Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 58 of 100
Found at i:10640561 original size:31 final size:32
Alignment explanation
Indices: 10640482--10640561 Score: 117
Period size: 32 Copynumber: 2.5 Consensus size: 32
10640472 GGGATCATTG
*
10640482 TAGCTCTGATACCACTTGTTGAAAAATTACCA
1 TAGCTCTGATACCACTTGTTGAAAAATCACCA
* * *
10640514 CAGCTCTGATATCACTTGTTGAGAAATCACCA
1 TAGCTCTGATACCACTTGTTGAAAAATCACCA
10640546 TAGCT-TGATACCACTT
1 TAGCTCTGATACCACTT
10640562 TCTTAGGCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
31 10 0.24
32 32 0.76
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (32 bp):
TAGCTCTGATACCACTTGTTGAAAAATCACCA
Found at i:10640719 original size:78 final size:78
Alignment explanation
Indices: 10640579--10640726 Score: 188
Period size: 78 Copynumber: 1.9 Consensus size: 78
10640569 CCAAATAGCT
* * * * * * **
10640579 TCAATCACATAAGAGACAATAATTTAACGTGATTAAGCCTAATTGGCCTACGTCTATGGATAAGA
1 TCAATCACACAAGAGACAATAATTTAACGTGATTAAGCCCAATCGACCTACATCCACAGATAAGA
10640644 AACAAATAATCAA
66 AACAAATAATCAA
* * * *
10640657 TCAATCACACAAGAGATAATAATTTAACGTGATTCAGCCCAATCGATCTGCATCCACAGATAAGA
1 TCAATCACACAAGAGACAATAATTTAACGTGATTAAGCCCAATCGACCTACATCCACAGATAAGA
10640722 AACAA
66 AACAA
10640727 GATCCACTAG
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
78 58 1.00
ACGTcount: A:0.43, C:0.20, G:0.14, T:0.24
Consensus pattern (78 bp):
TCAATCACACAAGAGACAATAATTTAACGTGATTAAGCCCAATCGACCTACATCCACAGATAAGA
AACAAATAATCAA
Found at i:10642142 original size:2 final size:2
Alignment explanation
Indices: 10642135--10642161 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10642125 AGTAACGCTT
10642135 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
10642162 TAATCCAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10646834 original size:17 final size:19
Alignment explanation
Indices: 10646814--10646855 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
10646804 ATTTTTATTT
10646814 TATAAAAATT-TAAAA-TA
1 TATAAAAATTATAAAATTA
10646831 TATAAAAATTAATAAAATTA
1 TATAAAAATT-ATAAAATTA
10646851 TATAA
1 TATAA
10646856 TTCAATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.45
19 5 0.23
20 7 0.32
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TATAAAAATTATAAAATTA
Found at i:10646938 original size:13 final size:13
Alignment explanation
Indices: 10646906--10646934 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10646896 TTTAATTTAA
10646906 ATTTAATATATAT
1 ATTTAATATATAT
10646919 ATTTAATATAT-T
1 ATTTAATATATAT
10646931 ATTT
1 ATTT
10646935 TAATTTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTTAATATATAT
Found at i:10652135 original size:2 final size:2
Alignment explanation
Indices: 10652128--10652152 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10652118 CCTAGGCAGT
10652128 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
10652153 TGTGCTCATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10657029 original size:23 final size:23
Alignment explanation
Indices: 10656999--10657044 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
10656989 CAATTTCTAA
* *
10656999 AGTATAATAAATCTGATGGAATT
1 AGTATAATAAATCCGATGAAATT
10657022 AGTATAATAAATCCGATGAAATT
1 AGTATAATAAATCCGATGAAATT
10657045 TTTTTAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.46, C:0.07, G:0.15, T:0.33
Consensus pattern (23 bp):
AGTATAATAAATCCGATGAAATT
Found at i:10659091 original size:46 final size:46
Alignment explanation
Indices: 10659040--10659133 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
10659030 ATCGTATAAT
10659040 ATATTTGGATCGAAGGGAGATGAAGGAAAAAAAGTAAAGTAAATGA
1 ATATTTGGATCGAAGGGAGATGAAGGAAAAAAAGTAAAGTAAATGA
*
10659086 ATATTTGGATTGAAGGGAGATGAAGGAAAAAAAGTAAAGTAAATGA
1 ATATTTGGATCGAAGGGAGATGAAGGAAAAAAAGTAAAGTAAATGA
10659132 AT
1 AT
10659134 GTAAAGAAAA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.50, C:0.01, G:0.28, T:0.21
Consensus pattern (46 bp):
ATATTTGGATCGAAGGGAGATGAAGGAAAAAAAGTAAAGTAAATGA
Found at i:10660430 original size:29 final size:29
Alignment explanation
Indices: 10660388--10660443 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
10660378 TCCACTGACT
10660388 TCTTTTTCTCTTCCCATTTTCCTATTAAG
1 TCTTTTTCTCTTCCCATTTTCCTATTAAG
*
10660417 TCTTTTTCTCTTCCTATTTTCCTATTA
1 TCTTTTTCTCTTCCCATTTTCCTATTA
10660444 CCAAACAGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.12, C:0.27, G:0.02, T:0.59
Consensus pattern (29 bp):
TCTTTTTCTCTTCCCATTTTCCTATTAAG
Found at i:10660590 original size:8 final size:8
Alignment explanation
Indices: 10660562--10660614 Score: 61
Period size: 8 Copynumber: 6.6 Consensus size: 8
10660552 GTATAAAAGG
10660562 TATATACA
1 TATATACA
*
10660570 TACATACA
1 TATATACA
* *
10660578 AATATATA
1 TATATACA
*
10660586 TATATATA
1 TATATACA
10660594 TATATACA
1 TATATACA
*
10660602 TAAATACA
1 TATATACA
10660610 TATAT
1 TATAT
10660615 TTATCCAGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
8 37 1.00
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (8 bp):
TATATACA
Found at i:10668052 original size:26 final size:25
Alignment explanation
Indices: 10668023--10668082 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
10668013 AGATAAAAAA
10668023 TAATATAATAATATATAAACTAATAT
1 TAATATAATAATATATAAA-TAATAT
* ** *
10668049 TAATATTAATATTATATTTATATTAT
1 TAATA-TAATAATATATAAATAATAT
10668075 TAATATAA
1 TAATATAA
10668083 AAAATAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 15 0.52
27 11 0.38
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (25 bp):
TAATATAATAATATATAAATAATAT
Found at i:10668081 original size:17 final size:17
Alignment explanation
Indices: 10668021--10668081 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
10668011 AAAGATAAAA
*
10668021 AATAATATAATAATATAT
1 AATAATATATTAATAT-T
*
10668039 AA-ACTAATATTAATATT
1 AATAAT-ATATTAATATT
* *
10668056 AATATTATATTTATATT
1 AATAATATATTAATATT
*
10668073 ATTAATATA
1 AATAATATA
10668082 AAAAATAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
17 22 0.63
18 13 0.37
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
AATAATATATTAATATT
Found at i:10672412 original size:31 final size:30
Alignment explanation
Indices: 10672362--10672421 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
10672352 AAAAAATTGA
* * *
10672362 TAATTAAATTAATTGATTTTTATTCAATAAG
1 TAATTAAATCAATTAATTTTT-TTAAATAAG
*
10672393 TAATTAAATCGATTAATTTTTTTAAATAA
1 TAATTAAATCAATTAATTTTTTTAAATAA
10672422 TCGATTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 7 0.28
31 18 0.72
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.48
Consensus pattern (30 bp):
TAATTAAATCAATTAATTTTTTTAAATAAG
Found at i:10673159 original size:23 final size:23
Alignment explanation
Indices: 10673129--10673174 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
10673119 TGCCAAGGGG
10673129 GAATGTCTTAGAAGAAGTGGTGC
1 GAATGTCTTAGAAGAAGTGGTGC
10673152 GAATGTCTTAGAAGAAGTGGTGC
1 GAATGTCTTAGAAGAAGTGGTGC
10673175 TTCTTGTTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.35, T:0.26
Consensus pattern (23 bp):
GAATGTCTTAGAAGAAGTGGTGC
Found at i:10673558 original size:19 final size:19
Alignment explanation
Indices: 10673542--10673585 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
10673532 TGTATTTAGT
10673542 TAATTTCTTTATATTTATC
1 TAATTTCTTTATATTTATC
* *
10673561 TAATTTTTTTAAAATTTATC
1 TAATTTCTTT-ATATTTATC
*
10673581 AAATT
1 TAATT
10673586 ATTTCAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (19 bp):
TAATTTCTTTATATTTATC
Found at i:10673594 original size:20 final size:20
Alignment explanation
Indices: 10673554--10673594 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
10673544 ATTTCTTTAT
* * *
10673554 ATTTATCTAATTTTTTTAAA
1 ATTTATCAAATTATTTCAAA
10673574 ATTTATCAAATTATTTCAAA
1 ATTTATCAAATTATTTCAAA
10673594 A
1 A
10673595 AAAAGAAAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTTATCAAATTATTTCAAA
Found at i:10674865 original size:3 final size:3
Alignment explanation
Indices: 10674857--10674883 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
10674847 GAATTTTCTA
10674857 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
10674884 TTTTCAATCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10681157 original size:32 final size:32
Alignment explanation
Indices: 10681120--10681187 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
10681110 CTTTATAACT
* * * *
10681120 TTGGTTCAGTCTGGTTACCTTTATTTTCGACC
1 TTGGTTCAGTCTGATCACCTCTATCTTCGACC
* *
10681152 TTGGTTTAGTCTGATCACCTCTATCTTCGATC
1 TTGGTTCAGTCTGATCACCTCTATCTTCGACC
10681184 TTGG
1 TTGG
10681188 CTCAATCCGA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.13, C:0.22, G:0.19, T:0.46
Consensus pattern (32 bp):
TTGGTTCAGTCTGATCACCTCTATCTTCGACC
Found at i:10681565 original size:32 final size:32
Alignment explanation
Indices: 10681501--10681567 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
10681491 CTTCGGTCAC
* *
10681501 TTTCATTTTTAACCTTGGTTAAGTATGGTCAT
1 TTTCATTTATAACCTTGGTTAAGTATGATCAT
* * *
10681533 TTTCATTTATGACCTTGGTTCAGTCTGATCAT
1 TTTCATTTATAACCTTGGTTAAGTATGATCAT
10681565 TTT
1 TTT
10681568 TGTTTTTGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.19, C:0.15, G:0.15, T:0.51
Consensus pattern (32 bp):
TTTCATTTATAACCTTGGTTAAGTATGATCAT
Found at i:10681643 original size:96 final size:96
Alignment explanation
Indices: 10681543--10681798 Score: 311
Period size: 96 Copynumber: 2.7 Consensus size: 96
10681533 TTTCATTTAT
* * * *
10681543 GACCTTGGTTCAGTCTGATCATTTTTGTTTTTGACTCTAGCTCAATTTGGTCACTTTCATTTTTT
1 GACCTTGGTTCAGTCTGATTATTTTTATTTTTGACCCTAGCTCAATTTGATCACTTTCATTTTTT
* * * * *
10681608 ACTTTGGCTCAATTCGGTTATCTTTATGTTC
66 ACCTTGACTCAATCCAGTCATCTTTATGTTC
* *
10681639 GACCTTGGTTTAGTCT-AGTTATTTTTATTTTTGACCCTTA-CTCAGTTTGATCACTTTCATTTT
