Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 83 of 100
Found at i:14834161 original size:26 final size:26
Alignment explanation
Indices: 14834132--14834181 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14834122 CTGAATATCT
14834132 TATCACCTTAAGATGATTGGACCTAC
1 TATCACCTTAAGATGATTGGACCTAC
14834158 TATCACCTTAAGATGATTGGACCT
1 TATCACCTTAAGATGATTGGACCT
14834182 CTTATAAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (26 bp):
TATCACCTTAAGATGATTGGACCTAC
Found at i:14837251 original size:13 final size:13
Alignment explanation
Indices: 14837229--14837267 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
14837219 ACCCACCAGA
14837229 AAACAAAAAAAAT
1 AAACAAAAAAAAT
*
14837242 AAACACAAAAAAT
1 AAACAAAAAAAAT
* *
14837255 ACATAAAAAAAAT
1 AAACAAAAAAAAT
14837268 CATGGTCTTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.79, C:0.10, G:0.00, T:0.10
Consensus pattern (13 bp):
AAACAAAAAAAAT
Found at i:14837933 original size:16 final size:16
Alignment explanation
Indices: 14837912--14837978 Score: 57
Period size: 16 Copynumber: 4.2 Consensus size: 16
14837902 TAAAAATTTT
*
14837912 TTTTTTTATTTTCTAA
1 TTTTTTTATTTTATAA
* *
14837928 TTTTTTTATATTATTA
1 TTTTTTTATTTTATAA
*
14837944 TTTTTGTTATTTTA-AG
1 TTTTT-TTATTTTATAA
*
14837960 TATTTTT-TTTTATATA
1 TTTTTTTATTTTATA-A
14837976 TTT
1 TTT
14837979 ATACATTATA
Statistics
Matches: 39, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
14 5 0.13
15 3 0.08
16 24 0.62
17 7 0.18
ACGTcount: A:0.21, C:0.01, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTTTTTATTTTATAA
Found at i:14838097 original size:3 final size:3
Alignment explanation
Indices: 14838089--14838114 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14838079 AAATGCTTAA
14838089 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
14838115 AATTATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:14838413 original size:17 final size:16
Alignment explanation
Indices: 14838387--14838496 Score: 114
Period size: 16 Copynumber: 6.8 Consensus size: 16
14838377 CTAGATTTCT
14838387 AAAACCCCTAAAATCC
1 AAAACCCCTAAAATCC
14838403 AAAATCCCCTAAAATCC
1 AAAA-CCCCTAAAATCC
14838420 AAAATCCCCTAAAATCC
1 AAAA-CCCCTAAAATCC
* * * *
14838437 AAAATCCTTTAAATTC
1 AAAACCCCTAAAATCC
*
14838453 -AAACCCCTAAAATCT
1 AAAACCCCTAAAATCC
* * *
14838468 GAAACCCTTAAAAGCC
1 AAAACCCCTAAAATCC
*
14838484 AAAACCCCCAAAA
1 AAAACCCCTAAAA
14838497 ATCTGAAATC
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
15 10 0.13
16 34 0.44
17 33 0.43
ACGTcount: A:0.48, C:0.33, G:0.02, T:0.17
Consensus pattern (16 bp):
AAAACCCCTAAAATCC
Found at i:14838498 original size:64 final size:65
Alignment explanation
Indices: 14838388--14838508 Score: 163
Period size: 64 Copynumber: 1.9 Consensus size: 65
14838378 TAGATTTCTA
* * *
14838388 AAACCCCTAAAATCCAAAATCCCCTAAAATCCAAAATCCCCTAAAATCCAAAATCCTTTAAATTC
1 AAACCCCTAAAATCCAAAATCCCCTAAAAGCCAAAACCCCCAAAAATCCAAAATCCTTTAAATTC
** * **
14838453 AAACCCCTAAAATCTGAAA-CCCTTAAAAGCCAAAACCCCCAAAAATCTGAAATCCT
1 AAACCCCTAAAATCCAAAATCCCCTAAAAGCCAAAACCCCCAAAAATCCAAAATCCT
14838509 AAACTTTTAA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
64 31 0.65
65 17 0.35
ACGTcount: A:0.46, C:0.32, G:0.02, T:0.19
Consensus pattern (65 bp):
AAACCCCTAAAATCCAAAATCCCCTAAAAGCCAAAACCCCCAAAAATCCAAAATCCTTTAAATTC
Found at i:14838608 original size:14 final size:14
Alignment explanation
Indices: 14838565--14838612 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
14838555 CCTCAAATTT
* *
14838565 TAAAATCGAAATCC
1 TAAAATCAAAACCC
*
14838579 TAAAATCTTCAAACCC
1 TAAAATC--AAAACCC
14838595 TAAAATCAAAACCC
1 TAAAATCAAAACCC
14838609 TAAA
1 TAAA
14838613 CCTTCCATAC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 17 0.59
16 12 0.41
ACGTcount: A:0.52, C:0.25, G:0.02, T:0.21
Consensus pattern (14 bp):
TAAAATCAAAACCC
Found at i:14838629 original size:30 final size:30
Alignment explanation
Indices: 14838540--14838657 Score: 91
Period size: 30 Copynumber: 4.0 Consensus size: 30
14838530 CAAACCCTTT
* **
14838540 AATCAAAACCC-CAAACC-TCAAATTTTAA
1 AATCAAAACCCTAAAACCTTCAAACCTTAA
* * * *
14838568 AATCGAAATCCTAAAATCTTCAAACCCTAA
1 AATCAAAACCCTAAAACCTTCAAACCTTAA
*
14838598 AATCAAAACCCT-AAACCTTCCATACCTTAA
1 AATCAAAACCCTAAAACCTT-CAAACCTTAA
* * * *
14838628 AA-CCAAACCTTAAAACCCTCAAAACTTAA
1 AATCAAAACCCTAAAACCTTCAAACCTTAA
14838657 A
1 A
14838658 TCCAAACTCT
Statistics
Matches: 69, Mismatches: 17, Indels: 7
0.74 0.18 0.08
Matches are distributed among these distances:
28 9 0.13
29 26 0.38
30 34 0.49
ACGTcount: A:0.48, C:0.30, G:0.01, T:0.21
Consensus pattern (30 bp):
AATCAAAACCCTAAAACCTTCAAACCTTAA
Found at i:14838639 original size:13 final size:13
Alignment explanation
Indices: 14838621--14838672 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
14838611 AACCTTCCAT
14838621 ACCTTAAAACCAA
1 ACCTTAAAACCAA
14838634 ACCTTAAAACCCTCAA
1 ACCTTAAAA--C-CAA
* *
14838650 AACTTAAATCCAA
1 ACCTTAAAACCAA
14838663 ACTCTTAAAA
1 AC-CTTAAAA
14838673 TCTGAATCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
13 13 0.42
14 7 0.23
15 1 0.03
16 10 0.32
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (13 bp):
ACCTTAAAACCAA
Found at i:14838691 original size:23 final size:23
Alignment explanation
Indices: 14838660--14838713 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
14838650 AACTTAAATC
* *
14838660 CAAACTCTTAAAATCTGAATCTT
1 CAAAATCTTAAAACCTGAATCTT
* *
14838683 CAAAATCTTGAAACCTTAATCTT
1 CAAAATCTTAAAACCTGAATCTT
*
14838706 TAAAATCT
1 CAAAATCT
14838714 CTACTCAAGC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.20, G:0.04, T:0.35
Consensus pattern (23 bp):
CAAAATCTTAAAACCTGAATCTT
Found at i:14842673 original size:3 final size:3
Alignment explanation
Indices: 14842665--14842690 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
14842655 TTTTAAAAAT
14842665 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
14842691 TTAAATAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14843459 original size:14 final size:14
Alignment explanation
Indices: 14843436--14843477 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
14843426 ATCAGAATTC
14843436 AAAAAAAAAAAAAT
1 AAAAAAAAAAAAAT
*
14843450 AAAAATAAAAAAAT
1 AAAAAAAAAAAAAT
14843464 AAAAAAGAAAAAAA
1 AAAAAA-AAAAAAA
14843478 AGAAAAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 18 0.72
15 7 0.28
ACGTcount: A:0.90, C:0.00, G:0.02, T:0.07
Consensus pattern (14 bp):
AAAAAAAAAAAAAT
Found at i:14843503 original size:1 final size:1
Alignment explanation
Indices: 14843436--14843485 Score: 55
Period size: 1 Copynumber: 50.0 Consensus size: 1
14843426 ATCAGAATTC
* * * * *
14843436 AAAAAAAAAAAAATAAAAATAAAAAAATAAAAAAGAAAAAAAAGAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
14843486 GTATATGTAC
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.90, C:0.00, G:0.04, T:0.06
Consensus pattern (1 bp):
A
Found at i:14844527 original size:15 final size:15
Alignment explanation
Indices: 14844507--14844536 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14844497 AAAGGGATAT
*
14844507 TTGCATTTGCATCAC
1 TTGCATCTGCATCAC
14844522 TTGCATCTGCATCAC
1 TTGCATCTGCATCAC
14844537 AAGAAAGACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (15 bp):
TTGCATCTGCATCAC
Found at i:14844769 original size:18 final size:18
Alignment explanation
Indices: 14844743--14844783 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
14844733 TCTTGTATTT
* * *
14844743 GCATCGACATTTGCATTC
1 GCATTGACATTTCCATTA
14844761 GCATTGACATTTCCATTA
1 GCATTGACATTTCCATTA
14844779 GCATT
1 GCATT
14844784 ATTTGATGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (18 bp):
GCATTGACATTTCCATTA
Found at i:14844942 original size:41 final size:41
Alignment explanation
Indices: 14844875--14844979 Score: 140
Period size: 41 Copynumber: 2.6 Consensus size: 41
14844865 TTTAAGTTTT
* * *
14844875 AAAGTCTCTATTTAAGAGGAACCATTTCCAGTCAAGATTTC
1 AAAGCCTCTGTTTAAGAGGAACCATTTCCAATCAAGATTTC
*
14844916 AAAGCCTCTGTTTAAGAGGAACCATTTTCAATCAAGATTTC
1 AAAGCCTCTGTTTAAGAGGAACCATTTCCAATCAAGATTTC
* *
14844957 AAAACCTATGTTT-AGAAGGAACC
1 AAAGCCTCTGTTTAAG-AGGAACC
14844980 TTCTTCATAT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
40 2 0.04
41 55 0.96
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (41 bp):
AAAGCCTCTGTTTAAGAGGAACCATTTCCAATCAAGATTTC
Found at i:14845389 original size:88 final size:88
Alignment explanation
Indices: 14845254--14845421 Score: 257
Period size: 88 Copynumber: 1.9 Consensus size: 88
14845244 CTCCAGGCAT
* * **
14845254 AATTTTGATTCACGGTGTTATCTCGATCGATTTCTTATCTTTTGACTTGTGGTGTTATCCCAGTC
1 AATTTTGATTCACGGTGTTATCCCGATCGATTTCTTATCTTTCGACTTGCAGTGTTATCCCAGTC
*
14845319 GATTCTCTAAGACCTCTGAGCAA
66 AATTCTCTAAGACCTCTGAGCAA
*
14845342 AATTTTGATTCGCGGTGTTATCCCGATCGA-TTCTTTATCTTTCGACTTGCAGTGTTATCCCAGT
1 AATTTTGATTCACGGTGTTATCCCGATCGATTTC-TTATCTTTCGACTTGCAGTGTTATCCCAGT
*
14845406 CAATTCTGTAAGACCT
65 CAATTCTCTAAGACCT
14845422 TCGGACATGA
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
87 3 0.04
88 69 0.96
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.40
Consensus pattern (88 bp):
AATTTTGATTCACGGTGTTATCCCGATCGATTTCTTATCTTTCGACTTGCAGTGTTATCCCAGTC
AATTCTCTAAGACCTCTGAGCAA
Found at i:14845574 original size:87 final size:87
Alignment explanation
Indices: 14845459--14845643 Score: 273
Period size: 87 Copynumber: 2.1 Consensus size: 87
14845449 GCATAATTTC
* *
14845459 TAAGACCTCCGGGCATAAATTCGATTCGCGATATTGTCTCAATCGATTCTTTATTTCTGACTTAC
1 TAAGACCTCCGAGCATAAATTCGATTCGCGATATTGTCTCAATCGATTCTTTATTTCTGACCTA-
*
14845524 GA-TGTTATCTCGGTCAATTCTG
65 GAGTGTTATCTCGATCAATTCTG
* * * * * *
14845546 TAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTGTCTCGATCGATTCTTTATTTTTGACCTAG
1 TAAGACCTCCGAGCATAAATTCGATTCGCGATATTGTCTCAATCGATTCTTTATTTCTGACCTAG
14845611 AGTGTTATCTCGATCAATTCTG
66 AGTGTTATCTCGATCAATTCTG
14845633 TAAGACCTCCG
1 TAAGACCTCCG
14845644 GACATGATTT
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
86 2 0.02
87 86 0.98
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (87 bp):
TAAGACCTCCGAGCATAAATTCGATTCGCGATATTGTCTCAATCGATTCTTTATTTCTGACCTAG
AGTGTTATCTCGATCAATTCTG
Found at i:14845675 original size:22 final size:22
Alignment explanation
Indices: 14845633--14845676 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
14845623 ATCAATTCTG
*
14845633 TAAGACCTCCGGACATGATTTC
1 TAAGACCTCCGGACATAATTTC
14845655 TAAGACCTCC-GAGCATAATTTC
1 TAAGACCTCCGGA-CATAATTTC
14845677 GATTCGTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (22 bp):
TAAGACCTCCGGACATAATTTC
Found at i:14845744 original size:109 final size:109
Alignment explanation
Indices: 14845546--14845762 Score: 303
Period size: 109 Copynumber: 2.0 Consensus size: 109
14845536 GTCAATTCTG
* * *
14845546 TAAGACCTCCGAGCATAATTTTGATTCGCGGTGTTGTCTCGATCGATTCTTTATTTTTGACCTAG
1 TAAGACCTCCGAGCATAATTTCGATTCGCAGTGTTGTCTCGATCGATTCTTTATTTTTGAACTAG
* *
14845611 AGTGTTATCTCGATCAATTCTGTAAGACCTCCGGACATGATTTC
66 AGTGTTATCCCGATCAATTCTGTAAGACCTCCGGACATAATTTC
* *
14845655 TAAGACCTCCGAGCATAATTTCGATTCGTAGTGTTGTCTCGATCGATTCTTTATTTTT-AACTTG
1 TAAGACCTCCGAGCATAATTTCGATTCGCAGTGTTGTCTCGATCGATTCTTTATTTTTGAACTAG
* * * *
14845719 TGGTGTTATCCC-AGTCGATTTTGTAAGACCTCCGGGCATAATTT
66 -AGTGTTATCCCGA-TCAATTCTGTAAGACCTCCGGACATAATTT
14845763 TGATTTGCAG
Statistics
Matches: 95, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
108 5 0.05
109 90 0.95
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (109 bp):
TAAGACCTCCGAGCATAATTTCGATTCGCAGTGTTGTCTCGATCGATTCTTTATTTTTGAACTAG
AGTGTTATCCCGATCAATTCTGTAAGACCTCCGGACATAATTTC
Found at i:14845765 original size:196 final size:194
Alignment explanation
Indices: 14845431--14846106 Score: 763
Period size: 196 Copynumber: 3.4 Consensus size: 194
14845421 TTCGGACATG
* * * *
14845431 ATTCTGTAAGACCTCTGGGCATAATTTCTAAGACCTCCGGGCATAAATTCGATTCGCGATATTGT
1 ATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAGCATAAATTCGATTCGCGATGTTGT
* * * * *
14845496 CTCAATCGATTCTTTATTTCTGACTTACGATGTTATCTCGGTCAATTCTGTAAGACCTCCGAGCA
66 CTCAATCGATTCTTTATTTTTGACTTACGGTGTTATC-CCGTCAATTTTGTAAGACCTCCGGGCA
* * * *
14845561 TAATTTTGATTCGCGGTGTTGTCTCGATCGATTCTTTATTTTTGACCTAGAGTGTTATCTCGATC
130 TAATTTTGATTTGCAGTGTTGTCCCAATCGATTCTTTATTTTTGACCT-GAGTGTTATCTCGATC
14845626 A
194 A
* * *
14845627 ATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTCCGAGCATAATTTCGATTCG-TAGTGTTG
1 ATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAGCATAAATTCGATTCGCGA-TGTTG
* * ** *
14845691 TCTCGATCGATTCTTTATTTTTAACTTGTGGTGTTATCCCAGTCGATTTTGTAAGACCTCCGGGC
65 TCTCAATCGATTCTTTATTTTTGACTTACGGTGTTATCCC-GTCAATTTTGTAAGACCTCCGGGC
*
