCGGAGGTCTTACAGAATC
1 ATGCTCAGAGGTCTTACAGAATC
*
10119728 ATAGC-CGGAGGTCTTACAGAATC
1 AT-GCTCAGAGGTCTTACAGAATC
10119751 GATTGGGATA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
22 15 0.37
23 24 0.59
24 2 0.05
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (23 bp):
ATGCTCAGAGGTCTTACAGAATC
Found at i:10119736 original size:23 final size:23
Alignment explanation
Indices: 10119690--10119750 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
10119680 TTTATGCTTA
*
10119690 GAGGTCTTAGA-AATCATGCTCG
1 GAGGTCTTACAGAATCATGCTCG
10119712 GAGGTCTTACAGAATCATAGC-CG
1 GAGGTCTTACAGAATCAT-GCTCG
10119735 GAGGTCTTACAGAATC
1 GAGGTCTTACAGAATC
10119751 GATTGGGATA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
22 10 0.28
23 24 0.67
24 2 0.06
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (23 bp):
GAGGTCTTACAGAATCATGCTCG
Found at i:10119751 original size:132 final size:131
Alignment explanation
Indices: 10119574--10119854 Score: 377
Period size: 133 Copynumber: 2.1 Consensus size: 131
10119564 AATTGAATTT
* *
10119574 ATGCTCAGAGGTCTTAGAAATCATGTCCGGAGGTCTTATAGAATCGACT-GGATAACACCACAAG
1 ATGCTCAGAGGTCTTACAAATCATGTCCGGAGGTCTTACAGAATCGACTGGGATAACACCACAAG
* * **
10119638 TCAAAAGTTAAAGAATCGATCGAGATAACACCGCGAATCAAATTTATGCTTAGAGGTCTTAGAAA
66 TCAAAAGATAAAGAATCGATCGAGATAACACCGCGAATCAAATTTATACCGA-AGGTCTTAGAAA
10119703 TC
130 TC
* * **
10119705 ATGCTCGGAGGTCTTACAGAATCATAG-CCGGAGGTCTTACAGAATCGATTGGGATAACATTACA
1 ATGCTCAGAGGTCTTACA-AATCAT-GTCCGGAGGTCTTACAGAATCGACTGGGATAACACCACA
* * *
10119769 AGTCAAAAGATAAAGAATCGATCGGGATATCACCGCGAATCGAATTTATACCGAAGGTCTTAGAA
64 AGTCAAAAGATAAAGAATCGATCGAGATAACACCGCGAATCAAATTTATACCGAAGGTCTTAGAA
10119834 ATC
129 ATC
* * *
10119837 TTGCCCAAAGGTCTTACA
1 ATGCTCAGAGGTCTTACA
10119855 TAATGAATTG
Statistics
Matches: 130, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
131 16 0.12
132 55 0.42
133 59 0.45
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (131 bp):
ATGCTCAGAGGTCTTACAAATCATGTCCGGAGGTCTTACAGAATCGACTGGGATAACACCACAAG
TCAAAAGATAAAGAATCGATCGAGATAACACCGCGAATCAAATTTATACCGAAGGTCTTAGAAAT
C
Found at i:10119936 original size:109 final size:109
Alignment explanation
Indices: 10119736--10119968 Score: 301
Period size: 109 Copynumber: 2.1 Consensus size: 109
10119726 TCATAGCCGG
* **
10119736 AGGTCTTACAGAATCGATTGGGATAACATTACAAGTCAAAAGATAAAGAATCGATCGGGATATCA
1 AGGTCTTACAGAATCGATTGGAATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATATCA
*
10119801 CCGCGAATCGAATTTATACCGAAGGTCTTAGAAATCTTGCCCAA
66 CCGCGAATCGAATTTATACCAAAGGTCTTAGAAATCTTGCCCAA
*
10119845 AGGTCTTACATAAT-GAATTGGAATAACACCACAAGTCAAAAGAT-AAGAATCGATCGGGATAAT
1 AGGTCTTACAGAATCG-ATTGGAATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGAT-AT
* * * * ** *
10119908 -ACCGTGAATCGAATTTATGCCAAGAGGTCTTAGCAATCATGATCGA
64 CACCGCGAATCGAATTTATACCAA-AGGTCTTAGAAATCTTGCCCAA
*
10119954 AGATCTTACAGAATC
1 AGGTCTTACAGAATC
10119969 ATGCTCGGAG
Statistics
Matches: 106, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
108 37 0.35
109 69 0.65
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.24