1 GACCTTGGTTCAGTCTGA-TTATTTTTATTTTTGACCC-TAGCTCAATTTGATCACTTTCATTTT
* * *
10681702 TTACCTTGACTTAGTCCAGTCATCTTTATTTTC
64 TTACCTTGACTCAATCCAGTCATCTTTATGTTC
* * *
10681735 AACCTTGGTTCAGT-TCGATTATTTTTATTTTTGACCCTAGCTCAATTCGACCACTTTCATTTTT
1 GACCTTGGTTCAGTCT-GATTATTTTTATTTTTGACCCTAGCTCAATTTGATCACTTTCATTTTT
10681799 GAACTTAGCT
Statistics
Matches: 136, Mismatches: 19, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
95 4 0.03
96 129 0.95
97 3 0.02
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.50
Consensus pattern (96 bp):
GACCTTGGTTCAGTCTGATTATTTTTATTTTTGACCCTAGCTCAATTTGATCACTTTCATTTTTT
ACCTTGACTCAATCCAGTCATCTTTATGTTC
Found at i:10681797 original size:32 final size:32
Alignment explanation
Indices: 10681761--10681836 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
10681751 GATTATTTTT
*
10681761 ATTTTTGACCCTAGCTCAAT-TCGACCACTTTC
1 ATTTTTGAACCTAGCTCAATCT-GACCACTTTC
* * *
10681793 ATTTTTGAACTTAGCTTAATCTGATCACTTTC
1 ATTTTTGAACCTAGCTCAATCTGACCACTTTC
*
10681825 ATTTTTGTACCT
1 ATTTTTGAACCT
10681837 CGTATAGACT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
32 36 0.97
33 1 0.03
ACGTcount: A:0.22, C:0.24, G:0.09, T:0.45
Consensus pattern (32 bp):
ATTTTTGAACCTAGCTCAATCTGACCACTTTC
Found at i:10681829 original size:96 final size:93
Alignment explanation
Indices: 10681450--10681829 Score: 277
Period size: 96 Copynumber: 4.0 Consensus size: 93
10681440 TTTTTTTTAT
* * * * * * * * *
10681450 CTTGGTTTAGTCTGATCATTTTTATTTTCGAGCCTAGTTTACTTCGGTCACTTTCATTTTTAACC
1 CTTGGTTCAGTC-GATTATTTTTATTTTTGACCCTAGCTCAATTTGATCACTTTCATTTTTAA-C
* * * *
10681515 TTGGTTAAGTATGGTCAT-TTTCATTTAT-GAC
64 TTGCTTAA-TCTGATCATCTTT-ATTT-TCAAC
* * * * *
10681546 CTTGGTTCAGTCTGATCATTTTTGTTTTTGACTCTAGCTCAATTTGGTCACTTTCATTTTTTACT
1 CTTGGTTCAGTC-GATTATTTTTATTTTTGACCCTAGCTCAATTTGATCACTTTCATTTTTAAC-
* * * * *
10681611 TTGGCTCAAT-TCGGTTATCTTTATGTTCGAC
64 TT-GCTTAATCT-GATCATCTTTATTTTCAAC
* * * *
10681642 CTTGGTTTAGTCTAGTTATTTTTATTTTTGACCCTTA-CTCAGTTTGATCACTTTCATTTTTTAC
1 CTTGGTTCAGTCGA-TTATTTTTATTTTTGACCC-TAGCTCAATTTGATCACTTTCA-TTTTTAA
* *
10681706 CTTGACTTAGTC-CAGTCATCTTTATTTTCAAC
63 CTTG-CTTAATCTGA-TCATCTTTATTTTCAAC
* *
10681738 CTTGGTTCAGTTCGATTATTTTTATTTTTGACCCTAGCTCAATTCGACCACTTTCATTTTTGAAC
1 CTTGGTTCAG-TCGATTATTTTTATTTTTGACCCTAGCTCAATTTGATCACTTTCATTTTT-AAC
10681803 TTAGCTTAATCTGATCA-CTTTCATTTT
64 TT-GCTTAATCTGATCATCTTT-ATTTT
10681830 TGTACCTCGT
Statistics
Matches: 229, Mismatches: 38, Indels: 34
0.76 0.13 0.11
Matches are distributed among these distances:
95 16 0.07
96 193 0.84
97 20 0.09
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.49
Consensus pattern (93 bp):
CTTGGTTCAGTCGATTATTTTTATTTTTGACCCTAGCTCAATTTGATCACTTTCATTTTTAACTT
GCTTAATCTGATCATCTTTATTTTCAAC
Found at i:10681971 original size:34 final size:33
Alignment explanation
Indices: 10681918--10682032 Score: 113
Period size: 33 Copynumber: 3.5 Consensus size: 33
10681908 AGTCCAAATT
* *
10681918 AAGTCATTTTATTTTTTGACTTCCGCTAAGACC
1 AAGTCATTTCATTTTTTGACTTCAGCTAAGACC
** * *
10681951 AAGTCATTTTCATTTTTTGACTTTGGCTAAGTCT
1 AAGTCA-TTTCATTTTTTGACTTCAGCTAAGACC
** * * **
10681985 AAGTCATACCATTTTCTAACTTCAATTAAGACC
1 AAGTCATTTCATTTTTTGACTTCAGCTAAGACC
10682018 AAGTCATTTCATTTT
1 AAGTCATTTCATTTT
10682033 GGCCTTGAGC
Statistics
Matches: 64, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
33 36 0.56
34 28 0.44
ACGTcount: A:0.27, C:0.19, G:0.10, T:0.43
Consensus pattern (33 bp):
AAGTCATTTCATTTTTTGACTTCAGCTAAGACC
Found at i:10682375 original size:19 final size:18
Alignment explanation
Indices: 10682351--10682387 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
10682341 TTTTTAATTG
*
10682351 TATTTATTTAATTTCTTTA
1 TATTTATCTAATTT-TTTA
10682370 TATTTATCTAATTTTTTA
1 TATTTATCTAATTTTTTA
10682388 AAATTTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (18 bp):
TATTTATCTAATTTTTTA
Found at i:10682393 original size:19 final size:19
Alignment explanation
Indices: 10682352--10682395 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
10682342 TTTTAATTGT
* *
10682352 ATTTATTTAATTTCTTTAT
1 ATTTATCTAATTTCTTTAA
10682371 ATTTATCTAATTT-TTTAAA
1 ATTTATCTAATTTCTTT-AA
10682390 ATTTAT
1 ATTTAT
10682396 TAGGTTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
ATTTATCTAATTTCTTTAA
Found at i:10683557 original size:63 final size:58
Alignment explanation
Indices: 10683489--10683617 Score: 145
Period size: 62 Copynumber: 2.1 Consensus size: 58
10683479 GAACGAAAAT
* * *
10683489 ATTTTTTTTTCCAA-ATAAATATATGAA-TCTAACCAAACAATTGAAAGATTTTCATGGATTAA
1 ATTTTTTTTTTCAATATAAAT-TATAAATTCT-ACCAAAC-ATTGAAA-ATTTTCAT--AATAA
*
10683551 ATTTTTTTTTTCAATTTTAAATTATAAATTCTACCAAACATTGAAAATTTTCATAATAA
1 ATTTTTTTTTTCAA-TATAAATTATAAATTCTACCAAACATTGAAAATTTTCATAATAA
10683610 ATTTTTTT
1 ATTTTTTT
10683618 AAAATAAATA
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
59 12 0.20
61 8 0.13
62 20 0.33
63 12 0.20
64 8 0.13
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.46
Consensus pattern (58 bp):
ATTTTTTTTTTCAATATAAATTATAAATTCTACCAAACATTGAAAATTTTCATAATAA
Found at i:10696370 original size:357 final size:354
Alignment explanation
Indices: 10695698--10696592 Score: 1008
Period size: 357 Copynumber: 2.5 Consensus size: 354
10695688 AACAGATCGT
* ** * * * * *
10695698 CACATAAATTCTAACACTATTATTGAAGGTGTATATCCAACAAAGACGTCTTTAATAATTTATAT
1 CACATAAATTCTAACACTGTTATTGAAGGTGTATATTTAAGATAGATGCCTTTAATAATTTCTAT
* * * * * *
10695763 CACAGTTTGTAGTTAATTACTGAAGACAATTACAGAAAACAATGCTTTCAATAATTTTTCTCAAA
66 CACAGTTTGTAGATAATAACTGAAGGC-ATTGCA-AAAACAACGCCTTCAATAATTTTTCT-AAA
** * * * * * *
10695828 AAAATTTTTTGGATTATTAAATGTATCTTTTATTATGACACGTCTTCAATATACCACGATAGTAA
128 AAAATTTTTCAGATTATTAAAGGCATATTTTATTATGAAACGCCTTCAATATACCAAGATAGTAA
* * *
10695893 TGGAAGGTGTTTATTAGAAAAAGTACCTTCAATATACCTTTAAACTTAGTAATCCATTAGTGAAG
193 TGAAAGGTGTTTATTAGAAAAAGCACCTTCAATATACCTTTAAACTTAGTAATCCATTAGTAAAG
* * * * * * * *
10695958 GTGTTTGTTAATAATAGATGCCTTCAAAATTTTTTCATTAAATGTTTTGAGAATTATTAAATGTG
258 GTGTTTGTTAATAACAGACGCCTTAAAAAATTTTTCACTAAATATTTTAAGAATTATTAAAGGTG
* * * * *
10696023 TCTTCTACTGTCAAATGCTTTTTATATA-TCAC
323 TCTTCTACTATCAAATACCTTCTATACACT-AC
* * * *
10696055 CACACAAATTTTAACACTGTTATTGAAAGTGTATATTTAAGATAGATGCCTTTAATCATTTCTAT
1 CACATAAATTCTAACACTGTTATTGAAGGTGTATATTTAAGATAGATGCCTTTAATAATTTCTAT
*
10696120 CATAGTTTGTAGATAATAACTGAAGGCAGTTGCATAAAACAACGCCTTCAATAATTTTTCTAAAA
66 CACAGTTTGTAGATAATAACTGAAGGCA-TTGCA-AAAACAACGCCTTCAATAATTTTTCTAAAA
* * *
10696185 AAATTTTTACAGATTTTTAAAGGCGTATTTTATTAT-AAACGACCTTCAATATACCAAGATGGTA
129 AAATTTTT-CAGATTATTAAAGGCATATTTTATTATGAAACG-CCTTCAATATACCAAGATAGTA
* * * *
10696249 ATGAAAGGTGTTTATTAGAAAATGCCCCTTCAATATACCTTTAAACTTTGTAATCCATTATTAAA
192 ATGAAAGGTGTTTATTAGAAAAAGCACCTTCAATATACCTTTAAACTTAGTAATCCATTAGTAAA
*
10696314 TGTGTTTGTTAATAACAGACGCCTTAAAAAATTTTTCACTAAATATTTTAAGAATTATTAAAGGT
257 GGTGTTTGTTAATAACAGACGCCTTAAAAAATTTTTCACTAAATATTTTAAGAATTATTAAAGGT
* *
10696379 GTCTTCTACTATTAAATACCTTCTATACACTGC
322 GTCTTCTACTATCAAATACCTTCTATACACTAC
* ** * * *
10696412 CACATATATTCTAACACTGTTATTGAAGGCATATATTTAAGATAGATGCTTTTAATAATTCCTAC
1 CACATAAATTCTAACACTGTTATTGAAGGTGTATATTTAAGATAGATGCCTTTAATAATTTCTAT
* * * * *
10696477 CACAGTTTATAGATAATAATTGAAAGTG-ATTGCGAAAAATAACGCCTTCAATAATTTCTCTCAA
66 CACAGTTTGTAGATAATAACTG-AAG-GCATTGC-AAAAACAACGCCTTCAATAATTTTTCTAAA
* * * * *
10696541 AACATTTTAGT-GGATGATTAAAGGTATCTTTTATTAT-AAACCGCCTTCAATA
128 AAAATTTT--TCAGATTATTAAAGGCATATTTTATTATGAAA-CGCCTTCAATA
10696593 AATTGTTATA
Statistics
Matches: 451, Mismatches: 77, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
356 17 0.04
357 424 0.94
358 8 0.02
359 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (354 bp):
CACATAAATTCTAACACTGTTATTGAAGGTGTATATTTAAGATAGATGCCTTTAATAATTTCTAT
CACAGTTTGTAGATAATAACTGAAGGCATTGCAAAAACAACGCCTTCAATAATTTTTCTAAAAAA
ATTTTTCAGATTATTAAAGGCATATTTTATTATGAAACGCCTTCAATATACCAAGATAGTAATGA
AAGGTGTTTATTAGAAAAAGCACCTTCAATATACCTTTAAACTTAGTAATCCATTAGTAAAGGTG
TTTGTTAATAACAGACGCCTTAAAAAATTTTTCACTAAATATTTTAAGAATTATTAAAGGTGTCT
TCTACTATCAAATACCTTCTATACACTAC
Found at i:10705534 original size:11 final size:11
Alignment explanation
Indices: 10705518--10705572 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
10705508 ATTAACAACC
10705518 TAATAATAAAT
1 TAATAATAAAT
*
10705529 TAATAATAACT
1 TAATAATAAAT
10705540 TAATAATAAAT
1 TAATAATAAAT
* * *
10705551 TAGTGATAATT
1 TAATAATAAAT
*
10705562 TAATAGTAAAT
1 TAATAATAAAT
10705573 CAAATTTAGT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.55, C:0.02, G:0.05, T:0.38
Consensus pattern (11 bp):
TAATAATAAAT
Found at i:10705559 original size:22 final size:22
Alignment explanation
Indices: 10705466--10705572 Score: 79
Period size: 22 Copynumber: 4.9 Consensus size: 22
10705456 ACTAAATCAA
* * *
10705466 TAATAACTTAACAAAAAATAAG
1 TAATAACTTAATAATAAATTAG
* * ** * *
10705488 TGATAACTTCATTGTTAATTAT
1 TAATAACTTAATAATAAATTAG
* * *
10705510 TAACAACCTAATAATAAATTAA
1 TAATAACTTAATAATAAATTAG
10705532 TAATAACTTAATAATAAATTAG
1 TAATAACTTAATAATAAATTAG
* * *
10705554 TGATAATTTAATAGTAAAT
1 TAATAACTTAATAATAAAT
10705573 CAAATTTAGT
Statistics
Matches: 62, Mismatches: 23, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
22 62 1.00
ACGTcount: A:0.51, C:0.07, G:0.06, T:0.36
Consensus pattern (22 bp):
TAATAACTTAATAATAAATTAG
Found at i:10705604 original size:22 final size:24
Alignment explanation
Indices: 10705554--10705604 Score: 56
Period size: 22 Copynumber: 2.3 Consensus size: 24
10705544 AATAAATTAG
*
10705554 TGATAATTTAATAGTAAATCAAAT
1 TGATAGTTTAATAGTAAATCAAAT
*
10705578 T--TAGTTTAATAGT-AAT-TAAT
1 TGATAGTTTAATAGTAAATCAAAT
10705598 TGATAGT
1 TGATAGT
10705605 AGTTATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