14845756 ATAATTTTGATTTGCAGTGTTGTCCCAATCGACTT-TTTATTTCTGACCTGCAGTGTTATCTCTG
129 ATAATTTTGATTTGCAGTGTTGTCCCAATCGA-TTCTTTATTTTTGACCTG-AGTGTTATCTC-G
14845820 -TCA
191 ATCA
* * ** *
14845823 ATTCTGTAAAACATCTAGGCATGATTTCTAAGACCTCC-AGGCATAATTTCGATTCGCGATGTTG
1 ATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGA-GCATAAATTCGATTCGCGATGTTG
* * * *
14845887 TCCCAATCGATTCTTTATTTTTGATTTACGGTGTTATCCCGATCAATTTTGTAAAACCTCCTAGG
65 TCTCAATCGATTCTTTATTTTTGACTTACGGTGTTATCCCG-TCAATTTTGTAAGACCTCC-GGG
* * **
14845952 CATAAATTTGATTTGCAGTGTTATCCCAATCGATTCAATATTTTTTGA-CTGACGGTGTTATC-C
128 CATAATTTTGATTTGCAGTGTTGTCCCAATCGATTCTTTA-TTTTTGACCTGA--GTGTTATCTC
*
14846015 -AGTCG
190 GA-TCA
* * * * * * * *
14846020 ATTCTATAAGACCTTTCGGGCATGATTCCTAAGACCTCTGGGCATAAATTCGATTCACGGTGTTC
1 ATTCTGTAAGACC-TCCGGGCATGATTTCTAAGACCTCCGAGCATAAATTCGATTCGCGATGTTG
*
14846085 TCTCGATCGATTCTTTATTTTT
65 TCTCAATCGATTCTTTATTTTT
14846107 TTGACTTGAG
Statistics
Matches: 405, Mismatches: 58, Indels: 32
0.82 0.12 0.06
Matches are distributed among these distances:
195 5 0.01
196 271 0.67
197 55 0.14
198 74 0.18
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.39
Consensus pattern (194 bp):
ATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGAGCATAAATTCGATTCGCGATGTTGT
CTCAATCGATTCTTTATTTTTGACTTACGGTGTTATCCCGTCAATTTTGTAAGACCTCCGGGCAT
AATTTTGATTTGCAGTGTTGTCCCAATCGATTCTTTATTTTTGACCTGAGTGTTATCTCGATCA
Found at i:14845812 original size:87 final size:87
Alignment explanation
Indices: 14845655--14845815 Score: 207
Period size: 87 Copynumber: 1.9 Consensus size: 87
14845645 ACATGATTTC
* * * * * *
14845655 TAAGACCTCCGAGCATAATTTCGATTCGTAGTGTTGTCTCGATCGATTCTTTATTTTTAACTTGT
1 TAAGACCTCCGAGCATAATTTCGATTCGCAGTGTTGTCCCAATCGATTCTTTATTTCTAACCTGC
*
14845720 GGTGTTATCCCAGTCGATTTTG
66 AGTGTTATCCCAGTCGATTTTG
* * * *
14845742 TAAGACCTCCGGGCATAATTTTGATTTGCAGTGTTGTCCCAATCGACTT-TTTATTTCTGACCTG
1 TAAGACCTCCGAGCATAATTTCGATTCGCAGTGTTGTCCCAATCGA-TTCTTTATTTCTAACCTG
14845806 CAGTGTTATC
65 CAGTGTTATC
14845816 TCTGTCAATT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
87 60 0.97
88 2 0.03
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (87 bp):
TAAGACCTCCGAGCATAATTTCGATTCGCAGTGTTGTCCCAATCGATTCTTTATTTCTAACCTGC
AGTGTTATCCCAGTCGATTTTG
Found at i:14845933 original size:109 final size:110
Alignment explanation
Indices: 14845742--14845954 Score: 272
Period size: 109 Copynumber: 1.9 Consensus size: 110
14845732 GTCGATTTTG
* * * *
14845742 TAAGACCTCCGGGCATAATTTTGATTTGCAGTGTTGTCCCAATCGACTTTTTATTTCTGACCTGC
1 TAAGACCTCCAGGCATAATTTCGATTCGCAGTGTTGTCCCAATCGACTTTTTATTTCTGACCTAC
*
14845807 AGTGTTATCTCTGTCAATTCTGTAAAACAT-CTAGGCATGATTTC
66 AGTGTTATCTCCGTCAATTCTGTAAAACATCCTAGGCATGATTTC
* **
14845851 TAAGACCTCCAGGCATAATTTCGATTCGC-GATGTTGTCCCAATCGA-TTCTTTATTTTTGATTT
1 TAAGACCTCCAGGCATAATTTCGATTCGCAG-TGTTGTCCCAATCGACTT-TTTATTTCTGACCT
* * *
14845914 ACGGTGTTATC-CCGATCAATTTTGTAAAACCTCCTAGGCAT
64 ACAGTGTTATCTCCG-TCAATTCTGTAAAACATCCTAGGCAT
14845955 AAATTTGATT
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
108 5 0.06
109 76 0.85
110 8 0.09
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (110 bp):
TAAGACCTCCAGGCATAATTTCGATTCGCAGTGTTGTCCCAATCGACTTTTTATTTCTGACCTAC
AGTGTTATCTCCGTCAATTCTGTAAAACATCCTAGGCATGATTTC
Found at i:14846374 original size:109 final size:109
Alignment explanation
Indices: 14846175--14846377 Score: 255
Period size: 109 Copynumber: 1.9 Consensus size: 109
14846165 ATTTCTATAG
** * *
14846175 TTTCCCTGACTTGCAATTTAATCCCAATCTCTTTTATCTTTCTAACTGGCGGTTCAATCCTAGTT
1 TTTCCCTGACTTGCAATTTAATCCCAATCTCTTTTATCTTTCTAACTGGCAATTCAATCCAAATT
* ** **
14846240 GTCGTCAATATTTGGCTCATGGTTTAATCCCAGTCATTTCATTA
66 ATCGTCAATATTTAACTCACAGTTTAATCCCAGTCATTTCATTA
* * *
14846284 TTTCCCTGACTTGCGATTTAATCCCAATCTCTTTTATCTTTCTAACTTGCAATTTAATCCAAATT
1 TTTCCCTGACTTGCAATTTAATCCCAATCTCTTTTATCTTTCTAACTGGCAATTCAATCCAAATT
* * *
14846349 AAT-GTCATTTTTTAACTCGCAGTTTAATC
66 -ATCGTCAATATTTAACTCACAGTTTAATC
14846378 TCAATCTTTT
Statistics
Matches: 78, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
109 77 0.99
110 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.43
Consensus pattern (109 bp):
TTTCCCTGACTTGCAATTTAATCCCAATCTCTTTTATCTTTCTAACTGGCAATTCAATCCAAATT
ATCGTCAATATTTAACTCACAGTTTAATCCCAGTCATTTCATTA
Found at i:14846491 original size:68 final size:68
Alignment explanation
Indices: 14846415--14846765 Score: 211
Period size: 68 Copynumber: 5.1 Consensus size: 68
14846405 TTCAATCCTA
*
14846415 ATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACTCAAGGTTTAATT
1 ATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACTCACGGTTTAATT
14846480 TTG
66 TTG
* ** * * * * ** **** * * * * *
14846483 ATCTCTTTATTTTCTTACTTGTGATTCAATC-CAAGTTAACATTATTCTCTAATTCGCGGTTCAA
1 ATCTCTTTA-ATTCAAAGTCGTAATTTAATCTTGA-TTGTTGTTATCCTCTGACTCACGGTTTAA
** *
14846547 TCCTA
64 TTTTG
*
14846552 ATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACTCATGGTTTAATT
1 ATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACTCACGGTTTAATT
*
14846617 TCG
66 TTG
* * ** * * * * ** **** * * * * *
14846620 GTCTCTTTATTTTCTTACTTGTGATTCAATC-CAAGTTAACATTATTCTCTAATTCGCGGTTCAA
1 ATCTCTTTA-ATTCAAAGTCGTAATTTAATCTTGA-TTGTTGTTATCCTCTGACTCACGGTTTAA
** *
14846684 TCCTA
64 TTTTG
*
14846689 ATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACTCATGGTTTAATT
1 ATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACTCACGGTTTAATT
*
14846754 TCG
66 TTG
*
14846757 GTCTCTTTA
1 ATCTCTTTA
14846766 TTTTCTTACT
Statistics
Matches: 183, Mismatches: 94, Indels: 12
0.63 0.33 0.04
Matches are distributed among these distances:
68 95 0.52
69 88 0.48
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.46
Consensus pattern (68 bp):
ATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACTCACGGTTTAATT
TTG
Found at i:14846546 original size:137 final size:137
Alignment explanation
Indices: 14846387--14846834 Score: 824
Period size: 137 Copynumber: 3.3 Consensus size: 137
14846377 CTCAATCTTT
*
14846387 TTATTCTCTGATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
1 TTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
* * *
14846452 TTGTTATCCTCTGACTCAAGGTTTAATTTTGATCTCTTTATTTTCTTACTTGTGATTCAATCCAA
66 TTGTTATCCTCTGACTCATGGTTTAATTTCGGTCTCTTTATTTTCTTACTTGTGATTCAATCCAA
14846517 GTTAACA
131 GTTAACA
14846524 TTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
1 TTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
14846589 TTGTTATCCTCTGACTCATGGTTTAATTTCGGTCTCTTTATTTTCTTACTTGTGATTCAATCCAA
66 TTGTTATCCTCTGACTCATGGTTTAATTTCGGTCTCTTTATTTTCTTACTTGTGATTCAATCCAA
14846654 GTTAACA
131 GTTAACA
14846661 TTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
1 TTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
14846726 TTGTTATCCTCTGACTCATGGTTTAATTTCGGTCTCTTTATTTTCTTACTTGTGATTCAATCCAA
66 TTGTTATCCTCTGACTCATGGTTTAATTTCGGTCTCTTTATTTTCTTACTTGTGATTCAATCCAA
14846791 GTTAACA
131 GTTAACA
* * **
14846798 TTATTCTCTGATTCGCGGTTTAATCCCGATCTCTTTA
1 TTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTA
14846835 TTCTTTGATT
Statistics
Matches: 303, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 303 1.00
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (137 bp):
TTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
TTGTTATCCTCTGACTCATGGTTTAATTTCGGTCTCTTTATTTTCTTACTTGTGATTCAATCCAA
GTTAACA
Found at i:14846837 original size:34 final size:34
Alignment explanation
Indices: 14846798--14846868 Score: 88
Period size: 34 Copynumber: 2.1 Consensus size: 34
14846788 CAAGTTAACA
* *
14846798 TTATTCTCTGATTCGCGGTTTAATCCCGATCTCT
1 TTATTCTCTGATTCACGGTTCAATCCCGATCTCT
* * * *
14846832 TTATTCTTTGATTTATGGTTCAATCCTGATCTCT
1 TTATTCTCTGATTCACGGTTCAATCCCGATCTCT
14846866 TTA
1 TTA
14846869 ATTCAAAATC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.17, C:0.21, G:0.13, T:0.49
Consensus pattern (34 bp):
TTATTCTCTGATTCACGGTTCAATCCCGATCTCT
Found at i:14846916 original size:274 final size:272
Alignment explanation
Indices: 14846387--14846894 Score: 709
Period size: 274 Copynumber: 1.9 Consensus size: 272
14846377 CTCAATCTTT
*
14846387 TTATTCTCTGATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
1 TTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
*
14846452 TTGTTATCCTCTGACTCAAGGTTTAATTTTGATCTCTTTATTTTCTTACTTGTGATTCAATCCAA
66 TTGTTATCCTCTGACTCAAGGTTTAATTTCGATCTCTTTATTTTCTTACTTGTGATTCAATCCAA
*
14846517 GTTAACATTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATC
131 GTTAACATTATTCTCTAATTCGCGGTTCAATCCCAATCTCTTTAATTCAAAGTC-TAATTTAATC
* * * ** * * * * * *
14846582 TTGATTGTTGTTATCCTCTGACTCATGGTTTAATTTCGGTCTCTTTATTTTCTTACTTGTGATTC
195 CTGATTCTTGTAAT-CTCAAAATCATAGTTTAATCTCAGTCTCTTTATCTTCTGACTTGTGATTC
14846647 AATCCAAGTTAACA
259 AATCCAAGTTAACA
14846661 TTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
1 TTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
* *
14846726 TTGTTATCCTCTGACTCATGGTTTAATTTCGGTCTCTTTATTTTCTTACTTGTGATTCAATCCAA
66 TTGTTATCCTCTGACTCAAGGTTTAATTTCGATCTCTTTATTTTCTTACTTGTGATTCAATCCAA
* * * *** *
14846791 GTTAACATTATTCTCTGATTCGCGGTTTAATCCCGATCTCTTT-ATTCTTTGAT-TTATGGTTCA
131 GTTAACATTATTCTCTAATTCGCGGTTCAATCCCAATCTCTTTAATTCAAAG-TCTAAT--TT-A
*
14846854 ATCCTGATCTCTT-TAAT-TCAAAATCGTAGTTTAATCTCAGT
192 ATCCTGAT-TCTTGTAATCTCAAAATCATAGTTTAATCTCAGT
14846895 TGTTGTTATC
Statistics
Matches: 207, Mismatches: 22, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
272 3 0.01
273 22 0.11
274 168 0.81
275 11 0.05
276 3 0.01
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.46
Consensus pattern (272 bp):
TTATTCTCTAATTCGCGGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTG
TTGTTATCCTCTGACTCAAGGTTTAATTTCGATCTCTTTATTTTCTTACTTGTGATTCAATCCAA
GTTAACATTATTCTCTAATTCGCGGTTCAATCCCAATCTCTTTAATTCAAAGTCTAATTTAATCC
TGATTCTTGTAATCTCAAAATCATAGTTTAATCTCAGTCTCTTTATCTTCTGACTTGTGATTCAA
TCCAAGTTAACA
Found at i:14846950 original size:171 final size:171
Alignment explanation
Indices: 14846677--14847646 Score: 1101
Period size: 171 Copynumber: 5.7 Consensus size: 171
14846667 TCTAATTCGC
* * * *
14846677 GGTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCT-TGATTGTTGTTATCCTCTGAC
1 GGTTCAATCCTGATCTCTTTAATTCAAAATCGTAGTTTAATCTCAG-TTGTTGTTATCCTCTGAC
* ** * *
14846741 TCATGGTTTAATTTCGGTCTCTTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTC
65 TCGTGGTTTAATCCCGATCTCCTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTC
* * *
14846806 TGATTCGCGGTTTAATCCCGATCTCTTTATTCTTTGATTTAT
130 TGATTCGTGATTTAATCCCGATCTCTTTATTCTCTGATTTAT
*
14846848 GGTTCAATCCTGATCTCTTTAATTCAAAATCGTAGTTTAATCTCAGTTGTTGTTATCCTTTGACT
1 GGTTCAATCCTGATCTCTTTAATTCAAAATCGTAGTTTAATCTCAGTTGTTGTTATCCTCTGACT
* * * ** * * *
14846913 TGTGGTCTAATCCCGGTCTCCTTATTTTCGGACTTGTGATTCAATCCAAGTTAACGTAATTTTCT
66 CGTGGTTTAATCCCGATCTCCTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCT
* *** * * *
14846978 GACTCGTGATTTAATTTTGGTCTTTTTATTCTCCGATTTACT
131 GATTCGTGATTTAATCCCGATCTCTTTATTCTCTGATTTA-T
* * *
14847020 -GTTCAATCTTGATCTCTTTAATT-AAAGTCGTAGTTTAATCTCAATTGTTGTTATCCTCTGACT
1 GGTTCAATCCTGATCTCTTTAATTCAAAATCGTAGTTTAATCTCAGTTGTTGTTATCCTCTGACT
* *
14847083 CGTGGTTTAATTCCGATCTCCTTATTTTCTTACTTGTGATTCAATCTAAGTTAACATTATTCTCT
66 CGTGGTTTAATCCCGATCTCCTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCT
* * **
14847148 GATTCGTGGTTTAATCCCGGTCTCTTTATTCTCTGATTCGCT
131 GATTCGTGATTTAATCCCGATCTCTTTATTCTCTGATT-TAT
* * * *
14847190 -GTTCAATCTTGATCTCTTTAATTCAAAATCATAGTTTAATCTCGGTTGTTGTTATCCTTTGACT
1 GGTTCAATCCTGATCTCTTTAATTCAAAATCGTAGTTTAATCTCAGTTGTTGTTATCCTCTGACT
* * * ** ** * *
14847254 CGTGGTCTAATCTCGATCTCTTTATTTTCGGACTTGTGATTCAATCCAAGTTAATGTCATTTTCT
66 CGTGGTTTAATCCCGATCTCCTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCT
* * ** * * * *
14847319 AACTCACGATTTAAT-CCTAGTCTTTTTATTCTCCGATTTGT
131 GATTCGTGATTTAATCCCGA-TCTCTTTATTCTCTGATTTAT
* * * * * *
14847360 GATTCAGT-CTCGATCTCTTTAATTCAAAGTCGCAATTTAATCT-TGATTGTTGTTATCCTCTGA
1 GGTTCAATCCT-GATCTCTTTAATTCAAAATCGTAGTTTAATCTCAG-TTGTTGTTATCCTCTGA
* * *
14847423 CTCGTGGTTTAATCCTGATCTCTTTATTTTTTTACTTGTGATTCAATCCAAGTTAACATTATT-T
64 CTCGTGGTTTAATCCCGATCTCCTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCT
* * ***
14847487 ACTGATTCGTGATTTAATCACAATCTCTTTATTCTCTGATTCGC
129 -CTGATTCGTGATTTAATCCCGATCTCTTTATTCTCTGATTTAT
* * * * *
14847531 AGTTCAATCCCGATCCCTTTAATTTAAAATCGTAGTTTAATCTTAGTTGTTGTTATCCTCTGACT
1 GGTTCAATCCTGATCTCTTTAATTCAAAATCGTAGTTTAATCTCAGTTGTTGTTATCCTCTGACT
* * *
14847596 CGTGGTTTAATCTCGGTCTCCTTATTTTCTTACTTATGATTCAATCCAAGT
66 CGTGGTTTAATCCCGATCTCCTTATTTTCTTACTTGTGATTCAATCCAAGT
14847647 CAACGTTCTC
Statistics
Matches: 667, Mismatches: 120, Indels: 24
0.82 0.15 0.03
Matches are distributed among these distances:
170 153 0.23
