Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167998.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_254, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 42172
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29
Found at i:5831 original size:26 final size:26
Alignment explanation
Indices: 5802--5854 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5792 CCAGTCCGAT
5802 CTTACAATGGGAATGAACTCCGTATG
1 CTTACAATGGGAATGAACTCCGTATG
* *
5828 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACAATGGGAATGAACTCCGTATG
5854 C
1 C
5855 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACAATGGGAATGAACTCCGTATG
Found at i:7516 original size:17 final size:16
Alignment explanation
Indices: 7496--7549 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
7486 TTTTTAGGAC
*
7496 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
*
7513 TTTGAATTTTAGGGGAT
1 TTTGGATTTTAGGGG-T
7530 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
7547 TTT
1 TTT
7550 AAAAACTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 4 0.12
17 19 0.59
18 9 0.28
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:9309 original size:87 final size:88
Alignment explanation
Indices: 9162--9391 Score: 338
Period size: 88 Copynumber: 2.6 Consensus size: 88
9152 AAAAATAATA
* * * *
9162 AATCGATCGAGATAACACACACGAATCAAAATTATGCCCGGAGGTCTTACAAAATAGACTGGGAT
1 AATCGATCGGGATAACAC-CGCGAATCAAAATTATGTCCGGAGGTCTTACAAAATCGACTGGGAT
*
9227 AACATCGT-AATCAAAAGATAAAG
65 AACATCATAAATCAAAAGATAAAG
*
9250 AATCGATCGGGATAACACCGCGAATCAAAATTATGTCCGAAGGTCTTACAAAATCGACTGGGATA
1 AATCGATCGGGATAACACCGCGAATCAAAATTATGTCCGGAGGTCTTACAAAATCGACTGGGATA
*
9315 ACATCATAAATCAAAAGATAAGG
66 ACATCATAAATCAAAAGATAAAG
* * * *
9338 AATCGATCGGGATAACATCGCGAATCGAAATTACGTTCGGAGGTCTTA-AAAATC
1 AATCGATCGGGATAACACCGCGAATCAAAATTATGTCCGGAGGTCTTACAAAATC
9392 ATACCTGAAG
Statistics
Matches: 129, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
87 55 0.43
88 74 0.57
ACGTcount: A:0.41, C:0.18, G:0.20, T:0.21
Consensus pattern (88 bp):
AATCGATCGGGATAACACCGCGAATCAAAATTATGTCCGGAGGTCTTACAAAATCGACTGGGATA
ACATCATAAATCAAAAGATAAAG
Found at i:9426 original size:23 final size:22
Alignment explanation
Indices: 9375--9437 Score: 72
Period size: 23 Copynumber: 2.8 Consensus size: 22
9365 AAATTACGTT
*
9375 CGGAGGTCTTAAAAATCATACC
1 CGGAGGTCTTAAGAATCATACC
* * *
9397 TGAAGGTCTTATAGAATCATGCC
1 CGGAGGTCTTA-AGAATCATACC
9420 CGGAGGTCTTACAGAATC
1 CGGAGGTCTTA-AGAATC
9438 GACTGGAATA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
22 9 0.27
23 24 0.73
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (22 bp):
CGGAGGTCTTAAGAATCATACC
Found at i:9536 original size:133 final size:129
Alignment explanation
Indices: 9290--9657 Score: 407
Period size: 133 Copynumber: 2.8 Consensus size: 129
9280 TTATGTCCGA
* * *
9290 AGGTCTTACAAAATCGACTGGGATAACATCATAAATCAAAAGATAAGGAATCGATCGGGATAACA
1 AGGTCTTACAGAATCGACT-GGATAACATCGTAAGTC-AAAGATAAGGAATCGATCGGGATAAC-
* ** * *
9355 TCGCGAATCGAAATTACGTTCGGAGGTCTTAAAAATCATACCTGAAGGTCTTATAGAATCATGCC
63 TC-CGAATCGAAATTATGCCCGGAGGTCTTAAAAATCATACCTAAAGGTCTTACAGAATCATGCC
9420 CGG
127 CGG
*
9423 AGGTCTTACAGAATCGACTGGAATAAAATCGTAAGTCGAAAGATAAGGAATCGATCGGGATAACG
1 AGGTCTTACAGAATCGACTGG-ATAACATCGTAAGTC-AAAGATAAGGAATCGATCGGGATAAC-
* * * *
9488 TCACGAATCAAAATTATGCCCGGAGGTCTTAGAAATCGT-GCTCAAAGGTCTTACAGAATCATGC
63 TC-CGAATCGAAATTATGCCCGGAGGTCTTAAAAATCATACCT-AAAGGTCTTACAGAATCATGC
9552 CCGG
126 CCGG
* * * * * * *
9556 AGGTCTTACAGAATTGACTCGGGTAACATCGCAAGTCAGAA-ATAAAGAATCGACCGGGACAACA
1 AGGTCTTACAGAATCGACT-GGATAACATCGTAAGTCA-AAGATAAGGAATCGATCGGGATAACT
* *
9620 CCGCATATCGAAATTATGCCCAGAGGTCTTACAAATCA
64 CCG-A-ATCGAAATTATGCCCGGAGGTCTTAAAAATCA
9658 CAAAATCTTT
Statistics
Matches: 201, Mismatches: 28, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
130 2 0.01
131 2 0.01
132 52 0.26
133 143 0.71
134 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (129 bp):
AGGTCTTACAGAATCGACTGGATAACATCGTAAGTCAAAGATAAGGAATCGATCGGGATAACTCC
GAATCGAAATTATGCCCGGAGGTCTTAAAAATCATACCTAAAGGTCTTACAGAATCATGCCCGG
Found at i:9559 original size:23 final size:23
Alignment explanation
Indices: 9503--9569 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
9493 AATCAAAATT
*
9503 ATGCCCGGAGGTCTTAGA-AATC
1 ATGCCCGGAGGTCTTACAGAATC
* * **
9525 GTGCTCAAAGGTCTTACAGAATC
1 ATGCCCGGAGGTCTTACAGAATC
9548 ATGCCCGGAGGTCTTACAGAAT
1 ATGCCCGGAGGTCTTACAGAAT
9570 TGACTCGGGT
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
22 13 0.37
23 22 0.63
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (23 bp):
ATGCCCGGAGGTCTTACAGAATC
Found at i:10419 original size:33 final size:33
Alignment explanation
Indices: 10340--10584 Score: 230
Period size: 33 Copynumber: 7.5 Consensus size: 33
10330 TTGGGGCTAA
* * * *
10340 ATAAACTTGGCTTAAAT-TT-AATGAAGGCTAG
1 ATAAACTGGGCTTAAATCTTCATTTAAGGCCAG
* * *
10371 CTAAACTGGGCTTAAATCTTCATTTAAAGCCAA
1 ATAAACTGGGCTTAAATCTTCATTTAAGGCCAG
* * * * * * *
10404 ATAAACTAGGTTTAAAACCTCATTGATGGCTAG
1 ATAAACTGGGCTTAAATCTTCATTTAAGGCCAG
* * *
10437 ATGAACTAGGCTTAAAGCTTCA-TTAATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTTAA-GGCCAG
* * * *
10470 ATAAACTAGGCTTAAAT-ATCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTTAAGGCCAG
*
10502 ATAAACTGGGCTTAAATCTTCATTTGAGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTTAAGGCCAG
*
10535 ATAAACTGGGCTTAAAACTTCA-TTAATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTTAA-GGCCAG
10568 ATAAACTGGGCTTAAAT
1 ATAAACTGGGCTTAAAT
10585 TTTATCTTAT
Statistics
Matches: 171, Mismatches: 37, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
31 15 0.09
32 32 0.19
33 124 0.73
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.29
Consensus pattern (33 bp):
ATAAACTGGGCTTAAATCTTCATTTAAGGCCAG
Found at i:10452 original size:66 final size:65
Alignment explanation
Indices: 10372--10584 Score: 286
Period size: 66 Copynumber: 3.2 Consensus size: 65
10362 GAAGGCTAGC
* * * *
10372 TAAACTGGGCTTAAATCTTCATTTAAAGCCAAATAAACTAGGTTTAAAACCTCATTGATGGCTAG
1 TAAACTGGGCTTAAATCTTCATTTAAGGCCAGATAAACTAGGCTTAAAA-CTCATTGATGGCCAG
10437 A
65 A
* * *
10438 TGAACTAGGCTTAAAGCTTCA-TTAATGGCCAGATAAACTAGGCTTAAATA-TCATTGATGGCCA
1 TAAACTGGGCTTAAATCTTCATTTAA-GGCCAGATAAACTAGGCTTAAA-ACTCATTGATGGCCA
10501 GA
64 GA
* * *
10503 TAAACTGGGCTTAAATCTTCATTTGAGGCCAGATAAACTGGGCTTAAAACTTCATTAATGGCCAG
1 TAAACTGGGCTTAAATCTTCATTTAAGGCCAGATAAACTAGGCTTAAAAC-TCATTGATGGCCAG
10568 A
65 A
10569 TAAACTGGGCTTAAAT
1 TAAACTGGGCTTAAAT
10585 TTTATCTTAT
Statistics
Matches: 129, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
64 1 0.01
65 57 0.44
66 70 0.54
67 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (65 bp):
TAAACTGGGCTTAAATCTTCATTTAAGGCCAGATAAACTAGGCTTAAAACTCATTGATGGCCAGA
Found at i:10525 original size:98 final size:99
Alignment explanation
Indices: 10372--10584 Score: 277
Period size: 98 Copynumber: 2.2 Consensus size: 99
10362 GAAGGCTAGC
* * * *
10372 TAAACTGGGCTTAAATCTTCATTTAAAGCCAAATAAACTAGGTTTAAAACCTCA-TTGATGGCTA
1 TAAACTGGGCTTAAATCATCATTGAAAGCCAAATAAACTAGGCTTAAAACCTCATTTGA-GGCCA
* *
10436 GATGAACTAGGCTTAAAGCTTCATTAATGGCCAGA
65 GATAAACTAGGCTTAAAACTTCATTAATGGCCAGA
* ** * * * *
10471 TAAACTAGGCTTAAAT-ATCATTGATGGCCAGATAAACTGGGCTTAAATCTTCATTTGAGGCCAG
1 TAAACTGGGCTTAAATCATCATTGAAAGCCAAATAAACTAGGCTTAAAACCTCATTTGAGGCCAG
*
10535 ATAAACTGGGCTTAAAACTTCATTAATGGCCAGA
66 ATAAACTAGGCTTAAAACTTCATTAATGGCCAGA
10569 TAAACTGGGCTTAAAT
1 TAAACTGGGCTTAAAT
10585 TTTATCTTAT
Statistics
Matches: 98, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
98 79 0.81
99 19 0.19
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (99 bp):
TAAACTGGGCTTAAATCATCATTGAAAGCCAAATAAACTAGGCTTAAAACCTCATTTGAGGCCAG
ATAAACTAGGCTTAAAACTTCATTAATGGCCAGA
Found at i:17994 original size:17 final size:16
Alignment explanation
Indices: 17974--18027 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
17964 TTTTTAGGAC
*
17974 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
*
17991 TTTGAATTTTAGGGGAT
1 TTTGGATTTTAGGGG-T
18008 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
18025 TTT
1 TTT
