Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 77 of 100
Found at i:13855775 original size:32 final size:28
Alignment explanation
Indices: 13855715--13855786 Score: 60
Period size: 27 Copynumber: 2.5 Consensus size: 28
13855705 TATTTTGAGT
*
13855715 TTTCTTTTATTTAT-TTT-CAATTTTTTA
1 TTTCATTTATTT-TATTTTCAATTTTTTA
13855742 TTTCATTTATTTTATTTTACAGA-TTTTTA
1 TTTCATTTATTTTATTTT-CA-ATTTTTTA
13855771 TTATTCATTTAATTTT
1 -T-TTCATTT-ATTTT
13855787 GTTGAGTAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
26 1 0.03
27 14 0.38
29 8 0.22
30 2 0.05
31 7 0.19
32 5 0.14
ACGTcount: A:0.22, C:0.07, G:0.01, T:0.69
Consensus pattern (28 bp):
TTTCATTTATTTTATTTTCAATTTTTTA
Found at i:13860367 original size:20 final size:20
Alignment explanation
Indices: 13860342--13860384 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
13860332 ATAAATTTAC
13860342 TTAAATAAATTTTTATACTT
1 TTAAATAAATTTTTATACTT
*
13860362 TTAAATAAATTTTTATATTT
1 TTAAATAAATTTTTATACTT
13860382 TTA
1 TTA
13860385 TTACATTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (20 bp):
TTAAATAAATTTTTATACTT
Found at i:13860429 original size:30 final size:30
Alignment explanation
Indices: 13860361--13860465 Score: 97
Period size: 31 Copynumber: 3.5 Consensus size: 30
13860351 TTTTTATACT
* *
13860361 TTTAAATAAATTTTTATATTTTT-A-TTACA
1 TTTAAATAAATCTTTA-ATTTTTAATTTATA
*
13860390 TTCAAATAAATCTTTAATTTTTAATTTATA
1 TTTAAATAAATCTTTAATTTTTAATTTATA
* ** *
13860420 TTTAAATAAATTTTTAAACATTTAATTTGTA
1 TTTAAATAAATCTTT-AATTTTTAATTTATA
*
13860451 ATTAAATAAACTCTT
1 TTTAAATAAA-TCTT
13860466 AATATAAATT
Statistics
Matches: 62, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
28 6 0.10
29 15 0.24
30 17 0.27
31 21 0.34
32 3 0.05
ACGTcount: A:0.41, C:0.06, G:0.01, T:0.52
Consensus pattern (30 bp):
TTTAAATAAATCTTTAATTTTTAATTTATA
Found at i:13860447 original size:31 final size:30
Alignment explanation
Indices: 13860361--13860460 Score: 103
Period size: 29 Copynumber: 3.3 Consensus size: 30
13860351 TTTTTATACT
* * *
13860361 TTTAAATAAATTTTTATATTTTTA-TTACA
1 TTTAAATAAATTTTTAAATTTTAATTTATA
* * *
13860390 TTCAAATAAATCTTTAATTTTTAATTTATA
1 TTTAAATAAATTTTTAAATTTTAATTTATA
* *
13860420 TTTAAATAAATTTTTAAACATTTAATTTGTA
1 TTTAAATAAATTTTTAAA-TTTTAATTTATA
*
13860451 ATTAAATAAA
1 TTTAAATAAA
13860461 CTCTTAATAT
Statistics
Matches: 57, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
29 19 0.33
30 19 0.33
31 19 0.33
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.52
Consensus pattern (30 bp):
TTTAAATAAATTTTTAAATTTTAATTTATA
Found at i:13860530 original size:30 final size:29
Alignment explanation
Indices: 13860491--13860566 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
13860481 TTCATTTAAA
* *
13860491 ATAAGAATTTATTTAAATATAAATTAAA-GT
1 ATAAAAATTTATTTAAATA-AAA-TAAATAT
* * *
13860521 ATAAAAATTTACTTGAATAACATAAATAT
1 ATAAAAATTTATTTAAATAAAATAAATAT
13860550 ATAAAAATTTATTTAAA
1 ATAAAAATTTATTTAAA
13860567 ACAAGTAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
28 4 0.11
29 18 0.47
30 16 0.42
ACGTcount: A:0.55, C:0.03, G:0.04, T:0.38
Consensus pattern (29 bp):
ATAAAAATTTATTTAAATAAAATAAATAT
Found at i:13861036 original size:22 final size:22
Alignment explanation
Indices: 13861008--13861069 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
13860998 GTTAGTATCT
13861008 TTTTATATTCTATTTTTATTTA
1 TTTTATATTCTATTTTTATTTA
* *
13861030 TTTTATATTTTAAGTTTTTCTTTA
1 TTTTATATTCT-A-TTTTTATTTA
* *
13861054 -TTTATTTTCAATTTTT
1 TTTTATATTCTATTTTT
13861070 TGGTTTTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
21 5 0.15
22 11 0.33
23 8 0.24
24 9 0.27
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.73
Consensus pattern (22 bp):
TTTTATATTCTATTTTTATTTA
Found at i:13861076 original size:28 final size:28
Alignment explanation
Indices: 13861022--13861084 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
13861012 ATATTCTATT
* *
13861022 TTTATTTATTTTATATTTTAAGTTTTTC
1 TTTATTTATTTTATATTTTAAGGTTTTA
**
13861050 TTTATTTATTTTCA-ATTTTTTGGTTTTA
1 TTTATTTATTTT-ATATTTTAAGGTTTTA
13861078 TTTATTT
1 TTTATTT
13861085 TCTTTTACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 29 0.97
29 1 0.03
ACGTcount: A:0.19, C:0.03, G:0.05, T:0.73
Consensus pattern (28 bp):
TTTATTTATTTTATATTTTAAGGTTTTA
Found at i:13864858 original size:9 final size:9
Alignment explanation
Indices: 13864837--13864880 Score: 58
Period size: 9 Copynumber: 5.1 Consensus size: 9
13864827 TCAAATTTTT
13864837 ATGAAAAATA
1 ATGAAAAA-A
13864847 ATGAAAAAA
1 ATGAAAAAA
13864856 ATGAAAAAA
1 ATGAAAAAA
13864865 AT---AAAA
1 ATGAAAAAA
13864871 ATGAAAAAA
1 ATGAAAAAA
13864880 A
1 A
13864881 ATTGATGGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
6 6 0.19
9 17 0.55
10 8 0.26
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (9 bp):
ATGAAAAAA
Found at i:13864861 original size:19 final size:17
Alignment explanation
Indices: 13864837--13864880 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 17
13864827 TCAAATTTTT
13864837 ATGAAAAATAATGAAAAAA
1 ATGAAAAA-AAT-AAAAAA
13864856 ATGAAAAAAAT--AAAA
1 ATGAAAAAAATAAAAAA
13864871 ATGAAAAAAA
1 ATGAAAAAAA
13864881 ATTGATGGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
15 14 0.56
18 3 0.12
19 8 0.32
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (17 bp):
ATGAAAAAAATAAAAAA
Found at i:13864882 original size:16 final size:15
Alignment explanation
Indices: 13864852--13864880 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
13864842 AAATAATGAA
13864852 AAAAATGAAAAAAAT
1 AAAAATGAAAAAAAT
13864867 AAAAATGAAAAAAA
1 AAAAATGAAAAAAA
13864881 ATTGATGGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (15 bp):
AAAAATGAAAAAAAT
Found at i:13864970 original size:63 final size:64
Alignment explanation
Indices: 13864850--13864984 Score: 168
Period size: 63 Copynumber: 2.1 Consensus size: 64
13864840 AAAAATAATG
*
13864850 AAAAAAATGAAAAAAATAAAAATGAAAAAAAATTGATGGGATAAAATGCTAATGTGCTTCAT-T
1 AAAAAAATGAAAAAAATAAAAATGAAAAAAAATTGATGGGATAAAATGCTAAAGTGCTTCATAT
* * * * *
13864913 AAAAAAATTAAAAAAA-ATAAATGAAAGAGAAATTGATGGGGTAAAAT-ATCAAAGTGCTTCATA
1 AAAAAAATGAAAAAAATAAAAATGAAA-AAAAATTGATGGGATAAAATGCT-AAAGTGCTTCATA
13864976 T
64 T
*
13864977 GAAAAAAT
1 AAAAAAAT
13864985 AATCCCTAGT
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
62 10 0.16
63 44 0.71
64 8 0.13
ACGTcount: A:0.58, C:0.04, G:0.15, T:0.23
Consensus pattern (64 bp):
AAAAAAATGAAAAAAATAAAAATGAAAAAAAATTGATGGGATAAAATGCTAAAGTGCTTCATAT
Found at i:13866354 original size:86 final size:86
Alignment explanation
Indices: 13866208--13866602 Score: 339
Period size: 86 Copynumber: 4.6 Consensus size: 86
13866198 TCATTTTTTT
* * ** * * ** *
13866208 AACCTTTCTAAAACTTGAAATCTTATGAATCTTTCTTTCTTATGAATTTGAAAG-ACCTTGCGAA
1 AACCTTTGTGAAACTTGAAATCTTACAAATATTTTTTTCTTGCGAATCTGAAAGTA-CTTGCGAA
* *
13866272 CCT-AGAATCTTTATGAATCTAG
65 CCTGA-AATCTTTACGAATTTAG
* * *
13866294 AACCTTTGTGAAACTTGAAATCTTGCAAATATTTTTTTCTTGCAAATCTGAAAGTACTTGCAAAC
1 AACCTTTGTGAAACTTGAAATCTTACAAATATTTTTTTCTTGCGAATCTGAAAGTACTTGCGAAC
* **
13866359 TTGAAATCTTTGTGAATTTAG
66 CTGAAATCTTTACGAATTTAG
* * * * * * *
13866380 AACTTTTGTGAAACTTGGAATCTTACGAAT-TTTTCTTTCTTGTGAATCTGAAAGTCCTTACAAA
1 AACCTTTGTGAAACTTGAAATCTTACAAATATTTT-TTTCTTGCGAATCTGAAAGTACTTGCGAA
*
13866444 CCTGAAATTTTTACGAATTTAG
65 CCTGAAATCTTTACGAATTTAG
* * ** * * * * *
13866466 AATCTTTGTGAAACTTGAAATATTATGAATCTTTTTTTCTTACGAATTTAAAAGTCCTTGCGAAC
1 AACCTTTGTGAAACTTGAAATCTTACAAATATTTTTTTCTTGCGAATCTGAAAGTACTTGCGAAC
* * *
13866531 CTGAAATCTTTGCAAATATAG
66 CTGAAATCTTTACGAATTTAG
* * * * * *
13866552 AACCTTTGCGAAATTTGAAATCTTTCGAAA-ATTTTTTCCTTGAGAACCTGA
1 AACCTTTGTGAAACTTGAAATCTTAC-AAATATTTTTTTCTTGCGAATCTGA
13866603 GATCTTCGCG
Statistics
Matches: 248, Mismatches: 56, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
85 4 0.02
86 236 0.95
87 8 0.03
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.39
Consensus pattern (86 bp):
AACCTTTGTGAAACTTGAAATCTTACAAATATTTTTTTCTTGCGAATCTGAAAGTACTTGCGAAC
CTGAAATCTTTACGAATTTAG
Found at i:13866504 original size:172 final size:172
Alignment explanation
Indices: 13866218--13866580 Score: 431
Period size: 172 Copynumber: 2.1 Consensus size: 172
13866208 AACCTTTCTA
* * * *
13866218 AAACTTGAAATCTTATGAATCTTTCTTTCTTATGAATTTGAAAGACCTTGCGAACCTAGAATCTT
1 AAACTTGAAATCTTACGAATCTTTCTTTCTTATGAATCTGAAAGACCTTACAAACCTAGAATCTT
* * * * *
13866283 TATGAATCTAGAACCTTTGTGAAACTTGAAATCTTGCAAATATTTTTTTCTTGCAAATCTGAAAG
66 TACGAATCTAGAACCTTTGTGAAACTTGAAATATTACAAATATTTTTTTCTTACAAATCTAAAAG
* ** * * *
13866348 TACTTGCAAACTTGAAATCTTTGTGAATTTAGAACTTTTGTG
131 TACTTGCAAACCTGAAATCTTTGCAAATATAGAACCTTTGCG
* * * * *
13866390 AAACTTGGAATCTTACGAATTTTTCTTTCTTGTGAATCTGAAAGTCCTTACAAACCT-GAAATTT
1 AAACTTGAAATCTTACGAATCTTTCTTTCTTATGAATCTGAAAGACCTTACAAACCTAG-AATCT
* * ** * * *
13866454 TTACGAATTTAGAATCTTTGTGAAACTTGAAATATTATGAATCTTTTTTTCTTACGAATTTAAAA
65 TTACGAATCTAGAACCTTTGTGAAACTTGAAATATTACAAATATTTTTTTCTTACAAATCTAAAA
* *
13866519 GTCCTTGCGAACCTGAAATCTTTGCAAATATAGAACCTTTGCG