171 508 0.76
172 6 0.01
ACGTcount: A:0.21, C:0.19, G:0.13, T:0.46
Consensus pattern (171 bp):
GGTTCAATCCTGATCTCTTTAATTCAAAATCGTAGTTTAATCTCAGTTGTTGTTATCCTCTGACT
CGTGGTTTAATCCCGATCTCCTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCT
GATTCGTGATTTAATCCCGATCTCTTTATTCTCTGATTTAT
Found at i:14847081 original size:341 final size:340
Alignment explanation
Indices: 14846678--14847652 Score: 1418
Period size: 341 Copynumber: 2.9 Consensus size: 340
14846668 CTAATTCGCG
* *
14846678 GTTCAATCCTAATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACTC
1 GTTCAATCTTGATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACTC
* * *
14846743 ATGGTTTAATTTCGGTCTCTTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTG
66 GTGGTTTAATTCCGATCTCTTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTG
* * *
14846808 ATTCGCGGTTTAATCCCGATCTCTTTATTCTTTGATTTATGGTTCAATCCTGATCTCTTTAATTC
131 ATTCGTGGTTTAATCCCGATCTCTTTATTCTCTGATTCAT-GTTCAATCCTGATCTCTTTAATTC
* *
14846873 AAAATCGTAGTTTAATCTCAGTTGTTGTTATCCTTTGACTTGTGGTCTAATCCCGGTCTCCTTAT
195 AAAATCGTAGTTTAATCTCAGTTGTTGTTATCCTTTGACTCGTGGTCTAATCTCGGTCTCCTTAT
* ** ** *
14846938 TTTCGGACTTGTGATTCAATCCAAGTTAACGTAATTTTCTGACTCGTGATTTAATTTTGGTCTTT
260 TTTCGGACTTGTGATTCAATCCAAGTTAACGTAATTTTCTAACTCACGATTTAATCCTAGTCTTT
14847003 TTATTCTCCGATTTACT
325 TTATTCTCCGATTT-CT
* **
14847020 GTTCAATCTTGATCTCTTTAATT-AAAGTCGTAGTTTAATCTCAATTGTTGTTATCCTCTGACTC
1 GTTCAATCTTGATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACTC
* *
14847084 GTGGTTTAATTCCGATCTCCTTATTTTCTTACTTGTGATTCAATCTAAGTTAACATTATTCTCTG
66 GTGGTTTAATTCCGATCTCTTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTG
* * *
14847149 ATTCGTGGTTTAATCCCGGTCTCTTTATTCTCTGATTCGCTGTTCAATCTTGATCTCTTTAATTC
131 ATTCGTGGTTTAATCCCGATCTCTTTATTCTCTGATTC-ATGTTCAATCCTGATCTCTTTAATTC
* * * *
14847214 AAAATCATAGTTTAATCTCGGTTGTTGTTATCCTTTGACTCGTGGTCTAATCTCGATCTCTTTAT
195 AAAATCGTAGTTTAATCTCAGTTGTTGTTATCCTTTGACTCGTGGTCTAATCTCGGTCTCCTTAT
* *
14847279 TTTCGGACTTGTGATTCAATCCAAGTTAATGTCATTTTCTAACTCACGATTTAATCCTAGTCTTT
260 TTTCGGACTTGTGATTCAATCCAAGTTAACGTAATTTTCTAACTCACGATTTAATCCTAGTCTTT
*
14847344 TTATTCTCCGATTTGT
325 TTATTCTCCGATTTCT
* * *
14847360 GATTCAGTCTCGATCTCTTTAATTCAAAGTCGCAATTTAATCTTGATTGTTGTTATCCTCTGACT
1 G-TTCAATCTTGATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACT
*
14847425 CGTGGTTTAA-TCCTGATCTCTTTATTTTTTTACTTGTGATTCAATCCAAGTTAACATTATT-TA
65 CGTGGTTTAATTCC-GATCTCTTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCT-
* * * * *
14847488 CTGATTCGTGATTTAATCACAATCTCTTTATTCTCTGATTCGCA-GTTCAATCCCGATCCCTTTA
128 CTGATTCGTGGTTTAATCCCGATCTCTTTATTCTCTGATT--CATGTTCAATCCTGATCTCTTTA
* * * *
14847552 ATTTAAAATCGTAGTTTAATCTTAGTTGTTGTTATCCTCTGACTCGTGGTTTAATCTCGGTCTCC
191 ATTCAAAATCGTAGTTTAATCTCAGTTGTTGTTATCCTTTGACTCGTGGTCTAATCTCGGTCTCC
** * *
14847617 TTATTTTCTTACTTATGATTCAATCCAAGTCAACGT
256 TTATTTTCGGACTTGTGATTCAATCCAAGTTAACGT
14847653 TCTCTGATTT
Statistics
Matches: 565, Mismatches: 61, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
340 2 0.00
341 309 0.55
342 253 0.45
344 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.46
Consensus pattern (340 bp):
GTTCAATCTTGATCTCTTTAATTCAAAGTCGTAATTTAATCTTGATTGTTGTTATCCTCTGACTC
GTGGTTTAATTCCGATCTCTTTATTTTCTTACTTGTGATTCAATCCAAGTTAACATTATTCTCTG
ATTCGTGGTTTAATCCCGATCTCTTTATTCTCTGATTCATGTTCAATCCTGATCTCTTTAATTCA
AAATCGTAGTTTAATCTCAGTTGTTGTTATCCTTTGACTCGTGGTCTAATCTCGGTCTCCTTATT
TTCGGACTTGTGATTCAATCCAAGTTAACGTAATTTTCTAACTCACGATTTAATCCTAGTCTTTT
TATTCTCCGATTTCT
Found at i:14847206 original size:34 final size:34
Alignment explanation
Indices: 14847139--14847209 Score: 90
Period size: 34 Copynumber: 2.1 Consensus size: 34
14847129 TAAGTTAACA
* *
14847139 TTATTCTCTGATTCGTGGTTTAATCCCGGTCTCT
1 TTATTCTCTGATTCGTGGTTCAATCCCGATCTCT
**
14847173 TTATTCTCTGATTCGCT-GTTCAATCTTGATCTCT
1 TTATTCTCTGATTCG-TGGTTCAATCCCGATCTCT
14847207 TTA
1 TTA
14847210 ATTCAAAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
34 31 0.97
35 1 0.03
ACGTcount: A:0.14, C:0.23, G:0.14, T:0.49
Consensus pattern (34 bp):
TTATTCTCTGATTCGTGGTTCAATCCCGATCTCT
Found at i:14849603 original size:16 final size:16
Alignment explanation
Indices: 14849584--14849677 Score: 95
Period size: 16 Copynumber: 6.0 Consensus size: 16
14849574 ATCCTAGGTT
14849584 TCTAAAACCCCTAAAA
1 TCTAAAACCCCTAAAA
*
14849600 TCTAATATCCCCTAAAA
1 TCTAA-AACCCCTAAAA
* * *
14849617 TCCAAAATCCCTTAAA
1 TCTAAAACCCCTAAAA
*
14849633 TC-CAAA-CCCTAAAA
1 TCTAAAACCCCTAAAA
*
14849647 TCTGAAACCCCTAAAA
1 TCTAAAACCCCTAAAA
*
14849663 TCCAAAACCCC-AAAA
1 TCTAAAACCCCTAAAA
14849678 GATCCGAAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
14 9 0.14
15 10 0.15
16 32 0.49
17 14 0.22
ACGTcount: A:0.47, C:0.33, G:0.01, T:0.19
Consensus pattern (16 bp):
TCTAAAACCCCTAAAA
Found at i:14849643 original size:30 final size:31
Alignment explanation
Indices: 14849587--14849677 Score: 94
Period size: 30 Copynumber: 2.9 Consensus size: 31
14849577 CTAGGTTTCT
* *
14849587 AAAACCCCTAAAATCTAATATCCCCTAAAATCC
1 AAAACCCCTAAAATCCAA-A-ACCCTAAAATCC
* * *
14849620 AAAATCCCTTAAATCC-AAACCCTAAAATCT
1 AAAACCCCTAAAATCCAAAACCCTAAAATCC
* *
14849650 GAAACCCCTAAAATCCAAAACCCCAAAA
1 AAAACCCCTAAAATCCAAAACCCTAAAA
14849678 GATCCGAAAT
Statistics
Matches: 48, Mismatches: 9, Indels: 4
0.79 0.15 0.07
Matches are distributed among these distances:
30 23 0.48
31 11 0.23
32 1 0.02
33 13 0.27
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.18
Consensus pattern (31 bp):
AAAACCCCTAAAATCCAAAACCCTAAAATCC
Found at i:14849766 original size:22 final size:22
Alignment explanation
Indices: 14849724--14849766 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
14849714 AACCCTTAAA
*
14849724 TTAAAACCCCAAACCTCAAATT
1 TTAAAACCCCAAACCTAAAATT
*
14849746 TTAAAA-CCGAAACCCTAAAAT
1 TTAAAACCCCAAA-CCTAAAAT
14849767 CTTCAAACTC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.49, C:0.28, G:0.02, T:0.21
Consensus pattern (22 bp):
TTAAAACCCCAAACCTAAAATT
Found at i:14849781 original size:30 final size:30
Alignment explanation
Indices: 14849746--14849854 Score: 91
Period size: 29 Copynumber: 3.6 Consensus size: 30
14849736 ACCTCAAATT
*
14849746 TTAAAACCGAAACCCTAAAATCTTC-AAA-C
1 TTAAAACC-AAACCCTAAAACCTTCTAAACC
* *
14849775 TCTAAAATCAAAACCCT-AAACCTTCTATACC
1 T-TAAAA-CCAAACCCTAAAACCTTCTAAACC
* *
14849806 TTAAAACCAAACCCTAAAACCCTC-AAAAC
1 TTAAAACCAAACCCTAAAACCTTCTAAACC
* *
14849835 TTAAATCAAAACCCTTAAAA
1 TTAAAACCAAACCC-TAAAA
14849855 TCCGAATCTT
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
29 31 0.48
30 31 0.48
31 3 0.05
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.21
Consensus pattern (30 bp):
TTAAAACCAAACCCTAAAACCTTCTAAACC
Found at i:14849788 original size:58 final size:58
Alignment explanation
Indices: 14849720--14849848 Score: 147
Period size: 58 Copynumber: 2.2 Consensus size: 58
14849710 TCCAAACCCT
* ** * *
14849720 TAAATTAAAACCCCAAACC-TC-AAATTTTAAAACCGAAACCCTAAAATCTTCAAACTC
1 TAAATCAAAACCCCAAACCTTCTAAACCTTAAAACC-AAACCCTAAAACCCTCAAACTC
* *
14849777 TAAAATCAAAACCCTAAACCTTCTATACCTTAAAACCAAACCCTAAAACCCTCAAAACT-
1 T-AAATCAAAACCCCAAACCTTCTAAACCTTAAAACCAAACCCTAAAACCCTC-AAACTC
14849836 TAAATCAAAACCC
1 TAAATCAAAACCC
14849849 TTAAAATCCG
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
57 1 0.02
58 28 0.46
59 17 0.28
60 15 0.25
ACGTcount: A:0.48, C:0.30, G:0.01, T:0.21
Consensus pattern (58 bp):
TAAATCAAAACCCCAAACCTTCTAAACCTTAAAACCAAACCCTAAAACCCTCAAACTC
Found at i:14849818 original size:29 final size:27
Alignment explanation
Indices: 14849727--14849849 Score: 86
Period size: 29 Copynumber: 4.3 Consensus size: 27
14849717 CCTTAAATTA
* *
14849727 AAACCCCAAACC-TCAAATTTTAAAACC
1 AAACCCTAAACCTTCAAA-CTTAAAACC
* *
14849754 GAAACCCTAAAATCTTCAAACTCTAAAATCA
1 -AAACCCT-AAACCTTCAAACT-TAAAA-CC
*
14849785 AAACCCTAAACCTTCTATACCTTAAAACC
1 AAACCCTAAACCTTC-A-AACTTAAAACC
* * *
14849814 AAACCCTAAAACCCTCAAAACTTAAATCA
1 AAACCCT-AAACCTTC-AAACTTAAAACC
14849843 AAACCCT
1 AAACCCT
14849850 TAAAATCCGA
Statistics
Matches: 76, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
28 6 0.08
29 35 0.46
30 31 0.41
31 4 0.05
ACGTcount: A:0.47, C:0.32, G:0.01, T:0.20
Consensus pattern (27 bp):
AAACCCTAAACCTTCAAACTTAAAACC
Found at i:14859192 original size:355 final size:354
Alignment explanation
Indices: 14858427--14859669 Score: 1597
Period size: 355 Copynumber: 3.5 Consensus size: 354
14858417 ATATTGCCAC
* ** * ** * *
14858427 ACAAATTTTAACACGGTTATTGAAGGCATATTTCCAAGTGAGATGCCTTTAATAATTTCTAGCAC
1 ACAAATTCTAACACTATTATTGAAGGCATATATCCAAGAAAGATGCCTTTAATAATTCCTATCAC
* * * * *
14858492 AGTTTGTATATAATTAGTGAAGGCGGTTGC-GAAAAACAACACCTTCAATAATTTCTCTAAAAAA
66 AGTTTGTAGATAATTACTGAAGGCGATTGCAG-ATAACAACGCCTTCAATAATTTCTCT-AAAAA
* * * * * *
14858556 ATTTTTTCGGATTAGTAAAGGCGTC--TT-TTATGACACGCCTTTAATATACCACAATGGTTATA
129 ATTTTTTTGGATTATTAAAGGCGTCTTTTATTATGACACGCCTTCAATATACCACGATGGTAATG
* *
14858618 GAAGGCGTTTATTCAAAAAAGTGC-CTTCAATATACCTTTAAATTTAGTAATCCATTACTAAAGG
194 GAAGGCGTTTATT-AAAAAAG-GCACTTCAATATACCTTTAAACTTAGTAATCCATTACTGAAGG
** * * *
14858682 CATTTGTTAATAACAGACACCTTTAAAATTTTCCCATTAAAAATTTTGAGAATTATTAAATGAGT
257 CATTTGTTAATAACAGATGCCTTCAAAATTTTCTCACTAAAAA-TTTGAGAATTATTAAA-G-GT
* *
14858747 -CTTT-TATTGTAAAATACCTTTTATATACCGTCAT
319 ATTTTCTATTGTAAAATGCCTTTTATATACCGTCAT
* * *
14858781 AAAAATTCTAACACTGTTATTGAAGGCATATATCCAAGAAAGATGCCTTTAATAATTCATATCAC
1 ACAAATTCTAACACTATTATTGAAGGCATATATCCAAGAAAGATGCCTTTAATAATTCCTATCAC
** * * *
14858846 AGTTTGTAGATAATTACTGAAGATGGTTGTAGATAACAATGCCTTCAATAATTT-TCCT-AAAAA
66 AGTTTGTAGATAATTACTGAAGGCGATTGCAGATAACAACGCCTTCAATAATTTCT-CTAAAAAA
* * *
14858909 TTTTTTTCAGATTATTAAATGTGTCTTTTATTATGACACGCCTTCAATATACCACGATGGTAATG
130 TTTTTTT-GGATTATTAAAGGCGTCTTTTATTATGACACGCCTTCAATATACCACGATGGTAATG
* * * *
14858974 GAAGGCGTTTATTAAAAAAGACATATTCAATATTCCTTTAAACTTAGTAATCCATTATTGAAGGC
194 GAAGGCGTTTATTAAAAAAGGCA-CTTCAATATACCTTTAAACTTAGTAATCCATTACTGAAGGC
* *
14859039 GTTTGTTAATAATAGATGCCTTCAAAATTTTCTCACTAAAAATTTGAGAATTATTAAAGGTATTT
258 ATTTGTTAATAACAGATGCCTTCAAAATTTTCTCACTAAAAATTTGAGAATTATTAAAGGTATTT
* * **
14859104 TCTATTGTAAAATGCCTTCTATATACCATTTT
323 TCTATTGTAAAATGCCTTTTATATACCGTCAT
*
14859136 ACAAATTCTAACACTATTATTGAAGGCATATATCCAAGAAAGATGCCTTTAATAATTCCTATCAT
1 ACAAATTCTAACACTATTATTGAAGGCATATATCCAAGAAAGATGCCTTTAATAATTCCTATCAC
* *
14859201 AGTTTGTAGATAATTACTGAAGGTGATTACAGATAACAACGCCTTCAATAATTTCTCTAAAAAAA
66 AGTTTGTAGATAATTACTGAAGGCGATTGCAGATAACAACGCCTTCAATAATTTCTCT--AAAAA
* * *
14859266 ATTTTCTTGGATTATTAAAGGCATTTTTTATTATGACACGCCTTCAATATACCACGATGGTAATG
129 ATTTTTTTGGATTATTAAAGGCGTCTTTTATTATGACACGCCTTCAATATACCACGATGGTAATG
* *
14859331 AAAGGCGTTTATTAGAAAAGGCACCTTCAATATACCTTTAAACTTAGTAATCCATTACTGAAGGC
194 GAAGGCGTTTATTAAAAAAGGCA-CTTCAATATACCTTTAAACTTAGTAATCCATTACTGAAGGC
* * * *
14859396 ATTTGTTAATAACAGATGCCTTCAAAATTTTTTCACTAAATATTTTGAGAATTATTAAAGGCATC
258 ATTTGTTAATAACAGATGCCTTCAAAATTTTCTCACTAAA-AATTTGAGAATTATTAAAGGTATT
* * * *
14859461 TTCTACTGTAAAAGGCCTTTTATATATCGTCAC
322 TTCTATTGTAAAATGCCTTTTATATACCGTCAT
* ** *
14859494 ACAAATTCTAACACTATTATTGAAGGCGTATATCCAAGAAAGACACCTTTAATAATTCCTATCAT
1 ACAAATTCTAACACTATTATTGAAGGCATATATCCAAGAAAGATGCCTTTAATAATTCCTATCAC
* * * *
14859559 AGTTTGTATATAATTACTGAAGGCAATTGCAGATAACAACGCCTTCAATAATTTC-CCAAAAATT
66 AGTTTGTAGATAATTACTGAAGGCGATTGCAGATAACAACGCCTTCAATAATTTCTCTAAAAAAT
* * * *
14859623 TTTTTTGAATTATTAAAGGCGTCTTTTATTATAAAATGCCTTCAATA
131 TTTTTTGGATTATTAAAGGCGTCTTTTATTATGACACGCCTTCAATA
14859670 ATTTGTTATA
Statistics
Matches: 777, Mismatches: 97, Indels: 29
0.86 0.11 0.03
Matches are distributed among these distances:
352 11 0.01
353 16 0.02
354 107 0.14
355 209 0.27
356 116 0.15
357 148 0.19
358 170 0.22
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (354 bp):
ACAAATTCTAACACTATTATTGAAGGCATATATCCAAGAAAGATGCCTTTAATAATTCCTATCAC
AGTTTGTAGATAATTACTGAAGGCGATTGCAGATAACAACGCCTTCAATAATTTCTCTAAAAAAT
TTTTTTGGATTATTAAAGGCGTCTTTTATTATGACACGCCTTCAATATACCACGATGGTAATGGA
AGGCGTTTATTAAAAAAGGCACTTCAATATACCTTTAAACTTAGTAATCCATTACTGAAGGCATT
TGTTAATAACAGATGCCTTCAAAATTTTCTCACTAAAAATTTGAGAATTATTAAAGGTATTTTCT
ATTGTAAAATGCCTTTTATATACCGTCAT
Found at i:14866755 original size:2 final size:2
Alignment explanation
Indices: 14866748--14866776 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14866738 GTAAAATGCA
14866748 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
14866777 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:14868906 original size:560 final size:566
Alignment explanation
Indices: 14867829--14869427 Score: 2234
Period size: 560 Copynumber: 2.8 Consensus size: 566
14867819 TCTAACATTG
14867829 CATTAATTATTTTGATTTGTTTTCATATAAATTTTATTAATTTAAAAGATATTTATTTTGACTAA