18028 AAAACTTAGG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 4 0.12
17 19 0.59
18 9 0.28
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:19432 original size:15 final size:13
Alignment explanation
Indices: 19398--19431 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
19388 ATTTTTTTGC
19398 TATTTTTTGTA-T
1 TATTTTTTGTATT
19410 TATTTTTTGGTATT
1 TATTTTTT-GTATT
19424 TATTTTTT
1 TATTTTTT
19432 TTGTATTTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 8 0.40
13 3 0.15
14 9 0.45
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (13 bp):
TATTTTTTGTATT
Found at i:19437 original size:15 final size:14
Alignment explanation
Indices: 19400--19439 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
19390 TTTTTTGCTA
19400 TTTTTTGTA-TTAT
1 TTTTTTGTATTTAT
*
19413 TTTTTGGTATTTATT
1 TTTTTTGTATTTA-T
19428 TTTTTTGTATTT
1 TTTTTTGTATTT
19440 GTATAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 8 0.35
14 3 0.13
15 12 0.52
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.78
Consensus pattern (14 bp):
TTTTTTGTATTTAT
Found at i:19677 original size:26 final size:26
Alignment explanation
Indices: 19648--19700 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
19638 TCGGTCCGAT
19648 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
19674 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
19700 C
1 C
19701 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:20558 original size:26 final size:27
Alignment explanation
Indices: 20529--20582 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
20519 CTGGTCCGAT
20529 CTTACACTGGGAATGAACTCC-GTATG
1 CTTACACTGGGAATGAACTCCTGTATG
*
20555 CTTAGACTGGGAATGAACTCCTGTATG
1 CTTACACTGGGAATGAACTCCTGTATG
20582 C
1 C
20583 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 20 0.77
27 6 0.23
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (27 bp):
CTTACACTGGGAATGAACTCCTGTATG
Found at i:21451 original size:26 final size:25
Alignment explanation
Indices: 21415--21466 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
21405 TCGGTCCGAT
21415 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTC-GTATG
*
21441 CTTAGACTGGGAATGAACTCGTATG
1 CTTACACTGGGAATGAACTCGTATG
21466 C
1 C
21467 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTACACTGGGAATGAACTCGTATG
Found at i:23238 original size:26 final size:26
Alignment explanation
Indices: 23202--23254 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23192 CCAGTCTGAT
23202 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
23228 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
23254 C
1 C
23255 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:23881 original size:890 final size:891
Alignment explanation
Indices: 19486--25815 Score: 8782
Period size: 891 Copynumber: 7.2 Consensus size: 891
19476 GATGTCAACA
**
19486 CACATCATGTGCTGCACACCCCCCG-CCCCCTCAATCGTC-GAACCCCCAAATGCCACCGGTCAG
1 CACATCATGTGC-GCACACCCCCCGCCCCCCT-AATCGTCGGAA-CCCC-AATGCCGTCGGTCAG
* **
19549 GTTCTCCGATGATGCTCC-GAAATGGTGCCCCGGGC-AAAAAAAATGTGGCACCAGCACATGCCC
62 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCC
19612 GAGCCCAGCATGTGCACCCGCAACCCTCGGT-C---C-GATCTTACACTGGGAATGAACTCCGTA
127 GAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTA
19672 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
192 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
19737 GCCGGCCAGAGGGGCAGGATGCACAAGC-GGGGATCGTCGGGT-CCCCCTGCGTGCT-TCGATCC
257 GCCGG-CAGAGGGGCAGGATGCACAAGCTGGGGATCGTCGGGTCCCCCCTGTGTGCTGCCGATCC
*
19799 TGCTGCCGCAACCCTC-GTCCGATC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
321 TGCTGCCGCAACCCTCAGT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
19862 CCGACGAAACGA---GCGGGCGGGCACTACGTCGGCCAGAGA-GCGGGATGCGCAAGCCGTGGAT
385 CCGACGAAACGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
19923 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
450 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
19988 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
515 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
20053 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAAAATTTTTTCAGAAGG
580 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG
20117 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
645 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAAAAAAATTCA
20182 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
709 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
20247 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
774 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
20312 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
839 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
*
20365 CACATCATGTGCGCACACCCCCCGCCCCCC-AATCGTCGGAACCCCAATGTCGTCGGTCAGGTTC
1 CACATCATGTGCGCACACCCCCCGCCCCCCTAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* *
20429 TCCGACGATGCTCCGGTGATGGTGCCTC-GGCGAAAAAAAATGT-GCACCAGCACATGCCCGAGC
66 TCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGC
* ** *
20492 CCAGCATGTGCACCCGTAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCT
131 CCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGCT
*
20557 TAGACTGGGAATGAACTCCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
196 TAGACTGGGAATGAACTCC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
20622 GGCCAGAGGGGCAGGATGCGCAAG-TCGGGGATCGACGGGT-CCCCCTCTGTGCTGCCGATCCTA
260 GG-CAGAGGGGCAGGATGCACAAGCT-GGGGATCGTCGGGTCCCCCCTGTGTGCTGCCGATCCTG
* * *
20685 CTG--TCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG-ACTTCGTATGCCTAAGCCAACC
323 CTGCCGCAACCCTCAGTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
20747 GACGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG-GGATC
387 GACGAAACGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
*
20811 GATAGGGTGGTAGGTGGGTTTA-GCACATCTTCATATTTTCTACCATGCCAATGCCATTTTTATG
451 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCCATGCCAATGCCATTTTTATG
20875 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTCGT
515 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC-TCGT
* *
20940 TTTCTATTTTTCATGATTTTTAAAACTTTTTACCGGTTCGAGGATTTTTTAAAAATTTTTTCAGA
579 TTTCTATTTTTCACGATTTTTAAAACTTTTTA-CGGTTCG-GGATTTTTTTAAAATTTTTTCAG-
21005 AAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
641 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAA
21069 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
705 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
21134 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
770 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
21199 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
835 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
21256 CACATCATGTGCGCACA---CCC-CCCCCC-AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
1 CACATCATGTGCGCACACCCCCCGCCCCCCTAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
21316 TCCGACGATGCTCCGG-GATGGTG-CCCGGGCGAAAAAAAAATGTGGCACCAGCACATGCCCGAG
66 TCCGACGATGCTCCGGCGATGGTGCCCCGGGCG-AAAAAAAATGTGGCACCAGCACATGCCCGAG
* * *
21379 CCCAGCATGTGCACCCGCAACCCTC-GT-CGGTCCGATCTTACACTGGGAATGAACTCTGTATGC
130 CCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGC
*
21442 TTAGACTGGGAATGAACT-CGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCC
195 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
21506 GGCCAGAGGGGCAGGATGCACAAGC-GGGGATCGAT-GGGTCCCCCCTGTGTG-TG-CGATCCTG
260 GG-CAGAGGGGCAGGATGCACAAGCTGGGGATCG-TCGGGTCCCCCCTGTGTGCTGCCGATCCTG
* * *
21567 CT-ACGCAACCCT-GGT-TGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
323 CTGCCGCAACCCTCAGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
21629 ACGAAACGAGCGGGCGGGCGGGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
388 ACGAAACGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
21693 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
452 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
21758 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
517 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
*
21823 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAG
582 CTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAG
21888 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCAC-AAAAAATTCAGCT
647 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCT
21952 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
712 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
22017 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
777 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
22082 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
842 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * ** *
22132 CACATCATATGCGCACACCCCCCGCCCCCCCCAATCCCCAGAACCCCAATGTCGCCGATCAAGTT
1 CACATCATGTGCGCACACCCCCCG-CCCCCCTAATCGTCGGAACCCCAA--T-GCCG-TC--G--
* * * * * * *
22197 CTCTGGCAATGCTCCGATGATGCTTCGGCGATGGTGCCCCGGGCGAAAAAAGAAATGTGACACGA
57 GTCAGG---TTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCG-AAAAA-AAATGTGGCACCA
* * * * * * * * *
22262 GCACATGCTCGAACCCTGCATGTGCACCCACATCCCTTGGTTCAGTTTGATCTTACACTAGGAAT
117 GCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAAT
** * * * *
22327 GAACTCAATATGCTTAGACTGGGAATGAATTCTGTATGCCTAAGTCAACCCACAAAATGAGCGTG
182 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * *
22392 CGGGTGCTTAGCCAGCCAGAGGGGCAGGATGCCCAAGCTGGGGATCGGTTGGGTACCCCCTGCGT
247 CGGGCGCTCAGCC-GGCAGAGGGGCAGGATGCACAAGCTGGGGATC-GTCGGGTCCCCCCTGTGT
* * ** * * * *
22457 GCTGCCAATCTTGCTGCTACAACCATCAGTCCGGTTTGATCTAAGACTGCGAATGAACTCCGTAT
310 GCTGCCGATCCTGCTGCCGCAACCCTCAGT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* ** * *
22522 GCCTATGCCAACCGACGAAACGAGCGAGCAAGCGGGCACTACGCCGGCCAGAGAGACTGGATGCG
374 GCCTAAGCCAACCGACGAAACGAGCG-GCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCG
** * **
22587 CAAATCGTGGATCGAT-GGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCTGTGCCAAT
438 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
22651 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT-GCA
503 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
*
22715 AGACGA-TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAAT
568 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAAT
*
22779 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCAC
633 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCAC
22844 AAAAAAATTCAGCTAAAAACTCGAAGTGTACA-GATTTTGTGACCATTTGAAAAAAGTGTCCCCA
698 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
22908 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
763 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
22973 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
828 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
23037 CATATCATGTGCGCACACCCCCCGCCCCCCTAATCATCAGAACCCCAATGCCG-CGGTCAGGTTC
1 CACATCATGTGCGCACACCCCCCGCCCCCCTAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *
23101 T-CGACGATGCTCCGGCGATGGTGCCCCGAGTGAAAAAAAATGCGGCACCAGCACATGCCCGATC
66 TCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGC
* *
23165 CCAACATATGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGCT
131 CCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGCT
* * *
23230 TAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCATGAAACGAGCGTGCGGGTGCTCAGCCG
196 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * *
23295 GCAGAGGGGCAGGATGCACAAGCTAGGGATCGGCCGGGTCCCCCCCTGTGTGCTACCGATCCTGC
261 GCAGAGGGGCAGGATGCACAAGCTGGGGATC-GTCGGGT-CCCCCCTGTGTGCTGCCGATCCTGC
* * *
23360 TGCCACAACCCTCAGTGCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTG
324 TGCCGCAACCCTCAGT-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
23425 ACGAAACGAGCTGGCGGGCGGGCATTATGCTGGCCAGAGAGGCGGGATGCGCAAGCTGTGGATCG
388 ACGAAACGAGC-GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
* *
23490 ATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGC
452 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
* * *
23555 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATATGAAGTCTCATGGCAAGACGACTCGTTCT
517 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * *
23620 CTATTTTTAACAATTTTCAAAACTTTTTACGGTTCGGGGTTTTTTT-AAATTTTTTCAGAAGGAG
582 CTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAG
*
23684 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCT
647 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCT
23749 -AAAACTCGAAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGT-CCCATTTCAGACACTTT
712 AAAAACTCG-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
23811 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
776 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
23876 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-CCCATTG
841 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
23926 CACATCATGTGCGCACACCCCCCCCCGCCCCTAATTGCCGGAACCCCAATG-CGTCGGTCAGGTT
1 CACATCATGTGCGCACACCCCCCGCC-CCCCTAATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
**
23990 CTCCGACGATGCTCC-GCGATGGTGCCCCGGGCGAAAAAAAATGCAGCACCAGCACATG-CCGAG
65 CTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAG
* * *
24053 CCCAGCATGTGCACCCGCAACCCTCAGTTCGGTCTGATCTTACACTGGGAATGAACTCCGTATGC
130 CCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGC
*
24118 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCC
195 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
** * * * *
24183 AACCAGAGGGGCAGCATGCGCAAG-TAGGGGATCGGCCGGGTCCCCCCACGTG-G-TGCCGATCC
260 -GGCAGAGGGGCAGGATGCACAAGCT-GGGGATC-GTCGGGTCCCCCC-TGTGTGCTGCCGATCC
* * * * * *
24245 TGCTACCGCAACCCTCGGTTTGGTCTGAGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
321 TGCTGCCGCAACCCTCAG-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
24310 TCGATGAAACGAGCGG-GTGGACGGGCACTACGTCGGCCAGAGAGGCGGGACGCGCAAGCCGTGG
385 CCGACGAAACGAGCGGCG-GG-CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
*
24374 ATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
448 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
* *
24439 TGGCTTGTAAATTCAGACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACGACTCG
513 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * *
24504 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTTTAAATTTTTTTAGAA
578 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA
* * * * *
24569 AGAGTTTTGGCCCCACACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATCCAGAAAAAAATT
643 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATT
*
24634 TAGCTAAAAACTCGAAGTGTA-ACGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGAC
707 CAGCTAAAAACTCGAAGTGTACA-GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
24697 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTC
771 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-TTC
*
24762 TTGAGGTTTGATGAGGGATAGGGGG-CAATATAA---CC-AG---C--CA-CCATCG
835 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
24808 CACATCATGTGCGCACA-----TG--CGCC-AAGC-T-GGAA-CCTAATGCCGTC-GT-AGGTT-
1 CACATCATGTGCGCACACCCCCCGCCCCCCTAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* *
24859 T-C--CGA---T-----GATGGTG-CTCGGG-GAAAAATAA--TGGCACCAG-A-AT--CC-AG-
66 TCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGC
*
24903 -CAGCATGT-CA----AAACCCTCGTGTCCA----G-TC-TACA-T--G-AT---CT---TA---
131 CCAGCATGTGCACCCGCAACCCTCG-GTCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGC
* *
24943 --A-ACTGGGAAATGAACTTCGATATGCCTAAGTCAACCCACGAAACGA-CGTG-AGGCGACTCA
195 TTAGACTGGG-AATGAACTCCG-TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG-CTCA
* * * * * ** *
25003 GCC--CAGAAGGGGCAGGATGCGCAAGCCGGGGATCATCTGGTTCCCCCTACGTGCT-ACGATCC
257 GCCGGCAG-AGGGGCAGGATGCACAAGCTGGGGATCGTCGGGTCCCCCCTGTGTGCTGCCGATCC
* *
25065 T--TTCTTGCAACCCTCAGTC-GT-TGA-C-TAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
321 TGCTGC-CGCAACCCTCAGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * **
25124 -CGATGAAA-G-GCGGC-GGCGGGCATTA-GCCGGCCAGAAGAGACAGGAT--GCAAGCTTTGGA
385 CCGACGAAACGAGCGGCGGGCGGGCACTACGCCGGCCAG-AGAGGCGGGATGCGCAAGCCGTGGA
* *
25182 TCGATAGGGT-GTAGGTGGGTTTA-GCACATCTTCATATTT-TGGCAAGCCAATGCCATTTTTAT
449 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* * *
25244 GGCCTGTAAATTCATAGAAATGGTCTCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