20 4 0.17
21 3 0.13
22 15 0.65
24 1 0.04
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.43
Consensus pattern (24 bp):
TGATAGTTTAATAGTAAATCAAAT
Found at i:10705672 original size:22 final size:22
Alignment explanation
Indices: 10705619--10706002 Score: 136
Period size: 22 Copynumber: 17.7 Consensus size: 22
10705609 ATTAATTGAA
* * *
10705619 AACTTAAAATTAAATCAGT-AT
1 AACTTAATAGTAAATCATTAAT
*
10705640 AACTTAGTAGTAAATCATTAAT
1 AACTTAATAGTAAATCATTAAT
* * *
10705662 AACATAATAGTTAATCAATAAT
1 AACTTAATAGTAAATCATTAAT
10705684 AACTTAATAGTAAATCATTCAA-
1 AACTTAATAGTAAATCATT-AAT
* *
10705706 AATTTAATA-TAAAAT-AGTAAT
1 AACTTAATAGT-AAATCATTAAT
* *
10705727 AACTCT-GTAGTAAATCATAAAT
1 AACT-TAATAGTAAATCATTAAT
* * * *
10705749 AATTTAGT-GATAAATCAATATT
1 AACTTAATAG-TAAATCATTAAT
* **
10705771 AATTTTGT-GATAAAT-AGTTAA-
1 AACTTAATAG-TAAATCA-TTAAT
* * * **
10705792 AAATTAAATAATAAATCAATGGT
1 AACTT-AATAGTAAATCATTAAT
* * *
10705815 AACATACTAATAAATACA-TAA-
1 AACTTAATAGTAAAT-CATTAAT
*
10705836 AACTATAATAGTAAATCATTGAT
1 AACT-TAATAGTAAATCATTAAT
* *
10705859 AA-TT--TAGT-AATAAATTGAT
1 AACTTAATAGTAAAT-CATTAAT
* *
10705878 AACTTAATAATAAA-CAACTAAT
1 AACTTAATAGTAAATC-ATTAAT
* *
10705900 AACGTAATAGTAAATTATTAAT
1 AACTTAATAGTAAATCATTAAT
* * * *
10705922 AACTTAGTTA-TAAATAAGTGAT
1 AACTTA-ATAGTAAATCATTAAT
* * *
10705944 AATTTAGTAGTAAATCACTAAT
1 AACTTAATAGTAAATCATTAAT
* * *
10705966 AACGTAATAATAAATTATTAAT
1 AACTTAATAGTAAATCATTAAT
* *
10705988 AACTTAGTTGTAAAT
1 AACTTAATAGTAAAT
10706003 TAATGATAAT
Statistics
Matches: 267, Mismatches: 69, Indels: 53
0.69 0.18 0.14
Matches are distributed among these distances:
18 3 0.01
19 12 0.04
20 4 0.01
21 42 0.16
22 192 0.72
23 14 0.05
ACGTcount: A:0.50, C:0.07, G:0.08, T:0.35
Consensus pattern (22 bp):
AACTTAATAGTAAATCATTAAT
Found at i:10705875 original size:19 final size:19
Alignment explanation
Indices: 10705853--10705891 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
10705843 ATAGTAAATC
* *
10705853 ATTGATAATTTAGTAATAA
1 ATTGATAACTTAATAATAA
10705872 ATTGATAACTTAATAATAA
1 ATTGATAACTTAATAATAA
10705891 A
1 A
10705892 CAACTAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (19 bp):
ATTGATAACTTAATAATAA
Found at i:10705980 original size:66 final size:66
Alignment explanation
Indices: 10705841--10706024 Score: 225
Period size: 66 Copynumber: 2.8 Consensus size: 66
10705831 CATAAAACTA
* * * * * * *
10705841 TAATAGTAAATCATTGATAATTTAGTAATAAA-T--TGATAACTTAATAATAAA-CAACTAATAA
1 TAATAATAAATTATTAATAACTTAGTTATAAATTAATGATAATTTAGTAATAAATC-ACTAATAA
10705902 CG
65 CG
* *
10705904 TAATAGTAAATTATTAATAACTTAGTTATAAA-TAAGTGATAATTTAGTAGTAAATCACTAATAA
1 TAATAATAAATTATTAATAACTTAGTTATAAATTAA-TGATAATTTAGTAATAAATCACTAATAA
10705968 CG
65 CG
*
10705970 TAATAATAAATTATTAATAACTTAGTTGTAAATTAATGATAATTTAGTAATAAAT
1 TAATAATAAATTATTAATAACTTAGTTATAAATTAATGATAATTTAGTAATAAAT
10706025 GAATTAATCA
Statistics
Matches: 106, Mismatches: 10, Indels: 7
0.86 0.08 0.06
Matches are distributed among these distances:
63 29 0.27
66 73 0.69
67 4 0.04
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (66 bp):
TAATAATAAATTATTAATAACTTAGTTATAAATTAATGATAATTTAGTAATAAATCACTAATAAC
G
Found at i:10706003 original size:22 final size:22
Alignment explanation
Indices: 10705896--10706024 Score: 98
Period size: 22 Copynumber: 5.9 Consensus size: 22
10705886 AATAAACAAC
* *
10705896 TAATAACGTAATAGTAAATTAT
1 TAATAACTTAGTAGTAAATTAT
* *
10705918 TAATAACTTAGTTA-TAAATAAG
1 TAATAACTTAG-TAGTAAATTAT
* * * *
10705940 TGATAATTTAGTAGTAAATCAC
1 TAATAACTTAGTAGTAAATTAT
* * *
10705962 TAATAACGTAATAATAAATTAT
1 TAATAACTTAGTAGTAAATTAT
* *
10705984 TAATAACTTAGTTGTAAATTAA
1 TAATAACTTAGTAGTAAATTAT
* * *
10706006 TGATAATTTAGTAATAAAT
1 TAATAACTTAGTAGTAAAT
10706025 GAATTAATCA
Statistics
Matches: 81, Mismatches: 24, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
21 2 0.02
22 77 0.95
23 2 0.02
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (22 bp):
TAATAACTTAGTAGTAAATTAT
Found at i:10706203 original size:22 final size:22
Alignment explanation
Indices: 10706132--10706238 Score: 63
Period size: 22 Copynumber: 4.9 Consensus size: 22
10706122 CAACATTGGT
* * *
10706132 AAATCATTCATAATTTAA-AGAT
1 AAATCATTGATAAATTAATAG-C
* * *
10706154 AAATCTTTCATAAATTAGTAGC
1 AAATCATTGATAAATTAATAGC
* *
10706176 AAATCATTTATAAATTAATAGT
1 AAATCATTGATAAATTAATAGC
* * * **
10706198 ACATCATTGATAACTTAGTAAT
1 AAATCATTGATAAATTAATAGC
* *
10706220 AAATAATTGATAACTTAAT
1 AAATCATTGATAAATTAAT
10706239 TATCAATTAT
Statistics
Matches: 68, Mismatches: 16, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
22 66 0.97
23 2 0.03
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.37
Consensus pattern (22 bp):
AAATCATTGATAAATTAATAGC
Found at i:10706216 original size:44 final size:44
Alignment explanation
Indices: 10706132--10706217 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
10706122 CAACATTGGT
* *
10706132 AAATCATTCATAATTTAAAGATAAATCTTTCATAAATTAGTAGC
1 AAATCATTCATAAATTAAAGATAAATCATTCATAAATTAGTAGC
* * * *
10706176 AAATCATTTATAAATTAATAG-TACATCATTGATAACTTAGTA
1 AAATCATTCATAAATTAA-AGATAAATCATTCATAAATTAGTA
10706218 ATAAATAATT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 33 0.94
45 2 0.06
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.37
Consensus pattern (44 bp):
AAATCATTCATAAATTAAAGATAAATCATTCATAAATTAGTAGC
Found at i:10706590 original size:21 final size:21
Alignment explanation
Indices: 10706532--10706673 Score: 113
Period size: 21 Copynumber: 6.7 Consensus size: 21
10706522 ATAAGTTATC
* * *
10706532 AAAAGATTACTAAATTTATAT
1 AAAAAATTATTAAAATTATAT
** * *
10706553 AAAGAGGTTACTAAAATTTTAT
1 AAA-AAATTATTAAAATTATAT
10706575 AAAAAATTATTAAAATTATAT
1 AAAAAATTATTAAAATTATAT
* * * *
10706596 CAATAGTTATCAAAATTATAT
1 AAAAAATTATTAAAATTATAT
* * *
10706617 TATAAATTATCAAAATTATAT
1 AAAAAATTATTAAAATTATAT
* * *
10706638 CAAAAGTTATTAAAATTTTAT
1 AAAAAATTATTAAAATTATAT
10706659 AAAAAATTATCTAAA
1 AAAAAATTAT-TAAA
10706674 TCAAAATTAT
Statistics
Matches: 97, Mismatches: 22, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
21 75 0.77
22 22 0.23
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.38
Consensus pattern (21 bp):
AAAAAATTATTAAAATTATAT
Found at i:10706612 original size:42 final size:42
Alignment explanation
Indices: 10706565--10706704 Score: 165
Period size: 42 Copynumber: 3.2 Consensus size: 42
10706555 AGAGGTTACT
*
10706565 AAAATTTTATAAAAAATTATTAAAATTATATCAATAGTTATC
1 AAAATTTTATAAAAAATTATTAAAATTATATCAAAAGTTATC
* * * * *
10706607 AAAATTATATTATAAATTATCAAAATTATATCAAAAGTTATT
1 AAAATTTTATAAAAAATTATTAAAATTATATCAAAAGTTATC
10706649 AAAATTTTATAAAAAATTATCTAAATCAAAATTATATCAAAAGTTATC
1 AAAATTTTATAAAAAATTA--T---T-AAAATTATATCAAAAGTTATC
10706697 -AAATTTTA
1 AAAATTTTA
10706705 CTAATATTAT
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
42 52 0.64
44 1 0.01
47 8 0.10
48 20 0.25
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (42 bp):
AAAATTTTATAAAAAATTATTAAAATTATATCAAAAGTTATC
Found at i:10706679 original size:27 final size:26
Alignment explanation
Indices: 10706649--10706700 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
10706639 AAAAGTTATT
*
10706649 AAAATTTTATAAAAAATTATCTAAATC
1 AAAATTATATAAAAAATTATC-AAATC
* *
10706676 AAAATTATATCAAAAGTTATCAAAT
1 AAAATTATATAAAAAATTATCAAAT
10706701 TTTACTAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.35
Consensus pattern (26 bp):
AAAATTATATAAAAAATTATCAAATC
Found at i:10706698 original size:10 final size:10
Alignment explanation
Indices: 10706565--10706704 Score: 65
Period size: 10 Copynumber: 13.8 Consensus size: 10
10706555 AGAGGTTACT
*
10706565 AAAATTTTATA
1 AAAA-TTTATC
* *
10706576 AAAAATTATT
1 AAAATTTATC
10706586 AAAATTATATC
1 AAAATT-TATC
* *
10706597 AATAGTTATC
1 AAAATTTATC
*
10706607 AAAATTATATT
1 AAAATT-TATC
10706618 ATAAA-TTATC
1 A-AAATTTATC
10706628 AAAATTATATC
1 AAAATT-TATC
* *
10706639 AAAAGTTATT
1 AAAATTTATC
*
10706649 AAAATTTTATA
1 AAAA-TTTATC
*
10706660 AAAAATTATC
1 AAAATTTATC
*
10706670 -TAA---ATC
1 AAAATTTATC
10706676 AAAATTATATC
1 AAAATT-TATC
*
10706687 AAAAGTTATC
1 AAAATTTATC
*
10706697 AAATTTTA
1 AAAATTTA
10706705 CTAATATTAT
Statistics
Matches: 97, Mismatches: 21, Indels: 23
0.69 0.15 0.16
Matches are distributed among these distances:
6 3 0.03
7 2 0.02
9 5 0.05
10 43 0.44
11 41 0.42
12 3 0.03
ACGTcount: A:0.53, C:0.06, G:0.02, T:0.39
Consensus pattern (10 bp):
AAAATTTATC
Found at i:10706845 original size:2 final size:2
Alignment explanation
Indices: 10706838--10706877 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
10706828 AAAACTAGTG
10706838 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10706878 CATACACACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10708134 original size:23 final size:23
Alignment explanation
Indices: 10708108--10708155 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
10708098 AAAACTATTC
*
10708108 ATTTTGAATAAACTTATTTATCT
1 ATTTTGAATAAACTTAATTATCT
* *
10708131 ATTTTGAATAGATTTAATTATCT
1 ATTTTGAATAAACTTAATTATCT
10708154 AT
1 AT
10708156 CTTTATTATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (23 bp):
ATTTTGAATAAACTTAATTATCT
Found at i:10713128 original size:25 final size:25
Alignment explanation
Indices: 10713100--10713154 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
10713090 GATTCTGCAA
10713100 CATTGGCCACATATATGATTGGTTT
1 CATTGGCCACATATATGATTGGTTT
10713125 CATTGGCCACATATATGATTGGTTT
1 CATTGGCCACATATATGATTGGTTT
10713150 CATTG
1 CATTG
10713155 TCAACAAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.24, C:0.16, G:0.20, T:0.40
Consensus pattern (25 bp):
CATTGGCCACATATATGATTGGTTT
Found at i:10725841 original size:2 final size:2
Alignment explanation