130 GTACTTGCAAACCTGAAATCTTTGCAAATATAGAACCTTTGCG
* *
13866562 AAATTTGAAATCTTTCGAA
1 AAACTTGAAATCTTACGAA
13866581 AATTTTTTCC
Statistics
Matches: 158, Mismatches: 32, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
171 1 0.01
172 157 0.99
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (172 bp):
AAACTTGAAATCTTACGAATCTTTCTTTCTTATGAATCTGAAAGACCTTACAAACCTAGAATCTT
TACGAATCTAGAACCTTTGTGAAACTTGAAATATTACAAATATTTTTTTCTTACAAATCTAAAAG
TACTTGCAAACCTGAAATCTTTGCAAATATAGAACCTTTGCG
Found at i:13866576 original size:18 final size:18
Alignment explanation
Indices: 13866532--13866581 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 18
13866522 CTTGCGAACC
13866532 TGAAATCTTTGC-AAATA
1 TGAAATCTTTGCGAAATA
* *
13866549 T-AGAACCTTTGCGAAATT
1 TGA-AATCTTTGCGAAATA
13866567 TGAAATCTTT-CGAAA
1 TGAAATCTTTGCGAAA
13866582 ATTTTTTCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 6
0.75 0.08 0.17
Matches are distributed among these distances:
16 1 0.04
17 14 0.52
18 11 0.41
19 1 0.04
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (18 bp):
TGAAATCTTTGCGAAATA
Found at i:13866599 original size:68 final size:68
Alignment explanation
Indices: 13866520--13866648 Score: 177
Period size: 68 Copynumber: 1.9 Consensus size: 68
13866510 AATTTAAAAG
* * * * *
13866520 TCCTTGCGAACCTGAAATCTTTGCAAATATAGAACCTTTGCGAAATTTGAAATCTTTCGAAAATT
1 TCCTTGAGAACCTGAAATCTTCGCAAATATAAAACCTATGCGAAATTTGAAATCTTACGAAAATT
13866585 TTT
66 TTT
* * * *
13866588 TCCTTGAGAACCTGAGATCTTCGCGAATTTAAAACCTATGTGAAATTTGAAATCTTACGAA
1 TCCTTGAGAACCTGAAATCTTCGCAAATATAAAACCTATGCGAAATTTGAAATCTTACGAA
13866649 TCTTCCATTC
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
68 52 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34
Consensus pattern (68 bp):
TCCTTGAGAACCTGAAATCTTCGCAAATATAAAACCTATGCGAAATTTGAAATCTTACGAAAATT
TTT
Found at i:13867307 original size:22 final size:22
Alignment explanation
Indices: 13867282--13867323 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
13867272 GAAGTATTAA
13867282 TTTTA-ATTTGATTTAATTTTTT
1 TTTTATATTTG-TTTAATTTTTT
*
13867304 TTTTATTTTTGTTTAATTTT
1 TTTTATATTTGTTTAATTTT
13867324 ACCTGTCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.19, C:0.00, G:0.05, T:0.76
Consensus pattern (22 bp):
TTTTATATTTGTTTAATTTTTT
Found at i:13867434 original size:46 final size:46
Alignment explanation
Indices: 13867365--13867457 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
13867355 GTTTGAAAAA
* * *
13867365 ACATTAAAGATTTTGTAGTAAATTTTAGTGCTTGATTTATGCAATT
1 ACATTAAAGATTTTGAAGTAAATTTCAATGCTTGATTTATGCAATT
13867411 ACATTAAAGATTTTGCAAG-AAATTTCAATGCTTGATTTATGCAATT
1 ACATTAAAGATTTTG-AAGTAAATTTCAATGCTTGATTTATGCAATT
13867457 A
1 A
13867458 ATGCACATTC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 41 0.95
47 2 0.05
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (46 bp):
ACATTAAAGATTTTGAAGTAAATTTCAATGCTTGATTTATGCAATT
Found at i:13867878 original size:28 final size:28
Alignment explanation
Indices: 13867846--13867925 Score: 108
Period size: 28 Copynumber: 2.8 Consensus size: 28
13867836 ATTCTTTCAT
*
13867846 TTAAA-ATAAAAACTTATTTAAATATAAA
1 TTAAATATAAAAATTTATTTAAATA-AAA
*
13867874 TTAAAGTATAAAAATTTATTTGAATAAAA
1 TTAAA-TATAAAAATTTATTTAAATAAAA
*
13867903 TAAAATATAAAAATTTATTTAAA
1 TTAAATATAAAAATTTATTTAAA
13867926 ACAAGTAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
28 22 0.48
29 7 0.15
30 17 0.37
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.38
Consensus pattern (28 bp):
TTAAATATAAAAATTTATTTAAATAAAA
Found at i:13867934 original size:28 final size:26
Alignment explanation
Indices: 13867851--13867937 Score: 84
Period size: 28 Copynumber: 3.0 Consensus size: 26
13867841 TTCATTTAAA
* *
13867851 ATAAAAACTTATTTAAATATAAATTAAAGT
1 ATAAAAATTTATTT-AA-A-AAA-TAAAAT
13867881 ATAAAAATTTATTTGAATAAAATAAAAT
1 ATAAAAATTTATTT-AA-AAAATAAAAT
13867909 ATAAAAATTTATTTAAAACAAGTAAAAT
1 ATAAAAATTTATTTAAAA-AA-TAAAAT
13867937 A
1 A
13867938 ATTTAGGAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
26 2 0.04
27 4 0.08
28 26 0.50
29 3 0.06
30 17 0.33
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (26 bp):
ATAAAAATTTATTTAAAAAATAAAAT
Found at i:13868121 original size:17 final size:17
Alignment explanation
Indices: 13868099--13868163 Score: 51
Period size: 17 Copynumber: 3.7 Consensus size: 17
13868089 TATTAATTTA
13868099 ATAATAAAAATATTTTT
1 ATAATAAAAATATTTTT
* *
13868116 ATAAT-ATAATATTTTAAC
1 ATAATAAAAATATTTT--T
* *
13868134 ATCTATAAATATATTTTT
1 AT-AATAAAAATATTTTT
*
13868152 ATAATTAAAATA
1 ATAATAAAAATA
13868164 AAATAATATA
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
16 9 0.26
17 12 0.34
18 4 0.11
19 2 0.06
20 8 0.23
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
ATAATAAAAATATTTTT
Found at i:13869286 original size:3 final size:3
Alignment explanation
Indices: 13869280--13869370 Score: 119
Period size: 3 Copynumber: 30.0 Consensus size: 3
13869270 TTTTTAGTAG
* *
13869280 TAA TAA TAA TAA TAA TAA TAA TAA AAA TAA TAA TAA TAA TAA TAA TAG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * *
13869328 TAG TAG TAG TAG TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13869371 ATTCATTTGG
Statistics
Matches: 83, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
3 81 0.98
4 2 0.02
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:13875050 original size:15 final size:15
Alignment explanation
Indices: 13875018--13875051 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
13875008 CAAAATAAGT
*
13875018 AAATAAATAAACTAA
1 AAATAAATAAAATAA
13875033 AAATAAATAATAATAA
1 AAATAAATAA-AATAA
13875049 AAA
1 AAA
13875052 AATATACAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (15 bp):
AAATAAATAAAATAA
Found at i:13877241 original size:16 final size:16
Alignment explanation
Indices: 13877203--13877264 Score: 79
Period size: 17 Copynumber: 3.8 Consensus size: 16
13877193 TACAATTCAA
13877203 AGATTTGTAAGACTTTC
1 AGATTTGTAAGA-TTTC
13877220 AGATTTGTAAGATTTC
1 AGATTTGTAAGATTTC
*
13877236 ATATTTGTAAGATTTTC
1 AGATTTGTAAGA-TTTC
* *
13877253 AGCTTCGTAAGA
1 AGATTTGTAAGA
13877265 ATTTTCATAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
16 15 0.38
17 25 0.62
ACGTcount: A:0.31, C:0.10, G:0.18, T:0.42
Consensus pattern (16 bp):
AGATTTGTAAGATTTC
Found at i:13877247 original size:33 final size:35
Alignment explanation
Indices: 13877205--13877275 Score: 101
Period size: 33 Copynumber: 2.1 Consensus size: 35
13877195 CAATTCAAAG
*
13877205 ATTTGTAAGACTTTCAGATTTGTAAG-A-TTTCAT
1 ATTTGTAAGACTTTCAGATTCGTAAGAATTTTCAT
* *
13877238 ATTTGTAAGATTTTCAGCTTCGTAAGAATTTTCAT
1 ATTTGTAAGACTTTCAGATTCGTAAGAATTTTCAT
13877273 ATT
1 ATT
13877276 CGCAATAATT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
33 23 0.70
34 1 0.03
35 9 0.27
ACGTcount: A:0.30, C:0.10, G:0.14, T:0.46
Consensus pattern (35 bp):
ATTTGTAAGACTTTCAGATTCGTAAGAATTTTCAT
Found at i:13877277 original size:18 final size:17
Alignment explanation
Indices: 13877209--13877277 Score: 68
Period size: 17 Copynumber: 4.1 Consensus size: 17
13877199 TCAAAGATTT
* * *
13877209 GTAAGACTTTCAGATTT
1 GTAAGATTTTCATATTC
*
13877226 GTAAGA-TTTCATATTT
1 GTAAGATTTTCATATTC
**
13877242 GTAAGATTTTCAGCTTC
1 GTAAGATTTTCATATTC
13877259 GTAAGAATTTTCATATTC
1 GTAAG-ATTTTCATATTC
13877277 G
1 G
13877278 CAATAATTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
16 15 0.34
17 18 0.41
18 11 0.25
ACGTcount: A:0.29, C:0.12, G:0.16, T:0.43
Consensus pattern (17 bp):
GTAAGATTTTCATATTC
Found at i:13877482 original size:114 final size:116
Alignment explanation
Indices: 13877309--13877517 Score: 307
Period size: 114 Copynumber: 1.8 Consensus size: 116
13877299 AATTTTAGCC
13877309 TTGCAAGAATTTGATTATCAAAATTTTAGATTCGCATGAACTCAAATTCACAAGAATTTTCAAG-
1 TTGCAAGAATTTGATTATCAAAATTTTAGATTCGCATGAACTCAAATTCACAAGAATTTT-AAGA
13877373 TTCA-A-GACACAAAGATTCACAAGAATTAAATATTCATAAAAATTTCAACT
65 TTCACATGACACAAAGATTCACAAGAATTAAATATTCATAAAAATTTCAACT
* * * * * * *
13877423 TTGCTAGAATTTGATTCTCAAAGTTTTAGATTCGTATGAACTTAGATTCACAAGAATTTTTAGAT
1 TTGCAAGAATTTGATTATCAAAATTTTAGATTCGCATGAACTCAAATTCACAAGAATTTTAAGAT
**
13877488 TCACATGACACAAAGATTCTTAAGAATTAA
66 TCACATGACACAAAGATTCACAAGAATTAA
13877518 GATTCGCATC
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
113 2 0.02
114 58 0.70
115 1 0.01
116 22 0.27
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (116 bp):
TTGCAAGAATTTGATTATCAAAATTTTAGATTCGCATGAACTCAAATTCACAAGAATTTTAAGAT
TCACATGACACAAAGATTCACAAGAATTAAATATTCATAAAAATTTCAACT
Found at i:13877685 original size:46 final size:46
Alignment explanation
Indices: 13877600--13877691 Score: 116
Period size: 46 Copynumber: 2.0 Consensus size: 46
13877590 CCAAAAAGTT
* * *
13877600 AAAGATTTTTATTTGAAAAACTTTAGGGATTTACTTCCAATATTTC
1 AAAGATTTTGATTTGAAAAAATTTAGGGATTTACATCCAATATTTC
*
13877646 AAAGATTTTGATTT-AAAAAATTATA-GTATTTCACATCCAATATTTC
1 AAAGATTTTGATTTGAAAAAATT-TAGGGATTT-ACATCCAATATTTC
13877692 TCATTTAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
45 12 0.30
46 28 0.70
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42