514 GGCTTGTAAATTCATA-CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* * * * * *
25309 TTTTTTATTTTTCACGATTTTTGAAACATTTTACGGTTCAGGATTTTTTTAAAATTTTTGCAAAA
578 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA
* * * * * * *
25374 AGAGTCTTGGCCCCAAACTTCGTAGATGTTATCCTTTTTTTTTTGTTGGCATGCACAAAAAAATT
643 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATT
* * * *
25439 CAGCTAAAAACTCGAAGTGTACAGGATTTTTTTACCATTTGAAAAAAGTGTTCCCATTTTAGACA
707 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
25504 CTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTC
772 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
25568 GAGGTTTGATGAGGGATA-AGGTCCAATATAAGGGCCAAATACCAGCACCCATCA
837 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * * * *
25622 CACATTATGGGCGCACACCCCCC-CGCCCCTCAATCGTCAGAGCCCCAATGCCGCCGATAAGGTT
1 CACATCATGTGCGCACACCCCCCGCCCCCCT-AATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
* * *
25686 CTCCGACGATGCTCCGGCGATGGTGCCCCGGGCTAAAAAAAATGTGACACCAACACATGCCCGAG
65 CTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAG
* * * * *
25751 CCCAGCATGTGCACTCGTAACCCTCGGTCTAGTCTGAACTTACACTGGGAATGAACTTCGTATGC
130 CCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGC
25816 CTAAGTCAAC
Statistics
Matches: 4920, Mismatches: 345, Indels: 378
0.87 0.06 0.07
Matches are distributed among these distances:
803 2 0.00
804 65 0.01
805 228 0.05
806 72 0.01
807 22 0.00
808 9 0.00
809 16 0.00
810 2 0.00
811 5 0.00
812 1 0.00
813 10 0.00
814 52 0.01
815 1 0.00
816 3 0.00
817 2 0.00
818 3 0.00
819 11 0.00
820 23 0.00
821 25 0.01
822 12 0.00
823 23 0.00
824 28 0.01
825 10 0.00
826 1 0.00
827 5 0.00
828 3 0.00
829 1 0.00
831 5 0.00
834 3 0.00
835 1 0.00
837 1 0.00
838 4 0.00
839 9 0.00
840 6 0.00
841 7 0.00
843 14 0.00
844 4 0.00
845 2 0.00
847 4 0.00
848 10 0.00
850 10 0.00
851 4 0.00
852 2 0.00
853 1 0.00
854 11 0.00
855 8 0.00
856 8 0.00
857 5 0.00
858 8 0.00
859 1 0.00
860 4 0.00
861 1 0.00
862 1 0.00
863 1 0.00
864 2 0.00
865 3 0.00
867 3 0.00
868 1 0.00
869 5 0.00
870 10 0.00
871 8 0.00
873 2 0.00
874 3 0.00
876 286 0.06
877 55 0.01
878 70 0.01
879 27 0.01
880 85 0.02
881 220 0.04
882 138 0.03
883 81 0.02
884 106 0.02
885 7 0.00
886 79 0.02
887 214 0.04
888 414 0.08
889 492 0.10
890 404 0.08
891 514 0.10
892 105 0.02
893 16 0.00
894 7 0.00
895 18 0.00
896 43 0.01
897 3 0.00
898 47 0.01
899 64 0.01
900 9 0.00
901 19 0.00
902 3 0.00
903 8 0.00
904 27 0.01
905 305 0.06
906 41 0.01
907 173 0.04
908 33 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
CACATCATGTGCGCACACCCCCCGCCCCCCTAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
TCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGC
CCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTACACTGGGAATGAACTCCGTATGCT
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCAGAGGGGCAGGATGCACAAGCTGGGGATCGTCGGGTCCCCCCTGTGTGCTGCCGATCCTGCTG
CCGCAACCCTCAGTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
Found at i:24127 original size:26 final size:26
Alignment explanation
Indices: 24091--24143 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24081 TCGGTCTGAT
24091 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
24117 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
24143 C
1 C
24144 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:28369 original size:902 final size:884
Alignment explanation
Indices: 26223--28435 Score: 2579
Period size: 890 Copynumber: 2.5 Consensus size: 884
26213 ATCTTACACT
* * * * * * * *
26223 GGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAG--TGTACGGGCACTCAGTCGGCCA
1 GGGAATGAACTCCGTATGCTTAAGTAAACCCACAAAACGAGCATG-A-GAGCGCTCAGCCAGCCA
* * * *
26286 GAA-GTGCAGGATGCACAAGTCGGGGATCGGTTGGGTCCCCCCTAGCGTGCTGTCAATCCTGCTA
64 -AAGGGGTAGGATGCACAAGCCGGGGATCGGATGGGTCCCCCCTA-CGTGCTGTCAATCCTGCTA
* * * *
26350 CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCAAT
127 CCGCAA-CCTC-GTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
26415 AAAACGAACGGGCGGGTGGGCACTAAGCCTGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
190 AAAACGAGCGGGCAGGCGGGCACTAAGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* *
26480 AGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCCT
255 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTATGGCTT
*
26545 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTA
319 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTT-
* ** * **
26610 ATTTTTCATGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTTAAATTTTTTCAGGAGTTTTGG
383 ATTTTTCACGATTTTCAAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTGAAGGAGTTTTGG
* *
26675 CCCCAAACTTAGTAGACGAGATCCTTTTATTTTTGTTGGCATGCACAAGAAAATTCAGCTAAAAA
448 CCCCAAACTTAGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
26740 CTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATAGC
513 CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATAGC
* *
26805 TACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
578 TACTCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
26870 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCAGGTGTGCACGCCC
643 GAGGGATAGGGCGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-GTGTG--CGCCC
* * * * *
26935 CCCACCCCCCAATTGCCGAAACCCCAACGCTGCCGGTCAGGTTCTCCGGCAATGCTTCGGCGATA
705 CACACCCCCCAATGGCCGAAACCCCAACGCCGCCGGTCAGGTTCTCCGACAATGCTTCGACGATA
* * *
27000 GTGCCCTGAGCGAAAAAAAAATATGGCACCAGCACATGCTCGAGCCCAGCATGTGAACCTACAAC
770 GTGCCCTGAACGAAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGAACCTACAAC
* *
27065 CCTCGGTCTAATTCGATCTTACTCAGGGAATGAACTCCGTATGCTTAGAC
835 CCTCGGTCTAATGCGATCTTACACAGGGAATGAACTCCGTATGCTTAGAC
* * * * *
27115 GGGAATGAACTCCGTATGCTTAAGTCAACCCACAAAACGAGCCTGAGGGTGCTCAGCCAGCCAGA
1 GGGAATGAACTCCGTATGCTTAAGTAAACCCACAAAACGAGCATGAGAGCGCTCAGCCAGCCAAA
* * * * * * * * *
27180 GGGGTAGGATGCACAAACCGAGGATC-GATCGGGTCCCGCCTGCGTGTTATCGATCTTGCTGCCG
66 GGGGTAGGATGCACAAGCCGGGGATCGGAT-GGGTCCCCCCTACGTGCTGTCAATCCTGCTACCG
* * * *
27244 CAACCTTCGGTCTGGCCCGATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACAAA
130 CAACC-TCGTTC-AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
* * *
27309 ACGAGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGC-GGATGCGCAAGCCGTGGATCGATAGG
193 ACGAGCGGGCAGGCGGGCACTAAGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
*
27373 GTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTGTATGGCTTGTA
258 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT-TATGGCTTGTA
*
27438 AATTCATACAATGGTCCCTTAACCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
322 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTT-TATT
* * * *
27503 TTTCACAATTTTCAAAACTTTTTAC-GATTTGGGATTTTTTAAAAAAATTTTTAGAAGGATTTTT
386 TTTCACGATTTTCAAAACTTTTTACAG-TTCGAGATTTTTT---AAAATTTTT-GAAGGAGTTTT
* * * *
27567 GGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG-ATTGCACAAAAAAATTCAGC-AA
446 GGCCCCAAACTTAGTAGACGAGATCCTTGTATTTTTGTTGGCA-TGCACAAAAAAATTCAGCTAA
* * *
27630 AGAACTCGAAGTGTACAGGATTTTTTGGCCATTTG-AAAAAGTGTCCCCA-TTCAGACACTTTAA
510 A-AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAA
* * * *
27693 TGGCTACTCG-AG-TAACCTGTAAAATCTCAAAATGCTCTTTAAAGGGGGTGTGGGTTTCTTGAA
574 TAGCTACTCGCAGCAAACCTGTAAAATCTC-AAATGCTCTTT-AAGGGGGTGTGAG-TTCTCG-A
* *
27756 GGTTTGAATGAGGGATAGAGGACGCAAATATATGTGCGCAAGTTACGCAGC-CCCATC-CACATC
635 GGTTTG-ATGAGGGATAG-GG-CGCAAATATAAGGGC-CAAG-TAC-CAGCACCCATCGCACATC
* * * * ** *
27819 A-T-TG-G-CGCACA-CCCCC-ATCGGTCGAAA-CCCAATGACCGTCGGTCAGGTTCTTTGACGA
694 AGTGTGCGCCCCACACCCCCCAAT-GGCCGAAACCCCAACG-CCGCCGGTCAGGTTCTCCGACAA
* * * *
27877 TGCTTCGATGATGGTGGCCTTAACGCAAAAAAAAATACGGCACCAGCACAGTGCCCGAGCCCAGC
757 TGCTTCGACGATAGTGCCCTGAACG-AAAAAAAAATACGGCACCAGCACA-TGCCCGAGCCCAGC
* * * * *
27942 ATGTG-CCCTCGCAATCTTC-GTCCGGTAATGC-ATCTTACACTA-GGAATGAAACTTCGTATCG
820 ATGTGAACCT-ACAACCCTCGGT-C--TAATGCGATCTTACAC-AGGGAATG-AACTCCGTAT-G
28003 CTTAGAC
878 CTTAGAC
* * *
28010 TGGGAATGAAACTCCGTAATGC-TAAGTGAAACCCACAAAACGAGCATGCGAGCGCTTAGGCCGG
1 -GGGAATG-AACTCCGT-ATGCTTAAGT-AAACCCACAAAACGAGCATGAGAGCGCTCA-GCCAG
* * * *
28074 CCAAAGGGGTAGGAATGCGCAAGCCGGGGATCGGCTGGGTCTCCCCCTATGTGCGGTCAATCCTG