Consensus pattern (109 bp):
AGGTCTTACAGAATCGATTGGAATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATATCA
CCGCGAATCGAATTTATACCAAAGGTCTTAGAAATCTTGCCCAA
Found at i:10119969 original size:23 final size:23
Alignment explanation
Indices: 10119942--10119990 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
10119932 AGGTCTTAGC
10119942 AATCATGATCGAAGATCTTACAG
1 AATCATGATCGAAGATCTTACAG
* * * *
10119965 AATCATGCTCGGAGGTTTTACAG
1 AATCATGATCGAAGATCTTACAG
10119988 AAT
1 AAT
10119991 TGAATGGGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (23 bp):
AATCATGATCGAAGATCTTACAG
Found at i:10120018 original size:132 final size:132
Alignment explanation
Indices: 10119845--10120366 Score: 629
Period size: 133 Copynumber: 3.9 Consensus size: 132
10119835 TCTTGCCCAA
* *
10119845 AGGTCTTACATAAT-GAATTGGAATAACACCACAAGTCAAAAGAT-AAGAATCGATCGGGATAAT
1 AGGTCTTACAGAATCGAA-TGGAATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAAC
* * * * *
10119908 ACCGTGAATCGAATTTATGCCAAGAGGTCTTAGCAATCATGATCGAAGATCTTACAGAATCATGC
65 ACCGTGAATCAAATTTATGCC-AGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAGAATCATGC
10119973 TCGG
129 TCGG
* * * * * *
10119977 AGGTTTTACAGAATTGAATGGGATAACACCATAAGTTAAAAGATAAAGAATCGATTGGGATAACA
1 AGGTCTTACAGAATCGAATGGAATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACA
* * * * *
10120042 CCGTGAATCGAATTTATGCCAGAAGGTCTT-GAAAGTTATGCTTGGAGGTCTTAGAG-ATTATGC
66 CCGTGAATCAAATTTATGCCAG-AGGTCTTAGAAA-TCATGCTCGGAGGTCTTACAGAATCATGC
10120105 TCGG
129 TCGG
* * *
10120109 AGGTATTATAGAATCGATTGGAATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACA
1 AGGTCTTACAGAATCGAATGGAATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACA
* * * * * *
10120174 CCGTAAATTAAATTTATGCTCGGAGTTCTTAGAAATCATGCTCGGAGGTCTTACAAAATCATACT
66 CCGTGAATCAAATTTATGC-CAGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAGAATCATGCT
10120239 CGG
130 CGG
* * * * *
10120242 AGGTCTTACAGAATCGACTGGGATAACACCACAAGTCAAAAGATAAAAAATTGATTGGGATAACA
1 AGGTCTTACAGAATCGAATGGAATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACA
* * * * *
10120307 CCGCGAATTAAATTTATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACATAATC
66 CCGTGAATCAAATTTATG-CCAGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAGAATC
10120367 GATTGAAATA
Statistics
Matches: 336, Mismatches: 46, Indels: 15
0.85 0.12 0.04
Matches are distributed among these distances:
132 146 0.43
133 189 0.56
134 1 0.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.25
Consensus pattern (132 bp):
AGGTCTTACAGAATCGAATGGAATAACACCACAAGTCAAAAGATAAAGAATCGATCGGGATAACA
CCGTGAATCAAATTTATGCCAGAGGTCTTAGAAATCATGCTCGGAGGTCTTACAGAATCATGCTC
GG
Found at i:10120090 original size:22 final size:22
Alignment explanation
Indices: 10120065--10120112 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
10120055 TTATGCCAGA
*
10120065 AGGTCTTGAAAG-TTATGCTTGG
1 AGGTCTT-AAAGATTATGCTCGG
*
10120087 AGGTCTTAGAGATTATGCTCGG
1 AGGTCTTAAAGATTATGCTCGG
10120109 AGGT
1 AGGT
10120113 ATTATAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 3 0.13
22 20 0.87
ACGTcount: A:0.23, C:0.10, G:0.33, T:0.33