Indices: 10725834--10725863 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10725824 ATCAAGTGGA
10725834 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10725864 CAAGAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10726527 original size:2 final size:2
Alignment explanation
Indices: 10726520--10726547 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
10726510 TAAGCTTACA
10726520 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10726548 GTATTACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:10727023 original size:3 final size:3
Alignment explanation
Indices: 10727017--10727056 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
10727007 GCAGCAGCAG
* *
10727017 CAA CAA CAA CAA CAA CAA CAA C-A CAC CAA CAA CAT CAA CA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CA
10727057 TTTCTCTAGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.60, C:0.38, G:0.00, T:0.03
Consensus pattern (3 bp):
CAA
Found at i:10732028 original size:26 final size:27
Alignment explanation
Indices: 10731991--10732041 Score: 63
Period size: 27 Copynumber: 1.9 Consensus size: 27
10731981 AAATTTAGTT
10731991 TTTATATTTTAA-TTTGAT-AATTTTAG
1 TTTATATTTTAACTTTG-TCAATTTTAG
10732017 TTTA-ATTATTAACTTTGTCAATTTT
1 TTTATATT-TTAACTTTGTCAATTTT
10732042 TTGTCATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
25 3 0.14
26 9 0.41
27 10 0.45
ACGTcount: A:0.29, C:0.04, G:0.06, T:0.61
Consensus pattern (27 bp):
TTTATATTTTAACTTTGTCAATTTTAG
Found at i:10732299 original size:18 final size:19
Alignment explanation
Indices: 10732262--10732299 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
10732252 ATAAAAAATA
* *
10732262 TTTTAAATATTTTTAGTTT
1 TTTTAAATATTTTAAATTT
10732281 TTTTAAA-ATTTTAAATTT
1 TTTTAAATATTTTAAATTT
10732299 T
1 T
10732300 AAAAGTATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.66
Consensus pattern (19 bp):
TTTTAAATATTTTAAATTT
Found at i:10732397 original size:20 final size:19
Alignment explanation
Indices: 10732356--10732437 Score: 56
Period size: 20 Copynumber: 3.9 Consensus size: 19
10732346 ATTAGTTTTT
* *
10732356 ATAATATATAATAATTATTA
1 ATAATATATATTAA-TAATA
10732376 ATAATATCATATTAATAATA
1 ATAATAT-ATATTAATAATA
* * *
10732396 ATACTATTATCATTTATATTA
1 ATAATA-TAT-ATTAATAATA
10732417 ATCAATTATAATATTAATAAT
1 AT-AA-TAT-ATATTAATAAT
10732438 GTAAATTAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
20 18 0.38
21 17 0.35
22 9 0.19
23 4 0.08
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (19 bp):
ATAATATATATTAATAATA
Found at i:10732709 original size:22 final size:22
Alignment explanation
Indices: 10732684--10732729 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
10732674 GTATTATATA
*
10732684 TTAAAAAATTTATCA-TAGATTT
1 TTAAAAAATTGAT-ATTAGATTT
*
10732706 TTAATAAATTGATATTAGATTT
1 TTAAAAAATTGATATTAGATTT
10732728 TT
1 TT
10732730 TTCATATGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.41, C:0.02, G:0.07, T:0.50
Consensus pattern (22 bp):
TTAAAAAATTGATATTAGATTT
Found at i:10733017 original size:18 final size:17
Alignment explanation
Indices: 10732972--10733021 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 17
10732962 GGTCATTTTT
*
10732972 AAAATTTAATATTTTAA
1 AAAATTTAAAATTTTAA
* *
10732989 AAAACTAAAAATTTTAAA
1 AAAATTTAAAATTTT-AA
10733007 AAAATTTAAAATTTT
1 AAAATTTAAAATTTT
10733022 TTTGTACTAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
17 12 0.44
18 15 0.56
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (17 bp):
AAAATTTAAAATTTTAA
Found at i:10738217 original size:33 final size:35
Alignment explanation
Indices: 10738173--10738239 Score: 93
Period size: 33 Copynumber: 1.9 Consensus size: 35
10738163 AATAGCCTAC
* *
10738173 CCCATTTGACTACAT-T-TTATGATCAATATGGCA
1 CCCATTCGACTACATATGTCATGATCAATATGGCA
10738206 CCCATTCGACTACATCATGTCATGATCAATATGG
1 CCCATTCGACTACAT-ATGTCATGATCAATATGG
10738240 AACCTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 14 0.48
35 1 0.03
36 14 0.48
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (35 bp):
CCCATTCGACTACATATGTCATGATCAATATGGCA
Found at i:10738343 original size:5 final size:5
Alignment explanation
Indices: 10738333--10738364 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
10738323 CAACCCATCT
10738333 AAAA- AAAA- AAAAC AAAAC AAAAC AAAAC AAAA
1 AAAAC AAAAC AAAAC AAAAC AAAAC AAAAC AAAA
10738365 ATAAATCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 8 0.30
5 19 0.70
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (5 bp):
AAAAC
Found at i:10744002 original size:10 final size:10
Alignment explanation
Indices: 10743987--10744059 Score: 59
Period size: 10 Copynumber: 7.7 Consensus size: 10
10743977 TATATCATGT
10743987 AAAAAAATAG
1 AAAAAAATAG
*
10743997 AAAAAATTAG
1 AAAAAAATAG
10744007 AAAAAAAT--
1 AAAAAAATAG
*
10744015 -AAAAAACA-
1 AAAAAAATAG
*
10744023 CAAAAAATAG
1 AAAAAAATAG
10744033 AAAAATAA-AG
1 AAAAA-AATAG
10744043 AAAAATAA-AG
1 AAAAA-AATAG
10744053 AAAAAAA
1 AAAAAAA
10744060 CCAAAAAAGA
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
7 6 0.11
9 9 0.17
10 37 0.69
11 2 0.04
ACGTcount: A:0.81, C:0.03, G:0.07, T:0.10
Consensus pattern (10 bp):
AAAAAAATAG
Found at i:10744027 original size:16 final size:16
Alignment explanation
Indices: 10744007--10744051 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
10743997 AAAAAATTAG
10744007 AAAAAAATAAAAAACA
1 AAAAAAATAAAAAACA
* *
10744023 CAAAAAATAGAAAAATA
1 AAAAAAATA-AAAAACA
10744040 AAGAAAAATAAA
1 AA-AAAAATAAA
10744052 GAAAAAAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 8 0.33
17 9 0.38
18 7 0.29
ACGTcount: A:0.82, C:0.04, G:0.04, T:0.09
Consensus pattern (16 bp):
AAAAAAATAAAAAACA
Found at i:10744046 original size:18 final size:17
Alignment explanation
Indices: 10743987--10744049 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 17
10743977 TATATCATGT
10743987 AAAAAAATAGAAAAAATTA
1 AAAAAAATAG-AAAAA-TA
*
10744006 GAAAAAAATA-AAAAACA
1 -AAAAAAATAGAAAAATA
*
10744023 CAAAAAATAGAAAAATA
1 AAAAAAATAGAAAAATA
10744040 AAGAAAAATA
1 AA-AAAAATA
10744050 AAGAAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
16 8 0.22
17 8 0.22
18 12 0.32
20 9 0.24
ACGTcount: A:0.79, C:0.03, G:0.06, T:0.11
Consensus pattern (17 bp):
AAAAAAATAGAAAAATA
Found at i:10745827 original size:14 final size:14
Alignment explanation
Indices: 10745810--10745851 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
10745800 AAAAAGAAGC
10745810 AAAAAGAAGAAAAA
1 AAAAAGAAGAAAAA
10745824 AAAAAGAGAGAAATAA
1 AAAAAGA-AGAAA-AA
*
10745840 GAAAA-AAGAAAA
1 AAAAAGAAGAAAA
10745852 TAGTTTGACA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 1 0.04
14 12 0.48
15 6 0.24
16 6 0.24
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (14 bp):
AAAAAGAAGAAAAA
Found at i:10745841 original size:22 final size:24
Alignment explanation
Indices: 10745795--10745851 Score: 73
Period size: 22 Copynumber: 2.4 Consensus size: 24
10745785 AGTTCAAAAC
10745795 AAAAAAAAAAGAAGCAAAAAGAAG
1 AAAAAAAAAAGAAGCAAAAAGAAG
* *
10745819 AAAAAAAAAAG-AG-AGAAATAAG
1 AAAAAAAAAAGAAGCAAAAAGAAG
10745841 AAAAAAGAAAA
1 AAAAAA-AAAA
10745852 TAGTTTGACA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
22 13 0.43
23 6 0.20
24 11 0.37
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.02
Consensus pattern (24 bp):
AAAAAAAAAAGAAGCAAAAAGAAG
Found at i:10745841 original size:25 final size:23
Alignment explanation
Indices: 10745795--10745851 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
10745785 AGTTCAAAAC
10745795 AAAAAAAAAAGAAGCAAAAAGAA
1 AAAAAAAAAAGAAGCAAAAAGAA
10745818 GAAAAAAAAAAGAGAG-AAATAAGAA
1 -AAAAAAAAAAGA-AGCAAA-AAGAA
*
10745843 AAAAGAAAA
1 AAAAAAAAA
10745852 TAGTTTGACA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 23 0.77
25 7 0.23
ACGTcount: A:0.81, C:0.02, G:0.16, T:0.02
Consensus pattern (23 bp):
AAAAAAAAAAGAAGCAAAAAGAA
Found at i:10749155 original size:3 final size:3
Alignment explanation
Indices: 10749147--10749176 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
10749137 ATTTATTTAC
10749147 TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
10749177 TATTTTCTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:10749179 original size:9 final size:9
Alignment explanation
Indices: 10749116--10749187 Score: 53
Period size: 9 Copynumber: 7.9 Consensus size: 9
10749106 ACATTTTCAA
10749116 TTTATTTAT
1 TTTATTTAT
*
10749125 GTTTATTT-G
1 -TTTATTTAT
10749134 TTTATTTA-
1 TTTATTTAT
10749142 TTTACTATTAT
1 TTTA-T-TTAT
10749153 TATTA-TTAT
1 T-TTATTTAT
10749162 TATTA-TTAT
1 T-TTATTTAT
10749171 TTTATTTAT
1 TTTATTTAT
*
10749180 TTTCTTTA
1 TTTATTTA
10749188 CACATATTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
8 14 0.26
9 26 0.48
10 10 0.19
11 1 0.02
12 3 0.06
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (9 bp):
TTTATTTAT
Found at i:10749315 original size:18 final size:20
Alignment explanation
Indices: 10749293--10749337 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
10749283 TTTTAAATTA
10749293 AAAAAAAGTAATAAAAA-A-T
1 AAAAAAA-TAATAAAAATAGT
*
10749312 AAAAAAATGATAAAAATAGT
1 AAAAAAATAATAAAAATAGT
10749332 AAAAAA
1 AAAAAA
10749338 TAGAAAATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 8 0.35
19 8 0.35
20 7 0.30
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.16
Consensus pattern (20 bp):
AAAAAAATAATAAAAATAGT
Found at i:10751600 original size:12 final size:13
Alignment explanation
Indices: 10751568--10751601 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
10751558 ATTAATAAAA
*
10751568 TAATATATATTTT
1 TAATAAATATTTT
10751581 TAATAAATATTTT
1 TAATAAATATTTT
10751594 TAA-AAATA
1 TAATAAATA
10751602 AAAAATTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TAATAAATATTTT
Found at i:10751864 original size:16 final size:16