1 CATTAATTATTTTGATTTGTTTTCATATAAATTTTATTAATTTAAAAGATATTTATTTTGACTAA
* ** * *
14867894 ATTAGGTATATTTATTTTCTTATAACTATCAAATATTATTGCCTTTTGTAATTATGTTATAATTC
66 ATTAGGTATATTTATTTTCTTATAAATATCAAATATTATT-ATTTTTATAATTACGTTATAATTC
* *
14867959 AATTATCTTAAATCACTTTCAAATAAATTCAATTCTTAATTTTAAACACTAAAAATGAACACTAC
130 AATTATCTTAAATCACTTTCAAATAAATTCAATTCTTAATTTTAAACACT-AAAATAAACACTAT
* * *
14868024 AAATAAAAAATATACTTTAAAAGCATTGACTATTTGATA-TCTGTAATTATAGTATTTAATTAAG
194 AAATAAGAAATATACTTTAAAAGCATTGACTATTTGATATTC-ATAATTTTAGTATTTAATTAAG
* *
14868088 AAATAATTTATGTAATGAATATATAAATCATATAATGCTAAGAATTCAAACCTAAAATAAAAAGC
258 AAATAATTTATGTAATGAATATATAAGTCATATAATGCTAAGAATTCAAACCTAAAATAAAAGGC
14868153 CTAATTAATTGCAAACATATTTTTTATATTTCTTTCTATATAAGTATTAATTACAATCACACATA
323 CTAATTAATTGCAAACATATTTTTTATATTTCTTTCTATATAAGTATTAATTACAATCACACATA
* *
14868218 TTTACCAACATAATTTACTATTTCAAAATGCATTCTCTAATAA-TCCATTATAACTACTCTACAT
388 TTTACCAACATAATTTACTATTTCAAAATGTATTCTCTAATAACT-CATTATAATTACTCTACAT
* * *
14868282 AAATTACTCTCAATTAGTCTTATATAAATATATAAAAGTCCAAACTTTTAAGAAAAAAG-AAAAA
452 AAATTACTCTCAATTAATCTTATATAAATATATAAAAGGCCAAACTTTTAACAAAAAAGAAAAAA
* * *
14868346 -A-AA-AT-C-C-A-ATGTGGATAGTTTTGAACAATCACCATATGTCTTA
517 TAGAAGATCCTCTACATGTGGATAGTCTTAAACAATCACAATATGTCTTA
* *
14868389 TATTAATTATTTTGATTTGTTTTCATATAAATTTTATTAATTTAAAAGATATTTACTTTGACTAA
1 CATTAATTATTTTGATTTGTTTTCATATAAATTTTATTAATTTAAAAGATATTTATTTTGACTAA
*** * *
14868454 ATTACACATATTTATTTTCTTATAAATATAAAATATTATTATATTTTATAATTACGTTGTAATTC
66 ATTAGGTATATTTATTTTCTTATAAATATCAAATATTATTAT-TTTTATAATTACGTTATAATTC
*
14868519 AATTATCTTAAATCACTTTCAAATAAATTTAATTCTTAATTTTAAACACTAAACATAAACACTAT
130 AATTATCTTAAATCACTTTCAAATAAATTCAATTCTTAATTTTAAACACTAAA-ATAAACACTAT
* *
14868584 AAATAAGAAATATACTTTAAAAACATTAACTATTTGATATTCATAATTTTAGTATTTAATTAAGA
194 AAATAAGAAATATACTTTAAAAGCATTGACTATTTGATATTCATAATTTTAGTATTTAATTAAGA
* ** *
14868649 AATAATTTATGTAATAAATATATAAGTCATATAATATTAAGAATTTAAACCTAAAATAAAAGGCC
259 AATAATTTATGTAATGAATATATAAGTCATATAATGCTAAGAATTCAAACCTAAAATAAAAGGCC
*
14868714 TAATTAATTGCAAACATATTTTTTGTATTT-TTTCTATATAAGTATTAATTACAATCACACATAT
324 TAATTAATTGCAAACATATTTTTTATATTTCTTTCTATATAAGTATTAATTACAATCACACATAT
* * *
14868778 TTACCAACATAATTTACTATTTCAAAATATATTCTCAAATAACTCATTATAATTACTTTACATAA
389 TTACCAACATAATTTACTATTTCAAAATGTATTCTCTAATAACTCATTATAATTACTCTACATAA
*
14868843 ATTACTCTCAATTAATCTTATATAAATATAT-AAAGGGCAAAGCTTTTAACAAAAAAGGAAAAAA
454 ATTACTCTCAATTAATCTTATATAAATATATAAAAGGCCAAA-CTTTTAACAAAAAA-GAAAAAA
* * *
14868907 TTTTGATGTGAATGATCCATTCTTTTGACATGTGGATGGTCTTAAACACTCACAATATGTTTTA
517 ---T-A---GAA-GATCC--TC---T-ACATGTGGATAGTCTTAAACAATCACAATATGTCTTA
* *
14868971 CATCAATTATTTTGACTT-TTTTCATAT-AATTTT-TTAATTTAAAAGATATTTATTTTGACTAA
1 CATTAATTATTTTGATTTGTTTTCATATAAATTTTATTAATTTAAAAGATATTTATTTTGACTAA
* * * *
14869033 ATTAGGTA-ATTTATTTTCTTATAAATATCAAATATTGTTGCTTTTTATAATTACGCTACAATTC
66 ATTAGGTATATTTATTTTCTTATAAATATCAAATATTATT-ATTTTTATAATTACGTTATAATTC
*
14869097 AATTATCTTAAATCACTTTCAAATAAATTCAATTCTTAA--TT------T----TAAACGCTATA
130 AATTATCTTAAATCACTTTCAAATAAATTCAATTCTTAATTTTAAACACTAAAATAAACACTATA
* * *
14869150 AATAGGAAATATACTTTAAAAGCA--GACTATTTGATATCCATAATTTTAGTATTTAATTAAAAA
195 AATAAGAAATATACTTTAAAAGCATTGACTATTTGATATTCATAATTTTAGTATTTAATTAAGAA
* * * *
14869213 ATAGTTTATGTAAGGAATATATAAGTCATAAAATGCTAAGAATTCAAACCTAAAATTAAAGGCCT
260 ATAATTTATGTAATGAATATATAAGTCATATAATGCTAAGAATTCAAACCTAAAATAAAAGGCCT
* *
14869278 AATTAATAGTAAACATATTTTTTATATTTCTTTCTATATAAGTATTAATTACAATCACACATATT
325 AATTAATTGCAAACATATTTTTTATATTTCTTTCTATATAAGTATTAATTACAATCACACATATT
*
14869343 TACCAACATAATTTACTATTTCAAAATGTATTCTCTAATAACCCATTATAATTACTCTACATAAA
390 TACCAACATAATTTACTATTTCAAAATGTATTCTCTAATAACTCATTATAATTACTCTACATAAA
*
14869408 TTACTCTTAATTAAT-TTATA
455 TTACTCTCAATTAATCTTATA
14869428 AAAGGCTTTA
Statistics
Matches: 931, Mismatches: 78, Indels: 57
0.87 0.07 0.05
Matches are distributed among these distances:
558 8 0.01
559 138 0.15
560 322 0.35
561 7 0.01
563 124 0.13
564 110 0.12
565 32 0.03
566 1 0.00
570 3 0.00
572 2 0.00
573 1 0.00
576 3 0.00
578 86 0.09
579 34 0.04
580 6 0.01
581 10 0.01
582 44 0.05
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.41
Consensus pattern (566 bp):
CATTAATTATTTTGATTTGTTTTCATATAAATTTTATTAATTTAAAAGATATTTATTTTGACTAA
ATTAGGTATATTTATTTTCTTATAAATATCAAATATTATTATTTTTATAATTACGTTATAATTCA
ATTATCTTAAATCACTTTCAAATAAATTCAATTCTTAATTTTAAACACTAAAATAAACACTATAA
ATAAGAAATATACTTTAAAAGCATTGACTATTTGATATTCATAATTTTAGTATTTAATTAAGAAA
TAATTTATGTAATGAATATATAAGTCATATAATGCTAAGAATTCAAACCTAAAATAAAAGGCCTA
ATTAATTGCAAACATATTTTTTATATTTCTTTCTATATAAGTATTAATTACAATCACACATATTT
ACCAACATAATTTACTATTTCAAAATGTATTCTCTAATAACTCATTATAATTACTCTACATAAAT
TACTCTCAATTAATCTTATATAAATATATAAAAGGCCAAACTTTTAACAAAAAAGAAAAAATAGA
AGATCCTCTACATGTGGATAGTCTTAAACAATCACAATATGTCTTA
Found at i:14871562 original size:22 final size:22
Alignment explanation
Indices: 14871537--14871582 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
14871527 TCAGTGAGAG
14871537 AAGAACCAAAGTTAGATGTAGC
1 AAGAACCAAAGTTAGATGTAGC
14871559 AAGAACCAAAGTTAGATGTAGC
1 AAGAACCAAAGTTAGATGTAGC
14871581 AA
1 AA
14871583 AAATAGGCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.13, G:0.22, T:0.17
Consensus pattern (22 bp):
AAGAACCAAAGTTAGATGTAGC
Found at i:14872402 original size:23 final size:23
Alignment explanation
Indices: 14872357--14872423 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 23
14872347 ATTAATTAAT
* *
14872357 AATTAAATATATTAA-TAATAAAA
1 AATTAAA-AAATTAATTAAAAAAA
14872380 AATTAAAAAATTAATTAAAAAAA
1 AATTAAAAAATTAATTAAAAAAA
*
14872403 GA--AAAAAATT--TTAAAAAAA
1 AATTAAAAAATTAATTAAAAAAA
14872422 AA
1 AA
14872424 GACAGAGGTG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 10 0.26
21 8 0.21
22 6 0.15
23 15 0.38
ACGTcount: A:0.72, C:0.00, G:0.01, T:0.27
Consensus pattern (23 bp):
AATTAAAAAATTAATTAAAAAAA
Found at i:14874890 original size:3 final size:3
Alignment explanation
Indices: 14874884--14874912 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14874874 TAATAATAAT
14874884 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
14874913 TAATAATAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:14875516 original size:117 final size:117
Alignment explanation
Indices: 14875395--14875611 Score: 321
Period size: 117 Copynumber: 1.9 Consensus size: 117
14875385 ATTTGGACTG
* * *
14875395 AGCCAAGATCTAGTGACCGGGATGAAACCACGAGTCAAATGAGGCGACCAAGATCAAGTCAAGG-
1 AGCCAAGATCAAGTGACCGGGATAAAACCACGAGTCAAATGAGGCGACCAAGACCAAGT-AAGGA
*
14875459 TT-AAGAATAAATGATTGGGATGAAACCATGAATCATGAGAAATAATCTGGATA
65 TTGAA-AATAAATGATTGGGATGAAACCACGAATCATGAGAAATAATCTGGATA
* * * *
14875512 AGCCAAGATCAAGTGATCGGGATAAAATCATGAGTCAAATGAGGCGACCAAGACCAAGTTAGGAT
1 AGCCAAGATCAAGTGACCGGGATAAAACCACGAGTCAAATGAGGCGACCAAGACCAAGTAAGGAT
*
14875577 TGAAAATAAATTATTGGGATGAAACCACGAATCAT
66 TGAAAATAAATGATTGGGATGAAACCACGAATCAT
14875612 AAGAGGCGAC
Statistics
Matches: 89, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
116 3 0.03
117 84 0.94
118 2 0.02
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.19
Consensus pattern (117 bp):
AGCCAAGATCAAGTGACCGGGATAAAACCACGAGTCAAATGAGGCGACCAAGACCAAGTAAGGAT
TGAAAATAAATGATTGGGATGAAACCACGAATCATGAGAAATAATCTGGATA
Found at i:14875716 original size:178 final size:179
Alignment explanation
Indices: 14875413--14875742 Score: 432
Period size: 178 Copynumber: 1.8 Consensus size: 179
14875403 TCTAGTGACC
* * * * *
14875413 GGGATGAAACCACGAGTCAAATGAGGCGACCAAGATCAAGTCAAGGTTAAGAATAAATGATTGGG
1 GGGATGAAACCACGAATCAAATGAGGCGACCAAGATCAAGTCAAGGTAAAAAATAAATGATCGGA
* * * * * *
14875478 ATGAAACCATGAATCATGAGAAATAATCTGGATAAGCCAAGATCAAGTGATCGGGATAAAA-TCA
66 ATGAAACCATGAATCATAAAAAATAATATAGATAAGCCAAGATCAAGTGACCGAGATAAAACT-A
*
14875542 TGAGTCAAATGAGGCGACCAAGACCAAGTTAGGATTGAAAATAAATTATT
130 CGAGTCAAATGAGGCGACCAAGACCAAGTTAGGATTGAAAATAAATTATT
* **
14875592 GGGATGAAACCACGAATCATAA-GAGGCGACCAGGATTGA-TCAAGGTAAAAAATAAATGATCGG
1 GGGATGAAACCACGAATCA-AATGAGGCGACCAAGATCAAGTCAAGGTAAAAAATAAATGATCGG
* * *
14875655 AATGAAATCATGAATCATAAAAAATGATATAGATAAGCTAAGATCAAGTGACCGAGATAAAACTA
65 AATGAAACCATGAATCATAAAAAATAATATAGATAAGCCAAGATCAAGTGACCGAGATAAAACTA
* * *
14875720 CGAGTCCAATGAGGTGATCAAGA
130 CGAGTCAAATGAGGCGACCAAGA
14875743 TCGAGTCAAG
Statistics
Matches: 128, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
178 93 0.73
179 33 0.26
180 2 0.02
ACGTcount: A:0.44, C:0.13, G:0.23, T:0.19
Consensus pattern (179 bp):
GGGATGAAACCACGAATCAAATGAGGCGACCAAGATCAAGTCAAGGTAAAAAATAAATGATCGGA
ATGAAACCATGAATCATAAAAAATAATATAGATAAGCCAAGATCAAGTGACCGAGATAAAACTAC
GAGTCAAATGAGGCGACCAAGACCAAGTTAGGATTGAAAATAAATTATT
Found at i:14875779 original size:178 final size:179
Alignment explanation
Indices: 14875416--14875781 Score: 416
Period size: 178 Copynumber: 2.1 Consensus size: 179
14875406 AGTGACCGGG
* * * * *
14875416 ATGAAACCACGAGTCAAATGAGGCGACCAAGATCAAGTCAAGGTTAAGAATAAATGATTGGGATG
1 ATGAAACCACGAATCAAATGAGGCGACCAAGATCAAGTCAAGGTAAAAAATAAATGATCGGAATG
* * * * * * *
14875481 AAACCATGAATCATGAGAAATAATCTGGATAAGCCAAGATCAAGTGATCGGGATAAAATCATGAG
66 AAACCATGAATCATAAAAAATAATATAGATAAGCCAAGATCAAGTGACCGAGATAAAATCACGAG
* * * ** *
14875546 TCAAATGAGGCGACCAAGACCAAGTTAGGATTGAAAATAAATTATTGGG
131 TCAAATGAGGCGACCAAGACCAAGTAAGGATCGAAAATAAATGATCAGA
* **
14875595 ATGAAACCACGAATCATAA-GAGGCGACCAGGATTGA-TCAAGGTAAAAAATAAATGATCGGAAT
1 ATGAAACCACGAATCA-AATGAGGCGACCAAGATCAAGTCAAGGTAAAAAATAAATGATCGGAAT
* * *
14875658 GAAATCATGAATCATAAAAAATGATATAGATAAGCTAAGATCAAGTGACCGAGATAAAA-CTACG
65 GAAACCATGAATCATAAAAAATAATATAGATAAGCCAAGATCAAGTGACCGAGATAAAATC-ACG
* * * * *
14875722 AGTCCAATGAGGTGATCAAGATCGAGTCAAGG-TCGAAAATAAATGATCAGA
129 AGTCAAATGAGGCGACCAAGACCAAGT-AAGGATCGAAAATAAATGATCAGA
14875773 ATGAAACCA
1 ATGAAACCA
14875782 TAAGTCATGT
Statistics
Matches: 155, Mismatches: 29, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
177 1 0.01
178 120 0.77
179 32 0.21
180 2 0.01
ACGTcount: A:0.45, C:0.14, G:0.22, T:0.19
Consensus pattern (179 bp):
ATGAAACCACGAATCAAATGAGGCGACCAAGATCAAGTCAAGGTAAAAAATAAATGATCGGAATG
AAACCATGAATCATAAAAAATAATATAGATAAGCCAAGATCAAGTGACCGAGATAAAATCACGAG
TCAAATGAGGCGACCAAGACCAAGTAAGGATCGAAAATAAATGATCAGA
Found at i:14875896 original size:89 final size:87
Alignment explanation
Indices: 14875745--14876057 Score: 360
Period size: 89 Copynumber: 3.5 Consensus size: 87
14875735 GATCAAGATC
* * * *
14875745 GAGTCAAGGTCGAAAATAAATGATCAGAATGAAACCAT-AAGTCATGTGATCGGAACAAAACCAC
1 GAGTCGAGGTCGAAAATGAATGATCGGGATGAAACCATGAA-TCATGTGATCGG-ACAAAACCAC
* * *
14875809 GAGTTGAAATAAAAGCAACCAAGACT
64 GAGTCGAAAT-AAAGCGACCAGGA-T
* * * * *
14875835 AAGTCGAGGTTGAAAATGAATGTTCGGGATG-AATCATGAATCATGTGATCAGGACGAAACCACG
1 GAGTCGAGGTCGAAAATGAATGATCGGGATGAAACCATGAATCATGTGATC-GGACAAAACCACG
* *
14875899 AGTCGAAATAAAGTGATCAGGAT
65 AGTCGAAATAAAGCGACCAGGAT
* * * *
14875922 CGAGTCAAGGTCAAAAATGAATGATCGGGATGAAACCATTAATCATGTGACTGGGACAAAACCAC
1 -GAGTCGAGGTCGAAAATGAATGATCGGGATGAAACCATGAATCATGTGA-TCGGACAAAACCAC
*
14875987 GAGTCAAAATAAAGCGACCAGGATT
64 GAGTCGAAATAAAGCGACCAGGA-T
*
14876012 GAGTCGAGGTCGAAAATGAATGATCAGGATGAAACCATGAATCATG
1 GAGTCGAGGTCGAAAATGAATGATCGGGATGAAACCATGAATCATG
14876058 AGAAATGATC
Statistics
Matches: 187, Mismatches: 30, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
87 1 0.01
88 35 0.19
89 121 0.65
90 30 0.16
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.19
Consensus pattern (87 bp):
GAGTCGAGGTCGAAAATGAATGATCGGGATGAAACCATGAATCATGTGATCGGACAAAACCACGA
GTCGAAATAAAGCGACCAGGAT
Found at i:14875925 original size:178 final size:178
Alignment explanation
Indices: 14875733--14876057 Score: 458
Period size: 178 Copynumber: 1.8 Consensus size: 178
14875723 GTCCAATGAG
*
14875733 GTGATCAAGATCGAGTCAAGGTCGAAAATAAATGATCAGAATGAAACCA-TAAGTCATGTGA-TC
1 GTGATCAAGATCGAGTCAAGGTCAAAAATAAATGATCAGAATGAAACCATTAA-TCATGTGACT-
** * * *
14875796 GGAACAAAACCACGAGTTGAAATAAAAGCAACCAAGACTAAGTCGAGGTTGAAAATGAATGTTCG
64 GGAACAAAACCACGAGTCAAAAT-AAAGCAACCAAGACTAAGTCGAGGTCGAAAATGAATGATCA
*
14875861 GGATG-AATCATGAATCATGTGATCAGGACGAAACCACGAGTCGAAATAAA
128 GGATGAAACCATGAATCATGTGATCAGGACGAAACCACGAGTCGAAATAAA
* * * *
14875911 GTGATCAGGATCGAGTCAAGGTCAAAAATGAATGATCGGGATGAAACCATTAATCATGTGACTGG
1 GTGATCAAGATCGAGTCAAGGTCAAAAATAAATGATCAGAATGAAACCATTAATCATGTGACTGG
* * * * *
14875976 GACAAAACCACGAGTCAAAATAAAGCGACCAGGATTGAGTCGAGGTCGAAAATGAATGATCAGGA
66 AACAAAACCACGAGTCAAAATAAAGCAACCAAGACTAAGTCGAGGTCGAAAATGAATGATCAGGA
14876041 TGAAACCATGAATCATG
131 TGAAACCATGAATCATG
14876058 AGAAATGATC
Statistics
Matches: 128, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
177 39 0.30
178 85 0.66
179 4 0.03
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.19