Consensus pattern (22 bp):
AGGTCTTAAAGATTATGCTCGG
Found at i:10120214 original size:22 final size:23
Alignment explanation
Indices: 10120189--10120256 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
10120179 AATTAAATTT
* *
10120189 ATGCTCGGAGTTCTTA-GAAATC
1 ATGCTCGGAGGTCTTACAAAATC
10120211 ATGCTCGGAGGTCTTACAAAATC
1 ATGCTCGGAGGTCTTACAAAATC
* *
10120234 ATACTCGGAGGTCTTACAGAATC
1 ATGCTCGGAGGTCTTACAAAATC
10120257 GACTGGGATA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
22 15 0.37
23 26 0.63
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (23 bp):
ATGCTCGGAGGTCTTACAAAATC
Found at i:10120378 original size:110 final size:110
Alignment explanation
Indices: 10120211--10120476 Score: 379
Period size: 110 Copynumber: 2.4 Consensus size: 110
10120201 CTTAGAAATC
* * * **
10120211 ATGCTCGGAGGTCTTACAAAATCATACTCGGAGGTCTTACAGAATCGACTGGGATAACACCACAA
1 ATGCTCGGAGGTCTTA-GAAATCATGCCCGGAGGTCTTACAGAATCGACTGAAATAACACCACAA
* * *
10120276 GTCAAAAGATAAAAAATTGATTGGGATAACACCGCGAATTAAATTT
65 GTCAAAAGATAAAAAATCGATTAGGATAACACCGCGAATCAAATTT
* * *
10120322 ATGCCCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACATAATCGATTGAAATAACACCACAAG
1 ATGCTCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGACTGAAATAACACCACAAG
* *
10120387 TCAAAAGATAAAGAATCGATTAGGATAACACTGCGAATCAAATTT
66 TCAAAAGATAAAAAATCGATTAGGATAACACCGCGAATCAAATTT
* * *
10120432 ATGCTCGAAGGTCTTAGAAATCATGCCCGAAGGTCTTACGGAATC
1 ATGCTCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATC
10120477 ATGCCCAGAG
Statistics
Matches: 137, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
110 122 0.89
111 15 0.11
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.23
Consensus pattern (110 bp):
ATGCTCGGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGACTGAAATAACACCACAAG
TCAAAAGATAAAAAATCGATTAGGATAACACCGCGAATCAAATTT
Found at i:10120395 original size:243 final size:243
Alignment explanation
Indices: 10120085--10120611 Score: 721
Period size: 243 Copynumber: 2.2 Consensus size: 243
10120075 AGTTATGCTT
* * * * * *
10120085 GGAGGTCTTAGAGATTATGCTCGGAGGTATTATAGAATCGATTGGAATAACACCACAAGTCAAAA
1 GGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGATTGAAATAACACCACAAGTCAAAA
* * * * *
10120150 GATAAAGAATCGATCGGGATAACACCGTAAATTAAATTTATGCTCGGAGTTCTTAGAAATCATGC
66 GATAAAGAATCGATCAGGATAACACCGCAAATCAAATTTATGCTCGAAGGTCTTAGAAATCATGC
* * * * * **
10120215 TCGGAGGTCTTACAAAATCATACTCGGAGGTCTTACAGAATCGACTGGGATAACACCACAAGTCA
131 CCGAAGGTCTTACAAAATCATACCCAGAGGTCTTACAGAATCAACTGAAATAACACCACAAGTCA
* * * *
10120280 AAAGATAAAAAATTGATTGGGATAACACCGCGAATTAAATTTATGCCC
196 AAAGATAAAAAATCGATCGGGATAACACCGCAAATCAAATTTATGCCC
*
10120328 GGAGGTCTTAGAAATCATGCCCGGAGGTCTTACATAATCGATTGAAATAACACCACAAGTCAAAA
1 GGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGATTGAAATAACACCACAAGTCAAAA
* * *
10120393 GATAAAGAATCGATTAGGATAACACTGCGAATCAAATTTATGCTCGAAGGTCTTAGAAATCATGC
66 GATAAAGAATCGATCAGGATAACACCGCAAATCAAATTTATGCTCGAAGGTCTTAGAAATCATGC
** * * * *
10120458 CCGAAGGTCTTACGGAATCATGCCCAGAGGTCTTATAGAATCAATTGAAATAACACCATAAGTCA
131 CCGAAGGTCTTACAAAATCATACCCAGAGGTCTTACAGAATCAACTGAAATAACACCACAAGTCA