Alignment explanation
Indices: 10751843--10751873 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10751833 ATAATATAAT
*
10751843 ATAAATAAATCATGAA
1 ATAAATAAAACATGAA
10751859 ATAAATAAAACATGA
1 ATAAATAAAACATGA
10751874 GATGAAGTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.23
Consensus pattern (16 bp):
ATAAATAAAACATGAA
Found at i:10752838 original size:19 final size:18
Alignment explanation
Indices: 10752814--10752852 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
10752804 GATATATATA
* *
10752814 AATTTTTTATTATTTATTT
1 AATTTTATATT-TATATTT
10752833 AATTTTATATTTATATTT
1 AATTTTATATTTATATTT
10752851 AA
1 AA
10752853 AAATATTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
AATTTTATATTTATATTT
Found at i:10752865 original size:20 final size:20
Alignment explanation
Indices: 10752837--10752883 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
10752827 TTATTTAATT
10752837 TTATATTTATATTTAAAAATA
1 TTATATTTATA-TTAAAAATA
10752858 TTAT-TTTATATTAAAAATA
1 TTATATTTATATTAAAAATA
*
10752877 TTTTATT
1 TTATATT
10752884 AATTTTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 12 0.50
20 8 0.33
21 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
TTATATTTATATTAAAAATA
Found at i:10752891 original size:20 final size:19
Alignment explanation
Indices: 10752837--10752892 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 19
10752827 TTATTTAATT
10752837 TTATATTTATATTTAAAAATA
1 TTAT-TTTAT-TTTAAAAATA
*
10752858 TTATTTTATATTAAAAATA
1 TTATTTTATTTTAAAAATA
10752877 TT-TTATTAATTTTAAA
1 TTATT-TT-ATTTTAAA
10752893 TCAAATAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 2 0.06
19 13 0.42
20 12 0.39
21 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTATTTTATTTTAAAAATA
Found at i:10759173 original size:15 final size:15
Alignment explanation
Indices: 10759148--10759185 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
10759138 AAAAGATAAA
*
10759148 AAATATATATATATTT
1 AAAT-TATATATATCT
10759164 AAATTATATATATCT
1 AAATTATATATATCT
10759179 AAATTAT
1 AAATTAT
10759186 TAGAAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 17 0.81
16 4 0.19
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
AAATTATATATATCT
Found at i:10759215 original size:132 final size:128
Alignment explanation
Indices: 10759079--10759345 Score: 283
Period size: 129 Copynumber: 2.0 Consensus size: 128
10759069 GATAAAACTA
* * *
10759079 AATTTTATA-TTTTCAAATTTAAAAAGATAGATATC-T-AAATTATTAAAAAGATTAATTGTAAA
1 AATTTTATACTTTT--AATTT-AAAAGATAAATACCATAAAAATATTAAAAA-ATTAATT-TAAA
* * *
10759141 AGATAAAAAATATATATATATTTAAATTATATATATCTAAATTATT-AGAAAATTAATTTTGAAT
61 AGAT-AAAAAGATATATATA-GTAAATTATATAT-T-TAAATTATTAAAAAAATTAATTTTGAAT
10759205 -ACTAAT
122 AACTAAT
* *** ** *
10759211 AATTTGTATACTTTTTATTTATTTGATAAATACCATAAAAATATTAGTAAATTAATTTAGAAGAT
1 AATTT-TATACTTTTAATTTAAAAGATAAATACCATAAAAATATTAAAAAATTAATTTAAAAGAT
*
10759276 AAAAAGATATATATAGTAAATTATATATTTAAATTATTAAAAAAATTAATTTTGGATAACTAAT
65 AAAAAGATATATATAGTAAATTATATATTTAAATTATTAAAAAAATTAATTTTGAATAACTAAT
10759340 AATTTT
1 AATTTT
10759346 TAAATATTTT
Statistics
Matches: 115, Mismatches: 14, Indels: 16
0.79 0.10 0.11
Matches are distributed among these distances:
127 9 0.08
128 18 0.16
129 23 0.20
130 14 0.12
131 16 0.14
132 17 0.15
133 14 0.12
134 4 0.03
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.42
Consensus pattern (128 bp):
AATTTTATACTTTTAATTTAAAAGATAAATACCATAAAAATATTAAAAAATTAATTTAAAAGATA
AAAAGATATATATAGTAAATTATATATTTAAATTATTAAAAAAATTAATTTTGAATAACTAAT
Found at i:10759356 original size:129 final size:132
Alignment explanation
Indices: 10759129--10759366 Score: 344
Period size: 129 Copynumber: 1.8 Consensus size: 132
10759119 TATTAAAAAG
* * *
10759129 ATTAATTGTAAAAGATAAAAAATATATATATATTTAAATTATATATATCTAAATTATTAGAAAAT
1 ATTAATTGTAAAAGATAAAAAAGATATATATATGTAAATTATATATATCTAAATTATTAAAAAAT
*
10759194 TAATTTTGAATACTAATAATTTGTATACTTTTTATTTATTTGATAAATACCATAAAAATATTAGT
66 TAATTTTGAATACTAATAATTTGTATAATTTTTATTTATTTGATAAATACCATAAAAATATTAGT
10759259 AA
131 AA
*
10759261 ATTAATT-TAGAAGAT-AAAAAGATATATATA-GTAAATTATATAT-T-TAAATTATTAAAAAAA
1 ATTAATTGTAAAAGATAAAAAAGATATATATATGTAAATTATATATATCTAAATTATT-AAAAAA
* *
10759321 TTAATTTTGGATAACTAATAATTTTTA-AATATTTTATTTATTTGAT
65 TTAATTTTGAAT-ACTAATAATTTGTATAAT-TTTTATTTATTTGAT
10759367 TAATTTTTCA
Statistics
Matches: 96, Mismatches: 7, Indels: 9
0.86 0.06 0.08
Matches are distributed among these distances:
127 9 0.09
128 19 0.20
129 40 0.42
130 14 0.15
131 7 0.07
132 7 0.07
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (132 bp):
ATTAATTGTAAAAGATAAAAAAGATATATATATGTAAATTATATATATCTAAATTATTAAAAAAT
TAATTTTGAATACTAATAATTTGTATAATTTTTATTTATTTGATAAATACCATAAAAATATTAGT
AA
Found at i:10759431 original size:102 final size:107
Alignment explanation
Indices: 10759271--10759469 Score: 327
Period size: 102 Copynumber: 1.9 Consensus size: 107
10759261 ATTAATTTAG
*
10759271 AAGATAAAAAGATATATATAGTAAATTATATATTTAAATTATTAAAAAAATTAATTTTGGATAAC
1 AAGATAAAAAGATATATATAGTAAATTATATATGTAAATTATTAAAAAAATTAATTTTGGATAAC
*
10759336 TAATAATTTTTAAATA-TTTTATTTATTTGATTAATTTTTCA
66 TAATAATATTTAAATACTTTTATTTATTTGATTAATTTTTCA
*
10759377 AAGATAAAAAGATATATAT-TTAAA-T-TATATGTAAATTATT-AAAAAATTAATTTTGGATAAC
1 AAGATAAAAAGATATATATAGTAAATTATATATGTAAATTATTAAAAAAATTAATTTTGGATAAC
*
10759438 TAATCATATTTAAATACTTTTATTTATTTGAT
66 TAATAATATTTAAATACTTTTATTTATTTGAT
10759470 AAATACAATA
Statistics
Matches: 88, Mismatches: 4, Indels: 5
0.91 0.04 0.05
Matches are distributed among these distances:
102 35 0.40
103 29 0.33
104 1 0.01
105 4 0.05
106 19 0.22
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.45
Consensus pattern (107 bp):
AAGATAAAAAGATATATATAGTAAATTATATATGTAAATTATTAAAAAAATTAATTTTGGATAAC
TAATAATATTTAAATACTTTTATTTATTTGATTAATTTTTCA
Found at i:10759497 original size:232 final size:228
Alignment explanation
Indices: 10759154--10759593 Score: 588
Period size: 230 Copynumber: 1.9 Consensus size: 228
10759144 TAAAAAATAT
* **
10759154 ATATATATTTAAATTATATATATCTAAATTATTAGAAAATTAATTTTGAATACTAATAATTTGTA
1 ATATATATTTAAA-TATATATATCTAAATTATTAAAAAATTAATTTTGAATACTAATAATTTAAA
* * *
10759219 TACTTTTTATTTATTTGATAAATACCATAAAAATATTAGTAAATTAA-TTTA-G-AAGATAAAAA
65 TACTTTTTATTTATTTGATAAATACAATAAAAATATGAGAAAATTAATTTTATGCAA-A-AAAAA
* *
10759281 GATATATATAGTAAATTATATATTTAAATTATTAAAAAAATTAATTTTGGATAACTAATAATTTT
128 GATATATAT--TAAATT-TATATGTAAATTATT--AAAAATTAATTTTGAATAACTAA-AATTTT
*
10759346 TAAATATTTTATTTATTTGATTAATTTTTCAAAGATAAAAAG
187 TAAATATTTTATTTAGTTGATTAATTTTTCAAAGATAAAAAG
* *
10759388 ATATATATTT-AA-AT-TATATGTAAATTATTAAAAAATTAATTTTGGATAACTAATCATATTTA
1 ATATATATTTAAATATATATATCTAAATTATTAAAAAATTAATTTTGAAT-ACTAAT-A-ATTTA
* *
10759450 AATAC-TTTTATTTATTTGATAAATACAATAAAATTATGAGAAAATTAATTTTATGCCAAAAAAA
63 AATACTTTTTATTTATTTGATAAATACAATAAAAATATGAGAAAATTAATTTTATGCAAAAAAAA
* *
10759514 GATATATATTAGATTTATATGTAAATTATTAGAAATTAATTTTGAATAACTAAAATTTTTAAATA
128 GATATATATTAAATTTATATGTAAATTATTAAAAATTAATTTTGAATAACTAAAATTTTTAAATA
10759579 TTTTATTTAGTTGAT
193 TTTTATTTAGTTGAT
10759594 GAATACCATA
Statistics
Matches: 185, Mismatches: 15, Indels: 19
0.84 0.07 0.09
Matches are distributed among these distances:
227 26 0.14
228 21 0.11
230 44 0.24
231 13 0.07
232 40 0.22
233 28 0.15
234 12 0.06
235 1 0.01
ACGTcount: A:0.46, C:0.03, G:0.06, T:0.44
Consensus pattern (228 bp):
ATATATATTTAAATATATATATCTAAATTATTAAAAAATTAATTTTGAATACTAATAATTTAAAT
ACTTTTTATTTATTTGATAAATACAATAAAAATATGAGAAAATTAATTTTATGCAAAAAAAAGAT
ATATATTAAATTTATATGTAAATTATTAAAAATTAATTTTGAATAACTAAAATTTTTAAATATTT
TATTTAGTTGATTAATTTTTCAAAGATAAAAAG
Found at i:10759521 original size:127 final size:124
Alignment explanation
Indices: 10759382--10759609 Score: 332
Period size: 127 Copynumber: 1.8 Consensus size: 124
10759372 TTTCAAAGAT
* *
10759382 AAAAAGATATATATTTA-AATTATATGTAAATTATTAAAAAATTAATTTTGGATAACTAATCATA
1 AAAAAGATATATA-TTAGAATTATATGTAAATTATT-AAAAATTAATTTTGAATAACTAA-AATA
*
10759446 TTTAAATACTTTTATTTATTTGATAAATACAATAAAATTATGAGAAAATTAATTTTATGCCAA
63 TTTAAATA-TTTTATTTAGTTGATAAATACAATAAAATTATGAGAAAATTAATTTTATGCCAA
* * *
10759509 AAAAAGATATATATTAGATTTATATGTAAATTATTAGAAATTAATTTTGAATAACTAAAATTTTT
1 AAAAAGATATATATTAGAATTATATGTAAATTATTAAAAATTAATTTTGAATAACTAAAATATTT
* * *
10759574 AAATATTTTATTTAGTTGATGAATACCATAATATTA
66 AAATATTTTATTTAGTTGATAAATACAATAAAATTA
10759610 GAAATTGTCT
Statistics
Matches: 91, Mismatches: 9, Indels: 5
0.87 0.09 0.05
Matches are distributed among these distances:
124 27 0.30
125 10 0.11
126 24 0.26
127 30 0.33
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (124 bp):
AAAAAGATATATATTAGAATTATATGTAAATTATTAAAAATTAATTTTGAATAACTAAAATATTT
AAATATTTTATTTAGTTGATAAATACAATAAAATTATGAGAAAATTAATTTTATGCCAA
Found at i:10762301 original size:16 final size:16
Alignment explanation
Indices: 10762280--10762311 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10762270 GAAAAAATTC
10762280 ATTATAATATTTTTTA
1 ATTATAATATTTTTTA
10762296 ATTATAATATTTTTTA
1 ATTATAATATTTTTTA
10762312 TAAAGTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTATAATATTTTTTA
Found at i:10762667 original size:15 final size:14
Alignment explanation
Indices: 10762645--10762674 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
10762635 TAAAAATAAA
10762645 TTTTTTAACTTTTT
1 TTTTTTAACTTTTT
10762659 TTTTCTTAACTTTTT
1 TTTT-TTAACTTTTT
10762674 T
1 T
10762675 CTCAAATTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.13, C:0.10, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTTTAACTTTTT
Found at i:10762815 original size:21 final size:22
Alignment explanation
Indices: 10762779--10762825 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
10762769 TCTAAATAAA
*
10762779 TTTTTTTTTTTGTTTCTATTAC
1 TTTTTTTTTATGTTTCTATTAC
* *
