Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 67 of 100
Found at i:12070997 original size:119 final size:119
Alignment explanation
Indices: 12070832--12071070 Score: 383
Period size: 119 Copynumber: 2.0 Consensus size: 119
12070822 TAGTAGGTAC
* *
12070832 TTAGTTTGAAAAGACAAAAGAAACAAAAAGATACTTTACGTGATCATCACTGAAGCAATTATATT
1 TTAGTTTGAAAAGACAAAAGAAACAAAAAGATACCTTACATGATCATCACTGAAGCAATTATATT
* * *
12070897 GGTAAGTTTTGAGG-AGGGGACAGGTAATTACTATCTTTCCATAGTGATCAAGGG
66 GGCAAGTTTTGAGGTA-GGGACAAGTAATTACTATCTTTCCACAGTGATCAAGGG
*
12070951 TTAGTTTGAAAAGACAAAAGAAACAAAAA-AGTACCTTACATTATCATCACTGAAGCAATTATAT
1 TTAGTTTGAAAAGACAAAAGAAACAAAAAGA-TACCTTACATGATCATCACTGAAGCAATTATAT
*
12071015 TGGCAAGTTTTGAGGTAGGGACAAGTAATTACTATCTTTCCACAGTGATCTAGGG
65 TGGCAAGTTTTGAGGTAGGGACAAGTAATTACTATCTTTCCACAGTGATCAAGGG
12071070 T
1 T
12071071 GATACAAGAA
Statistics
Matches: 111, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
118 1 0.01
119 109 0.98
120 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.20, T:0.29
Consensus pattern (119 bp):
TTAGTTTGAAAAGACAAAAGAAACAAAAAGATACCTTACATGATCATCACTGAAGCAATTATATT
GGCAAGTTTTGAGGTAGGGACAAGTAATTACTATCTTTCCACAGTGATCAAGGG
Found at i:12078223 original size:14 final size:14
Alignment explanation
Indices: 12078206--12078240 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
12078196 AAAAAAATTT
*
12078206 AAAAATATATTATA
1 AAAAATATAATATA
*
12078220 AAAAATATAATATT
1 AAAAATATAATATA
12078234 AAAAATA
1 AAAAATA
12078241 CATATGTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAAATATAATATA
Found at i:12081100 original size:23 final size:23
Alignment explanation
Indices: 12081059--12081102 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
12081049 CGCTTTAGTA
*
12081059 ATAAAAATTTCTCATCATTTTGG
1 ATAAAAATTTATCATCATTTTGG
12081082 ATAAAAATTATATCA-CATTTT
1 ATAAAAATT-TATCATCATTTT
12081103 AAAATAGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.41, C:0.11, G:0.05, T:0.43
Consensus pattern (23 bp):
ATAAAAATTTATCATCATTTTGG
Found at i:12081648 original size:17 final size:19
Alignment explanation
Indices: 12081626--12081661 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
12081616 GGTATTAGAA
12081626 CAATG-AAA-TTAAAAAAT
1 CAATGAAAATTTAAAAAAT
12081643 CAATGAAAATTTAAAAAAT
1 CAATGAAAATTTAAAAAAT
12081662 GTAATGGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 3 0.18
19 9 0.53
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.25
Consensus pattern (19 bp):
CAATGAAAATTTAAAAAAT
Found at i:12089819 original size:19 final size:19
Alignment explanation
Indices: 12089797--12089891 Score: 68
Period size: 19 Copynumber: 5.0 Consensus size: 19
12089787 AAGCAAAACT
*
12089797 TTCAAAGATTCTTAAAATA
1 TTCAAAGATTCTTAAAAAA
* **
12089816 TTCAAA-AGCTCACAAAAAA
1 TTCAAAGA-TTCTTAAAAAA
* *
12089835 CTCAAAGATTCTTAAAAGAG
1 TTCAAAGATTCTTAAAA-AA
** *
12089855 TTCAAAGATTCACAAACAA
1 TTCAAAGATTCTTAAAAAA
*
12089874 TACAAAGATT-TTAAAAAA
1 TTCAAAGATTCTTAAAAAA
12089892 ATTTATAGGT
Statistics
Matches: 55, Mismatches: 18, Indels: 7
0.69 0.22 0.09
Matches are distributed among these distances:
18 6 0.11
19 34 0.62
20 15 0.27
ACGTcount: A:0.53, C:0.15, G:0.07, T:0.25
Consensus pattern (19 bp):
TTCAAAGATTCTTAAAAAA
Found at i:12089888 original size:38 final size:38
Alignment explanation
Indices: 12089798--12089889 Score: 109
Period size: 38 Copynumber: 2.4 Consensus size: 38
12089788 AGCAAAACTT
*
12089798 TCAAAGATTCTTAAAATATTCAAAAGCTCACAAAAAAC
1 TCAAAGATTCTTAAAAGATTCAAAAGCTCACAAAAAAC
* *
12089836 TCAAAGATTCTTAAAAGAGTTC-AAAGATTCACAAACAA-
1 TCAAAGATTCTTAAAAGA-TTCAAAAG-CTCACAAAAAAC
12089874 TACAAAGATT-TTAAAA
1 T-CAAAGATTCTTAAAA
12089890 AAATTTATAG
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
38 28 0.58
39 20 0.42
ACGTcount: A:0.52, C:0.15, G:0.08, T:0.25
Consensus pattern (38 bp):
TCAAAGATTCTTAAAAGATTCAAAAGCTCACAAAAAAC
Found at i:12090076 original size:20 final size:21
Alignment explanation
Indices: 12090051--12090096 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
12090041 AGTTAAAAAA
*
12090051 TTCACAAAT-AATTTCAAATT
1 TTCACAAATAAATTTCAAAGT
12090071 TTCACAAATAAAATTTCAAAGT
1 TTCACAAAT-AAATTTCAAAGT
12090093 TTCA
1 TTCA
12090097 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.39
22 14 0.61
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (21 bp):
TTCACAAATAAATTTCAAAGT
Found at i:12090150 original size:24 final size:24
Alignment explanation
Indices: 12090120--12090315 Score: 101
Period size: 24 Copynumber: 8.5 Consensus size: 24
12090110 TCCCAAGTTA
*
12090120 TTTCAAAAATTCACATTTGAAAAT
1 TTTCAAAGATTCACATTTGAAAAT
* * *
12090144 TTTCAAAAATTCTCA-TTCAAACA-
1 TTTCAAAGATTCACATTTGAAA-AT
* * *
12090167 GTTCTAGAGATTCACATCT--AAAT
1 TTTC-AAAGATTCACATTTGAAAAT
**
12090190 TTTCAAAGATTTGCATTTGAAAAT
1 TTTCAAAGATTCACATTTGAAAAT
* **
12090214 TTTCAAAGATTCTCATTCAAAAAAT
1 TTTCAAAGATTCACATT-TGAAAAT
* *
12090239 TTT-AGAGATTCACA--TCAAAA-
1 TTTCAAAGATTCACATTTGAAAAT
** *
12090259 TTTCAAAGATTCTTATTTTAAAA-
1 TTTCAAAGATTCACATTTGAAAAT
* * *
12090282 TTT-AGAGATTTACATTT-AAGA-
1 TTTCAAAGATTCACATTTGAAAAT
12090303 TTTCAAAGATTCA
1 TTTCAAAGATTCA
12090316 TAGTCAAAAA
Statistics
Matches: 130, Mismatches: 31, Indels: 24
0.70 0.17 0.13
Matches are distributed among these distances:
20 3 0.02
21 18 0.14
22 28 0.22
23 21 0.16
24 51 0.39
25 9 0.07
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.38
Consensus pattern (24 bp):
TTTCAAAGATTCACATTTGAAAAT
Found at i:12090210 original size:70 final size:69
Alignment explanation
Indices: 12090119--12090269 Score: 221
Period size: 70 Copynumber: 2.2 Consensus size: 69
12090109 TTCCCAAGTT
* ** * *
12090119 ATTTCAAAAATTCACATTTGAAAATTTTCAAAAATTCTCATTCAAACAGTTCTAGAGATTCACAT
1 ATTTCAAAGATTTGCATTTGAAAATTTTCAAAAATTCTCATTCAAAAAATTCTAGAGATTCACAT
12090184 CTAAA
66 C-AAA
* * *
12090189 TTTTCAAAGATTTGCATTTGAAAATTTTCAAAGATTCTCATTCAAAAAATTTTAGAGATTCACAT
1 ATTTCAAAGATTTGCATTTGAAAATTTTCAAAAATTCTCATTCAAAAAATTCTAGAGATTCACAT
12090254 CAAA
66 CAAA
12090258 ATTTCAAAGATT
1 ATTTCAAAGATT
12090270 CTTATTTTAA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
69 14 0.19
70 58 0.81
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (69 bp):
ATTTCAAAGATTTGCATTTGAAAATTTTCAAAAATTCTCATTCAAAAAATTCTAGAGATTCACAT
CAAA
Found at i:12090306 original size:44 final size:46
Alignment explanation
Indices: 12090186--12090338 Score: 152
Period size: 44 Copynumber: 3.3 Consensus size: 46
12090176 ATTCACATCT
* *
12090186 AAATTTTCAAAGATTTGCATTTGAAAATTTTCAAAGATTCTCATTCAAA
1 AAATTTT-AGAGATTTACATTT-AAAA-TTTCAAAGATTCTCATTCAAA
* * * **
12090235 AAATTTTAGAGATTCACA-TCAAAATTTCAAAGATTCTTATT-TTA
1 AAATTTTAGAGATTTACATTTAAAATTTCAAAGATTCTCATTCAAA
* *
12090279 AAA-TTTAGAGATTTACATTTAAGATTTCAAAGATTCAT-AGTCAAA
1 AAATTTTAGAGATTTACATTTAAAATTTCAAAGATTC-TCATTCAAA
*
12090324 AAATTTTAAAGATTT
1 AAATTTTAGAGATTT
12090339 CTGTAGACAC
Statistics
Matches: 86, Mismatches: 14, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
43 13 0.15
44 22 0.26
45 21 0.24
46 14 0.16
47 1 0.01
48 8 0.09
49 7 0.08
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.39
Consensus pattern (46 bp):
AAATTTTAGAGATTTACATTTAAAATTTCAAAGATTCTCATTCAAA
Found at i:12090599 original size:17 final size:17
Alignment explanation
Indices: 12090577--12090612 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
12090567 ATTTATATAG
12090577 TTATA-TATGTATTATTA
1 TTATATTAT-TATTATTA
12090594 TTATATTATTATTATTA
1 TTATATTATTATTATTA
12090611 TT
1 TT
12090613 TTTTTATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
TTATATTATTATTATTA
Found at i:12090603 original size:14 final size:15
Alignment explanation
Indices: 12090580--12090611 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
12090570 TATATAGTTA
12090580 TATATGTATTATTAT
1 TATATGTATTATTAT
12090595 TATAT-TATTATTAT
1 TATATGTATTATTAT
12090609 TAT
1 TAT
12090612 TTTTTTATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
TATATGTATTATTAT
Found at i:12090619 original size:14 final size:14
Alignment explanation
Indices: 12090588--12090630 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
12090578 TATATATGTA
* *
12090588 TTATTATTATATTA
1 TTATTATTATTTTT
12090602 TTATTATTATTTTT
1 TTATTATTATTTTT
*
12090616 TTATAATATATTTTT
1 TTATTAT-TATTTTT
12090631 AGGTTTATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATTATTATTTTT
Found at i:12091040 original size:27 final size:24
Alignment explanation
Indices: 12090997--12091051 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 24
12090987 CTGGGAGTGA
*
12090997 GAAAAAATTTTTAGAAATTTTTGG
1 GAAAAAATTTTTAGAAATTTCTGG
*
12091021 CGAAAAAATTCTTTTGGAAATTTCTGG
1 -GAAAAAA-T-TTTTAGAAATTTCTGG
12091048 GAAA
1 GAAA
12091052 TTTTCAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 7 0.27
26 5 0.19
27 14 0.54
ACGTcount: A:0.40, C:0.05, G:0.18, T:0.36
Consensus pattern (24 bp):
GAAAAAATTTTTAGAAATTTCTGG
Found at i:12091572 original size:11 final size:11
Alignment explanation
Indices: 12091553--12091674 Score: 51
Period size: 10 Copynumber: 10.6 Consensus size: 11
12091543 TTTTTTTTTG
12091553 TTTATTTATTTA
1 TTTATTTA-TTA
12091565 TTTATTATATTA
1 TTTATT-TATTA
*
12091577 GGTTTATTTAATA
1 --TTTATTTATTA
*
12091590 -TTCTTT-TTA
1 TTTATTTATTA
12091599 TCTTAGTTTTATT-
1 T-TTA--TTTATTA
*
12091612 TTTATTT-TTGT
1 TTTATTTATT-A
*
12091623 TTTACTTTTCTTTA
1 TTTA--TTTAT-TA
12091637 TTT-TTTATTA
1 TTTATTTATTA
12091647 TTTATTTA-TA
1 TTTATTTATTA
12091657 TTT-TTTATTA
1 TTTATTTATTA
12091667 TTCTATTT
1 TT-TATTT
12091675 TCTTCAAATA
Statistics
Matches: 86, Mismatches: 6, Indels: 36
0.67 0.05 0.28
Matches are distributed among these distances:
9 8 0.09
10 22 0.26
11 15 0.17
12 15 0.17
13 13 0.15
14 12 0.14
15 1 0.01
ACGTcount: A:0.20, C:0.04, G:0.03, T:0.72
Consensus pattern (11 bp):
TTTATTTATTA
Found at i:12091609 original size:27 final size:26
Alignment explanation
Indices: 12091552--12091612 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
12091542 TTTTTTTTTT
12091552 GTTTATTTATTTATTTATTATATTAG
1 GTTTATTTATTTATTTATTATATTAG
* *
12091578 GTTTATTTAATATTCTTT-TTATCTTAG
1 GTTTATTT-AT-TTATTTATTATATTAG
*
12091605 TTTTATTT
1 GTTTATTT
12091613 TTATTTTTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 8 0.27
27 17 0.57
28 5 0.17
ACGTcount: A:0.23, C:0.03, G:0.07, T:0.67
Consensus pattern (26 bp):
GTTTATTTATTTATTTATTATATTAG
Found at i:12091615 original size:17 final size:18
Alignment explanation
Indices: 12091592--12091631 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
12091582 ATTTAATATT
12091592 CTTTTTATCTTAGTTTTA
1 CTTTTTATCTTAGTTTTA
* *
12091610 -TTTTTATTTTTGTTTTA
1 CTTTTTATCTTAGTTTTA
12091627 CTTTT
1 CTTTT
12091632 CTTTATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.75
Consensus pattern (18 bp):
