Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167993.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_25, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 17943224
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 94000 characters in sequence are not A, C, G, or T
File 9 of 100
Found at i:1551840 original size:20 final size:19
Alignment explanation
Indices: 1551810--1551852 Score: 77
Period size: 20 Copynumber: 2.2 Consensus size: 19
1551800 ACTACCACTC
1551810 ATAAAGTATGATTTTGTTT
1 ATAAAGTATGATTTTGTTT
1551829 ATAAATGTATGATTTTGTTT
1 ATAAA-GTATGATTTTGTTT
1551849 ATAA
1 ATAA
1551853 GTTTAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (19 bp):
ATAAAGTATGATTTTGTTT
Found at i:1553457 original size:35 final size:35
Alignment explanation
Indices: 1553411--1553481 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
1553401 CATATATAAA
*
1553411 TCAAATGTTTTCTAGGCATAAATATACAACTAACT
1 TCAAATGTTTTCTAGGCATAAACATACAACTAACT
* *
1553446 TCAAATGTTTTCTGGGCATAAACCTACAACTAACT
1 TCAAATGTTTTCTAGGCATAAACATACAACTAACT
1553481 T
1 T
1553482 GACATATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.34
Consensus pattern (35 bp):
TCAAATGTTTTCTAGGCATAAACATACAACTAACT
Found at i:1553747 original size:31 final size:31
Alignment explanation
Indices: 1553704--1553773 Score: 115
Period size: 31 Copynumber: 2.3 Consensus size: 31
1553694 GAATTATTTA
*
1553704 AAGT-ATTCTTGACAAAAACCACTGTTATTG
1 AAGTCATTTTTGACAAAAACCACTGTTATTG
1553734 AAGTCATTTTTGACAAAAACCACTGTTATTG
1 AAGTCATTTTTGACAAAAACCACTGTTATTG
*
1553765 AAGGCATTT
1 AAGTCATTT
1553774 CAAGTTCTGG
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
30 4 0.11
31 33 0.89
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (31 bp):
AAGTCATTTTTGACAAAAACCACTGTTATTG
Found at i:1554236 original size:8 final size:8
Alignment explanation
Indices: 1554214--1554247 Score: 59
Period size: 8 Copynumber: 4.1 Consensus size: 8
1554204 AATTAAATTA
1554214 TATATTTT
1 TATATTTT
1554222 TATTATTTT
1 TA-TATTTT
1554231 TATATTTT
1 TATATTTT
1554239 TATATTTT
1 TATATTTT
1554247 T
1 T
1554248 TAAAATTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 17 0.68
9 8 0.32
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATATTTT
Found at i:1554248 original size:9 final size:9
Alignment explanation
Indices: 1554211--1554260 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
1554201 TTGAATTAAA
1554211 TTATATATTT
1 TTATAT-TTT
1554221 TTAT-TATTT
1 TTATAT-TTT
1554230 TTATA-TTT
1 TTATATTTT
1554238 TTATATTTT
1 TTATATTTT
* *
1554247 TTAAAATTT
1 TTATATTTT
1554256 TTATA
1 TTATA
1554261 AAATAAAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
8 8 0.23
9 23 0.66
10 4 0.11
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (9 bp):
TTATATTTT
Found at i:1554248 original size:17 final size:18
Alignment explanation
Indices: 1554214--1554260 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
1554204 AATTAAATTA
1554214 TATATTTTTAT-TATTTT
1 TATATTTTTATATATTTT
1554231 TATATTTTTATAT-TTTT
1 TATATTTTTATATATTTT
*
1554248 TAAAATTTTTATA
1 T-ATATTTTTATA
1554261 AAATAAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 16 0.59
18 11 0.41
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
TATATTTTTATATATTTT
Found at i:1554451 original size:25 final size:25
Alignment explanation
Indices: 1554423--1554475 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
1554413 TAATTTTTAA
*
1554423 AAATTTATAATATTATATATTATCT
1 AAATTCATAATATTATATATTATCT
*
1554448 AAATTCATAATATTATATATTATTT
1 AAATTCATAATATTATATATTATCT
1554473 AAA
1 AAA
1554476 AAAATCGAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (25 bp):
AAATTCATAATATTATATATTATCT
Found at i:1557341 original size:23 final size:23
Alignment explanation
Indices: 1557314--1557359 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
1557304 TTTTTGAGAC
1557314 CATTTATACAAAAACCAACTAAG
1 CATTTATACAAAAACCAACTAAG
**
1557337 CATTTATACAAAAATTAACTAAG
1 CATTTATACAAAAACCAACTAAG
1557360 TTATACAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.52, C:0.17, G:0.04, T:0.26
Consensus pattern (23 bp):
CATTTATACAAAAACCAACTAAG
Found at i:1557365 original size:20 final size:21
Alignment explanation
Indices: 1557317--1557367 Score: 59
Period size: 23 Copynumber: 2.4 Consensus size: 21
1557307 TTGAGACCAT
1557317 TTATACAAAAACCAACTAAGCA
1 TTATACAAAAACCAACTAAG-A
**
1557339 TTTATACAAAAATTAACTAAG-
1 -TTATACAAAAACCAACTAAGA
1557360 TTATACAA
1 TTATACAA
1557368 TGGTTAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 8 0.31
23 18 0.69
ACGTcount: A:0.53, C:0.16, G:0.04, T:0.27
Consensus pattern (21 bp):
TTATACAAAAACCAACTAAGA
Found at i:1558990 original size:18 final size:17
Alignment explanation
Indices: 1558958--1559002 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
1558948 ACGAATTGAA
* *
1558958 TTAAATTATATATTTTT
1 TTAAATTTTAGATTTTT
*
1558975 ATTAATTTTTAGATTTTT
1 -TTAAATTTTAGATTTTT
1558993 TTAAATTTTA
1 TTAAATTTTA
1559003 TAAAATAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TTAAATTTTAGATTTTT
Found at i:1559074 original size:23 final size:22
Alignment explanation
Indices: 1559022--1559076 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
1559012 ATAATTATTT
* *
1559022 TATATAT-AAAT-CTATTTAAA
1 TATATATAAAATATTATTAAAA
*
1559042 TATATTTAAAATATTATTAAAA
1 TATATATAAAATATTATTAAAA
1559064 TAATATATAAAAT
1 T-ATATATAAAAT
1559077 TTAAAAAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 6 0.21
21 4 0.14
22 8 0.29
23 10 0.36
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
TATATATAAAATATTATTAAAA
Found at i:1559163 original size:12 final size:12
Alignment explanation
Indices: 1559146--1559171 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1559136 AAAGAAAGTC
1559146 AATTAAATTTTA
1 AATTAAATTTTA
1559158 AATTAAATTTTA
1 AATTAAATTTTA
1559170 AA
1 AA
1559172 AATTTATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
AATTAAATTTTA
Found at i:1560260 original size:8 final size:8
Alignment explanation
Indices: 1560249--1560293 Score: 67
Period size: 8 Copynumber: 5.9 Consensus size: 8
1560239 TTATTTTAAT
1560249 TTTATATA
1 TTTATATA
1560257 TTTATATA
1 TTTATATA
1560265 TTTATATA
1 TTTATATA
*
1560273 TTTTTA-A
1 TTTATATA
1560280 TTT-TATA
1 TTTATATA
1560287 TTTATAT
1 TTTATAT
1560294 TAAAAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
6 2 0.06
7 8 0.24
8 24 0.71
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTATATA
Found at i:1560307 original size:18 final size:18
Alignment explanation
Indices: 1560284--1560334 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 18
1560274 TTTTAATTTT
1560284 ATATTTATATTAAAAATA
1 ATATTTATATTAAAAATA
1560302 ATATTTTATATTTAAAAAATA
1 ATA-TTTATA-TT-AAAAATA
1560323 ATATTT-TATTAA
1 ATATTTATATTAA
1560335 TTTCAGATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 2 0.07
18 5 0.17
19 8 0.27
20 5 0.17
21 10 0.33
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATTTATATTAAAAATA
Found at i:1560313 original size:25 final size:21
Alignment explanation
Indices: 1560287--1560331 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
1560277 TAATTTTATA
1560287 TTTATA-TT-AAAAATAATAT
1 TTTATATTTAAAAAATAATAT
1560306 TTTATATTTAAAAAATAATAT
1 TTTATATTTAAAAAATAATAT
1560327 TTTAT
1 TTTAT
1560332 TAATTTCAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 16 0.67
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TTTATATTTAAAAAATAATAT
Found at i:1562661 original size:27 final size:28
Alignment explanation
Indices: 1562623--1562682 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
1562613 ATTATTTTTT
* *
1562623 TATATAATTTTTATTTTTAA-TTTTACA
1 TATATAAATTTTATTTTAAAGTTTTACA
*
1562650 TATATAAATTTTATTTTAAAGTTTTATA
1 TATATAAATTTTATTTTAAAGTTTTACA
1562678 TATAT
1 TATAT
1562683 GTAAATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 18 0.62
28 11 0.38
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (28 bp):
TATATAAATTTTATTTTAAAGTTTTACA
Found at i:1563028 original size:15 final size:15
Alignment explanation
Indices: 1563005--1563034 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1562995 TCATGACTAA
*
1563005 ATCATTATTAATTTG
1 ATCACTATTAATTTG
1563020 ATCACTATTAATTTG
1 ATCACTATTAATTTG
1563035 CCCTCTTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.10, G:0.07, T:0.50
Consensus pattern (15 bp):
ATCACTATTAATTTG
Found at i:1563503 original size:12 final size:12
Alignment explanation
Indices: 1563485--1563517 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
1563475 CTATCTGTTA
1563485 ATTTTATCATTTT
1 ATTTTATC-TTTT
1563498 -TTTTATCTTTT
1 ATTTTATCTTTT
1563509 ATTTTATCT
1 ATTTTATCT
1563518 AATTAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.73
Consensus pattern (12 bp):
ATTTTATCTTTT
Found at i:1564148 original size:34 final size:31