10762801 TTTTTTTTTAT-TTTCTTTTTC
1 TTTTTTTTTATGTTTCTATTAC
10762822 TTTT
1 TTTT
10762826 CTTATCCTCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.06, C:0.09, G:0.02, T:0.83
Consensus pattern (22 bp):
TTTTTTTTTATGTTTCTATTAC
Found at i:10770155 original size:17 final size:15
Alignment explanation
Indices: 10770127--10770169 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 15
10770117 TACTTTGCTT
*
10770127 AAAAAAAAAAAAGAG
1 AAAAAAAAAAAAAAG
10770142 AAAGAAAGAAAAAAAAG
1 AAA-AAA-AAAAAAAAG
10770159 AAAAAAAAAAA
1 AAAAAAAAAAA
10770170 GGGGATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 8 0.32
16 6 0.24
17 11 0.44
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAAG
Found at i:10770160 original size:13 final size:12
Alignment explanation
Indices: 10770127--10770170 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
10770117 TACTTTGCTT
10770127 AAAAAAA-AAAA
1 AAAAAAAGAAAA
* *
10770138 AGAGAAAGAAAGA
1 AAAAAAAGAAA-A
10770151 AAAAAAAGAAAA
1 AAAAAAAGAAAA
10770163 AAAAAAAG
1 AAAAAAAG
10770171 GGGATATATC
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 5 0.19
12 12 0.44
13 10 0.37
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (12 bp):
AAAAAAAGAAAA
Found at i:10770740 original size:20 final size:19
Alignment explanation
Indices: 10770715--10770752 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
10770705 TTGATCTTTT
*
10770715 ATTTTTTTCCTTTTTTAAAC
1 ATTTTTTT-ATTTTTTAAAC
10770735 ATTTTTTTATTTTTTAAA
1 ATTTTTTTATTTTTTAAA
10770753 TAATTGATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTTTATTTTTTAAAC
Found at i:10772086 original size:43 final size:43
Alignment explanation
Indices: 10771971--10772099 Score: 159
Period size: 46 Copynumber: 2.9 Consensus size: 43
10771961 AATTAAGTAT
*
10771971 CTTTCATAAAAAAAATCAATTGAAATAAACACATGTTATCATAA
1 CTTTCAT-AAAAAAATCAATTAAAATAAACACATGTTATCATAA
* * ** *
10772015 CTTTCGTAAAAAAAAAATCATTTAAAATAAACATTTGTTATCGTAA
1 CTTTC---ATAAAAAAATCAATTAAAATAAACACATGTTATCATAA
*
10772061 CTTTCATAAAAAAATCAATTAAAATAAACACATATTATC
1 CTTTCATAAAAAAATCAATTAAAATAAACACATGTTATC
10772100 CCTATTTTTT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
43 29 0.41
44 5 0.07
46 36 0.51
47 1 0.01
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (43 bp):
CTTTCATAAAAAAATCAATTAAAATAAACACATGTTATCATAA
Found at i:10772414 original size:16 final size:16
Alignment explanation
Indices: 10772373--10772413 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
10772363 TAGCTATTAA
10772373 AATATTAAAATTATTT
1 AATATTAAAATTATTT
*
10772389 ATTATTAAAATTA-TT
1 AATATTAAAATTATTT
10772404 AATATTAAAA
1 AATATTAAAA
10772414 AATAATTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 11 0.48
16 12 0.52
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
AATATTAAAATTATTT
Found at i:10772538 original size:22 final size:23
Alignment explanation
Indices: 10772503--10772625 Score: 94
Period size: 23 Copynumber: 5.3 Consensus size: 23
10772493 TTCTTTATAT
10772503 TATTTATTAATATATTATAATAA
1 TATTTATTAATATATTATAATAA
*
10772526 TATTTA-TAATATATTATATTAA
1 TATTTATTAATATATTATAATAA
** * *
10772548 TAGTAAATT-ATTTATTTATAAT-T
1 TA-TTTATTAATATA-TTATAATAA
* *
10772571 TATTTATTAATATAATATTATTAA
1 TATTTATTAATATATTA-TAATAA
*
10772595 T-TAATATTAATATATTAGT-ATAA
1 TAT-TTATTAATATATTA-TAATAA
10772618 TATTTATT
1 TATTTATT
10772626 TATAATAATA
Statistics
Matches: 75, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
22 23 0.31
23 30 0.40
24 22 0.29
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
TATTTATTAATATATTATAATAA
Found at i:10772599 original size:51 final size:47
Alignment explanation
Indices: 10772530--10772651 Score: 122
Period size: 51 Copynumber: 2.4 Consensus size: 47
10772520 TAATAATATT
*
10772530 TATAATA-TATTATATTAATAGTAAAT-TATTTATTTATAATTTATTTATTAA
1 TATAATATTATTA-ATTAATA-TAAATATA-TTA-GTATAA--TATTTATTAA
* *
10772581 TATAATATTATTAATTAATATTAATATATTAGTATAATATTTATTTA
1 TATAATATTATTAATTAATATAAATATATTAGTATAATATTTATTAA
10772628 TAATAATATTTATTAATATAATAT
1 T-ATAATA-TTATTAAT-TAATAT
10772652 TTTTAAGTAC
Statistics
Matches: 63, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
47 10 0.16
48 6 0.10
49 13 0.21
50 13 0.21
51 16 0.25
52 5 0.08
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (47 bp):
TATAATATTATTAATTAATATAAATATATTAGTATAATATTTATTAA
Found at i:10772611 original size:21 final size:18
Alignment explanation
Indices: 10772499--10772611 Score: 80
Period size: 18 Copynumber: 6.5 Consensus size: 18
10772489 ATTATTCTTT
*
10772499 ATATTATTTATTAATATA
1 ATATTATTAATTAATATA
* * *
10772517 TTA-TAATAA-TATTTATA
1 ATATTATTAATTA-ATATA
10772534 ATA-TATTATATTAATAGTA
1 ATATTATTA-ATTAATA-TA
*
10772553 A-ATTATTTATT--TATA
1 ATATTATTAATTAATATA
*
10772568 AT-TTATTTATTAATATA
1 ATATTATTAATTAATATA
10772585 ATATTATTAATTAATATTA
1 ATATTATTAATTAATA-TA
10772604 ATA-TATTA
1 ATATTATTA
10772612 GTATAATATT
Statistics
Matches: 76, Mismatches: 9, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
15 12 0.16
16 4 0.05
17 20 0.26
18 26 0.34
19 14 0.18
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (18 bp):
ATATTATTAATTAATATA
Found at i:10772788 original size:23 final size:22
Alignment explanation
Indices: 10772761--10772814 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 22
10772751 TTTTTAAAAA
10772761 AATAATTTCA-TTTTCTATTGATC
1 AATAATTT-ATTTTTC-ATTGATC
*
10772784 AATAAATTATTTTTCATTGATC
1 AATAATTTATTTTTCATTGATC
10772806 AATTAATTT
1 AA-TAATTT
10772815 GTACCAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (22 bp):
AATAATTTATTTTTCATTGATC
Found at i:10772796 original size:22 final size:23
Alignment explanation
Indices: 10772761--10772813 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
10772751 TTTTTAAAAA
*
10772761 AATAATTTCA-TTTTCTATTGATC
1 AATAAATTCATTTTTC-ATTGATC
10772784 AATAAATT-ATTTTTCATTGATC
1 AATAAATTCATTTTTCATTGATC
*
10772806 AATTAATT
1 AATAAATT
10772814 TGTACCAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (23 bp):
AATAAATTCATTTTTCATTGATC
Found at i:10773887 original size:2 final size:2
Alignment explanation
Indices: 10773880--10773914 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
10773870 AGAATTTCAA
10773880 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
10773915 CTGTGGAAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10775730 original size:22 final size:23
Alignment explanation
Indices: 10775704--10775750 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
10775694 GAAAAACTGG
10775704 TTGATCAATAAAAAATAAT-TTT
1 TTGATCAATAAAAAATAATGTTT
*
10775726 TTGATCAATGAAAAATAATGTTT
1 TTGATCAATAAAAAATAATGTTT
10775749 TT
1 TT
10775751 TTTTAATTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.43
Consensus pattern (23 bp):
TTGATCAATAAAAAATAATGTTT
Found at i:10775880 original size:15 final size:15
Alignment explanation
Indices: 10775857--10776140 Score: 175
Period size: 15 Copynumber: 19.0 Consensus size: 15
10775847 ACTTATAAAT
*
10775857 AATATTATATTAATA
1 AATAATATATTAATA
10775872 AATAATATATTATTAATA
1 AAT-A-ATA-TATTAATA
10775890 AATAAT-T-TTAATA
1 AATAATATATTAATA
10775903 AAT-A-ATATT-AT-
1 AATAATATATTAATA
*
10775914 AAT-ATATTCATAAAT-
1 AATAATA-T-ATTAATA
*
10775929 AATATTATATTAATA
1 AATAATATATTAATA
* *
10775944 AATATTATTATAAATA
1 AATAATA-TATTAATA
* *
10775960 AATATTATACTAATA
1 AATAATATATTAATA
**
10775975 TTTTAAT-T-TTAATA
1 -AATAATATATTAATA
*
10775989 AATAATATTTATTCATA
1 AATAATA--TATTAATA
*
10776006 AATAATATAATAATA
1 AATAATATATTAATA
* * *
10776021 AATATTGTTAATTTAATT
1 AATAAT-AT-A-TTAATA
10776039 AATAA-ATATT-AT-
1 AATAATATATTAATA
*
10776051 AATAATATATTAATT
1 AATAATATATTAATA
10776066 AATAATATTATTAATA
1 AATAATA-TATTAATA
* * *
10776082 AACAATATACTATTA
1 AATAATATATTAATA
10776097 ATATAATATATTAATA
1 A-ATAATATATTAATA
10776113 AAT-AT-TATTAATA
1 AATAATATATTAATA
10776126 AATAATATATTAATA
1 AATAATATATTAATA
10776141 TATTAATAAA
Statistics
Matches: 213, Mismatches: 29, Indels: 54
0.72 0.10 0.18
Matches are distributed among these distances:
11 4 0.02
12 10 0.05
13 34 0.16
14 21 0.10
15 59 0.28
16 50 0.23
17 16 0.08
18 19 0.09
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
AATAATATATTAATA
Found at i:10775931 original size:54 final size:54
Alignment explanation
Indices: 10775862--10776153 Score: 191
Period size: 54 Copynumber: 5.3 Consensus size: 54
10775852 TAAATAATAT
10775862 TATATTAATAAATAATA-TATTATTAATAAATAATT-TTAATAAAT-AATATTATAA
1 TATATTAATAAATAATATTA-TATTAATAAAT-ATTATT-ATAAATAAATATTATAA
*
10775916 TATATTCATAAATAATATTATATTAATAAATATTATTATAAATAAATATTATACTAA
1 TATATTAATAAATAATATTATATTAATAAATATTATTATAAATAAATA-T-TA-TAA
* * * *
10775973 TATTTTAATTTTAATAAATAATATT-TATTCATAAATAATATAAT-AATAAATATTGTTAA
1 TA---T-A--TTAATAAATAATATTATATTAATAAATATTATTATAAATAAATATT-ATAA
* * * * *
10776032 TTTAATTAATAAATATTATAATAATATATTAATTAATAATATTATTAATAAACA--AT-A
1 TAT-ATTAATAAATA--AT-AT--TATATTAATAAATATTATTATAAATAAATATTATAA
10776089 TACTATTAAT--AT-A-A-TATATTAATAAATATTATTAATAAAT-AATA-TATTAA
1 TA-TATTAATAAATAATATTATATTAATAAATATTATT-ATAAATAAATATTA-TAA
10776139 TATATTAATAAATAA
1 TATATTAATAAATAA
10776154 GATAAAAAAT
Statistics
Matches: 193, Mismatches: 17, Indels: 58
0.72 0.06 0.22
Matches are distributed among these distances:
47 20 0.10
48 6 0.03
49 8 0.04
50 4 0.02
51 2 0.01
52 2 0.01
53 9 0.05
54 43 0.22
55 5 0.03
56 7 0.04
57 15 0.08
58 2 0.01
59 6 0.03
60 18 0.09
61 16 0.08
62 16 0.08
63 14 0.07
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (54 bp):
TATATTAATAAATAATATTATATTAATAAATATTATTATAAATAAATATTATAA
Found at i:10775952 original size:13 final size:13
Alignment explanation
Indices: 10775872--10776152 Score: 136
Period size: 13 Copynumber: 21.6 Consensus size: 13
10775862 TATATTAATA
10775872 AATAATATATTATT
1 AATAA-ATATTATT