61 CCAAAGGGGTAGG-ATGCACAAGCCGGGGATCGGATGGGTC-CCCCCTACGTGCTGTCAATCCTG
** *
28139 CTATTGCAACACTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
124 CTACCGCAAC-CTC-GTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * *
28204 GACAAAAGGGGTGGGCAGGCAGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGTATC
187 GACAAAACGAGCGGGCAGGCGGGCACTAAGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* * *
28269 GATAGGGTGGTAGGTGGGTTTAGGAAAATCTTCATATTTCTGGCATGCCAATGCCATTTTCATGG
252 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT-ATGG
*
28334 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATTTGAAGTTTCATGGCAAGACGACTCATTT
316 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCA-TT
* ** * *
28399 TTTAATTTTCACGATTTTTGAAACATTTTATAGTTCG
380 TTTATTTTTCACGATTTTCAAAACTTTTTACAGTTCG
28436 GGATAGGGGG
Statistics
Matches: 1123, Mismatches: 148, Indels: 90
0.83 0.11 0.07
Matches are distributed among these distances:
889 12 0.01
890 242 0.22
891 149 0.13
892 140 0.12
893 45 0.04
894 115 0.10
895 21 0.02
896 10 0.01
897 24 0.02
898 39 0.03
899 25 0.02
900 23 0.02
901 105 0.09
902 168 0.15
903 5 0.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (884 bp):
GGGAATGAACTCCGTATGCTTAAGTAAACCCACAAAACGAGCATGAGAGCGCTCAGCCAGCCAAA
GGGGTAGGATGCACAAGCCGGGGATCGGATGGGTCCCCCCTACGTGCTGTCAATCCTGCTACCGC
AACCTCGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACG
AGCGGGCAGGCGGGCACTAAGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTATTTTTCA
CGATTTTCAAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTGAAGGAGTTTTGGCCCCAAAC
TTAGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATAGCTACTCGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGCGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAGTGTGCGCCCCACACCCCCCA
ATGGCCGAAACCCCAACGCCGCCGGTCAGGTTCTCCGACAATGCTTCGACGATAGTGCCCTGAAC
GAAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGAACCTACAACCCTCGGTCTAA
TGCGATCTTACACAGGGAATGAACTCCGTATGCTTAGAC
Found at i:30440 original size:26 final size:26
Alignment explanation
Indices: 30411--30463 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
30401 CTGGTCCGAT
*
30411 CTTACACTGGGAATGAACTCCGCATG
1 CTTACACTGAGAATGAACTCCGCATG
* *
30437 CTTAGACTGAGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGCATG
30463 C
1 C
30464 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCGCATG
Found at i:32436 original size:886 final size:884
Alignment explanation
Indices: 28545--33824 Score: 6971
Period size: 884 Copynumber: 5.9 Consensus size: 884
28535 TCCGGTGATG
* * * *
28545 CTCCGACGATGGTGCCCTG-G--GAAAAAAATGCGACATCAGCACATGCCCGAGCCCAGCATGTG
1 CTCCGACGATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * *
28607 CACCCGTAACCCTCGGTCCGATCCGATCTTACATTGGGAATGAAGTCCGTATGCTTAGACT-AGG
66 CACCTGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGA-G
* *** ** * ** * *
28671 AATGAACTCTGTATGCCTAAGTCAACCCGTAAAAAAAACGTGCGGGCATTCAGTCGACCAGAGGG
130 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
** * * * * * *
28736 GCAGGATGCATAAGCCGGGGATCGGCTGGGTCCACCCCTGCGTGTTGCAAATCCTGGTACTACAA
195 GCAGGATGCGCAAGCCGGGGATCGACCGGGTCC-CCCCTGCGTGCTGCCAATCCTGCTACCACAA
* *
28801 CCCTCAGTCTAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
259 CCCTCAGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
28866 AACGGGCGGGCGGACACTATGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTG
324 AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
28931 GTAGGTGGGTTTAGGCAAATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
389 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
28996 TAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
454 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** *
29061 CACGATTTTCAAAACTTTTTATAGTTCAGGATTTTTGTAAAA---TTTAGAAGGAGTTTTGGCCC
519 CACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTAGAAGGAGTTTTGGCCC
* ** *
29123 CAAACTTGGAAGATGTGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTC
584 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
29188 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
649 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
29253 TAGTAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
714 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
* * *
29318 GGATAGGGGGCCAATATAAGGGCCAATTACCAGCACCCATTGCATATCATGTGCGCACACCCCCC
779 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * ** *
29383 GCCCCCCCAATCGTCAGAATCCCAATGCCGCCGATCAGGTT
844 GCCCCCCCAATCGTCGGAACCCCAATGCGGTTGGTCAGGTT
* ** *
29424 CTCCGATGATGCTCCAGCGATGGTGCCCCGAGCGAAAAAAAATATGGCACCTGCACATGCCCGAG
1 CTCC------G----A-CGATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACATGCCCGAG
* * * * * * * * *
29489 GCCTGCATGTGCACCCGCAACCCTCGATCTGATACAATTTTACACTGGGAATGAACTCTGTATGC
55 CCCAGCATGTGCACCTGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGC
* * * *
29554 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAACGTGCCGGCGCTCAGCC
120 TTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** ** *
29619 GGCCAGAGGGGCAGGATGCACAA-CTTGGGGATCGGCTAGGTCCCCCCTTGCGTGCTATCGATCC
185 GGCCAGAGGGGCAGGATGCGCAAGC-CGGGGATCGACCGGGTCCCCCC-TGCGTGCTGCCAATCC
* * ** * * *
29683 TACTACCACAACCCTCCATTC-ACTATGATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCA
248 TGCTACCACAACCCT-CAGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * *
29747 ACCGATGAAACGAGCGGCCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
312 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
29812 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCCATACCAATGCCATTTTTA
377 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
* *
29877 TGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTTATGGCAAGACGACTCG
442 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
** *
29942 TTTTCTATTTTTCGTGATTTTTAAAACTTTTTACGGTTTCA-AATTTTTTTAAAATTTTTTCAGA
507 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGG-TTCAGGATTTTTTTAAAATTTTTT-AGA
* *
30006 AGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGTACAAAAAAAT
570 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
30071 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGCGACCATTTGAAAAAAGTGTTCCTATTTCAGAC
635 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * * * * *
30136 GCTTCAATGGCTATTGGTAGCAAACCTGTAAAATCTCAAATTCTCTTTAAAGGGGTGTGAGTTCA
700 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
30201 TGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAACATG
765 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *****
30266 TGCGCAAACCCCCCGCCCCCCCAATTGTCGGAACCTCAATGCACCCAGTCAGGTT
830 TGCGCACACCCCCCGCCCCCCCAATCGTCGGAACCCCAATGCGGTTGGTCAGGTT
* * * * * *
30321 CT-CGGCGATGGTGCCTCGGGC-AAAAAAAATGTGGCACCAGCACATGCTCGAGCTCAGCATGTG
1 CTCCGACGATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
30384 CA-CTCGCAACCCTCGATCTGGTCCGATCTTACACTGGGAATGAACTCCGCATGCTTAGACTGAG
66 CACCT-GCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGAG
*
30448 AATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
130 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * ** * * ** ** **
30513 GTAGGATGTGCAAGCCAGGGATCGACTAGGTCCACCCTTCCGTGCTGCTGATCCTGCTGTCGTAA
195 GCAGGATGCGCAAGCCGGGGATCGACCGGGTCC-CCCCTGCGTGCTGCCAATCCTGCTACCACAA
* **
30578 CCCTCAGTCTGGTCTAATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATT
259 CCCTCAGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * *
30643 AGCGGGCGGGCGTGCACTACGTCGGCCAAAGAGGCGGGATGCACAAGCAGTGGATCGATAGGGTG
324 AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
30708 GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCCTTTTTATGGCTTGTAAAT
389 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
30773 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
454 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * *
30838 CATGATTTTTGAAACTTTTTACGGTTCTGGATTTTTTAAAAATTTTTTTAGAAGGATTTTTGGCC
519 CACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAA-TTTTTTAGAAGGAGTTTTGGCC
* * * * *
30903 CCAAACTTGGTAGACGTGATTCTTGAATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAAT
583 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