CTTTTTATCTTAGTTTTA
Found at i:12091647 original size:10 final size:10
Alignment explanation
Indices: 12091634--12091668 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
12091624 TTACTTTTCT
12091634 TTATTTTTTA
1 TTATTTTTTA
12091644 TTATTTATTTA
1 TTATTT-TTTA
12091655 -TATTTTTTA
1 TTATTTTTTA
12091664 TTATT
1 TTATT
12091669 CTATTTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
9 4 0.17
10 15 0.65
11 4 0.17
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
TTATTTTTTA
Found at i:12091658 original size:20 final size:21
Alignment explanation
Indices: 12091635--12091674 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
12091625 TACTTTTCTT
12091635 TATTTTTTATTATT-TATTTA
1 TATTTTTTATTATTCTATTTA
12091655 TATTTTTTATTATTCTATTT
1 TATTTTTTATTATTCTATTT
12091675 TCTTCAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (21 bp):
TATTTTTTATTATTCTATTTA
Found at i:12091773 original size:59 final size:60
Alignment explanation
Indices: 12091683--12092100 Score: 426
Period size: 59 Copynumber: 7.0 Consensus size: 60
12091673 TTTCTTCAAA
* *
12091683 TAAAAATCAAATTTTCCAAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTT-C-AAAAAAGATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * * * * *
12091745 TAGAAAT-ACATTTTCAAAAAAGAGATTTTT-GAGGAAAAGTTGAAAATATCAAATTTCCT
1 TAAAAATCAAAATTTCAAAAAAGATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
* * * *
12091804 T-AAGATCAAAGTTTCAAAAAAAATATATATATATTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATCAAAATTTC---AAAAA-AGATAT-T-TTTAGGGAAAAGTTGAAAGTATCAATTTTCC
12091868 T
60 T
* * *
12091869 TAAAAATCAAAATTTC-CAAAA-ATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAATCAAAATTTCAAAAAAGATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * * *
12091927 TAAAAAT-ATAATTTCAAAAAAGGT-TTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAATCAAAATTTCAAAAAAGATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
* * *
12091986 TAAAAAT-ATAATTTCAAAAAAGGT-TTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTCAAAAAAGATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
* * *
12092045 TGAGAATCAAAATTTTC-GAAAA-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT
1 TAAAAATCAAAA-TTTCAAAAAAGATATTTTTAGGGAAAAGTTGAAAGTATCAATTTT
12092101 TCTACACAAA
Statistics
Matches: 308, Mismatches: 32, Indels: 35
0.82 0.09 0.09
Matches are distributed among these distances:
57 7 0.02
58 50 0.16
59 161 0.52
60 18 0.06
61 11 0.04
62 14 0.05
63 4 0.01
64 1 0.00
65 29 0.09
66 13 0.04
ACGTcount: A:0.44, C:0.07, G:0.13, T:0.35
Consensus pattern (60 bp):
TAAAAATCAAAATTTCAAAAAAGATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:12092003 original size:182 final size:177
Alignment explanation
Indices: 12091704--12092103 Score: 547
Period size: 182 Copynumber: 2.2 Consensus size: 177
12091694 TTTTCCAAAA
* * *
12091704 AAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATACATTTTCAAAAAAGAG
1 AAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATACAATTTCAAAAAAGAG
* *
12091769 ATTTTTGAGGAAAAGTTGAAAATATCAAATTTCCTTAAGATCAAAGTTTCAAAAAAAATATATAT
66 ATTTTTGAGGAAAAGTTGAAAATATCAAATTTCCTTAAAATCAAAGTTTC--AAAAAAGAT-T-T
*
12091834 ATATTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAA-TTTCC
127 -T-TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTCC
* *
12091886 AAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATATAATTTCAAAAAAG-G
1 AAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATACAATTTCAAAAAAGAG
* * * * *
12091950 TTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-ATAA-TTTCAAAAAAGGTTTT
66 -ATTTTTGAGGAAAAGTTGAAAATATCAAATTTCCTT-AAAATCA-AAGTTTCAAAAAAGATTTT
* * *
12092013 TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAGAATCAAAATTTTCG
128 TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTCC
12092063 AAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCT
1 AAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCT
12092104 ACACAAAAAC
Statistics
Matches: 197, Mismatches: 17, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
176 41 0.21
177 45 0.23
178 1 0.01
179 1 0.01
180 7 0.04
181 1 0.01
182 95 0.48
183 6 0.03
ACGTcount: A:0.43, C:0.07, G:0.13, T:0.36
Consensus pattern (177 bp):
AAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATACAATTTCAAAAAAGAG
ATTTTTGAGGAAAAGTTGAAAATATCAAATTTCCTTAAAATCAAAGTTTCAAAAAAGATTTTTTT
GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTCC
Found at i:12095918 original size:8 final size:8
Alignment explanation
Indices: 12095905--12095982 Score: 86
Period size: 8 Copynumber: 9.4 Consensus size: 8
12095895 ATGAAAAATG
12095905 AGAAAAGAA
1 AGAAAA-AA
12095914 A-AAAAAA
1 AGAAAAAA
12095921 AGAAAAAA
1 AGAAAAAA
12095929 AGAAAAAA
1 AGAAAAAA
12095937 AGAAAAAA
1 AGAAAAAA
12095945 AGAAAAAAAA
1 AG--AAAAAA
12095955 AGGAAAAAA
1 A-GAAAAAA
* *
12095964 TGAGAAAA
1 AGAAAAAA
*
12095972 TGAAAAAA
1 AGAAAAAA
12095980 AGA
1 AGA
12095983 GATTCAAATT
Statistics
Matches: 61, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
7 3 0.05
8 43 0.70
9 7 0.11
10 7 0.11
11 1 0.02
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (8 bp):
AGAAAAAA
Found at i:12095946 original size:35 final size:35
Alignment explanation
Indices: 12095907--12095982 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
12095897 GAAAAATGAG
12095907 AAAAGAAAAAAAAAAGAAAAAAAGAAAAAAAGAAA
1 AAAAGAAAAAAAAAAGAAAAAAAGAAAAAAAGAAA
* * * *
12095942 AAAAGAAAAAAAAAGGAAAAAATGAGAAAATGAAA
1 AAAAGAAAAAAAAAAGAAAAAAAGAAAAAAAGAAA
12095977 AAAAGA
1 AAAAGA
12095983 GATTCAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (35 bp):
AAAAGAAAAAAAAAAGAAAAAAAGAAAAAAAGAAA
Found at i:12095954 original size:27 final size:27
Alignment explanation
Indices: 12095907--12095980 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
12095897 GAAAAATGAG
12095907 AAAAGAAAAAAA-AAAGAAAAAAAGAAA
1 AAAAGAAAAAAAGAAA-AAAAAAAGAAA
*
12095934 AAAAGAAAAAAAGAAAAAAAAAGGAAA
1 AAAAGAAAAAAAGAAAAAAAAAAGAAA
* * *
12095961 AAATGAGAAAATGAAAAAAA
1 AAAAGAAAAAAAGAAAAAAA
12095981 GAGATTCAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
27 39 0.93
28 3 0.07
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.03
Consensus pattern (27 bp):
AAAAGAAAAAAAGAAAAAAAAAAGAAA
Found at i:12095963 original size:1 final size:1
Alignment explanation
Indices: 12095907--12095955 Score: 53
Period size: 1 Copynumber: 49.0 Consensus size: 1
12095897 GAAAAATGAG
* * * * *
12095907 AAAAGAAAAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
12095956 GGAAAAAATG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (1 bp):
A
Found at i:12097272 original size:42 final size:39
Alignment explanation
Indices: 12097203--12097338 Score: 202
Period size: 42 Copynumber: 3.4 Consensus size: 39
12097193 GTCTAGGAGT
12097203 ATTTACTTTCAAAGTTCGTTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTCAAAGTTCGTTACCTCTGTTTAGAGGAGCA
12097242 ATTTACTTTTCCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTAC-TTT-CAAAGTTCGT--TACCTCTGTTTAGAGGAGCA
*
12097284 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTAC-TTTCAAAGTTCGTTACCTCTGTTTAGAGGAGCA
*
12097324 ATTTACTTCCAAAGT
1 ATTTACTTTCAAAGT
12097339 CGTGGTGCCT
Statistics
Matches: 90, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
39 14 0.16
40 32 0.36
41 10 0.11
42 34 0.38
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.38
Consensus pattern (39 bp):
ATTTACTTTCAAAGTTCGTTACCTCTGTTTAGAGGAGCA
Found at i:12097321 original size:40 final size:40
Alignment explanation
Indices: 12097203--12097331 Score: 208
Period size: 40 Copynumber: 3.2 Consensus size: 40
12097193 GTCTAGGAGT
12097203 ATTTAC-TTTCAAAGTTCGTTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTTCGTTACCTCTGTTTAGAGGAGCA
12097242 ATTTACTTTTCCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CAAAGTTCGT--TACCTCTGTTTAGAGGAGCA
*
12097284 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTTCGTTACCTCTGTTTAGAGGAGCA
12097324 ATTTACTT
1 ATTTACTT
12097332 CCAAAGTCGT
Statistics
Matches: 84, Mismatches: 1, Indels: 9
0.89 0.01 0.10
Matches are distributed among these distances:
39 6 0.07
40 34 0.40
41 10 0.12
42 34 0.40
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.40
Consensus pattern (40 bp):
ATTTACTTTTCAAAGTTCGTTACCTCTGTTTAGAGGAGCA
Found at i:12097515 original size:20 final size:21
Alignment explanation
Indices: 12097477--12097515 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
12097467 CTGTAGACAC
12097477 CCAATTGGGTCCAGGCCCAGA
1 CCAATTGGGTCCAGGCCCAGA
*
12097498 CCAATTGGG-CCTGGCCCA
1 CCAATTGGGTCCAGGCCCA
12097516 AAGGGGGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.36, G:0.28, T:0.15
Consensus pattern (21 bp):
CCAATTGGGTCCAGGCCCAGA
Found at i:12097576 original size:13 final size:14
Alignment explanation
Indices: 12097558--12097587 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
12097548 ATTATTATTA
12097558 TTTTCTTTT-TTCT
1 TTTTCTTTTCTTCT
12097571 TTTTCTTTTCTTCT
1 TTTTCTTTTCTTCT
12097585 TTT
1 TTT
12097588 GTGTTTTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTCTTTTCTTCT
Found at i:12097660 original size:4 final size:4
Alignment explanation
Indices: 12097638--12097674 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
12097628 CATATGTATA
* *
12097638 TATT GATT TATT TAGT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT T
12097675 TGTTAATATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.70
Consensus pattern (4 bp):
TATT
Found at i:12097660 original size:12 final size:12
Alignment explanation
Indices: 12097643--12097679 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
12097633 GTATATATTG
12097643 ATTTATTTAGTT
1 ATTTATTTAGTT
*
12097655 ATTTATTTATTT
1 ATTTATTTAGTT
*
12097667 ATTTATTTTGTT
1 ATTTATTTAGTT
12097679 A
1 A
12097680 ATATTTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.70
Consensus pattern (12 bp):
ATTTATTTAGTT
Found at i:12098168 original size:27 final size:24
Alignment explanation
Indices: 12098125--12098179 Score: 65
Period size: 27 Copynumber: 2.2 Consensus size: 24
12098115 CTGGGAGTGA
*
12098125 GAAAAAATTTTTAGAAATTTTTGG
1 GAAAAAATTTTTAGAAATTTCTGG
*
12098149 CGAAAAAATTTTTCTGGAAATTTCTGG
1 -GAAAAAA-TTTT-TAGAAATTTCTGG
12098176 GAAA
1 GAAA
12098180 TTTTCAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
25 7 0.27
26 8 0.31
27 11 0.42
ACGTcount: A:0.40, C:0.05, G:0.18, T:0.36
Consensus pattern (24 bp):
GAAAAAATTTTTAGAAATTTCTGG
Found at i:12098340 original size:19 final size:20
Alignment explanation
Indices: 12098316--12098358 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
12098306 GGCCAACTTC
*
12098316 CGACGA-AATTTCCAGATTT
1 CGACGATAATTTCCAGAATT
*
12098335 CGACGATATTTTCCAGAATT
1 CGACGATAATTTCCAGAATT
12098355 CGAC