10775886 AATAAATAATT-TT
1 AATAAAT-ATTATT
*
10775899 AATAAATAATATT
1 AATAAATATTATT
*
10775912 -ATAATATATTCATA
1 AATAA-ATATT-ATT
10775926 AAT-AATATTATATT
1 AATAAATA-T-TATT
10775940 AATAAATATTATT
1 AATAAATATTATT
*
10775953 -ATAAATAAATATT
1 AATAAAT-ATTATT
10775966 -ATACTAATATT-TT
1 AATA--AATATTATT
*
10775979 AAT---T-TTAAT
1 AATAAATATTATT
10775988 AA-ATAATATTTATT
1 AATA-AATA-TTATT
* *
10776002 CATAAATAATATAAT
1 AATAAAT-AT-TATT
*
10776017 AATAAATATTGTT
1 AATAAATATTATT
*
10776030 AAT---T-TAATT
1 AATAAATATTATT
10776039 AATAAATATTA-T
1 AATAAATATTATT
10776051 AATAATATATTAATT
1 AATAA-ATATT-ATT
10776066 AAT-AATATTATT
1 AATAAATATTATT
10776078 AATAAACAATATACTATT
1 AAT--A-AATAT--TATT
10776096 AATATAATA-TATT
1 AATA-AATATTATT
10776109 AATAAATATTATT
1 AATAAATATTATT
*
10776122 AATAAATAATA-T
1 AATAAATATTATT
*
10776134 -ATTAATA-TATT
1 AATAAATATTATT
10776145 AATAAATA
1 AATAAATA
10776153 AGATAAAAAA
Statistics
Matches: 209, Mismatches: 20, Indels: 78
0.68 0.07 0.25
Matches are distributed among these distances:
8 2 0.01
9 10 0.05
10 3 0.01
11 7 0.03
12 37 0.18
13 73 0.35
14 35 0.17
15 25 0.12
16 10 0.05
18 7 0.03
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (13 bp):
AATAAATATTATT
Found at i:10776037 original size:21 final size:22
Alignment explanation
Indices: 10776008--10776132 Score: 66
Period size: 21 Copynumber: 5.6 Consensus size: 22
10775998 TATTCATAAA
10776008 TAATATAA-TAATAAATATTGT
1 TAATATAATTAATAAATATTGT
* *
10776029 TAATTTAATTAATAAATATT-A
1 TAATATAATTAATAAATATTGT
*
10776050 TAATAATATATTAATTAATAATATTAT
1 TAAT-ATA-ATTAA-T-A-AATATTGT
* * *
10776077 TAATA-AA-CAATATACTATTAAT
1 TAATATAATTAATA-AATATT-GT
*
10776099 ATAATAT-ATTAATAAATATTAT
1 -TAATATAATTAATAAATATTGT
10776121 TAATA-AA-TAATA
1 TAATATAATTAATA
10776133 TATTAATATA
Statistics
Matches: 84, Mismatches: 8, Indels: 25
0.72 0.07 0.21
Matches are distributed among these distances:
20 5 0.06
21 24 0.29
22 18 0.21
23 18 0.21
24 6 0.07
25 2 0.02
26 7 0.08
27 4 0.05
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (22 bp):
TAATATAATTAATAAATATTGT
Found at i:10776123 original size:83 final size:82
Alignment explanation
Indices: 10775926--10776153 Score: 221
Period size: 83 Copynumber: 2.7 Consensus size: 82
10775916 TATATTCATA
* * *
10775926 AATAATATTATATTAATAAATATTATTATAAATAAATATTATACTAATATTTTAATTTTAATAAA
1 AATAATAATATATTAATAAATATTA-T-T-AATAAATATTATAATAATATATTAA--TTAAT-AA
* ** *
10775991 TAATATTTATTCATAAATAATAT
60 TAATATTAATAAACAAATAATAT
* * *
10776014 AATAATAA-ATATT-GTTAAT-TTAATTAATAAATATTATAATAATATATTAATTAATAATATTA
1 AATAATAATATATTAATAAATATT-ATTAATAAATATTATAATAATATATTAATTAATAATAATA
*
10776076 TTAATAAACAATATACTATT
65 TTAATAAACAA-ATAATA-T
* * *
10776096 AAT-ATAATATATTAATAAATATTATTAATAAATAATATATTAATATATTAATAAATAA
1 AATAATAATATATTAATAAATATTATTAATAAATATTATAATAATATATTAATTAATAA
10776154 GATAAAAAAT
Statistics
Matches: 118, Mismatches: 16, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
80 13 0.11
81 14 0.12
82 9 0.08
83 59 0.50
84 3 0.03
85 3 0.03
86 5 0.04
87 5 0.04
88 7 0.06
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (82 bp):
AATAATAATATATTAATAAATATTATTAATAAATATTATAATAATATATTAATTAATAATAATAT
TAATAAACAAATAATAT
Found at i:10776158 original size:28 final size:28
Alignment explanation
Indices: 10775868--10776171 Score: 102
Period size: 31 Copynumber: 10.8 Consensus size: 28
10775858 ATATTATATT
* * *
10775868 AATAAATAATATATTATTAATAAATAATTTT
1 AATAAATAATATATTAATAA-ATATAA--TA
* *
10775899 AATAAATAATAT-TATAATATAT-TCATA
1 AATAAATAATATAT-TAATAAATATAATA
*
10775926 AAT-AATATTATATTAATAAATATTATTATA
1 AATAAATAATATATTAATAAATA-TA--ATA
* * * * *
10775956 AATAAATATTATACTAAT-ATTTTAATTTT
1 AATAAATAATATATTAATAAATATAA--TA
*
10775985 AATAAATAATAT-TTATTCATAA-ATAATA
1 AATAAATAATATATTAAT-A-AATATAATA
* * * *
10776013 TAAT-AATAA-ATATT-GTTAATTTAATT
1 -AATAAATAATATATTAATAAATATAATA
*
10776039 AATAAAT-AT-TA-TAAT-AATAT-ATT
1 AATAAATAATATATTAATAAATATAATA
* *
10776062 AATTAATAATATTATTAATAAACA-ATATA
1 AATAAATAATA-TATTAATAAATATA-ATA
* * *
10776091 CTATTAATATAATATATTAATAAATATTATT
1 --AATAA-ATAATATATTAATAAATATAATA
*
10776122 AATAAATAATATATTAATATAT-TAATA
1 AATAAATAATATATTAATAAATATAATA
* *
10776149 AATAAGATAA-AAAATAATAAATA
1 AATAA-ATAATATATTAATAAATA
10776172 ATTTTATTTT
Statistics
Matches: 203, Mismatches: 39, Indels: 65
0.66 0.13 0.21
Matches are distributed among these distances:
23 9 0.04
24 7 0.03
25 9 0.04
26 23 0.11
27 30 0.15
28 35 0.17
29 25 0.12
30 13 0.06
31 46 0.23
32 6 0.03
ACGTcount: A:0.55, C:0.02, G:0.01, T:0.43
Consensus pattern (28 bp):
AATAAATAATATATTAATAAATATAATA
Found at i:10776230 original size:19 final size:19
Alignment explanation
Indices: 10776185--10776230 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
10776175 TTATTTTAAG
*
10776185 TATTTTTATATTAACATAA
1 TATTTTAATATTAACATAA
*
10776204 TATTTTAATATTAA-ATAT
1 TATTTTAATATTAACATAA
10776222 TATTATTAA
1 TATT-TTAA
10776231 AATATAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTTTAATATTAACATAA
Found at i:10776251 original size:16 final size:17
Alignment explanation
Indices: 10776220--10776268 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
10776210 AATATTAAAT
10776220 ATTATTATTAAAATA-TA
1 ATTATT-TTAAAATATTA
*
10776237 ATTATTTTTAAATATTA
1 ATTATTTTAAAATATTA
*
10776254 ATAATTTTAATAATA
1 ATTATTTTAA-AATA
10776269 AATAATTTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 7 0.26
17 16 0.59
18 4 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATTATTTTAAAATATTA
Found at i:10776272 original size:16 final size:16
Alignment explanation
Indices: 10776161--10776307 Score: 53
Period size: 16 Copynumber: 9.2 Consensus size: 16
10776151 TAAGATAAAA
10776161 AATAATAAATAATTTT
1 AATAATAAATAATTTT
** *
10776177 -ATTTTAAGT-ATTTT
1 AATAATAAATAATTTT
* *
10776191 TATATTAACATAATATTTT
1 AATAATAA-AT-A-ATTTT
*
10776210 AATATTAAATATTATTATT
1 AATAATAAATA--ATT-TT
*
10776229 AA-AATATAATTATTTTT
1 AATAATA-AA-TAATTTT
*
10776246 AA-ATATTAATAATTTT
1 AATA-ATAAATAATTTT
10776262 AATAATAAATAA-TTT
1 AATAATAAATAATTTT
*
10776277 --CAAT--AT-ATTTT
1 AATAATAAATAATTTT
*
10776288 AATAATAAATGATTTT
1 AATAATAAATAATTTT
10776304 AATA
1 AATA
10776308 GTTTAATAGT
Statistics
Matches: 101, Mismatches: 13, Indels: 34
0.68 0.09 0.23
Matches are distributed among these distances:
10 1 0.01
11 5 0.05
13 6 0.06
14 5 0.05
15 17 0.17
16 25 0.25
17 9 0.09
18 13 0.13
19 18 0.18
20 2 0.02
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (16 bp):
AATAATAAATAATTTT
Found at i:10776286 original size:26 final size:25
Alignment explanation
Indices: 10776253--10776315 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
10776243 TTTAAATATT
10776253 AATAATTTTAATAATAAATAATTTC
1 AATAATTTTAATAATAAATAATTTC
* *
10776278 AATATATTTTAATAATAAATGATTTT
1 AATA-ATTTTAATAATAAATAATTTC
*
10776304 AAT-AGTTTAATA
1 AATAATTTTAATA
10776316 GTTATATTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.24
25 4 0.12
26 22 0.65
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (25 bp):
AATAATTTTAATAATAAATAATTTC
Found at i:10777351 original size:6 final size:6
Alignment explanation
Indices: 10777340--10777364 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
10777330 AGTAGTGAGA
10777340 AGCTCG AGCTCG AGCTCG AGCTCG A
1 AGCTCG AGCTCG AGCTCG AGCTCG A
10777365 CTCACAACTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.32, G:0.32, T:0.16
Consensus pattern (6 bp):
AGCTCG
Found at i:10777545 original size:6 final size:6
Alignment explanation
Indices: 10777534--10777563 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
10777524 ATTATTCATG
*
10777534 CTCGAA CTCGAA CTCGAA CTCGGA CTCGAA
1 CTCGAA CTCGAA CTCGAA CTCGAA CTCGAA
10777564 TTATTTTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.30, C:0.33, G:0.20, T:0.17
Consensus pattern (6 bp):
CTCGAA
Found at i:10782770 original size:5 final size:5
Alignment explanation
Indices: 10782760--10782787 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
10782750 ATTGGTACCT
10782760 ACAAA ACAAA ACAAA ACAAA ACAAA ACA
1 ACAAA ACAAA ACAAA ACAAA ACAAA ACA
10782788 TCTAACAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (5 bp):
ACAAA
Found at i:10785556 original size:24 final size:24
Alignment explanation
Indices: 10785505--10785583 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 24
10785495 CATTTTTTGG
*
10785505 TTTTTTTATTTTTT-TA-TTTGACT
1 TTTTTTTATTTTTTGAATTTTGA-T
10785528 CTTTTTTTATTTTTTGAATTTTGA-
1 -TTTTTTTATTTTTTGAATTTTGAT
10785552 TTTTTTTAGGTTTTTTGAATTTT-AT
1 TTTTTTTA--TTTTTTGAATTTTGAT
10785577 TTTTTTT
1 TTTTTTT
10785584 TTGGATTTTT
Statistics
Matches: 49, Mismatches: 1, Indels: 9
0.83 0.02 0.15
Matches are distributed among these distances:
23 8 0.16
24 15 0.31
25 21 0.43
26 5 0.10
ACGTcount: A:0.14, C:0.03, G:0.08, T:0.76
Consensus pattern (24 bp):
TTTTTTTATTTTTTGAATTTTGAT
Found at i:10785583 original size:25 final size:23
Alignment explanation
Indices: 10785499--10785582 Score: 84
Period size: 24 Copynumber: 3.6 Consensus size: 23
10785489 TTTTAGCATT
* *
10785499 TTTTGGTTTTTTTATTTTTT-TA
1 TTTTGATTTTTTTATTTTTTGAA
10785521 -TTTGACTCTTTTTTTATTTTTTGAA
1 TTTTGA---TTTTTTTATTTTTTGAA
10785546 TTTTGATTTTTTTAGGTTTTTTGAA
1 TTTTGATTTTTTTA--TTTTTTGAA
10785571 TTTT-ATTTTTTT
1 TTTTGATTTTTTT
10785583 TTTGGATTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 12
0.79 0.03 0.18
Matches are distributed among these distances:
21 4 0.08
23 8 0.15
24 22 0.42
25 14 0.26
26 5 0.09
ACGTcount: A:0.13, C:0.02, G:0.10, T:0.75
Consensus pattern (23 bp):
TTTTGATTTTTTTATTTTTTGAA
Found at i:10785760 original size:44 final size:46
Alignment explanation
Indices: 10785690--10785798 Score: 125
Period size: 44 Copynumber: 2.4 Consensus size: 46
10785680 ATTAGAAGCA
