Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 56 of 100
Found at i:10275658 original size:4 final size:4
Alignment explanation
Indices: 10275627--10275698 Score: 56
Period size: 4 Copynumber: 17.2 Consensus size: 4
10275617 GACTTGATCC
* * *
10275627 TCTT TCTT TTTT TTTT TCTTT TCATT TCTT TCTT TATT TCATT T-TT TCTT
1 TCTT TCTT TCTT TCTT TC-TT TC-TT TCTT TCTT TCTT TC-TT TCTT TCTT
* *
10275677 TTTT TCTT CTCCT TCTT TCTT T
1 TCTT TCTT -TCTT TCTT TCTT T
10275699 TTCATCCTCT
Statistics
Matches: 55, Mismatches: 9, Indels: 8
0.76 0.12 0.11
Matches are distributed among these distances:
3 3 0.05
4 38 0.69
5 14 0.25
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.76
Consensus pattern (4 bp):
TCTT
Found at i:10275706 original size:17 final size:17
Alignment explanation
Indices: 10275672--10275712 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
10275662 ATTTCATTTT
*
10275672 TTCTTTTTTTCTTCTCC
1 TTCTTTCTTTCTTCTCC
10275689 TTCTTTCTTT-TTCATCC
1 TTCTTTCTTTCTTC-TCC
10275706 -TCTTTCT
1 TTCTTTCT
10275713 CTAAACCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 10 0.45
17 12 0.55
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.68
Consensus pattern (17 bp):
TTCTTTCTTTCTTCTCC
Found at i:10276290 original size:15 final size:16
Alignment explanation
Indices: 10276262--10276291 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10276252 GTTTTGGACC
10276262 TGTTGTTCTTTTATTG
1 TGTTGTTCTTTTATTG
10276278 TGTTGTT-TTTTATT
1 TGTTGTTCTTTTATT
10276292 TTTTGCTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.07, C:0.03, G:0.17, T:0.73
Consensus pattern (16 bp):
TGTTGTTCTTTTATTG
Found at i:10282212 original size:139 final size:140
Alignment explanation
Indices: 10281934--10282198 Score: 374
Period size: 139 Copynumber: 1.9 Consensus size: 140
10281924 AAAAACCATT
* * *
10281934 CCTTTTTCAAGAAACAATAATCCACTTTTAAGTGTTTCTAAAACAAAATTATGTACAACACTAAA
1 CCTTTTTCAAGAAACAATAATCCACTTTCAAGAGTTTCTAAAACAAAATTAAGTACAACACTAAA
** *
10281999 GAGACCAAAGACAATATGTGATCAACAATTATGCCTTTCAAGTGCATAATATTATTTTTCAACCT
66 GAGACCAAAGACAATATACGATCAACAATTATGCCTTTCAAGTCCATAATATTATTTTTCAACCT
10282064 AGACTTATTC
131 AGACTTATTC
* * * *
10282074 CCTTTTT-AAGAAATAATAATTCACTTTCAAGAGTTTCTAAAACAAAATTAAGTATAACACTAGA
1 CCTTTTTCAAGAAACAATAATCCACTTTCAAGAGTTTCTAAAACAAAATTAAGTACAACACTAAA
* * *
10282138 GAGACCAAAGATC-ATATACGATCAACAATTATGCCTTTTACA-TCCATAATGTTCTTTTTCA
66 GAGACCAAAGA-CAATATACGATCAACAATTATGCCTTTCA-AGTCCATAATATTATTTTTCA
10282199 TCTTGAATTT
Statistics
Matches: 110, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
139 101 0.92
140 9 0.08
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (140 bp):
CCTTTTTCAAGAAACAATAATCCACTTTCAAGAGTTTCTAAAACAAAATTAAGTACAACACTAAA
GAGACCAAAGACAATATACGATCAACAATTATGCCTTTCAAGTCCATAATATTATTTTTCAACCT
AGACTTATTC
Found at i:10284706 original size:21 final size:21
Alignment explanation
Indices: 10284666--10284706 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10284656 TTTAATAGAA
* *
10284666 ACAATATAAAAGACCTAATTG
1 ACAATATAAAAGAACAAATTG
10284687 ACAATATAAAAGAACAAATT
1 ACAATATAAAAGAACAAATT
10284707 AAAGATAATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.59, C:0.12, G:0.07, T:0.22
Consensus pattern (21 bp):
ACAATATAAAAGAACAAATTG
Found at i:10286449 original size:63 final size:59
Alignment explanation
Indices: 10286339--10286459 Score: 154
Period size: 63 Copynumber: 2.0 Consensus size: 59
10286329 AAGAGTATCA
* * * *
10286339 AATTATATAATATTATAAATAATTTAAAATTTATTTCAGTGCTTTCATATAATAAATAC
1 AATTATATAATAATATAAACAATTAAAAACTTATTTCAGTGCTTTCATATAATAAATAC
10286398 AATTATATAATCTAATATAAACAATTAAAAAACTTATTTTCAGTGAC-TTCATATAATAAATA
1 AATTATATAA--TAATATAAACAATT-AAAAACTTA-TTTCAGTG-CTTTCATATAATAAATA
10286460 GAACCTAATA
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
59 10 0.19
61 12 0.23
62 7 0.13
63 23 0.43
64 1 0.02
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.40
Consensus pattern (59 bp):
AATTATATAATAATATAAACAATTAAAAACTTATTTCAGTGCTTTCATATAATAAATAC
Found at i:10296786 original size:21 final size:21
Alignment explanation
Indices: 10296760--10296830 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
10296750 ATTGGATGAA
*
10296760 TCAATTGATTTAAATTTAGGT
1 TCAATTGATTTAAATTTAGAT
**
10296781 TCAATTTTTTTAAATATTGCATGAAT
1 TCAATTGATTTAAAT-TT--A-G-AT
10296807 T-AATTGATTTAAATTTAGAT
1 TCAATTGATTTAAATTTAGAT
10296827 TCAA
1 TCAA
10296831 ATGTTTACAT
Statistics
Matches: 39, Mismatches: 5, Indels: 12
0.70 0.09 0.21
Matches are distributed among these distances:
20 3 0.08
21 16 0.41
22 3 0.08
24 3 0.08
25 12 0.31
26 2 0.05
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.48
Consensus pattern (21 bp):
TCAATTGATTTAAATTTAGAT
Found at i:10300440 original size:221 final size:222
Alignment explanation
Indices: 10300056--10300505 Score: 776
Period size: 221 Copynumber: 2.0 Consensus size: 222
10300046 AGTTCAAACA
* *
10300056 AATAATAAATTTCCCTGGTAGCTTTCATTCAAGTATTGTGCTTAAAGAAATCAATCTTCTAAATA
1 AATAATAAATTACCCTGGTAGCTTTCATTCAAGTATTGTGCTTAAAGAAATCAACCTTCTAAATA
* *
10300121 AATTAAATATTTGCAATATTCCTCATCATCCCTTAGAAAGTCTTTGATGACATGTGCTTTAGTTC
66 AATTAAATATTTGCAATATTCCTCATCATCCCTTAAAAAGTCTTTGATGACATATGCTTTAGTTC
* *
10300186 AAAATTTTCACGCTTTAGATGTCAACTTAATTAATTAAGTAAGGAATATAAGATCATTTCGATTG
131 AAAATTTTCACACTTTAGATGTCAAATTAATTAATTAAGTAAGGAATATAAGATCATTTCGATTG
10300251 ACCAAAAAAAGGAACATAAGATCTTGT
196 ACCAAAAAAAGGAACATAAGATCTTGT
* *
10300278 AATAATAAGTTACCCTGGTAGCTTTCATTCAAGTATTGTGCTT-AAGAAATCAACCTTCTAAGTA
1 AATAATAAATTACCCTGGTAGCTTTCATTCAAGTATTGTGCTTAAAGAAATCAACCTTCTAAATA
10300342 AATTAAATATTTGCAATATTCCTCATCATCCCTTAAAAAGTCTTTGATGACATATGCTTTAGTTC
66 AATTAAATATTTGCAATATTCCTCATCATCCCTTAAAAAGTCTTTGATGACATATGCTTTAGTTC
* *
10300407 AAAATTTTCACACTTTAGATGTCAAATTAATTAATTAAGTAAGGAGTATAAGATCTTTTCGATTG
131 AAAATTTTCACACTTTAGATGTCAAATTAATTAATTAAGTAAGGAATATAAGATCATTTCGATTG
* *
10300472 ACCAAAAAAATGAATATAAGATCTTGT
196 ACCAAAAAAAGGAACATAAGATCTTGT
*
10300499 AAAAATA
1 AATAATA
10300506 TCGAGTTCTA
Statistics
Matches: 215, Mismatches: 13, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
221 174 0.81
222 41 0.19
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (222 bp):
AATAATAAATTACCCTGGTAGCTTTCATTCAAGTATTGTGCTTAAAGAAATCAACCTTCTAAATA
AATTAAATATTTGCAATATTCCTCATCATCCCTTAAAAAGTCTTTGATGACATATGCTTTAGTTC
AAAATTTTCACACTTTAGATGTCAAATTAATTAATTAAGTAAGGAATATAAGATCATTTCGATTG
ACCAAAAAAAGGAACATAAGATCTTGT
Found at i:10303413 original size:347 final size:346
Alignment explanation
Indices: 10302806--10303452 Score: 996
Period size: 347 Copynumber: 1.9 Consensus size: 346
10302796 GAACGATATC
* *
10302806 AATTAAACATGGATAATCCTTTAATTTTGACAATACGATTTTCATTATATTTAAATTTAATTTCT
1 AATTAAACATGGATAATCATTTAATTTTGACAATACGATTTTCATTATATTTAAATTTAATTTCC
*
10302871 TTAAATTTATTTATGAAAAAAATATTTTTTTTGTTGTGAAGTTAGTATTACTATTATTTTCATAT
66 TCAAATTTATTTATGAAAAAAATA-TTTTTTTGTTGTGAAGTTAGTATTACTATTATTTTCATAT
* *
10302936 TATATAAATTTTTCAACGCTTTAGTAAAATTTATAGAAAATCTTTATTTAGAAAATATTTCGAGA
130 TATATAAATTTTTCAACGCTTTAGTAAAATTTATAGAAAATCTTTATTTAGAAAATATTTCAAAA
* ** * *
10303001 AAATTAACCGGTCACAAAATTTTTGAAATTTCGTCATAAATTATTTTATTTGTTTACTAAAAATG
195 AAATTAACCAGTCACAAAATTTTCAAAATTTCATCATAAAATATTTTATTTGTTTACTAAAAATG
* *
10303066 ATTTTAGAATTATCCTAACTCTTTCGCGAAATCTCAAAATGAAAAGGCTATTAGCACCCTCACAT
260 ATTCTAGAATTATCCTAACTCTTTCGCGAAATATCAAAATGAAAAGGCTATTAGCACCCTCACAT
10303131 CACTTGTTCAAAAAATGGTACT
325 CACTTGTTCAAAAAATGGTACT
* * *
10303153 AATTAAATATGTG-TAATCATTTAATTTTGACAATATGGTTTTCATTATATTTAAATTTAATTTC
1 AATTAAACATG-GATAATCATTTAATTTTGACAATACGATTTTCATTATATTTAAATTTAATTTC
* *
10303217 CTCAAATTTATTTATGAAAAAAATA-TTTTTTGTTGTGAAGTTAATATTATTATTATTATTTTCA
65 CTCAAATTTATTTATGAAAAAAATATTTTTTTGTTGTGAAG-T--TAGTATTACTATTATTTTCA
*
10303281 TATTCTATAAA-TTTTCTAACGCTTTAGTAAAATTTATAGAAAATCTTTATTTAGAAAATATTTC
127 TATTATATAAATTTTTC-AACGCTTTAGTAAAATTTATAGAAAATCTTTATTTAGAAAATATTTC
* * *
10303345 AAAAAAATTGACCATTCACAAAATTTTCAAAATTTCATCATAAAAT-TTTTATTTGTTTATTAAA
191 AAAAAAATTAACCAGTCACAAAATTTTCAAAATTTCATCATAAAATATTTTATTTGTTTACTAAA
* * *
10303409 AATGATTCTAGAATTATCTTGACTCTTTGGCGAAATATCAAAAT
256 AATGATTCTAGAATTATCCTAACTCTTTCGCGAAATATCAAAAT
10303453 TTTATTAAAC
Statistics
Matches: 271, Mismatches: 24, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
345 15 0.06
346 1 0.00
347 142 0.52
348 113 0.42
ACGTcount: A:0.38, C:0.10, G:0.08, T:0.44
Consensus pattern (346 bp):
AATTAAACATGGATAATCATTTAATTTTGACAATACGATTTTCATTATATTTAAATTTAATTTCC
TCAAATTTATTTATGAAAAAAATATTTTTTTGTTGTGAAGTTAGTATTACTATTATTTTCATATT
ATATAAATTTTTCAACGCTTTAGTAAAATTTATAGAAAATCTTTATTTAGAAAATATTTCAAAAA
AATTAACCAGTCACAAAATTTTCAAAATTTCATCATAAAATATTTTATTTGTTTACTAAAAATGA
TTCTAGAATTATCCTAACTCTTTCGCGAAATATCAAAATGAAAAGGCTATTAGCACCCTCACATC
ACTTGTTCAAAAAATGGTACT
Found at i:10303496 original size:52 final size:51
Alignment explanation
Indices: 10303417--10303525 Score: 123
Period size: 52 Copynumber: 2.1 Consensus size: 51
10303407 AAAATGATTC
*** *
10303417 TAGAATTATCTTGACTCTTTGGCGAAATATC-AAAATTTTATTAAACT-AATTT
1 TAGAATTATCTTGACTCTTCAACGAAAT-TCTAAAAATTT-TTAAA-TAAATTT
* *
10303469 TAGAATTATCTTGTCTCTTCAATGAAATTCTAAAAATTTTTAAATAAATTT
1 TAGAATTATCTTGACTCTTCAACGAAATTCTAAAAATTTTTAAATAAATTT
10303520 TAGAAT
1 TAGAAT
10303526 CATCACAACT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
50 1 0.02
51 18 0.37
52 30 0.61
ACGTcount: A:0.39, C:0.10, G:0.08, T:0.43
Consensus pattern (51 bp):
TAGAATTATCTTGACTCTTCAACGAAATTCTAAAAATTTTTAAATAAATTT
Found at i:10303911 original size:3 final size:3
Alignment explanation
Indices: 10303903--10303937 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
10303893 ACTTGTAATG
10303903 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
10303938 ATTTTAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:10303980 original size:12 final size:12
Alignment explanation
Indices: 10303965--10304004 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
10303955 AAAAAATAAC
10303965 AAAAATAAAATA
1 AAAAATAAAATA
*
10303977 AAAAA-GAAATCA
1 AAAAATAAAAT-A
10303989 AAAAATAAAATA
1 AAAAATAAAATA
10304001 AAAA
1 AAAA
10304005 TGGAAAAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 4 0.17
12 16 0.67
13 4 0.17
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.12
Consensus pattern (12 bp):
AAAAATAAAATA
Found at i:10304930 original size:30 final size:28
Alignment explanation
Indices: 10304878--10304951 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 28
10304868 GTAAAACATG
10304878 AAAA-AAAGAAGAAAAAAATGTCAAA-AA
1 AAAAGAAAGAA-AAAAAAATGTCAAAGAA
*
10304905 GAATAGAAAGAAAACAAAAAGTGTCAAAGAA
1 -AAAAGAAAGAAAA-AAAAA-TGTCAAAGAA
10304936 AAAAGAAATGAAAAAA
1 AAAAGAAA-GAAAAAA
10304952 TATATAATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
28 5 0.13
29 11 0.28
30 16 0.41
31 7 0.18
ACGTcount: A:0.73, C:0.04, G:0.15, T:0.08
Consensus pattern (28 bp):
AAAAGAAAGAAAAAAAAATGTCAAAGAA