Consensus pattern (178 bp):
GTGATCAAGATCGAGTCAAGGTCAAAAATAAATGATCAGAATGAAACCATTAATCATGTGACTGG
AACAAAACCACGAGTCAAAATAAAGCAACCAAGACTAAGTCGAGGTCGAAAATGAATGATCAGGA
TGAAACCATGAATCATGTGATCAGGACGAAACCACGAGTCGAAATAAA
Found at i:14887069 original size:13 final size:13
Alignment explanation
Indices: 14887051--14887075 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14887041 CCTCCCTCTC
14887051 TTTTTTTAGAAAT
1 TTTTTTTAGAAAT
14887064 TTTTTTTAGAAA
1 TTTTTTTAGAAA
14887076 AGACAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (13 bp):
TTTTTTTAGAAAT
Found at i:14887119 original size:42 final size:39
Alignment explanation
Indices: 14887063--14887141 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 39
14887053 TTTTTAGAAA
14887063 TTTTTTTTAGAAAAGACAAAATAATTTTTTTCTCTTTTTTT
1 TTTTTTTTAGAAAAGACAAAATAA-TTTTTTC-CTTTTTTT
* * *
14887104 TTTTTTTTTGAAAAAGATAGAATAATTTTTTCCTTTTT
1 TTTTTTTTAG-AAAAGACAAAATAATTTTTTCCTTTTT
14887142 AAAAAAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 6 0.18
41 16 0.47
42 12 0.35
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (39 bp):
TTTTTTTTAGAAAAGACAAAATAATTTTTTCCTTTTTTT
Found at i:14888097 original size:3 final size:3
Alignment explanation
Indices: 14888086--14888121 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
14888076 AAAAAATGAA
*
14888086 AAT ATAT AAT AAT ACT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14888122 ATATAATATG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14888506 original size:15 final size:15
Alignment explanation
Indices: 14888483--14888535 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
14888473 TGATTGTTTT
14888483 TAATAATAATAAAAA
1 TAATAATAATAAAAA
**
14888498 TGGTAATAATATAAAA
1 TAATAATAATA-AAAA
14888514 -AATAATAATAAAAA
1 TAATAATAATAAAAA
14888528 TAAGTAAT
1 TAA-TAAT
14888536 GAAATATATG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
14 4 0.13
15 19 0.61
16 8 0.26
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
TAATAATAATAAAAA
Found at i:14888522 original size:18 final size:18
Alignment explanation
Indices: 14888483--14888530 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
14888473 TGATTGTTTT
**
14888483 TAATAATAATAAAAATGG
1 TAATAATAATAAAAATAA
14888501 TAATAAT-ATAAAAAATAA
1 TAATAATAAT-AAAAATAA
*
14888519 TAATAAAAATAA
1 TAATAATAATAA
14888531 GTAATGAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 2 0.08
18 21 0.84
19 2 0.08
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (18 bp):
TAATAATAATAAAAATAA
Found at i:14888918 original size:15 final size:15
Alignment explanation
Indices: 14888900--14889009 Score: 114
Period size: 15 Copynumber: 7.2 Consensus size: 15
14888890 CCAAAATTTT
14888900 AAAACCTTAAAATCC
1 AAAACCTTAAAATCC
*
14888915 AAAACCTTAAAAGTCT
1 AAAACCTTAAAA-TCC
*
14888931 AGAACCTTAAAATCC
1 AAAACCTTAAAATCC
*
14888946 AAAACCTTAAAAGTCT
1 AAAACCTTAAAA-TCC
*
14888962 AAAATCTTAAAAT-C
1 AAAACCTTAAAATCC
* * *
14888976 TAAACTTTTTAAATCC
1 AAAAC-CTTAAAATCC
*
14888992 AAAACCCTAAAATCC
1 AAAACCTTAAAATCC
14889007 AAA
1 AAA
14889010 CCCCAAAACC
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
14 3 0.04
15 42 0.55
16 31 0.41
ACGTcount: A:0.51, C:0.22, G:0.03, T:0.25
Consensus pattern (15 bp):
AAAACCTTAAAATCC
Found at i:14888940 original size:31 final size:31
Alignment explanation
Indices: 14888877--14889009 Score: 139
Period size: 31 Copynumber: 4.4 Consensus size: 31
14888867 TAAAAAAAAA
* * *
14888877 TTAAAA-CCAAAACC-CAAAATTTTAAAACC
1 TTAAAATCCAAAACCTTAAAAGTCTAAAACC
*
14888906 TTAAAATCCAAAACCTTAAAAGTCTAGAACC
1 TTAAAATCCAAAACCTTAAAAGTCTAAAACC
*
14888937 TTAAAATCCAAAACCTTAAAAGTCTAAAATC
1 TTAAAATCCAAAACCTTAAAAGTCTAAAACC
* * * *
14888968 TTAAAAT-CTAAACTTTTTAAA-TCCAAAACC
1 TTAAAATCCAAAAC-CTTAAAAGTCTAAAACC
*
14888998 CTAAAATCCAAA
1 TTAAAATCCAAA
14889010 CCCCAAAACC
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
29 6 0.07
30 26 0.30
31 55 0.63
ACGTcount: A:0.51, C:0.22, G:0.02, T:0.25
Consensus pattern (31 bp):
TTAAAATCCAAAACCTTAAAAGTCTAAAACC
Found at i:14888951 original size:46 final size:45
Alignment explanation
Indices: 14888900--14889009 Score: 141
Period size: 46 Copynumber: 2.4 Consensus size: 45
14888890 CCAAAATTTT
14888900 AAAACCTTAAAATCCAAAACCTTAAAAGTCTAGAAC-CTTAAAATCC
1 AAAACCTTAAAATCCAAAACCTTAAAA-TCTA-AACTCTTAAAATCC
* * * *
14888946 AAAACCTTAAAAGTCTAAAATCTTAAAATCTAAACTTTTTAAATCC
1 AAAACCTTAAAA-TCCAAAACCTTAAAATCTAAACTCTTAAAATCC
*
14888992 AAAACCCTAAAATCCAAA
1 AAAACCTTAAAATCCAAA
14889010 CCCCAAAACC
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
45 8 0.14
46 35 0.62
47 13 0.23
ACGTcount: A:0.51, C:0.22, G:0.03, T:0.25
Consensus pattern (45 bp):
AAAACCTTAAAATCCAAAACCTTAAAATCTAAACTCTTAAAATCC
Found at i:14889054 original size:22 final size:21
Alignment explanation
Indices: 14889029--14889076 Score: 60
Period size: 23 Copynumber: 2.2 Consensus size: 21
14889019 CTTCGAAACT
*
14889029 TAAACCCAAAATTTCAAAACCC
1 TAAACCCAAAATCTC-AAACCC
*
14889051 TAAAATCCAAAATCTCAAACCC
1 T-AAACCCAAAATCTCAAACCC
14889073 TAAA
1 TAAA
14889077 ATCCAAAACC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 3 0.13
22 8 0.35
23 12 0.52
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (21 bp):
TAAACCCAAAATCTCAAACCC
Found at i:14889077 original size:22 final size:23
Alignment explanation
Indices: 14889034--14889084 Score: 86
Period size: 22 Copynumber: 2.3 Consensus size: 23
14889024 AAACTTAAAC
*
14889034 CCAAAATTTCAAAACCCTAAAAT
1 CCAAAATCTCAAAACCCTAAAAT
14889057 CCAAAATCTC-AAACCCTAAAAT
1 CCAAAATCTCAAAACCCTAAAAT
14889079 CCAAAA
1 CCAAAA
14889085 CCTAAAAATC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
22 18 0.67
23 9 0.33
ACGTcount: A:0.53, C:0.29, G:0.00, T:0.18
Consensus pattern (23 bp):
CCAAAATCTCAAAACCCTAAAAT
Found at i:14889088 original size:14 final size:15
Alignment explanation
Indices: 14889059--14889091 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
14889049 CCTAAAATCC
*
14889059 AAAATCTCAAACCCT
1 AAAATCTCAAAACCT
14889074 AAAATC-CAAAACCT
1 AAAATCTCAAAACCT
14889088 AAAA
1 AAAA
14889092 ATCTAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.58, C:0.27, G:0.00, T:0.15
Consensus pattern (15 bp):
AAAATCTCAAAACCT
Found at i:14889092 original size:15 final size:15
Alignment explanation
Indices: 14889059--14889111 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
14889049 CCTAAAATCC
*
14889059 AAAATCTCAAACCCT-
1 AAAATC-CAAAACCTA
14889074 AAAATCCAAAACCTA
1 AAAATCCAAAACCTA
* *
14889089 AAAATCTAAAATTCTA
1 AAAATCCAAAA-CCTA
14889105 AAAATCC
1 AAAATCC
14889112 TGAATTTTGC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
14 7 0.22
15 16 0.50
16 9 0.28
ACGTcount: A:0.55, C:0.25, G:0.00, T:0.21
Consensus pattern (15 bp):
AAAATCCAAAACCTA
Found at i:14889097 original size:22 final size:22
Alignment explanation
Indices: 14888938--14889100 Score: 69
Period size: 22 Copynumber: 7.3 Consensus size: 22
14888928 TCTAGAACCT
*
14888938 TAAAATCCAAAACCTTAAAAGTC
1 TAAAATCCAAAACC-TAAAAATC
* * ** *
14888961 TAAAATCTTAAAATCTAAACTTT
1 TAAAATC-CAAAACCTAAAAATC
*
14888984 TTAAATCCAAAACCCT-AAAATC
1 TAAAATCCAAAA-CCTAAAAATC
* ** **
14889006 CAAACCCCAAAACCTTCGAAA-C
1 TAAAATCCAAAACC-TAAAAATC
* * ** **
14889028 TTAAACCCAAAATTTCAAAACCC
1 TAAAATCCAAAACCT-AAAAATC
* * **
14889051 TAAAATCCAAAATCTCAAACCC
1 TAAAATCCAAAACCTAAAAATC
14889073 TAAAATCCAAAACCTAAAAATC
1 TAAAATCCAAAACCTAAAAATC
14889095 TAAAAT
1 TAAAAT
14889101 TCTAAAAATC
Statistics
Matches: 102, Mismatches: 32, Indels: 13
0.69 0.22 0.09
Matches are distributed among these distances:
21 3 0.03
22 58 0.57
23 36 0.35
24 5 0.05
ACGTcount: A:0.51, C:0.26, G:0.01, T:0.22
Consensus pattern (22 bp):
TAAAATCCAAAACCTAAAAATC
Found at i:14896234 original size:12 final size:11
Alignment explanation
Indices: 14896206--14896232 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
14896196 TTAGAATAAG
14896206 AAAAATTCAAA
1 AAAAATTCAAA
14896217 AAAAATTCAAA
1 AAAAATTCAAA
14896228 AAAAA
1 AAAAA
14896233 ATATGTACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.78, C:0.07, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAATTCAAA
Found at i:14897316 original size:15 final size:15
Alignment explanation
Indices: 14897296--14897325 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14897286 AAAAGGATAT
*
14897296 TTGCATTTGCATCAC
1 TTGCATCTGCATCAC
14897311 TTGCATCTGCATCAC
1 TTGCATCTGCATCAC
14897326 AAGAAAGACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (15 bp):
TTGCATCTGCATCAC
Found at i:14897730 original size:22 final size:22
Alignment explanation
Indices: 14897687--14897732 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
14897677 AAATTTTAAG
* **
14897687 ATCTATAAGACCTCTGGGCATA
1 ATCTATAAGACCTCCGAACATA
*
14897709 ATCTTTAAGACCTCCGAACATA
1 ATCTATAAGACCTCCGAACATA
14897731 AT
1 AT
14897733 TTTGATTCAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (22 bp):
ATCTATAAGACCTCCGAACATA
Found at i:14897929 original size:132 final size:132
Alignment explanation
Indices: 14897692--14897942 Score: 326
Period size: 132 Copynumber: 1.9 Consensus size: 132
14897682 TTAAGATCTA
* * ** *
14897692 TAAGACCTCTGGGCATAATCTTTAAGACCTCCGAACATAATTTTGATTCATGGTATTGTCCTGAT
1 TAAGACCTCTAGGCATAATCTTTAAGACCTCAGAACATAATTTCAATTCATGGTATTATCCTGAT
* **
14897757 CGATTCTTTATTTTTTTACTTGTGATGTTATCCCAGTCGATTCTATAAGACCTCCGAGCATGATT
66 CGATTCTTTATTTTTTGACTTCAGATGTTATCCCAGTCGATTCTATAAGACCTCCGAGCATGATT
14897822 TT
131 TT
* * ** *
14897824 TAAGATCTCTAGGCATAATCTTTAAGACTTTCAG-GGATAATTTCAATTCATGGTATTATCTTGA
1 TAAGACCTCTAGGCATAATCTTTAAGAC-CTCAGAACATAATTTCAATTCATGGTATTATCCTGA
* * *
14897888 TCGATTCTTTATTTTTTGACTTACAG-TGTTGTCTCAGTCGATTCTATAGGACCTC
65 TCGATTCTTTATTTTTTGACTT-CAGATGTTATCCCAGTCGATTCTATAAGACCTC
14897943 TAGGCATAAT
Statistics
Matches: 101, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
132 97 0.96
133 4 0.04
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (132 bp):
TAAGACCTCTAGGCATAATCTTTAAGACCTCAGAACATAATTTCAATTCATGGTATTATCCTGAT
CGATTCTTTATTTTTTGACTTCAGATGTTATCCCAGTCGATTCTATAAGACCTCCGAGCATGATT
TT
Found at i:14898019 original size:88 final size:88
Alignment explanation
Indices: 14897887--14898085 Score: 274
Period size: 88 Copynumber: 2.3 Consensus size: 88
14897877 TATTATCTTG
* * * *
14897887 ATCGATTCTTTATTTTTTGACTTACAGTGTTGTCTCAGTCGATTCTATAGGACCTCTAGGCATAA
1 ATCGATTCTTTATTTTTTGACTTACAATGTTATCTCAGTCGATTCCATAAGACCTCTAGGCATAA
*
14897952 TTTTGATTCGCGGTGTTGTCTCA
66 TTTTGATTCGCGATGTTGTCTCA
* * *
14897975 ATCGATTCTTTATTTTTTGACTTACAATGTTATCTC-GATTGATTCCGTAAGACCTCTGGGCATA
1 ATCGATTCTTTATTTTTTGACTTACAATGTTATCTCAG-TCGATTCCATAAGACCTCTAGGCATA
*
14898039 ATTTTGATTCGCGATGTTGTCTCG
65 ATTTTGATTCGCGATGTTGTCTCA
* * *
14898063 ATCAATTCCTTACTTTTTGACTT
1 ATCGATTCTTTATTTTTTGACTT
14898086 GCGATGTTGT
Statistics
Matches: 98, Mismatches: 12, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
87 1 0.01
88 97 0.99
ACGTcount: A:0.20, C:0.19, G:0.17, T:0.44
Consensus pattern (88 bp):
ATCGATTCTTTATTTTTTGACTTACAATGTTATCTCAGTCGATTCCATAAGACCTCTAGGCATAA
TTTTGATTCGCGATGTTGTCTCA
Found at i:14898093 original size:88 final size:88
Alignment explanation
Indices: 14897937--14898118 Score: 247
Period size: 88 Copynumber: 2.1 Consensus size: 88
14897927 GATTCTATAG
* * * *
14897937 GACCTCTAGGCATAATTTTGATTCGCGGTGTTGTCTCAATCGATTCTTTATTTTTTGACTTACAA
1 GACCTCTAGGCATAATTTTGATTCGCGATGTTGTCTCAATCAATTCCTTACTTTTTGACTTACAA
* **
14898002 TGTTATCTCGATTGATTCCGTAA
66 TGTTATCCCGATCAATTCCGTAA
* * * *
14898025 GACCTCTGGGCATAATTTTGATTCGCGATGTTGTCTCGATCAATTCCTTACTTTTTGACTTGCGA
1 GACCTCTAGGCATAATTTTGATTCGCGATGTTGTCTCAATCAATTCCTTACTTTTTGACTTACAA
* *
14898090 TGTTGTCCCGATCAATTCTGTAA
66 TGTTATCCCGATCAATTCCGTAA
14898113 GACCTC
1 GACCTC
14898119 CGAGCATGAT
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
88 81 1.00
ACGTcount: A:0.20, C:0.21, G:0.18, T:0.41
Consensus pattern (88 bp):
GACCTCTAGGCATAATTTTGATTCGCGATGTTGTCTCAATCAATTCCTTACTTTTTGACTTACAA
TGTTATCCCGATCAATTCCGTAA
Found at i:14898146 original size:22 final size:22
Alignment explanation
Indices: 14898110--14898156 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14898100 ATCAATTCTG
* * *
14898110 TAAGACCTCCGAGCATGATTTT
1 TAAGACCTCCAAGCATAATCTT
*
14898132 TAAGACCTCTAAGCATAATCTT
1 TAAGACCTCCAAGCATAATCTT
14898154 TAA
1 TAA
14898157 AACTTATGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (22 bp):
TAAGACCTCCAAGCATAATCTT
Found at i:14898213 original size:132 final size:130
Alignment explanation
Indices: 14898034--14898413 Score: 417
Period size: 132 Copynumber: 2.9 Consensus size: 130
14898024 AGACCTCTGG
* * *
14898034 GCATAATTTTGATTCGCGATGTTGTCTCGATCAATTCCTTACTTTTTGACTTGCGATGTTGTCCC