Consensus pattern (46 bp):
AAAGATTTTGATTTGAAAAAATTTAGGGATTTACATCCAATATTTC
Found at i:13877807 original size:21 final size:21
Alignment explanation
Indices: 13877780--13877827 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
13877770 TAGTTTCACC
*
13877780 TAAAAACTCTAAGATTCTCAT
1 TAAAAACTCAAAGATTCTCAT
*
13877801 TTAAAACTCAAAGATTCTCAT
1 TAAAAACTCAAAGATTCTCAT
13877822 TAAAAA
1 TAAAAA
13877828 ATTCTTAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.48, C:0.17, G:0.04, T:0.31
Consensus pattern (21 bp):
TAAAAACTCAAAGATTCTCAT
Found at i:13878067 original size:20 final size:20
Alignment explanation
Indices: 13878039--13878091 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
13878029 ATTATGATAA
*
13878039 TAATGATGCAAATGGTTTCT
1 TAATAATGCAAATGGTTTCT
13878059 TAATAATGCAAATGGTTTCT
1 TAATAATGCAAATGGTTTCT
13878079 TAATAATGCAAAT
1 TAATAATGCAAAT
13878092 ACAACAATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (20 bp):
TAATAATGCAAATGGTTTCT
Found at i:13879029 original size:9 final size:9
Alignment explanation
Indices: 13879012--13879049 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
13879002 TTCTATCTTG
*
13879012 TTTCACATT
1 TTTCTCATT
13879021 TTTCTCATT
1 TTTCTCATT
13879030 TTT-TCATT
1 TTTCTCATT
*
13879038 TTTTTCATT
1 TTTCTCATT
13879047 TTT
1 TTT
13879050 TTACTTATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
8 8 0.30
9 19 0.70
ACGTcount: A:0.13, C:0.16, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTCTCATT
Found at i:13879039 original size:17 final size:17
Alignment explanation
Indices: 13879017--13879050 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
13879007 TCTTGTTTCA
13879017 CATTTTTCTCATTTTTT
1 CATTTTTCTCATTTTTT
*
13879034 CATTTTTTTCATTTTTT
1 CATTTTTCTCATTTTTT
13879051 TACTTATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.74
Consensus pattern (17 bp):
CATTTTTCTCATTTTTT
Found at i:13879050 original size:9 final size:9
Alignment explanation
Indices: 13879017--13879051 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
13879007 TCTTGTTTCA
*
13879017 CATTTTTCT
1 CATTTTTTT
13879026 CA-TTTTTT
1 CATTTTTTT
13879034 CATTTTTTT
1 CATTTTTTT
13879043 CATTTTTTT
1 CATTTTTTT
13879052 ACTTATCATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.74
Consensus pattern (9 bp):
CATTTTTTT
Found at i:13881312 original size:13 final size:13
Alignment explanation
Indices: 13881294--13881318 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13881284 CGACTTGACC
13881294 ATTTTTGTTTTTA
1 ATTTTTGTTTTTA
13881307 ATTTTTGTTTTT
1 ATTTTTGTTTTT
13881319 CTTTTAGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.08, T:0.80
Consensus pattern (13 bp):
ATTTTTGTTTTTA
Found at i:13881991 original size:29 final size:29
Alignment explanation
Indices: 13881952--13882015 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
13881942 TGCATAGGTG
*
13881952 AATAC-ATATGTTAGTGATAAGAGATTAA
1 AATACAATATGTTAATGATAAGAGATTAA
***
13881980 AATACAATATGTTAATGATGCTAGATTAA
1 AATACAATATGTTAATGATAAGAGATTAA
13882009 AATACAA
1 AATACAA
13882016 CACACAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 5 0.16
29 26 0.84
ACGTcount: A:0.48, C:0.06, G:0.14, T:0.31
Consensus pattern (29 bp):
AATACAATATGTTAATGATAAGAGATTAA
Found at i:13884638 original size:16 final size:17
Alignment explanation
Indices: 13884607--13884639 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
13884597 TCCCAGATTA
*
13884607 AGATTGGTTTTATTTTG
1 AGATTGGTTGTATTTTG
13884624 AGATT-GTTGTATTTTG
1 AGATTGGTTGTATTTTG
13884640 TTTTTAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.18, C:0.00, G:0.24, T:0.58
Consensus pattern (17 bp):
AGATTGGTTGTATTTTG
Found at i:13889013 original size:15 final size:14
Alignment explanation
Indices: 13888980--13889012 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
13888970 TTATAATGGC
13888980 TTTTTCTTTCTTCT
1 TTTTTCTTTCTTCT
13888994 TTTTTCTTTTCTT-T
1 TTTTTC-TTTCTTCT
13889008 TTTTT
1 TTTTT
13889013 TAGTTTGACC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTCTTTCTTCT
Found at i:13890328 original size:16 final size:18
Alignment explanation
Indices: 13890296--13890331 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
13890286 ATTTTATGAG
13890296 AATTTGAAAAAATAATAA
1 AATTTGAAAAAATAATAA
13890314 AATTT-AAAAAA-AATAA
1 AATTTGAAAAAATAATAA
13890330 AA
1 AA
13890332 AAGATAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 6 0.33
18 5 0.28
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (18 bp):
AATTTGAAAAAATAATAA
Found at i:13890724 original size:22 final size:22
Alignment explanation
Indices: 13890680--13890724 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
13890670 AAAATAATAT
*
13890680 TTTATTATATTTATTTTTATCA
1 TTTATTATATTTAATTTTATCA
13890702 TTTATTATATTTAAATTTT-TCA
1 TTTATTATATTT-AATTTTATCA
13890724 T
1 T
13890725 AACTTGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTATTATATTTAATTTTATCA
Found at i:13890853 original size:22 final size:22
Alignment explanation
Indices: 13890822--13890864 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
13890812 ATTTTTTTGA
*
13890822 AAAAAAAAATTGTTTCAATTTC
1 AAAAAAAAATTCTTTCAATTTC
* *
13890844 AAAAATAAATTCTTTTAATTT
1 AAAAAAAAATTCTTTCAATTT
13890865 GTCTCTTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (22 bp):
AAAAAAAAATTCTTTCAATTTC
Found at i:13891922 original size:30 final size:30
Alignment explanation
Indices: 13891861--13891922 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 30
13891851 GTAAACCCAT
**** *
13891861 ATCTGCGGTAAGATTTGTTTGACCTGGAAA
1 ATCTGCGGTAAGATTTGCAAAACCTGCAAA
*
13891891 ATCTGCGGTAAGATTTGCAAAAGCTGCAAA
1 ATCTGCGGTAAGATTTGCAAAACCTGCAAA
13891921 AT
1 AT
13891923 AGTGCCGAAC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (30 bp):
ATCTGCGGTAAGATTTGCAAAACCTGCAAA
Found at i:13895721 original size:2 final size:2
Alignment explanation
Indices: 13895714--13895748 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
13895704 ATCTGATAGT
13895714 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13895749 GATTTAAACG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:13899511 original size:3 final size:3
Alignment explanation
Indices: 13899503--13899531 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
13899493 TATTTTCTAG
13899503 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
13899532 TATTAAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:13900465 original size:3 final size:3
Alignment explanation
Indices: 13900457--13900489 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
13900447 TGTTGAGAAT
*
13900457 TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
13900490 CAACAACAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:13900490 original size:9 final size:9
Alignment explanation
Indices: 13900457--13900510 Score: 63
Period size: 9 Copynumber: 6.0 Consensus size: 9
13900447 TGTTGAGAAT
*
13900457 TAATAATAA
1 TAATAACAA
*
13900466 TAATAATAA
1 TAATAACAA
13900475 TAATAACAA
1 TAATAACAA
13900484 TAATAACAA
1 TAATAACAA
* *
13900493 CAACAACAA
1 TAATAACAA
*
13900502 TAACAACAA
1 TAATAACAA
13900511 CCTTTTGGCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20
Consensus pattern (9 bp):
TAATAACAA
Found at i:13901692 original size:12 final size:12
Alignment explanation
Indices: 13901657--13901703 Score: 53
Period size: 12 Copynumber: 4.0 Consensus size: 12
13901647 TTTAAAAAAA
13901657 TTTTGTT-ATTT
1 TTTTGTTGATTT
*
13901668 TTTT-ATGAGTTT
1 TTTTGTTGA-TTT
13901680 TTTTGTTGATTT
1 TTTTGTTGATTT
*
13901692 TTGTGTTGATTT
1 TTTTGTTGATTT
13901704 ATTAATTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
10 1 0.03
11 5 0.17
12 21 0.70
13 3 0.10
ACGTcount: A:0.11, C:0.00, G:0.17, T:0.72
Consensus pattern (12 bp):
TTTTGTTGATTT
Found at i:13902580 original size:72 final size:72
Alignment explanation
Indices: 13902464--13902798 Score: 258
Period size: 72 Copynumber: 4.7 Consensus size: 72
13902454 ATGAATATTG
* * * * * * * *
13902464 TATTTTAAAGAT-AAAAACGTAGTAAATATTCAAA-CTATATTTTCAAAATTATGACATTTTAAC
1 TATTTTTAAGATAAAAAACATAATGAATGTTCAAATCTATATTTTTAAAATT-TTAAATTTTAAC
13902527 AAAAACTA
65 AAAAACTA
* * *
13902535 TATTTTTAAGATAAAAAACATAATGAATGTT-AAATCTATAGTTTCAAAATTTTGGAATTTTAAC
1 TATTTTTAAGATAAAAAACATAATGAATGTTCAAATCTATATTTTTAAAATTTT-AAATTTTAAC
* *
13902599 AAATACTGC
65 AAAAACT-A
* * * *
13902608 T-CTTTTAAGATAAAAAACACAATGAATGTTCAAA-CTATATTTTTGAAATTTTAAGATTATAAC
1 TATTTTTAAGATAAAAAACATAATGAATGTTCAAATCTATATTTTTAAAATTTTAA-ATTTTAAC
* *
13902671 AAAGATTA
65 AAAAACTA
* ** * * * *
13902679 CATTTTT-TTA-AAAAAATACAATGAATGTT-GAATCTATATTTTTAAAATTTTAAAATTTTAGC
1 TATTTTTAAGATAAAAAACATAATGAATGTTCAAATCTATATTTTTAAAATTTT-AAATTTTAAC
** *
13902741 AAACTCTG
65 AAAAACTA
* * * *
13902749 CATTTTTAAGATAAAAAAAATATTGAATGTTGAAAT-TATA-TTTTAAAATT
1 TATTTTTAAGATAAAAAACATAATGAATGTTCAAATCTATATTTTTAAAATT
13902799 CTAGAAAGTA
Statistics
Matches: 212, Mismatches: 40, Indels: 24
0.77 0.14 0.09
Matches are distributed among these distances:
69 2 0.01
70 52 0.25
71 30 0.14