Found at i:10305170 original size:42 final size:41
Alignment explanation
Indices: 10305107--10305209 Score: 93
Period size: 42 Copynumber: 2.4 Consensus size: 41
10305097 TTTTTTAAAG
* *
10305107 AAAAA-TTGAAAGACTCATCTAAACAAAGGCTTGC-CAACTTTT
1 AAAAATTTAAAAG-CTCCTCTAAACAAAGG-TT-CACAACTTTT
* * * *
10305149 AAAAATTTAAAAGCTCCTCTAAGCAGATGTTCAATAACTTTT
1 AAAAATTTAAAAGCTCCTCTAAACAAAGGTTC-ACAACTTTT
10305191 AAAAATCTTAAAAGCTCCT
1 AAAAAT-TTAAAAGCTCCT
10305210 ATAGGTAGAG
Statistics
Matches: 51, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
40 1 0.02
41 2 0.04
42 30 0.59
43 18 0.35
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.29
Consensus pattern (41 bp):
AAAAATTTAAAAGCTCCTCTAAACAAAGGTTCACAACTTTT
Found at i:10305553 original size:32 final size:32
Alignment explanation
Indices: 10305479--10305574 Score: 102
Period size: 32 Copynumber: 3.0 Consensus size: 32
10305469 TTTGATGGAT
* * * * *
10305479 TCCTCTTACTAGAGGCTCTCAAAATTAGAAAGC
1 TCCTCTGACTAGAGGCTATGAAACTT-TAAAGC
* *
10305512 TCATTTGACTAGAGGCTATGAAACTTTAAAGC
1 TCCTCTGACTAGAGGCTATGAAACTTTAAAGC
* *
10305544 TCCTCTGACTAGAGGCAATGACACTTTAAAG
1 TCCTCTGACTAGAGGCTATGAAACTTTAAAG
10305575 AAAGCTCCTT
Statistics
Matches: 52, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 32 0.62
33 20 0.38
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (32 bp):
TCCTCTGACTAGAGGCTATGAAACTTTAAAGC
Found at i:10305593 original size:36 final size:36
Alignment explanation
Indices: 10305505--10305631 Score: 129
Period size: 32 Copynumber: 3.6 Consensus size: 36
10305495 TCTCAAAATT
* * *
10305505 AGAAAGCTCATTTGACTAGAGGCTATGAAACTTT--
1 AGAAAGCTCCTTTGACTAGAGGCAATGACACTTTAA
*
10305539 --AAAGCTCCTCTGACTAGAGGCAATGACACTTTAA
1 AGAAAGCTCCTTTGACTAGAGGCAATGACACTTTAA
* * *
10305573 AGAAAGCTCCTTTGAGTAGA-GAATATGGCACTTTTAA
1 AGAAAGCTCCTTTGACTAGAGGCA-ATGACAC-TTTAA
*
10305610 AGAAAGCTTCTTTGACTAGAGG
1 AGAAAGCTCCTTTGACTAGAGG
10305632 TAATAAAAAT
Statistics
Matches: 76, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
32 28 0.37
35 2 0.03
36 22 0.29
37 23 0.30
38 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (36 bp):
AGAAAGCTCCTTTGACTAGAGGCAATGACACTTTAA
Found at i:10317503 original size:10 final size:11
Alignment explanation
Indices: 10317488--10317516 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
10317478 CTCTTCAATG
10317488 AAATTTTAAA-
1 AAATTTTAAAT
10317498 AAATTTTAAAT
1 AAATTTTAAAT
10317509 AAATTTTA
1 AAATTTTA
10317517 GTATCATCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
AAATTTTAAAT
Found at i:10317895 original size:3 final size:3
Alignment explanation
Indices: 10317887--10317918 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
10317877 TAATGATTTT
10317887 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
10317919 GTTTAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:10318292 original size:21 final size:20
Alignment explanation
Indices: 10318268--10318310 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
10318258 AACTTTCCAT
10318268 ATTTCGGTAATCGAAAAACTC
1 ATTT-GGTAATCGAAAAACTC
** *
10318289 ATTTGGTCGTCGAAAAATTC
1 ATTTGGTAATCGAAAAACTC
10318309 AT
1 AT
10318311 CGATTATCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (20 bp):
ATTTGGTAATCGAAAAACTC
Found at i:10318933 original size:3 final size:3
Alignment explanation
Indices: 10318927--10318961 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
10318917 TGAAAAAAAT
10318927 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
10318962 TTTATTTAAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:10320818 original size:39 final size:39
Alignment explanation
Indices: 10320760--10320857 Score: 117
Period size: 39 Copynumber: 2.5 Consensus size: 39
10320750 GATTACTTAA
*
10320760 TTGTTGATTACATCCAAAATCACAACAAAAA-CTATCAT
1 TTGTTGATTATATCCAAAATCACAACAAAAAGCTATCAT
* ** *
10320798 TGTGTTGATTATATCTAAAATTTCAACAAAAAGTTATCAT
1 T-TGTTGATTATATCCAAAATCACAACAAAAAGCTATCAT
* *
10320838 TTTTTTATTATATCCAAAAT
1 TTGTTGATTATATCCAAAAT
10320858 AAAAAAAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.02
39 42 0.84
40 7 0.14
ACGTcount: A:0.41, C:0.14, G:0.06, T:0.39
Consensus pattern (39 bp):
TTGTTGATTATATCCAAAATCACAACAAAAAGCTATCAT
Found at i:10327676 original size:16 final size:16
Alignment explanation
Indices: 10327649--10327687 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
10327639 ATATTTTATT
10327649 AATAAATATAAAAAATC
1 AATAAATAT-AAAAATC
*
10327666 AA-AAATTTAAAAATC
1 AATAAATATAAAAATC
10327681 AATAAAT
1 AATAAAT
10327688 GAAACTGATC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
15 9 0.45
16 9 0.45
17 2 0.10
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (16 bp):
AATAAATATAAAAATC
Found at i:10329296 original size:14 final size:14
Alignment explanation
Indices: 10329273--10329303 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
10329263 AATAATTTCC
10329273 TTTATGTTTTTATT
1 TTTATGTTTTTATT
*
10329287 TTTATTTTTTTATT
1 TTTATGTTTTTATT
10329301 TTT
1 TTT
10329304 CTTGATATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.03, T:0.84
Consensus pattern (14 bp):
TTTATGTTTTTATT
Found at i:10330834 original size:22 final size:22
Alignment explanation
Indices: 10330809--10330851 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
10330799 TTTTTTGTCT
10330809 TTAATTCTA-AGGATACAAATAC
1 TTAATTCTAGA-GATACAAATAC
10330831 TTAATTCTAGAGATACAAATA
1 TTAATTCTAGAGATACAAATA
10330852 TAAATATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.33
Consensus pattern (22 bp):
TTAATTCTAGAGATACAAATAC
Found at i:10333939 original size:22 final size:22
Alignment explanation
Indices: 10333914--10333982 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 22
10333904 ATAGTTTAGT
10333914 CAATCCTTCTCCTTAGCAAGTC
1 CAATCCTTCTCCTTAGCAAGTC
* **
10333936 CAA---TTCT--ATAGTTTAGTC
1 CAATCCTTCTCCTTAG-CAAGTC
10333954 C-ATCCTTCTCCTTAGCAAGTC
1 CAATCCTTCTCCTTAGCAAGTC
10333975 CAATCCTT
1 CAATCCTT
10333983 TCTCTGAACT
Statistics
Matches: 34, Mismatches: 6, Indels: 14
0.63 0.11 0.26
Matches are distributed among these distances:
17 4 0.12
18 5 0.15
19 4 0.12
20 4 0.12
21 5 0.15
22 12 0.35
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (22 bp):
CAATCCTTCTCCTTAGCAAGTC
Found at i:10333959 original size:39 final size:39
Alignment explanation
Indices: 10333904--10333978 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
10333894 GTGTCTCAAG
10333904 ATAGTTTAGTCAATCCTTCTCCTTAGCAAGTCCAATTCT
1 ATAGTTTAGTCAATCCTTCTCCTTAGCAAGTCCAATTCT
*
10333943 ATAGTTTAGTCCATCCTTCTCCTTAGCAAGTCCAAT
1 ATAGTTTAGTCAATCCTTCTCCTTAGCAAGTCCAAT
10333979 CCTTTCTCTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.25, C:0.27, G:0.11, T:0.37
Consensus pattern (39 bp):
ATAGTTTAGTCAATCCTTCTCCTTAGCAAGTCCAATTCT
Found at i:10334934 original size:22 final size:22
Alignment explanation
Indices: 10334909--10334952 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
10334899 ATTTTTTGTC
*
10334909 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
*
10334931 CTTAATTCTAGATATACAAATA
1 CTTAATTCTAGAGATACAAATA
10334953 TATAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:10335515 original size:2 final size:2
Alignment explanation
Indices: 10335508--10335537 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10335498 GGGACGCATG
10335508 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
10335538 ATTCTGCCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:10336824 original size:3 final size:3
Alignment explanation
Indices: 10336816--10336858 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
10336806 CAAAAGAAAC
10336816 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10336859 ATTTGAGTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10343114 original size:13 final size:13
Alignment explanation
Indices: 10343096--10343120 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10343086 AACATAATTG
10343096 AGTCATTCCTTAA
1 AGTCATTCCTTAA
10343109 AGTCATTCCTTA
1 AGTCATTCCTTA
10343121 GAGATATGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (13 bp):
AGTCATTCCTTAA
Found at i:10349364 original size:32 final size:33
Alignment explanation
Indices: 10349307--10349371 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
10349297 CCTTAGTCAA
10349307 AAGGTTAATATAATTAAAAAAAAATTAATGATG
1 AAGGTTAATATAATTAAAAAAAAATTAATGATG
*
10349340 AAGGTTAGTATAATT-AAAAAAAATTAATGATG
1 AAGGTTAATATAATTAAAAAAAAATTAATGATG
10349372 TATTTAAAGC
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 17 0.55
33 14 0.45
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (33 bp):
AAGGTTAATATAATTAAAAAAAAATTAATGATG
Found at i:10358691 original size:289 final size:288
Alignment explanation
Indices: 10358172--10358742 Score: 989
Period size: 289 Copynumber: 2.0 Consensus size: 288
10358162 CTCACGATAA
*
10358172 TTATTTAGTGCAATTTAGCATCTTTCTCCACTAGGGCTTCTAGCCCTATGTCATTTCACTATTGG
1 TTATTTAGTGCAATTTAGCATCTTTATCCACTAGGGCTTCTAGCCCTATGTCATTTCACTATTGG
** * *
10358237 GGGAGGATTGTAGAAATCCTTACCTTTTTTTCGACTGAGAAAGAAGGATGAGTCTCTCTTACTTC
66 GGGAGGATTGTAGAAATCCTTACCTTTTTAACGACCGAGAAAGAAGGATGAGTCTCTATTACTTC
* *
10358302 GGTTAGTTTTTATTATAACTTTAGCATTAATGTATTTCTCTATTATTTACATGACGTCAGCTAGA
131 GGTTAGTTTTCATTATAACTTTAGCATTAATGTATTTCTCTATTATTTACATGACGTCAACTAGA
10358367 GTTTTAAGTGGTTCTAGTGACAATGTCAGCTTTAAATAGTACTCTTTATTGTTAAGTCCACTTGT
196 GTTTTAAGTGGTTCTAGTGACAATGTCAGCTTTAAATAGTACTCTTTATTGTTAAGTCCAC-TGT
*
10358432 CAGTGAGACAATAATGATCATTTCACTCT
260 CAGTGAGACAATAATGATAATTTCACTCT
* *
10358461 TTATTTAGTGCAATTTAGCTTCTTTATCCACTAGGGCTTCTAGCCCTATGTCATTTCACTCTTGG
1 TTATTTAGTGCAATTTAGCATCTTTATCCACTAGGGCTTCTAGCCCTATGTCATTTCACTATTGG
10358526 GGGAGGATTGTAGAAATCCTTACCTTTTTAACGACCGAGAAAGAAGGATGAGTCTCTATTACTTC
66 GGGAGGATTGTAGAAATCCTTACCTTTTTAACGACCGAGAAAGAAGGATGAGTCTCTATTACTTC
* *
10358591 GGTTAGTTTTCATTATAACTTTAGCATTAATGTATTTCTCTATTATTTGCATGACGTCAACTATA
131 GGTTAGTTTTCATTATAACTTTAGCATTAATGTATTTCTCTATTATTTACATGACGTCAACTAGA
* * *
10358656 GTTTTAAGTGGTTTTAGTGACAATGTCAGCTTTAAATGGTACTCTTTATTGTTAAGTCCACTGTT
196 GTTTTAAGTGGTTCTAGTGACAATGTCAGCTTTAAATAGTACTCTTTATTGTTAAGTCCACTGTC
*
10358721 AGTGAGACAATAGTGATAATTT
261 AGTGAGACAATAATGATAATTT
10358743 GTTCTTAGTT
Statistics
Matches: 266, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
288 23 0.09
289 243 0.91
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (288 bp):
TTATTTAGTGCAATTTAGCATCTTTATCCACTAGGGCTTCTAGCCCTATGTCATTTCACTATTGG
GGGAGGATTGTAGAAATCCTTACCTTTTTAACGACCGAGAAAGAAGGATGAGTCTCTATTACTTC
GGTTAGTTTTCATTATAACTTTAGCATTAATGTATTTCTCTATTATTTACATGACGTCAACTAGA
GTTTTAAGTGGTTCTAGTGACAATGTCAGCTTTAAATAGTACTCTTTATTGTTAAGTCCACTGTC
AGTGAGACAATAATGATAATTTCACTCT
Found at i:10360479 original size:17 final size:16
Alignment explanation
Indices: 10360453--10360502 Score: 64
Period size: 17 Copynumber: 3.0 Consensus size: 16
10360443 CTGAAATTTT
10360453 TTAAAATTTAAAATTA
1 TTAAAATTTAAAATTA
*
10360469 TTAAAATTTTAATATTA