Alignment explanation
Indices: 1564105--1564167 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 31
1564095 TCAGAATCAG
*
1564105 AGAAACAGAAAGCAAAATCAAAGAAAAAAAAAAC
1 AGAAACAG-AAG--AAATAAAAGAAAAAAAAAAC
1564139 AGAAACAGAAGAAATAAAAGAAAAAAAAA
1 AGAAACAGAAGAAATAAAAGAAAAAAAAA
1564168 GCATAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
31 17 0.61
33 3 0.11
34 8 0.29
ACGTcount: A:0.76, C:0.08, G:0.13, T:0.03
Consensus pattern (31 bp):
AGAAACAGAAGAAATAAAAGAAAAAAAAAAC
Found at i:1566412 original size:2 final size:2
Alignment explanation
Indices: 1566405--1566429 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
1566395 CAAGAGGAGG
1566405 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
1566430 ATATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:1568402 original size:22 final size:23
Alignment explanation
Indices: 1568377--1568420 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
1568367 CATGTATTTG
1568377 GTTTATGC-TGTGT-CTAATCTTT
1 GTTTATGCTTGT-TACTAATCTTT
*
1568399 GTTTTTGCTTGTTACTAATCTT
1 GTTTATGCTTGTTACTAATCTT
1568421 AGGTTGGTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.14, C:0.14, G:0.16, T:0.57
Consensus pattern (23 bp):
GTTTATGCTTGTTACTAATCTTT
Found at i:1575654 original size:3 final size:3
Alignment explanation
Indices: 1575646--1575675 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
1575636 CTTGTAATAC
*
1575646 CAA CAA CAA CAA CAA CAA CAA AAA CAA CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
1575676 GCTCGACCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.70, C:0.30, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Found at i:1578009 original size:12 final size:12
Alignment explanation
Indices: 1577992--1578016 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1577982 TTTGTTGGAC
1577992 TAATGTAATAAT
1 TAATGTAATAAT
1578004 TAATGTAATAAT
1 TAATGTAATAAT
1578016 T
1 T
1578017 TCTAGTTCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (12 bp):
TAATGTAATAAT
Found at i:1582708 original size:14 final size:14
Alignment explanation
Indices: 1582689--1582720 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
1582679 CTGCCAAAAC
1582689 CAAGGAAGAAATTT
1 CAAGGAAGAAATTT
1582703 CAAGGAAGAAATTT
1 CAAGGAAGAAATTT
1582717 CAAG
1 CAAG
1582721 AAGTGAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.50, C:0.09, G:0.22, T:0.19
Consensus pattern (14 bp):
CAAGGAAGAAATTT
Found at i:1591624 original size:79 final size:79
Alignment explanation
Indices: 1591493--1591639 Score: 249
Period size: 79 Copynumber: 1.9 Consensus size: 79
1591483 TTTGTCAACT
*
1591493 TCAGTTGGTTATGATCATCTTTTAAACTTTACATATTGGTTTGAACCGATTAATCAATGATTTTT
1 TCAGTTGGTTATGATCATCTTTTAAACTTTACATATTGGTTTGAACAGATTAATCAATGATTTTT
1591558 TCTGATGGTAAACC
66 TCTGATGGTAAACC
* * * *
1591572 TCAGTTGGTTATGATTATCTTTTGAACTTTACATATTGGTTTTAACAGATTAATCAATTATTTTT
1 TCAGTTGGTTATGATCATCTTTTAAACTTTACATATTGGTTTGAACAGATTAATCAATGATTTTT
1591637 TCT
66 TCT
1591640 TGCCTTACCA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
79 63 1.00
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (79 bp):
TCAGTTGGTTATGATCATCTTTTAAACTTTACATATTGGTTTGAACAGATTAATCAATGATTTTT
TCTGATGGTAAACC
Found at i:1596056 original size:21 final size:22
Alignment explanation
Indices: 1596015--1596067 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 22
1596005 ATAATTATTT
*
1596015 TATATATAAATTTATTTAAAT-A
1 TATATA-AAATTTATTAAAATAA
1596037 TAT-TAAAATCTTATTAAAATAA
1 TATATAAAAT-TTATTAAAATAA
1596059 TATATAAAA
1 TATATAAAA
1596068 AATTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 4 0.15
21 11 0.41
22 7 0.26
23 5 0.19
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
TATATAAAATTTATTAAAATAA
Found at i:1596076 original size:7 final size:7
Alignment explanation
Indices: 1596066--1596090 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
1596056 TAATATATAA
1596066 AAAATTT
1 AAAATTT
1596073 AAAATTT
1 AAAATTT
1596080 AAAATTT
1 AAAATTT
1596087 AAAA
1 AAAA
1596091 ACTAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (7 bp):
AAAATTT
Found at i:1596798 original size:10 final size:10
Alignment explanation
Indices: 1596785--1596816 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
1596775 CCCTTCCTTT
1596785 CCCCCTCCCC
1 CCCCCTCCCC
1596795 CCCCCTCCCC
1 CCCCCTCCCC
1596805 CCCCC-CCCC
1 CCCCCTCCCC
1596814 CCC
1 CCC
1596817 AAAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 7 0.32
10 15 0.68
ACGTcount: A:0.00, C:0.94, G:0.00, T:0.06
Consensus pattern (10 bp):
CCCCCTCCCC
Found at i:1596803 original size:16 final size:15
Alignment explanation
Indices: 1596784--1596814 Score: 53
Period size: 15 Copynumber: 2.0 Consensus size: 15
1596774 TCCCTTCCTT
1596784 TCCCCCTCCCCCCCCC
1 TCCCCC-CCCCCCCCC
1596800 TCCCCCCCCCCCCCC
1 TCCCCCCCCCCCCCC
1596815 CCAAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.00, C:0.90, G:0.00, T:0.10
Consensus pattern (15 bp):
TCCCCCCCCCCCCCC
Found at i:1596815 original size:16 final size:16
Alignment explanation
Indices: 1596784--1596815 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
1596774 TCCCTTCCTT
*
1596784 TCCCCCTCCCCCCCCC
1 TCCCCCCCCCCCCCCC
1596800 TCCCCCCCCCCCCCCC
1 TCCCCCCCCCCCCCCC
1596816 CAAAAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.91, G:0.00, T:0.09
Consensus pattern (16 bp):
TCCCCCCCCCCCCCCC
Found at i:1619701 original size:30 final size:30
Alignment explanation
Indices: 1619652--1619735 Score: 89
Period size: 30 Copynumber: 2.8 Consensus size: 30
1619642 TATTATATTT
* *
1619652 AAATAAATCCTTAATTTTTATTTTAC-ATCC
1 AAATAAATCCTTAAATTTTAATTT-CTATCC
* *
1619682 AACTAAATCTTTAAATTTTAATTTCTATCC
1 AAATAAATCCTTAAATTTTAATTTCTATCC
* **
1619712 AAATAAAACCTTAACCTTTAATTT
1 AAATAAATCCTTAAATTTTAATTT
1619736 ATACTTAAAT
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
29 1 0.02
30 43 0.98
ACGTcount: A:0.39, C:0.17, G:0.00, T:0.44
Consensus pattern (30 bp):
AAATAAATCCTTAAATTTTAATTTCTATCC
Found at i:1620183 original size:20 final size:20
Alignment explanation
Indices: 1620158--1620197 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
1620148 TAAAATTATC
* *
1620158 AAAATTTAAACTTTAATATT
1 AAAATTAAAAATTTAATATT
1620178 AAAATTAAAAATTTAATATT
1 AAAATTAAAAATTTAATATT
1620198 CTATTAACAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
AAAATTAAAAATTTAATATT
Found at i:1626948 original size:32 final size:33
Alignment explanation
Indices: 1626894--1626965 Score: 103
Period size: 34 Copynumber: 2.2 Consensus size: 33
1626884 ATATTAAAAA
1626894 TTTTTAAAATTAATATTGAATTTGAATCAATATT
1 TTTTTAAAATTAATATTGAATTTGAATCAA-ATT
*
1626928 TTTTTAAAATTAAT-TT-AATTTGAATTAAATT
1 TTTTTAAAATTAATATTGAATTTGAATCAAATT
*
1626959 TTATTAA
1 TTTTTAA
1626966 TTTGATTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
31 9 0.25
32 11 0.31
33 2 0.06
34 14 0.39
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (33 bp):
TTTTTAAAATTAATATTGAATTTGAATCAAATT
Found at i:1626985 original size:20 final size:19
Alignment explanation
Indices: 1626941--1626989 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
1626931 TTAAAATTAA
1626941 TTTAATTTGAATTAAATTT
1 TTTAATTTGAATTAAATTT
*
1626960 TATTAATTTGATTTATCAATTT
1 T-TTAATTTGAATTA--AATTT
*
1626982 TTAAATTT
1 TTTAATTT
1626990 TTATATATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 1 0.04
20 12 0.48
21 6 0.24
22 6 0.24
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (19 bp):
TTTAATTTGAATTAAATTT
Found at i:1627097 original size:18 final size:18
Alignment explanation
Indices: 1627065--1627107 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
1627055 ATTTTATAAA
*
1627065 AATTTAA-AAATATATAT
1 AATTTAATAAAAATATAT
1627082 AATTTAATAAAAATATAT
1 AATTTAATAAAAATATAT
1627100 AATTTAAT
1 AATTTAAT
1627108 TCATTTCGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
AATTTAATAAAAATATAT
Found at i:1628660 original size:16 final size:16
Alignment explanation
Indices: 1628634--1628672 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
1628624 ATGGTAGTAC
1628634 TTGTT-ATAAAAATGG
1 TTGTTCATAAAAATGG
1628649 TTGTTCATAAAAATGG
1 TTGTTCATAAAAATGG
*
1628665 TTGGTCAT
1 TTGTTCAT
1628673 TATCATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.33, C:0.05, G:0.21, T:0.41
Consensus pattern (16 bp):
TTGTTCATAAAAATGG
Found at i:1641001 original size:17 final size:16
Alignment explanation
Indices: 1640974--1641006 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
1640964 CAATTACGAT
1640974 TTTATATATATATAAA
1 TTTATATATATATAAA
1640990 TTTATATCATATATAAA
1 TTTATAT-ATATATAAA
1641007 AAATAATATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TTTATATATATATAAA
Found at i:1646797 original size:11 final size:10
Alignment explanation
Indices: 1646783--1646813 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