* * *
10120523 AAAGATAAAGAATCGATCGGGATAACACCGTAAATCAAATTTATGCCT
196 AAAGATAAAAAATCGATCGGGATAACACCGCAAATCAAATTTATGCCC
* *
10120571 GGAGGTCTTAAAAATCATACCCGGAGGTCTTACAGAATCGA
1 GGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGA
10120612 AATCTTTGAA
Statistics
Matches: 246, Mismatches: 38, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
243 246 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (243 bp):
GGAGGTCTTAGAAATCATGCCCGGAGGTCTTACAGAATCGATTGAAATAACACCACAAGTCAAAA
GATAAAGAATCGATCAGGATAACACCGCAAATCAAATTTATGCTCGAAGGTCTTAGAAATCATGC
CCGAAGGTCTTACAAAATCATACCCAGAGGTCTTACAGAATCAACTGAAATAACACCACAAGTCA
AAAGATAAAAAATCGATCGGGATAACACCGCAAATCAAATTTATGCCC
Found at i:10120457 original size:22 final size:23
Alignment explanation
Indices: 10120432--10120492 Score: 81
Period size: 23 Copynumber: 2.7 Consensus size: 23
10120422 AATCAAATTT
*
10120432 ATGCTCGAAGGTCTTA-GAAATC
1 ATGCCCGAAGGTCTTACGAAATC
*
10120454 ATGCCCGAAGGTCTTACGGAATC
1 ATGCCCGAAGGTCTTACGAAATC
10120477 ATGCCC-AGAGGTCTTA
1 ATGCCCGA-AGGTCTTA
10120493 TAGAATCAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
22 16 0.46
23 19 0.54
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (23 bp):
ATGCCCGAAGGTCTTACGAAATC
Found at i:10120477 original size:133 final size:133
Alignment explanation
Indices: 10120322--10120609 Score: 409
Period size: 133 Copynumber: 2.2 Consensus size: 133
10120312 AATTAAATTT
* * * *
10120322 ATGCCCGGAGGTCTTA-GAAATCATGCCCGGAGGTCTTACATAATCGATTGAAATAACACCACAA
1 ATGCCCGGAGGTCTTACGGAATCATGCCCAGAGGTCTTACAGAATCAATTGAAATAACACCACAA
* * * *
10120386 GTCAAAAGATAAAGAATCGATTAGGATAACACTGCGAATCAAATTTATG-CTCGAAGGTCTTAGA
66 GTCAAAAGATAAAGAATCGATCAGGATAACACCGCAAATCAAATTTATGCCT-GAAGGTCTTAAA
10120450 AATC
130 AATC
* * *
10120454 ATGCCCGAAGGTCTTACGGAATCATGCCCAGAGGTCTTATAGAATCAATTGAAATAACACCATAA
1 ATGCCCGGAGGTCTTACGGAATCATGCCCAGAGGTCTTACAGAATCAATTGAAATAACACCACAA
* * *
10120519 GTCAAAAGATAAAGAATCGATCGGGATAACACCGTAAATCAAATTTATGCCTGGAGGTCTTAAAA
66 GTCAAAAGATAAAGAATCGATCAGGATAACACCGCAAATCAAATTTATGCCTGAAGGTCTTAAAA
10120584 ATC
131 ATC
* *
10120587 ATACCCGGAGGTCTTACAGAATC
1 ATGCCCGGAGGTCTTACGGAATC
10120610 GAAATCTTTG
Statistics
Matches: 137, Mismatches: 17, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
132 15 0.11
133 120 0.88
134 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (133 bp):
ATGCCCGGAGGTCTTACGGAATCATGCCCAGAGGTCTTACAGAATCAATTGAAATAACACCACAA
GTCAAAAGATAAAGAATCGATCAGGATAACACCGCAAATCAAATTTATGCCTGAAGGTCTTAAAA
ATC
Found at i:10120498 original size:23 final size:23
Alignment explanation
Indices: 10120432--10120500 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
10120422 AATCAAATTT
* *
10120432 ATGCTCGAAGGTCTTAGA-AATC
1 ATGCCCGAAGGTCTTACAGAATC
*
10120454 ATGCCCGAAGGTCTTACGGAATC
1 ATGCCCGAAGGTCTTACAGAATC
*
10120477 ATGCCC-AGAGGTCTTATAGAATC
1 ATGCCCGA-AGGTCTTACAGAATC
10120500 A
1 A
10120501 ATTGAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
22 16 0.40
23 24 0.60
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (23 bp):
ATGCCCGAAGGTCTTACAGAATC
Done.