1 TTAAAA-TTTAAAATTA
*
10360486 TTAAGAATATAAAATTA
1 TTAA-AATTTAAAATTA
10360503 AAATTAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
16 6 0.21
17 21 0.72
18 2 0.07
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (16 bp):
TTAAAATTTAAAATTA
Found at i:10370444 original size:15 final size:16
Alignment explanation
Indices: 10370424--10370453 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
10370414 GAAAGTTCAT
10370424 TTTTATTATT-TTTTG
1 TTTTATTATTATTTTG
10370439 TTTTATTATTATTTT
1 TTTTATTATTATTTT
10370454 TTAAAGTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (16 bp):
TTTTATTATTATTTTG
Found at i:10371627 original size:18 final size:18
Alignment explanation
Indices: 10371615--10371662 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 18
10371605 AATTTTATAT
10371615 TATTATTATATTTAATAA
1 TATTATTATATTTAATAA
*
10371633 TATTATTATTATCTTATTAA
1 TATTATTA-TAT-TTAATAA
10371653 TATTTATTAT
1 TA-TTATTAT
10371663 TTAATAGCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 8 0.31
19 3 0.12
20 9 0.35
21 6 0.23
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
TATTATTATATTTAATAA
Found at i:10371635 original size:21 final size:20
Alignment explanation
Indices: 10371611--10371663 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
10371601 TAATAATTTT
*
10371611 ATATTATTATTATATTTAATA
1 ATATTATTATTAT-CTTAATA
*
10371632 ATATTATTATTATCTTATTA
1 ATATTATTATTATCTTAATA
10371652 ATATTTATTATT
1 ATA-TTATTATT
10371664 TAATAGCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 8 0.28
21 21 0.72
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
ATATTATTATTATCTTAATA
Found at i:10375511 original size:17 final size:16
Alignment explanation
Indices: 10375485--10375534 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
10375475 CTAAAATTTT
10375485 TTAAAATTTAAAATTA
1 TTAAAATTTAAAATTA
10375501 TTAAAATTTTAATAA-TA
1 TTAAAA-TTTAA-AATTA
*
10375518 TTAAGAATATAAAATTA
1 TTAA-AATTTAAAATTA
10375535 AAATTAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
16 8 0.28
17 17 0.59
18 4 0.14
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (16 bp):
TTAAAATTTAAAATTA
Found at i:10376994 original size:24 final size:24
Alignment explanation
Indices: 10376945--10377005 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
10376935 AATTTAAATA
*
10376945 ATATTATTTTTATATAGTTTATTT
1 ATATTATTTTTATATAGTTCATTT
10376969 ATATTATTTTTATATCA-TATCA-TT
1 ATATTATTTTTATAT-AGT-TCATTT
10376993 ATATTATATTTTA
1 ATATTAT-TTTTA
10377006 AATTATCATA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
24 25 0.76
25 8 0.24
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (24 bp):
ATATTATTTTTATATAGTTCATTT
Found at i:10377665 original size:23 final size:23
Alignment explanation
Indices: 10377639--10377683 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
10377629 ATTTTTAATC
*
10377639 AAATTTATAAATATTTAT-TTTAA
1 AAATCTATAAA-ATTTATATTTAA
10377662 AAATCTATAAAATTTATATTTA
1 AAATCTATAAAATTTATATTTA
10377684 TTTATTGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (23 bp):
AAATCTATAAAATTTATATTTAA
Found at i:10378814 original size:17 final size:17
Alignment explanation
Indices: 10378756--10378834 Score: 60
Period size: 18 Copynumber: 4.6 Consensus size: 17
10378746 AATTATTTAT
10378756 TATTAAAAT--TATTAA
1 TATTAAAATAATATTAA
10378771 TATTCAAGAAT-A-ATTATA
1 TATT-AA-AATAATATTA-A
*
10378789 TTTTAAAAATAATATTAA
1 TATT-AAAATAATATTAA
10378807 TATTAAAATATTATATTAA
1 TATTAAAATA--ATATTAA
10378826 TA-TAAAATA
1 TATTAAAATA
10378835 CTTAAAATAA
Statistics
Matches: 53, Mismatches: 3, Indels: 13
0.77 0.04 0.19
Matches are distributed among these distances:
15 4 0.08
16 2 0.04
17 16 0.30
18 18 0.34
19 13 0.25
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (17 bp):
TATTAAAATAATATTAA
Found at i:10378822 original size:19 final size:19
Alignment explanation
Indices: 10378791--10378834 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
10378781 TAATTATATT
10378791 TTAAAA-ATAATATTAATA
1 TTAAAATATAATATTAATA
*
10378809 TTAAAATATTATATTAATA
1 TTAAAATATAATATTAATA
10378828 -TAAAATA
1 TTAAAATA
10378835 CTTAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (19 bp):
TTAAAATATAATATTAATA
Found at i:10379183 original size:38 final size:41
Alignment explanation
Indices: 10379139--10379217 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
10379129 AAGAAATAAC
*
10379139 ATTATTATATTAT-TTAACATTAATTATTAAAATAATAAAAT
1 ATTATCATA-TATGTTAACATTAATTATTAAAATAATAAAAT
** **
10379180 ATTATCATATATGTTATTATTTGTTATTAAAATAATAA
1 ATTATCATATATGTTAACATTAATTATTAAAATAATAA
10379218 TAAAATGGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
40 3 0.09
41 29 0.91
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.48
Consensus pattern (41 bp):
ATTATCATATATGTTAACATTAATTATTAAAATAATAAAAT
Found at i:10379664 original size:20 final size:20
Alignment explanation
Indices: 10379624--10379664 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
10379614 TTTAAGTAAA
10379624 ATTAAATAAAAATATTATTT
1 ATTAAATAAAAATATTATTT
*
10379644 ATTAATATAATAATATT-TTT
1 ATTAA-ATAAAAATATTATTT
10379664 A
1 A
10379665 ATTCGATCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
ATTAAATAAAAATATTATTT
Found at i:10380514 original size:87 final size:88
Alignment explanation
Indices: 10380353--10380523 Score: 222
Period size: 87 Copynumber: 1.9 Consensus size: 88
10380343 TGAAGCACGA
* * ** *
10380353 GTTTGGATGACTAGTTGTAATTTTAGATTTCTTCTTTTTTATTCCCTTTGATTAAAACTTCAATC
1 GTTTGGATGACAACTTACAATTTTAAATTTCTTCTTTTTTATT-CCTTTGATTAAAACTTCAATC
*
10380418 TTATAATTTTCTCAAATATTTAGG
65 TTATAATTTTCGCAAATATTTAGG
* *
10380442 GTTTGGATGACAACTTACAATTTTAAATTTTTTCTTATTTT-TT-CTTTGATTACAACATT-AAT
1 GTTTGGATGACAACTTACAATTTTAAATTTCTTCTT-TTTTATTCCTTTGATTAAAAC-TTCAAT
10380504 CTTATAATTTTCGCAAATAT
64 CTTATAATTTTCGCAAATAT
10380524 ATATGTGATT
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
87 34 0.47
88 2 0.03
89 32 0.44
90 4 0.06
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.50
Consensus pattern (88 bp):
GTTTGGATGACAACTTACAATTTTAAATTTCTTCTTTTTTATTCCTTTGATTAAAACTTCAATCT
TATAATTTTCGCAAATATTTAGG
Found at i:10381262 original size:29 final size:29
Alignment explanation
Indices: 10381209--10381264 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
10381199 ACTAATCAAT
*
10381209 TAAACAATTCAAATCAACATAAATAAAGC
1 TAAACAATTCAAATCAACACAAATAAAGC
10381238 TAAACAA-TC-AATCAACTACACAATAAA
1 TAAACAATTCAAATCAAC-ACA-AATAAA
10381265 CAGTAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
27 7 0.29
28 4 0.17
29 13 0.54
ACGTcount: A:0.59, C:0.20, G:0.02, T:0.20
Consensus pattern (29 bp):
TAAACAATTCAAATCAACACAAATAAAGC
Found at i:10391535 original size:2 final size:2
Alignment explanation
Indices: 10391530--10391557 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10391520 TTTTTTTAAG
10391530 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10391558 GAGAGAGAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10392503 original size:30 final size:30
Alignment explanation
Indices: 10392433--10392493 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
10392423 CAACCCATTT
* * *
10392433 AAAATAAGAGTTTATTTGAGTATAAATTAA
1 AAAATAAAAATTTATTTGAGTACAAATTAA
10392463 AAAATAAAAATTTATTTTGA-TACAAATTAA
1 AAAATAAAAATTTA-TTTGAGTACAAATTAA
10392493 A
1 A
10392494 GTAAAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.36
Consensus pattern (30 bp):
AAAATAAAAATTTATTTGAGTACAAATTAA
Found at i:10394679 original size:66 final size:66
Alignment explanation
Indices: 10394563--10394701 Score: 167
Period size: 66 Copynumber: 2.1 Consensus size: 66
10394553 GAGATGCAGA
* * *
10394563 GGAACATGAAAAGGTTGAAAGGGAACATATAAGGAATAAAAGGCCGATTGTTAGTGGAAATATAA
1 GGAACATGAAAAGGTTGAAAGGGAACATATAAAGAATAAAAGACCAATTGTTAGTGGAAATATAA
10394628 T
66 T
* * * *
10394629 GGAACAT-ACAAGGATTGAAAGGGAACATATAGAAG-ATGAAAGACTAATTGTTAGTGGAGATAT
1 GGAACATGAAAAGG-TTGAAAGGGAACATATA-AAGAATAAAAGACCAATTGTTAGTGGAAATAT
*
10394692 AAA
64 AAT
10394695 GG-ACATG
1 GGAACATG
10394702 TAGGGGATAA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
65 9 0.15
66 51 0.82
67 2 0.03
ACGTcount: A:0.45, C:0.06, G:0.27, T:0.21
Consensus pattern (66 bp):
GGAACATGAAAAGGTTGAAAGGGAACATATAAAGAATAAAAGACCAATTGTTAGTGGAAATATAA
T
Found at i:10400496 original size:21 final size:22
Alignment explanation
Indices: 10400452--10400503 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
10400442 TTATTAAAAT
*
10400452 AAATTATTTATTATAAAATCAA
1 AAATTAATTATTATAAAATCAA
* *
10400474 AAATTAATTATT-TGAATTCAA
1 AAATTAATTATTATAAAATCAA
*
10400495 AACTTAATT
1 AAATTAATT
10400504 CAATTAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 15 0.58
22 11 0.42
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
AAATTAATTATTATAAAATCAA
Found at i:10400512 original size:21 final size:21
Alignment explanation
Indices: 10400470--10400512 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
10400460 TATTATAAAA
*
10400470 TCAAAAATTAATTATTTGAAT
1 TCAAAAATTAATTAATTGAAT
*
10400491 TCAAAACTTAATTCAATT-AAT
1 TCAAAAATTAATT-AATTGAAT
10400512 T
1 T
10400513 TTATAATCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.47, C:0.09, G:0.02, T:0.42
Consensus pattern (21 bp):
TCAAAAATTAATTAATTGAAT
Found at i:10406258 original size:11 final size:11
Alignment explanation
Indices: 10406223--10406273 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
10406213 AAAAAAAAAC
* *
10406223 AAATAATGAAT
1 AAATAATTAAA
*
10406234 AAATAAATATAA
1 AAATAATTA-AA
10406246 AAATAATT-AA
1 AAATAATTAAA
10406256 AAA-AATTAAA
1 AAATAATTAAA
10406266 AAATAATT
1 AAATAATT
10406274 TTATAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 4 0.12
10 10 0.30
11 11 0.33
12 8 0.24
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (11 bp):
AAATAATTAAA
Found at i:10411139 original size:112 final size:110
Alignment explanation
Indices: 10411007--10411258 Score: 387
Period size: 112 Copynumber: 2.2 Consensus size: 110
10410997 AATGGCTAAT
* * *
10411007 TATAATATAGGGGTATTTTCATAATTATAATAGGAGAGGCATTATATGAAACAATTAAAAGGGTA
1 TATAATATA-GGGTATTTTCATAATTATAATAGGAGAGACATTATATGAAACAATCAAAAAGGTA
10411072 TTTTTTGTAATTATGGTTAAAGGGTATCATAGTAATTTAAGTTAAA
65 TTTTTTGTAATTATGGTTAAAGGGTATCATAGTAATTTAAGTTAAA
*
10411118 TATAATATGAGAGGTATTTTCATAATTATGATAGGAGAGACATTATATGAAACAATCAAAAAGGT
1 TATAATAT-AG-GGTATTTTCATAATTATAATAGGAGAGACATTATATGAAACAATCAAAAAGGT
* * *
10411183 ATTTTTTGTAATTTTGGTTAAAGGGTATCATAGTAATTTTAGTTAAT
64 ATTTTTTGTAATTATGGTTAAAGGGTATCATAGTAATTTAAGTTAAA
*
10411230 TATAATACAAGGAGTATTTTCATAATTAT
1 TATAATA-TAGG-GTATTTTCATAATTAT
10411259 TGTAAGAGAG
Statistics
Matches: 129, Mismatches: 8, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
111 10 0.08
112 119 0.92
ACGTcount: A:0.39, C:0.04, G:0.17, T:0.39
Consensus pattern (110 bp):
TATAATATAGGGTATTTTCATAATTATAATAGGAGAGACATTATATGAAACAATCAAAAAGGTAT
TTTTTGTAATTATGGTTAAAGGGTATCATAGTAATTTAAGTTAAA