30968 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
648 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
31033 CTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTAGATGA
713 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
* *
31098 GGGATAGAGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
778 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * *
31163 CG-CCCCCCAATCGTCGGAACCACAATGCCGCCGGTTAGGTTCCCCGATGATG
843 CGCCCCCCCAATCGTCGGAACCCCAAT---G-CGGTT-GG-T---C-A-GGTT
* * * *
31215 CTCCGACGATGGTGCCCC-AGGCAAAAAAAAATACGGCACCAGCACATGGCCTAGCCCAGCAGGT
1 CTCCGACGATGGTGCCCCGA-GCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
31279 GCA-CTCGCAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCTGCATGCTTAGATTGG
65 GCACCT-GCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGA
* * * *
31343 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGGTCAGTCGGCCAGAGG
129 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * ** *** * *
31408 GGCAGCATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTATGTGCTGGTGATCCTGTTGCCACAA
194 GGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCCTGCGTGCTGCCAATCCTGCTACCACAA
* * *
31473 CCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCATCCGACGAAACG
259 CCCTCAGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * * *
31538 AGTGGGCGGGCGGGCACTACGCCGACCAGAGAGGCAGGATGCACAAGCCATGGATCGATAGGGTG
324 AGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
31603 GTAGGTGGGTTTAGGCATATCTTCATATTTCAGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
389 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
31668 TCATACAATGGTCCATTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
454 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * **
31733 CATGATTTTTGAAACTTTTTACAGTTTGGGATTTTTTTAAAACTTTTTTAGAAGGAGTTTTGGCC
519 CACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAA-TTTTTTAGAAGGAGTTTTGGCC
* *
31798 CCAAACTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCAC-AAAAAATTCAACTAAAAACT
583 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
31862 CGAAGTGTAC-AGCAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCT
648 CGAAGTGTACAAG-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
** *
31926 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCATGTGCGTTCTTGAGGTTTGATG
712 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
* * *
31991 AGGGATAGGGGGCCAACATAAGGGCCAGGTACTAGCACCCATCGCACATCATGTGCGCACACCAT
777 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC--
*
32056 CCCCGCCCCCCCAATCGTCGGAACCCCAATGCTGTTGGTCAGGTT
840 CCCCGCCCCCCCAATCGTCGGAACCCCAATGCGGTTGGTCAGGTT
*
32101 CTCCGACGATGGTGCCTCGAGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
1 CTCCGACGATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
32166 CACCTGCAACCCTCGGTCTGGTCCAATCTCACACTGGGAATGAACTCTGTATGCTTAGACTCAGA
66 CACCTGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGAGA
* * * *
32231 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATGCGGGTGCTTAGCCGGCCAGAGGGG
131 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
** * * * * * *
32296 CAGGATGCGCAAGCTAGGGATCGGCCGGGTCCCCCCTACATGCTGCCAATCTTGCTGCCGCAACC
196 CAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCCTGCGTGCTGCCAATCCTGCTACCACAACC
* * *
32361 CTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAG
261 CTCAGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
*
32426 CGGGCGGGCGGGCACTACGTTC-GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
326 CGGGCGGGCGGGCACTACG-CCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
32490 TAGGTGGGTTTAGGCACATCCTCATATTTATGCCATGCCAATGCCATTTTTATGGCTTGTAAATT
390 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
32555 CGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTC
455 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * * * * *
32620 ACGATTTTTGAAACTTTTTATGGTTCCGAATTTTTTTAAACTTTTTTTTGAAGAAATTTTGGCTC
520 ACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAA-ATTTTTTAGAAGGAGTTTTGGCCC
** *
32685 CAAACTTGGTAGATGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
584 CAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
32750 GAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
649 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
32815 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
714 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
* * * * *
32880 GCATAGAGGGCCAATATAAGGGCCAACTACCAGCACCCATTGCACATCATGTACGCACA-CCCCC
779 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* ** * * * *
32944 -CACCCCCAATCACCAGAACCCTAATGCCACCGGTTAGGTTCTCCGACGATG
844 GCCCCCCCAATCGTCGGAACCCCAATG----CGGTT-GG---T-C-A-GGTT
* ** * *
32995 CTCCGACGATGGTGCCCCGGGTGAAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTG
1 CTCCGACGATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * ** *
33060 CACATGCCCAAGCC-CAG-C--GTCTGATCTTACACTGGGAATGAACTCCGTGTGCCCAGACTGG
66 CACCTG--CAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGA
* * * *
33121 GAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGC-ATCAGCCGGCCAGAGG
129 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * *
33185 GGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCACTGCATGCTGCCAATCCTACTACTATA
194 GGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC-CTGCGTGCTGCCAATCCTGCTACCACA
* * * *
33250 ACCCTCAGTCTGATCTGATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAC
258 ACCCTCAGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
33315 GAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGACGCGCAAGCCGTGGATCGATAGGGT
323 GAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
*
33380 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGATGCCAATGCCATTTTTATGGCTTGTAAA
388 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
33445 TTCGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAAGACTCGTTTTCTATTTT
453 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * *
33510 TCACAATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAAATTTTTTAGAAGGAGTTTTGG-C
518 TCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTAGAAGGAGTTTTGGCC
* * * * *
33574 CCAAACTCGGTAGACATGATCCTTGTATTTTTTTTGGCATGCGCAAAAAAATTTAGCTGAAAACT
583 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
33639 TGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAAACACTTTAATGGCTA
648 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
** *
33704 CTCTCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCATGGTTTGATG
713 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA-GGTTTGATG
*
33768 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCG
777 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
33825 TAAGCCAAAG
Statistics
Matches: 3877, Mismatches: 455, Indels: 127
0.87 0.10 0.03
Matches are distributed among these distances:
879 4 0.00
883 51 0.01
884 716 0.18
885 25 0.01
886 558 0.14
887 201 0.05
888 6 0.00
889 3 0.00
890 240 0.06
891 69 0.02
892 384 0.10
893 463 0.12
894 275 0.07
895 379 0.10
896 194 0.05
897 309 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
CTCCGACGATGGTGCCCCGAGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CACCTGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGAGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
CAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCCTGCGTGCTGCCAATCCTGCTACCACAACC
CTCAGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
CGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTAGAAGGAGTTTTGGCCCCA
AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC
CCCCCCAATCGTCGGAACCCCAATGCGGTTGGTCAGGTT
Found at i:38609 original size:25 final size:26
Alignment explanation
Indices: 38581--38632 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
38571 CTGGTCCGAT
38581 CTTACACTGG-AATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
*
38606 CTTAGACTGGAAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
38632 C
1 C
38633 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTACACTGGAAATGAACTCCGTATG
Found at i:39516 original size:26 final size:26
Alignment explanation
Indices: 39478--39530 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