72 121 0.57
73 7 0.03
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.39
Consensus pattern (72 bp):
TATTTTTAAGATAAAAAACATAATGAATGTTCAAATCTATATTTTTAAAATTTTAAATTTTAACA
AAAACTA
Found at i:13903086 original size:75 final size:75
Alignment explanation
Indices: 13902958--13903143 Score: 206
Period size: 75 Copynumber: 2.5 Consensus size: 75
13902948 AAACGTAACA
* * *
13902958 AATGTTCAAA-CTATATTTTCAAAATTCCAGAATTTTAATAAAAACTGT-GTTTTTAAGATTAAA
1 AATGTTCAAATCTATATTTTCAAAATTCTAGAATTTTAACAAAAACTGTATTTTTTAA-A--AAA
13903021 AAAAAACA-TAATG
63 AAAAAACACT-ATG
* ** *
13903034 GATG-T-AAATCTATATTTTCAAAATTCTAGAATTTTAACAAATTTCT-TATTTTTTAAAAATAA
1 AATGTTCAAATCTATATTTTCAAAATTCTAGAATTTTAACAAA-AACTGTATTTTTTAAAAAAAA
13903096 AAAACACTATG
65 AAAACACTATG
*
13903107 AATGTTCAAAT-TATATTTTCAAAATTTTAGAATTTTA
1 AATGTTCAAATCTATATTTTCAAAATTCTAGAATTTTA
13903144 GTAAAGATCA
Statistics
Matches: 95, Mismatches: 9, Indels: 14
0.81 0.08 0.12
Matches are distributed among these distances:
73 16 0.17
74 30 0.32
75 37 0.39
76 12 0.13
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (75 bp):
AATGTTCAAATCTATATTTTCAAAATTCTAGAATTTTAACAAAAACTGTATTTTTTAAAAAAAAA
AAACACTATG
Found at i:13903138 original size:74 final size:75
Alignment explanation
Indices: 13902958--13903241 Score: 204
Period size: 74 Copynumber: 3.9 Consensus size: 75
13902948 AAACGTAACA
* * *
13902958 AATGTTCAAACTATATTTTCAAAATTCCAGAATTTTAATAAAAACTGTGTTTTTAAGATTAAAAA
1 AATGTTCAAATTATATTTTCAAAATTCTAGAATTTTAACAAAAACTGTGTTTTTAAGA-TAAAAA
13903023 AAAACATAATG
65 AAAACATAATG
* ** * *
13903034 GATG-T-AAATCTATATTTTCAAAATTCTAGAATTTTAACAAATTTCT-TATTTTTTAA-A-AAT
1 AATGTTCAAAT-TATATTTTCAAAATTCTAGAATTTTAACAAA-AACTGT-GTTTTTAAGATAAA
13903094 AAAAAACACT-ATG
63 AAAAAACA-TAATG
* ** * **
13903107 AATGTTCAAATTATATTTTCAAAATTTTAGAATTTTAGTAAAGA-TCACGTTTTTAAGAT-AAAA
1 AATGTTCAAATTATATTTTCAAAATTCTAGAATTTTAACAAAAACT-GTGTTTTTAAGATAAAAA
*
13903170 AATAC--AATG
65 AAAACATAATG
*** *
13903179 AATGTT----TCTATATTTTCAAAATGT-T-GAAATTTTAACAAATTTTGCGTTTTTAAGATAAA
1 AATGTTCAAAT-TATATTTTCAAAAT-TCTAG-AATTTTAACAAAAACTGTGTTTTTAAGATAAA
13903238 AAAA
63 AAAA
13903242 GTATTAAATC
Statistics
Matches: 169, Mismatches: 23, Indels: 38
0.73 0.10 0.17
Matches are distributed among these distances:
68 2 0.01
69 37 0.22
70 8 0.05
72 10 0.06
73 23 0.14
74 41 0.24
75 36 0.21
76 12 0.07
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (75 bp):
AATGTTCAAATTATATTTTCAAAATTCTAGAATTTTAACAAAAACTGTGTTTTTAAGATAAAAAA
AAACATAATG
Found at i:13903945 original size:34 final size:34
Alignment explanation
Indices: 13903907--13904006 Score: 94
Period size: 34 Copynumber: 2.9 Consensus size: 34
13903897 CTGATTTTTG
*
13903907 ACTTGTAATTCAATTTCAGTCATTTTATTTTTCA
1 ACTTGTAGTTCAATTTCAGTCATTTTATTTTTCA
* * * * *
13903941 ACTTGTAGTTTAATCTTGA-TTATTTAATTTTTTA
1 ACTTGTAGTTCAAT-TTCAGTCATTTTATTTTTCA
** * *
13903975 ACTTACAGTTCAATTCCAGTCATATTATTTTT
1 ACTTGTAGTTCAATTTCAGTCATTTTATTTTT
13904007 TTACTTACGT
Statistics
Matches: 50, Mismatches: 14, Indels: 4
0.74 0.21 0.06
Matches are distributed among these distances:
33 2 0.04
34 45 0.90
35 3 0.06
ACGTcount: A:0.27, C:0.13, G:0.07, T:0.53
Consensus pattern (34 bp):
ACTTGTAGTTCAATTTCAGTCATTTTATTTTTCA
Found at i:13907211 original size:20 final size:20
Alignment explanation
Indices: 13907182--13907244 Score: 63
Period size: 22 Copynumber: 3.0 Consensus size: 20
13907172 TGATGACGTG
* **
13907182 ATATTAATTAAATTTTTTTT
1 ATATTTATTAAATTTTTTAA
13907202 ATATTTATTAATATTTTATTAA
1 ATATTTATTAA-ATTTT-TTAA
*
13907224 ATATTTATATATATTTTTTAA
1 ATATTTAT-TAAATTTTTTAA
13907245 TGACGTTAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
20 10 0.28
21 9 0.25
22 15 0.42
23 2 0.06
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
ATATTTATTAAATTTTTTAA
Found at i:13907426 original size:12 final size:11
Alignment explanation
Indices: 13907409--13907454 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
13907399 TTATATTTAT
13907409 ATAATTAATTAA
1 ATAATTAATT-A
13907421 ATAATTAATTA
1 ATAATTAATTA
13907432 ATAATTAA--A
1 ATAATTAATTA
13907441 AT--TTAATTA
1 ATAATTAATTA
13907450 ATAAT
1 ATAAT
13907455 CAAATCCACG
Statistics
Matches: 30, Mismatches: 0, Indels: 9
0.77 0.00 0.23
Matches are distributed among these distances:
7 4 0.13
9 6 0.20
11 10 0.33
12 10 0.33
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (11 bp):
ATAATTAATTA
Found at i:13907448 original size:18 final size:19
Alignment explanation
Indices: 13907414--13907459 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
13907404 TTTATATAAT
13907414 TAATTAAATAATTAATTAA
1 TAATTAAATAATTAATTAA
*
13907433 TAATTAAA-ATTTAATTAA
1 TAATTAAATAATTAATTAA
*
13907451 TAATCAAAT
1 TAATTAAAT
13907460 CCACGTATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 16 0.67
19 8 0.33
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (19 bp):
TAATTAAATAATTAATTAA
Found at i:13908594 original size:27 final size:28
Alignment explanation
Indices: 13908556--13908623 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 28
13908546 ATCCATTTAC
*
13908556 ATATTATTTTATTGTTAA-AATAATAAA
1 ATATTATTTTATTATTAATAATAATAAA
**
13908583 ATATTATTTTA-TATTAATAATTTTAAA
1 ATATTATTTTATTATTAATAATAATAAA
*
13908610 ATATTAATTTATTA
1 ATATTATTTTATTA
13908624 ATAAATTGTC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 5 0.14
27 28 0.80
28 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (28 bp):
ATATTATTTTATTATTAATAATAATAAA
Found at i:13923008 original size:17 final size:17
Alignment explanation
Indices: 13922979--13923022 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 17
13922969 ACCATGATAG
*
13922979 CCACCTTAAAACTTAAC
1 CCACCTAAAAACTTAAC
*
13922996 CCATCTAAAAACTTAAC
1 CCACCTAAAAACTTAAC
13923013 CCACCTAAAA
1 CCACCTAAAA
13923023 GAAACGTACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.20
Consensus pattern (17 bp):
CCACCTAAAAACTTAAC
Found at i:13924466 original size:28 final size:28
Alignment explanation
Indices: 13924435--13924491 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
13924425 CCATAGTGGT
13924435 CACAGTAATGATAACCAATTATCAAGTG
1 CACAGTAATGATAACCAATTATCAAGTG
13924463 CACAGTAATGATAACCAATTATCAAGTG
1 CACAGTAATGATAACCAATTATCAAGTG
13924491 C
1 C
13924492 GGGGAATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.25
Consensus pattern (28 bp):
CACAGTAATGATAACCAATTATCAAGTG
Found at i:13934607 original size:47 final size:47
Alignment explanation
Indices: 13934550--13934639 Score: 153
Period size: 47 Copynumber: 1.9 Consensus size: 47
13934540 ATCATAAAAA
* *
13934550 CTTGAATAATTATTTAATTTTTGTTTAAATACTCTTTTATATAAGTG
1 CTTGAATAATTATTAAATTTTTATTTAAATACTCTTTTATATAAGTG
*
13934597 CTTGAATAATTATTAAATTTTTATTTAAATGCTCTTTTATATA
1 CTTGAATAATTATTAAATTTTTATTTAAATACTCTTTTATATA
13934640 TTTAAGTCAA
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (47 bp):
CTTGAATAATTATTAAATTTTTATTTAAATACTCTTTTATATAAGTG
Found at i:13935733 original size:30 final size:28
Alignment explanation
Indices: 13935699--13935754 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 28
13935689 AGTCCAAATA
13935699 CACAACAAAAA-AGTTCAAAGAAAAAAAGGT
1 CACAACAAAAATA-TT-AAA-AAAAAAAGGT
13935729 CACAACAAAAATATTAAAAAAAAAAG
1 CACAACAAAAATATTAAAAAAAAAAG
13935755 CAAAATGAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 8 0.32
29 3 0.12
30 13 0.52
31 1 0.04
ACGTcount: A:0.68, C:0.12, G:0.09, T:0.11
Consensus pattern (28 bp):
CACAACAAAAATATTAAAAAAAAAAGGT
Found at i:13935738 original size:16 final size:16
Alignment explanation
Indices: 13935699--13935739 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
13935689 AGTCCAAATA
*
13935699 CACAAC-AAAAAAGTT
1 CACAACAAAAAAAGGT
*
13935714 CA-AAGAAAAAAAGGT
1 CACAACAAAAAAAGGT
13935729 CACAACAAAAA
1 CACAACAAAAA
13935740 TATTAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
14 2 0.10
15 12 0.57
16 7 0.33
ACGTcount: A:0.66, C:0.17, G:0.10, T:0.07
Consensus pattern (16 bp):
CACAACAAAAAAAGGT
Found at i:13937173 original size:69 final size:64
Alignment explanation
Indices: 13937088--13937239 Score: 187
Period size: 69 Copynumber: 2.3 Consensus size: 64
13937078 CCAATATTTT
* * * * *
13937088 TATATCACATAATACTTTTGTTAATAATTAATTGAAAATTACTAAAGTTACTACAAAAGATGATA
1 TATATCAAATAATACTTTTATTAATAAGTAATTG-AAATTAATAAA-TTACT--AAAA-ATGACA
13937153 ATAA
61 ATAA
*
13937157 TATATCAAATAATACTTTTATTAATAAGTAATTGAAATTAATAAATTACTAAAAATGACCATAA
1 TATATCAAATAATACTTTTATTAATAAGTAATTGAAATTAATAAATTACTAAAAATGACAATAA
* *
13937221 AATATCAAATAAGACTTTT
1 TATATCAAATAATACTTTT
13937240 TAAATTGATA
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
64 25 0.33
65 4 0.05
67 5 0.07
68 10 0.13
69 31 0.41
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.36
Consensus pattern (64 bp):
TATATCAAATAATACTTTTATTAATAAGTAATTGAAATTAATAAATTACTAAAAATGACAATAA
Found at i:13937521 original size:77 final size:76
Alignment explanation
Indices: 13937429--13937584 Score: 269
Period size: 77 Copynumber: 2.0 Consensus size: 76
13937419 ATTGACTTGT
13937429 TTATGTATTTATTTATATAGTTATATATTTAAATTGTTATGTTTTAATTTTTT-TATATATGTAA