Found at i:10411296 original size:86 final size:86
Alignment explanation
Indices: 10411185--10411369 Score: 218
Period size: 86 Copynumber: 2.2 Consensus size: 86
10411175 AAAAAGGTAT
* * *
10411185 TTTTTGTAATTTTGGTTAAAGGGTATCATAGTAATTTTAGTTAATTATAATACAAG-GAGTATTT
1 TTTTTGTAATTATAGTTAAAGGGTATCATAGTAATTTTAGTAAATTATAATACAAGAG-GTATTT
10411249 TCATAATTATTG-TA-AGA-GAGCA
65 TCATAATTA-TGATATA-ATG-GCA
* * **
10411271 TTTTTGTAATTATAGTTATAA-GGTATTATAGTAATTTTGGTAAATTATAATATGAGAGGTATTT
1 TTTTTGTAATTATAGTTA-AAGGGTATCATAGTAATTTTAGTAAATTATAATACAAGAGGTATTT
*
10411335 TTATAATTATGATATAATGGCA
65 TCATAATTATGATATAATGGCA
10411357 TTTTTGTAATTAT
1 TTTTTGTAATTAT
10411370 GGTTGTATGT
Statistics
Matches: 86, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
85 2 0.02
86 79 0.92
87 5 0.06
ACGTcount: A:0.35, C:0.03, G:0.16, T:0.46
Consensus pattern (86 bp):
TTTTTGTAATTATAGTTAAAGGGTATCATAGTAATTTTAGTAAATTATAATACAAGAGGTATTTT
CATAATTATGATATAATGGCA
Found at i:10411421 original size:87 final size:86
Alignment explanation
Indices: 10411268--10411432 Score: 197
Period size: 87 Copynumber: 1.9 Consensus size: 86
10411258 TTGTAAGAGA
* * **
10411268 GCATTTTTGTAATTATAGTTATAAGGTATTATAGTAATTTTGGTAAATTATAATATGAGAGGTAT
1 GCATTTTTGTAATTATAGTTATAAGGCATTATAGTAATTTTGGCAAATTATAATAAAAGAGGTA-
10411333 TTTTA-TAATTATGATATAATG
65 TTTTAGTAATTATGATATAATG
* * * * ** **
10411354 GCATTTTTGTAATTATGGTTGTATGTGCATTATAGTAATTTTGGCCAATTATGGTAAAAGTTGTA
1 GCATTTTTGTAATTATAGTTATAAG-GCATTATAGTAATTTTGGCAAATTATAATAAAAGAGGTA
10411419 TTTTAGTAATTATG
65 TTTTAGTAATTATG
10411433 TTAAGAAGGG
Statistics
Matches: 65, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
86 27 0.42
87 38 0.58
ACGTcount: A:0.32, C:0.03, G:0.18, T:0.47
Consensus pattern (86 bp):
GCATTTTTGTAATTATAGTTATAAGGCATTATAGTAATTTTGGCAAATTATAATAAAAGAGGTAT
TTTAGTAATTATGATATAATG
Found at i:10411451 original size:26 final size:26
Alignment explanation
Indices: 10411422--10411481 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
10411412 AGTTGTATTT
**
10411422 TAGTAATTATGTTAAGAAGG-GCATTA
1 TAGTAATTATGTTAAG-AGGAAAATTA
*
10411448 TAGTTATTATGTTAAGAGGAAAATTA
1 TAGTAATTATGTTAAGAGGAAAATTA
10411474 TAGTAATT
1 TAGTAATT
10411482 TTAGTTTATC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 3 0.10
26 26 0.90
ACGTcount: A:0.40, C:0.02, G:0.20, T:0.38
Consensus pattern (26 bp):
TAGTAATTATGTTAAGAGGAAAATTA
Found at i:10411855 original size:25 final size:26
Alignment explanation
Indices: 10411802--10411859 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
10411792 ATTTTTAACC
*
10411802 AATTATGATATGAAAGGTATTTGCGT
1 AATTATGATATGAAAGGTATTTGCAT
* *
10411828 AATTATGATA-GGAAGGTATTTTCAT
1 AATTATGATATGAAAGGTATTTGCAT
10411853 AATTATG
1 AATTATG
10411860 GTTAAAGGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 19 0.66
26 10 0.34
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.40
Consensus pattern (26 bp):
AATTATGATATGAAAGGTATTTGCAT
Found at i:10412190 original size:470 final size:471
Alignment explanation
Indices: 10411522--10412447 Score: 1184
Period size: 470 Copynumber: 2.0 Consensus size: 471
10411512 ATCAATTTGA
* *
10411522 ATAGATGTAATTCAATTGTCAAGTGATTACAAAAGGGAATTATAATCATTTATAAGGCAATTAGT
1 ATAGATGTAATTCAATTGTCAAGTAATTACAAAAGGGAATTATAATCATTTATAAGGCAATTAAT
* * * *
10411587 TTCATATTATTATATGAATGTTAAAATTTAATGCACAATTATGAAGCAATCATAAGGGTATTATT
66 TTCATATTATTATATGAATGTTAAAATTTAAT----AATGATAAAGCAATCAAAAGGATATTATT
* * * *
10411652 GTAATTATGCTTAGAAGATATTATAGTAATTTTGGCTAATCATAATATGAGGGTTATCTTCGTAA
127 GTAATTATGCTAAGAAGATATTATAGTAATTTTGGCCAACCATAATATGAGGGTTATCTTCATAA
* * ** * *
10411717 TTATAATTGGAGAGGCATTATATGAAGCAATCAAAAGGGTTTTTTTGAGTAATTATAGTTAGAGG
192 TTATAATTGGAGAAGCATTACATGAAGCAATCAAAAAAGCTTTCTTGAGTAATTATAGTTAGAGG
* * * *
10411782 GTATTATAATATTTTTAACCAATTATGATATGAAAGGTATTTGCGTAATTATGATAGGAAGGTAT
257 GTATTATAATAATTTTAACCAATTATAATA-G-AA-GTATTTGCATAATTATGATAAGAAGGTAT
* *
10411847 TTTCATAATTATGGTTAAA-GGATATTATAATAA-TTTTTGACAAATTATAATATGAGAGGTACT
319 TTTCATAATTATGGTTAAATGG-TATCATAATAATTTTTTGACAAATTATAATATGAGAGATA-T
* * * ** * * * *
10411910 TTT-GTAATTATGGTATGAGGAGTATTATAATAATTTTAGCAAATGATTGTATGTGGGATTTACA
382 TTTAGTAATTATGATAGGAGAAACATTATAATAATTTTAGCAAATGATTATAGGAGGCATTTACA
10411974 TAATTACAAGCATGATAGGGGCATT
447 TAATTACAAGCATGATAGGGGCATT
* * * * **
10411999 ATAGTATGTAATTCAATTGTTAAGTAATTA-AAAA-TGTATTATAATCATTTCTAAGGGGATTAA
1 ATAG-ATGTAATTCAATTGTCAAGTAATTACAAAAGGGAATTATAATCATTTATAAGGCAATTAA
*
10412062 TTTCATATTATTATATGGATGTTAAAATTTAAT-ATGATAAAGCAATCAAAAGGATATT-TTGTA
65 TTTCATATTATTATATGAATGTTAAAATTTAATAATGATAAAGCAATCAAAAGGATATTATTGTA
* * * * * *
10412125 ATTATGCTAAGAGGGTATTGTAGTAATTTTGGCCAACCATAATGTGAGGAG-TATTTTTATAATT
130 ATTATGCTAAGAAGATATTATAGTAATTTTGGCCAACCATAATATGAGG-GTTATCTTCATAATT
** * *
10412189 ATGTTTGGAGAAGCATTACATGAAGCAATCAAAAAAGCTTTCTTGGGTAATTATGGTTAGAGGGT
194 ATAATTGGAGAAGCATTACATGAAGCAATCAAAAAAGCTTTCTTGAGTAATTATAGTTAGAGGGT
* * * * * **
10412254 ATTATAGTAATTTTAACTAATTATAATAGGAGTATTTTCATAATTATGATAAGAGGGTATTTTTG
259 ATTATAATAATTTTAACCAATTATAATAGAAGTATTTGCATAATTATGATAAGAAGGTATTTTCA
*
10412319 TAATTATGGTTAAATGGTATCATAGTAATTTTTTGACAAATTATAATATGAGAGATATTTTAGTA
324 TAATTATGGTTAAATGGTATCATAATAATTTTTTGACAAATTATAATATGAGAGATATTTTAGTA
*
10412384 ATTATGATAGGAGAAACATTATAATAATTTTAGTAAATGATTATAGGAGGCATTTACATAATTA
389 ATTATGATAGGAGAAACATTATAATAATTTTAGCAAATGATTATAGGAGGCATTTACATAATTA
10412448 TGATTATAGG
Statistics
Matches: 387, Mismatches: 57, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
467 55 0.14
468 87 0.22
469 1 0.00
470 136 0.35
471 22 0.06
476 55 0.14
477 8 0.02
478 23 0.06
ACGTcount: A:0.38, C:0.06, G:0.18, T:0.39
Consensus pattern (471 bp):
ATAGATGTAATTCAATTGTCAAGTAATTACAAAAGGGAATTATAATCATTTATAAGGCAATTAAT
TTCATATTATTATATGAATGTTAAAATTTAATAATGATAAAGCAATCAAAAGGATATTATTGTAA
TTATGCTAAGAAGATATTATAGTAATTTTGGCCAACCATAATATGAGGGTTATCTTCATAATTAT
AATTGGAGAAGCATTACATGAAGCAATCAAAAAAGCTTTCTTGAGTAATTATAGTTAGAGGGTAT
TATAATAATTTTAACCAATTATAATAGAAGTATTTGCATAATTATGATAAGAAGGTATTTTCATA
ATTATGGTTAAATGGTATCATAATAATTTTTTGACAAATTATAATATGAGAGATATTTTAGTAAT
TATGATAGGAGAAACATTATAATAATTTTAGCAAATGATTATAGGAGGCATTTACATAATTACAA
GCATGATAGGGGCATT
Found at i:10412316 original size:25 final size:26
Alignment explanation
Indices: 10412276--10412326 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
10412266 TTAACTAATT
*
10412276 ATAATAGGAGTATTTTCATAATTATG
1 ATAAGAGGAGTATTTTCATAATTATG
**
10412302 ATAAGAGG-GTATTTTTGTAATTATG
1 ATAAGAGGAGTATTTTCATAATTATG
10412327 GTTAAATGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.35, C:0.02, G:0.20, T:0.43
Consensus pattern (26 bp):
ATAAGAGGAGTATTTTCATAATTATG
Found at i:10412327 original size:83 final size:87
Alignment explanation
Indices: 10412235--10412392 Score: 218
Period size: 83 Copynumber: 1.9 Consensus size: 87
10412225 GCTTTCTTGG
* * *
10412235 GTAATTATGGTTAGAGGGTATTATAGTAA-TTTTAACTAATTATAATA-G-GAG-TATTTTCA-T
1 GTAATTATGGTTAAAGGGTATCATAGTAATTTTTAACAAATTATAATATGAGAGATATTTT-AGT
10412295 AATTATGATAAGAGGGTATTTTT
65 AATTATGATAAGAGGGTATTTTT
* *
10412318 GTAATTATGGTTAAATGGTATCATAGTAATTTTTTGACAAATTATAATATGAGAGATATTTTAGT
1 GTAATTATGGTTAAAGGGTATCATAGTAA-TTTTTAACAAATTATAATATGAGAGATATTTTAGT
10412383 AATTATGATA
65 AATTATGATA
10412393 GGAGAAACAT
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
83 26 0.41
85 16 0.25
86 1 0.02
87 4 0.06
88 17 0.27
ACGTcount: A:0.37, C:0.03, G:0.18, T:0.43
Consensus pattern (87 bp):
GTAATTATGGTTAAAGGGTATCATAGTAATTTTTAACAAATTATAATATGAGAGATATTTTAGTA
ATTATGATAAGAGGGTATTTTT
Found at i:10413350 original size:17 final size:18
Alignment explanation
Indices: 10413325--10413360 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
10413315 AATATAATTT
10413325 TTATAA-TTTTAAAAAAA
1 TTATAATTTTTAAAAAAA
*
10413342 TTATTATTTTTAAAAAAA
1 TTATAATTTTTAAAAAAA
10413360 T
1 T
10413361 GAAAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TTATAATTTTTAAAAAAA
Found at i:10419822 original size:31 final size:31
Alignment explanation
Indices: 10419764--10419825 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
10419754 ATATACTATT
*
10419764 AATAAATTAAATGATATCATCTCATTAATAA
1 AATAAATTAAATAATATCATCTCATTAATAA
* * * *
10419795 AATAAATTAGATAATATTATTTTATTAATAA
1 AATAAATTAAATAATATCATCTCATTAATAA
10419826 GTAAAATTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.40
Consensus pattern (31 bp):
AATAAATTAAATAATATCATCTCATTAATAA
Found at i:10420100 original size:71 final size:71
Alignment explanation
Indices: 10419981--10420126 Score: 222
Period size: 71 Copynumber: 2.1 Consensus size: 71
10419971 GCATTTGGTA
*
10419981 AAAAACCCAGCCATCCACTCATTGCCAGTCGATAAAAGTAGGAATGGGCCTAATTTGTCCTACTT
1 AAAAACCCAGCCATCCACTCATTGCCAATCGATAAAAGTAGGAATGGGCCTAATTTGTCCTACTT
10420046 AAGCCG
66 AAGCCG
* * * *
10420052 AAAAACTCATCCATCC-CTTCATTGCCAATCGATAAAAGTAGGATTGGGCCTAATTTGTCGTACT
1 AAAAACCCAGCCATCCAC-TCATTGCCAATCGATAAAAGTAGGAATGGGCCTAATTTGTCCTACT
*
10420116 TAAGGCG
65 TAAGCCG
10420123 AAAA
1 AAAA
10420127 CAATTTTTTA
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 1 0.01
71 67 0.99
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (71 bp):
AAAAACCCAGCCATCCACTCATTGCCAATCGATAAAAGTAGGAATGGGCCTAATTTGTCCTACTT
AAGCCG
Found at i:10421208 original size:18 final size:18
Alignment explanation
Indices: 10421180--10421220 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
10421170 TTTTTAGGGA
10421180 TTTTTATTTGAAAAAGATT
1 TTTTTATTTG-AAAAGATT
*
10421199 TTTTTA-TTGAAAGGATT
1 TTTTTATTTGAAAAGATT
10421216 TTTTT
1 TTTTT
10421221 TGTTTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.57
18 3 0.14
19 6 0.29
ACGTcount: A:0.29, C:0.00, G:0.12, T:0.59
Consensus pattern (18 bp):
TTTTTATTTGAAAAGATT
Found at i:10421730 original size:31 final size:31
Alignment explanation
Indices: 10421653--10421735 Score: 85
Period size: 31 Copynumber: 2.7 Consensus size: 31
10421643 CGGTTTCTAG
* * ** * *
10421653 AAAATCCATCAAAAAATTCATATTCCACGGG
1 AAAATTCATCAAAAATTTCATACCCCACCGA
* **
10421684 AAAACTCATTGAAAATTTCATACCCCACCGA
1 AAAATTCATCAAAAATTTCATACCCCACCGA
10421715 AAAATTCATCAAAAATTTCAT
1 AAAATTCATCAAAAATTTCAT
10421736 CCAAACCCAT
Statistics
Matches: 40, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.46, C:0.23, G:0.06, T:0.25
Consensus pattern (31 bp):
AAAATTCATCAAAAATTTCATACCCCACCGA
Found at i:10422243 original size:3 final size:3
Alignment explanation
Indices: 10422237--10422266 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
10422227 GATGATGATG
10422237 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10422267 CTATAATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10422283 original size:13 final size:14
Alignment explanation
Indices: 10422240--10422315 Score: 59
Period size: 13 Copynumber: 5.5 Consensus size: 14
10422230 GATGATGATA
*
10422240 ATAATAATAATAAT
1 ATAATAATAATACT
10422254 AATAATAATAATACT
1 -ATAATAATAATACT
*
10422269 ATAAT-ATATTACT