1 CGAC
12098359 ACCGGTGTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.30
Consensus pattern (20 bp):
CGACGATAATTTCCAGAATT
Found at i:12098731 original size:27 final size:26
Alignment explanation
Indices: 12098665--12098733 Score: 66
Period size: 27 Copynumber: 2.5 Consensus size: 26
12098655 TTTTTTTTTG
*
12098665 TTTATTTATTTATTATATTAGGTTTAT
1 TTTATTT-TTTTTTATATTAGGTTTAT
* * * *
12098692 TTAATATTCTTTTTATCTTAGTTTTATT
1 TTTAT-TTTTTTTTATATTAGGTTTA-T
12098720 TTTATTTTTTTTTA
1 TTTATTTTTTTTTA
12098734 CTTTTCTTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
27 26 0.79
28 7 0.21
ACGTcount: A:0.22, C:0.03, G:0.04, T:0.71
Consensus pattern (26 bp):
TTTATTTTTTTTTATATTAGGTTTAT
Found at i:12098733 original size:10 final size:10
Alignment explanation
Indices: 12098713--12098775 Score: 63
Period size: 10 Copynumber: 6.2 Consensus size: 10
12098703 TTTATCTTAG
12098713 TTTTATTTTTA
1 TTTT-TTTTTA
12098724 TTTTTTTTTA
1 TTTTTTTTTA
* *
12098734 CTTTTCTTTA
1 TTTTTTTTTA
*
12098744 TTTTTTATTA
1 TTTTTTTTTA
* *
12098754 TTTATTTATA
1 TTTTTTTTTA
*
12098764 TTTTTTATTA
1 TTTTTTTTTA
12098774 TT
1 TT
12098776 CTATTTTCTT
Statistics
Matches: 41, Mismatches: 11, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
10 37 0.90
11 4 0.10
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:12098765 original size:20 final size:19
Alignment explanation
Indices: 12098714--12098782 Score: 77
Period size: 20 Copynumber: 3.4 Consensus size: 19
12098704 TTATCTTAGT
*
12098714 TTTATTTTTATTTTTTTTTA
1 TTTA-TTTTATTTTTTATTA
12098734 CTTT-TCTTTATTTTTTATTA
1 -TTTAT-TTTATTTTTTATTA
12098754 TTTATTTATATTTTTTATTA
1 TTTATTT-TATTTTTTATTA
12098774 TTCTATTTT
1 TT-TATTTT
12098783 CTTCAAATAA
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
19 6 0.14
20 29 0.67
21 8 0.19
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTATTTTATTTTTTATTA
Found at i:12098880 original size:59 final size:58
Alignment explanation
Indices: 12098790--12099142 Score: 407
Period size: 59 Copynumber: 6.0 Consensus size: 58
12098780 TTTCTTCAAA
12098790 TAAAAATCAAATTTTCCAAAAAAAAATATTTTTAGAGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAATTTT-C--AAAAAAATATTTTTAGAGAAAAGTTGAAAGTATCAATTTTCCT
* * *
12098852 TAGAAATACATTTTCAAAAAAGAGATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTTCAAAAAA-ATATTTTTAGA-GAAAAGTTGAAAGTATCAATTTTCCT
*
12098911 TAAAAATCAAAATTTTC--AAAAATATTTTTAG-GAAAAAGTTGAAAGTATCAATTTTTCT
1 TAAAAAT--AAATTTTCAAAAAAATATTTTTAGAG-AAAAGTTGAAAGTATCAATTTTCCT
* *
12098969 TAAAAATATAA-TTTCAAAAAAAGT-TTTTTTGAGGAAAAATTGAAAGTATCAATTTTCCT
1 TAAAAATA-AATTTTCAAAAAAA-TATTTTTAGA-GAAAAGTTGAAAGTATCAATTTTCCT
* * * *
12099028 TGAGAATTAAAATTTTC-GAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 T-AAAAAT-AAATTTTCAAAAAAATATTTTTAGAGAAAAGTTGAAAGTATCAATTTTCCT
* * *
12099087 TAAGAATAAA-TTTCCAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAATAAATTTTCAAAAAAATATTTTTAGAGAAAAGTTGAAAGTATCAATTTTCC
12099143 CTACACAAAA
Statistics
Matches: 252, Mismatches: 22, Indels: 39
0.81 0.07 0.12
Matches are distributed among these distances:
56 9 0.04
57 44 0.17
58 60 0.24
59 96 0.38
60 19 0.08
61 18 0.07
62 6 0.02
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.36
Consensus pattern (58 bp):
TAAAAATAAATTTTCAAAAAAATATTTTTAGAGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:12098951 original size:117 final size:115
Alignment explanation
Indices: 12098811--12099142 Score: 472
Period size: 117 Copynumber: 2.8 Consensus size: 115
12098801 TTTTCCAAAA
*
12098811 AAAAATATTTTTA-GAGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATACATTTTCAAAAAAGA
1 AAAAATATTTTTAGGA-AAAAGTTGAAAGTATCAATTTTCCTTA-AAATA-AATTTCAAAAAA-A
12098875 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTC-
62 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTCG
*
12098928 AAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATATAATTTCAAAAAAAGT
1 AAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTT-AAAATA-AATTTCAAAAAAAG-
* * * * *
12098993 TTTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTGAGAATTAAAATTTTCG
63 ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTCG
* * *
12099046 AAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAGAATAAATTTCCAAAAAATAT
1 AAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAA-AATAAATTTCAAAAAAAGAT
12099111 TTTTG-GAGAAAAGTTGAAAGTATCAATTTTCC
65 TTTTGAG-GAAAAGTTGAAAGTATCAATTTTCC
12099143 CTACACAAAA
Statistics
Matches: 195, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
115 1 0.01
116 32 0.16
117 115 0.59
118 47 0.24
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (115 bp):
AAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAATTTCAAAAAAAGATT
TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTTCG
Found at i:12099950 original size:44 final size:44
Alignment explanation
Indices: 12099856--12099958 Score: 107
Period size: 44 Copynumber: 2.3 Consensus size: 44
12099846 TGCTGAAATG
* *
12099856 TCTTACAAATCATGCTCGAAAGTCTTTGAGATTACGTCAAGAAA
1 TCTTACAAATAATGCTCGAAAGTCTTTGAGATTACGCCAAGAAA
* * * * * ** *
12099900 TTTTACAAATAATGTTCGAAGGTCTTTTAGATTATGCCCGGAGA
1 TCTTACAAATAATGCTCGAAAGTCTTTGAGATTACGCCAAGAAA
*
12099944 TCTTACAAATCATGC
1 TCTTACAAATAATGC
12099959 CTATCTTTCA
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (44 bp):
TCTTACAAATAATGCTCGAAAGTCTTTGAGATTACGCCAAGAAA
Found at i:12100084 original size:39 final size:39
Alignment explanation
Indices: 12100029--12100152 Score: 126
Period size: 40 Copynumber: 3.2 Consensus size: 39
12100019 ACTCATAAAA
* *
12100029 AAAATCTCATCATGAAAAATTTTTCTTATTTAAGGATTC
1 AAAATCTCATCTTGAAAAATTTTTCTCATTTAAGGATTC
* * * *
12100068 AAAATCTTATCTTGAAAAACTTTTCCTCATTCGAA-GAGTC
1 AAAATCTCATCTTGAAAAA-TTTTTCTCATT-TAAGGATTC
* * * *
12100108 AAATTCTCATCTTG-AATAGTTTTCTCATTTAAGTATTC
1 AAAATCTCATCTTGAAAAATTTTTCTCATTTAAGGATTC
12100146 AAAATCT
1 AAAATCT
12100153 TAAGTTCGAA
Statistics
Matches: 67, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
37 2 0.03
38 18 0.27
39 20 0.30
40 25 0.37
41 2 0.03
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.40
Consensus pattern (39 bp):
AAAATCTCATCTTGAAAAATTTTTCTCATTTAAGGATTC
Found at i:12100493 original size:20 final size:20
Alignment explanation
Indices: 12100468--12100526 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
12100458 CAGGTCCGGG
12100468 CCCGGATCAATTGGGCCTGA
1 CCCGGATCAATTGGGCCTGA
12100488 CCCGGATCAATTGGGCCTGA
1 CCCGGATCAATTGGGCCTGA
* *
12100508 CCCAGATCATTTGGGCCTG
1 CCCGGATCAATTGGGCCTG
12100527 GCCCAAATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.22
Consensus pattern (20 bp):
CCCGGATCAATTGGGCCTGA
Found at i:12100838 original size:10 final size:10
Alignment explanation
Indices: 12100823--12100847 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
12100813 TTATCTAGAT
12100823 TTTTTTTTAA
1 TTTTTTTTAA
12100833 TTTTTTTTAA
1 TTTTTTTTAA
12100843 TTTTT
1 TTTTT
12100848 ATTTTGGAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTTTAA
Found at i:12101325 original size:19 final size:19
Alignment explanation
Indices: 12101301--12101345 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
12101291 TCCGGCCAAT
12101301 TTCCGGCGAAATTCCCAGA
1 TTCCGGCGAAATTCCCAGA
* *
12101320 TTCCGGCGAATTTTCCAGA
1 TTCCGGCGAAATTCCCAGA
*
12101339 ATCCGGC
1 TTCCGGC
12101346 ACCGGCGTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.24
Consensus pattern (19 bp):
TTCCGGCGAAATTCCCAGA
Found at i:12101575 original size:5 final size:5
Alignment explanation
Indices: 12101565--12101607 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
12101555 TTCAGCCCCT
*
12101565 CCGAG CCGAG CCGAG CCGAG CCGAG CCGCA- CCAAG CCGAG CCG
1 CCGAG CCGAG CCGAG CCGAG CCGAG CCG-AG CCGAG CCGAG CCG
12101608 CTCCAGGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 1 0.03
5 32 0.94
6 1 0.03
ACGTcount: A:0.21, C:0.44, G:0.35, T:0.00
Consensus pattern (5 bp):
CCGAG
Found at i:12101576 original size:15 final size:15
Alignment explanation
Indices: 12101558--12101611 Score: 63
Period size: 15 Copynumber: 3.6 Consensus size: 15
12101548 CGCGCGTTTC
*
12101558 AGCCCCTCCGAGCCG
1 AGCCGCTCCGAGCCG
**
12101573 AGCCGAGCCGAGCCG
1 AGCCGCTCCGAGCCG
* *
12101588 AGCCGCACCAAGCCG
1 AGCCGCTCCGAGCCG
12101603 AGCCGCTCC
1 AGCCGCTCC
12101612 AGGTTTTTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.19, C:0.48, G:0.30, T:0.04
Consensus pattern (15 bp):
AGCCGCTCCGAGCCG
Found at i:12102153 original size:156 final size:156
Alignment explanation
Indices: 12101698--12102135 Score: 849
Period size: 156 Copynumber: 2.8 Consensus size: 156
12101688 TTTTTCTTTA
*
12101698 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCCTGCATACTCCTG
1 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
12101763 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
66 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
12101828 ATTAATTAATTGGTTGATCTTGATTT
131 ATTAATTAATTGGTTGATCTTGATTT
12101854 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
1 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
12101919 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
66 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
12101984 ATTAATTAATTGGTTGATCTTGATTT
131 ATTAATTAATTGGTTGATCTTGATTT
* *
12102010 TTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCTTG
1 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
12102075 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTC
66 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTC
12102136 AACAACTAAC
Statistics
Matches: 279, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
156 279 1.00
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (156 bp):
TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
ATTAATTAATTGGTTGATCTTGATTT
Found at i:12105811 original size:7 final size:7
Alignment explanation
Indices: 12105794--12105865 Score: 62
Period size: 7 Copynumber: 10.3 Consensus size: 7
12105784 AAAAGATGAT
12105794 GAAAAAA
1 GAAAAAA
12105801 -AAAAAA
1 GAAAAAA
12105807 GAAAAAA
1 GAAAAAA
12105814 G---AAA
1 GAAAAAA
*
12105818 GAAAGAA
1 GAAAAAA
12105825 GAAAAAA
1 GAAAAAA
*
12105832 TGAGAAAAT
1 -GA-AAAAA
12105841 GAAAAAA
1 GAAAAAA
12105848 TGAAAAAA
1 -GAAAAAA
12105856 TGAAAAAA
1 -GAAAAAA
12105864 GA
1 GA
12105866 GATCCAAATT
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
4 4 0.07
6 6 0.11
7 21 0.39
8 19 0.35
9 4 0.07
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.06
Consensus pattern (7 bp):
GAAAAAA
Found at i:12105811 original size:8 final size:8
Alignment explanation
Indices: 12105795--12105863 Score: 52
Period size: 8 Copynumber: 8.5 Consensus size: 8
12105785 AAAGATGATG
12105795 AAAAA-AA
1 AAAAAGAA
12105802 AAAAAG-A
1 AAAAAGAA
12105809 AAAAAGAAA