1 TTATGTATTTATTTATATAGTTATATATTTAAATTGTTATGTTTT--TTTTTTATATATATGTAA
*
13937493 TTAACTCATGTGA
64 TTAACTCATGTAA
*
13937506 TTATTTATTTATTTATATAGTTATATATTTAAATTGTTATGTTTTTTTTTTATATATATGTAATT
1 TTATGTATTTATTTATATAGTTATATATTTAAATTGTTATGTTTTTTTTTTATATATATGTAATT
13937571 AACTCATGTAA
66 AACTCATGTAA
13937582 TTA
1 TTA
13937585 ATTAATGTAT
Statistics
Matches: 76, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
75 6 0.08
76 26 0.34
77 44 0.58
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (76 bp):
TTATGTATTTATTTATATAGTTATATATTTAAATTGTTATGTTTTTTTTTTATATATATGTAATT
AACTCATGTAA
Found at i:13937607 original size:76 final size:76
Alignment explanation
Indices: 13937450--13937607 Score: 212
Period size: 77 Copynumber: 2.1 Consensus size: 76
13937440 TTTATATAGT
* * *
13937450 TATATATTTAAATTGTTATGTTTTAATTTTTTTATATATGTAATTAACTCATGTGATTATTTATT
1 TATATATTTAAATTGTTATGTTTT-ATTTTTTTATATATGTAATTAACTCATGTAATTATTAATG
** **
13937515 TATTTATATAGT
65 TATAAATATAAA
13937527 TATATATTTAAATTGTTATGTTTT-TTTTTTATATATATGTAATTAACTCATGTAATTAATTAAT
1 TATATATTTAAATTGTTATGTTTTATTTTTT-TATATATGTAATTAACTCATGTAATT-ATTAAT
13937591 GTATAAATA-AAA
64 GTATAAATATAAA
13937603 TATAT
1 TATAT
13937608 TTATTGATGT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
75 6 0.08
76 31 0.43
77 35 0.49
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (76 bp):
TATATATTTAAATTGTTATGTTTTATTTTTTTATATATGTAATTAACTCATGTAATTATTAATGT
ATAAATATAAA
Found at i:13938705 original size:16 final size:17
Alignment explanation
Indices: 13938684--13938717 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
13938674 TTTTTTTTTT
13938684 TGGGGGGGGGGG-GGGG
1 TGGGGGGGGGGGTGGGG
13938700 TGGGGGGGGGGGTGGGG
1 TGGGGGGGGGGGTGGGG
13938717 T
1 T
13938718 TTGGCATGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.00, C:0.00, G:0.88, T:0.12
Consensus pattern (17 bp):
TGGGGGGGGGGGTGGGG
Found at i:13938706 original size:12 final size:12
Alignment explanation
Indices: 13938685--13938716 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
13938675 TTTTTTTTTT
13938685 GGGG-GGGGGGG
1 GGGGTGGGGGGG
13938696 GGGGTGGGGGGG
1 GGGGTGGGGGGG
13938708 GGGGTGGGG
1 GGGGTGGGG
13938717 TTTGGCATGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.00, C:0.00, G:0.94, T:0.06
Consensus pattern (12 bp):
GGGGTGGGGGGG
Found at i:13938707 original size:17 final size:17
Alignment explanation
Indices: 13938685--13938717 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13938675 TTTTTTTTTT
13938685 GGGGGGGGGGGGGGGTG
1 GGGGGGGGGGGGGGGTG
*
13938702 GGGGGGGGGGTGGGGT
1 GGGGGGGGGGGGGGGT
13938718 TTGGCATGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.91, T:0.09
Consensus pattern (17 bp):
GGGGGGGGGGGGGGGTG
Found at i:13939417 original size:29 final size:32
Alignment explanation
Indices: 13939385--13939465 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 32
13939375 TAACAAAATA
13939385 TTTAATATAATATTTAAATATTA-AAA-TT-T
1 TTTAATATAATATTTAAATATTATAAATTTAT
13939414 TTTAATATAATA-TTAAA-ATTATAAATTTAT
1 TTTAATATAATATTTAAATATTATAAATTTAT
*
13939444 TGATTAATATTATATTTAAATA
1 T--TTAATATAATATTTAAATA
13939466 ATTTTTTATT
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
27 4 0.09
28 8 0.18
29 14 0.32
30 2 0.05
32 10 0.23
33 5 0.11
34 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (32 bp):
TTTAATATAATATTTAAATATTATAAATTTAT
Found at i:13950206 original size:13 final size:12
Alignment explanation
Indices: 13950184--13950213 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
13950174 ATTTTAATTT
13950184 GTTTTTTGTTGA
1 GTTTTTTGTTGA
13950196 GTTTGTTTGTTGA
1 GTTT-TTTGTTGA
13950209 GTTTT
1 GTTTT
13950214 GGGTTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.07, C:0.00, G:0.27, T:0.67
Consensus pattern (12 bp):
GTTTTTTGTTGA
Found at i:13955035 original size:3 final size:3
Alignment explanation
Indices: 13955027--13955087 Score: 61
Period size: 3 Copynumber: 20.3 Consensus size: 3
13955017 GAAAAAGAAA
* * * *
13955027 ATG ATG ATG ATG ATG AT- ATTA ACG ATG ATG ATA ATG ATG ATG CTG
1 ATG ATG ATG ATG ATG ATG A-TG ATG ATG ATG ATG ATG ATG ATG ATG
*
13955072 TTG ATG ATG ATG ATG A
1 ATG ATG ATG ATG ATG A
13955088 ATTTGCTTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
2 1 0.02
3 46 0.96
4 1 0.02
ACGTcount: A:0.34, C:0.03, G:0.28, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:13955094 original size:24 final size:24
Alignment explanation
Indices: 13955027--13955094 Score: 63
Period size: 24 Copynumber: 3.0 Consensus size: 24
13955017 GAAAAAGAAA
**
13955027 ATGATGATGATGATGATATTAAC-G
1 ATGATGATGATGATGA-ATTTGCTG
*
13955051 ATGATGATAATGATG-A--TGCTG
1 ATGATGATGATGATGAATTTGCTG
*
13955072 TTGATGATGATGATGAATTTGCT
1 ATGATGATGATGATGAATTTGCT
13955095 TCTTCTAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
20 1 0.03
21 14 0.40
22 2 0.06
24 18 0.51
ACGTcount: A:0.32, C:0.04, G:0.26, T:0.37
Consensus pattern (24 bp):
ATGATGATGATGATGAATTTGCTG
Found at i:13956681 original size:19 final size:19
Alignment explanation
Indices: 13956657--13956700 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
13956647 GAGATTTGCT
13956657 TTGTGAAT-CTAGTTATGTA
1 TTGTGAATAC-AGTTATGTA
*
13956676 TTGTGATTACAGTTATGTA
1 TTGTGAATACAGTTATGTA
13956695 TTGTGA
1 TTGTGA
13956701 TTTTGATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 22 0.96
20 1 0.04
ACGTcount: A:0.25, C:0.05, G:0.23, T:0.48
Consensus pattern (19 bp):
TTGTGAATACAGTTATGTA
Found at i:13957773 original size:12 final size:12
Alignment explanation
Indices: 13957753--13957787 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
13957743 ATTTTTATTG
*
13957753 TTACTGATGGAT
1 TTACCGATGGAT
13957765 TTACCGATGGAT
1 TTACCGATGGAT
*
13957777 TTACCAATGGA
1 TTACCGATGGA
13957788 AAAAATTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (12 bp):
TTACCGATGGAT
Found at i:13961739 original size:17 final size:18
Alignment explanation
Indices: 13961717--13961755 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
13961707 TTTAACTATT
13961717 ATTTTA-TA-ATTTTTATA
1 ATTTTATTATATTTTTA-A
13961734 ATTTTATTATATTTTTAA
1 ATTTTATTATATTTTTAA
13961752 ATTT
1 ATTT
13961756 ATTTTTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 7 0.35
19 7 0.35
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTATTATATTTTTAA
Found at i:13961758 original size:17 final size:20
Alignment explanation
Indices: 13961720--13961755 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
13961710 AACTATTATT
13961720 TTATAATTTTTATAATTTTA
1 TTATAATTTTTATAATTTTA
13961740 TTAT-ATTTTTA-AATTT
1 TTATAATTTTTATAATTT
13961756 ATTTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.31
19 7 0.44
20 4 0.25
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATAATTTTTATAATTTTA
Found at i:13963473 original size:15 final size:16
Alignment explanation
Indices: 13963453--13963492 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
13963443 GTATTTTATT
13963453 TTATTTTTATT-TTTA
1 TTATTTTTATTGTTTA
13963468 TTA-TTTTATTGTTTA
1 TTATTTTTATTGTTTA
13963483 TTATTCTTTA
1 TTATT-TTTA
13963493 AATATATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 7 0.32
15 10 0.45
16 1 0.05
17 4 0.18
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.75
Consensus pattern (16 bp):
TTATTTTTATTGTTTA
Found at i:13963492 original size:25 final size:25
Alignment explanation
Indices: 13963444--13963492 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
13963434 CAACTTCAGG
* *
13963444 TATTTTATTTTATTTTTATTTTTAT
1 TATTTTATTGTATTATTATTTTTAT
13963469 TATTTTATTGT-TTATTATTCTTTA
1 TATTTTATTGTATTATTATT-TTTA
13963493 AATATATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (25 bp):
TATTTTATTGTATTATTATTTTTAT
Found at i:13964878 original size:19 final size:19
Alignment explanation
Indices: 13964854--13964905 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 19
13964844 AAGGTTCACA
*
13964854 ATTATTTATTTATTTGTTT
1 ATTATTTATTTATTTGTCT
* *
13964873 ATTATTTGTTTGTTTGTCT
1 ATTATTTATTTATTTGTCT
*
13964892 ATT-TTCATTTATTT
1 ATTATTTATTTATTT
13964906 CATGCATCTC
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 8 0.30
19 19 0.70
ACGTcount: A:0.17, C:0.04, G:0.08, T:0.71
Consensus pattern (19 bp):
ATTATTTATTTATTTGTCT
Found at i:13966459 original size:41 final size:40
Alignment explanation
Indices: 13966381--13966457 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 40
13966371 TTAATTTTAA
13966381 TTAAAAATATAAAAAATATAAAATAATAAGAATAAAATTT
1 TTAAAAATATAAAAAATATAAAATAATAAGAATAAAATTT
* *
13966421 TTAAAAATTATAATAAAA-ATTAAATAGTAA-AATAAAA
1 TTAAAAA-TATAA-AAAATATAAAATAATAAGAATAAAA
13966458 ATAAAAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 14 0.42
41 15 0.45
42 4 0.12
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (40 bp):
TTAAAAATATAAAAAATATAAAATAATAAGAATAAAATTT
Found at i:13967739 original size:54 final size:53
Alignment explanation
Indices: 13967513--13967761 Score: 196
Period size: 54 Copynumber: 4.6 Consensus size: 53
13967503 TCCAACTTGC
* * * * * *