1 ATAATAATAATACT
** *
10422282 ATGTTAAT-ATAAT
1 ATAATAATAATACT
*
10422295 ATAAT-ATAATAGT
1 ATAATAATAATACT
10422308 ACTAATAA
1 A-TAATAA
10422316 AATTAACCCT
Statistics
Matches: 48, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
12 2 0.04
13 21 0.44
14 11 0.23
15 14 0.29
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.38
Consensus pattern (14 bp):
ATAATAATAATACT
Found at i:10422735 original size:120 final size:120
Alignment explanation
Indices: 10422463--10422735 Score: 282
Period size: 120 Copynumber: 2.3 Consensus size: 120
10422453 TGAAACCATG
* * * * * *
10422463 AGTCGTAAGAAATAATCTGGACTAAGCCAAGATCAAGTGATCAGGATGAAACCATAAGTCAAAAA
1 AGTCATAAGAAATGATCTGAATTAAGCCAAGATCAAGTGATCAGGATGAAACCACAAGTAAAAAA
* * *
10422528 TGAAGCGACTAGGACCAAGTCAAGGTCAAAAATAAATAATCGAGATGAAATCGCA
66 TGAAGCGACCAGGACCAAGTCAAGGTCAAAAATAAATAACCGAGACGAAATCGCA
* * * * * * * *
10422583 AGTCATAAGAAATGCTCTGGATTGATCTAAGATCGAGTGATC-GAGATGAAATCACGAGTAAAAA
1 AGTCATAAGAAATGATCTGAATTAAGCCAAGATCAAGTGATCAG-GATGAAACCACAAGTAAAAA
* * * * ** *
10422647 ATGAAGTGACCGGGATCGAGTCAAGGTTGAAAATAAATAACC-AGGACGAAATCGCG
65 ATGAAGCGACCAGGACCAAGTCAAGGTCAAAAATAAATAACCGA-GACGAAATCGCA
10422703 AGTCAT-AGAAAATGATCTGAATTAAGCCAAGAT
1 AGTCATAAG-AAATGATCTGAATTAAGCCAAGAT
10422736 TGAAATGAGT
Statistics
Matches: 123, Mismatches: 27, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
119 4 0.03
120 119 0.97
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.19
Consensus pattern (120 bp):
AGTCATAAGAAATGATCTGAATTAAGCCAAGATCAAGTGATCAGGATGAAACCACAAGTAAAAAA
TGAAGCGACCAGGACCAAGTCAAGGTCAAAAATAAATAACCGAGACGAAATCGCA
Found at i:10422992 original size:86 final size:85
Alignment explanation
Indices: 10422897--10423070 Score: 215
Period size: 86 Copynumber: 2.0 Consensus size: 85
10422887 ATACAAAGGT
** * ** * * *
10422897 TTTTAGATTCACAGGAAAGAAAGATTCGTAAGATTTCAAG-TTTTGTAAAGGTTCTATAATCTTA
1 TTTTAGATTCACAAAAAAGAAAGATTCATAAGATCCCAAGTTTTTGCAAAGG-T-TAGAATCGTA
10422961 AAAATTTCAAGTTTGCAAAGAC
64 AAAATTTCAAGTTTGCAAAGAC
* *
10422983 TTTTAGATTCACAAAAAAGAAAGATTCATAAGATCCCAAGTTTTTGCAAATGTTAGATTCGTAAA
1 TTTTAGATTCACAAAAAAGAAAGATTCATAAGATCCCAAGTTTTTGCAAAGGTTAGAATCGTAAA
* *
10423048 GATTTCAGGTTTGCAAAGAC
66 AATTTCAAGTTTGCAAAGAC
10423068 TTT
1 TTT
10423071 CAAATTCGTA
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
85 30 0.40
86 36 0.48
87 9 0.12
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.34
Consensus pattern (85 bp):
TTTTAGATTCACAAAAAAGAAAGATTCATAAGATCCCAAGTTTTTGCAAAGGTTAGAATCGTAAA
AATTTCAAGTTTGCAAAGAC
Found at i:10423266 original size:22 final size:18
Alignment explanation
Indices: 10423217--10423262 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
10423207 AGATGCAAGG
*
10423217 TTCATAAGGACTTTCAGA
1 TTCATAAGAACTTTCAGA
10423235 TTCATAAGAACTTTCAGA
1 TTCATAAGAACTTTCAGA
10423253 TTCATAAGAA
1 TTCATAAGAA
10423263 AGAAAGATTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (18 bp):
TTCATAAGAACTTTCAGA
Found at i:10428882 original size:18 final size:19
Alignment explanation
Indices: 10428861--10428903 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
10428851 AAAATGAGCT
10428861 AAAAAA-TAAAATAAAATC
1 AAAAAATTAAAATAAAATC
*
10428879 AAAAAATTAAAATAAAATT
1 AAAAAATTAAAATAAAATC
10428898 AAAAAA
1 AAAAAA
10428904 GGAAATCTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (19 bp):
AAAAAATTAAAATAAAATC
Found at i:10429158 original size:21 final size:20
Alignment explanation
Indices: 10429118--10429159 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
10429108 ACTGAAAACT
10429118 GAAAATCCTTGTCAATTTTTG
1 GAAAATCCTTG-CAATTTTTG
10429139 GAAAATCCATTG-AATATTTTG
1 GAAAATCC-TTGCAAT-TTTTG
10429160 CTGAAAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 3 0.16
21 13 0.68
22 3 0.16
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (20 bp):
GAAAATCCTTGCAATTTTTG
Found at i:10429718 original size:27 final size:27
Alignment explanation
Indices: 10429667--10429721 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
10429657 AAAAAGAAAG
* * * *
10429667 AAAATAAAAATAATGATAATGATAATA
1 AAAATAAAAACAATAACAATAATAATA
10429694 AAAATAAAAACAATAACAATAATAATA
1 AAAATAAAAACAATAACAATAATAATA
10429721 A
1 A
10429722 TAATGATGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.71, C:0.04, G:0.04, T:0.22
Consensus pattern (27 bp):
AAAATAAAAACAATAACAATAATAATA
Found at i:10429719 original size:3 final size:3
Alignment explanation
Indices: 10429669--10429725 Score: 51
Period size: 3 Copynumber: 19.0 Consensus size: 3
10429659 AAAGAAAGAA
* * * * * * *
10429669 AAT AAA AAT AAT GAT AAT GAT AAT AAA AAT AAA AAC AAT AAC AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10429717 AAT AAT AAT
1 AAT AAT AAT
10429726 GATGATGATG
Statistics
Matches: 41, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.25
Consensus pattern (3 bp):
AAT
Found at i:10429792 original size:5 final size:5
Alignment explanation
Indices: 10429779--10429823 Score: 63
Period size: 5 Copynumber: 9.0 Consensus size: 5
10429769 ATTACTATGT
* * *
10429779 TAATA TACTA TACTC TAATA TAATA TAATA TAATA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
10429824 GTACTAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:10433993 original size:54 final size:54
Alignment explanation
Indices: 10433907--10434021 Score: 223
Period size: 54 Copynumber: 2.1 Consensus size: 54
10433897 TACCATGTCT
10433907 AGTT-TTAGGCGTCCAATAAAATGGGTGTGTTAAAAAAAAGGAACAGACTACAA
1 AGTTATTAGGCGTCCAATAAAATGGGTGTGTTAAAAAAAAGGAACAGACTACAA
10433960 AGTTATTAGGCGTCCAATAAAATGGGTGTGTTAAAAAAAAGGAACAGACTACAA
1 AGTTATTAGGCGTCCAATAAAATGGGTGTGTTAAAAAAAAGGAACAGACTACAA
10434014 AGTTATTA
1 AGTTATTA
10434022 TGCCTAAGAA
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
53 4 0.07
54 57 0.93
ACGTcount: A:0.43, C:0.10, G:0.22, T:0.24
Consensus pattern (54 bp):
AGTTATTAGGCGTCCAATAAAATGGGTGTGTTAAAAAAAAGGAACAGACTACAA
Found at i:10434206 original size:2 final size:2
Alignment explanation
Indices: 10434201--10434234 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
10434191 TCCTTAGAAA
10434201 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
10434235 TTGTTTGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:10435016 original size:22 final size:22
Alignment explanation
Indices: 10434959--10435019 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
10434949 ATTTGTCCAG
* *
10434959 AAAAAAAAAAAAACA-AAATAC
1 AAAATAAAAAAAATATAAATAC
*
10434980 AAAATATAAAAAAATATAAATAT
1 AAAATA-AAAAAAATATAAATAC
*
10435003 GAAATAAAAAAAATATA
1 AAAATAAAAAAAATATA
10435020 CCAAAAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 5 0.15
22 19 0.56
23 10 0.29
ACGTcount: A:0.79, C:0.03, G:0.02, T:0.16
Consensus pattern (22 bp):
AAAATAAAAAAAATATAAATAC
Found at i:10435047 original size:11 final size:11
Alignment explanation
Indices: 10434980--10435075 Score: 54
Period size: 11 Copynumber: 8.5 Consensus size: 11
10434970 AACAAAATAC
10434980 AAAATAT-AAA
1 AAAATATAAAA
10434990 AAAATATAAATA
1 AAAATATAAA-A
**
10435002 TGAA-ATAAAA
1 AAAATATAAAA
**
10435012 AAAATATACCA
1 AAAATATAAAA
* *
10435023 AAAATA-ATAC
1 AAAATATAAAA
10435033 AAAATATAAAAA
1 AAAATAT-AAAA
*
10435045 AAAATGCAAAACAA
1 AAAAT--ATAA-AA
*
10435059 AAAATACAAAA
1 AAAATATAAAA
10435070 AAAATA
1 AAAATA
10435076 GAACAGAAAA
Statistics
Matches: 65, Mismatches: 13, Indels: 15
0.70 0.14 0.16
Matches are distributed among these distances:
10 17 0.26
11 25 0.38
12 13 0.20
13 2 0.03
14 8 0.12
ACGTcount: A:0.75, C:0.06, G:0.02, T:0.17
Consensus pattern (11 bp):
AAAATATAAAA
Found at i:10435062 original size:14 final size:13
Alignment explanation
Indices: 10435040--10435073 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
10435030 TACAAAATAT
*
10435040 AAAAAAAAATGCA
1 AAAAAAAAATACA
10435053 AAACAAAAAATACA
1 AAA-AAAAAATACA
10435067 AAAAAAA
1 AAAAAAA
10435074 TAGAACAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.82, C:0.09, G:0.03, T:0.06
Consensus pattern (13 bp):
AAAAAAAAATACA
Found at i:10435388 original size:15 final size:16
Alignment explanation
Indices: 10435368--10435397 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10435358 AGATTCTGCC
10435368 AAAAA-CAAAAAAAAA
1 AAAAACCAAAAAAAAA
10435383 AAAAACCAAAAAAAA
1 AAAAACCAAAAAAAA
10435398 TCAAACAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (16 bp):
AAAAACCAAAAAAAAA
Found at i:10435502 original size:22 final size:22
Alignment explanation
Indices: 10435477--10435520 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
10435467 TCAGTTTCTT
10435477 AAAA-AAAAAAAAAGAAATAGTC
1 AAAATAAAAAAAAA-AAATAGTC
* *
10435499 AAAATACAAATAAAAAATAGTC
1 AAAATAAAAAAAAAAAATAGTC
10435521 TCACCAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.73, C:0.07, G:0.07, T:0.14
Consensus pattern (22 bp):
AAAATAAAAAAAAAAAATAGTC
Found at i:10435935 original size:20 final size:20
Alignment explanation
Indices: 10435898--10435935 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
10435888 TCAACCCGCG
*
10435898 ACCCGACCCGAGATCCGTGT
1 ACCCGACCCGAGACCCGTGT
*
10435918 ACCCGACCCGCGACCCGT
1 ACCCGACCCGAGACCCGT
10435936 TTCCTTCATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.47, G:0.24, T:0.11
Consensus pattern (20 bp):
ACCCGACCCGAGACCCGTGT
Found at i:10436672 original size:221 final size:219
Alignment explanation
Indices: 10436261--10436672 Score: 500
Period size: 221 Copynumber: 1.9 Consensus size: 219
10436251 AATAAACTTA
10436261 AAAATAAAATAATATAAAAATAAATTTAATAATAATACTAAAGTAATAAAAAATGAGAGAAAAGG
1 AAAATAAAATAATATAAAAATAAATTTAATAATAATACTAAAGTAATAAAAAATGAGAGAAAAGG
* * * *
10436326 AAATTTTTATCTGACAATGAGATTCAAAGGTATTCCGACTAATGATGCCTAAGAAATCTCTAGGT
66 AAATTTTTATCCGACAATGAGATTCAAAAGTATTCCGACTAATGATACCTAAAAAATCTCTAGGT
*
10436391 GAAAATTTTTTTAAAAAAATATTACCAGTATATTGAAATATTTATAAAAAAATTTTCAATAAAAA
131 GAAAATTTTTTTAAAAAAATATTACCAGTATATTGAAATATTTATAAAAAAATCTTCAATAAAAA
10436456 TAAAAATTTTCCTTTTTTGGTTAT
196 TAAAAATTTTCCTTTTTTGGTTAT
**
10436480 AAAATAATAATAA-ATAAAAATTGA-TTAATATATTAAATA-TATAAGTAAT-AAAAATGAGAAG
1 AAAATAA-AATAATATAAAAATAAATTTAATA-A-T-AATACTA-AAGTAATAAAAAATGAG-AG
** * * *
10436541 AAAA-GAAA-TTTTATCCGATGATGTGATTCTAAAAGTATTCCGAGTAGA-GATACTTTAAAAAA
60 AAAAGGAAATTTTTATCCGACAATGAGATTC-AAAAGTATTCCGACTA-ATGATAC-CTAAAAAA
* ** * * *
10436603 TTTCTAGGTGAGAAAATTTTTTT-GTAAAATATTATCAGTGTATTGAAATATTTAT-AGAAAATC
122 TCTCTAGGT--GAAAATTTTTTTAAAAAAATATTACCAGTATATTGAAATATTTATAAAAAAATC
10436666 TTCAATA
185 TTCAATA
10436673 TAATGAAAAT
Statistics
Matches: 164, Mismatches: 18, Indels: 20
0.81 0.09 0.10
Matches are distributed among these distances:
218 6 0.04
219 34 0.21
220 39 0.24
221 45 0.27
222 28 0.17
223 12 0.07
ACGTcount: A:0.48, C:0.06, G:0.11, T:0.34
Consensus pattern (219 bp):
AAAATAAAATAATATAAAAATAAATTTAATAATAATACTAAAGTAATAAAAAATGAGAGAAAAGG
AAATTTTTATCCGACAATGAGATTCAAAAGTATTCCGACTAATGATACCTAAAAAATCTCTAGGT
GAAAATTTTTTTAAAAAAATATTACCAGTATATTGAAATATTTATAAAAAAATCTTCAATAAAAA