1 AAAAAG-AA
12105818 GAAAGAAGAA
1 -AAA-AAGAA
* *
12105828 AAAATGAG
1 AAAAAGAA
*
12105836 AAAATGAA
1 AAAAAGAA
*
12105844 AAAATGAA
1 AAAAAGAA
*
12105852 AAAATGAA
1 AAAAAGAA
12105860 AAAA
1 AAAA
12105864 GAGATCCAAA
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
7 12 0.22
8 30 0.56
9 4 0.07
10 5 0.09
11 3 0.06
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.06
Consensus pattern (8 bp):
AAAAAGAA
Found at i:12105844 original size:16 final size:16
Alignment explanation
Indices: 12105825--12105867 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
12105815 AAAGAAAGAA
12105825 GAAAAAATGAGAAAAT
1 GAAAAAATGAGAAAAT
*
12105841 GAAAAAATGAAAAAAT
1 GAAAAAATGAGAAAAT
12105857 GAAAAAA-GAGA
1 GAAAAAATGAGA
12105868 TCCAAATTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 3 0.12
16 22 0.88
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.09
Consensus pattern (16 bp):
GAAAAAATGAGAAAAT
Found at i:12105865 original size:42 final size:43
Alignment explanation
Indices: 12105771--12105865 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 43
12105761 ATAATAGGTG
*
12105771 AAGAATGAAA-AA-AAAAAGATGATGAAAAAAAAAAAAGAAAA
1 AAGAAAGAAAGAAGAAAAAGATGATGAAAAAAAAAAAAGAAAA
* *
12105812 AAGAAAGAAAGAAGAAAAA-ATGA-GAAAATGAAAAAATGAAAA
1 AAGAAAGAAAGAAGAAAAAGATGATGAAAA-AAAAAAAAGAAAA
12105854 AATGAAA-AAAGA
1 AA-GAAAGAAAGA
12105866 GATCCAAATT
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
41 14 0.30
42 24 0.51
43 9 0.19
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (43 bp):
AAGAAAGAAAGAAGAAAAAGATGATGAAAAAAAAAAAAGAAAA
Found at i:12107305 original size:124 final size:122
Alignment explanation
Indices: 12107047--12107474 Score: 616
Period size: 124 Copynumber: 3.5 Consensus size: 122
12107037 GTCTAGGAGT
*
12107047 ATTTA-CTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG-TCGTGGT
1 ATTTATCTTTCCAAAG-TCCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGT--T
* *
12107110 GCCTCTGTTGAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCA
63 GCCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
12107171 ATTTA-CTTTCCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCCGTTG
1 ATTTATCTTTCCAAAG-TCCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTT-CGTTG
* **
12107235 CCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTATCTCTGTTTAGAGGAGCA
64 CCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
* * *
12107294 ATTTATTTTTCCAAAGTCGTGGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTTCGTTG
1 ATTTATCTTTCCAAAGTC--CGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTG
*
12107359 CCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTTCGT--TGCCTCTGTTTAGATGAGCA
64 CCTCTGTTTAGAGGAGCAATTTATTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCA
*
12107417 ATTTATCTTTCCAAAGT-CGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 ATTTATCTTTCCAAAGTCCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
12107475 CGTAGAGCCT
Statistics
Matches: 279, Mismatches: 17, Indels: 18
0.89 0.05 0.06
Matches are distributed among these distances:
120 2 0.01
122 34 0.12
123 72 0.26
124 125 0.45
125 43 0.15
126 3 0.01
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (122 bp):
ATTTATCTTTCCAAAGTCCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCC
TCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
Found at i:12107360 original size:165 final size:165
Alignment explanation
Indices: 12107047--12107498 Score: 741
Period size: 165 Copynumber: 2.7 Consensus size: 165
12107037 GTCTAGGAGT
*
12107047 ATTTACTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGC
1 ATTTACTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGC
* *
12107112 CTCTGTTGAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTAC
66 CTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTAC
12107177 TTTCCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCA
131 TTTCCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCA
**
12107212 ATTTACTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTAT
1 ATTTACTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGC
*
12107277 CTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTTGCCTCTGTTTAGAGGAGCAATTTA
66 CTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGG-TGCCTCTGTTGAGAGGAGCAATTTA
12107342 CTTTCCAAAGTT-CGTTGCCTCTGTTTAGAGGAGCA
130 CTTTCCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCA
* *
12107377 ATTTA-TTTTCCAAAGTT-CGTTGCCTCTGTTTAGATGAGCAATTTATCTTTCCAAAGTCGTGGT
1 ATTTACTTTT-CAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTAT-TTTTCAAAGTCGTGGT
* * **
12107440 GCCTCTGTTTAGAGGAGCAATTTATTTTT-CAAAGTCGTAGAGCCTCTGTCAAGAGGAGC
64 GCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGC
12107499 TAAAAAAAAA
Statistics
Matches: 270, Mismatches: 14, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
163 16 0.06
164 42 0.16
165 176 0.65
166 36 0.13
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (165 bp):
ATTTACTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGC
CTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTAC
TTTCCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCA
Found at i:12107485 original size:41 final size:41
Alignment explanation
Indices: 12107068--12107498 Score: 567
Period size: 41 Copynumber: 10.5 Consensus size: 41
12107058 AAAGTTCCGT
12107068 TGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAAGTCGTGG
*
12107109 TGCCTCTGTTGAGAGGAGCAATTTACTTTTCCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAAGTCGTGG
* *
12107151 TGCCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTTCCGT--
1 TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAG-T-CGTGG
12107192 TGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTTCCGT--
1 TGCCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAAG-T-CGTGG
*
12107233 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGG
**
12107274 TATCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTA-TTTTCCAAAGTCGTGG
*
12107316 TTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTTCGT--
1 -TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAG-TCGTGG
12107357 TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTTCGT--
1 TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAG-TCGTGG
*
12107397 TGCCTCTGTTTAGATGAGCAATTTATCTTTCCAAAGTCGTGG
1 TGCCTCTGTTTAGAGGAGCAATTTAT-TTTCCAAAGTCGTGG
* *
12107439 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTAG
1 TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGG
* **
12107480 AGCCTCTGTCAAGAGGAGC
1 TGCCTCTGTTTAGAGGAGC
12107499 TAAAAAAAAA
Statistics
Matches: 359, Mismatches: 18, Indels: 26
0.89 0.04 0.06
Matches are distributed among these distances:
39 3 0.01
40 73 0.20
41 164 0.46
42 89 0.25
43 30 0.08
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.37
Consensus pattern (41 bp):
TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTGG
Found at i:12107497 original size:206 final size:206
Alignment explanation
Indices: 12107069--12107498 Score: 658
Period size: 206 Copynumber: 2.1 Consensus size: 206
12107059 AAGTTCCGTT
12107069 GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTA
1 GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTA
12107134 CTTTTCCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTTCCGTTGCCTCT
66 CTTTTCCAAAGTCGT-GTGCCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTTCCGTTGCCTCT
*
12107199 GTTTAGAGGAGCAATTTACTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTC
130 GTTTAGAGGAGCAATTTACTTTCCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTC
*
12107264 AAAGTCGTGGTA
195 AAAGTCGTAGTA
* * *
12107276 -TCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTTGCCTCTGTTTAGAGGAGCAATT
1 GCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTCGTGG-TGCCTCTGTTGAGAGGAGCAATT
* *
12107340 TAC-TTTCCAAAGTTCGT-TGCCTCTGTTTAGAGGAGCAATTTATTTTCCAAAGTT-CGTTGCCT
64 TACTTTTCCAAAG-TCGTGTGCCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTTCCGTTGCCT
*
12107402 CTGTTTAGATGAGCAATTTATCTTTCCAAAG-T-CGTGGTGCCTCTGTTTAGAGGAGCAATTTAT
128 CTGTTTAGAGGAGCAATTTA-CTTTCCAAAGTTCCGT--TGCCTCTGTTTAGAGGAGCAATTTAT
12107465 TTTTCAAAGTCGTAG-A
190 TTTTCAAAGTCGTAGTA
**
12107481 GCCTCTGTCAAGAGGAGC
1 GCCTCTGTTTAGAGGAGC
12107499 TAAAAAAAAA
Statistics
Matches: 205, Mismatches: 11, Indels: 15
0.89 0.05 0.06
Matches are distributed among these distances:
204 3 0.01
205 29 0.14
206 124 0.60
207 20 0.10
208 29 0.14
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.37
Consensus pattern (206 bp):
GCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTGAGAGGAGCAATTTA
CTTTTCCAAAGTCGTGTGCCTCTGTTGAGAGGAGCAATTTACTTTCCAAAGTTCCGTTGCCTCTG
TTTAGAGGAGCAATTTACTTTCCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCA
AAGTCGTAGTA
Found at i:12107649 original size:20 final size:20
Alignment explanation
Indices: 12107624--12107682 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
12107614 CAGGTCCGGG
12107624 CCCGGATCAATTGGGCCTGA
1 CCCGGATCAATTGGGCCTGA
12107644 CCCGGATCAATTGGGCCTGA
1 CCCGGATCAATTGGGCCTGA
* *
12107664 CCCAGATCATTTGGGCCTG
1 CCCGGATCAATTGGGCCTG
12107683 GCCCAAATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.22
Consensus pattern (20 bp):
CCCGGATCAATTGGGCCTGA
Found at i:12107999 original size:12 final size:12
Alignment explanation
Indices: 12107972--12108004 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
12107962 AATTATCTAG
12107972 ATTTTT-TTTTA
1 ATTTTTATTTTA
12107983 A-TTTTATTTTA
1 ATTTTTATTTTA
12107994 ATTTTTATTTT
1 ATTTTTATTTT
12108005 GGAGGGCTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 4 0.20
11 7 0.35
12 9 0.45
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
ATTTTTATTTTA
Found at i:12108390 original size:31 final size:31
Alignment explanation
Indices: 12108319--12108391 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 31
12108309 AATTTTCAGA
* *
12108319 TTCCGGCGAAAATTCCGGCGACTTTTGAATT
1 TTCCGGCGACAATTCCGGCGACTTTTGAAGT
*
12108350 TTTCGGCGACAATTCCGGCGAAC-TTTGAAGT
1 TTCCGGCGACAATTCCGGCG-ACTTTTGAAGT
12108381 TTCCGGCGACA
1 TTCCGGCGACA
12108392 GACCCAGTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
31 35 0.95
32 2 0.05
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.29
Consensus pattern (31 bp):
TTCCGGCGACAATTCCGGCGACTTTTGAAGT
Found at i:12108477 original size:19 final size:19
Alignment explanation
Indices: 12108453--12108495 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
12108443 TCCGGCCAAT
12108453 TTCCGGCGAAATTCCCAGA
1 TTCCGGCGAAATTCCCAGA
* *
12108472 TTCCGGCGAATTTTCCAGA
1 TTCCGGCGAAATTCCCAGA
*
12108491 ATCCG
1 TTCCG
12108496 ACACCGGCGT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (19 bp):
TTCCGGCGAAATTCCCAGA
Found at i:12108727 original size:5 final size:5