* * *
10785690 CACAACTTTAGAAAATAAATCTAAAAATTC-TCTAATTAGAGACT-
1 CACAACTTTTGAAAATAAATCTAAAAAATCGTCTAATTACAGACTC
*
10785734 CACAACTTTTGAAAATAAAT-TAAAAAAATCGTTTAATTACAGACTC
1 CACAACTTTTGAAAATAAATCT-AAAAAATCGTCTAATTACAGACTC
* *
10785780 CATAATTTTTGAAATATAA
1 CACAACTTTTGAAA-ATAA
10785799 TATAATAATT
Statistics
Matches: 55, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
43 1 0.02
44 26 0.47
45 12 0.22
46 12 0.22
47 4 0.07
ACGTcount: A:0.48, C:0.14, G:0.06, T:0.32
Consensus pattern (46 bp):
CACAACTTTTGAAAATAAATCTAAAAAATCGTCTAATTACAGACTC
Found at i:10786391 original size:50 final size:49
Alignment explanation
Indices: 10786287--10786400 Score: 133
Period size: 50 Copynumber: 2.3 Consensus size: 49
10786277 CAGAAGCTTC
* * *
10786287 ACAACTTT-AAAATTTCATCTGAAAAAGCTCTTCATAAACAGAGGGTAA
1 ACAACTTTAAAAATCTCATCTGAAAAAGCTCTTCATAAACAAAGGCTAA
* * * *
10786335 ATAACTTTAAAAATCTCATTTGACAAAAGTTCATTC-TAAATAAAGGCTAA
1 ACAACTTTAAAAATCTCATCTGA-AAAAGCTC-TTCATAAACAAAGGCTAA
10786385 ACAACTTTAAAAATCT
1 ACAACTTTAAAAATCT
10786401 GACCATTTTT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
48 7 0.13
49 12 0.22
50 33 0.60
51 3 0.05
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.30
Consensus pattern (49 bp):
ACAACTTTAAAAATCTCATCTGAAAAAGCTCTTCATAAACAAAGGCTAA
Found at i:10787848 original size:44 final size:43
Alignment explanation
Indices: 10787764--10787987 Score: 272
Period size: 43 Copynumber: 5.2 Consensus size: 43
10787754 TATTTAAAGT
* * * *
10787764 TTTTAAAGTTATTTAACCTTTGTATAAAAGAA-CCCATTTCTTA
1 TTTTAAAGTTGTTTAGCCTCTGTAT-AGAGAAGCCCATTTCTTA
* * * *
10787807 ATTTAAAGTTGTTTTAGCCTCTATATAGAGGAGCCCATTTCTAAA
1 TTTTAAAGTTG-TTTAGCCTCTGTATAGAGAAGCCCATTTCT-TA
** *
10787852 TTTTAAAGTTGTTTAGCCTCTGTATAGA-AGAGCTTATTTTTTA
1 TTTTAAAGTTGTTTAGCCTCTGTATAGAGA-AGCCCATTTCTTA
***
10787895 TTTTAAAGTTGTTTAGCCTCTGTATAGAGAAATTCATTTCTTA
1 TTTTAAAGTTGTTTAGCCTCTGTATAGAGAAGCCCATTTCTTA
10787938 TTTTAAAGTTGTTTAGCCTCTGTATAGAGAAGCCCATTTCTTA
1 TTTTAAAGTTGTTTAGCCTCTGTATAGAGAAGCCCATTTCTTA
10787981 TTTTAAA
1 TTTTAAA
10787988 TTTGGTTACT
Statistics
Matches: 154, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
43 98 0.64
44 45 0.29
45 11 0.07
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (43 bp):
TTTTAAAGTTGTTTAGCCTCTGTATAGAGAAGCCCATTTCTTA
Found at i:10788055 original size:70 final size:70
Alignment explanation
Indices: 10787969--10788109 Score: 273
Period size: 70 Copynumber: 2.0 Consensus size: 70
10787959 GTATAGAGAA
10787969 GCCCATTTCTTATTTTAAATTTGGTTACTTTTATATAAAGGAGTTTAATTTGTTGAACCTTGGTT
1 GCCCATTTCTTATTTTAAATTTGGTTACTTTTATATAAAGGAGTTTAATTTGTTGAACCTTGGTT
10788034 TAGAG
66 TAGAG
*
10788039 GCCCATTTCTTATTTTAAATTTGGTTACTTTTATATAAAGGAGTTTAATTTGTTGAACCTTTGTT
1 GCCCATTTCTTATTTTAAATTTGGTTACTTTTATATAAAGGAGTTTAATTTGTTGAACCTTGGTT
10788104 TAGAG
66 TAGAG
10788109 G
1 G
10788110 AGTTATTAGA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.26, C:0.10, G:0.17, T:0.48
Consensus pattern (70 bp):
GCCCATTTCTTATTTTAAATTTGGTTACTTTTATATAAAGGAGTTTAATTTGTTGAACCTTGGTT
TAGAG
Found at i:10790890 original size:12 final size:12
Alignment explanation
Indices: 10790873--10790911 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
10790863 ATGTGCAAAG
10790873 AAAAAAATAAGC
1 AAAAAAATAAGC
*
10790885 AAAAAAAT-AGA
1 AAAAAAATAAGC
*
10790896 AAAAAAAGAAGC
1 AAAAAAATAAGC
10790908 AAAA
1 AAAA
10790912 GAAAGAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.79, C:0.05, G:0.10, T:0.05
Consensus pattern (12 bp):
AAAAAAATAAGC
Found at i:10790899 original size:23 final size:22
Alignment explanation
Indices: 10790869--10790919 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 22
10790859 GAAAATGTGC
*
10790869 AAAG-AAAAAAATAAGCAAAAA
1 AAAGAAAAAAAAGAAGCAAAAA
*
10790890 AATAGAAAAAAAAGAAGCAAAAG
1 AA-AGAAAAAAAAGAAGCAAAAA
10790913 AAAGAAA
1 AAAGAAA
10790920 TAAAGCGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 2 0.08
22 7 0.27
23 17 0.65
ACGTcount: A:0.78, C:0.04, G:0.14, T:0.04
Consensus pattern (22 bp):
AAAGAAAAAAAAGAAGCAAAAA
Found at i:10792593 original size:23 final size:23
Alignment explanation
Indices: 10792562--10792622 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
10792552 TTTAAAATTG
* *
10792562 AAAAGAAAAGAATTTCACAAACA
1 AAAAAAAAAGAATTTCAAAAACA
10792585 AAAAAAAAAGAATTTCAAAAACA
1 AAAAAAAAAGAATTTCAAAAACA
* *
10792608 GAAAAAAAGGAATTT
1 AAAAAAAAAGAATTT
10792623 TTAAGCATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.67, C:0.08, G:0.10, T:0.15
Consensus pattern (23 bp):
AAAAAAAAAGAATTTCAAAAACA
Found at i:10793449 original size:2 final size:2
Alignment explanation
Indices: 10793442--10793472 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
10793432 ATTAGAATAA
*
10793442 AC AC AC AC AC AA AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
10793473 TATATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.45, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:10793647 original size:13 final size:13
Alignment explanation
Indices: 10793631--10793664 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
10793621 AAGTCCCATC
*
10793631 TTATTTTCATTTT
1 TTATTTTAATTTT
10793644 TTA-TTTAATTTT
1 TTATTTTAATTTT
10793656 TTATTTTAA
1 TTATTTTAA
10793665 GTTATGAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (13 bp):
TTATTTTAATTTT
Found at i:10795522 original size:34 final size:34
Alignment explanation
Indices: 10795474--10795562 Score: 115
Period size: 34 Copynumber: 2.6 Consensus size: 34
10795464 CCCAACTTCG
** *
10795474 ACTTATGTCGCTGATGACTACATTACCAGCACCA
1 ACTTATGTCGCTGATGACTACAGCACCAACACCA
* *
10795508 ACTTATGTCACTGATGACTACAGCACCAACTCCA
1 ACTTATGTCGCTGATGACTACAGCACCAACACCA
* *
10795542 ACTTACGTCGCTGATAACTAC
1 ACTTATGTCGCTGATGACTAC
10795563 CTCAGCTTCC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 47 1.00
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.26
Consensus pattern (34 bp):
ACTTATGTCGCTGATGACTACAGCACCAACACCA
Found at i:10797858 original size:20 final size:20
Alignment explanation
Indices: 10797835--10797873 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
10797825 TGTGAGCTTG
*
10797835 GTTTAATTTTATATTAGTTT
1 GTTTAATTATATATTAGTTT
* *
10797855 GTTTAGTTATATTTTAGTT
1 GTTTAATTATATATTAGTT
10797874 ATTATTTGAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.64
Consensus pattern (20 bp):
GTTTAATTATATATTAGTTT
Found at i:10797922 original size:19 final size:20
Alignment explanation
Indices: 10797898--10797949 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
10797888 TAATTATGAT
10797898 TATTTAATAATTTTTTA-TA
1 TATTTAATAATTTTTTATTA
*
10797917 TATTTAAATAATATTTTATTA
1 TATTT-AATAATTTTTTATTA
*
10797938 TAATT-ATAATTT
1 TATTTAATAATTT
10797950 ATATTTATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
19 11 0.39
20 11 0.39
21 6 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTTAATAATTTTTTATTA
Found at i:10797928 original size:20 final size:19
Alignment explanation
Indices: 10797898--10797935 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
10797888 TAATTATGAT
*
10797898 TATTTAATAATTTTTTATA
1 TATTTAATAATATTTTATA
10797917 TATTTAAATAATATTTTAT
1 TATTT-AATAATATTTTAT
10797936 TATAATTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TATTTAATAATATTTTATA
Found at i:10797938 original size:23 final size:23
Alignment explanation
Indices: 10797902--10797976 Score: 61
Period size: 23 Copynumber: 3.3 Consensus size: 23
10797892 TATGATTATT
10797902 TAATAATTTT-TTATATATTTAAA
1 TAAT-ATTTTATTATATATTTAAA
*
10797925 TAATATTTTATTATA-ATTATAAT
1 TAATATTTTATTATATATT-TAAA
*
10797948 TTATATTTATAATT-T-TATTTAAA
1 TAATATTT-T-ATTATATATTTAAA
10797971 -AATATT
1 TAATATT
10797977 ATTTATGTGA
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
22 13 0.30
23 22 0.51
24 5 0.12
25 3 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
TAATATTTTATTATATATTTAAA
Found at i:10797957 original size:19 final size:18
Alignment explanation
Indices: 10797861--10797968 Score: 61
Period size: 18 Copynumber: 6.2 Consensus size: 18
10797851 GTTTGTTTAG
*
10797861 TTATATTT-TAGTTATTAT
1 TTATATTTATAATTA-TAT
*
10797879 TT-GATTTATTAATTATGA-
1 TTATATTTA-TAATTAT-AT
* *
10797897 TTAT-TTAATAATT-TTT
1 TTATATTTATAATTATAT
*
10797913 TATATATTTA-AATAATAT
1 T-TATATTTATAATTATAT
10797931 TT-TA-TTATAATTATAAT
1 TTATATTTATAATTAT-AT
*
10797948 TTATATTTATAATTTTAT
1 TTATATTTATAATTATAT
10797966 TTA
1 TTA
10797969 AAAATATTAT
Statistics
Matches: 68, Mismatches: 10, Indels: 24
0.67 0.10 0.24
Matches are distributed among these distances:
15 3 0.04
16 9 0.13
17 20 0.29
18 21 0.31
19 15 0.22
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (18 bp):
TTATATTTATAATTATAT
Found at i:10799945 original size:18 final size:16
Alignment explanation
Indices: 10799910--10799950 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
10799900 CTTTTGTTTG
*
10799910 TATTTAAATAAAGTAT
1 TATTTAAATAAAGAAT
10799926 TATTTCAAATGAAAGAAT
1 TATTT-AAAT-AAAGAAT
10799944 TATTTAA
1 TATTTAA
10799951 GGATTTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 5 0.23
17 6 0.27
18 11 0.50
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.41
Consensus pattern (16 bp):
TATTTAAATAAAGAAT
Found at i:10800019 original size:30 final size:31
Alignment explanation
Indices: 10799963--10800022 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
10799953 ATTTATTAAT
*
10799963 ATACAAATTAAAATTTTAGAAGTTTATTTGA
1 ATACAAATTAAAATATTAGAAGTTTATTTGA
10799994 ATACAAATT-AAATATTA-ATAGTTTATTTG
1 ATACAAATTAAAATATTAGA-AGTTTATTTG
10800023 GATTTTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 1 0.04
30 17 0.63
31 9 0.33
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.43
Consensus pattern (31 bp):
ATACAAATTAAAATATTAGAAGTTTATTTGA
Done.