TAAAAATTTTCCTTTTTTGGTTAT
Found at i:10438101 original size:8 final size:8
Alignment explanation
Indices: 10438088--10438112 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
10438078 TGCTTTGGGT
10438088 TTTTTTTA
1 TTTTTTTA
10438096 TTTTTTTA
1 TTTTTTTA
10438104 TTTTTTTA
1 TTTTTTTA
10438112 T
1 T
10438113 AATAAGCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTTTA
Found at i:10438363 original size:12 final size:12
Alignment explanation
Indices: 10438346--10438384 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
10438336 TATTTTAATT
10438346 TAATATTAATAA
1 TAATATTAATAA
*
10438358 TTATATTAATAA
1 TAATATTAATAA
*
10438370 TAATAATAATAA
1 TAATATTAATAA
10438382 TAA
1 TAA
10438385 ATATATTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
TAATATTAATAA
Found at i:10438370 original size:3 final size:3
Alignment explanation
Indices: 10438346--10438384 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
10438336 TATTTTAATT
* * *
10438346 TAA TAT TAA TAA TTA TAT TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10438385 ATATATTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (3 bp):
TAA
Found at i:10439455 original size:9 final size:9
Alignment explanation
Indices: 10439409--10439433 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10439399 TAAAAAAATT
10439409 TTTTTTTTA
1 TTTTTTTTA
10439418 TTTTTTTTA
1 TTTTTTTTA
10439427 TTTTTTT
1 TTTTTTT
10439434 ATACTATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:10441297 original size:15 final size:15
Alignment explanation
Indices: 10441277--10441307 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10441267 AGGCGATGAT
10441277 GTGAGGAGTAGTTTA
1 GTGAGGAGTAGTTTA
10441292 GTGAGGAGTAGTTTA
1 GTGAGGAGTAGTTTA
10441307 G
1 G
10441308 GAACCTTTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.42, T:0.32
Consensus pattern (15 bp):
GTGAGGAGTAGTTTA
Found at i:10444563 original size:13 final size:12
Alignment explanation
Indices: 10444533--10444577 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
10444523 TCAAGATTTC
10444533 AAAAACAAAA-A
1 AAAAACAAAACA
10444544 ACAAAACAAAACA
1 A-AAAACAAAACA
10444557 AAGAAACAAAA-A
1 AA-AAACAAAACA
10444569 AAAAA-AAAA
1 AAAAACAAAA
10444578 AGAGAAAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
10 4 0.13
11 4 0.13
12 13 0.42
13 10 0.32
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (12 bp):
AAAAACAAAACA
Found at i:10444572 original size:18 final size:17
Alignment explanation
Indices: 10444533--10444578 Score: 67
Period size: 18 Copynumber: 2.7 Consensus size: 17
10444523 TCAAGATTTC
10444533 AAAAACAAAAAACAAAA
1 AAAAACAAAAAACAAAA
*
10444550 CAAAACAAAGAAACAAAA
1 AAAAACAAA-AAACAAAA
10444568 AAAAA-AAAAAA
1 AAAAACAAAAAA
10444579 GAGAAAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 3 0.12
17 11 0.42
18 12 0.46
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (17 bp):
AAAAACAAAAAACAAAA
Found at i:10445182 original size:14 final size:12
Alignment explanation
Indices: 10445147--10445191 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
10445137 GATGGGGCAT
*
10445147 AAAAAAATAAAT
1 AAAAAAATAAAA
*
10445159 AAATAAATAAACA
1 AAAAAAATAAA-A
10445172 AACAAAAATAAAA
1 AA-AAAAATAAAA
10445185 AAAAAAA
1 AAAAAAA
10445192 AGAAAAGAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
12 15 0.54
13 5 0.18
14 8 0.29
ACGTcount: A:0.84, C:0.04, G:0.00, T:0.11
Consensus pattern (12 bp):
AAAAAAATAAAA
Found at i:10447181 original size:22 final size:22
Alignment explanation
Indices: 10447153--10447217 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
10447143 TTGAGATTTG
*
10447153 TAAGACCCCCGGACATAATCTT
1 TAAGACCTCCGGACATAATCTT
**
10447175 TAAGACCTCCGGGTATAA-CTTT
1 TAAGACCTCCGGACATAATC-TT
*
10447197 TAAGACCTCCGAACATAATCT
1 TAAGACCTCCGGACATAATCT
10447218 CTAAAGCCTC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (22 bp):
TAAGACCTCCGGACATAATCTT
Found at i:10447203 original size:44 final size:44
Alignment explanation
Indices: 10447153--10447246 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 44
10447143 TTGAGATTTG
* * *
10447153 TAAGACCCCCGGACATAATCT-TTAAGACCTCCGGGTATAACTTT
1 TAAGACCCCCGAACATAATCTCTAAAG-CCTCCGGGCATAACTTT
* * *
10447197 TAAGACCTCCGAACATAATCTCTAAAGCCTCTGTGCATAACTTT
1 TAAGACCCCCGAACATAATCTCTAAAGCCTCCGGGCATAACTTT
10447241 TAAGAC
1 TAAGAC
10447247 GTTTAAGTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 39 0.91
45 4 0.09
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.28
Consensus pattern (44 bp):
TAAGACCCCCGAACATAATCTCTAAAGCCTCCGGGCATAACTTT
Found at i:10447426 original size:22 final size:23
Alignment explanation
Indices: 10447370--10447434 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 23
10447360 CACAACTTTC
10447370 AAGACCTCC-AGGCATGATTTTGT
1 AAGACCTCCGA-GCATGATTTTGT
* *
10447393 AAGACTTTCGAGCATGATTTT-T
1 AAGACCTCCGAGCATGATTTTGT
*
10447415 AAGACCTCCGAGCATAATTT
1 AAGACCTCCGAGCATGATTT
10447435 CAATTCATGG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
22 18 0.50
23 17 0.47
24 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.32
Consensus pattern (23 bp):
AAGACCTCCGAGCATGATTTTGT
Found at i:10447556 original size:110 final size:110
Alignment explanation
Indices: 10447385--10447622 Score: 300
Period size: 110 Copynumber: 2.2 Consensus size: 110
10447375 CTCCAGGCAT
* * * * * *
10447385 GATTTTGTAAGACTTTCGAGCATGATTTTTAAGACCTCCGAGCATAATTTCAATTCATGGTGTTA
1 GATTCTGTAAGACCTCCGAACATGATTTCTAAGACCTCCGAGCATAAATTCAATTCATGGTGTTA
10447450 TCCCAATCGATTCTATATCTTTCAACTTGTGGTGTTATCCCAGTC
66 TCCCAATCGATTCTATATCTTTCAACTTGTGGTGTTATCCCAGTC
* *
10447495 GATTCTGTAAGACCTCCGAACATTATTTCTAAGACCTCC-AGACATAAATTCAACTT-GTGGTGT
1 GATTCTGTAAGACCTCCGAACATGATTTCTAAGACCTCCGAG-CATAAATTCAA-TTCATGGTGT
* * ** **
10447558 TATCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCTTAGTC
64 TATCCCAATCGATTCTATATCTTTCAACTTGTGGTGTTATCCCAGTC
* *
10447605 AATTCTATAAGACCTCCG
1 GATTCTGTAAGACCTCCG
10447623 GGCATAAATT
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
109 2 0.02
110 106 0.96
111 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (110 bp):
GATTCTGTAAGACCTCCGAACATGATTTCTAAGACCTCCGAGCATAAATTCAATTCATGGTGTTA
TCCCAATCGATTCTATATCTTTCAACTTGTGGTGTTATCCCAGTC
Found at i:10447759 original size:198 final size:196
Alignment explanation
Indices: 10447409--10448019 Score: 735
Period size: 198 Copynumber: 3.1 Consensus size: 196
10447399 TTCGAGCATG
* * ** * *
10447409 ATTTT-TAAGACCTCCGAGCATAATTTCAATTCATGGTGTTATCCCAATCGATTCTATATCTTTC
1 ATTTTGTAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTC
* * * *
10447473 AACTTGTGGTGTTATCCCAGTCGATTCTGTAAGACCTCCGAA-CATTATTTCTAAGACCTCCAGA
66 AACTTGTGATGTTATCCCA-TCGATTCTGTAAGACCTCC-AAGCATGATTTTTAAGACCTCTAGA
** * * * * *
10447537 CATAAATTCAACTTGTGGTGTTATCCCGATCGATTCTTTATCTTTTGACTTGTGGTGTTATCTTA
129 CAT-AATTTTATTTGCGATGTTATCCCGATCGATTCTTTATCTTTTGACTCGTGATGTTATCTTA
10447602 GTCA
193 GTCA
* * *
10447606 ATTCTATAAGACCTCCGGGCATAAATTT-GATTCGCGATGTTATCCCGATCGATTCTTTATCTTT
1 ATTTTGTAAGACCTCCGGGCAT-AATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTT
* * * *
10447670 CGACTTGTGATGTTATCCCGATCGATTCTGTAAGACCTCCAAGTATGATTTTTAAGACCTCTGGG
65 CAACTTGTGATGTTATCCC-ATCGATTCTGTAAGACCTCCAAGCATGATTTTTAAGACCTCTAGA
* ** *
10447735 CATAATTTTGATTTACGATGTTATCTTGATCGATTCTTTATCTTTCGACTCGTGATGTTATCTTA
129 CATAATTTT-ATTTGCGATGTTATCCCGATCGATTCTTTATCTTTTGACTCGTGATGTTATCTTA
*
10447800 GTCG
193 GTCA
* * *
10447804 ATTTTGTAAGACCTTCGGGTATAATTTCGATTCGCGGTGTTATCCTGATCGATT-TCTTATCTTT
1 ATTTTGTAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCT-TTATCTTT
* ** * *
10447868 CAACTTGCGATGTTATCCCAATCGATTCTGTAAGACCTCCGGGCATGATTTTTAAGACGTTTAGA
65 CAACTTGTGATGTTATCCC-ATCGATTCTGTAAGACCTCCAAGCATGATTTTTAAGACCTCTAGA
* * * **
10447933 CATAATTTTATTGCGCGATGTTATTCCGATCGATTCTTTATCTTTTGACTCGCGATGTTATCCCA
129 CATAATTTTATT-TGCGATGTTATCCCGATCGATTCTTTATCTTTTGACTCGTGATGTTATCTTA
10447998 GTCA
193 GTCA
10448002 ATTTTGTAAGACCTCCGG
1 ATTTTGTAAGACCTCCGG
10448020 ACATGATTCT
Statistics
Matches: 351, Mismatches: 55, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
197 19 0.05
198 326 0.93
199 6 0.02
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (196 bp):
ATTTTGTAAGACCTCCGGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCTTTATCTTTC
AACTTGTGATGTTATCCCATCGATTCTGTAAGACCTCCAAGCATGATTTTTAAGACCTCTAGACA
TAATTTTATTTGCGATGTTATCCCGATCGATTCTTTATCTTTTGACTCGTGATGTTATCTTAGTC
A
Found at i:10447805 original size:110 final size:110
Alignment explanation
Indices: 10447612--10447817 Score: 306
Period size: 110 Copynumber: 1.9 Consensus size: 110
10447602 GTCAATTCTA
* *
10447612 TAAGACCTCCGGGCATAAATTTGATTCGCGATGTTATCCCGATCGATTCTTTATCTTTCGACTTG
1 TAAGACCTCCGGGCATAAATTTGATTCACGATGTTATCCCGATCGATTCTTTATCTTTCGACTCG
*
10447677 TGATGTTATCCCGATCGATTCTGTAAGACCTCCAAGTATGATTTT
66 TGATGTTATCCAGATCGATTCTGTAAGACCTCCAAGTATGATTTT
* * * **
10447722 TAAGACCTCTGGGCATAATTTTGATTTACGATGTTATCTTGATCGATTCTTTATCTTTCGACTCG
1 TAAGACCTCCGGGCATAAATTTGATTCACGATGTTATCCCGATCGATTCTTTATCTTTCGACTCG
* *
10447787 TGATGTTATCTTAG-TCGATTTTGTAAGACCT
66 TGATGTTATC-CAGATCGATTCTGTAAGACCT
10447818 TCGGGTATAA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
110 84 0.99
111 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.18, T:0.40
Consensus pattern (110 bp):
TAAGACCTCCGGGCATAAATTTGATTCACGATGTTATCCCGATCGATTCTTTATCTTTCGACTCG
TGATGTTATCCAGATCGATTCTGTAAGACCTCCAAGTATGATTTT
Found at i:10447830 original size:88 final size:88
Alignment explanation
Indices: 10447716--10447919 Score: 234
Period size: 88 Copynumber: 2.3 Consensus size: 88
10447706 CTCCAAGTAT
* *
10447716 GATTTT-TAAGACC-TCTGGGCATAATTTTGATTTACGATGTTATCTTGATCGA-TTCTTTATCT
1 GATTTTGTAAGACCTTC-GGGCATAATTTTGATTCACGATGTTATCCTGATCGATTTC-TTATCT
* * ** *
10447778 TTCGACTCGTGATGTTATCTTAGTC
64 TTCAACTCGCGATGTTATCCCAATC
* * * *
10447803 GATTTTGTAAGACCTTCGGGTATAATTTCGATTCGCGGTGTTATCCTGATCGATTTCTTATCTTT
1 GATTTTGTAAGACCTTCGGGCATAATTTTGATTCACGATGTTATCCTGATCGATTTCTTATCTTT
*
10447868 CAACTTGCGATGTTATCCCAATC
66 CAACTCGCGATGTTATCCCAATC
* * *
10447891 GATTCTGTAAGACCTCCGGGCATGATTTT
1 GATTTTGTAAGACCTTCGGGCATAATTTT
10447920 TAAGACGTTT
Statistics
Matches: 97, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
87 6 0.06
88 86 0.89
89 5 0.05
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.42
Consensus pattern (88 bp):
GATTTTGTAAGACCTTCGGGCATAATTTTGATTCACGATGTTATCCTGATCGATTTCTTATCTTT
CAACTCGCGATGTTATCCCAATC
Found at i:10448057 original size:133 final size:133
Alignment explanation
Indices: 10447891--10448146 Score: 361
Period size: 133 Copynumber: 1.9 Consensus size: 133
10447881 TATCCCAATC
* * * *
10447891 GATTCTGTAAGACCTCCGGGCATGATTTTTAAGACGTTTAGACAT-AATTTTATTGCGCGATGTT
1 GATTCTGTAAGACCTCCGGGCATGATTTTTAAGACCTCTAGACATAAATTCTATT-CACGATGTT
* * * * *
10447955 ATTCCGATCGATTCTTTATCTTTTGACTCGCGATGTTATCCCAGTCAATTTTGTAAGACCTCCGG