Alignment explanation
Indices: 12108717--12108754 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
12108707 TTCAGCCCCT
*
12108717 CCGAG CCGAG CCGAG CCGAG CCGCA- CCAAG CCGAG CCG
1 CCGAG CCGAG CCGAG CCGAG CCG-AG CCGAG CCGAG CCG
12108755 CGATCCGAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 1 0.03
5 27 0.93
6 1 0.03
ACGTcount: A:0.21, C:0.45, G:0.34, T:0.00
Consensus pattern (5 bp):
CCGAG
Found at i:12108810 original size:16 final size:16
Alignment explanation
Indices: 12108775--12108821 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
12108765 CGCTCCAGGT
***
12108775 TTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTGAA
12108791 TTTTTTTTTTTTTGAA
1 TTTTTTTTTTTTTGAA
*
12108807 TTTTTTTTTATTTGA
1 TTTTTTTTTTTTTGA
12108822 CTTTGATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.09, C:0.00, G:0.04, T:0.87
Consensus pattern (16 bp):
TTTTTTTTTTTTTGAA
Found at i:12108815 original size:1 final size:1
Alignment explanation
Indices: 12108774--12108803 Score: 60
Period size: 1 Copynumber: 30.0 Consensus size: 1
12108764 CCGCTCCAGG
12108774 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
12108804 GAATTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:12108819 original size:10 final size:10
Alignment explanation
Indices: 12108775--12108819 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
12108765 CGCTCCAGGT
*
12108775 TTTTTTTTTT
1 TTTTTTTTTA
*
12108785 TTTTTTTTTT
1 TTTTTTTTTA
12108795 TTTTTTTTTGAA
1 TTTTTTTTT--A
12108807 TTTTTTTTTA
1 TTTTTTTTTA
12108817 TTT
1 TTT
12108820 GACTTTGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
10 23 0.72
12 9 0.28
ACGTcount: A:0.07, C:0.00, G:0.02, T:0.91
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:12109190 original size:156 final size:156
Alignment explanation
Indices: 12108853--12109290 Score: 824
Period size: 156 Copynumber: 2.8 Consensus size: 156
12108843 TTTTTCTTTA
*
12108853 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAATAGTAGTTTTTCTTGCATACTCCTG
1 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
12108918 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
66 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
12108983 ATTAATTAATTGGTTGATCTTGATTT
131 ATTAATTAATTGGTTGATCTTGATTT
*
12109009 TTTTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
1 TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
12109074 AGGTGAGGGAATTTTCTCAATTTTCTGCT-AAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
66 AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
12109138 ATTAATTAATTGGTTGATCTTGATTT
131 ATTAATTAATTGGTTGATCTTGATTT
* *
12109164 TTCTTTAAATAATCCGACGACGGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCTT
1 TTCTTTAATTAATCCGACGAC-GGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCT
12109229 GAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTC
65 GAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTC
12109291 AACAACTAAC
Statistics
Matches: 275, Mismatches: 5, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
155 80 0.29
156 164 0.60
157 31 0.11
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (156 bp):
TTCTTTAATTAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTCCTG
AGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTTCGATA
ATTAATTAATTGGTTGATCTTGATTT
Found at i:12111045 original size:25 final size:25
Alignment explanation
Indices: 12111017--12111064 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
12111007 ATTCATTTTA
12111017 ACCAAATTCT-ACTTGAAGTAGGATT
1 ACCAAATT-TAACTTGAAGTAGGATT
12111042 ACCAAATTTAACTTGAAGTAGGA
1 ACCAAATTTAACTTGAAGTAGGA
12111065 ACTATGATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.29
Consensus pattern (25 bp):
ACCAAATTTAACTTGAAGTAGGATT
Found at i:12111643 original size:16 final size:16
Alignment explanation
Indices: 12111624--12111654 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
12111614 CAATTTTCTA
12111624 TAGTTTCTTTATATTT
1 TAGTTTCTTTATATTT
*
12111640 TAGTTTCTTTGTATT
1 TAGTTTCTTTATATT
12111655 AGGCTAAGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.06, G:0.10, T:0.68
Consensus pattern (16 bp):
TAGTTTCTTTATATTT
Found at i:12115414 original size:15 final size:15
Alignment explanation
Indices: 12115381--12115438 Score: 55
Period size: 16 Copynumber: 3.8 Consensus size: 15
12115371 ACATGTTAAG
* *
12115381 TTTTTTTTTTTTTTCA
1 TTTTTCTTTTTATT-A
*
12115397 TTTTTCTATTTATTA
1 TTTTTCTTTTTATTA
*
12115412 TTTTT-TTTTTCATTT
1 TTTTTCTTTTT-ATTA
12115427 TTTTTCTTTTTA
1 TTTTTCTTTTTA
12115439 AGTATTTATA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
14 4 0.11
15 15 0.43
16 16 0.46
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTCTTTTTATTA
Found at i:12115638 original size:14 final size:14
Alignment explanation
Indices: 12115613--12115651 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
12115603 TCCTTTATAT
*
12115613 ATTTTTTACTTTTTC
1 ATTTTTT-CTTTTTA
*
12115628 GTTTTTTCTTTTTA
1 ATTTTTTCTTTTTA
12115642 ATTTTTTCTT
1 ATTTTTTCTT
12115652 CATTTGTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.10, C:0.10, G:0.03, T:0.77
Consensus pattern (14 bp):
ATTTTTTCTTTTTA
Found at i:12116046 original size:12 final size:13
Alignment explanation
Indices: 12116031--12116059 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
12116021 TATACCAATA
12116031 AATATATT-ATTT
1 AATATATTAATTT
12116043 AATATATTAATTT
1 AATATATTAATTT
12116056 AATA
1 AATA
12116060 AAAATACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
AATATATTAATTT
Found at i:12116241 original size:9 final size:9
Alignment explanation
Indices: 12116227--12116257 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
12116217 CAATTTTTTG
12116227 TTTTTAAAT
1 TTTTTAAAT
12116236 TTTTTAAAT
1 TTTTTAAAT
12116245 TTTTATAAAT
1 TTTT-TAAAT
12116255 TTT
1 TTT
12116258 GTGAAAGACG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.62
10 8 0.38
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTTAAAT
Found at i:12116752 original size:2 final size:2
Alignment explanation
Indices: 12116747--12116779 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
12116737 TATATAGAAG
12116747 TA TA TA T- TA TA T- TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12116780 GAATGTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 27 0.93
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (2 bp):
TA
Found at i:12116911 original size:25 final size:25
Alignment explanation
Indices: 12116883--12116930 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
12116873 GTTTTTTTTT
12116883 TAATTTTTAAATTTTCTC-TTTTTCA
1 TAATTTTT-AATTTTCTCGTTTTTCA
*
12116908 TAATTTTTAATTTTTTCGTTTTT
1 TAATTTTTAATTTTCTCGTTTTT
12116931 TGGTATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.69
Consensus pattern (25 bp):
TAATTTTTAATTTTCTCGTTTTTCA
Found at i:12117275 original size:2 final size:2
Alignment explanation
Indices: 12117268--12117302 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
12117258 CCTGCCAAAT
*
12117268 TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12117303 CAAATTAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:12118732 original size:27 final size:27
Alignment explanation
Indices: 12118701--12118771 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
12118691 TTCTTTACCC
*
12118701 TTGACTTTGTCATTTTTCTTGAGAGAG
1 TTGACTTTGTAATTTTTCTTGAGAGAG
* ** *
12118728 TTGACTTTATAATCATTGTTGAGAGAG
1 TTGACTTTGTAATTTTTCTTGAGAGAG
12118755 TTGACTTTGTAATTTTT
1 TTGACTTTGTAATTTTT
12118772 ATTAAACAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.23, C:0.08, G:0.20, T:0.49
Consensus pattern (27 bp):
TTGACTTTGTAATTTTTCTTGAGAGAG
Found at i:12128297 original size:18 final size:18
Alignment explanation
Indices: 12128274--12128308 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12128264 TTTAAGTAAT
* *
12128274 TTTTTATTAACATATATA
1 TTTTTAATAAAATATATA
12128292 TTTTTAATAAAATATAT
1 TTTTTAATAAAATATAT
12128309 TAATTCTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
TTTTTAATAAAATATATA
Found at i:12129579 original size:3 final size:3
Alignment explanation
Indices: 12129376--12129560 Score: 75
Period size: 3 Copynumber: 64.3 Consensus size: 3
12129366 GATAACAATA
* * *
12129376 TAT TAT TAT TAT TAT TAT TAT TAA TAT TAT TA- TAT CA- TAT TAT ATAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT
* * * * * * *
12129423 TAT AAT ATAT TA- CAT CA- TAT TAG TAC TAT TA- TAT TTT TAT CAT
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * *
12129466 TAT TAG TA- TAC CA- TAT CA- TAT TAC TAT TA- TAT TAC TAT TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * *
12129510 TAC TGT TAC TAT TAC TAC TAC TAT TAT TAT TAT TAT TAT TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
12129557 TAT T
1 TAT T
12129561 TCTTCTTTCC
Statistics
Matches: 134, Mismatches: 36, Indels: 24
0.69 0.19 0.12
Matches are distributed among these distances:
2 15 0.11
3 115 0.86
4 4 0.03
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.54
Consensus pattern (3 bp):
TAT
Found at i:12132489 original size:19 final size:20
Alignment explanation
Indices: 12132465--12132502 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
12132455 TGCAAGTCTA
*
12132465 AGAAAGAG-AGAAACAAACG
1 AGAAAGAGAAAAAACAAACG
12132484 AGAAAGAGAAAAAACAAAC
1 AGAAAGAGAAAAAACAAAC
12132503 AGGGAAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.68, C:0.11, G:0.21, T:0.00
Consensus pattern (20 bp):
AGAAAGAGAAAAAACAAACG
Found at i:12132623 original size:58 final size:58
Alignment explanation
Indices: 12132555--12132810 Score: 355
Period size: 58 Copynumber: 4.4 Consensus size: 58
12132545 AAATGCTTTA
12132555 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCTAAAAAATATTTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCTAAAAAATATTTTTG
* *
12132613 AGGAAAAGTTGAAAGTCTCAATTTTCCTTGAAAATAAGCTTTCTAAAATATATTTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCTAAAAAATATTTTTG
* *
12132671 -GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAG-TTT-TCAAAAATGGATTTTTG
1 AGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCTAAAAAAT--ATTTTTG
* *
12132729 AGGAAAAGTTGAAAGTATCAATTTTCC-TCAAAATTAAAAC-TTCTAAAAAATA-TTTTG
1 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAA-T-AAGCTTTCTAAAAAATATTTTTG
12132786 -GGAAAAAGTTGAAAGTATCAATTTT
1 AGG-AAAAGTTGAAAGTATCAATTTT
12132811 TTCTGTACAA
Statistics
Matches: 180, Mismatches: 9, Indels: 19
0.87 0.04 0.09
Matches are distributed among these distances:
56 8 0.04
57 37 0.21
58 122 0.68
59 6 0.03
60 7 0.04
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.36
Consensus pattern (58 bp):
AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCTAAAAAATATTTTTG
Found at i:12134575 original size:41 final size:39
Alignment explanation
Indices: 12134519--12134602 Score: 114
Period size: 41 Copynumber: 2.1 Consensus size: 39
12134509 TTTGAGATTA
* * *
12134519 TTTTTCATTGCTTATACTTGCTTAATTATTTATTTTTATTT
1 TTTTTCATTGCTTATACCTACTTAATTATTCA--TTTATTT
*
12134560 TTTTTCATTGTTTATACCTACTTAATTATTCATTTATTT
1 TTTTTCATTGCTTATACCTACTTAATTATTCATTTATTT
12134599 TTTT
1 TTTT
12134603 CTCTATTTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
39 11 0.28
41 28 0.72
ACGTcount: A:0.20, C:0.11, G:0.04, T:0.65
Consensus pattern (39 bp):
TTTTTCATTGCTTATACCTACTTAATTATTCATTTATTT
Found at i:12135080 original size:15 final size:14
Alignment explanation
Indices: 12135047--12135077 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
12135037 AACTAACTAA
*
12135047 TTTATTTGTCTTCT
1 TTTATTTCTCTTCT
12135061 TTTATTTCTCTTCT
1 TTTATTTCTCTTCT
12135075 TTT
1 TTT
12135078 TATGCATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.06, C:0.16, G:0.03, T:0.74
Consensus pattern (14 bp):
TTTATTTCTCTTCT
Found at i:12144109 original size:56 final size:54
Alignment explanation
Indices: 12144031--12144135 Score: 147
Period size: 56 Copynumber: 1.9 Consensus size: 54
12144021 CAACGACAGC
* * * **
12144031 AAAAAAAAAAAAAAGAGCTCAAGTTGAAAACCTAAAAGGGTGGCTTGAACAAAA
1 AAAAAAAAAAAAAAGAGATCAAGTTAAAAACCCAAAAGGGCAGCTTGAACAAAA
12144085 AAAAAAAAAGAGAAAAGAGATCAAGTTAAAAACCCAAAAGGGCAGCTTGAA
1 AAAAAAAAA-A-AAAAGAGATCAAGTTAAAAACCCAAAAGGGCAGCTTGAA
12144136 TTGAATAAGG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 9 0.20
55 1 0.02
56 34 0.77
ACGTcount: A:0.58, C:0.11, G:0.19, T:0.11
Consensus pattern (54 bp):
AAAAAAAAAAAAAAGAGATCAAGTTAAAAACCCAAAAGGGCAGCTTGAACAAAA
Found at i:12145013 original size:114 final size:114
Alignment explanation
Indices: 12144763--12145023 Score: 317
Period size: 114 Copynumber: 2.3 Consensus size: 114
12144753 CACAGGTTTC
* * * * * * *
12144763 GATCTTGGCTCAGGTCAGATCATTTGCAGACTTGCGGCATTATCTTGGTTATTCATCTACAACTT
1 GATCTTGGTTCAAGTCAGATCATTTTCAGACTTGCGGCATTATCCTAGTCATTCATCTACAACCT
* * * *
12144828 TGACTCGGTCTTGGTCACTTTCAGACTTGCGACATCGTCTCAATCATCT
66 TAACTCAGTCTTGGTCACTTTCAAACTTGCAACATCGTCTCAATCATCT
* * * * * *
12144877 GATCTTGATTC-AGACTAGATCATTTTTATACTTGTGGCATTATCCTAGTCATTCATCTACGACC
1 GATCTTGGTTCAAGTC-AGATCATTTTCAGACTTGCGGCATTATCCTAGTCATTCATCTACAACC
* * *
12144941 TTAACTCAGTTTTGGTCATTTTCAAACTTGCAACATCGTCTCAATCATTT
65 TTAACTCAGTCTTGGTCACTTTCAAACTTGCAACATCGTCTCAATCATCT
*
12144991 GATCTTGGTTCAAGTCAAATCATTTTCAGACTT
1 GATCTTGGTTCAAGTCAGATCATTTTCAGACTT
12145024 ACGGTATCGT
Statistics
Matches: 120, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
113 2 0.02
114 115 0.96
115 3 0.03
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (114 bp):
GATCTTGGTTCAAGTCAGATCATTTTCAGACTTGCGGCATTATCCTAGTCATTCATCTACAACCT
TAACTCAGTCTTGGTCACTTTCAAACTTGCAACATCGTCTCAATCATCT
Found at i:12145043 original size:114 final size:114
Alignment explanation
Indices: 12144781--12145076 Score: 283
Period size: 114 Copynumber: 2.6 Consensus size: 114
12144771 CTCAGGTCAG
* * * * ** * * * * *
12144781 ATCATTTGCAGACTTGCGGCATTATCTTGGTTATTCATCTACAACTTTGACTCGGTCTTGGTCAC
1 ATCATTTTCAGACTTACGGCATCATCCTAATCATTCATCTACGACCTTGACTCAGTCTTGGTCAT
* * *
12144846 TTTCAGACTTGCGACATCGTCTCAATCATCTGATCTTGATTCAGACTAG
66 TTTCAAACTTGCAACATCGTCTCAATCATCTGATCTTGATTCAGACTAA
* * ** * * * *
12144895 ATCATTTTTATACTTGTGGCATTATCCTAGTCATTCATCTACGACCTTAACTCAGTTTTGGTCAT
1 ATCATTTTCAGACTTACGGCATCATCCTAATCATTCATCTACGACCTTGACTCAGTCTTGGTCAT
* * *
12144960 TTTCAAACTTGCAACATCGTCTCAATCATTTGATCTTGGTTCA-AGTCAA
66 TTTCAAACTTGCAACATCGTCTCAATCATCTGATCTTGATTCAGACT-AA
* * * *
12145009 ATCATTTTCAGACTTACGGTATCGT-CTCAATCATTCATCTATGACCCTGACTCCA-TCTTGGTC
1 ATCATTTTCAGACTTACGGCATCATCCT-AATCATTCATCTACGACCTTGACT-CAGTCTTGGTC
12145072 ATTTT
64 ATTTT
12145077 TAGACTCATG
Statistics
Matches: 148, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
113 4 0.03
114 142 0.96
115 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.39
Consensus pattern (114 bp):
ATCATTTTCAGACTTACGGCATCATCCTAATCATTCATCTACGACCTTGACTCAGTCTTGGTCAT
TTTCAAACTTGCAACATCGTCTCAATCATCTGATCTTGATTCAGACTAA
Found at i:12145500 original size:3 final size:3
Alignment explanation
Indices: 12145486--12145516 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
12145476 TACCATATCA
*
12145486 TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
12145517 TGTCATAACG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:12146447 original size:59 final size:59
Alignment explanation
Indices: 12145988--12146447 Score: 405
Period size: 59 Copynumber: 7.7 Consensus size: 59
12145978 TTTGTACAAG
* * * *
12145988 GGAAAATTGATACTTTCAACTTCTCC-CCAAAATA-TTTTTTCGAAACTTTAATTTTGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTAATTTTGA
* * * * *
12146045 GGAAAATTGATACTTGCAACTTTTTCTCAAAAATA-TTTTTTGGAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTAATTTTGA
* * ** *
12146103 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAAACCTTTTTTGAAAATTT-ATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTAATT-TTGA
* * *
12146162 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATATATTTTTTG-AATTCTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTT-CCTCAAAA-ATAT-T-TTTTTTGAAAAT-TTAATTTTGA
* * * * * *** * *
12146225 GGAAAATTGATATTTTTAACTTTTTCTAAAAAAAAAAAACCTTTTTGAAGATTT-ATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCT---CAAAAATATTTTTTTTGAAAATTTAATT-TTGA
* * ** *
12146287 AGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTGGAATTTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTGAAAATTTAATTTTGA
* * * ** *
12146346 GAAAAATTGATACTTTCAACTTTTCCTAAAAAAAACCTTTTTTGAAAATTT-ATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTAATT-TTGA
*
12146405 GGAAAATTGATACTTTTAACTTTTCCTCAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTT
12146448 TAATTTTATT
Statistics
Matches: 320, Mismatches: 65, Indels: 34
0.76 0.16 0.08
Matches are distributed among these distances:
57 23 0.07
58 65 0.20
59 135 0.42
60 10 0.03
61 5 0.02
62 37 0.12
63 35 0.11
64 5 0.02
65 5 0.02
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.43
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTAATTTTGA
Found at i:12146481 original size:9 final size:9
Alignment explanation
Indices: 12146464--12146590 Score: 59
Period size: 9 Copynumber: 13.4 Consensus size: 9
12146454 TATTTAAAGA
*
12146464 AAATGAAAT
1 AAATAAAAT
12146473 AAATAAAAT
1 AAATAAAAT
12146482 AAATAAAAT
1 AAATAAAAT
12146491 GAAA-ATAAAT
1 -AAATA-AAAT
*
12146501 AAAAAAAATT
1 AAATAAAA-T
*
12146511 AAACAACCCTAAT
1 AAATAA----AAT
12146524 ATAATAATAAT
1 A-AATAA-AAT
12146535 AAAT-AAAT
1 AAATAAAAT
*
12146543 AAATAAAAC
1 AAATAAAAT
*
12146552 AAAAAATAAT
1 AAATAA-AAT
12146562 AAA-AATAAT
1 AAATAA-AAT
12146571 AAA-AAAAT
1 AAATAAAAT
12146579 GAAA-AAAA-
1 -AAATAAAAT
12146587 AAAT
1 AAAT
12146591 CTGGAGCGGC
Statistics
Matches: 99, Mismatches: 6, Indels: 27
0.75 0.05 0.20
Matches are distributed among these distances:
7 3 0.03
8 10 0.10
9 51 0.52
10 22 0.22
11 5 0.05
13 2 0.02
14 6 0.06
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (9 bp):
AAATAAAAT
Found at i:12146501 original size:24 final size:23
Alignment explanation
Indices: 12146458--12146509 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 23
12146448 TAATTTTATT
*
12146458 TAAAGAAAATGAAATAAATAAAA
1 TAAATAAAATGAAATAAATAAAA
12146481 TAAATAAAATGAAAATAAATAAAA
1 TAAATAAAATG-AAATAAATAAAA
*
12146505 AAAAT
1 TAAAT
12146510 TAAACAACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 10 0.38
24 16 0.62
ACGTcount: A:0.75, C:0.00, G:0.06, T:0.19
Consensus pattern (23 bp):
TAAATAAAATGAAATAAATAAAA
Found at i:12146558 original size:12 final size:11
Alignment explanation
Indices: 12146532--12146590 Score: 50
Period size: 12 Copynumber: 5.3 Consensus size: 11
12146522 ATATAATAAT
*
12146532 AATAAATAAATA
1 AATAAA-AAAAA
12146544 AATAAAACAAAA
1 AATAAAA-AAAA
*
12146556 AAT--AATAAA
1 AATAAAAAAAA
*
12146565 AATAATAAAAA
1 AATAAAAAAAA
12146576 AATGAAAAAAAA
1 AAT-AAAAAAAA
12146588 AAT
1 AAT
12146591 CTGGAGCGGC
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
9 6 0.16
10 2 0.05
11 8 0.21
12 22 0.58
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.17
Consensus pattern (11 bp):
AATAAAAAAAA
Found at i:12146569 original size:33 final size:34
Alignment explanation
Indices: 12146524--12146590 Score: 79
Period size: 32 Copynumber: 2.1 Consensus size: 34
12146514 CAACCCTAAT
* *
12146524 ATAATAATAATAAAT-AAATAAATAAAACAAAAA
1 ATAATAAAAATAAATAAAAAAAATAAAACAAAAA
12146557 ATAATAAAAAT-AAT-AAAAAAATGAAAA-AAAAA
1 ATAATAAAAATAAATAAAAAAAAT-AAAACAAAAA
12146589 AT
1 AT
12146591 CTGGAGCGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
32 17 0.55
33 14 0.45
ACGTcount: A:0.78, C:0.01, G:0.01, T:0.19
Consensus pattern (34 bp):
ATAATAAAAATAAATAAAAAAAATAAAACAAAAA
Found at i:12147542 original size:4 final size:4
Alignment explanation
Indices: 12147521--12147583 Score: 69
Period size: 4 Copynumber: 16.2 Consensus size: 4
12147511 TAACAGTAAT
* * *
12147521 AATA GATA AAT- AAT- AATA AATA TATA AA-A GATAA AATA AATA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AAT-A AATA AATA AATA
12147567 AATA AATA AATA AATA A
1 AATA AATA AATA AATA A
12147584 GGAAAAAAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
3 8 0.16
4 39 0.78
5 3 0.06
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.25
Consensus pattern (4 bp):
AATA
Found at i:12147640 original size:13 final size:13
Alignment explanation
Indices: 12147622--12147662 Score: 57
Period size: 13 Copynumber: 3.1 Consensus size: 13
12147612 AAATACATAT
12147622 ATATAAAATAAAA
1 ATATAAAATAAAA
12147635 ATATAAAATACGAAA
1 ATATAAAATA--AAA
12147650 ATA-AAAATAAAA
1 ATATAAAATAAAA
12147662 A
1 A
12147663 AGAAAATGGG
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 4 0.15
13 10 0.38
14 6 0.23
15 6 0.23
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (13 bp):
ATATAAAATAAAA
Found at i:12147650 original size:21 final size:18
Alignment explanation
Indices: 12147626--12147669 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 18
12147616 ACATATATAT
12147626 AAAATAAAAATATAAAATACG
1 AAAATAAAAATA-AAAA-A-G
12147647 AAAATAAAAATAAAAAAG
1 AAAATAAAAATAAAAAAG
12147665 AAAAT
1 AAAAT
12147670 GGGCTTACCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.26
19 1 0.04
20 4 0.17
21 12 0.52
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (18 bp):
AAAATAAAAATAAAAAAG
Found at i:12147923 original size:46 final size:46
Alignment explanation
Indices: 12147856--12147969 Score: 192
Period size: 46 Copynumber: 2.5 Consensus size: 46
12147846 AAGATTTGAT
* * *
12147856 CAAGGCTCATCTAAACAGAGGCTCAATGACTTTGAAAATGAATAAA