13967513 CCCTAGCACATTTATCTATTGCATTAAGGCTTTGCATCAAAATGCCCAACGTG
1 CCCTTGCACCTTTATCTATTGCATTAAGGCTTTACACCAACATGCCCAATGTG
* * *
13967566 CCCTTGACATCTTTATCTATTGCATTAAAG-TTCCACACCAACATGCCCAATGTG
1 CCCTTG-CACCTTTATCTATTGCATTAAGGCTT-TACACCAACATGCCCAATGTG
* ** ** * * **
13967620 CCCTTGGCACCTTTATCCATTGTGTTAAAACTCTACACTAACATGCTTAATGTG
1 CCCTT-GCACCTTTATCTATTGCATTAAGGCTTTACACCAACATGCCCAATGTG
* * **
13967674 CCCATGTCACCTTTATCTATTGCATTAAGGCTTTGCACCAACACACCCAATGTG
1 CCCTTG-CACCTTTATCTATTGCATTAAGGCTTTACACCAACATGCCCAATGTG
* * * *
13967728 CCTTTAGCACCTCTA-CTTAATGCATTAAGACTTT
1 CCCTT-GCACCTTTATC-TATTGCATTAAGGCTTT
13967762 CCAAACAGCA
Statistics
Matches: 152, Mismatches: 37, Indels: 13
0.75 0.18 0.06
Matches are distributed among these distances:
53 9 0.06
54 140 0.92
55 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (53 bp):
CCCTTGCACCTTTATCTATTGCATTAAGGCTTTACACCAACATGCCCAATGTG
Found at i:13972463 original size:17 final size:17
Alignment explanation
Indices: 13972441--13972474 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
13972431 TACCTACCTT
13972441 AATTTCTAAGTTATCTA
1 AATTTCTAAGTTATCTA
13972458 AATTTCTAAGTTATCTA
1 AATTTCTAAGTTATCTA
13972475 CACATTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (17 bp):
AATTTCTAAGTTATCTA
Found at i:13973727 original size:52 final size:51
Alignment explanation
Indices: 13973641--13973797 Score: 201
Period size: 52 Copynumber: 3.0 Consensus size: 51
13973631 TATAACCATA
*
13973641 CAAACTTG-CTCATTAAGAATCCCTCTTCTCTTAGAATTCTTCTCTTGTAAGT
1 CAAACTTGCCT-ATTAAGAAT-CCTCTTCTCTTAGAATTCTTCTCTTGCAAGT
* *
13973693 CAAACTTGCCTATTAAGAATCCAT-TTCCTTTTAGAATCCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCC-TCTT-CTCTTAGAATTCTTCTCTTGCAAGT
* * *
13973745 CAAACTTACCTATTAAGAATCCTCTTTCTCTTGGAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCTC-TTCTCTTAGAATTCTTCTCTTGCAAGT
13973797 C
1 C
13973798 TTCTTATCCA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
51 5 0.05
52 83 0.90
53 4 0.04
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (51 bp):
CAAACTTGCCTATTAAGAATCCTCTTCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:13973838 original size:11 final size:11
Alignment explanation
Indices: 13973822--13973852 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
13973812 GCAATATCTG
13973822 ACAAATCTCAA
1 ACAAATCTCAA
13973833 ACAAATCTCAA
1 ACAAATCTCAA
13973844 ACAAATCTC
1 ACAAATCTC
13973853 TTATGGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:13974267 original size:31 final size:31
Alignment explanation
Indices: 13974189--13974272 Score: 116
Period size: 31 Copynumber: 2.7 Consensus size: 31
13974179 TTCAAACCTT
* * *
13974189 CAGCTTTGATACCACTTGGTGGAGAACACCA
1 CAGCTCTGATACCATTTGTTGGAGAACACCA
13974220 CAGCTCTGATACCATTTGTT-GAGGAACACCA
1 CAGCTCTGATACCATTTGTTGGA-GAACACCA
*
13974251 TAGCTCTGATACCATTTGTTGG
1 CAGCTCTGATACCATTTGTTGG
13974273 GCTAAAAGCC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
30 2 0.04
31 44 0.94
32 1 0.02
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (31 bp):
CAGCTCTGATACCATTTGTTGGAGAACACCA
Found at i:13974843 original size:52 final size:51
Alignment explanation
Indices: 13974757--13974913 Score: 201
Period size: 52 Copynumber: 3.0 Consensus size: 51
13974747 TATAACCATA
*
13974757 CAAACTTG-CTCATTAAGAATCCCTCTTCTCTTAGAATTCTTCTCTTGTAAGT
1 CAAACTTGCCT-ATTAAGAAT-CCTCTTCTCTTAGAATTCTTCTCTTGCAAGT
* *
13974809 CAAACTTGCCTATTAAGAATCCAT-TTCCTTTTAGAATCCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCC-TCTT-CTCTTAGAATTCTTCTCTTGCAAGT
* * *
13974861 CAAACTTACCTATTAAGAATCCTCTTTCTCTTGGAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCTC-TTCTCTTAGAATTCTTCTCTTGCAAGT
13974913 C
1 C
13974914 TTCTTATCCA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
51 5 0.05
52 83 0.90
53 4 0.04
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (51 bp):
CAAACTTGCCTATTAAGAATCCTCTTCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:13975917 original size:52 final size:52
Alignment explanation
Indices: 13975831--13975987 Score: 194
Period size: 52 Copynumber: 3.0 Consensus size: 52
13975821 TATAACCATA
* *
13975831 CAAACTTG-CTCATTAAGAATCCCTCTTCTCTTAGAATTCTTCTCTTGTAAGT
1 CAAACTTGCCT-ATTAAGAATCCATCTTCTCTTAGAATTCTTCTCTTGCAAGT
*
13975883 CAAACTTGCCTATTAAGAATCCAT-TTCCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCATCTT-CTCTTAGAATTCTTCTCTTGCAAGT
* * * * *
13975935 CAAACTTACCTATTAAGAAT-CTTCTTTCTCTTGGAATTTTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAATCCATC-TTCTCTTAGAATTCTTCTCTTGCAAGT
13975987 C
1 C
13975988 TTCTTATCCA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
51 4 0.04
52 84 0.91
53 4 0.04
ACGTcount: A:0.25, C:0.23, G:0.10, T:0.42
Consensus pattern (52 bp):
CAAACTTGCCTATTAAGAATCCATCTTCTCTTAGAATTCTTCTCTTGCAAGT
Found at i:13976028 original size:11 final size:11
Alignment explanation
Indices: 13976012--13976053 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
13976002 ACAATAACTG
*
13976012 ACAAATCCCAA
1 ACAAATCTCAA
*
13976023 ACAAATCTCTA
1 ACAAATCTCAA
13976034 ACAAATCTCAA
1 ACAAATCTCAA
13976045 ACAAATCTC
1 ACAAATCTC
13976054 TTATGGGATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:13976040 original size:22 final size:22
Alignment explanation
Indices: 13976012--13976054 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
13976002 ACAATAACTG
13976012 ACAAATCCCAAACAAATCTCTA
1 ACAAATCCCAAACAAATCTCTA
*
13976034 ACAAATCTCAAACAAATCTCT
1 ACAAATCCCAAACAAATCTCT
13976055 TATGGGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (22 bp):
ACAAATCCCAAACAAATCTCTA
Found at i:13980432 original size:17 final size:17
Alignment explanation
Indices: 13980410--13980449 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
13980400 TTTGATAATT
**
13980410 AAAATAAATCTATTATA
1 AAAATAAATAAATTATA
*
13980427 AAAATATATAAATTATA
1 AAAATAAATAAATTATA
13980444 AAAATA
1 AAAATA
13980450 TTTTACAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (17 bp):
AAAATAAATAAATTATA
Found at i:13981648 original size:3 final size:3
Alignment explanation
Indices: 13981640--13981684 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
13981630 AACACATCAT
13981640 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
13981685 TATTACCTAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:13984639 original size:23 final size:23
Alignment explanation
Indices: 13984613--13984656 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
13984603 TCAATATTTT
13984613 TATA-AAAAATATTTATTTAAAAA
1 TATATAAAAA-ATTTATTTAAAAA
*
13984636 TATATACAAAATTTATTTAAA
1 TATATAAAAAATTTATTTAAA
13984657 TTTTATATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
TATATAAAAAATTTATTTAAAAA
Found at i:13985259 original size:24 final size:26
Alignment explanation
Indices: 13985214--13985267 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 26
13985204 TATTTATTTT
*
13985214 ATAATAAAATATAATTCAATTATTAAG
1 ATAATAAAATATAATTCAATTAAT-AG
*
13985241 ATAAT-AAATAT-ATT-TATTAATAG
1 ATAATAAAATATAATTCAATTAATAG
13985264 ATAA
1 ATAA
13985268 ACTAATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
23 6 0.24
24 5 0.20
25 3 0.12
26 6 0.24
27 5 0.20
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.39
Consensus pattern (26 bp):
ATAATAAAATATAATTCAATTAATAG
Found at i:13985425 original size:15 final size:15
Alignment explanation
Indices: 13985405--13985437 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
13985395 TTAATTTGAA
13985405 AATATAAAA-AATTAT
1 AATATAAAATAA-TAT
13985420 AATATAAAATAATAT
1 AATATAAAATAATAT
13985435 AAT
1 AAT
13985438 TAAGTTTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
AATATAAAATAATAT
Found at i:13987173 original size:21 final size:20
Alignment explanation
Indices: 13987147--13987197 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
13987137 GTACCAATCA
*
13987147 ATCCCTTTTTTAGGTGATTG
1 ATCCCTTTTCTAGGTGATTG
** *
13987167 ATCCCCTAGTCTGGGTGATTG
1 AT-CCCTTTTCTAGGTGATTG
13987188 ATCCCTTTTC
1 ATCCCTTTTC
13987198 AAATCCTAGA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.14, C:0.24, G:0.20, T:0.43
Consensus pattern (20 bp):
ATCCCTTTTCTAGGTGATTG
Found at i:13995950 original size:21 final size:21
Alignment explanation
Indices: 13995926--13996117 Score: 139
Period size: 21 Copynumber: 9.2 Consensus size: 21
13995916 ATAGTACAAC
*
13995926 TAAATATTAATTTAATCATAT
1 TAAATATTAATTTAATAATAT
13995947 TAAATATTAA-TTAATAATAT
1 TAAATATTAATTTAATAATAT
** *
13995967 TTTATATTCATTTAATAATAT
1 TAAATATTAATTTAATAATAT
*
13995988 CAATAGCAATATTAATTTAATATTAT
1 ---TA--AATATTAATTTAATAATAT
*
13996014 TCAATATTAATTTAATAATAT
1 TAAATATTAATTTAATAATAT
* *
13996035 T--AT-CT-ATTTTATAATAT
1 TAAATATTAATTTAATAATAT
* * * *
13996052 TATATATTAATTAAATCATGT
1 TAAATATTAATTTAATAATAT
13996073 TAAATATTCAATTTAAT-A-A-
1 TAAATATT-AATTTAATAATAT
* * *
13996092 CAAATATTAATTAAATAATCT
1 TAAATATTAATTTAATAATAT
13996113 TAAAT
1 TAAAT
13996118 CTTTTAAGCT
Statistics
Matches: 133, Mismatches: 24, Indels: 28
0.72 0.13 0.15
Matches are distributed among these distances:
17 12 0.09