1646773 GTCTCATCCT
1646783 TTTTTTTTTC
1 TTTTTTTTTC
1646793 TTTTTTTTTC
1 TTTTTTTTTC
1646803 GTTTTTTTTTC
1 -TTTTTTTTTC
1646814 GTCTTCCGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:1646814 original size:11 final size:11
Alignment explanation
Indices: 1646783--1646815 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
1646773 GTCTCATCCT
1646783 TTTTTTTTTC-
1 TTTTTTTTTCG
1646793 TTTTTTTTTCG
1 TTTTTTTTTCG
1646804 TTTTTTTTTCG
1 TTTTTTTTTCG
1646815 T
1 T
1646816 CTTCCGCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTCG
Found at i:1646893 original size:9 final size:9
Alignment explanation
Indices: 1646859--1646891 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
1646849 TCAATAATTG
1646859 ATCATCACC
1 ATCATCACC
1646868 ATC-TCACC
1 ATCATCACC
*
1646876 ATCATCATC
1 ATCATCACC
1646885 ATCATCA
1 ATCATCA
1646892 TCGCTGATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.33, C:0.39, G:0.00, T:0.27
Consensus pattern (9 bp):
ATCATCACC
Found at i:1647867 original size:12 final size:12
Alignment explanation
Indices: 1647846--1647881 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
1647836 AAAGAAAGAA
1647846 GAAA-GGAGATG
1 GAAATGGAGATG
1647857 GAAATGGAGATG
1 GAAATGGAGATG
*
1647869 GAAATGGAAATG
1 GAAATGGAGATG
1647881 G
1 G
1647882 GAAGAAGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 4 0.17
12 19 0.83
ACGTcount: A:0.44, C:0.00, G:0.42, T:0.14
Consensus pattern (12 bp):
GAAATGGAGATG
Found at i:1648137 original size:12 final size:12
Alignment explanation
Indices: 1648120--1648145 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1648110 TCATTAAACT
1648120 TTTAAATACTCC
1 TTTAAATACTCC
1648132 TTTAAATACTCC
1 TTTAAATACTCC
1648144 TT
1 TT
1648146 CTATCCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.23, G:0.00, T:0.46
Consensus pattern (12 bp):
TTTAAATACTCC
Found at i:1653766 original size:20 final size:21
Alignment explanation
Indices: 1653741--1653790 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
1653731 TCCGAAATTA
1653741 ATAAAATATTA-TTTTTAAAT
1 ATAAAATATTATTTTTTAAAT
*
1653761 ATAAAATATTATTTTTTAAGT
1 ATAAAATATTATTTTTTAAAT
1653782 AT-AAATATT
1 ATAAAATATT
1653791 TAAATATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
ATAAAATATTATTTTTTAAAT
Found at i:1653796 original size:8 final size:8
Alignment explanation
Indices: 1653781--1653820 Score: 62
Period size: 8 Copynumber: 5.0 Consensus size: 8
1653771 ATTTTTTAAG
1653781 TATAAATA
1 TATAAATA
*
1653789 TTTAAATA
1 TATAAATA
*
1653797 TATAATTA
1 TATAAATA
1653805 TATAAATA
1 TATAAATA
1653813 TATAAATA
1 TATAAATA
1653821 AAAAATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
TATAAATA
Found at i:1653827 original size:24 final size:24
Alignment explanation
Indices: 1653781--1653828 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
1653771 ATTTTTTAAG
* * *
1653781 TATAAATATTTAAATATATAATTA
1 TATAAATATATAAATAAAAAATTA
1653805 TATAAATATATAAATAAAAAATTA
1 TATAAATATATAAATAAAAAATTA
1653829 ATTTAAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (24 bp):
TATAAATATATAAATAAAAAATTA
Found at i:1659766 original size:29 final size:28
Alignment explanation
Indices: 1659708--1659786 Score: 81
Period size: 29 Copynumber: 2.8 Consensus size: 28
1659698 TTTATAAATG
*
1659708 ATAAATCAATCATAATCAAATAAATTTAA
1 ATAAATAAATCATAATCAAATAAA-TTAA
*
1659737 ATAAATAAATCCTAATCAAACATAAA-TAA
1 ATAAATAAATCATAATC-AA-ATAAATTAA
*
1659766 ATCAAATAAA-CATAAACAAAT
1 AT-AAATAAATCATAATCAAAT
1659787 TTTAAAATAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
27 2 0.05
28 2 0.05
29 25 0.58
30 9 0.21
31 5 0.12
ACGTcount: A:0.62, C:0.13, G:0.00, T:0.25
Consensus pattern (28 bp):
ATAAATAAATCATAATCAAATAAATTAA
Found at i:1659778 original size:19 final size:21
Alignment explanation
Indices: 1659737--1659786 Score: 68
Period size: 19 Copynumber: 2.5 Consensus size: 21
1659727 ATAAATTTAA
*
1659737 ATAAATAAATCCTAATCAAAC
1 ATAAATAAATCCAAATCAAAC
1659758 ATAAATAAAT-CAAAT-AAAC
1 ATAAATAAATCCAAATCAAAC
*
1659777 ATAAACAAAT
1 ATAAATAAAT
1659787 TTTAAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 13 0.48
20 4 0.15
21 10 0.37
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.22
Consensus pattern (21 bp):
ATAAATAAATCCAAATCAAAC
Found at i:1660179 original size:21 final size:21
Alignment explanation
Indices: 1660154--1660193 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1660144 TTTTTTTACC
*
1660154 AAAAATTTTACTAAA-GTTAAA
1 AAAAATCTTAC-AAATGTTAAA
1660175 AAAAATCTTACAAATGTTA
1 AAAAATCTTACAAATGTTA
1660194 TGAAAATCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.55, C:0.07, G:0.05, T:0.33
Consensus pattern (21 bp):
AAAAATCTTACAAATGTTAAA
Found at i:1662323 original size:2 final size:2
Alignment explanation
Indices: 1662316--1662358 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
1662306 ACTCAAAAAT
*
1662316 TA TA TA TA TA TA TA TA TA TA TA TC TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1662358 T
1 T
1662359 TCATGATGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1668069 original size:18 final size:18
Alignment explanation
Indices: 1668048--1668089 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
1668038 AGGTATAACA
1668048 TATATAAAATATATATTT
1 TATATAAAATATATATTT
* * *
1668066 TATATAGAATTTATTTTT
1 TATATAAAATATATATTT
1668084 TATATA
1 TATATA
1668090 CTACCAACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (18 bp):
TATATAAAATATATATTT
Found at i:1668842 original size:27 final size:26
Alignment explanation
Indices: 1668807--1668863 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
1668797 AAATAATAAT
*
1668807 AAAAATTACTATAACTT-TGATTGAAAA
1 AAAAATTACTATAA-TTATAATT-AAAA
1668834 AAAAATTACTATAATTATAATTAAAA
1 AAAAATTACTATAATTATAATTAAAA
1668860 AAAA
1 AAAA
1668864 TTTCAATGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 10 0.36
27 18 0.64
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.32
Consensus pattern (26 bp):
AAAAATTACTATAATTATAATTAAAA
Found at i:1669806 original size:24 final size:22
Alignment explanation
Indices: 1669766--1669815 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
1669756 AAAAATTTGT
1669766 TAAATTTTATCACTTTACTTAAA
1 TAAATTTTATCACTTTA-TTAAA
*
1669789 TAAATCTTTAT-ACTTTTATTATA
1 TAAAT-TTTATCAC-TTTATTAAA
1669812 TAAA
1 TAAA
1669816 AATAAGCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (22 bp):
TAAATTTTATCACTTTATTAAA
Found at i:1670833 original size:18 final size:18
Alignment explanation
Indices: 1670798--1670836 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1670788 ATGAACTGAA
* *
1670798 TTTTTTTGAATTATTTTC
1 TTTTTTAGAATTACTTTC
*
1670816 TTTTTTAGAATTGCTTTC
1 TTTTTTAGAATTACTTTC
1670834 TTT
1 TTT
1670837 GGATACATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (18 bp):
TTTTTTAGAATTACTTTC
Found at i:1673025 original size:33 final size:33
Alignment explanation
Indices: 1672988--1673101 Score: 111
Period size: 33 Copynumber: 3.3 Consensus size: 33
1672978 GCCGTCTAAT
1672988 AGGATGAGGCAAGGGTGGTGGCCTAGAGCAAGG
1 AGGATGAGGCAAGGGTGGTGGCCTAGAGCAAGG
* * * * *
1673021 AGGATGAGGTAATGGTGGTGGCCTTGGGTGAGGATGGGG
1 AGGATGAGGCAAGGGTGGTGGCC-T---AGAGCA--AGG
*
1673060 AGGATGAGGCAAGGGTGGTGGCCTAGAACAAGG
1 AGGATGAGGCAAGGGTGGTGGCCTAGAGCAAGG
*
1673093 AGGGTGAGG
1 AGGATGAGG
1673102 GATTGGTGGT
Statistics
Matches: 63, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
33 31 0.49
34 1 0.02
35 3 0.05
37 4 0.06
38 1 0.02
39 23 0.37
ACGTcount: A:0.25, C:0.09, G:0.51, T:0.16
Consensus pattern (33 bp):
AGGATGAGGCAAGGGTGGTGGCCTAGAGCAAGG
Found at i:1673109 original size:72 final size:72
Alignment explanation
Indices: 1672988--1673134 Score: 233
Period size: 72 Copynumber: 2.0 Consensus size: 72
1672978 GCCGTCTAAT
* * *
1672988 AGGATGAGGCAAGGGTGGTGGCCTAGAGCAAGGAGGATGAGGTAATGGTGGTGGCCTTGGGTGAG
1 AGGATGAGGCAAGGGTGGTGGCCTAGAACAAGGAGGATGAGGGAATGGTGGTCGCCTTGGGTGAG
1673053 GATGGG-G
66 GA-GGGTG
* *
1673060 AGGATGAGGCAAGGGTGGTGGCCTAGAACAAGGAGGGTGAGGGATTGGTGGTCGCCTTGGGTGAG
1 AGGATGAGGCAAGGGTGGTGGCCTAGAACAAGGAGGATGAGGGAATGGTGGTCGCCTTGGGTGAG
1673125 GAGGGTG
66 GAGGGTG
1673132 AGG
1 AGG
1673135 GGGGAATGGT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
71 3 0.04
72 66 0.96
ACGTcount: A:0.22, C:0.09, G:0.52, T:0.18
Consensus pattern (72 bp):
AGGATGAGGCAAGGGTGGTGGCCTAGAACAAGGAGGATGAGGGAATGGTGGTCGCCTTGGGTGAG
GAGGGTG
Found at i:1675864 original size:16 final size:18
Alignment explanation
Indices: 1675832--1675867 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
1675822 TAAAATTGAA
1675832 TTATATATTATTATTAAT
1 TTATATATTATTATTAAT
1675850 TTATATA-TATT-TTAAT
1 TTATATATTATTATTAAT
1675866 TT
1 TT
1675868 TTTATAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.39
17 4 0.22
18 7 0.39