1 CAAGGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAATGAATAAA
12147902 CAAGGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAATGAATAAA
1 CAAGGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAATGAATAAA
*
12147948 CAAAGCTCCTCTAATCAGAGGC
1 CAAGGCTCCTCTAATCAGAGGC
12147970 ATTTTTTTTT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.39, C:0.22, G:0.18, T:0.21
Consensus pattern (46 bp):
CAAGGCTCCTCTAATCAGAGGCTCAACGACTTTGAAAATGAATAAA
Found at i:12148143 original size:41 final size:42
Alignment explanation
Indices: 12148094--12148417 Score: 423
Period size: 41 Copynumber: 7.9 Consensus size: 42
12148084 AAATAAATGT
*
12148094 TCCTCTAAACAGAGGC-ACCACCACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCAACCACGACTTTGAAAAGTAAATTGC
* * * *
12148135 TCCACTAAATAAAGACAACCACGACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCAACCACGACTTTGAAAAGTAAATTGC
* *
12148177 TCCTCTAAACAGAGGCAACGA-AACTTTGGAAAA-TAAATTGC
1 TCCTCTAAACAGAGGCAACCACGACTTT-GAAAAGTAAATTGC
*
12148218 TCCTCTAAATAGAGGC-ACCACGACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCAACCACGACTTTGAAAAGTAAATTGC
* *
12148259 TCCTCTAAACAGAGGCAACGA-AACTTTGGAAAA-TAAATTGC
1 TCCTCTAAACAGAGGCAACCACGACTTT-GAAAAGTAAATTGC
* *
12148300 TCCTCTAAACAAAGG-TACCACGACTTTGAAAAGTAAATTGC
1 TCCTCTAAACAGAGGCAACCACGACTTTGAAAAGTAAATTGC
* * *
12148341 TCCTCTAAACAGAGGCAACGA-AACTTTGAAAAATAAATTGC
1 TCCTCTAAACAGAGGCAACCACGACTTTGAAAAGTAAATTGC
*
12148382 TCCTCTAAATAGAGGC-ACCACGACTTTGAAAAGTAA
1 TCCTCTAAACAGAGGCAACCACGACTTTGAAAAGTAA
12148418 CGACTTTGAA
Statistics
Matches: 243, Mismatches: 30, Indels: 20
0.83 0.10 0.07
Matches are distributed among these distances:
40 19 0.08
41 168 0.69
42 56 0.23
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.23
Consensus pattern (42 bp):
TCCTCTAAACAGAGGCAACCACGACTTTGAAAAGTAAATTGC
Found at i:12148274 original size:82 final size:82
Alignment explanation
Indices: 12148094--12148417 Score: 526
Period size: 82 Copynumber: 3.9 Consensus size: 82
12148084 AAATAAATGT
* * * *
12148094 TCCTCTAAACAGAGGC-ACCACCACTTT-GAAAAGTAAATTGCTCCACTAAATAAAGACAACCAC
1 TCCTCTAAACAGAGGCAACGA-AACTTTGGAAAA-TAAATTGCTCCTCTAAATAAAGGC-ACCAC
12148157 GACTTTGAAAAGTAAATTGC
63 GACTTTGAAAAGTAAATTGC
*
12148177 TCCTCTAAACAGAGGCAACGAAACTTTGGAAAATAAATTGCTCCTCTAAATAGAGGCACCACGAC
1 TCCTCTAAACAGAGGCAACGAAACTTTGGAAAATAAATTGCTCCTCTAAATAAAGGCACCACGAC
12148242 TTTGAAAAGTAAATTGC
66 TTTGAAAAGTAAATTGC
* *
12148259 TCCTCTAAACAGAGGCAACGAAACTTTGGAAAATAAATTGCTCCTCTAAACAAAGGTACCACGAC
1 TCCTCTAAACAGAGGCAACGAAACTTTGGAAAATAAATTGCTCCTCTAAATAAAGGCACCACGAC
12148324 TTTGAAAAGTAAATTGC
66 TTTGAAAAGTAAATTGC
* *
12148341 TCCTCTAAACAGAGGCAACGAAACTTTGAAAAATAAATTGCTCCTCTAAATAGAGGCACCACGAC
1 TCCTCTAAACAGAGGCAACGAAACTTTGGAAAATAAATTGCTCCTCTAAATAAAGGCACCACGAC
12148406 TTTGAAAAGTAA
66 TTTGAAAAGTAA
12148418 CGACTTTGAA
Statistics
Matches: 227, Mismatches: 12, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
82 177 0.78
83 42 0.19
84 8 0.04
ACGTcount: A:0.40, C:0.22, G:0.15, T:0.23
Consensus pattern (82 bp):
TCCTCTAAACAGAGGCAACGAAACTTTGGAAAATAAATTGCTCCTCTAAATAAAGGCACCACGAC
TTTGAAAAGTAAATTGC
Found at i:12148355 original size:123 final size:123
Alignment explanation
Indices: 12148083--12148524 Score: 441
Period size: 123 Copynumber: 3.5 Consensus size: 123
12148073 CATGACTTCA
* * * *
12148083 AAAATAAA-TGTTCCTCTAAACAGAGGCACCACCACTTTGAAAAGTAAATTGCTCCACTAAATAA
1 AAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAATAG
* * *
12148147 AGACAACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAACTTTGG
66 AGGCAACCACAACTTTGAAAAGTAAATTGCTCCTCTAAACAAAGGCAACG-AACTTTGG
* *
12148206 AAAATAAATTGCTCCTCTAAATAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAG
1 AAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAATAG
* *
12148271 AGGCAACGA-AACTTTGGAAAA-TAAATTGCTCCTCTAAACAAAGGTACCACG-ACTTT-G
66 AGGCAACCACAACTTT-GAAAAGTAAATTGCTCCTCTAAACAAAGG--CAACGAACTTTGG
*
12148328 AAAAGTAAATTGCTCCTCTAAACAGAGGCA--ACGAAACTTTGAAAAATAAATTGCTCCTCTAAA
1 AAAA-TAAATTGCTCCTCTAAACAGAGGCACCACG--ACTTTGAAAAGTAAATTGCTCCTCTAAA
* * *
12148391 TAGAGGCACCACGACTTTGAAAAGTAACGACTTTGAAAAGTAAATTGCTCC-CTTAAACAGAGGT
63 TAGAGGCA--AC--C-----------ACAACTTTGAAAAGTAAATTGCTCCTC-TAAACAAAGGC
* *
12148455 AATGAAACTTTGA
112 AACG-AACTTTGG
* *
12148468 AAAATAAATTGCTCTTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTACTCCT
1 AAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCT
12148525 TGACAATCAT
Statistics
Matches: 265, Mismatches: 24, Indels: 44
0.80 0.07 0.13
Matches are distributed among these distances:
121 3 0.01
122 5 0.02
123 98 0.37
124 62 0.23
125 6 0.02
137 2 0.01
138 7 0.03
139 75 0.28
140 4 0.02
141 3 0.01
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (123 bp):
AAAATAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAATAG
AGGCAACCACAACTTTGAAAAGTAAATTGCTCCTCTAAACAAAGGCAACGAACTTTGG
Found at i:12148422 original size:16 final size:16
Alignment explanation
Indices: 12148401--12148433 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
12148391 TAGAGGCACC
12148401 ACGACTTTGAAAAGTA
1 ACGACTTTGAAAAGTA
12148417 ACGACTTTGAAAAGTA
1 ACGACTTTGAAAAGTA
12148433 A
1 A
12148434 ATTGCTCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.24
Consensus pattern (16 bp):
ACGACTTTGAAAAGTA
Found at i:12148488 original size:98 final size:98
Alignment explanation
Indices: 12148319--12148515 Score: 342
Period size: 98 Copynumber: 2.0 Consensus size: 98
12148309 CAAAGGTACC
12148319 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAACTTTGAAAAATAAATTGCTC
1 ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAACTTTGAAAAATAAATTGCTC
*
12148384 CTCTAAATAGAGGCACCACGACTTTGAAAAGTA
66 CTCTAAACAGAGGCACCACGACTTTGAAAAGTA
* *
12148417 ACGACTTTGAAAAGTAAATTGCTCC-CTTAAACAGAGGTAATGAAACTTTGAAAAATAAATTGCT
1 ACGACTTTGAAAAGTAAATTGCTCCTC-TAAACAGAGGCAACGAAACTTTGAAAAATAAATTGCT
*
12148481 CTTCTAAACAGAGGCACCACGACTTTGAAAAGTA
65 CCTCTAAACAGAGGCACCACGACTTTGAAAAGTA
12148515 A
1 A
12148516 ATTACTCCTT
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
97 1 0.01
98 93 0.99
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.24
Consensus pattern (98 bp):
ACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACGAAACTTTGAAAAATAAATTGCTC
CTCTAAACAGAGGCACCACGACTTTGAAAAGTA
Found at i:12148506 original size:41 final size:39
Alignment explanation
Indices: 12148416--12148523 Score: 119
Period size: 41 Copynumber: 2.7 Consensus size: 39
12148406 TTTGAAAAGT
*
12148416 AACGACTTTGAAAAGTAAATTGCTCCCTTAAACAGAGGT
1 AACGACTTTGAAAAGTAAATTGCTCCCTTAAACAGAGGC
* * *
12148455 AATGAAACTTTGAAAAATAAATTGCT-CTTCTAAACAGAGGC
1 AACG--ACTTTGAAAAGTAAATTGCTCCCT-TAAACAGAGGC
*
12148496 ACCACGACTTTGAAAAGTAAATTACTCC
1 A--ACGACTTTGAAAAGTAAATTGCTCC
12148524 TTGACAATCA
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
39 3 0.05
40 2 0.04
41 48 0.86
42 1 0.02
43 2 0.04
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (39 bp):
AACGACTTTGAAAAGTAAATTGCTCCCTTAAACAGAGGC
Found at i:12148852 original size:44 final size:44
Alignment explanation
Indices: 12148791--12148895 Score: 126
Period size: 43 Copynumber: 2.4 Consensus size: 44
12148781 TTCAAGACTT
* *
12148791 TTCAAAGGTTCTCATTTGGCAAACTTAG-AATTCATATCCAAAAA
1 TTCAAAGCTTTTCATTTGG-AAACTTAGAAATTCATATCCAAAAA
** *
12148835 -TCTAAAGCTTTTCATTT-GAATTTTGGAAATTCATATCCAAAAA
1 TTC-AAAGCTTTTCATTTGGAAACTTAGAAATTCATATCCAAAAA
12148878 TTCAAAGCTTTTCATTTG
1 TTCAAAGCTTTTCATTTG
12148896 AGTTCAAAGG
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
42 5 0.10
43 33 0.63
44 14 0.27
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (44 bp):
TTCAAAGCTTTTCATTTGGAAACTTAGAAATTCATATCCAAAAA
Found at i:12154323 original size:58 final size:57
Alignment explanation
Indices: 12154221--12154420 Score: 249
Period size: 58 Copynumber: 3.4 Consensus size: 57
12154211 TGTACAAGGA
** * *
12154221 AAAATTGATACTTTCAACTTTTCTTC-AAAATATTTTTTGGAAACTTGAATTTTGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTT-AATTTCGAGG
*
12154278 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTCTTGAAAACTTTAATTTCGAGG
1 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAAC-TTAATTTCGAGG
* * ** *
12154336 AAAATTGATACTTTCAACTTTTCCCTAAAAATATATATTTTTTTAATTCTTAATTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCC--CAAA-A-ATATTTTTTGAAAACTTAATTTCGAGG
12154397 AAAATTGATACTTTCAACTTTTCC
1 AAAATTGATACTTTCAACTTTTCC
12154421 TAAAAAAAAA
Statistics
Matches: 126, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
57 24 0.19
58 50 0.40
59 2 0.02
60 3 0.02
61 36 0.29
62 11 0.09
ACGTcount: A:0.35, C:0.14, G:0.08, T:0.42
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAACTTAATTTCGAGG
Found at i:12154524 original size:60 final size:56
Alignment explanation
Indices: 12154438--12154562 Score: 151
Period size: 60 Copynumber: 2.1 Consensus size: 56
12154428 AAAAAAACCC
* * *
12154438 TTTTTGAAGATTTATTCTTAAAGAAAATTGATACTTTCAACTTTTTCTCAAAAAAAACCT
1 TTTTTGAAAATTTATT-TTAAGGAAAATTGATACTTTCAAC-TTTTCTCAAAAAATA--T
*
12154498 TTTTTGAAAATTTATTCTTAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAAAGTTT
1 TTTTTGAAAATTTATT-TTAAGGAAAATTGATACTTTCAACTTTT-CTCAAAAAA-TAT
12154557 TTTTTG
1 TTTTTG
12154563 TTTTTTTTTT
Statistics
Matches: 59, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
59 11 0.19
60 48 0.81
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (56 bp):
TTTTTGAAAATTTATTTTAAGGAAAATTGATACTTTCAACTTTTCTCAAAAAATAT
Found at i:12154970 original size:21 final size:21
Alignment explanation
Indices: 12154945--12154987 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
12154935 TCAGCAGAAC
*
12154945 CCTTT-TTCTCTTCTCTCTTTT
1 CCTTTCTT-TCTTCTCTCCTTT
12154966 CCTTTCTTTCTTCTCTCCTTT
1 CCTTTCTTTCTTCTCTCCTTT
12154987 C
1 C
12154988 TCTCTAGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (21 bp):
CCTTTCTTTCTTCTCTCCTTT
Found at i:12155674 original size:52 final size:51
Alignment explanation
Indices: 12155617--12155721 Score: 126
Period size: 52 Copynumber: 2.0 Consensus size: 51
12155607 AAATAATAAT
* *
12155617 AAATATACAAAAGTTAAAATAA-ATAAATAA-AT-AAATAAGGAAAAAAAAGAAA
1 AAATATACAAAA-TAAAAATAACATAAA-AATATAAAAT-ACGAAAAAAAA-AAA
*
12155669 AAATATATAAAATAAAAATAACATAAAAATATAAAATACGAAAAAAAAAAA
1 AAATATACAAAATAAAAATAACATAAAAATATAAAATACGAAAAAAAAAAA
12155720 AA
1 AA
12155722 TAGGCTTCCC
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
51 15 0.32
52 28 0.60
53 4 0.09
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (51 bp):
AAATATACAAAATAAAAATAACATAAAAATATAAAATACGAAAAAAAAAAA
Found at i:12155685 original size:24 final size:24
Alignment explanation
Indices: 12155657--12155723 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 24
12155647 ATAAATAAGG
12155657 AAAAAAAAGAAAAAATATATAAAAT