1 GCATAATTTTGATTCGCAATGTTGTCCCGATCAATTCTTTA-TTTTTGACTTGCGATGTTGTCCC
* * **
14898099 GATCAATTCTGTAAGACCTCCGAGCATGATTTTTAAGACCTCTAAGCATAATCTTTAAAACTTAT
65 GATCGATTCTGTAAGACCT-CGAGCATGATTTTTAAGACCTCTAAGCATAATCTTTAAAACCTCC
14898164 G-
129 GA
* * * * *
14898165 GACATAATTTCGATTCGTAATGTTGTCCCGATCGATTCTTTATTTTTTGACTTGCAATATTGTCC
1 G-CATAATTTTGATTCGCAATGTTGTCCCGATCAATTCTTTA-TTTTTGACTTGCGATGTTGTCC
* * * * *
14898230 C-AGTCGATTCTGTAAGACCTTCGAACATGATTTCTAAGACCT-TCAGGCTTAATCTTTAAGACC
64 CGA-TCGATTCTGTAAGACC-TCGAGCATGATTTTTAAGACCTCT-AAGCATAATCTTTAAAACC
14898293 TCCGA
126 TCCGA
* * * * * *
14898298 GCATAATTTTGATTCACAGTGTTATCCCAATCAATTCTTTATTTTTGACTTACGATGTTGTCTCG
1 GCATAATTTTGATTCGCAATGTTGTCCCGATCAATTCTTTATTTTTGACTTGCGATGTTGTCCCG
* **
14898363 ATCGATTCTATAAGACCTTTAGGCATGATTTTTAAGACCTCCT-AGCATAAT
66 ATCGATTCTGTAAGACCTCGA-GCATGATTTTTAAGACCT-CTAAGCATAAT
14898414 TTCAATTCGC
Statistics
Matches: 204, Mismatches: 36, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
130 2 0.01
131 59 0.29
132 140 0.69
133 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.39
Consensus pattern (130 bp):
GCATAATTTTGATTCGCAATGTTGTCCCGATCAATTCTTTATTTTTGACTTGCGATGTTGTCCCG
ATCGATTCTGTAAGACCTCGAGCATGATTTTTAAGACCTCTAAGCATAATCTTTAAAACCTCCGA
Found at i:14898513 original size:110 final size:108
Alignment explanation
Indices: 14898286--14898633 Score: 380
Period size: 110 Copynumber: 3.2 Consensus size: 108
14898276 GCTTAATCTT
* * *
14898286 TAAGACCTCCGAGCATAATTTTGATTCACAGTGTTATCCCAATCAATTCTTTA-TTTTTGACTTA
1 TAAGACCTCC-AGCATAATTTCGATTCACA-TGTTATCCCAATCGATTCTTTATTTTTTGACTTT
* * * * *
14898350 CGATGTTGTCTCGATCGATTCTATAAGACCTTTAGG-CATGATTTT
64 CGGTGTTGTCCCGATCGATTCTGTAAGACCTCT-GGACATGATTTC
* * * *
14898395 TAAGACCTCCTAGCATAATTTCAATTCGCGATGTTATCCCAATTGATTCTTTATTTTTTAACTTT
1 TAAGACCTCC-AGCATAATTTCGATTCAC-ATGTTATCCCAATCGATTCTTTATTTTTTGACTTT
*
14898460 CGGTGTTATCCCGATCGATTCTGTAAGACCTCTGGACATGATTTC
64 CGGTGTTGTCCCGATCGATTCTGTAAGACCTCTGGACATGATTTC
* *
14898505 TAAGACCTCCAGGCATAATTTCGATTCACAATGTTATCCTAATCGATTTTTTATTTTTTGACTTG
1 TAAGACCTCCA-GCATAATTTCGATTCAC-ATGTTATCCCAATCGATTCTTTATTTTTTGACTT-
* * ** *
14898570 T-AGTATTGTCCC-AGTCGATTCTGTAAGACCTCCAGACATAATTTC
63 TCGGTGTTGTCCCGA-TCGATTCTGTAAGACCTCTGGACATGATTTC
* *
14898615 TAAAATCTCCAGGCATAAT
1 TAAGACCTCCA-GCATAAT
14898634 CTTTAGGACC
Statistics
Matches: 204, Mismatches: 29, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
109 49 0.24
110 154 0.75
111 1 0.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (108 bp):
TAAGACCTCCAGCATAATTTCGATTCACATGTTATCCCAATCGATTCTTTATTTTTTGACTTTCG
GTGTTGTCCCGATCGATTCTGTAAGACCTCTGGACATGATTTC
Found at i:14898525 original size:22 final size:22
Alignment explanation
Indices: 14898483--14898526 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14898473 ATCGATTCTG
* *
14898483 TAAGACCTCTGGACATGATTTC
1 TAAGACCTCAGGACATAATTTC
14898505 TAAGACCTCCAGG-CATAATTTC
1 TAAGACCT-CAGGACATAATTTC
14898527 GATTCACAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30
Consensus pattern (22 bp):
TAAGACCTCAGGACATAATTTC
Found at i:14898842 original size:36 final size:35
Alignment explanation
Indices: 14898795--14898896 Score: 123
Period size: 36 Copynumber: 2.8 Consensus size: 35
14898785 ACTTATGGTG
14898795 TTGTCCTAGTCGATTCTTTAATTTTGACTCACAGTA
1 TTGTCC-AGTCGATTCTTTAATTTTGACTCACAGTA
* * *
14898831 TTGTCTCAGTCGATTCTTTAATTTTGACTCGCGGTG
1 TTGTC-CAGTCGATTCTTTAATTTTGACTCACAGTA
* *
14898867 TTGTCCCGATCGATTCTTTACTTTTTGACT
1 TTGTCCAG-TCGATTCTTTA-ATTTTGACT
14898897 TACGATGTTG
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
35 2 0.03
36 47 0.81
37 9 0.16
ACGTcount: A:0.17, C:0.21, G:0.17, T:0.46
Consensus pattern (35 bp):
TTGTCCAGTCGATTCTTTAATTTTGACTCACAGTA
Found at i:14900444 original size:264 final size:265
Alignment explanation
Indices: 14899702--14900492 Score: 1457
Period size: 263 Copynumber: 3.0 Consensus size: 265
14899692 TCAACCATAA
* *
14899702 AACAAACATAAAAAAAATAAAAAAAAATAACACAGTCCACCCCGTTGAAAAGAACCTCAGCGCCA
1 AACAAACATAAAAAAAATAAAAAAAAATAACACAGTCCTCCCCGTTGAAAAGAACCTCAACGCCA
* * *
14899767 AAGCACTCCTATGAC-AAAAAAAATAGAGATCATCAGTTTAGGTTTTC-AAAAAATAATAAAAAA
66 AAGCACTCTTGTGACAAAAAAAAACAGAGATCATCAGTTTAGGTTTTCAAAAAAATAATAAAAAA
14899830 AATGAACACCAAAACTTTGAGCCCCGATCCACGTCGATCAAGGTTGTTTTCGGTGAAAAAAAGAT
131 AATGAACACCAAAACTTTGAGCCCCGATCCACGTCGATCAAGGTTGTTTTCGGTGAAAAAAAGAT
14899895 CGAATCTGGAAAGCTCACGTTAAGGTGAACATTTGAGAGTTTTTTTGGTGTTTTTTGACCACTGA
196 CGAATCTGGAAAGCTCACGTTAAGGTGAACATTTGAGAGTTTTTTTGGTGTTTTTTGACCACTGA
14899960 TGGCG
261 TGGCG
14899965 AACAAACAT-AAAAAAATAAAAAAAAATAACACAGTCCTCCCCGTTGAAAAGAACCTCAACGCCA
1 AACAAACATAAAAAAAATAAAAAAAAATAACACAGTCCTCCCCGTTGAAAAGAACCTCAACGCCA
14900029 AAGCACTCTTGTGACAAAAAAAAACAGAGATCATCAGTTTAGGTTTTCAAAAAAATAA-AAAAAA
66 AAGCACTCTTGTGACAAAAAAAAACAGAGATCATCAGTTTAGGTTTTCAAAAAAATAATAAAAAA
*
14900093 AATGAACACCAAAACTTTGAGCCCCGATCCACGTTGATCAAGGTTGTTTTCGGTGAAAAAAAGAT
131 AATGAACACCAAAACTTTGAGCCCCGATCCACGTCGATCAAGGTTGTTTTCGGTGAAAAAAAGAT
14900158 CGAATCTGGAAAGCTCACGTTAAGGTGAACATTTGAGAGTTTTTTTGGTGTTTTTTGACCACTGA
196 CGAATCTGGAAAGCTCACGTTAAGGTGAACATTTGAGAGTTTTTTTGGTGTTTTTTGACCACTGA
14900223 TGGCG
261 TGGCG
*
14900228 AACAAACATAAAAAAAAT-AAAAAAAATAACACAGTCCTCCCCGTTGAAAAGAACCTCAACACCA
1 AACAAACATAAAAAAAATAAAAAAAAATAACACAGTCCTCCCCGTTGAAAAGAACCTCAACGCCA
14900292 AAGCACTCTTGTGACAAAAAAAAACAGAGATCATCAGTTTAGGTTTTCAAAAAAATAATAAAAAA
66 AAGCACTCTTGTGACAAAAAAAAACAGAGATCATCAGTTTAGGTTTTCAAAAAAATAATAAAAAA
14900357 AATGAACACCAAAACTTTGAGCCCCGATCCACGTCGATCAAGGTTGTTTTCGGTGAAAAAAAGAT
131 AATGAACACCAAAACTTTGAGCCCCGATCCACGTCGATCAAGGTTGTTTTCGGTGAAAAAAAGAT
* * *
14900422 CGAATCTGGAAAGCTCACGTTAAAGTGAACATTTGAGAGTTTTTTTGGTGTTTTTCGACCACCGA
196 CGAATCTGGAAAGCTCACGTTAAGGTGAACATTTGAGAGTTTTTTTGGTGTTTTTTGACCACTGA
14900487 TGGCG
261 TGGCG
14900492 A
1 A
14900493 TCGACATCGC
Statistics
Matches: 513, Mismatches: 11, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
262 66 0.13
263 292 0.57
264 155 0.30
ACGTcount: A:0.41, C:0.18, G:0.17, T:0.24
Consensus pattern (265 bp):
AACAAACATAAAAAAAATAAAAAAAAATAACACAGTCCTCCCCGTTGAAAAGAACCTCAACGCCA
AAGCACTCTTGTGACAAAAAAAAACAGAGATCATCAGTTTAGGTTTTCAAAAAAATAATAAAAAA
AATGAACACCAAAACTTTGAGCCCCGATCCACGTCGATCAAGGTTGTTTTCGGTGAAAAAAAGAT
CGAATCTGGAAAGCTCACGTTAAGGTGAACATTTGAGAGTTTTTTTGGTGTTTTTTGACCACTGA
TGGCG
Found at i:14901408 original size:15 final size:15
Alignment explanation
Indices: 14901368--14901451 Score: 75
Period size: 15 Copynumber: 5.7 Consensus size: 15
14901358 AAAAAAAAAT
14901368 TAAAA-CCAAAACCC
1 TAAAATCCAAAACCC
** *
14901382 -AAAATTTTAAAACCT
1 TAAAA-TCCAAAACCC
14901397 TAAAATCCAAAACCC
1 TAAAATCCAAAACCC
* *
14901412 TCAAAT-CTAAACCC
1 TAAAATCCAAAACCC
* *
14901426 TCAAATTCAAAACCC
1 TAAAATCCAAAACCC
14901441 TAAAATCCAAA
1 TAAAATCCAAA
14901452 CCCCAAAACC
Statistics
Matches: 55, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
13 4 0.07
14 13 0.24
15 34 0.62
16 4 0.07
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (15 bp):
TAAAATCCAAAACCC
Found at i:14901423 original size:29 final size:29
Alignment explanation
Indices: 14901391--14901459 Score: 84
Period size: 29 Copynumber: 2.4 Consensus size: 29
14901381 CAAAATTTTA
* * *
14901391 AAACCTTAAAATCCAAAACCCTCAAATCT
1 AAACCCTAAAATCCAAAACCCTAAAATCC
* *
14901420 AAACCCTCAAATTCAAAACCCTAAAATCC
1 AAACCCTAAAATCCAAAACCCTAAAATCC
*
14901449 AAACCCCAAAA
1 AAACCCTAAAA
14901460 CCTTTGAAAC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.51, C:0.33, G:0.00, T:0.16
Consensus pattern (29 bp):
AAACCCTAAAATCCAAAACCCTAAAATCC
Found at i:14901425 original size:14 final size:14
Alignment explanation
Indices: 14901399--14901458 Score: 68
Period size: 14 Copynumber: 4.2 Consensus size: 14
14901389 TAAAACCTTA
14901399 AAATCCAAAACCCTC
1 AAAT-CAAAACCCTC
*
14901414 AAATCTAAACCCTC
1 AAATCAAAACCCTC
*
14901428 AAATTCAAAACCCTA
1 AAA-TCAAAACCCTC
*
14901443 AAATCCAAACCC-C
1 AAATCAAAACCCTC
14901456 AAA
1 AAA
14901459 ACCTTTGAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
13 3 0.08
14 20 0.51
15 16 0.41
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (14 bp):
AAATCAAAACCCTC
Found at i:14901490 original size:15 final size:15
Alignment explanation
Indices: 14901472--14901504 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
14901462 TTTGAAACCT
*
14901472 AAACCCAAAATTTCA
1 AAACCCAAAATTCCA
14901487 AAACCCAAAATTCCA
1 AAACCCAAAATTCCA
14901502 AAA
1 AAA
14901505 TCTCGAACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.27, G:0.00, T:0.15
Consensus pattern (15 bp):
AAACCCAAAATTCCA
Found at i:14901528 original size:15 final size:15
Alignment explanation
Indices: 14901510--14901553 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14901500 CAAAATCTCG
*
14901510 AACCTTAAAATCCAA
1 AACCTAAAAATCCAA
*
14901525 AACCTAAAAATCTAA
1 AACCTAAAAATCCAA
*
14901540 AATTCTAAAAATCC
1 AA-CCTAAAAATCC
14901554 CAAATTTGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 15 0.62
16 9 0.38
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (15 bp):
AACCTAAAAATCCAA
Found at i:14901558 original size:16 final size:16
Alignment explanation
Indices: 14901516--14901559 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
14901506 CTCGAACCTT
*
14901516 AAAATCCAAAA-CCTA
1 AAAATCCAAAATTCTA
*
14901531 AAAATCTAAAATTCTA
1 AAAATCCAAAATTCTA
*
14901547 AAAATCCCAAATT
1 AAAATCCAAAATT
14901560 TGGCACACAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.57, C:0.20, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAATCCAAAATTCTA
Found at i:14909149 original size:18 final size:18
Alignment explanation
Indices: 14909128--14909183 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
14909118 TTATTATTTT
*
14909128 TTTTCTCTTTCTTTCTTC
1 TTTTCTTTTTCTTTCTTC
* * * *
14909146 TTTTTTTTTTGTCTCTTT
1 TTTTCTTTTTCTTTCTTC
*
14909164 TTTTCTTTTTCCTTCTTC
1 TTTTCTTTTTCTTTCTTC
14909182 TT
1 TT
14909184 CTTCCCTTAT
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.00, C:0.21, G:0.02, T:0.77
Consensus pattern (18 bp):
TTTTCTTTTTCTTTCTTC
Found at i:14909164 original size:13 final size:12
Alignment explanation
Indices: 14909124--14909167 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
14909114 ATTATTATTA
14909124 TTTTTTTTCTCT
1 TTTTTTTTCTCT
* *
14909136 TTCTTTCTTCTTT
1 TT-TTTTTTCTCT
14909149 TTTTTTTGTCTCT
1 TTTTTTT-TCTCT
14909162 TTTTTT
1 TTTTTT
14909168 CTTTTTCCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
12 6 0.23
13 20 0.77
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (12 bp):
TTTTTTTTCTCT
Found at i:14909169 original size:23 final size:24
Alignment explanation
Indices: 14909124--14909173 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
14909114 ATTATTATTA
14909124 TTTTTTTTCTCTTTCTTTCTTCTT
1 TTTTTTTTCTCTTTCTTTCTTCTT
*
14909148 TTTTTTTTGTCTCTT-TTT-TTCTT
1 TTTTTTTTCTCT-TTCTTTCTTCTT
14909171 TTT
1 TTT
14909174 CCTTCTTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 8 0.33
24 14 0.58
25 2 0.08
ACGTcount: A:0.00, C:0.16, G:0.02, T:0.82
Consensus pattern (24 bp):
TTTTTTTTCTCTTTCTTTCTTCTT
Found at i:14918907 original size:18 final size:18
Alignment explanation
Indices: 14918870--14918910 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
14918860 TGAATCCTGT
**
14918870 CAAATGTACATTTGGTGC
1 CAAATGTACATTTGAAGC
14918888 CAAATGTACATTTGAAGC
1 CAAATGTACATTTGAAGC
14918906 CAAAT
1 CAAAT
14918911 CAGAAAAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (18 bp):
CAAATGTACATTTGAAGC
Found at i:14919577 original size:38 final size:38
Alignment explanation
Indices: 14919526--14919603 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
14919516 GTTTATGTGA
*
14919526 CTCAAAAAGCTATTAAAGAAAGTGTAATAACTGAATTC
1 CTCAAAAAGCTATTAAAGAAAGTGCAATAACTGAATTC
*
14919564 CTCAAAAGGCTATTAAAGAAAGTGCAATAACTGAATTC
1 CTCAAAAAGCTATTAAAGAAAGTGCAATAACTGAATTC
14919602 CT
1 CT
14919604 TGCTAATCGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26
Consensus pattern (38 bp):
CTCAAAAAGCTATTAAAGAAAGTGCAATAACTGAATTC
Found at i:14922254 original size:50 final size:49
Alignment explanation
Indices: 14922202--14922630 Score: 381
Period size: 49 Copynumber: 8.8 Consensus size: 49
14922192 GAAAGATTAT
* *
14922202 TTTTAAAGTTGTTGAGCTTCTACTGAGAGGAGTTTTTTCAAGATGAGAA
1 TTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCTTTTTCAAGATGAGAA
* * *
14922251 TTTTTAAAGTTGTTGAG-TCTCTGTTAAGAGGAGC-TTTTCTAAGATAAGAA
1 -TTTTAAAGTTGTTGAGCT-TCTGCTGAGAGGAGCTTTTTC-AAGATGAGAA
* * * *
14922301 TTTTTAAAATTGTTGAGCCTCTGCTGAGATGAGCTTTTTCAAGAAGAGAA
1 -TTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCTTTTTCAAGATGAGAA
* * * ** *
14922351 TTTTAAAGTTGTTGAGCCTT-TACTGAAATGAGCTTTTTCAAGAAAAAAA