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTATATATTATTATTAAT
Found at i:1676026 original size:18 final size:17
Alignment explanation
Indices: 1675981--1676028 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
1675971 CTAAACCGAA
1675981 TCAATAAAATTTTAAAT
1 TCAATAAAATTTTAAAT
*
1675998 TCGAATCAAATTTTAAAAAT
1 TC-AATAAAATTTT--AAAT
1676018 TC-ATAAAATTT
1 TCAATAAAATTT
1676029 CTTAAAAGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 2 0.08
18 18 0.69
20 6 0.23
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.40
Consensus pattern (17 bp):
TCAATAAAATTTTAAAT
Found at i:1679694 original size:31 final size:31
Alignment explanation
Indices: 1679651--1679713 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
1679641 ATATACAATC
*
1679651 AATGAATCAGATGATGATAACTT-ATTAATGA
1 AATGAATCAGATGATAAT-ACTTCATTAATGA
* *
1679682 AATGAATTAGATGATAATATTTCATTAATGA
1 AATGAATCAGATGATAATACTTCATTAATGA
1679713 A
1 A
1679714 TAAAATTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.11
31 25 0.89
ACGTcount: A:0.46, C:0.05, G:0.14, T:0.35
Consensus pattern (31 bp):
AATGAATCAGATGATAATACTTCATTAATGA
Found at i:1681558 original size:10 final size:10
Alignment explanation
Indices: 1681527--1681568 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
1681517 AATTTAAAGT
1681527 AATATATAAAA
1 AATA-ATAAAA
**
1681538 AA-AATTCAA
1 AATAATAAAA
1681547 AATAATAAAA
1 AATAATAAAA
1681557 AATAATAAAA
1 AATAATAAAA
1681567 AA
1 AA
1681569 AGTTTTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
9 6 0.23
10 18 0.69
11 2 0.08
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (10 bp):
AATAATAAAA
Found at i:1681567 original size:19 final size:20
Alignment explanation
Indices: 1681527--1681567 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
1681517 AATTTAAAGT
*
1681527 AATATATAAAAAAAATTCAA
1 AATATATAAAAAAAATTAAA
1681547 AATA-ATAAAAAATAA-TAAA
1 AATATATAAAAAA-AATTAAA
1681566 AA
1 AA
1681568 AAGTTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (20 bp):
AATATATAAAAAAAATTAAA
Found at i:1681678 original size:25 final size:27
Alignment explanation
Indices: 1681626--1681678 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
1681616 TTTAGGCCAG
* *
1681626 TTCAGCGGTTCGATCGGTTGGTTTGGA
1 TTCAGCGGTTCGATCGGCTGGTCTGGA
1681653 TTCAGCGGTTCGA-C-GCTGGTCTGGA
1 TTCAGCGGTTCGATCGGCTGGTCTGGA
1681678 T
1 T
1681679 CGATTCAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 10 0.42
26 1 0.04
27 13 0.54
ACGTcount: A:0.11, C:0.19, G:0.36, T:0.34
Consensus pattern (27 bp):
TTCAGCGGTTCGATCGGCTGGTCTGGA
Found at i:1682481 original size:9 final size:9
Alignment explanation
Indices: 1682435--1682474 Score: 62
Period size: 9 Copynumber: 4.3 Consensus size: 9
1682425 CCGTAACCAG
*
1682435 AAAAAGAAA
1 AAAAATAAA
1682444 GAAAAATAAA
1 -AAAAATAAA
1682454 AAAAATAAA
1 AAAAATAAA
1682463 AAAAATAAA
1 AAAAATAAA
1682472 AAA
1 AAA
1682475 GAAAAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
9 21 0.72
10 8 0.28
ACGTcount: A:0.88, C:0.00, G:0.05, T:0.07
Consensus pattern (9 bp):
AAAAATAAA
Found at i:1682481 original size:18 final size:18
Alignment explanation
Indices: 1682435--1682481 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
1682425 CCGTAACCAG
*
1682435 AAAAAG-AAAGAAAAATA
1 AAAAAGAAAAAAAAAATA
1682452 AAAAA-AATAAAAAAAATA
1 AAAAAGAA-AAAAAAAATA
1682470 AAAAAGAAAAAA
1 AAAAAGAAAAAA
1682482 TAAGTAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 6 0.23
18 18 0.69
19 2 0.08
ACGTcount: A:0.87, C:0.00, G:0.06, T:0.06
Consensus pattern (18 bp):
AAAAAGAAAAAAAAAATA
Found at i:1682489 original size:18 final size:17
Alignment explanation
Indices: 1682441--1682489 Score: 59
Period size: 16 Copynumber: 3.0 Consensus size: 17
1682431 CCAGAAAAAG
1682441 AAAG-AAAAATAA-AAA
1 AAAGAAAAAATAATAAA
*
1682456 AAATAAAAAA-AATAAA
1 AAAGAAAAAATAATAAA
1682472 AAAGAAAAAATAAGTAAA
1 AAAGAAAAAATAA-TAAA
1682490 TAAATAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
15 5 0.18
16 17 0.61
17 2 0.07
18 4 0.14
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.10
Consensus pattern (17 bp):
AAAGAAAAAATAATAAA
Found at i:1682768 original size:48 final size:48
Alignment explanation
Indices: 1682647--1683656 Score: 906
Period size: 49 Copynumber: 20.6 Consensus size: 48
1682637 TTTAAAATGT
* * * * *
1682647 TCCTTTAAGCAGAGGCTCAACAAATTT-AAAATTCATAATTTTTGGAAAA-T
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATT--T-A-TCTTGAAAAAGC
**
1682697 TCCTCTAAATAGAGGCTCAACAACTTTAAAAATTTATCTTGAAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGAAAAAGC
* * *
1682745 TCCTCTAAACAGAAGCTCAACAACTTTAAAAAATTCATCTTGAGAAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTT-AAAAATTTATCTT--GAAAAAGC
* * * *
1682796 TCCTCTAAACAGAGGTTCAACAACTTT-AAAATTCATCTTGGAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGAAAAAGC
* * * *
1682843 -CCTTCTCAA-TAAAGGCTCAAAAACTTTAAAATTTTATCTTGAAAAAAGC
1 TCC-TCT-AAGCAGAGGCTCAACAACTTTAAAAATTTATCTTG-AAAAAGC
* *
1682892 TCCTCTCAGCAGAGGCTCCACAACTTTAAAAATTCATCATCTTGAAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATT--T-ATCTTGAAAAAGC
*** * *
1682943 TCCTCTAATTGGAGGCTCAACAACTTTAAAAATTCATATTGAGAAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTTATCTT--GAAAAAGC
* *
1682993 TCCTATAAGCA-AGGCTCCACAACTTT-AAAATTCTATCTTGAAAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATT-TATCTTG-AAAAAGC
* * * * * * *
1683041 TCATCTCAGTAAAAGCTTC-ATAACTTTAAAAATTCTCATCTTTAAAAAGGC
1 TCCTCTAAGCAGAGGC-TCAACAACTTTAAAAATT-T-ATCTTGAAAAA-GC
* * ** *
1683092 ACATCTCAA-CAGAGGCTCAATGACTTT-AAAATTTATC-TCAAAAAGC
1 TCCTCT-AAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGAAAAAGC
* * * *
1683138 TCTTCTCAA-CAAAGGCTCAATAACTTTAAAATTTTATCTTGAAAAAAGC
1 TCCTCT-AAGCAGAGGCTCAACAACTTTAAAAATTTATCTTG-AAAAAGC
* * * *
1683187 TCCTCTTAGCATAGGCTCCACAACTTTAAAAATTCATCATCTTGGAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATT--T-ATCTTGAAAAAGC
* * *
1683238 TCCTCTAAGCAGAGACTCAACAACTTTAAAAATTCATCTTGAAAAAATC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTTATCTTG-AAAAAGC
**
1683287 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATCCATCTTGAAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGAAAAAGC
* * * *
1683335 TCATCTAAGTAGAGACTCAACAACTTTAAAATTCATTATCTT-AGAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAAT--TTATCTTGA-AAAAGC
*
1683385 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTTATCTTAAAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGAAAAAGC
* * *
1683433 TCCTCTAAGCAGAGGCTTAACAACTTT-AAAATCTATCTTAAAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGAAAAAGC
* *
1683480 TCCTCTAAGCAGAGTG-TCAACAATTTTAAAAATTCATCTTGAAAAAGC
1 TCCTCTAAGCAGAG-GCTCAACAACTTTAAAAATTTATCTTGAAAAAGC
* * *
1683528 TTCTCTAAGCAGAGTCTCAACAACTTT-AAAATTCTCAT-TTTAGAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATT-T-ATCTTGA-AAAAGC
* * *
1683577 TCCTTTAAGCAGAGGCTCAACAA-TTTTAAAATTCTCATTTTGAAAAAGC
1 TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATT-T-ATCTTGAAAAAGC
* * *
1683626 TCATCT-AGACATAGGCTTAACAACTTTAAAA
1 TCCTCTAAG-CAGAGGCTCAACAACTTTAAAA
1683657 TTTCATTAAA
Statistics
Matches: 805, Mismatches: 108, Indels: 94
0.80 0.11 0.09
Matches are distributed among these distances:
46 27 0.03
47 96 0.12
48 198 0.25
49 223 0.28
50 112 0.14
51 136 0.17
52 13 0.02
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.29
Consensus pattern (48 bp):
TCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGAAAAAGC
Found at i:1683189 original size:295 final size:294
Alignment explanation
Indices: 1682707--1683632 Score: 1132
Period size: 295 Copynumber: 3.2 Consensus size: 294
1682697 TCCTCTAAAT
* ** *
1682707 AGAGGCTCAACAACTTTAAAAATT-TATCTTGAAAAAGCTCCTCTAAACAGAAGCTCAACAACTT
1 AGAGGCTCAACAACTTT-AAAATTCTATCTTGAAAAAGCTCATCTAAGTAAAAGCTCAACAACTT
* * * *
1682771 TAAAAAAT-TCATCTTGAGAAAAAGCTCCTCTAAACAGAGGTTCAACAACTTTAAAATTCATCTT
65 TAAAAATTCTCATCTTTAG-AAAAGCTCCTCT-AACAGAGGCTCAACAACTTTAAAATTTATCTT
** * * *
1682835 GGAAAAGCCCTTCTCAATAAAGGCTCAAAAACTTTAAAATTTTATCTTGAAAAAAGCTCCTCTCA
128 AAAAAAGCTCTTCTCAACAAAGGCTCAAAAACTTTAAAATTTTATCTTGAAAAAAGCTCCTCTAA
*** *
1682900 GCAGAGGCTCCACAACTTTAAAAATTCATCATCTTGAAAAAGCTCCTCTAATTGGAGGCTCAACA
193 GCAGAGGCTCCACAACTTTAAAAATTCATCATCTTGAAAAAGCTCCTCTAAGCAGAGACTCAACA
1682965 ACTTTAAAAATTCATATTGAGAAAAAGCTCCTATAAGC
258 ACTTTAAAAATTCAT-TTGAGAAAAAGCTCCTATAAGC
* * *
1683003 A-AGGCTCCACAACTTTAAAATTCTATCTTGAAAAAAGCTCATCTCAGTAAAAGCTTC-ATAACT
1 AGAGGCTCAACAACTTTAAAATTCTATCTTG-AAAAAGCTCATCTAAGTAAAAGC-TCAACAACT
* * **
1683066 TTAAAAATTCTCATCTTTA-AAAAGGCACATCTCAACAGAGGCTCAATGACTTTAAAATTTATC-
64 TTAAAAATTCTCATCTTTAGAAAA-GCTCCTCT-AACAGAGGCTCAACAACTTTAAAATTTATCT
* * *
1683129 TCAAAAAGCTCTTCTCAACAAAGGCTCAATAACTTTAAAATTTTATCTTGAAAAAAGCTCCTCTT
127 TAAAAAAGCTCTTCTCAACAAAGGCTCAAAAACTTTAAAATTTTATCTTGAAAAAAGCTCCTCTA