18 8 0.06
19 12 0.09
20 17 0.13
21 59 0.44
22 7 0.05
23 1 0.01
24 1 0.01
26 16 0.12
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.47
Consensus pattern (21 bp):
TAAATATTAATTTAATAATAT
Found at i:13995965 original size:67 final size:67
Alignment explanation
Indices: 13995894--13996035 Score: 177
Period size: 67 Copynumber: 2.1 Consensus size: 67
13995884 TATTAAATGT
13995894 TAATATTTTA-ATTAATATTAAT-ATAGTACAACTA-AATATTAATTTAATCA-TATTAAATATT
1 TAATATTTTATATTAAT-TTAATAATA-T-CAA-TACAATATTAATTTAAT-ATTATTAAATATT
13995955 AA-TTAA
61 AATTTAA
* *
13995961 TAATATTTTATATTCATTTAATAATATCAATAGCAATATTAATTTAATATTATTCAATATTAATT
1 TAATATTTTATATTAATTTAATAATATCAATA-CAATATTAATTTAATATTATTAAATATTAATT
13996026 TAA
65 TAA
13996029 TAATATT
1 TAATATT
13996036 ATCTATTTTA
Statistics
Matches: 67, Mismatches: 2, Indels: 11
0.84 0.03 0.14
Matches are distributed among these distances:
65 2 0.03
66 4 0.06
67 42 0.63
68 19 0.28
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.47
Consensus pattern (67 bp):
TAATATTTTATATTAATTTAATAATATCAATACAATATTAATTTAATATTATTAAATATTAATTT
AA
Found at i:13996048 original size:17 final size:17
Alignment explanation
Indices: 13996023--13996059 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
13996013 TTCAATATTA
*
13996023 ATTTAATAATATTATCT
1 ATTTAATAATATTATAT
*
13996040 ATTTTATAATATTATAT
1 ATTTAATAATATTATAT
13996057 ATT
1 ATT
13996060 AATTAAATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTAATAATATTATAT
Found at i:13996108 original size:18 final size:19
Alignment explanation
Indices: 13996074--13996109 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
13996064 AAATCATGTT
*
13996074 AAATATTCAATTTAATAAC
1 AAATATTCAATTAAATAAC
13996093 AAATATT-AATTAAATAA
1 AAATATTCAATTAAATAA
13996110 TCTTAAATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
AAATATTCAATTAAATAAC
Found at i:13996296 original size:14 final size:15
Alignment explanation
Indices: 13996279--13996325 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 15
13996269 CTATTTTAGC
13996279 AATATTTAATATTA-
1 AATATTTAATATTAT
* *
13996293 AATATTAAATA-AAT
1 AATATTTAATATTAT
*
13996307 AATATTTAATATTTT
1 AATATTTAATATTAT
13996322 AATA
1 AATA
13996326 ATATTTAGAC
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
13 1 0.04
14 20 0.77
15 5 0.19
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATATTTAATATTAT
Found at i:13996484 original size:57 final size:57
Alignment explanation
Indices: 13996411--13996753 Score: 262
Period size: 57 Copynumber: 6.1 Consensus size: 57
13996401 AGACATTAAG
* * ** * *
13996411 TTTAACAATGTTTTAATAGGAAATATTAATTTAACAATATTTAGTATTTCATATTAT
1 TTTAATAATATTTTAATACTAAATATTAATTTAATAATATTTAATATTTCATATTAT
* * * * * *
13996468 TTTAATAATATTTTAATAATAAATTTTAATGTAATAATATATAAATAATTTAATAATA-
1 TTTAATAATATTTTAATACTAAATATTAATTTAATAATAT-TTAAT-ATTTCATATTAT
** * * * * *
13996526 TTT-ATGTTTATTTTATTATTAAATATTAA-GT--T--T-TTTAAAATTTGATATTAT
1 TTTAAT-AATATTTTAATACTAAATATTAATTTAATAATATTTAATATTTCATATTAT
* * *
13996577 TTAAATAATATTTTAATACTAAATA-TATTTTAATAATATTGTAATATTTGATATTAT
1 TTTAATAATATTTTAATACTAAATATTAATTTAATAATATT-TAATATTTCATATTAT
* *
13996634 TTTAATAATATTTT-ATACTAAATATTAATTTAGTAATATTTTAATATTT-AGTATTAC
1 TTTAATAATATTTTAATACTAAATATTAATTTAATAATA-TTTAATATTTCA-TATTAT
* ** * *
13996691 TTTAAT-ATGATTTTAATATTTTATA-TATTTTAATAATATTTGAATATTACATATTAT
1 TTTAATAAT-ATTTTAATACTAAATATTAATTTAATAATATTT-AATATTTCATATTAT
13996748 TTTAAT
1 TTTAAT
13996754 TGTACTTTGT
Statistics
Matches: 228, Mismatches: 39, Indels: 38
0.75 0.13 0.12
Matches are distributed among these distances:
50 11 0.05
51 21 0.09
52 3 0.01
53 2 0.01
55 2 0.01
56 18 0.08
57 128 0.56
58 34 0.15
59 9 0.04
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.52
Consensus pattern (57 bp):
TTTAATAATATTTTAATACTAAATATTAATTTAATAATATTTAATATTTCATATTAT
Found at i:13996606 original size:17 final size:18
Alignment explanation
Indices: 13996578--13996611 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
13996568 TGATATTATT
13996578 TAAATAATATTTTAATAC
1 TAAATAATATTTTAATAC
13996596 TAAAT-ATATTTTAATA
1 TAAATAATATTTTAATA
13996612 ATATTGTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (18 bp):
TAAATAATATTTTAATAC
Found at i:13996614 original size:28 final size:29
Alignment explanation
Indices: 13996570--13996753 Score: 196
Period size: 28 Copynumber: 6.4 Consensus size: 29
13996560 TTAAAATTTG
* *
13996570 ATATTATTTAAATAATATTTTAATACTAA
1 ATATTATTTTAATAATATTTTAATATTAA
* **
13996599 ATA-TATTTTAATAATATTGTAATATTTG
1 ATATTATTTTAATAATATTTTAATATTAA
*
13996627 ATATTATTTTAATAATATTTT-ATACTAA
1 ATATTATTTTAATAATATTTTAATATTAA
* * *
13996655 ATATTAATTTAGTAATATTTTAATATTTA
1 ATATTATTTTAATAATATTTTAATATTAA
* * **
13996684 GTATTACTTTAAT-ATGATTTTAATATTTT
1 ATATTATTTTAATAAT-ATTTTAATATTAA
* *
13996713 ATA-TATTTTAATAATATTTGAATATTAC
1 ATATTATTTTAATAATATTTTAATATTAA
13996741 ATATTATTTTAAT
1 ATATTATTTTAAT
13996754 TGTACTTTGT
Statistics
Matches: 128, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
28 69 0.54
29 59 0.46
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (29 bp):
ATATTATTTTAATAATATTTTAATATTAA
Found at i:13996682 original size:18 final size:18
Alignment explanation
Indices: 13996661--13996738 Score: 68
Period size: 18 Copynumber: 4.2 Consensus size: 18
13996651 CTAAATATTA
13996661 ATTTAGTAATATTTTAAT
1 ATTTAGTAATATTTTAAT
* *
13996679 ATTTAGTATTACTTTAAT
1 ATTTAGTAATATTTTAAT
*
13996697 ATGATT-TTAATATTTTATAT
1 AT--TTAGTAATATTTTA-AT
* *
13996717 ATTTTAATAATATTTGAAT
1 A-TTTAGTAATATTTTAAT
13996736 ATT
1 ATT
13996739 ACATATTATT
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
18 20 0.42
19 13 0.27
20 14 0.29
21 1 0.02
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.56
Consensus pattern (18 bp):
ATTTAGTAATATTTTAAT
Found at i:13996768 original size:57 final size:54
Alignment explanation
Indices: 13996599--13996790 Score: 136
Period size: 57 Copynumber: 3.4 Consensus size: 54
13996589 TTAATACTAA
* * ** * **
13996599 ATATATTTTAATAATA-TTGTAATATTTGATATTATTTTAATAATATTTTATACTAA
1 ATATAATTTAATAATATTTG-AATA-TTAATATTATTTTAATTGTATTTT-TATTTT
* * * *
13996655 ATATTAATTTAGTAATATTTTAATATTTAGTATTACTTTAATATG-ATTTTAATATTTT
1 ATA-TAATTTAATAATATTTGAATA-TTAATATTATTTTAAT-TGTATTTT--TATTTT
*
13996713 ATATATTTTAATAATATTTGAATATTACATATTATTTTAATTGTACTTTGTTATTTT
1 ATATAATTTAATAATATTTGAATATTA-ATATTATTTTAATTGTA-TTT-TTATTTT
*
13996770 AATATCAATTCAATAATATTT
1 -ATAT-AATTTAATAATATTT
13996791 TAATGTTATT
Statistics
Matches: 108, Mismatches: 18, Indels: 17
0.76 0.13 0.12
Matches are distributed among these distances:
56 8 0.07
57 70 0.65
58 16 0.15
59 14 0.13
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.55
Consensus pattern (54 bp):
ATATAATTTAATAATATTTGAATATTAATATTATTTTAATTGTATTTTTATTTT
Found at i:13996885 original size:21 final size:22
Alignment explanation
Indices: 13996861--13996901 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
13996851 AATTTTAATA
13996861 TAATAAT-TTTTGAA-ATTAAGT
1 TAATAATATTTT-AATATTAAGT
13996882 TAATAATATTTTAATATTAA
1 TAATAATATTTTAATATTAA
13996902 TATTATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (22 bp):
TAATAATATTTTAATATTAAGT
Found at i:13996903 original size:17 final size:17
Alignment explanation
Indices: 13996881--13996914 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
13996871 TGAAATTAAG
13996881 TTAATAATATTTTAATA
1 TTAATAATATTTTAATA
*
13996898 TTAATATTATTTTAATA
1 TTAATAATATTTTAATA
13996915 ATATTTTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTAATAATATTTTAATA
Found at i:13996904 original size:14 final size:13
Alignment explanation
Indices: 13996885--13996928 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
13996875 ATTAAGTTAA
13996885 TAATATTTTAATAT
1 TAATATTTT-ATAT
* *
13996899 TAATATTATTTTAA
1 TAATATT-TTATAT
13996913 TAATATTTTATAT
1 TAATATTTTATAT
13996926 TAA
1 TAA
13996929 ATACGAGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
13 7 0.28
14 16 0.64
15 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TAATATTTTATAT
Found at i:13996914 original size:28 final size:28
Alignment explanation
Indices: 13996875--13996988 Score: 97
Period size: 28 Copynumber: 4.0 Consensus size: 28
13996865 AATTTTTGAA
*
13996875 ATTAAGTTAATAATATTTTAATATTAAT
1 ATTAATTTAATAATATTTTAATATTAAT
*
13996903 ATTATTTTAATAATATTTT-ATATTAAAT
1 ATTAATTTAATAATATTTTAATATT-AAT
** * * **
13996931 ACGAGTTTCATAAT-TTTTAATAATTTTT
1 ATTAATTTAATAATATTTTAAT-ATTAAT
*
13996959 AATTAATTGATATAATATTTTAATATTAAT
1 -ATTAATTTA-ATAATATTTTAATATTAAT
13996989 TAATTATTAG
Statistics
Matches: 65, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
27 9 0.14
28 33 0.51
29 7 0.11
30 9 0.14
31 7 0.11
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (28 bp):
ATTAATTTAATAATATTTTAATATTAAT
Found at i:14002235 original size:17 final size:16
Alignment explanation
Indices: 14002201--14002247 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
14002191 TTAAAAATAA
* *
14002201 AATTAATTTTTATATT
1 AATTAATTTATATTTT
14002217 AATTTAATTTATATTTT