1 TTTTAAAGTTGTTGAG-CTTCTGCTGAGAGGAGCTTTTTCAAGATGAGAA
* * * * * ** *
14922400 TTTTAAAGTTATTGAGCCTCTGCTGATAAGAGCTTTTGCAAGAAAATAA
1 TTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCTTTTTCAAGATGAGAA
* * * *
14922449 TTTTAAAGTTGTTGAGCCTCTACTAAGAGGAGCTTTTTCAATATGAGAA
1 TTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCTTTTTCAAGATGAGAA
* * *
14922498 TTTTAAAGTTGTTAAG-TCTCTGCTTAGAGGAACCTTTTTCAAGATGAGAA
1 TTTTAAAGTTGTTGAGCT-TCTGCTGAGAGG-AGCTTTTTCAAGATGAGAA
* * * * **
14922548 TTTTAAAGTTGTTGAGCCTCTACTAAGAGGAGCTTTTTTAA-A--A-TT
1 TTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCTTTTTCAAGATGAGAA
* *
14922593 TTTTAAAGTTGTTGAGCCTT-TGCTGAGATGAGTTTTTT
1 TTTTAAAGTTGTTGAG-CTTCTGCTGAGAGGAGCTTTTT
14922631 TTAGATAATT
Statistics
Matches: 315, Mismatches: 54, Indels: 25
0.80 0.14 0.06
Matches are distributed among these distances:
45 30 0.10
46 3 0.01
48 3 0.01
49 158 0.50
50 116 0.37
51 5 0.02
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (49 bp):
TTTTAAAGTTGTTGAGCTTCTGCTGAGAGGAGCTTTTTCAAGATGAGAA
Found at i:14922382 original size:49 final size:49
Alignment explanation
Indices: 14922202--14922585 Score: 384
Period size: 49 Copynumber: 7.8 Consensus size: 49
14922192 GAAAGATTAT
* * * *
14922202 TTTTAAAGTTGTTGAGCTTCTACTGAGAGGAGTTTTTTCAAGATGAGAA
1 TTTTAAAGTTGTTGAGCCTCTACTGAAAGGAGCTTTTTCAAGAAGAGAA
* * *
14922251 TTTTTAAAGTTGTTGAGTCTCT-GTTAAGAGGAGC-TTTTCTAAGATA-AGAA
1 -TTTTAAAGTTGTTGAGCCTCTACTGAA-AGGAGCTTTTTC-AAGA-AGAGAA
* * * *
14922301 TTTTTAAAATTGTTGAGCCTCTGCTGAGATGAGCTTTTTCAAGAAGAGAA
1 -TTTTAAAGTTGTTGAGCCTCTACTGAAAGGAGCTTTTTCAAGAAGAGAA
* * * *
14922351 TTTTAAAGTTGTTGAGCCTTTACTGAAATGAGCTTTTTCAAGAAAAAAA
1 TTTTAAAGTTGTTGAGCCTCTACTGAAAGGAGCTTTTTCAAGAAGAGAA
* * * * *
14922400 TTTTAAAGTTATTGAGCCTCTGCTGATAA-GAGCTTTTGCAAGAAAATAA
1 TTTTAAAGTTGTTGAGCCTCTACTGA-AAGGAGCTTTTTCAAGAAGAGAA
* *
14922449 TTTTAAAGTTGTTGAGCCTCTACT-AAGAGGAGCTTTTTCAATATGAGAA
1 TTTTAAAGTTGTTGAGCCTCTACTGAA-AGGAGCTTTTTCAAGAAGAGAA
* * * * * * *
14922498 TTTTAAAGTTGTTAAGTCTCTGCTTAGAGGAACCTTTTTCAAGATGAGAA
1 TTTTAAAGTTGTTGAGCCTCTACTGAAAGG-AGCTTTTTCAAGAAGAGAA
14922548 TTTTAAAGTTGTTGAGCCTCTACT-AAGAGGAGCTTTTT
1 TTTTAAAGTTGTTGAGCCTCTACTGAA-AGGAGCTTTTT
14922586 TAAAATTTTT
Statistics
Matches: 280, Mismatches: 42, Indels: 25
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.00
48 2 0.01
49 161 0.57
50 109 0.39
51 7 0.03
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.38
Consensus pattern (49 bp):
TTTTAAAGTTGTTGAGCCTCTACTGAAAGGAGCTTTTTCAAGAAGAGAA
Found at i:14922436 original size:98 final size:98
Alignment explanation
Indices: 14922202--14922630 Score: 465
Period size: 98 Copynumber: 4.4 Consensus size: 98
14922192 GAAAGATTAT
* * * *
14922202 TTTTAAAGTTGTTGAGCTTCTACTGAGAGGAGTTTTTTCAAGATGAGAATTTTTAAAGTTGTTGA
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAAGAGAA-TTTTAAAGTTGTTGA
* ** * *
14922267 GTCTCTGTTAAGAGGAGC-TTTTCTAAGATAAGAAT
65 GCCTCTACTAAGAGGAGCTTTTTC-AAGA-AAAAAA
* *
14922302 TTTTAAAATTGTTGAGCCTCTGCTGAGATGAGCTTTTTCAAGAAGAGAATTTTAAAGTTGTTGAG
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAAGAGAATTTTAAAGTTGTTGAG
* *
14922367 CCTTTACTGAA-ATGAGCTTTTTCAAGAAAAAAA
66 CCTCTACT-AAGAGGAGCTTTTTCAAGAAAAAAA
* * * * * *
14922400 TTTTAAAGTTATTGAGCCTCTGCTGATAAGAGCTTTTGCAAGAAAATAATTTTAAAGTTGTTGAG
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAAGAGAATTTTAAAGTTGTTGAG
* ** *
14922465 CCTCTACTAAGAGGAGCTTTTTCAATATGAGAA
66 CCTCTACTAAGAGGAGCTTTTTCAAGAAAAAAA
* * * * *
14922498 TTTTAAAGTTGTTAAGTCTCTGCTTAGAGGAACCTTTTTCAAGATGAGAATTTTAAAGTTGTTGA
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGG-AGCTTTTTCAAGAAGAGAATTTTAAAGTTGTTGA
* **
14922563 GCCTCTACTAAGAGGAGCTTTTT----TAAAATT
65 GCCTCTACTAAGAGGAGCTTTTTCAAGAAAAAAA
* * *
14922593 TTTTAAAGTTGTTGAGCCTTTGCTGAGATGAGTTTTTT
1 TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTT
14922631 TTAGATAATT
Statistics
Matches: 275, Mismatches: 50, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
94 6 0.02
95 26 0.09
97 2 0.01
98 110 0.40
99 81 0.29
100 50 0.18
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (98 bp):
TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAAGAGAATTTTAAAGTTGTTGAG
CCTCTACTAAGAGGAGCTTTTTCAAGAAAAAAA
Found at i:14922885 original size:10 final size:9
Alignment explanation
Indices: 14922869--14922903 Score: 52
Period size: 10 Copynumber: 3.7 Consensus size: 9
14922859 TTATTATTGT
14922869 TTTTTTTTC
1 TTTTTTTTC
14922878 TCTTTTTTTC
1 T-TTTTTTTC
14922888 TTCTTTTTTC
1 TT-TTTTTTC
14922898 TTTTTT
1 TTTTTT
14922904 GTCACTTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 6 0.25
10 18 0.75
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:14922911 original size:18 final size:20
Alignment explanation
Indices: 14922871--14922914 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
14922861 ATTATTGTTT
* *
14922871 TTTTTTCTCTTTTTTTCTTC
1 TTTTTTCTCTTTTTGTCTAC
14922891 TTTTTTCT-TTTTTGTC-AC
1 TTTTTTCTCTTTTTGTCTAC
14922909 TTTTTT
1 TTTTTT
14922915 TCCCTCTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 7 0.32
19 7 0.32
20 8 0.36
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (20 bp):
TTTTTTCTCTTTTTGTCTAC
Found at i:14922927 original size:29 final size:29
Alignment explanation
Indices: 14922869--14922928 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
14922859 TTATTATTGT
* * * *
14922869 TTTTTTTTCTCTTTTTTTCTTCTTTTTTC
1 TTTTTTGTCACTTTTTTTCCTCTTTCTTC
14922898 TTTTTTGTCACTTTTTTTCC-CTCTTCTTC
1 TTTTTTGTCACTTTTTTTCCTCT-TTCTTC
14922927 TT
1 TT
14922929 CTTCCGTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 2 0.08
29 24 0.92
ACGTcount: A:0.02, C:0.22, G:0.02, T:0.75
Consensus pattern (29 bp):
TTTTTTGTCACTTTTTTTCCTCTTTCTTC
Found at i:14923228 original size:18 final size:19
Alignment explanation
Indices: 14923178--14923229 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
14923168 AAAAAAATAA
* *
14923178 AAAAAAAAGTTCTCCAGAAT
1 AAAAAAATGTT-TTCAGAAT
14923198 AAAAAAATGTTTTCAGAAT
1 AAAAAAATGTTTTCAGAAT
*
14923217 CAAAAAAT-TTTTC
1 AAAAAAATGTTTTC
14923230 TTTCTGTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 5 0.17
19 14 0.48
20 10 0.34
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.29
Consensus pattern (19 bp):
AAAAAAATGTTTTCAGAAT
Found at i:14925930 original size:24 final size:25
Alignment explanation
Indices: 14925892--14925964 Score: 78
Period size: 24 Copynumber: 2.9 Consensus size: 25
14925882 TAGCTTTTTT
**
14925892 TATTTTTATCCTATATATTTAA-ATA
1 TATTTTTATAATATATA-TTAATATA
14925917 -ATTTTTATAATATATATTAATATA
1 TATTTTTATAATATATATTAATATA
*
14925941 TATTTTTAATAAAAATATATTAAT
1 TATTTTT-AT-AATATATATTAAT
14925965 TTTAATTAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 4 0.10
24 17 0.41
25 6 0.15
26 2 0.05
27 12 0.29
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (25 bp):
TATTTTTATAATATATATTAATATA
Found at i:14926007 original size:27 final size:27
Alignment explanation
Indices: 14925934--14926007 Score: 68
Period size: 27 Copynumber: 2.9 Consensus size: 27
14925924 TAATATATAT
* *
14925934 TAATATATATT-TTTAATAAAAATATAT
1 TAATTTATATTATTTAATAAAAA-ATAA
**
14925961 TAATTT-TA--A-TTAATTTAAAATAA
1 TAATTTATATTATTTAATAAAAAATAA
14925984 TAATTTATATTATTTAATAAAAAA
1 TAATTTATATTATTTAATAAAAAA
14926008 ACCTATATGC
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
23 9 0.25
24 10 0.28
26 3 0.08
27 14 0.39
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (27 bp):
TAATTTATATTATTTAATAAAAAATAA
Found at i:14926143 original size:30 final size:28
Alignment explanation
Indices: 14926109--14926168 Score: 66
Period size: 30 Copynumber: 2.1 Consensus size: 28
14926099 TTTAAAATCA
*
14926109 TATATACATTTATTTTTATATTCATAATAT
1 TATATACATTCATTTTTATATT-A-AATAT
** *
14926139 TATATTTATTCATTTTTTTATTAAATAT
1 TATATACATTCATTTTTATATTAAATAT
14926167 TA
1 TA
14926169 ATGAAATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 7 0.27
29 1 0.04
30 18 0.69
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (28 bp):
TATATACATTCATTTTTATATTAAATAT
Found at i:14926956 original size:16 final size:15
Alignment explanation
Indices: 14926935--14926976 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
14926925 TTTTACATAT
14926935 ATTATATATTTTTATA
1 ATTATATATTTTT-TA
*
14926951 ATTATA-ATATTTTA
1 ATTATATATTTTTTA
14926965 ATTATATATTTT
1 ATTATATATTTT
14926977 ATTTGGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 8 0.35
15 9 0.39
16 6 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
ATTATATATTTTTTA
Found at i:14926966 original size:14 final size:14
Alignment explanation
Indices: 14926935--14926977 Score: 52
Period size: 13 Copynumber: 3.0 Consensus size: 14
14926925 TTTTACATAT
*
14926935 ATTATATATTTTTATA
1 ATTATA-ATATTT-TA
14926951 ATTATAATATTTTA
1 ATTATAATATTTTA
14926965 ATTAT-ATATTTTA
1 ATTATAATATTTTA
14926978 TTTGGACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 8 0.31
14 7 0.27
15 5 0.19
16 6 0.23
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
ATTATAATATTTTA
Found at i:14927067 original size:32 final size:31
Alignment explanation
Indices: 14927025--14927085 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 31
14927015 GCAGCTCAAA
14927025 ATTTAAATAAATTTAAAAATTATGTTTAAATAT
1 ATTTAAATAAATTTAAAAATT-T-TTTAAATAT
*
14927058 ATTT-AATAAATTTTAAAATTTTTTAAAT
1 ATTTAAATAAATTTAAAAATTTTTTAAAT
14927086 CCCTTTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 7 0.26
31 1 0.04
32 15 0.56
33 4 0.15
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (31 bp):
ATTTAAATAAATTTAAAAATTTTTTAAATAT
Found at i:14932439 original size:21 final size:21
Alignment explanation
Indices: 14932414--14932456 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
14932404 TAAAGCCCTA
14932414 ATATATTTTTAATAAAA-AATT
1 ATATA-TTTTAATAAAATAATT
*
14932435 ATATATTTTATTAAAATAATT
1 ATATATTTTAATAAAATAATT
14932456 A
1 A
14932457 AGATAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
ATATATTTTAATAAAATAATT
Found at i:14932924 original size:20 final size:20
Alignment explanation
Indices: 14932886--14932926 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
14932876 TTCATATTTT
*
14932886 AAATAATTATATTTGAATAA
1 AAATAATTATATATGAATAA
14932906 AAATAATTATTATAT-AATAA
1 AAATAATTA-TATATGAATAA
14932926 A
1 A
14932927 TACTCATAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (20 bp):
AAATAATTATATATGAATAA
Found at i:14940193 original size:17 final size:18
Alignment explanation
Indices: 14940173--14940211 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
14940163 TTAAAATGAC
14940173 TTTT-AAAAAT-AATATAT
1 TTTTAAAAAATAAAT-TAT
14940190 TTTTAAAAAATAAATTAT
1 TTTTAAAAAATAAATTAT
14940208 TTTT
1 TTTT
14940212 TTCTAAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 13 0.65
19 3 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTAAAAAATAAATTAT
Found at i:14943313 original size:10 final size:10
Alignment explanation
Indices: 14943283--14943316 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
14943273 TTTAGGCTCT
14943283 TCTTGTTAAA
1 TCTTGTTAAA
**
14943293 TCTTGCCAAA
1 TCTTGTTAAA
14943303 TCTTGTTAAA
1 TCTTGTTAAA
14943313 TCTT
1 TCTT
14943317 TCAGTCTTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.47
Consensus pattern (10 bp):
TCTTGTTAAA
Found at i:14943516 original size:16 final size:18
Alignment explanation
Indices: 14943497--14943535 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 18
14943487 TACAAAAGTC
14943497 TTGAGAACA-AAAAAA-A
1 TTGAGAACAGAAAAAAGA
14943513 TT--GAACAGAAAAAAGA
1 TTGAGAACAGAAAAAAGA
14943529 TTGAGAA
1 TTGAGAA
14943536 ATTAAGAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 6
0.76 0.00 0.24
Matches are distributed among these distances:
14 5 0.26
15 6 0.32
16 5 0.26
18 3 0.16
ACGTcount: A:0.62, C:0.05, G:0.18, T:0.15
Consensus pattern (18 bp):
TTGAGAACAGAAAAAAGA
Found at i:14947021 original size:22 final size:22
Alignment explanation
Indices: 14946996--14947039 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
14946986 TTAATCTATA
14946996 TATTTATATATCTAGAATTAAG
1 TATTTATATATCTAGAATTAAG
*
14947018 TATTTATATCTCTAGAATTAAG
1 TATTTATATATCTAGAATTAAG
14947040 GATAGAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.45
Consensus pattern (22 bp):
TATTTATATATCTAGAATTAAG
Found at i:14950078 original size:17 final size:17
Alignment explanation
Indices: 14950052--14950085 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14950042 AATTTAGGGG
*
14950052 AAAGTGTGATATTTGAA
1 AAAGTGTGATACTTGAA
*
14950069 AAAGTTTGATACTTGAA
1 AAAGTGTGATACTTGAA
14950086 GTTTATGTTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (17 bp):
AAAGTGTGATACTTGAA