* *
1683194 AGCATAGGCTCCACAACTTTAAAAATTCATCATCTTGGAAAAGCTCCTCTAAGCAGAGACTCAAC
192 AGCAGAGGCTCCACAACTTTAAAAATTCATCATCTTGAAAAAGCTCCTCTAAGCAGAGACTCAAC
* *
1683259 AACTTTAAAAATTCATCTTGA-AAAAATCTCCTCTAAGC
257 AACTTTAAAAATTCAT-TTGAGAAAAAGCTCCTATAAGC
* * *
1683297 AGAGGCTCAACAACTTTAAAAATCCATCTTGAAAAAGCTCATCTAAGT-AGAGACTCAACAACTT
1 AGAGGCTCAACAACTTTAAAATTCTATCTTGAAAAAGCTCATCTAAGTAAAAG-CTCAACAACTT
*
1683361 T-AAAATTCATTATC-TTAGAAAAGCTCCTCTAAGCAGAGGCTCAACAACTTTAAAAATTTATCT
65 TAAAAATTC-TCATCTTTAGAAAAGCTCCTCTAA-CAGAGGCTCAACAACTTT-AAAATTTATCT
* * * * *
1683424 TAAAAAAGCTCCTCT-AAGCAGAGGCTTAACAACTTTAAAA-TCTATCTT-AAAAAAGCTCCTCT
127 TAAAAAAGCTCTTCTCAA-CAAAGGCTCAAAAACTTTAAAATTTTATCTTGAAAAAAGCTCCTCT
* * * *
1683486 AAGCAGAGTG-TCAACAATTTTAAAAA-T--TCATCTTGAAAAAGCTTCTCTAAGCAGAGTCTCA
191 AAGCAGAG-GCTCCACAACTTTAAAAATTCATCATCTTGAAAAAGCTCCTCTAAGCAGAGACTCA
* * *
1683547 ACAACTTTAAAATTCTCATTTTAG-AAAAGCTCCTTTAAGC
255 ACAACTTTAAAAAT-TCATTTGAGAAAAAGCTCCTATAAGC
* *
1683587 AGAGGCTCAACAATTTTAAAATTCTCATTTTGAAAAAGCTCATCTA
1 AGAGGCTCAACAACTTTAAAATTCT-ATCTTGAAAAAGCTCATCTA
1683633 GACATAGGCT
Statistics
Matches: 549, Mismatches: 63, Indels: 41
0.84 0.10 0.06
Matches are distributed among these distances:
290 83 0.15
291 23 0.04
292 3 0.01
293 71 0.13
294 74 0.13
295 221 0.40
296 64 0.12
297 10 0.02
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.29
Consensus pattern (294 bp):
AGAGGCTCAACAACTTTAAAATTCTATCTTGAAAAAGCTCATCTAAGTAAAAGCTCAACAACTTT
AAAAATTCTCATCTTTAGAAAAGCTCCTCTAACAGAGGCTCAACAACTTTAAAATTTATCTTAAA
AAAGCTCTTCTCAACAAAGGCTCAAAAACTTTAAAATTTTATCTTGAAAAAAGCTCCTCTAAGCA
GAGGCTCCACAACTTTAAAAATTCATCATCTTGAAAAAGCTCCTCTAAGCAGAGACTCAACAACT
TTAAAAATTCATTTGAGAAAAAGCTCCTATAAGC
Found at i:1684111 original size:229 final size:227
Alignment explanation
Indices: 1683796--1684248 Score: 719
Period size: 229 Copynumber: 2.0 Consensus size: 227
1683786 TAATACTTGA
* *
1683796 ATATCACCACCGAGTGATTTTGAAAATATCTTGGATTTCACCACCAAGAAAATGCAAATGAAAAT
1 ATATCACCACCGAGTGATTTTGAAAATATCTTGGATTTCACCACCAAAAAAATGAAAATGAAAAT
* * *
1683861 TTAAACTTTAAATTTGGATATCACCATCGATAATATGCAAATGACTTCAGATATCACCACCGAAG
66 TTAAACTTTAAACTCGGATATCACCACCGATAATATGCAAATGACTTCAGATATCACCA--GAAG
* * * * *
1683926 GAAACTC-GAATATCACTATTGAGAAAATGCAATTCAAGCTTTAATACTCAAATATCACCACCGA
129 AAAACTCAG-ATATCACCATCGAAAAAATGCAATTCAAGCTTTAATACTCAAATATCACCACCAA
*
1683990 GAGAATGCAAATGCAAATTCAAACTTTAAACTAAG
193 GAAAATGCAAATGCAAATTCAAACTTTAAACTAAG
1684025 ATATCACCACCGAGTGATTTTGAAAATATCTTGGATTTCACCACCAAAAAAATGAAAATGAAAAT
1 ATATCACCACCGAGTGATTTTGAAAATATCTTGGATTTCACCACCAAAAAAATGAAAATGAAAAT
* *
1684090 TTAAACTTTAAACTCGGATATCACCACCGATAATATGCAAATGACTTCGGATATCACTAGAAGAA
66 TTAAACTTTAAACTCGGATATCACCACCGATAATATGCAAATGACTTCAGATATCACCAGAAGAA
* ** *
1684155 AACTCAGATATCACCATCGAAAAAATGTAATTCAAGCTTTAATACTCGGATATCACCATCAAGAA
131 AACTCAGATATCACCATCGAAAAAATGCAATTCAAGCTTTAATACTCAAATATCACCACCAAGAA
1684220 AATGCAAATGCAAATTCAAACTTTAAACT
196 AATGCAAATGCAAATTCAAACTTTAAACT
1684249 TGGTTATCAT
Statistics
Matches: 206, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
227 88 0.43
228 1 0.00
229 117 0.57
ACGTcount: A:0.43, C:0.19, G:0.12, T:0.26
Consensus pattern (227 bp):
ATATCACCACCGAGTGATTTTGAAAATATCTTGGATTTCACCACCAAAAAAATGAAAATGAAAAT
TTAAACTTTAAACTCGGATATCACCACCGATAATATGCAAATGACTTCAGATATCACCAGAAGAA
AACTCAGATATCACCATCGAAAAAATGCAATTCAAGCTTTAATACTCAAATATCACCACCAAGAA
AATGCAAATGCAAATTCAAACTTTAAACTAAG
Found at i:1686373 original size:11 final size:11
Alignment explanation
Indices: 1686357--1686395 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
1686347 ACCTCTTTTA
1686357 TTTTTTTTATC
1 TTTTTTTTATC
1686368 TTTTTTTTA-C
1 TTTTTTTTATC
*
1686378 TTTTTTTTTTC
1 TTTTTTTTATC
*
1686389 ATTTTTT
1 TTTTTTT
1686396 CACTTTCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.36
11 16 0.64
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTTATC
Found at i:1686381 original size:21 final size:21
Alignment explanation
Indices: 1686352--1686401 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
1686342 TTCTCACCTC
*
1686352 TTTTA-TTTTTTTTATCTTTT
1 TTTTACTTTTTTTTATCATTT
*
1686372 TTTTACTTTTTTTTTTCATTT
1 TTTTACTTTTTTTTATCATTT
*
1686393 TTTCACTTT
1 TTTTACTTT
1686402 CTCTTTTTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 5 0.19
21 21 0.81
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTACTTTTTTTTATCATTT
Found at i:1686385 original size:10 final size:10
Alignment explanation
Indices: 1686352--1686385 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
1686342 TTCTCACCTC
1686352 TTTTA-TTTT
1 TTTTACTTTT
1686361 TTTTATCTTTT
1 TTTTA-CTTTT
1686372 TTTTACTTTT
1 TTTTACTTTT
1686382 TTTT
1 TTTT
1686386 TTCATTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 5 0.22
10 9 0.39
11 9 0.39
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTACTTTT
Found at i:1686408 original size:21 final size:21
Alignment explanation
Indices: 1686369--1686408 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
1686359 TTTTTTATCT
* * *
1686369 TTTTTTTACTTTTTTTTTTCA
1 TTTTTTCACTTTCTCTTTTCA
1686390 TTTTTTCACTTTCTCTTTT
1 TTTTTTCACTTTCTCTTTT
1686409 TGGGATTGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTTTCACTTTCTCTTTTCA
Found at i:1687698 original size:24 final size:24
Alignment explanation
Indices: 1687671--1687717 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
1687661 AATATCATAA
1687671 TTTTT-TTAAAAAAATATATTATTC
1 TTTTTATT-AAAAAATATATTATTC
* *
1687695 TTTTTATTATAAAATATTTTATT
1 TTTTTATTAAAAAATATATTATT
1687718 ATCAAACAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 18 0.90
25 2 0.10
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (24 bp):
TTTTTATTAAAAAATATATTATTC
Found at i:1688335 original size:16 final size:16
Alignment explanation
Indices: 1688314--1688388 Score: 60
Period size: 16 Copynumber: 4.5 Consensus size: 16
1688304 TGGATTTTGG
1688314 GGGGTTTTGAATTTTA
1 GGGGTTTTGAATTTTA
* *
1688330 GGGGTTTCGGATTTTA
1 GGGGTTTTGAATTTTA
* * *
1688346 TGGGGGGTTTGGATTTAA
1 --GGGGTTTTGAATTTTA
* *
1688364 GGGATTTTGGATTTTTA
1 GGGGTTTT-GAATTTTA
1688381 GGGGTTTT
1 GGGGTTTT
1688389 AAAAACTTAG
Statistics
Matches: 45, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
16 20 0.44
17 12 0.27
18 13 0.29
ACGTcount: A:0.15, C:0.01, G:0.37, T:0.47
Consensus pattern (16 bp):
GGGGTTTTGAATTTTA
Found at i:1688376 original size:34 final size:34
Alignment explanation
Indices: 1688299--1688388 Score: 105
Period size: 34 Copynumber: 2.7 Consensus size: 34
1688289 AAAAGTTTGA
*
1688299 GATTTTGGA-TTTTGGGGGGTTTTGAATTTTAGG
1 GATTTTGGATTTTTGGGGGGTTTTGAATTTAAGG
* * *
1688332 GGTTTCGGATTTTATGGGGGG-TTTGGATTTAAGG
1 GATTTTGGATTTT-TGGGGGGTTTTGAATTTAAGG
*
1688366 GATTTTGGATTTTT-AGGGGTTTT
1 GATTTTGGATTTTTGGGGGGTTTT
1688389 AAAAACTTAG
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
32 4 0.09
33 11 0.23
34 25 0.53
35 7 0.15
ACGTcount: A:0.14, C:0.01, G:0.37, T:0.48
Consensus pattern (34 bp):
GATTTTGGATTTTTGGGGGGTTTTGAATTTAAGG
Found at i:1688388 original size:17 final size:17
Alignment explanation
Indices: 1688301--1688388 Score: 81
Period size: 17 Copynumber: 5.2 Consensus size: 17
1688291 AAGTTTGAGA
**
1688301 TTTTGGATTTTGGGGGG
1 TTTTGGATTTTTAGGGG
*
1688318 TTTT-GAATTTTAGGGG
1 TTTTGGATTTTTAGGGG
* *
1688334 TTTCGGATTTTATGGGGG
1 TTTTGGATTTT-TAGGGG
* * *
1688352 GTTTGGA-TTTAAGGGA
1 TTTTGGATTTTTAGGGG
1688368 TTTTGGATTTTTAGGGG
1 TTTTGGATTTTTAGGGG
1688385 TTTT
1 TTTT
1688389 AAAAACTTAG
Statistics
Matches: 54, Mismatches: 14, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
16 21 0.39
17 23 0.43
18 10 0.19
ACGTcount: A:0.14, C:0.01, G:0.36, T:0.49
Consensus pattern (17 bp):
TTTTGGATTTTTAGGGG
Found at i:1690326 original size:23 final size:22
Alignment explanation
Indices: 1690278--1690342 Score: 85
Period size: 23 Copynumber: 2.9 Consensus size: 22
1690268 AATCGAATTT
*
1690278 ATGCTCGGAGATCTTAGAAATC
1 ATGCTCGGAGATCTTACAAATC
*
1690300 ATGCTGGGAGATCTTACAGAATC
1 ATGCTCGGAGATCTTACA-AATC
* *
1690323 ATGCCCGAAGATCTTACAAA
1 ATGCTCGGAGATCTTACAAA
1690343 ATCGACTGAG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 18 0.49
23 19 0.51
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (22 bp):
ATGCTCGGAGATCTTACAAATC
Found at i:1690377 original size:133 final size:133
Alignment explanation
Indices: 1690174--1690454 Score: 329
Period size: 133 Copynumber: 2.1 Consensus size: 133
1690164 ATTTATGTTT
* * * *
1690174 GGAGGTCTTACA-AATCATACCCGAAGGTCTTACAGAATCGATTGGAATAATACTGCAAGTTGAA
1 GGAGGTCTTACAGAATCATACCCGAAGATCTTACAAAATCGACTGGAATAATACTGCAAGTTCAA
* * * *
1690238 AAATAAAGAATCAATCGAAAAAACACCGTAAATCGAATTTATG-CTCGGAGATCTTAGAAATCAT
66 AAATAAAGAATCAATCGAAAAAACACCGCAAATCGAATTTATGCCT-GAAAATCTTAAAAATCAT
*
1690302 GCTG
130 GCTC
* * *