1 AAAAAAAA-AAAAAATATATAAAAT
* *
12155682 AAAAATAACATAAAA-ATATAAAAT
1 AAAAA-AAAAAAAAATATATAAAAT
12155706 ACGAAAAAAAAAAAAATA
1 A--AAAAAAAAAAAAATA
12155724 GGCTTCCCCG
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
24 10 0.29
25 17 0.50
26 7 0.21
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (24 bp):
AAAAAAAAAAAAAATATATAAAAT
Found at i:12156648 original size:19 final size:19
Alignment explanation
Indices: 12156624--12156705 Score: 80
Period size: 19 Copynumber: 4.2 Consensus size: 19
12156614 AAAGTTTCCA
12156624 TTTTTCATTTTTATTTTAT
1 TTTTTCATTTTTATTTTAT
12156643 TTTTTCATTTTTA-TTTA-
1 TTTTTCATTTTTATTTTAT
12156660 -TTTTCATATTTTGAGTTTATAT
1 TTTTTCAT-TTTT-A-TTT-TAT
*
12156682 TCATTTTCATTTTTATTATAT
1 T--TTTTCATTTTTATTTTAT
12156703 TTT
1 TTT
12156706 ATTTTACTAG
Statistics
Matches: 53, Mismatches: 1, Indels: 18
0.74 0.01 0.25
Matches are distributed among these distances:
16 7 0.13
17 4 0.08
18 5 0.09
19 15 0.28
20 2 0.04
21 6 0.11
22 2 0.04
23 1 0.02
24 4 0.08
25 7 0.13
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.72
Consensus pattern (19 bp):
TTTTTCATTTTTATTTTAT
Found at i:12156663 original size:23 final size:24
Alignment explanation
Indices: 12156633--12156709 Score: 75
Period size: 25 Copynumber: 3.1 Consensus size: 24
12156623 ATTTTTCATT
12156633 TTTATTTT-ATTTTTTCATTTTTA
1 TTTATTTTCATTTTTTCATTTTTA
* * *
12156656 TTTATTTTCATATTTTGAGTTTATA
1 TTTATTTTCATTTTTTCA-TTTTTA
* *
12156681 TTCATTTTCATTTTTATTATATTTTA
1 TTTATTTTCATTTTT-TCAT-TTTTA
12156707 TTT
1 TTT
12156710 TACTAGTTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
23 8 0.19
24 7 0.17
25 19 0.45
26 8 0.19
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (24 bp):
TTTATTTTCATTTTTTCATTTTTA
Found at i:12156709 original size:16 final size:16
Alignment explanation
Indices: 12156635--12156710 Score: 61
Period size: 16 Copynumber: 4.7 Consensus size: 16
12156625 TTTTCATTTT
12156635 TATTTTA-TTTTTTCA
1 TATTTTATTTTTTTCA
12156650 T-TTTTATTTATTTTCA
1 TATTTTATTT-TTTTCA
*
12156666 TATTTTGAGTTTATATTCA
1 TATTTT-A-TTT-TTTTCA
*
12156685 T-TTTCATTTTTATT-A
1 TATTTTATTTTT-TTCA
12156700 TATTTTATTTT
1 TATTTTATTTT
12156711 ACTAGTTTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
14 5 0.10
15 6 0.12
16 20 0.40
17 5 0.10
18 4 0.08
19 10 0.20
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (16 bp):
TATTTTATTTTTTTCA
Found at i:12158784 original size:14 final size:14
Alignment explanation
Indices: 12158767--12158821 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
12158757 AAAAAAACCC
12158767 AAAAACAAAAATAA
1 AAAAACAAAAATAA
* *
12158781 AAAAACAATATTAA
1 AAAAACAAAAATAA
12158795 AAACAACCAAGAAATAA
1 AAA-AA-CAA-AAATAA
12158812 CAAAAACAAA
1 -AAAAACAAA
12158822 GAAATGGACT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
14 15 0.45
15 3 0.09
16 6 0.18
17 6 0.18
18 3 0.09
ACGTcount: A:0.76, C:0.13, G:0.02, T:0.09
Consensus pattern (14 bp):
AAAAACAAAAATAA
Found at i:12159032 original size:34 final size:34
Alignment explanation
Indices: 12158989--12159057 Score: 84
Period size: 34 Copynumber: 2.0 Consensus size: 34
12158979 TGTTATGACA
* * * *
12158989 TTTTGAAAATCCATTTGCGAAAAGTTATAATACT
1 TTTTAAAAATACATTTACGAAAAGTTATAACACT
* *
12159023 TTTTAAAAATATATTTATGAAAAGTTATAACACT
1 TTTTAAAAATACATTTACGAAAAGTTATAACACT
12159057 T
1 T
12159058 ATCGAAAATG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.41
Consensus pattern (34 bp):
TTTTAAAAATACATTTACGAAAAGTTATAACACT
Found at i:12159066 original size:34 final size:34
Alignment explanation
Indices: 12159007--12159076 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 34
12158997 ATCCATTTGC
* * * *
12159007 GAAAAGTTATAATACTTTTTAAAAATATATTTAT
1 GAAAAGTTATAACACTTATCAAAAATACATTTAT
* *
12159041 GAAAAGTTATAACACTTATCGAAAATGCATTTAT
1 GAAAAGTTATAACACTTATCAAAAATACATTTAT
12159075 GA
1 GA
12159077 GAGTGCTAGG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.37
Consensus pattern (34 bp):
GAAAAGTTATAACACTTATCAAAAATACATTTAT
Found at i:12165110 original size:7 final size:7
Alignment explanation
Indices: 12165100--12165181 Score: 59
Period size: 7 Copynumber: 12.6 Consensus size: 7
12165090 TTAGGTTTTT
12165100 GGTTTAG
1 GGTTTAG
*
12165107 GGTTTAT
1 GGTTTAG
12165114 GGTTT--
1 GGTTTAG
*
12165119 GATTTAG
1 GGTTTAG
*
12165126 GGATTAG
1 GGTTTAG
12165133 GG-TTA-
1 GGTTTAG
*
12165138 GCTTTAG
1 GGTTTAG
*
12165145 GGTTTAA
1 GGTTTAG
12165152 GGTTTAG
1 GGTTTAG
*
12165159 GATTT-G
1 GGTTTAG
*
12165165 GGATT-G
1 GGTTTAG
12165171 GGTTTAG
1 GGTTTAG
12165178 GGTT
1 GGTT
12165182 AGAGATAAGG
Statistics
Matches: 58, Mismatches: 12, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
5 5 0.09
6 15 0.26
7 38 0.66
ACGTcount: A:0.17, C:0.01, G:0.38, T:0.44
Consensus pattern (7 bp):
GGTTTAG
Found at i:12165124 original size:19 final size:19
Alignment explanation
Indices: 12165097--12165156 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 19
12165087 CAGTTAGGTT
* *
12165097 TTTGGTTTAGGGTTTATGG
1 TTTGATTTAGGGTTTAAGG
* *
12165116 TTTGATTTAGGGATTAGGG
1 TTTGATTTAGGGTTTAAGG
* *
12165135 TTAGCTTTAGGGTTTAAGG
1 TTTGATTTAGGGTTTAAGG
12165154 TTT
1 TTT
12165157 AGGATTTGGG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.17, C:0.02, G:0.33, T:0.48
Consensus pattern (19 bp):
TTTGATTTAGGGTTTAAGG
Found at i:12165144 original size:38 final size:37
Alignment explanation
Indices: 12165102--12165174 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 37
12165092 AGGTTTTTGG
*
12165102 TTTAGGGTTTATGGTTT-GATTTAGGGATTAGGGTTAGC
1 TTTAGGGTTTAAGGTTTAGATTT-GGGATT-GGGTTAGC
12165140 TTTAGGGTTTAAGGTTTAGGATTTGGGATTGGGTT
1 TTTAGGGTTTAAGGTTTA-GATTTGGGATTGGGTT
12165175 TAGGGTTAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
38 21 0.66
39 6 0.19
40 5 0.16
ACGTcount: A:0.18, C:0.01, G:0.36, T:0.45
Consensus pattern (37 bp):
TTTAGGGTTTAAGGTTTAGATTTGGGATTGGGTTAGC
Found at i:12165275 original size:18 final size:17
Alignment explanation
Indices: 12165252--12165294 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 17
12165242 TAGGGTTCAA
12165252 GTTTAGGGTTAGGATTTG
1 GTTTAGGGTTAGG-TTTG
*
12165270 GTTTAGAGTTTAGGTTTG
1 GTTTAG-GGTTAGGTTTG
12165288 GTTTAGG
1 GTTTAGG
12165295 ATTTGGTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 16 0.70
19 6 0.26
ACGTcount: A:0.16, C:0.00, G:0.37, T:0.47
Consensus pattern (17 bp):
GTTTAGGGTTAGGTTTG
Found at i:12165282 original size:7 final size:6
Alignment explanation
Indices: 12165252--12165305 Score: 51
Period size: 6 Copynumber: 9.0 Consensus size: 6
12165242 TAGGGTTCAA
*
12165252 GTTTAG GGTTAG GATTT-G GTTTAG AGTTTAG GTTT-G GTTTAG GATTT-G
1 GTTTAG GTTTAG G-TTTAG GTTTAG -GTTTAG GTTTAG GTTTAG G-TTTAG
12165300 GTTTAG
1 GTTTAG
12165306 AACTAAGGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
5 11 0.28
6 18 0.45
7 11 0.28
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.48
Consensus pattern (6 bp):
GTTTAG
Found at i:12165315 original size:30 final size:30
Alignment explanation
Indices: 12165260--12165316 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
12165250 AAGTTTAGGG
** *
12165260 TTAGGATTTGGTTTAGAGTTTAGGTTTGGT
1 TTAGGATTTGGTTTAGAACTAAGGTTTGGT
12165290 TTAGGATTTGGTTTAGAACTAAGGTTT
1 TTAGGATTTGGTTTAGAACTAAGGTTT
12165317 TAGGTAGGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.02, G:0.30, T:0.47
Consensus pattern (30 bp):
TTAGGATTTGGTTTAGAACTAAGGTTTGGT
Found at i:12166716 original size:33 final size:34
Alignment explanation
Indices: 12166665--12166745 Score: 110
Period size: 33 Copynumber: 2.4 Consensus size: 34
12166655 TTTTTCTTTT
* *
12166665 AGTATAATATTTTCCTAGATTTAGAGAGTGAA-AAG
1 AGTA-AAT-TTTTGCTAGATTTAGAGAGAGAAGAAG
12166700 AGTAAATTTTTGCTAGATTTAGAGAGAGAAGAAG
1 AGTAAATTTTTGCTAGATTTAGAGAGAGAAGAAG
*
12166734 AATAAATTTTTG
1 AGTAAATTTTTG
12166746 AAGAAGAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
33 21 0.50
34 17 0.40
35 4 0.10
ACGTcount: A:0.41, C:0.04, G:0.21, T:0.35
Consensus pattern (34 bp):
AGTAAATTTTTGCTAGATTTAGAGAGAGAAGAAG
Found at i:12167453 original size:196 final size:203
Alignment explanation
Indices: 12167056--12167458 Score: 739
Period size: 196 Copynumber: 2.0 Consensus size: 203
12167046 TACATGGATG
12167056 AAGATGAAAAATGCATGAAAAGTAAGAAAACTACCTAAGAAAGCTTTATTCCACAAGAGAGATTT
1 AAGATGAAAAATGCATGAAAAGTAAGAAAACTACCTAAGAAAGCTTTATTCCACAAGAGAGATTT
*
12167121 TTTTTTCAAGAGTATTTTTAATGGATTATATATATATATATATATATATTGTTGCTGGAAAAGAG
66 TTTTTTCAAGAGTATTTTTAATGGA-TATAGATATATATATATATATATTGTTGCTGGAAAAGAG
12167186 AGTCTCTACACCTCCATGCATGTAAATTTAAAGAGGCAAAACACCCATCTCAACCATTGAATCAA
130 AGTCTCTACACCTCCATGCATGTAAATTTAAAGAGGCAAAACACCCATCTCAACCATTGAATCAA
12167251 AATACATCT
195 AATACATCT
12167260 AAGATGAAAAATGCATGAAAAGTAAGAAAACTACCTAAGAAAGCTTTATTCCACAAGAGAGATTT
1 AAGATGAAAAATGCATGAAAAGTAAGAAAACTACCTAAGAAAGCTTTATTCCACAAGAGAGATTT
12167325 TTTTTTCAAGAGTATTTTTAATGG-T-T-GATATATATAT-T-T-T-TTGTTGCTGGAAAAGAGA
66 TTTTTTCAAGAGTATTTTTAATGGATATAGATATATATATATATATATTGTTGCTGGAAAAGAGA
12167383 GTCTCTACACCTCCATGCATGTAAATTTAAAGAGGCAAAACACCCATCTCAACCATTGAATCAAA
131 GTCTCTACACCTCCATGCATGTAAATTTAAAGAGGCAAAACACCCATCTCAACCATTGAATCAAA
12167448 ATACATCT
196 ATACATCT
12167456 AAG
1 AAG
12167459 TGTAATAATT
Statistics
Matches: 198, Mismatches: 1, Indels: 8
0.96 0.00 0.04
Matches are distributed among these distances:
196 94 0.47
197 1 0.01
198 1 0.01
199 1 0.01
200 10 0.05
201 1 0.01
202 1 0.01
204 89 0.45
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.30
Consensus pattern (203 bp):
AAGATGAAAAATGCATGAAAAGTAAGAAAACTACCTAAGAAAGCTTTATTCCACAAGAGAGATTT
TTTTTTCAAGAGTATTTTTAATGGATATAGATATATATATATATATATTGTTGCTGGAAAAGAGA
GTCTCTACACCTCCATGCATGTAAATTTAAAGAGGCAAAACACCCATCTCAACCATTGAATCAAA
ATACATCT
Found at i:12172594 original size:20 final size:19
Alignment explanation
Indices: 12172565--12172603 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
12172555 CATAAAAACT
*
12172565 ACAAAAAATTTATTATTTAA
1 ACAAAAAA-TTATGATTTAA
*
12172585 ACAAACAATTATGATTTAA
1 ACAAAAAATTATGATTTAA
12172604 TTTAAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.36
Consensus pattern (19 bp):
ACAAAAAATTATGATTTAA
Found at i:12175166 original size:49 final size:49
Alignment explanation
Indices: 12175094--12175187 Score: 179
Period size: 49 Copynumber: 1.9 Consensus size: 49
12175084 GCCCTAAACT
*
12175094 TTAGCCAATCAATGATTTAACTAATGCAAATTCATCATGAGTTTTGGAG
1 TTAGCCAATCAATGATTTAACTAATCCAAATTCATCATGAGTTTTGGAG
12175143 TTAGCCAATCAATGATTTAACTAATCCAAATTCATCATGAGTTTT
1 TTAGCCAATCAATGATTTAACTAATCCAAATTCATCATGAGTTTT
12175188 AGAATGAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 44 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.36
Consensus pattern (49 bp):
TTAGCCAATCAATGATTTAACTAATCCAAATTCATCATGAGTTTTGGAG
Done.