Found at i:14950558 original size:40 final size:40
Alignment explanation
Indices: 14950507--14950654 Score: 179
Period size: 40 Copynumber: 3.7 Consensus size: 40
14950497 AAATAAGGTT
* * *
14950507 TTGTAAGAAGAAACACCTTAATTGATATCAAATAAGATGC
1 TTGTAGGAAGAAACGCCTTAATTGATATCAAATAAGACGC
* * * *
14950547 TTGTAGGAAGAAATGCCTTAATTGATGTCAATTAAGACAC
1 TTGTAGGAAGAAACGCCTTAATTGATATCAAATAAGACGC
* *
14950587 TTGTAGGAAGAAACGCCTTAATTGATATCTAATAAGGCGC
1 TTGTAGGAAGAAACGCCTTAATTGATATCAAATAAGACGC
* * * *
14950627 TTTTAGAAAGAAACGTCTTAATTAATAT
1 TTGTAGGAAGAAACGCCTTAATTGATAT
14950655 TAAAACTGAA
Statistics
Matches: 91, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.40, C:0.12, G:0.18, T:0.30
Consensus pattern (40 bp):
TTGTAGGAAGAAACGCCTTAATTGATATCAAATAAGACGC
Found at i:14951140 original size:24 final size:24
Alignment explanation
Indices: 14951113--14951160 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
14951103 GCCCATTCAT
* *
14951113 GGTTCAATAAGTTAGCATCCTAGG
1 GGTTCAACAAATTAGCATCCTAGG
14951137 GGTTCAACAAATTAGCATCCTAGG
1 GGTTCAACAAATTAGCATCCTAGG
14951161 CACTATCTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (24 bp):
GGTTCAACAAATTAGCATCCTAGG
Found at i:14954926 original size:2 final size:2
Alignment explanation
Indices: 14954919--14954944 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14954909 TCTTCTTCTT
14954919 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
14954945 ACAACAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:14962257 original size:17 final size:17
Alignment explanation
Indices: 14962235--14962272 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
14962225 ATAACAATCA
*
14962235 TATTAAAGGAAAAACAT
1 TATTAAAGAAAAAACAT
14962252 TATT-AAGAAAAAACAT
1 TATTAAAGAAAAAACAT
14962268 TATTA
1 TATTA
14962273 TGAAAGACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 15 0.79
17 4 0.21
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.29
Consensus pattern (17 bp):
TATTAAAGAAAAAACAT
Found at i:14962265 original size:16 final size:16
Alignment explanation
Indices: 14962244--14962277 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14962234 ATATTAAAGG
14962244 AAAAACATTATTAAGA
1 AAAAACATTATTAAGA
*
14962260 AAAAACATTATTATGA
1 AAAAACATTATTAAGA
14962276 AA
1 AA
14962278 GACTAATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.62, C:0.06, G:0.06, T:0.26
Consensus pattern (16 bp):
AAAAACATTATTAAGA
Found at i:14962837 original size:12 final size:12
Alignment explanation
Indices: 14962820--14962864 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
14962810 TATGTGTGTG
14962820 TATGTATATATA
1 TATGTATATATA
* *
14962832 TATGTATGTATG
1 TATGTATATATA
*
14962844 TATGTATATGTA
1 TATGTATATATA
*
14962856 TATATATAT
1 TATGTATAT
14962865 TTAAACTCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (12 bp):
TATGTATATATA
Found at i:14964223 original size:2 final size:2
Alignment explanation
Indices: 14964216--14964256 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
14964206 CAATCGAGTT
14964216 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14964257 AACATTAACC
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:14966105 original size:59 final size:60
Alignment explanation
Indices: 14965997--14966161 Score: 185
Period size: 60 Copynumber: 2.7 Consensus size: 60
14965987 AAAAGAGAGA
* * * * *
14965997 TTTAAGGAAAAGTTGAAGT-ATAAAGTTTCTTTAAAAATAAAAATTTTAAAAA-ATATTTT
1 TTTAAGGAAAAGTTGAAATGATAAA-TTTTTTTAAAAATAAAAATATTAAAAAGAGATATT
*
14966056 TTTAAGGAAAAATTGAAATGATCAAATTTTTTTAAAAATAAAAA-ATTAAAAAGAGATATT
1 TTTAAGGAAAAGTTGAAATGAT-AAATTTTTTTAAAAATAAAAATATTAAAAAGAGATATT
* *
14966116 TTTAAGGAGAAGTTGAAA-GCATTAATTTTTCTTAGAAAATAAAAAT
1 TTTAAGGAAAAGTTGAAATG-ATAAATTTTT-TTA-AAAATAAAAAT
14966162 TTTTCAAAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
59 32 0.36
60 45 0.50
61 13 0.14
ACGTcount: A:0.50, C:0.02, G:0.12, T:0.36
Consensus pattern (60 bp):
TTTAAGGAAAAGTTGAAATGATAAATTTTTTTAAAAATAAAAATATTAAAAAGAGATATT
Found at i:14966162 original size:60 final size:57
Alignment explanation
Indices: 14965880--14966162 Score: 171
Period size: 60 Copynumber: 4.8 Consensus size: 57
14965870 AAAATCTATT
* * ** * * *
14965880 TTTTTGAGGAAAAGTTGAAAGAATCAATTTTTCTTAAAAAATAAAAATTTCAATA-TTT
1 TTTTTAAGGAAAAGTTGAAAG-ATTAATTTTTCTT-AAAAATAAAAATTAAAAAAGATA
* * * * ** * * ** *
14965938 TTTTTGAGGAAAAGTTGAATGTATTGATTTTCCTT-GGAATGAATATTTCAAAAGAGA
1 TTTTTAAGGAAAAGTTGAAAG-ATTAATTTTTCTTAAAAATAAAAATTAAAAAAGATA
** ** * *
14965995 GATTTAAGGAAAAGTTG-AAG-TATAAAGTTTCTTTAAAAATAAAAATTTTAAAAAATATT
1 TTTTTAAGGAAAAGTTGAAAGAT-TAATTTTTC-TTAAAAATAAAAA--TTAAAAAAGATA
* *
14966054 TTTTTAAGGAAAAATTGAAATGATCAAATTTTT-TTAAAAATAAAAAATTAAAAAGAGATA
1 TTTTTAAGGAAAAGTTGAAA-GAT-TAATTTTTCTTAAAAAT-AAAAATTAAAAA-AGATA
*
14966114 TTTTTAAGGAGAAGTTGAAAGCATTAATTTTTCTTAGAAAATAAAAATT
1 TTTTTAAGGAAAAGTTGAAAG-ATTAATTTTTCTTA-AAAATAAAAATT
14966163 TTTCAAAAAA
Statistics
Matches: 169, Mismatches: 42, Indels: 26
0.71 0.18 0.11
Matches are distributed among these distances:
54 1 0.01
55 5 0.03
56 17 0.10
57 20 0.12
58 30 0.18
59 36 0.21
60 43 0.25
61 11 0.07
62 6 0.04
ACGTcount: A:0.46, C:0.04, G:0.13, T:0.37
Consensus pattern (57 bp):
TTTTTAAGGAAAAGTTGAAAGATTAATTTTTCTTAAAAATAAAAATTAAAAAAGATA
Found at i:14966245 original size:49 final size:48
Alignment explanation
Indices: 14966192--14966285 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 48
14966182 AAAGAAATGT
*
14966192 TTTTAAGGAAAAGTTGAAAGTATCAATTTTTCTTAAATAAAAAAAAAGA
1 TTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAA-AAAAAAAAAGA
*
14966241 TTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAATAAAA
1 TTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAAAAAAA
14966286 TTTTTCAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
48 7 0.16
49 36 0.84
ACGTcount: A:0.50, C:0.05, G:0.12, T:0.33
Consensus pattern (48 bp):
TTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAAAAAAAAGA
Found at i:14966288 original size:68 final size:68
Alignment explanation
Indices: 14966216--14966448 Score: 172
Period size: 75 Copynumber: 3.3 Consensus size: 68
14966206 TGAAAGTATC
*
14966216 AATTTTTCTTAAATAAAAAAAAAGATTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAA
1 AATTTTTCTTAAATAAAAAAAAAGATTTTAAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAA
14966281 TAA
66 TAA
** *
14966284 AATTTTTCAAAAATATATTTCAAAAGAAACATTTTTAAGAAAAAGTTGAAAGTATCAAATTTT--
1 AATTTTTCTTAAATA-A----AAAA-AAAGA-TTTTAAGAAAAAGTTGAAAGTATC-AATTTTCC
*
14966347 TT--TAAATAA
58 TTAAAAAATAA
* * * * * *
14966356 AAATATTCTCAATTAAAAAAAAAAGCA-TTTACGTAAAAAGTTAAAAGTATCAATTTTTCCTTAA
1 AATTTTTCTTAAAT-AAAAAAAAAG-ATTTTAAG-AAAAAGTTGAAAGTATCAA-TTTTCCTT-A
*
14966420 ATAAAAGCATA
61 A-AAAA-TA-A
14966431 AATTTTT-TTAAATAAAAA
1 AATTTTTCTTAAATAAAAA
14966449 TAAGAAAAGA
Statistics
Matches: 126, Mismatches: 19, Indels: 35
0.70 0.11 0.19
Matches are distributed among these distances:
66 7 0.06
67 23 0.18
68 18 0.14
69 3 0.02
72 16 0.13
73 13 0.10
74 11 0.09
75 29 0.23
76 6 0.05
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.35
Consensus pattern (68 bp):
AATTTTTCTTAAATAAAAAAAAAGATTTTAAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAA
TAA
Found at i:14966329 original size:124 final size:126
Alignment explanation
Indices: 14966115--14966358 Score: 377
Period size: 124 Copynumber: 2.0 Consensus size: 126
14966105 AAAGAGATAT
* * * * *
14966115 TTTTAAGGAGAAGTTGAAAGCATTAATTTTTCTTAGAAAATAAAAATTTTTCAAAAAATGTATTT
1 TTTTAAGGAAAAGTTGAAAGCATCAATTTTCCTTAAAAAATAAAAATTTTTCAAAAAATATATTT
** *
14966180 CAAAAGAAATGTTTTTAAGGAAAAGTTGAAAGTATC-AATTTTTCTTAAATAAAAAAAAAGA
66 CAAAAGAAACATTTTTAAGAAAAAGTTGAAAGTATCAAATTTTT-TTAAATAAAAAAAAAGA
*
14966241 TTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAAT-AAAATTTTTC-AAAAATATATTT
1 TTTTAAGGAAAAGTTGAAAGCATCAATTTTCCTTAAAAAATAAAAATTTTTCAAAAAATATATTT
14966304 CAAAAGAAACATTTTTAAGAAAAAGTTGAAAGTATCAAATTTTTTTAAATAAAAA
66 CAAAAGAAACATTTTTAAGAAAAAGTTGAAAGTATCAAATTTTTTTAAATAAAAA
14966359 TATTCTCAAT
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
124 55 0.51
125 17 0.16
126 36 0.33
ACGTcount: A:0.49, C:0.05, G:0.11, T:0.35
Consensus pattern (126 bp):
TTTTAAGGAAAAGTTGAAAGCATCAATTTTCCTTAAAAAATAAAAATTTTTCAAAAAATATATTT
CAAAAGAAACATTTTTAAGAAAAAGTTGAAAGTATCAAATTTTTTTAAATAAAAAAAAAGA
Found at i:14966444 original size:22 final size:23
Alignment explanation
Indices: 14966397--14966447 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 23
14966387 CGTAAAAAGT
* *
14966397 TAAAAGTATCAATTTTTCCTTAAA
1 TAAAAGCATAAATTTTT-CTTAAA
14966421 TAAAAGCATAAATTTTT-TTAAA
1 TAAAAGCATAAATTTTTCTTAAA
14966443 TAAAA
1 TAAAA
14966448 ATAAGAAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.40
24 15 0.60
ACGTcount: A:0.49, C:0.08, G:0.04, T:0.39
Consensus pattern (23 bp):
TAAAAGCATAAATTTTTCTTAAA
Found at i:14976996 original size:19 final size:19
Alignment explanation
Indices: 14976972--14977012 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
14976962 GAAAACTCGC
* *
14976972 AAAAGGCGATTTAAGTTGA
1 AAAAGGAGATCTAAGTTGA
*
14976991 AAAAGGATATCTAAGTTGA
1 AAAAGGAGATCTAAGTTGA
14977010 AAA
1 AAA
14977013 TCTAAAAAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.05, G:0.22, T:0.24
Consensus pattern (19 bp):
AAAAGGAGATCTAAGTTGA
Found at i:14977881 original size:86 final size:86
Alignment explanation
Indices: 14977779--14978217 Score: 384
Period size: 86 Copynumber: 5.1 Consensus size: 86
14977769 CAGTCTTCGA
* * * * * * *
14977779 TTCAATCCAGGTCATTTTGTTTTTGGATTATGACCTATTCTAGATCCTTCTTTGGTTTGGTTCAA
1 TTCAATCCAGGTCATTTTGTTTTTGGATTTTGACCTATGCCAGATCCTTCTTCGGCTTAGTCCAA
*
14977844 GTTATTCATTTTAGACTTGGG
66 GTTATTCATTTTAGACTTGAG
* * * * *
14977865 TTCAATCCAAGTCATTTTGTTTTCGGATTTTGGCCTATGCCAAATCTTTCTTCGGCTTAGTCCAA
1 TTCAATCCAGGTCATTTTGTTTTTGGATTTTGACCTATGCCAGATCCTTCTTCGGCTTAGTCCAA
14977930 GTTATTCATTTTAGACTTCG-G
66 GTTATTCATTTTAGACTT-GAG
* * * ** *
14977951 CTTC-GTCCAGATCATTTTGTTTTTAGATTTTGACCTATGCCAGATTGTTCTTCGGCTTAGTTCA
1 -TTCAATCCAGGTCATTTTGTTTTTGGATTTTGACCTATGCCAGATCCTTCTTCGGCTTAGTCCA
*
14978015 AGTTATTTATTTTAGACATT-AG
65 AGTTATTCATTTTAGAC-TTGAG
* * * * * * *** * *
14978037 TTCGATCTAGGTCATTTTGTTTTCGAATTTTGGCTTATGTTTGATTCTTCTTCGGTTTAGTCCAA
1 TTCAATCCAGGTCATTTTGTTTTTGGATTTTGACCTATGCCAGATCCTTCTTCGGCTTAGTCCAA
* *
14978102 GTTGTTCATTTTAGACTTTAG
66 GTTATTCATTTTAGACTTGAG
* * * ** * * * * * *
14978123 TTCTATCTAGGTCATTATGTTTTTGGATTTCCACTTACGACA-ATTCCTTTTTTGACTTAGTCCA
1 TTCAATCCAGGTCATTTTGTTTTTGGATTTTGACCTATGCCAGA-TCCTTCTTCGGCTTAGTCCA
* *
14978187 AGTTGTTCATTTTAGACTCTTA-
65 AGTTATTCATTTTAGACT-TGAG
14978209 TTCAATCCA
1 TTCAATCCA
14978218 AGTTATCTTA
Statistics
Matches: 288, Mismatches: 57, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
85 6 0.02
86 273 0.95
87 9 0.03
ACGTcount: A:0.20, C:0.17, G:0.16, T:0.47
Consensus pattern (86 bp):
TTCAATCCAGGTCATTTTGTTTTTGGATTTTGACCTATGCCAGATCCTTCTTCGGCTTAGTCCAA
GTTATTCATTTTAGACTTGAG
Found at i:14978146 original size:172 final size:172
Alignment explanation
Indices: 14977783--14978220 Score: 445
Period size: 172 Copynumber: 2.5 Consensus size: 172
14977773 CTTCGATTCA
* * * * * *
14977783 ATCCAGGTCATTTTGTTTTTGGATTATGACCTATTCTAGATCCTTCTTTGGTTTGGTTCAAGTTA
1 ATCCAGGTCATTTTGTTTTTGGATTTTGACCTATGCCAGATCCTTCTTCGGCTTAGTTCAAGTTA
* *
14977848 TTCATTTTAGACTTGGGTTCAATCCAAGTCATTTTGTTTTCGGATTTTGGCCTATGCCAAATCTT
66 TTCATTTTAGACTTGAGTTCAATCCAAGTCATTTTGTTTTCGAATTTTGGCCTATGCCAAATCTT
*
14977913 TCTTCGGCTTAGTCCAAGTTATTCATTTTAGACTTCGGCTTC
131 TCTTCGGCTTAGTCCAAGTTATTCATTTTAGACTTCAGCTTC
* * * **
14977955 GTCCAGATCATTTTGTTTTTAGATTTTGACCTATGCCAGATTGTTCTTCGGCTTAGTTCAAGTTA
1 ATCCAGGTCATTTTGTTTTTGGATTTTGACCTATGCCAGATCCTTCTTCGGCTTAGTTCAAGTTA
* * * * * ****
14978020 TTTATTTTAGACATT-AGTTCGATCTAGGTCATTTTGTTTTCGAATTTTGGCTTATGTTTGAT-T
66 TTCATTTTAGAC-TTGAGTTCAATCCAAGTCATTTTGTTTTCGAATTTTGGCCTATGCCAAATCT
* * *
14978083 CTTCTTCGGTTTAGTCCAAGTTGTTCATTTTAGACTTTAG-TTC
130 -TTCTTCGGCTTAGTCCAAGTTATTCATTTTAGACTTCAGCTTC
* * ** * * * * * * *
14978126 TATCTAGGTCATTATGTTTTTGGATTTCCACTTACGACA-ATTCCTTTTTTGACTTAGTCCAAGT
1 -ATCCAGGTCATTTTGTTTTTGGATTTTGACCTATGCCAGA-TCCTTCTTCGGCTTAGTTCAAGT
* *
14978190 TGTTCATTTTAGACTCTTA-TTCAATCCAAGT
64 TATTCATTTTAGACT-TGAGTTCAATCCAAGT
14978221 TATCTTATCT
Statistics
Matches: 213, Mismatches: 47, Indels: 12
0.78 0.17 0.04
Matches are distributed among these distances:
171 6 0.03
172 204 0.96
173 3 0.01
ACGTcount: A:0.20, C:0.17, G:0.16, T:0.47
Consensus pattern (172 bp):
ATCCAGGTCATTTTGTTTTTGGATTTTGACCTATGCCAGATCCTTCTTCGGCTTAGTTCAAGTTA
TTCATTTTAGACTTGAGTTCAATCCAAGTCATTTTGTTTTCGAATTTTGGCCTATGCCAAATCTT
TCTTCGGCTTAGTCCAAGTTATTCATTTTAGACTTCAGCTTC
Done.