1 AA-TTAATTTATATTTT
*
14002234 AAATAA-TTATATTT
1 AATTAATTTATATTT
14002248 GAATAGAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 8 0.30
16 5 0.19
17 14 0.52
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (16 bp):
AATTAATTTATATTTT
Found at i:14002908 original size:16 final size:15
Alignment explanation
Indices: 14002879--14002921 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 15
14002869 ATAACTACTA
14002879 TAATATTAAAAATTATT
1 TAATATT-AAAATTA-T
*
14002896 TATTATTAAAATTAT
1 TAATATTAAAATTAT
14002911 TAATATTAAAA
1 TAATATTAAAA
14002922 AATAATTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.46
16 7 0.29
17 6 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATATTAAAATTAT
Found at i:14002922 original size:16 final size:17
Alignment explanation
Indices: 14002879--14002979 Score: 80
Period size: 19 Copynumber: 5.8 Consensus size: 17
14002869 ATAACTACTA
14002879 TAATATTAAAAATTATT
1 TAATATTAAAAATTATT
*
14002896 TATTATT-AAAATTA-T
1 TAATATTAAAAATTATT
* *
14002911 TAATATTAAAAAATAAT
1 TAATATTAAAAATTATT
* *
14002928 TATATTTTAATAATAATATT
1 TA-ATATTAA-AA-ATTATT
*
14002948 TAATATTAAAATATCATGT
1 TAATATTAAAA-ATTAT-T
*
14002967 TAATATAAAAAAT
1 TAATATTAAAAAT
14002980 ACTAAAAATA
Statistics
Matches: 69, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
15 7 0.10
16 13 0.19
17 9 0.13
18 14 0.20
19 19 0.28
20 7 0.10
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (17 bp):
TAATATTAAAAATTATT
Found at i:14002930 original size:20 final size:19
Alignment explanation
Indices: 14002908--14002980 Score: 55
Period size: 17 Copynumber: 3.9 Consensus size: 19
14002898 TTATTAAAAT
14002908 TATTAATATTAAAAAAT-A
1 TATTAATATTAAAAAATAA
* *
14002926 -ATT-ATATTTTAATAATAA
1 TATTAATA-TTAAAAAATAA
* *
14002944 TATTTAATATTAAAATATCA
1 TA-TTAATATTAAAAAATAA
*
14002964 TGTTAATA-TAAAAAATA
1 TATTAATATTAAAAAATA
14002981 CTAAAAATAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
16 3 0.07
17 10 0.24
18 8 0.20
19 7 0.17
20 10 0.24
21 3 0.07
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (19 bp):
TATTAATATTAAAAAATAA
Found at i:14003012 original size:16 final size:15
Alignment explanation
Indices: 14002993--14003061 Score: 59
Period size: 16 Copynumber: 4.3 Consensus size: 15
14002983 AAAAATAAAA
*
14002993 ATATTTATTATTCTT
1 ATATTTATTATTATT
*
14003008 -TATATTATTTATTAAT
1 ATAT-TTA-TTATTATT
*
14003024 ATATTAATTATTAATT
1 ATATTTATTATT-ATT
14003040 ATATTTATTAATATATT
1 ATATTTATT-AT-TATT
14003057 ATATT
1 ATATT
14003062 AATAGTATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
14 3 0.07
15 8 0.19
16 18 0.42
17 13 0.30
18 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (15 bp):
ATATTTATTATTATT
Found at i:14003034 original size:31 final size:31
Alignment explanation
Indices: 14002993--14003216 Score: 182
Period size: 31 Copynumber: 7.4 Consensus size: 31
14002983 AAAAATAAAA
*
14002993 ATATT-TATTATTCTTTATATTATTTATTAAT
1 ATATTATATTATT-ATTATATTATTTATTAAT
*
14003024 ATATTA-ATTATTAAT-TA-TATTTATTAAT
1 ATATTATATTATTATTATATTATTTATTAAT
* * *
14003052 ATATTATATTAATAGTATATTATTTGTTAAT
1 ATATTATATTATTATTATATTATTTATTAAT
* * *
14003083 ATATTATAATATTATT-TATTAAAATAATATAAT
1 ATATTATATTATTATTATATT--ATTTAT-TAAT
* * *
14003116 ATTATT-TATTATTGTAATATTATTTATAAAT
1 A-TATTATATTATTATTATATTATTTATTAAT
* *
14003147 ATATTATATTAATAGTATATTATTTATTAAT
1 ATATTATATTATTATTATATTATTTATTAAT
* * *
14003178 ATATTATA--A-TATAATATTACTTATTAAC
1 ATATTATATTATTATTATATTATTTATTAAT
14003206 ATA--ATATTATT
1 ATATTATATTATT
14003217 TATAAGAAAA
Statistics
Matches: 154, Mismatches: 26, Indels: 28
0.74 0.12 0.13
Matches are distributed among these distances:
26 3 0.02
28 36 0.23
29 11 0.07
30 11 0.07
31 66 0.43
32 7 0.05
33 12 0.08
34 8 0.05
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (31 bp):
ATATTATATTATTATTATATTATTTATTAAT
Found at i:14003049 original size:13 final size:13
Alignment explanation
Indices: 14003013--14003064 Score: 61
Period size: 13 Copynumber: 3.8 Consensus size: 13
14003003 TTCTTTATAT
14003013 TATTTATTAATATA
1 TATTTATTAAT-TA
*
14003027 TTAATTATTAATTA
1 -TATTTATTAATTA
14003041 TATTTATTAA-TA
1 TATTTATTAATTA
14003053 TATTATATTAAT
1 TATT-TATTAAT
14003065 AGTATATTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
12 6 0.18
13 15 0.45
14 2 0.06
15 10 0.30
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
TATTTATTAATTA
Found at i:14003160 original size:95 final size:95
Alignment explanation
Indices: 14003041--14003219 Score: 281
Period size: 95 Copynumber: 1.9 Consensus size: 95
14003031 TTATTAATTA
* * *
14003041 TATTTATTAATATATTATATTAATAGTATATTATTTGTTAATATATTATAATATTAT-TTA-TTA
1 TATTTATAAATATATTATATTAATAGTATATTATTTATTAATATATTATAATATAATATTACTT-
*
14003104 AAATAATATAATATTATTTATTATTGTAATAT
65 -AATAACATAATATTATTTATTATTGTAATAT
14003136 TATTTATAAATATATTATATTAATAGTATATTATTTATTAATATATTATAATATAATATTACTTA
1 TATTTATAAATATATTATATTAATAGTATATTATTTATTAATATATTATAATATAATATTACTTA
*
14003201 TTAACATAATATTATTTAT
66 ATAACATAATATTATTTAT
14003220 AAGAAAATTT
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
95 72 0.94
96 3 0.04
97 2 0.03
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (95 bp):
TATTTATAAATATATTATATTAATAGTATATTATTTATTAATATATTATAATATAATATTACTTA
ATAACATAATATTATTTATTATTGTAATAT
Found at i:14003174 original size:18 final size:18
Alignment explanation
Indices: 14003114--14003178 Score: 70
Period size: 18 Copynumber: 3.9 Consensus size: 18
14003104 AAATAATATA
*
14003114 ATATTATTTATT-ATTGT
1 ATATTATTTATTAATAGT
14003131 AATATTATTTA-TAA-A-T
1 -ATATTATTTATTAATAGT
14003147 ATATTA--TATTAATAGT
1 ATATTATTTATTAATAGT
14003163 ATATTATTTATTAATA
1 ATATTATTTATTAATA
14003179 TATTATAATA
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 2 0.05
14 3 0.08
15 7 0.17
16 8 0.20
17 1 0.03
18 19 0.47
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
ATATTATTTATTAATAGT
Found at i:14003189 original size:23 final size:23
Alignment explanation
Indices: 14003068--14003154 Score: 94
Period size: 23 Copynumber: 4.0 Consensus size: 23
14003058 TATTAATAGT
*
14003068 ATATTATTTGTTAATATATTATA
1 ATATTATTTATTAATATATTATA
* *
14003091 ATATTATTTATTAAAATAATATA
1 ATATTATTTATTAATATATTATA
*
14003114 ATATTA--T-TT-AT-TATTGTA
1 ATATTATTTATTAATATATTATA
*
14003132 ATATTATTTATAAATATATTATA
1 ATATTATTTATTAATATATTATA
14003155 TTAATAGTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
18 11 0.22
19 1 0.02
20 3 0.06
21 2 0.04
22 2 0.04
23 32 0.63
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
ATATTATTTATTAATATATTATA
Found at i:14004618 original size:36 final size:36
Alignment explanation
Indices: 14004571--14004641 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
14004561 CAAATAAAAG
*
14004571 TTTTATGTTCATGTTTTCTTAAAGGTAGTAAGTCTA
1 TTTTATGTTCATGTTTTATTAAAGGTAGTAAGTCTA
14004607 TTTTATGTTCATGTTTTATTAAAGGTAGTAAGTCT
1 TTTTATGTTCATGTTTTATTAAAGGTAGTAAGTCT
14004642 TGTATGGTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.07, G:0.17, T:0.51
Consensus pattern (36 bp):
TTTTATGTTCATGTTTTATTAAAGGTAGTAAGTCTA
Found at i:14005696 original size:2 final size:2
Alignment explanation
Indices: 14005689--14005717 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14005679 ATGGTTTAGG
14005689 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14005718 AATGGATCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14006289 original size:31 final size:30
Alignment explanation
Indices: 14006173--14006289 Score: 87
Period size: 31 Copynumber: 3.8 Consensus size: 30
14006163 AATTTGGATG
*
14006173 AAGTTTTAGTTGGATTGAAATTCTTAGGATAA
1 AAGTTTTGGTTGGATTGAAATTCTTA-GAT-A
* * * *
14006205 AAGTTTT-CTATAGACTTG-AACTCGTTGGATA
1 AAGTTTTGGT-TGGA-TTGAAATTC-TTAGATA
* *
14006236 GAGTTTTGGTTGGACT-AGAATTCTTTAGATA
1 AAGTTTTGGTTGGATTGA-AATTC-TTAGATA
14006267 AAGTTTTGGTTGGATTGAAATTC
1 AAGTTTTGGTTGGATTGAAATTC
14006290 AGAGATGATA
Statistics
Matches: 65, Mismatches: 13, Indels: 15
0.70 0.14 0.16
Matches are distributed among these distances:
30 1 0.02
31 40 0.62
32 19 0.29
33 5 0.08
ACGTcount: A:0.29, C:0.07, G:0.23, T:0.41
Consensus pattern (30 bp):
AAGTTTTGGTTGGATTGAAATTCTTAGATA
Found at i:14009436 original size:12 final size:11
Alignment explanation
Indices: 14009421--14009456 Score: 54
Period size: 12 Copynumber: 3.1 Consensus size: 11
14009411 TAAATATATA
14009421 TAAATAAATAAT
1 TAAA-AAATAAT
14009433 TAAAAAATTAAT
1 TAAAAAA-TAAT
14009445 TAAAAAATAAT
1 TAAAAAATAAT
14009456 T
1 T
14009457 TTTTAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 8 0.35
12 15 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
TAAAAAATAAT
Found at i:14010517 original size:27 final size:27
Alignment explanation
Indices: 14010477--14010531 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
14010467 CCAATAGGCC
*
14010477 AATACACACTAACTTTGCTAATTGTGT
1 AATACACACCAACTTTGCTAATTGTGT
*
14010504 AATACACACCAACTTTGTTAATTGTGT
1 AATACACACCAACTTTGCTAATTGTGT
14010531 A
1 A
14010532 CCAAGACAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (27 bp):
AATACACACCAACTTTGCTAATTGTGT
Done.