1690306 GGAGATCTTACAGAATCATGCCCGAAGATCTTACAAAATCGACT-GAGATAATA-TCGTAAG-TC
1 GGAGGTCTTACAGAATCATACCCGAAGATCTTACAAAATCGACTGGA-ATAATACT-GCAAGTTC
* * * * *
1690368 AAAAGATAAAGAATCGATCGAGATAACACCGCGAATTGAATTTATGCCTGAAAATCTTAAAAATC
64 AAAA-ATAAAGAATCAATCGAAAAAACACCGCAAATCGAATTTATGCCTGAAAATCTTAAAAATC
1690433 ATGCTC
128 ATGCTC
*
1690439 AGAGGTCTTACAGAAT
1 GGAGGTCTTACAGAAT
1690455 TATCCAGAGG
Statistics
Matches: 125, Mismatches: 19, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
132 19 0.15
133 104 0.83
134 2 0.02
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (133 bp):
GGAGGTCTTACAGAATCATACCCGAAGATCTTACAAAATCGACTGGAATAATACTGCAAGTTCAA
AAATAAAGAATCAATCGAAAAAACACCGCAAATCGAATTTATGCCTGAAAATCTTAAAAATCATG
CTC
Found at i:1690447 original size:22 final size:22
Alignment explanation
Indices: 1690422--1690491 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
1690412 TGCCTGAAAA
*
1690422 TCTTAAAAATCATGCTCAGAGG
1 TCTTAAAAATAATGCTCAGAGG
* *
1690444 TCTTACAGAATTAT-C-CAGAGG
1 TCTTA-AAAATAATGCTCAGAGG
*
1690465 TCTTAAAAATAATG-TCCGGAGG
1 TCTTAAAAATAATGCT-CAGAGG
1690487 TCTTA
1 TCTTA
1690492 CAGAATTAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
20 6 0.15
21 11 0.28
22 16 0.41
23 6 0.15
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (22 bp):
TCTTAAAAATAATGCTCAGAGG
Found at i:1690463 original size:21 final size:21
Alignment explanation
Indices: 1690438--1690499 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
1690428 AAATCATGCT
1690438 CAGAGGTCTTACAGAATTATC
1 CAGAGGTCTTACAGAATTATC
* *
1690459 CAGAGGTCTTA-AAAATAATGTC
1 CAGAGGTCTTACAGAAT--TATC
*
1690481 CGGAGGTCTTACAGAATTA
1 CAGAGGTCTTACAGAATTA
1690500 ACTTGGATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
20 4 0.12
21 12 0.36
22 13 0.39
23 4 0.12
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.27
Consensus pattern (21 bp):
CAGAGGTCTTACAGAATTATC
Found at i:1690610 original size:23 final size:23
Alignment explanation
Indices: 1690571--1690630 Score: 68
Period size: 23 Copynumber: 2.7 Consensus size: 23
1690561 TTATGCTCGA
*
1690571 AGGTCTTA-GAAATCATGCCCAG
1 AGGTCTTACAAAATCATGCCCAG
* *
1690593 AGGTCTTACAAAATCATGTCCGG
1 AGGTCTTACAAAATCATGCCCAG
* *
1690616 AGATCTTACAGAATC
1 AGGTCTTACAAAATC
1690631 GACTGGAATA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
22 8 0.25
23 24 0.75
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (23 bp):
AGGTCTTACAAAATCATGCCCAG
Found at i:1690720 original size:133 final size:132
Alignment explanation
Indices: 1690458--1690833 Score: 497
Period size: 133 Copynumber: 2.8 Consensus size: 132
1690448 ACAGAATTAT
* * *
1690458 CCAGAGGTCTTA-AAAATAATGTCCGGAGGTCTTACAGAATTAACTTGG-ATAACACCGTAAGTC
1 CCAGAGGTCTTACAAAATCATGTCCGGAGGTCTTACAGAATTGAC-TGGAATAACACCATAAGTC
* * * * *
1690521 AGAA-ATAAAAAATCAATCGAGATAATACCGTGAATCCAATTTATGCTCGAAGGTCTTAGAAATC
65 AAAAGATAAAAAATCGATCG-GATAATACCGTGAATCAAATTTATGCCCGAAAGTCTTAGAAATC
1690585 ATGC
129 ATGC
* *
1690589 CCAGAGGTCTTACAAAATCATGTCCGGAGATCTTACAGAATCGACTGGAATAACACCATAAGTCA
1 CCAGAGGTCTTACAAAATCATGTCCGGAGGTCTTACAGAATTGACTGGAATAACACCATAAGTCA
* *
1690654 AAAGATAAAAAATCGATCAGGATAATATCGCGAATCAAATTTATGCCCGAAAGTCTTAGAAATCA
66 AAAGATAAAAAATCGATC-GGATAATACCGTGAATCAAATTTATGCCCGAAAGTCTTAGAAATCA
1690719 TGC
130 TGC
* * * * * * *
1690722 CCAAAAGTTTTACAGAATCATGTCCGAAGGTCTTACAGAATTGATTGAAATAACACCATAAGTCA
1 CCAGAGGTCTTACAAAATCATGTCCGGAGGTCTTACAGAATTGACTGGAATAACACCATAAGTCA
* * *
1690787 AAAGATAAAGAATTGATCGGGATAACACCGTGAATCAAATTTATGCC
66 AAAGATAAAAAATCGATC-GGATAATACCGTGAATCAAATTTATGCC
1690834 TGGAGTTCTT
Statistics
Matches: 214, Mismatches: 27, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
131 15 0.07
132 45 0.21
133 153 0.71
134 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (132 bp):
CCAGAGGTCTTACAAAATCATGTCCGGAGGTCTTACAGAATTGACTGGAATAACACCATAAGTCA
AAAGATAAAAAATCGATCGGATAATACCGTGAATCAAATTTATGCCCGAAAGTCTTAGAAATCAT
GC
Found at i:1690757 original size:23 final size:23
Alignment explanation
Indices: 1690696--1690762 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
1690686 AATCAAATTT
*
1690696 ATGCCCGAAAGTCTTAGA-AATC
1 ATGCCCGAAAGTCTTACAGAATC
* *
1690718 ATGCCCAAAAGTTTTACAGAATC
1 ATGCCCGAAAGTCTTACAGAATC
* *
1690741 ATGTCCGAAGGTCTTACAGAAT
1 ATGCCCGAAAGTCTTACAGAAT
1690763 TGATTGAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
22 15 0.41
23 22 0.59
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (23 bp):
ATGCCCGAAAGTCTTACAGAATC
Found at i:1691008 original size:22 final size:23
Alignment explanation
Indices: 1690983--1691043 Score: 70
Period size: 22 Copynumber: 2.7 Consensus size: 23
1690973 AATCAAATTT
1690983 ATGCCTGAAGGTCTTAGA-AATC
1 ATGCCTGAAGGTCTTAGAGAATC
* *
1691005 ATGCCTGAAGGTTTTATAGAATC
1 ATGCCTGAAGGTCTTAGAGAATC
* * *
1691028 ATACCCGGAGGTCTTA
1 ATGCCTGAAGGTCTTA
1691044 CAGATTATGT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 16 0.50
23 16 0.50
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (23 bp):
ATGCCTGAAGGTCTTAGAGAATC
Found at i:1691261 original size:13 final size:15
Alignment explanation
Indices: 1691243--1691274 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1691233 ACTTTAAAAA
1691243 TTTT-AAAT-TTTTT
1 TTTTAAAATATTTTT
1691256 TTTTAAAATATTTTT
1 TTTTAAAATATTTTT
1691271 TTTT
1 TTTT
1691275 CAATCAGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 4 0.24
14 4 0.24
15 9 0.53
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTAAAATATTTTT
Found at i:1691832 original size:65 final size:65
Alignment explanation
Indices: 1691763--1692236 Score: 417
Period size: 65 Copynumber: 7.2 Consensus size: 65
1691753 ACTTTTTTTG
* * * * * *
1691763 AGGCCAAATAAACTTGGTTTAAATTTTATTGAAGGCCAGCTAAACTGGGCTTAAAACTTCATTTA
1 AGGCCAGATAAACTTGGCTTAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTTA
* *
1691828 AGGCCAGATAAACTGGGCTTAAATATCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCA-TTA
1 AGGCCAGATAAACTTGGCTTAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTTA
* * *
1691892 ATGGCCAGATAAAC-TGGACTTAAATGTCATTGTTGGTCAGATAAACTGGGCTTAAAGCTTCA-T
1 A-GGCCAGATAAACTTGG-CTTAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATT
*
1691955 TG
64 TA
** * * * *
1691957 AGGATAAGATAAA-TTGAGTTTAAATCTTCATTTGA-GGCGAGATAAACTGGGTTTAAAGCCTCA
1 AGG-CCAGATAAACTTG-GCTTAAAT-TTCA-TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
*
1692020 TTGA
62 TTTA
* ** * * * * * *
1692024 TGGTGAGATAAACTGGGCTTAAAACTTCATTTATGACCAGATAAACTAGGCTTAAAGTTTCA-TT
1 AGGCCAGATAAACTTGGCTT-AAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTT
1692088 A
65 A
*
1692089 ATGGCCAGATAAAC-TGAGCTTAAATGCTTCATTGATGGCCAGATAAACTGGGCTTAAAACTTCA
1 A-GGCCAGATAAACTTG-GCTTAAAT--TTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
1692153 -TTA
62 TTTA
** *** **
1692156 ATGGTTAGATAAA-TTGGGCTTAAAGTTTCATTGATGATTAGATAAACTAAGCTTAAAGCTTCAT
1 A-GGCCAGATAAACTT-GGCTTAAA-TTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCAT
*
1692220 TGA
63 TTA
*
1692223 TGGCCAGATAAACT
1 AGGCCAGATAAACT
1692237 GGAGTTAAAT
Statistics
Matches: 330, Mismatches: 59, Indels: 38
0.77 0.14 0.09
Matches are distributed among these distances:
64 8 0.02
65 133 0.40
66 119 0.36
67 68 0.21
68 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (65 bp):
AGGCCAGATAAACTTGGCTTAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTCATTTA
Found at i:1692245 original size:33 final size:33
Alignment explanation
Indices: 1691760--1692251 Score: 471
Period size: 33 Copynumber: 15.0 Consensus size: 33
1691750 AAAACTTTTT
* * * * *
1691760 TTGA-GGCCAAATAAACTTGGTTTAAA-TTTTA
1 TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
* * *
1691791 TTGAAGGCCAGCTAAACTGGGCTTAAAACTTCA
1 TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
* *
1691824 TTTAAGGCCAGATAAACTGGGCTTAAA--TATCA
1 TTGATGGCCAGATAAACTGGGCTTAAAGCT-TCA
1691856 TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
1 TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
* *
1691889 TTAATGGCCAGATAAACTGGACTTAAA--TGTCA
1 TTGATGGCCAGATAAACTGGGCTTAAAGCT-TCA
* *
1691921 TTGTTGGTCAGATAAACTGGGCTTAAAGCTTCA
1 TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
** * * * *
1691954 TTGA-GGATAAGATAAATTGAGTTTAAATCTTCA
1 TTGATGG-CCAGATAAACTGGGCTTAAAGCTTCA
* * *
1691987 TTTGA-GGCGAGATAAACTGGGTTTAAAGCCTCA
1 -TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
** *
1692020 TTGATGGTGAGATAAACTGGGCTTAAAACTTCA
1 TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
* * * *
1692053 TTTATGACCAGATAAACTAGGCTTAAAGTTTCA
1 TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
* *
1692086 TTAATGGCCAGATAAACTGAGCTTAAATGCTTCA
1 TTGATGGCCAGATAAACTGGGCTTAAA-GCTTCA
*
1692120 TTGATGGCCAGATAAACTGGGCTTAAAACTTCA
1 TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
* ** * *
1692153 TTAATGGTTAGATAAATTGGGCTTAAAGTTTCA