65 ATCCCGATCGATTCTTTATCTTTTGACTCACAATGTTATCCCAATCAATTCTGTAAGACCTCCGG
10448020 ACAT
130 ACAT
* * * *
10448024 GATTCTGTAATACCTCCGGGCATGATTTTTAAGACCTCTGGGCATAAATTCTATTCACGGTGTTA
1 GATTCTGTAAGACCTCCGGGCATGATTTTTAAGACCTCTAGACATAAATTCTATTCACGATGTTA
* *
10448089 TCCCGATCGATTTTTTATCTTTTGACTTACAATGTTATCCCAATCAATTCTGTAAGAC
66 TCCCGATCGATTCTTTATCTTTTGACTCACAATGTTATCCCAATCAATTCTGTAAGAC
10448147 TTATGCGCAT
Statistics
Matches: 107, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
133 99 0.93
134 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (133 bp):
GATTCTGTAAGACCTCCGGGCATGATTTTTAAGACCTCTAGACATAAATTCTATTCACGATGTTA
TCCCGATCGATTCTTTATCTTTTGACTCACAATGTTATCCCAATCAATTCTGTAAGACCTCCGGA
CAT
Found at i:10448066 original size:22 final size:22
Alignment explanation
Indices: 10448002--10448068 Score: 80
Period size: 23 Copynumber: 3.0 Consensus size: 22
10447992 ATCCCAGTCA
*
10448002 ATTTTGTAAGACCTCCGGACATG
1 ATTTT-TAAGACCTCCGGGCATG
* *
10448025 ATTCTGTAATACCTCCGGGCATG
1 ATT-TTTAAGACCTCCGGGCATG
*
10448048 ATTTTTAAGACCTCTGGGCAT
1 ATTTTTAAGACCTCCGGGCAT
10448069 AAATTCTATT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
22 15 0.41
23 21 0.57
24 1 0.03
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (22 bp):
ATTTTTAAGACCTCCGGGCATG
Found at i:10448251 original size:243 final size:243
Alignment explanation
Indices: 10447803--10448537 Score: 829
Period size: 243 Copynumber: 3.0 Consensus size: 243
10447793 TATCTTAGTC
* * * * *
10447803 GATTTTGTAAGACCTTCGGGTATAATTTCGATTCGCGGTGTTATCCTGATCGATTTCTTATCTTT
1 GATTTT-TAAGACCTTCGGGCATAAATTCTATTCGCGGTGTTATCCCGATCGATTTTTTATCTTT
* * * *
10447868 CAACTTGCGATGTTATCCCAATCGATTCTGTAAGACCTCCGGGCATGATTTTTAAGACGTTTAGA
65 CGACTTGCGATGTTATCCCAATCGATTCTGTAAGACCTCCGAGCATGATTTTTAAGACCTTTAGG
* * * * *
10447933 CATAATTT-TATTGCGCGATGTTAT-TCCGATCGATTCTTTATCTTTTGACTCGCGATGTTATCC
130 CATAATTTCAATT-CGCGATGTTATCT-CAATCGATTTTTTATCTTTTGACTCGTGATATTATCC
* *
10447996 CAGTCAATTTTGTAAGACCTCCGGACATGATTCTGTAATACCTCCGGGCAT
193 CAGTCGATTTTGTAAGACCTCCGGACATGATTCTGTAAGACCTCCGGGCAT
*
10448047 GATTTTTAAGACC-TCTGGGCATAAATTCTATTCACGGTGTTATCCCGATCGATTTTTTATCTTT
1 GATTTTTAAGACCTTC-GGGCATAAATTCTATTCGCGGTGTTATCCCGATCGATTTTTTATCTTT
* * * * * ** * *
10448111 TGACTTACAATGTTATCCCAATCAATTCTGTAAGACTTATGCGCATGATTTCTAAGACCTTTAGG
65 CGACTTGCGATGTTATCCCAATCGATTCTGTAAGACCTCCGAGCATGATTTTTAAGACCTTTAGG
* * * *
10448176 CATAATTTCAATTCGCGGTGTTATCTCAATCGATTTTTTATCTTTCGACTCATGATATTATCCTA
130 CATAATTTCAATTCGCGATGTTATCTCAATCGATTTTTTATCTTTTGACTCGTGATATTATCCCA
* **
10448241 GTCGATTTTGTAAGACCTCCGGACATGATTCTGTAAGACCTTCGAACAT
195 GTCGATTTTGTAAGACCTCCGGACATGATTCTGTAAGACCTCCGGGCAT
* * * * * * *
10448290 GATTTCTAAGACTTTCGGGCAT-AATTTTGATTCGTGATGTTATCTCGATCGATTCTTTATCTTT
1 GATTTTTAAGACCTTCGGGCATAAATTCT-ATTCGCGGTGTTATCCCGATCGATTTTTTATCTTT
* * * * ***
10448354 CGACTTGTGGTGTTATTCCAGTCGATTCTGTAAGACCTCCGAGCATGATTTTTAAGACCTCCGGG
65 CGACTTGCGATGTTATCCCAATCGATTCTGTAAGACCTCCGAGCATGATTTTTAAGACCTTTAGG
* * * * * *
10448419 CATAAATTCAATTCGCGATGTTATCCCGAAT-GATTTCTTAT-TTTATGACTTGTGGTATTGTCC
130 CATAATTTCAATTCGCGATGTTATCTC-AATCGATTTTTTATCTTT-TGACTCGTGATATTATCC
* * *
10448482 CAGTCGATTTTATAAGACCTCC-GAGTATGATT-TCTAAGACCTCCGGGCAT
193 CAGTCGATTTTGTAAGACCTCCGGA-CATGATTCTGTAAGACCTCCGGGCAT
*
10448532 AATTTT
1 GATTTT
10448538 GATTTGCGAT
Statistics
Matches: 409, Mismatches: 74, Indels: 18
0.82 0.15 0.04
Matches are distributed among these distances:
242 30 0.07
243 364 0.89
244 15 0.04
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (243 bp):
GATTTTTAAGACCTTCGGGCATAAATTCTATTCGCGGTGTTATCCCGATCGATTTTTTATCTTTC
GACTTGCGATGTTATCCCAATCGATTCTGTAAGACCTCCGAGCATGATTTTTAAGACCTTTAGGC
ATAATTTCAATTCGCGATGTTATCTCAATCGATTTTTTATCTTTTGACTCGTGATATTATCCCAG
TCGATTTTGTAAGACCTCCGGACATGATTCTGTAAGACCTCCGGGCAT
Found at i:10448268 original size:110 final size:109
Alignment explanation
Indices: 10448024--10448282 Score: 284
Period size: 110 Copynumber: 2.3 Consensus size: 109
10448014 CTCCGGACAT
* * * * *
10448024 GATTCTGTAATACCTCCGGGCATGATTTTTAAGACCTCTGGGCATAAATTCTATTCACGGTGTTA
1 GATTCTGTAAGACCTCC-GGCATGATTTCTAAGACCTTTAGGCATAAATTCAATTCACGGTGTTA
* * * *
10448089 TCCCGATCGATTTTTTATCTTTTGACTTACAATGTTATCCCAATC
65 TCCCAATCGATTTTTTATCTTTCGACTCACAATATTATCCCAATC
* * ** * *
10448134 AATTCTGTAAGACTTATGCGCATGATTTCTAAGACCTTTAGGCATAATTTCAATTCGCGGTGTTA
1 GATTCTGTAAGACCTCCG-GCATGATTTCTAAGACCTTTAGGCATAAATTCAATTCACGGTGTTA
* ** * *
10448199 TCTCAATCGATTTTTTATCTTTCGACTCATGATATTATCCTAGTC
65 TCCCAATCGATTTTTTATCTTTCGACTCACAATATTATCCCAATC
* *
10448244 GATTTTGTAAGACCTCCGGACATGATTCTGTAAGACCTT
1 GATTCTGTAAGACCTCCGG-CATGATT-TCTAAGACCTT
10448283 CGAACATGAT
Statistics
Matches: 120, Mismatches: 26, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
109 2 0.02
110 108 0.90
111 10 0.08
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (109 bp):
GATTCTGTAAGACCTCCGGCATGATTTCTAAGACCTTTAGGCATAAATTCAATTCACGGTGTTAT
CCCAATCGATTTTTTATCTTTCGACTCACAATATTATCCCAATC
Found at i:10448275 original size:23 final size:22
Alignment explanation
Indices: 10448247--10448301 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 22
10448237 CCTAGTCGAT
*
10448247 TTTGTAAGACCTCCGGACATGA
1 TTTGTAAGACCTCCGAACATGA
*
10448269 TTCTGTAAGACCTTCGAACATGA
1 TT-TGTAAGACCTCCGAACATGA
*
10448292 TTTCTAAGAC
1 TTTGTAAGAC
10448302 TTTCGGGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
22 9 0.31
23 20 0.69
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (22 bp):
TTTGTAAGACCTCCGAACATGA
Found at i:10448377 original size:133 final size:132
Alignment explanation
Indices: 10448154--10448413 Score: 346
Period size: 133 Copynumber: 2.0 Consensus size: 132
10448144 GACTTATGCG
* *
10448154 CATGATTTCTAAGACCTTTAGGCATAATTTCAATTCGCGGTGTTATCTCAATCGATTTTTTATCT
1 CATGATTTCTAAGACCTTTAGGCATAATTTCAATTCGCGATGTTATCTCAATCGATTCTTTATCT
*
10448219 TTCGACTCATGATATTATCCTAGTCGATTTTGTAAGACCTCCG-GACATGATTCTGTAAGACCTT
66 TTCGACTCATGATATTATCCTAGTCGATTCTGTAAGACCTCCGAG-CATGATT-TGTAAGACCTT
10448283 CGAA
129 CGAA
* ** * *
10448287 CATGATTTCTAAGA-CTTTCGGGCATAATTTTGATTCGTGATGTTATCTCGATCGATTCTTTATC
1 CATGATTTCTAAGACCTTT-AGGCATAATTTCAATTCGCGATGTTATCTCAATCGATTCTTTATC
** * * *
10448351 TTTCGACTTGTGGTGTTATTCC-AGTCGATTCTGTAAGACCTCCGAGCATGATTTTTAAGACCT
65 TTTCGACTCATGATATTA-TCCTAGTCGATTCTGTAAGACCTCCGAGCATGATTTGTAAGACCT
10448414 CCGGGCATAA
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
132 13 0.12
133 94 0.85
134 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (132 bp):
CATGATTTCTAAGACCTTTAGGCATAATTTCAATTCGCGATGTTATCTCAATCGATTCTTTATCT
TTCGACTCATGATATTATCCTAGTCGATTCTGTAAGACCTCCGAGCATGATTTGTAAGACCTTCG
AA
Found at i:10448536 original size:22 final size:22
Alignment explanation
Indices: 10448494--10448536 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10448484 GTCGATTTTA
* *
10448494 TAAGACCTCCGAGTATGATTTC
1 TAAGACCTCCGAGCATAATTTC
*
10448516 TAAGACCTCCGGGCATAATTT
1 TAAGACCTCCGAGCATAATTT
10448537 TGATTTGCGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (22 bp):
TAAGACCTCCGAGCATAATTTC
Found at i:10448596 original size:110 final size:109
Alignment explanation
Indices: 10448267--10448596 Score: 360
Period size: 110 Copynumber: 3.0 Consensus size: 109
10448257 CTCCGGACAT
* * * * * *
10448267 GATTCTGTAAGACCTTCGAACATGATTTCTAAGACTTTCGGGCATAATTTTGATTCGTGATGTTA
1 GATTCTATAAGACCTCCGAGCATGATTTCTAAGACCTCCGGGCATAATTTTGATTCGCGATGTTA
* * * * * *
10448332 TCTCGATCGATTCTTTATCTTTCGACTTGTGGTGTTATTCCAGTC
66 TCCCAATCGATTC-TTATTTTTTGACTTGTGGTATTAGTCCAGTC
* * * **
10448377 GATTCTGTAAGACCTCCGAGCATGATTTTTAAGACCTCCGGGCATAAATTCAATTCGCGATGTTA
1 GATTCTATAAGACCTCCGAGCATGATTTCTAAGACCTCCGGGCATAATTTTGATTCGCGATGTTA
*
10448442 TCCCGAAT-GATTTCTTATTTTATGACTTGTGGTATT-GTCCCAGTC
66 TCCC-AATCGA-TTCTTATTTTTTGACTTGTGGTATTAGT-CCAGTC
* * * **
10448487 GATTTTATAAGACCTCCGAGTATGATTTCTAAGACCTCCGGGCATAATTTTGATTTGCGATGTCC
1 GATTCTATAAGACCTCCGAGCATGATTTCTAAGACCTCCGGGCATAATTTTGATTCGCGATGTTA
**
10448552 TCCCAATCGATTCTTAATTTTTTGACTTACGGT-TTAGTCTCAGTC
66 TCCCAATCGATTCTT-ATTTTTTGACTTGTGGTATTAGTC-CAGTC
10448597 ATCGTATTTT
Statistics
Matches: 184, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
109 12 0.07
110 167 0.91
111 5 0.03
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.39
Consensus pattern (109 bp):
GATTCTATAAGACCTCCGAGCATGATTTCTAAGACCTCCGGGCATAATTTTGATTCGCGATGTTA
TCCCAATCGATTCTTATTTTTTGACTTGTGGTATTAGTCCAGTC
Found at i:10448881 original size:102 final size:102
Alignment explanation
Indices: 10448692--10448903 Score: 255
Period size: 102 Copynumber: 2.1 Consensus size: 102
10448682 TAATTCGCAG
* * *** * *
10448692 TTCAATCCCGATCTCTTTAATTCAAAATCGCAGTTTAATCTTGGTTGTTGTTATTTTTTAACTCG
1 TTCAATCCCGATCTCTTTAATTCAAAATCGCAGTTTAATCTCGATTGTTGTTAGCCTCTAACTCA
* *
10448757 TGATTTAATCTCGACCTCTTTATTCTTC-GATTTGCGA
66 TGATTTAATCTCAACCTCTTTATT-TTCTGACTTGCGA
* * *
10448794 TTCAATCTCGATCTCTTTAATTTAAAATCGTAGTTTAATCTCGATTGTTGTTAGCCTCTAACTCA
1 TTCAATCCCGATCTCTTTAATTCAAAATCGCAGTTTAATCTCGATTGTTGTTAGCCTCTAACTCA
* * * * *
10448859 TGGTTTATTCTCAATCTTTTTATTTTCTGACTTGTGA
66 TGATTTAATCTCAACCTCTTTATTTTCTGACTTGCGA
10448896 TTCAATCC
1 TTCAATCC
10448904 AAGTTAACAT
Statistics
Matches: 91, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
101 3 0.03
102 88 0.97
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.47
Consensus pattern (102 bp):
TTCAATCCCGATCTCTTTAATTCAAAATCGCAGTTTAATCTCGATTGTTGTTAGCCTCTAACTCA
TGATTTAATCTCAACCTCTTTATTTTCTGACTTGCGA
Found at i:10448971 original size:171 final size:171
Alignment explanation
Indices: 10448752--10449059 Score: 460
Period size: 171 Copynumber: 1.8 Consensus size: 171
10448742 TTATTTTTTA
*
10448752 ACTCGTGATTTAATCTCGACCTCTTTATTCTTCGATTTGCGATTCAATCTCGATCTCTTTAATTT
1 ACTCGTGATTTAATCTCGACCTCTTTATTCTTCGATTTGCGATTCAATCCCGATCTCTTTAATTT
* *
10448817 AAAATCGTAGTTTAATCTCGATTGTTGTTAGCCTCTAACTCATGGTTT-ATTCTCAATCTTTTTA
66 AAAATCATAGTTTAATCTCGATTGTTGTTAGCCTCTAACTCATGGTTTAATCCT-AATCTTTTTA
*
10448881 TTTTCTGACTTGTGATTCAATCCAAGTTAACATCATTTTCTG
130 TTCTCTGACTTGTGATTCAATCCAAGTTAACATCATTTTCTG
* * *
10448923 ACTCGTGGTTTAATCTCGATCTTTTTATTCTTCGATTCATG-G-TTCAATCCCGATCTCTTTAAT
1 ACTCGTGATTTAATCTCGACCTCTTTATTCTTCGATT--TGCGATTCAATCCCGATCTCTTTAAT
* * * * *
10448986 TTAAAATCATAGTTTAATCTCGATTGTTGTTATCTTCTGACTCGTGGTTTAATCCTGATCTTTTT
64 TTAAAATCATAGTTTAATCTCGATTGTTGTTAGCCTCTAACTCATGGTTTAATCCTAATCTTTTT
10449051 ATTCTCTGA
129 ATTCTCTGA
10449060 TTCGCAGTTC
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
171 115 0.94
172 5 0.04
173 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.12, T:0.46
Consensus pattern (171 bp):
ACTCGTGATTTAATCTCGACCTCTTTATTCTTCGATTTGCGATTCAATCCCGATCTCTTTAATTT
AAAATCATAGTTTAATCTCGATTGTTGTTAGCCTCTAACTCATGGTTTAATCCTAATCTTTTTAT
TCTCTGACTTGTGATTCAATCCAAGTTAACATCATTTTCTG
Found at i:10448977 original size:34 final size:34
Alignment explanation
Indices: 10448928--10449190 Score: 133
Period size: 34 Copynumber: 7.6 Consensus size: 34