1 TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
*** **
1692186 TTGATGATTAGATAAACTAAGCTTAAAGCTTCA
1 TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
1692219 TTGATGGCCAGATAAACTGGAG-TTAAATGCTTC
1 TTGATGGCCAGATAAACTGG-GCTTAAA-GCTTC
1692252 TGAGCTTAAA
Statistics
Matches: 383, Mismatches: 64, Indels: 25
0.81 0.14 0.05
Matches are distributed among these distances:
31 6 0.02
32 78 0.20
33 255 0.67
34 44 0.11
ACGTcount: A:0.34, C:0.14, G:0.21, T:0.31
Consensus pattern (33 bp):
TTGATGGCCAGATAAACTGGGCTTAAAGCTTCA
Found at i:1692326 original size:32 final size:33
Alignment explanation
Indices: 1692255--1692326 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
1692245 ATGCTTCTGA
*
1692255 GCTTAAAACTTCATTAATGATCAGATAAACTGG
1 GCTTAAAACTTCATTAATGACCAGATAAACTGG
* *
1692288 GCTTAAAACTTCATTTAA-GGCCAGAT-AATTGG
1 GCTTAAAACTTCA-TTAATGACCAGATAAACTGG
1692320 GCTTAAA
1 GCTTAAA
1692327 GTTTTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
32 12 0.34
33 19 0.54
34 4 0.11
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.31
Consensus pattern (33 bp):
GCTTAAAACTTCATTAATGACCAGATAAACTGG
Found at i:1693134 original size:20 final size:20
Alignment explanation
Indices: 1693109--1693148 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
1693099 ATCCATTCAT
*
1693109 TTTTTTTTATACTTCTTTTC
1 TTTTTTTTATACATCTTTTC
*
1693129 TTTTTTTTTTACATCTTTTC
1 TTTTTTTTATACATCTTTTC
1693149 ACTGAGTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTTTTTATACATCTTTTC
Found at i:1700312 original size:16 final size:15
Alignment explanation
Indices: 1700291--1700341 Score: 59
Period size: 14 Copynumber: 3.4 Consensus size: 15
1700281 TTAGGGTTTT
*
1700291 GATTTTAAAGTTTGG
1 GATTTTAAGGTTTGG
*
1700306 AGATTTTATGGTTT-G
1 -GATTTTAAGGTTTGG
1700321 GATTTTAAGGTTTGG
1 GATTTTAAGGTTTGG
*
1700336 GGTTTT
1 GATTTT
1700342 GATTTAAGGG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 12 0.40
15 7 0.23
16 11 0.37
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.51
Consensus pattern (15 bp):
GATTTTAAGGTTTGG
Found at i:1700326 original size:14 final size:14
Alignment explanation
Indices: 1700280--1700335 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
1700270 ATATGGAAGG
* *
1700280 TTTAGGGTTTTGAT
1 TTTAAGGTTTGGAT
*
1700294 TTTAAAGTTTGGAGAT
1 TTTAAGGTTT-G-GAT
*
1700310 TTTATGGTTTGGAT
1 TTTAAGGTTTGGAT
1700324 TTTAAGGTTTGG
1 TTTAAGGTTTGG
1700336 GGTTTTGATT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
14 22 0.65
15 1 0.03
16 11 0.32
ACGTcount: A:0.20, C:0.00, G:0.29, T:0.52
Consensus pattern (14 bp):
TTTAAGGTTTGGAT
Found at i:1700345 original size:21 final size:21
Alignment explanation
Indices: 1700315--1700356 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1700305 GAGATTTTAT
1700315 GGTTTGGATTTTAA-GGTTTGG
1 GGTTTGGA-TTTAAGGGTTTGG
*
1700336 GGTTTTGATTTAAGGGTTTGG
1 GGTTTGGATTTAAGGGTTTGG
1700357 ATTTTAGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48
Consensus pattern (21 bp):
GGTTTGGATTTAAGGGTTTGG
Found at i:1700352 original size:14 final size:14
Alignment explanation
Indices: 1700335--1700399 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
1700325 TTAAGGTTTG
1700335 GGGTTTTGATTTAA
1 GGGTTTTGATTTAA
* *
1700349 GGGTTTGGATTTTA
1 GGGTTTTGATTTAA
1700363 GGGATTTTGGATTTAGA
1 GGG-TTTT-GATTTA-A
* *
1700380 GGGTTTAGGTTTAA
1 GGGTTTTGATTTAA
*
1700394 GAGTTT
1 GGGTTT
1700400 AAAAGTTTGG
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
14 21 0.51
15 8 0.20
16 8 0.20
17 4 0.10
ACGTcount: A:0.20, C:0.00, G:0.34, T:0.46
Consensus pattern (14 bp):
GGGTTTTGATTTAA
Found at i:1700361 original size:20 final size:20
Alignment explanation
Indices: 1700324--1700361 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1700314 TGGTTTGGAT
*
1700324 TTTAAGGTTTGGGGTTTTGA
1 TTTAAGGTTTGGGATTTTGA
1700344 TTTAAGGGTTT-GGATTTT
1 TTTAA-GGTTTGGGATTTT
1700362 AGGGATTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.53
Consensus pattern (20 bp):
TTTAAGGTTTGGGATTTTGA
Found at i:1700372 original size:51 final size:51
Alignment explanation
Indices: 1700276--1700415 Score: 130
Period size: 51 Copynumber: 2.7 Consensus size: 51
1700266 TAGGATATGG
*
1700276 AAGGTTTAGGGTTTTGATTTTAAAGTTTGGAGATTTTATGGTTTGGATTTT
1 AAGGTTTAGGGTTTTGATTTTAAAGTTTGGAGATTTTAGGGTTTGGATTTT
* *
1700327 AAGGTTTGGGGTTTTGA-TTTAAGGGTTT-G-GATTTTAGGGATTTTGGA-TTT
1 AAGGTTTAGGGTTTTGATTTTAA-AGTTTGGAGATTTTAGGG--TTTGGATTTT
* *
1700377 AGAGGGTTTA-GGTTTAAGAGTTTAAAAGTTTGG-GATTTT
1 A-A-GGTTTAGGGTTT-TGA-TTTTAAAGTTTGGAGATTTT
1700416 GGATTTTGAG
Statistics
Matches: 73, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
49 9 0.12
50 10 0.14
51 32 0.44
52 7 0.10
53 4 0.05
54 11 0.15
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (51 bp):
AAGGTTTAGGGTTTTGATTTTAAAGTTTGGAGATTTTAGGGTTTGGATTTT
Found at i:1700373 original size:16 final size:16
Alignment explanation
Indices: 1700352--1700500 Score: 81
Period size: 17 Copynumber: 9.2 Consensus size: 16
1700342 GATTTAAGGG
1700352 TTTGGATTTTAGGGAT
1 TTTGGATTTTAGGGAT
*
1700368 TTTGGA-TTTAGAGGGT
1 TTTGGATTTTAG-GGAT
* * *
1700384 TTAGG-TTTAAGAG-T
1 TTTGGATTTTAGGGAT
*** *
1700398 TTAAAAGTTT-GGGAT
1 TTTGGATTTTAGGGAT
*
1700413 TTTGGATTTTGAGGGGT
1 TTTGGATTTT-AGGGAT
* * **
1700430 TTCGAATTTTATGGGGGG
1 TTTGGATTTTA--GGGAT
*
1700448 TTTGGATTTAAGGGAT
1 TTTGGATTTTAGGGAT
1700464 TTTGGATTTTTAGGGAT
1 TTTGGA-TTTTAGGGAT
*
1700481 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGAT
1700498 TTT
1 TTT
1700501 AAAAACTTAG
Statistics
Matches: 100, Mismatches: 24, Indels: 17
0.71 0.17 0.12
Matches are distributed among these distances:
14 6 0.06
15 15 0.15
16 27 0.27
17 40 0.40
18 12 0.12
ACGTcount: A:0.19, C:0.01, G:0.33, T:0.47
Consensus pattern (16 bp):
TTTGGATTTTAGGGAT
Found at i:1700393 original size:45 final size:46
Alignment explanation
Indices: 1700334--1700472 Score: 120
Period size: 45 Copynumber: 2.9 Consensus size: 46
1700324 TTTAAGGTTT
*
1700334 GGGGTTTTGATTTAAGGGTTTGGATTTTAGGGATTTTGGATTTAGA
1 GGGGTTTAGATTTAAGGGTTTGGATTTTAGGGATTTTGGATTTAGA
* * ** * *
1700380 -GGGTTTAGGTTTAAGAGTTTAAAAGTTT-GGGATTTTGGATTTTGA
1 GGGGTTTAGATTTAAGGGTTT-GGATTTTAGGGATTTTGGATTTAGA
* * *
1700425 GGGGTTTCGAATTTTATGGGGGGTTTGGATTTAAGGGATTTTGGATTT
1 GGGGTTTAG-A-TTTA---AGGGTTTGGATTTTAGGGATTTTGGATTT
1700473 TTAGGGATTT
Statistics
Matches: 70, Mismatches: 15, Indels: 11
0.73 0.16 0.11
Matches are distributed among these distances:
45 33 0.47
46 11 0.16
48 4 0.06
50 3 0.04
51 19 0.27
ACGTcount: A:0.20, C:0.01, G:0.35, T:0.45
Consensus pattern (46 bp):
GGGGTTTAGATTTAAGGGTTTGGATTTTAGGGATTTTGGATTTAGA
Found at i:1700500 original size:17 final size:17
Alignment explanation
Indices: 1700412--1700500 Score: 90
Period size: 17 Copynumber: 5.2 Consensus size: 17
1700402 AAGTTTGGGA
*
1700412 TTTTGGATTTTGAGGGG
1 TTTTGGATTTTTAGGGG
* * *
1700429 TTTCGAATTTTATGGGGG
1 TTTTGGATTTT-TAGGGG
* * *
1700447 GTTTGGA-TTTAAGGGA
1 TTTTGGATTTTTAGGGG
*
1700463 TTTTGGATTTTTAGGGA
1 TTTTGGATTTTTAGGGG
1700480 TTTTGGATTTTTAGGGG
1 TTTTGGATTTTTAGGGG
1700497 TTTT
1 TTTT
1700501 AAAAACTTAG
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
16 9 0.16
17 40 0.70
18 8 0.14
ACGTcount: A:0.16, C:0.01, G:0.34, T:0.49
Consensus pattern (17 bp):
TTTTGGATTTTTAGGGG
Found at i:1701953 original size:21 final size:20
Alignment explanation
Indices: 1701910--1701953 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
1701900 CCCTACATTC
* *
1701910 TATTTTTTTGTTTCTCTTTT
1 TATTTTTTTATTTCTATTTT
*
1701930 TATTTTTTTATTTTTATTTAT
1 TATTTTTTTATTTCTATTT-T
1701951 TAT
1 TAT
1701954 AATTAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (20 bp):
TATTTTTTTATTTCTATTTT
Found at i:1703874 original size:14 final size:14
Alignment explanation
Indices: 1703855--1703887 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
1703845 GACTAGTTTG
1703855 TTCTTATTCCATGA
1 TTCTTATTCCATGA
1703869 TTCTTATTCCATGA
1 TTCTTATTCCATGA
1703883 TTCTT
1 TTCTT
1703888 GTTCGAGCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.21, G:0.06, T:0.55
Consensus pattern (14 bp):
TTCTTATTCCATGA
Found at i:1715833 original size:37 final size:37
Alignment explanation
Indices: 1715792--1715868 Score: 120
Period size: 37 Copynumber: 2.1 Consensus size: 37
1715782 ATCCAAACTT
*
1715792 AATCTATATATTTACTATCTGAACTTT-ATCTAAATCA
1 AATCTATATATTTAATATCTGAA-TTTAATCTAAATCA
*
1715829 AATCTATATATTTAATATCTGAATTTAATCTAAATTA
1 AATCTATATATTTAATATCTGAATTTAATCTAAATCA
1715866 AAT
1 AAT
1715869 AAAAAAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 3 0.08
37 34 0.92
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.44
Consensus pattern (37 bp):
AATCTATATATTTAATATCTGAATTTAATCTAAATCA
Found at i:1716166 original size:26 final size:26
Alignment explanation