10448918 TTCTGACTCG
*
10448928 TGGTTTAATCTCGATCTTTTTATTCTTCGATTCA
1 TGGTTTAATCCCGATCTTTTTATTCTTCGATTCA
* * * ** *
10448962 TGGTTCAATCCCGATCTCTTTAAT-TTAAAATCA
1 TGGTTTAATCCCGATCTTTTTATTCTTCGATTCA
* * * *
10448995 TAGTTTAATCTCGAT-TGTTGTTA-TCTTCTGACTCG
1 TGGTTTAATCCCGATCT-TT-TTATTCTTC-GATTCA
* *
10449030 TGGTTTAATCCTGATCTTTTTATTC-TCTGATTCG
1 TGGTTTAATCCCGATCTTTTTATTCTTC-GATTCA
** * * * * ** * *
10449064 CAGTTCAATCCCAATCTCTTTAAT-TTAAAATCG
1 TGGTTTAATCCCGATCTTTTTATTCTTCGATTCA
* ** * *
10449097 TAGTTTAATATCGAT-TGTTGTTGTTATCTTCTGACTCA
1 TGGTTTAATCCCGATCT-TT-TT-AT-TCTTC-GATTCA
*
10449135 TGGTTTAATCCCGATCTTTTTATTCTTTGATTCA
1 TGGTTTAATCCCGATCTTTTTATTCTTCGATTCA
*
10449169 CGGTTTAATCCCGATCTTTTTA
1 TGGTTTAATCCCGATCTTTTTA
10449191 ATTTAAAATC
Statistics
Matches: 167, Mismatches: 48, Indels: 28
0.69 0.20 0.12
Matches are distributed among these distances:
32 2 0.01
33 35 0.21
34 82 0.49
35 23 0.14
36 3 0.02
37 4 0.02
38 17 0.10
39 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.48
Consensus pattern (34 bp):
TGGTTTAATCCCGATCTTTTTATTCTTCGATTCA
Found at i:10449166 original size:105 final size:105
Alignment explanation
Indices: 10448918--10449358 Score: 591
Period size: 105 Copynumber: 4.2 Consensus size: 105
10448908 TAACATCATT
* * * *
10448918 TTCTGACTCGTGGTTTAATCTCGATCTTTTTATTCTTCGATTCATGGTTCAATCCCGATCTCTTT
1 TTCTGACTCATGGTTTAATCCCGATCTTTTTATTCTTTGATTCACGGTTCAATCCCGATCTCTTT
10448983 AATTTAAAATCATAGTTTAATCTCGA---TTGTTGTTATC
66 AATTTAAAATCATAGTTTAATCTCGATTGTTGTTGTTATC
* * * * * *
10449020 TTCTGACTCGTGGTTTAATCCTGATCTTTTTATTCTCTGATTCGCAGTTCAATCCCAATCTCTTT
1 TTCTGACTCATGGTTTAATCCCGATCTTTTTATTCTTTGATTCACGGTTCAATCCCGATCTCTTT
* *
10449085 AATTTAAAATCGTAGTTTAATATCGATTGTTGTTGTTATC
66 AATTTAAAATCATAGTTTAATCTCGATTGTTGTTGTTATC
* *
10449125 TTCTGACTCATGGTTTAATCCCGATCTTTTTATTCTTTGATTCACGGTTTAATCCCGATCTTTTT
1 TTCTGACTCATGGTTTAATCCCGATCTTTTTATTCTTTGATTCACGGTTCAATCCCGATCTCTTT
* *
10449190 AATTTAAAATCGTAGTTTAATCTAGATTGTTGTTGTTATC
66 AATTTAAAATCATAGTTTAATCTCGATTGTTGTTGTTATC
* * * * * * *
10449230 TTCTAACTCACGATTTAATCCTGGTCTCTTTTTTATTCTTTGATTCGCGGTTCAATCCGGATCTC
1 TTCTGACTCATGGTTTAATCC-CG-ATC-TTTTTATTCTTTGATTCACGGTTCAATCCCGATCTC
*
10449295 TTTAATTTAAAATCACAGTTTAATCTCGATTGTTGTTGTTATC
63 TTTAATTTAAAATCATAGTTTAATCTCGATTGTTGTTGTTATC
* * *
10449338 TTTTGACTCACGATTTAATCC
1 TTCTGACTCATGGTTTAATCC
10449359 ATATCTCTTT
Statistics
Matches: 299, Mismatches: 34, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
102 81 0.27
105 124 0.41
106 1 0.00
107 2 0.01
108 91 0.30
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.47
Consensus pattern (105 bp):
TTCTGACTCATGGTTTAATCCCGATCTTTTTATTCTTTGATTCACGGTTCAATCCCGATCTCTTT
AATTTAAAATCATAGTTTAATCTCGATTGTTGTTGTTATC
Found at i:10449347 original size:213 final size:207
Alignment explanation
Indices: 10448918--10449358 Score: 621
Period size: 213 Copynumber: 2.1 Consensus size: 207
10448908 TAACATCATT
* * *
10448918 TTCTGACTCGTGGTTTAATCTCGATCTTTTTATTCTTCGATTCATGGTTCAATCCCGATCTCTTT
1 TTCTGACTCATGGTTTAATCCCGATCTTTTTATTCTTCGATTCACGGTTCAATCCCGATCTCTTT
* * ** *
10448983 AATTTAAAATCATAGTTTAATCTCGATTGTTGTTATCTTCTGACTCGTGGTTTAATCCTGATCTT
66 AATTTAAAATCATAGTTTAATCTAGATTGTTGTTATCTTCTAACTCACGATTTAATCCTGATCTT
**
10449048 TTTATTCTCTGATTCGCAGTTCAATCCCAATCTCTTTAATTTAAAATCGTAGTTTAATATCGATT
131 TTTATTCTCTGATTCGCAGTTCAATCCCAATCTCTTTAATTTAAAATCACAGTTTAATATCGATT
10449113 GTTGTTGTTATC
196 GTTGTTGTTATC
* * *
10449125 TTCTGACTCATGGTTTAATCCCGATCTTTTTATTCTTTGATTCACGGTTTAATCCCGATCTTTTT
1 TTCTGACTCATGGTTTAATCCCGATCTTTTTATTCTTCGATTCACGGTTCAATCCCGATCTCTTT
*
10449190 AATTTAAAATCGTAGTTTAATCTAGATTGTTGTTGTTATCTTCTAACTCACGATTTAATCCTGGT
66 AATTTAAAATCATAGTTTAATCTAGA---TTGTTGTTATCTTCTAACTCACGATTTAATCCT-G-
* * * ** *
10449255 CTCTTTTTTATTCTTTGATTCGCGGTTCAATCCGGATCTCTTTAATTTAAAATCACAGTTTAATC
126 ATC-TTTTTATTCTCTGATTCGCAGTTCAATCCCAATCTCTTTAATTTAAAATCACAGTTTAATA
10449320 TCGATTGTTGTTGTTATC
190 TCGATTGTTGTTGTTATC
* * *
10449338 TTTTGACTCACGATTTAATCC
1 TTCTGACTCATGGTTTAATCC
10449359 ATATCTCTTT
Statistics
Matches: 205, Mismatches: 23, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
207 83 0.40
210 29 0.14
211 1 0.00
212 2 0.01
213 90 0.44
ACGTcount: A:0.22, C:0.18, G:0.13, T:0.47
Consensus pattern (207 bp):
TTCTGACTCATGGTTTAATCCCGATCTTTTTATTCTTCGATTCACGGTTCAATCCCGATCTCTTT
AATTTAAAATCATAGTTTAATCTAGATTGTTGTTATCTTCTAACTCACGATTTAATCCTGATCTT
TTTATTCTCTGATTCGCAGTTCAATCCCAATCTCTTTAATTTAAAATCACAGTTTAATATCGATT
GTTGTTGTTATC
Found at i:10449365 original size:71 final size:68
Alignment explanation
Indices: 10449290--10449437 Score: 208
Period size: 68 Copynumber: 2.1 Consensus size: 68
10449280 TTCAATCCGG
10449290 ATCTCTTTAATTTAAAATCACAGTTTAATCTCGATTGTTGTTGTTATCTTTTGACTCACGATTTA
1 ATCTCTTTAATTTAAAATCACAGTTTAATCTCGA---TTGTTGTTATCTTTTGACTCACGATTTA
10449355 AT-CCA
63 ATCCCA
** * * *
10449360 TATCTCTTTAATTTAAAATCGTAGTTTAATCTCGATTGTTGTTATTTTTTGACTCGCGGTTTAAT
1 -ATCTCTTTAATTTAAAATCACAGTTTAATCTCGATTGTTGTTATCTTTTGACTCACGATTTAAT
10449425 CCCA
65 CCCA
10449429 ATCTCTTTA
1 ATCTCTTTA
10449438 TTCTCTGATT
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
68 36 0.51
69 3 0.04
71 32 0.45
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (68 bp):
ATCTCTTTAATTTAAAATCACAGTTTAATCTCGATTGTTGTTATCTTTTGACTCACGATTTAATC
CCA
Found at i:10449436 original size:68 final size:69
Alignment explanation
Indices: 10449262--10449437 Score: 221
Period size: 71 Copynumber: 2.5 Consensus size: 69
10449252 GGTCTCTTTT
* * * **
10449262 TTATTCTTTGATTCGCGGTTCAATCCGGATCTCTTTAATTTAAAATCACAGTTTAATCTCGATTG
1 TTATTTTTTGACTCGCGGTTTAATCCCAATCTCTTTAATTTAAAATCACAGTTTAATCTCGA-T-
10449327 TTGTTG
64 TTGTTG
* * * **
10449333 TTATCTTTTGACTCACGATTTAAT-CCATATCTCTTTAATTTAAAATCGTAGTTTAATCTCGA-T
1 TTATTTTTTGACTCGCGGTTTAATCCCA-ATCTCTTTAATTTAAAATCACAGTTTAATCTCGATT
10449396 TGTTG
65 TGTTG
10449401 TTATTTTTTGACTCGCGGTTTAATCCCAATCTCTTTA
1 TTATTTTTTGACTCGCGGTTTAATCCCAATCTCTTTA
10449438 TTCTCTGATT
Statistics
Matches: 90, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
68 36 0.40
69 3 0.03
70 1 0.01
71 50 0.56
ACGTcount: A:0.23, C:0.18, G:0.12, T:0.47
Consensus pattern (69 bp):
TTATTTTTTGACTCGCGGTTTAATCCCAATCTCTTTAATTTAAAATCACAGTTTAATCTCGATTT
GTTG
Found at i:10449480 original size:173 final size:177
Alignment explanation
Indices: 10449160--10449504 Score: 464
Period size: 173 Copynumber: 2.0 Consensus size: 177
10449150 CTTTTTATTC
* * * * *
10449160 TTTGATTCACGGTTTAATCCCGATCTTTTTAATTTAAAATCGTAGTTTAATCTAGATTGTTGTTG
1 TTTGACTCACGATTTAATCCAGATCTCTTTAATTTAAAATCGTAGTTTAATCTAGATTGTTGTTA
*** * **
10449225 TTATCTTCTAACTCACGATTTAATCCTGGTCTCTTTTTTATTCTTTGATTCGCGGTTCAATCCGG
66 TTATCTTCTAACTCACGATTTAATCCCAATCTC--TTTTATTCTCTGATTCGCGGTTCAATCCCA
10449290 ATCTCTTTAATTTAAAATCACAGTTTAATCTCGATTGTTGTTGTTATCT
129 ATCTCTTTAATTTAAAATCACAGTTTAATCTCGATTGTTGTTGTTATCT
* *
10449339 TTTGACTCACGATTTAATCCATATCTCTTTAATTTAAAATCGTAGTTTAATCTCGATTGTTGTTA
1 TTTGACTCACGATTTAATCCAGATCTCTTTAATTTAAAATCGTAGTTTAATCTAGATTGTTGTTA
* * *
10449404 TT-T-TT-TGACTCGCGGTTTAATCCCAATCTC-TTTATTCTCTGATTCGCGGTTCAATCCCAAT
66 TTATCTTCTAACTCACGATTTAATCCCAATCTCTTTTATTCTCTGATTCGCGGTTCAATCCCAAT
** * *
10449465 CTCTTTAATTTAAAATCGTAGTTTAATCTTGGTTGTTGTT
131 CTCTTTAATTTAAAATCACAGTTTAATCTCGATTGTTGTT
10449505 ATTTTCTAAC
Statistics
Matches: 146, Mismatches: 20, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
173 64 0.44
176 19 0.13
177 2 0.01
178 1 0.01
179 60 0.41
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.47
Consensus pattern (177 bp):
TTTGACTCACGATTTAATCCAGATCTCTTTAATTTAAAATCGTAGTTTAATCTAGATTGTTGTTA
TTATCTTCTAACTCACGATTTAATCCCAATCTCTTTTATTCTCTGATTCGCGGTTCAATCCCAAT
CTCTTTAATTTAAAATCACAGTTTAATCTCGATTGTTGTTGTTATCT
Found at i:10449895 original size:12 final size:12
Alignment explanation
Indices: 10449878--10449907 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
10449868 CATTTAAGTT
10449878 TAATATTAATAA
1 TAATATTAATAA
*
10449890 TTATATTAATAA
1 TAATATTAATAA
10449902 TAATAT
1 TAATAT
10449908 ATATTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TAATATTAATAA
Found at i:10452849 original size:183 final size:183
Alignment explanation
Indices: 10452530--10452905 Score: 671
Period size: 183 Copynumber: 2.1 Consensus size: 183
10452520 AGAGCCAACT
* * * *
10452530 TATATAAATATACCCACTTTTGGTTTGGATTAATCTGAACTGATTCGGAATCGAATTTGTTCAGA
1 TATATATATAGACCCACTTTTGATTTGGATTAATCTGAACTGATTCAGAATCGAATTTGTTCAGA
*
10452595 ACTCATAAAAAGGATAAATTTTTTTAAATCTGATTTTTTCATTCATAAAATTTGAAATCGAAATT
66 ACTCATAAAAAGGATAAATTTTTTTAAATCTGATTTTTTCATTCATAAAATTTGAAATCAAAATT
* *
10452660 TTACTTAAAAAAAATTAAAATTTTTATTACTCGGATCAACAAACATTAATATA
131 TTACTTAAAAAAAATTAAAATTTTTATCACTCAGATCAACAAACATTAATATA
10452713 TATATATATAGACCCACTTTTGATTTGGATTAATCTGAACTGATTCAGAATCGAATTTGTTCAGA
1 TATATATATAGACCCACTTTTGATTTGGATTAATCTGAACTGATTCAGAATCGAATTTGTTCAGA
*
10452778 ACTCATAAAAAGGATAAATTTTTTTAAATCTGATTTTTTCATTCATAAAATTTTAAATCAAAATT
66 ACTCATAAAAAGGATAAATTTTTTTAAATCTGATTTTTTCATTCATAAAATTTGAAATCAAAATT
*
10452843 TTACTTAAAAAAAATTAAATTTTTTATCACTCAGATCAACAAACATTAATATA
131 TTACTTAAAAAAAATTAAAATTTTTATCACTCAGATCAACAAACATTAATATA
10452896 TATATATATA
1 TATATATATA
10452906 TATATATATA
Statistics
Matches: 184, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
183 184 1.00
ACGTcount: A:0.41, C:0.11, G:0.09, T:0.39
Consensus pattern (183 bp):
TATATATATAGACCCACTTTTGATTTGGATTAATCTGAACTGATTCAGAATCGAATTTGTTCAGA
ACTCATAAAAAGGATAAATTTTTTTAAATCTGATTTTTTCATTCATAAAATTTGAAATCAAAATT
TTACTTAAAAAAAATTAAAATTTTTATCACTCAGATCAACAAACATTAATATA
Found at i:10452898 original size:2 final size:2
Alignment explanation
Indices: 10452891--10452917 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10452881 ACAAACATTA
10452891 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
10452918 ATGATTCCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10455645 original size:17 final size:17
Alignment explanation
Indices: 10455623--10455656 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10455613 CATTTTTTTA
*
10455623 GAAATTAATGTTTGTTT
1 GAAATTAATGATTGTTT
*
10455640 GAAATTAGTGATTGTTT
1 GAAATTAATGATTGTTT
10455657 ATTGTGGCAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (17 bp):
GAAATTAATGATTGTTT
Found at i:10456596 original size:19 final size:20
Alignment explanation
Indices: 10456567--10456604 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
10456557 TCTGGTGTTT
*
10456567 TTTATTTTCTTTTTATTTTA
1 TTTATTTTCTTTATATTTTA
10456587 TTTA-TTTCTTTATATTTT
1 TTTATTTTCTTTATATTTT
10456605 CGAAAATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTATTTTCTTTATATTTTA
Found at i:10460673 original size:2 final size:2
Alignment explanation
Indices: 10460666--10460693 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10460656 TCAGCCTCCC
10460666 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10460694 GGCCCTGCCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.