Indices: 1716110--1716170 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 26
1716100 TTTCTTTTAA
1716110 TTTTGATTCTATCAAATACAATACCC
1 TTTTGATTCTATCAAATACAATACCC
* * *
1716136 ATTTGATTCTATCAAAT-CTATAACTC
1 TTTTGATTCTATCAAATACAAT-ACCC
1716162 TTTTGATTC
1 TTTTGATTC
1716171 AACTAAAAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 3 0.10
26 27 0.90
ACGTcount: A:0.31, C:0.20, G:0.05, T:0.44
Consensus pattern (26 bp):
TTTTGATTCTATCAAATACAATACCC
Found at i:1720092 original size:8 final size:7
Alignment explanation
Indices: 1720081--1720123 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
1720071 AAATTTATAA
1720081 AAATTTAT
1 AAATTT-T
*
1720089 AAATTTC
1 AAATTTT
*
1720096 AAATTTC
1 AAATTTT
1720103 AAATTTT
1 AAATTTT
*
1720110 AAATTTC
1 AAATTTT
1720117 AAATTTT
1 AAATTTT
1720124 TTAAAATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
7 25 0.81
8 6 0.19
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (7 bp):
AAATTTT
Found at i:1720101 original size:7 final size:7
Alignment explanation
Indices: 1720089--1720122 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
1720079 AAAAATTTAT
1720089 AAATTTC
1 AAATTTC
1720096 AAATTTC
1 AAATTTC
*
1720103 AAATTTT
1 AAATTTC
1720110 AAATTTC
1 AAATTTC
1720117 AAATTT
1 AAATTT
1720123 TTTAAAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (7 bp):
AAATTTC
Found at i:1720114 original size:21 final size:22
Alignment explanation
Indices: 1720081--1720122 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
1720071 AAATTTATAA
1720081 AAATTTATAAATTTCAAATTTC
1 AAATTTATAAATTTCAAATTTC
1720103 AAATTT-TAAATTTCAAATTT
1 AAATTTATAAATTTCAAATTT
1720123 TTTAAAATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (22 bp):
AAATTTATAAATTTCAAATTTC
Found at i:1721149 original size:22 final size:24
Alignment explanation
Indices: 1721122--1721165 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
1721112 CATAAGTAAA
*
1721122 TTTATTTAAAT-ATAT-TAAAATT
1 TTTATTAAAATAATATATAAAATT
1721144 TTTATTAAAATAATATATAAAA
1 TTTATTAAAATAATATATAAAA
1721166 AATAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 4 0.21
24 5 0.26
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTATTAAAATAATATATAAAATT
Found at i:1721468 original size:2 final size:2
Alignment explanation
Indices: 1721461--1721486 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1721451 TTATTCATAA
1721461 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1721487 GTATGCTGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1721732 original size:44 final size:44
Alignment explanation
Indices: 1721669--1721756 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
1721659 TATGATAATA
* *
1721669 ATTGATAGGATATCATCTGCTTCCCCGTGTGACTCTTGGTGTGT
1 ATTGATAGGATATCATCTGCTTCCCCATGTGACTCTTGGCGTGT
1721713 ATTGATAGGATATCATCTGCTTCCCCATGTGACTCTTGGCGTGT
1 ATTGATAGGATATCATCTGCTTCCCCATGTGACTCTTGGCGTGT
1721757 TGCAGTACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.17, C:0.22, G:0.24, T:0.38
Consensus pattern (44 bp):
ATTGATAGGATATCATCTGCTTCCCCATGTGACTCTTGGCGTGT
Found at i:1723706 original size:23 final size:23
Alignment explanation
Indices: 1723663--1723706 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
1723653 ATTTTCTCAG
* *
1723663 TTTTTTATTTTATTTTTATTAAA
1 TTTTTTATTTTATTATAATTAAA
1723686 TTTTTT-TTTTATATATAATTA
1 TTTTTTATTTTAT-TATAATTA
1723707 CTAGTTAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTTTTATTTTATTATAATTAAA
Found at i:1724749 original size:4 final size:4
Alignment explanation
Indices: 1724740--1724766 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
1724730 TTTAGAGCAA
1724740 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATA
1724767 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:1732697 original size:2 final size:2
Alignment explanation
Indices: 1732678--1732724 Score: 58
Period size: 2 Copynumber: 23.5 Consensus size: 2
1732668 AGTACTTCTC
* * * *
1732678 AT AT AA AT AT AA AT AT AT AT AT GT GT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1732720 AT AT A
1 AT AT A
1732725 CAAACACACA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (2 bp):
AT
Found at i:1734657 original size:18 final size:19
Alignment explanation
Indices: 1734634--1734674 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
1734624 TCGAATTATA
1734634 TATATATATTTT-AATTTT
1 TATATATATTTTAAATTTT
*
1734652 TATATATCTTTTAAATTTT
1 TATATATATTTTAAATTTT
1734671 TATA
1 TATA
1734675 AAATAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TATATATATTTTAAATTTT
Found at i:1740744 original size:22 final size:21
Alignment explanation
Indices: 1740692--1740745 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
1740682 ATAAATAATT
1740692 TTTTATAAA-TAAATCAATCC
1 TTTTATAAATTAAATCAATCC
* *
1740712 TTTTTTAAATTGAATCAATCC
1 TTTTATAAATTAAATCAATCC
1740733 ATTTTATAAATTA
1 -TTTTATAAATTA
1740746 TATTTTATCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 8 0.29
21 10 0.36
22 10 0.36
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.46
Consensus pattern (21 bp):
TTTTATAAATTAAATCAATCC
Found at i:1740868 original size:27 final size:27
Alignment explanation
Indices: 1740837--1740890 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
1740827 ATAATCGATC
*
1740837 AATTCATATTTTTTTTAAATTAACTTA
1 AATTCAAATTTTTTTTAAATTAACTTA
1740864 AATTCAAATTTTTTTTAAATTAACTTA
1 AATTCAAATTTTTTTTAAATTAACTTA
1740891 CAACCAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (27 bp):
AATTCAAATTTTTTTTAAATTAACTTA
Found at i:1740898 original size:27 final size:27
Alignment explanation
Indices: 1740844--1740900 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
1740834 ATCAATTCAT
*
1740844 ATTTTTTTTAAATTAACTTAAATTCAA
1 ATTTTTTTTAAATTAACTTAAATCCAA
1740871 ATTTTTTTTAAATTAACTTACAA-CCAA
1 ATTTTTTTTAAATTAACTTA-AATCCAA
1740898 ATT
1 ATT
1740901 AATCGATCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.40, C:0.11, G:0.00, T:0.49
Consensus pattern (27 bp):
ATTTTTTTTAAATTAACTTAAATCCAA
Found at i:1740913 original size:13 final size:13
Alignment explanation
Indices: 1740895--1740939 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
1740885 AACTTACAAC
*
1740895 CAAATTAATCGAT
1 CAAATTAATCAAT
1740908 CAAATTAATCAAT
1 CAAATTAATCAAT
1740921 C-AATTAA--AAT
1 CAAATTAATCAAT
1740931 CAAATTAAT
1 CAAATTAAT
1740940 TGAAGCTGAC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
10 4 0.14
11 6 0.21
12 6 0.21
13 13 0.45
ACGTcount: A:0.53, C:0.13, G:0.02, T:0.31
Consensus pattern (13 bp):
CAAATTAATCAAT
Found at i:1757010 original size:17 final size:16
Alignment explanation
Indices: 1756968--1757011 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
1756958 AATATATTCA
*
1756968 AATAAATTTTAAATTT
1 AATATATTTTAAATTT
*
1756984 AATTTAATTTTAAAATTT
1 AATAT-ATTTT-AAATTT
1757002 AATATATTTT
1 AATATATTTT
1757012 TATTATTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
16 3 0.13
17 10 0.43
18 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
AATATATTTTAAATTT
Found at i:1757012 original size:18 final size:18
Alignment explanation
Indices: 1756968--1757013 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
1756958 AATATATTCA
1756968 AATA-AATTTT-AAATTT
1 AATATAATTTTAAAATTT
*
1756984 AATTTAATTTTAAAATTT
1 AATATAATTTTAAAATTT
*
1757002 AATATATTTTTA
1 AATATAATTTTA
1757014 TTATTTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 3 0.12
17 6 0.24
18 16 0.64
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AATATAATTTTAAAATTT
Found at i:1757150 original size:32 final size:31
Alignment explanation
Indices: 1757091--1757151 Score: 77
Period size: 31 Copynumber: 1.9 Consensus size: 31
1757081 ATATTTTTAA
** * *
1757091 TATTTAAAAAATAATATTTATACTTTTCATT
1 TATTTAAAAAATAATATCCACAATTTTCATT
1757122 TATTTAAAAAATAATAATCCACAATTTTCA
1 TATTTAAAAAATAAT-ATCCACAATTTTCA
1757152 AGTTAAAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 15 0.60
32 10 0.40
ACGTcount: A:0.46, C:0.10, G:0.00, T:0.44
Consensus pattern (31 bp):
TATTTAAAAAATAATATCCACAATTTTCATT
Found at i:1765140 original size:17 final size:15
Alignment explanation
Indices: 1765110--1765143 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
1765100 ATAAGGGAAC
1765110 AAAAGAAAGAAAGAA
1 AAAAGAAAGAAAGAA
1765125 AAAAGAAAAGGAAAGAA
1 AAAAG-AAA-GAAAGAA
1765142 AA
1 AA
1765144 GAAAGTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 3 0.18
17 9 0.53
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (15 bp):
AAAAGAAAGAAAGAA
Found at i:1766084 original size:2 final size:2
Alignment explanation
Indices: 1766077--1766105 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1766067 AATCTCATCA
1766077 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1766106 GCAAATCATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.