39468 TCTGATCGAT
39478 CTTACACTGGGAATCAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
* * *
39504 CTTAGACTTGGAATGAACTCCGTATG
1 CTTACACTGGGAATCAACTCCGTATG
39530 C
1 C
39531 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCGTATG
Found at i:39914 original size:897 final size:887
Alignment explanation
Indices: 37824--41414 Score: 4533
Period size: 894 Copynumber: 4.1 Consensus size: 887
37814 GCCCGTGACA
* * * * *
37824 CCTGCGTGTTGTCGATCCTACTGTCGTAACCCTCCGTCCGGTCCGATCTTAGACTGGGAATGAAC
1 CCTGCGTGCTGTCAATCCTACT-ACGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAATGAAC
* * * * *
37889 TCCGTATGCCTCAGCCAACCGACGAAACGAGCGGGCGGGTGGGTACTACATTGGCCAGAGAGGCG
64 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC-GTGACCAGAGAGGCG
*
37954 GGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACC-
128 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCA
*
38018 TAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTAAAGCCTTCATGTGAAGTT
193 T-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
* * * * **
38083 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACAGTTTGGGA-TTT
257 TCATGGCAAGACGACTAGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTT
* *
38147 TTTAAAATTTTTTAGAACGAGTTTTGGCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGG
322 TTTAAAATTTTTTAGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
38212 GATGCACAAAAACATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAAT
387 CATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
*
38277 G-CCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
452 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
38341 GAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
517 G-GGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
38406 CCATCGCACATCATGTGTGCAGACCCCCACGCCCCCCCAATCACCAGAACCCCAATGCCGCCGGT
581 CCATCGCACATCATGTGCGCACACCCCCCCG-CCCCCCAATCACCAGAA-CCCAATGCCGCCGGT
* * * ** *
38471 CAGGTTCTCTGACAATGCTC-GAACGATGGTGCCCCTGGCGAAAAAAAAATGTGGCACCAGCAAA
644 CAGGTTCTCCGACGATGCTCTG-ACGATGGTGCCCCGGGCG-AAAAAAAATACGGCACCAGCACA
*
38535 TG-TCCAAGCCCAGCATGTGCACCTGCAACCCTCGGTCTGGTCCGATCTTACACTGGAATGAACT
707 TGCT-CAAGCCCAGCATGTGCACCTGCAACCCTCGGTCTGGTCCGATCTTACACTGGAATCAACT
* *
38599 CCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACT-ACCGTGCGGG
771 CCGTATGCTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAA-TGAGCGTGCGGA
* * * * * * * *
38663 CGTTGAGCTGGCTAGAGGGGTAGGATGTGCAAGTCGGGGATTGATCGGGTCCCC
834 CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * * * *
38717 CCTTGCGTGCTGCCAATCCTGCTATTGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATGAA
1 CC-TGCGTGCTGTCAATCCTACTA-CGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAA
* * * *
38782 CTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGGCCGGCGGGAACTACGTCAGCCAGAGAGGC
63 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTGA-CCAGAGAGGC
* * * *
38847 GAGATGCACATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC
127 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACC
*
38912 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCATGTGAAGTT
192 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTT
38977 TCATGGCAAGACGACTCA-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTT
257 TCATGGCAAGACGACT-AGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTT
* *
39041 TTTTAAAAATTTTTTCAGAAGGAGTTTTGGTCCCACACTTGGTAGACGTGATCCTTGTATTTTTT
321 TTTT-AAAATTTTTT-AGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
39106 TTGGCATGCACAAACAA-GTTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACAATTTGAAA
383 TTGGCATGCACAAA-AACATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAA
39170 AAAGTGTCCCCATTTCAGACACTTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
447 AAAGTGTCCCCATTTCAGACAC-TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
39235 CTTTAAGTGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
511 CTTTAAG-GGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* ** *
39300 CAGCACCCATTGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCTCAATGCCG
575 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCACCAGAACC-CAATGCCG
* * * *
39365 CCAGTCAGGTTCTCCGACGATGCTCTGATGATGGTGCCCCGGGTGAAAAAAAATATGGCACCAGC
639 CCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGC
* * *
39430 ATATGCTCGAGCCCAGCATGTGCACCTGCAACCCTCGGTCTGAT-CGATCTTACACTGGGAATCA
704 ACATGCTCAAGCCCAGCATGTGCACCTGCAACCCTCGGTCTGGTCCGATCTTACACT-GGAATCA
* *
39494 ACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGTG
768 ACTCCGTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG
* * *
39559 GATGCTCAGCCGGCCTGAGGGGTAGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
832 GACGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * * * *
39615 CCTACATGCTGTCGATCCTACTGCAGCAACCCTCGGTCTCGTCTGATCTTAGACTGGGAATGAAC
1 CCTGCGTGCTGTCAATCCTACTAC-GCAACCCTCGGTC-CGTCCGATCTTAGACTGGGAATGAAC
* * * *
39680 TCTGTATGCCTAAGCCAACCGATGAAACGCGCGGGCGGGCGGGCACTACGCTGACCATAGAGGCG
64 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG-TGACCAGAGAGGCG
* * *
39745 GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCA
128 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCA
*
39810 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTATGTGAAGTTT
193 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* *
39875 CATGGCAAGACGACTAGTTTTTTATTATTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTT
258 CATGGCAAGACGACTAGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTT
* * * *
39940 TTAAAATTTTTTCAGAATG-GTTTTGGCCCCAAACGTGGTAGACATGATCCTTGTATATTTGTTG
323 TTAAAATTTTTT-AGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
*
40004 GCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
386 GCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* *
40069 TGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTA
451 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
40134 AGGGGTGTGAGTTCTTGATGTTTGAAAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-
516 AGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * * *
40198 CCATTGCACATCATGTGTGCACACACCCTCGCCCCCCAATCACCAGAACCGCAATGCCACCGATC
581 CCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCACCAGAACC-CAATGCCGCCGGTC
* * ** * * * * *
40263 AAGTTCTCAGGTGATGCTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGACACCAGCACATGC
645 AGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGC
*
40328 CCAAGCCCAGCATGTGCACCTGCAACCCTCGGTCTGGTCCGA---T---CT----T--A---C--
710 TCAAGCCCAGCATGTGCACCTGCAACCCTCGGTCTGGTCCGATCTTACACTGGAATCAACTCCGT
* *
40376 A--C-T-G---GGAATGAACTCCGTATGCCTAAGTCAACCCATG-AATCGAGCGTGC-GAGCACT
775 ATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT-GAGCGTGCGGA-CGCT
* * * * *
40432 CAGCCAGCCAAAGGGGCAGGATGAGCAAGTCGGGGATCAATCGGGTCCCC
838 CAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* ** * * * * * * *
40482 TCTTTGTG--GTACCATCTTGCTACCGTAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAA
1 CCTGCGTGCTGT-CAATCCTACTA-CGCAACCCTCGGTCCG-TCCGATCTTAGACTGGGAATGAA
** * * *
40545 CTCAATATGCCTGAGCCAACCGATG-AA--A---------C--G--C--CG-G-CCAGAGAGGTG
63 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTGACCAGAGAGGCG
*
40590 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACCA
128 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCA
*
40655 TGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTTAAGCCTTCATGTGAAGTT
193 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCATGTGAAG--
** * * * * * * **
40720 TTTGTTGGCAAGATGACTCGTTCTCTATTTTTCATGATTTTTGAAACCTTTTACGATTTGGGATT
255 TTTCATGGCAAGACGACTAGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATT
* * * * * *
40785 TTTTTTAAATTTTCTTAGAGGGAGTTTTGGCCCAAACTTGGTAGATGTGATCATTTTATTTTTTT
320 TTTTTAAAATTTT-TTAGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
40850 TAGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
384 TGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
* * * *
40915 AGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAAGCTCAAATGCTCTT
449 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * *
40980 TAAGGGGGTGTGAGTTCTCTTGA--TTTGATGAGGGAGAGGAGGCCAATATAAGGGCCAACTACC
514 TAA-GGGGTGTGAG-T-TCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
41043 AGCACCCATCGCACATCTTGTGCGCACA-CCCCCCGCCCTCCAATCTCCAGAATCCCAATGCCGT
576 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCACCAGAA-CCCAATGCCGC
* *
41107 CGGTAAGGTTCTCCGACGATGCTCCTG-CGATGGTGCCCCGGGCGAAAAAAAATACGGTACCAGC
640 CGGTCAGGTTCTCCGACGATGCT-CTGACGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGC
* * * * *
41171 ACATGC-CTGAGCCTAGCATGTGCACCCGCAACCCTTGGTCCGGTCCGATCTTACACTGAGAA-C
704 ACATGCTC-AAGCCCAGCATGTGCACCTGCAACCCTCGGTCTGGTCCGATCTTACACTG-GAATC
* * * *
41234 GAATTCCTTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGC
767 -AACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
* * * *
41299 GGGCGTTCAGCCGGCCAGA-GGGCAGGATGCGCAAGCCGGGGATTGATCGGGTTCCC
831 GGACGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* *
41355 CCTGCGTGCTGCCAATCCTACTATCGCAACCCTCGGTCCAGCCCGATCTTAGACTGGGAA
1 CCTGCGTGCTGTCAATCCTACTA-CGCAACCCTCGGTCC-GTCCGATCTTAGACTGGGAA
41415 CTACGTTGGC
Statistics
Matches: 2361, Mismatches: 264, Indels: 165
0.85 0.09 0.06
Matches are distributed among these distances:
845 110 0.05
846 21 0.01
848 223 0.09
849 176 0.07
850 26 0.01
851 6 0.00
852 2 0.00
854 1 0.00
855 2 0.00
862 1 0.00
865 6 0.00
866 66 0.03
867 89 0.04
869 1 0.00
870 1 0.00
871 2 0.00
872 1 0.00
873 38 0.02
874 90 0.04
875 6 0.00
877 1 0.00
880 1 0.00
882 1 0.00
887 2 0.00
890 1 0.00
892 142 0.06
893 67 0.03
894 330 0.14
895 122 0.05
896 27 0.01
897 315 0.13
898 267 0.11
899 79 0.03
900 138 0.06
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
CCTGCGTGCTGTCAATCCTACTACGCAACCCTCGGTCCGTCCGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTGACCAGAGAGGCGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGC
CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
GGCAAGACGACTAGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTA
AAATTTTTTAGAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAACATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
TGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCCGCCCCCCAATCACCAGAACCCAATGCCGCCGGTCAGGTTC
TCCGACGATGCTCTGACGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACATGCTCAAGC
CCAGCATGTGCACCTGCAACCCTCGGTCTGGTCCGATCTTACACTGGAATCAACTCCGTATGCTT
AGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGACGCTCAGCCGGC
CAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
Found at i:41807 original size:842 final size:841
Alignment explanation
Indices: 37941--42170 Score: 3552
Period size: 842 Copynumber: 4.9 Consensus size: 841
37931 GTACTACATT
* * *
37941 GGCCAGAGAGGCGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGGCGGGATGCGCATGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
38006 CATATTTCTACC-TAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTAAAGCC
66 CATATTTCTGCCAT-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
38070 TTCATGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTA
130 TTCATGTGAAGCTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* ** * * *
38134 CAGTTTGGGA-TTTTTTAAAATTTTTT-AGAACGAGTTTTGG-CCCAAACATGGTAGACGTGATC
195 CGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
** * *
38196 CTTGTATTTTTGTTGGGATGCACAAAAACATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
260 CTTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* * *
38261 ACCATTTGAAAAAAATGCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
325 ACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * *
38326 TCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
390 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA-GTTTGATAAGGGATAGGAGGCCAATATAAGG
* * *
38391 GCCAAGTACCAGCACCCATCGCACATCATGTGTGCAGACCCCCACGCCCCCCCAATCACCAGAAC
454 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CG-CCCCCCAATCTCCAGAAC
* * * * * * *
38456 CCCAATGCCGCCGGTCAGGTTCTCTGACAATGCT-CGAACGATGGTGCCCCTGGCGAAAAAAAAA
517 CGCAATGCCGCCAGTAAGGTTCTCCGACGATGCTCCG-GCGATGGTGCCCCGGGCG-AAAAAAAA
** * * * * *
38520 TGTGGCACCAGCAAATGTCCAAGCCCAGCATGTGCACCTGCAACCCTCGGTCTGGTCCGATCTTA
580 TACGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTA
* * *
38585 CACTGGAATGAAC-TCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGA
645 CACTGG---GAACAACCTTATGCTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCATGA
* * * * * * * * * * *
38649 AACTACCGTGCGGGCGTTGAGCTGGCTAGAGGGGTAGGATGTGCAAGTCGGGGATTGATCGGGTC
706 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTT
* * ** * * *
38714 CCCCCTTGCGTGCTGCCAATCCTGCTATTGCAACCCTCAGTC-C-GATCCAATCTTAGACTGGGA
771 CCCCC-TACGTGCTGCC-ATCCTACTACCGCAACCCTCGGTCACAG-CCCGATCTTAGACTGGGA
38777 A-TGAACTCCGTAC
833 ACT-AA---CGT-C
** *
38790 GCCTAAGCCAACCGACGAAACGAGCGGGCCGGCGGGAACTACGTCAGCCAGAGAGGCGAGAT-GC
1 G-----GCC-A--GA-G--A-G-GCGGG-ATGC--G--C-A--T--GCC-----GTC--GATCG-
* * * * * **** * ** **
38854 ACATGCCGTGGATCGATAGGGTGGTAGGTGGGT-TTAGGCACATCTTC--ATATTTC--TGCCAT
35 ATA-G-GGTGG-TAGGT-GGGT-TTAGGCACATCTT---CATAT-TTCTGCCATGCCAATGCCAT
**** * ** ** ** *
38914 GCCAATGCCATT-TTTATGGCTTGTA-AATTCATACAATGGTCCCTTAATCCTTCATGTGAAG-T
91 TTTTATGGC-TTGTAAAT---TCATACAA-T-GG-------TCCCTTAAGCCTTCATGTGAAGCT
* *
38976 TTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTT
143 TTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTT
* * * *
39041 TTTTAAAAATTTTTTCAGAAGGAGTTTTGGTCCCACACTTGGTAGACGTGATCCTTGTATTTTTT
208 TTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
* * * *
39106 TTGGCATGCACAAACAAGTTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACAATTTGAAAA
272 TTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAA
39171 AAGTGTCCCCATTTCAGACACTTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
337 AAGTGT-CCCATTTCAGACAC-TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
39236 TTTAAGTGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
400 TTTAAGGGGGTGTGAGTTCTTGA-GTTTGATAAGGGATAGGAGGCCAATATAAGGGCCAAGTACC
* * *
39301 AGCACCCATTGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGT-CGGAACCTCAATGCCG
464 AGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCAATC-TCCAGAACCGCAATGCCG
* * ** * * *
39365 CCAGTCAGGTTCTCCGACGATGCTCTGATGATGGTGCCCCGGGTGAAAAAAAATATGGCACCAGC
527 CCAGTAAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATACGACACCAGC
* * * *
39430 ATATGCTCGAGCCCAGCATGTGCACCTGCAACCCTCGGTCTGAT-CGATCTTACACTGGGAATCA
592 ACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAA-CA
* * * * *
39494 ACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGTG
656 A--CCTTATGCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
** * * * *
39559 GATGCTCAGCCGGCCTGAGGGGTAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTACATGC
718 GGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTTCCCCCTACGTGC
* * * * * *
39624 TGTCGATCCTACTGCAGCAACCCTCGGTCTC-GTCTGATCTTAGACTGGGAA-TGAACTCTGTAT
783 TG-CCATCCTACTACCGCAACCCTCGGTCACAGCCCGATCTTAGACTGGGAACT-AA--C-G--T
39687 GCC
841 --C
* ** * * * * ** *
39690 TAAGCCAACCGATGAAACGCGCGGGCGGGCGGGCACTACGCTGACCATAGAGGCGGGATGCGCAA
1 --GGCC-A--GA-G--A-G-GCGGG-ATGC--GCA-T--GCCGTCGATCGA-TAGGG-TG-G-TA
* * * **** ** *** ** ****
39755 GCCATGGATCGATAGGGTGGTAGGT-GGGTTTAGGCACAT-CTTCATATTTTTGCCATGCCAATG
46 G--GTGGGT--TTAGGCACAT-CTTCATATTTCTGC-CATGC--CA-A----TGCCATTTTTATG
* ** ** ** *
39818 CCATT-TTTATGGCTTGTA-AATTCATACAATGGTCCCTTAAGCCTTTATGTGAAG-TTTCATGG
98 GC-TTGTAAAT---TCATACAA-T-GG-------TCCCTTAAGCCTTCATGTGAAGCTTTCATGG
* * * *
39880 CAAGACGACTAGTTTTTTATTATTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAA
150 CAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAA
* * * *
39945 ATTTTTTCAGAATG-GTTTTGGCCCCAAACGTGGTAGACATGATCCTTGTATATTTGTTGGCATG
215 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGACATG
* *
40009 CACAAAAACATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
280 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCC
*
40074 GCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAA-GGG
345 -CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
40138 GTGTGAGTTCTTGATGTTTGAAAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCAT
409 GTGTGAGTTCTTGA-GTTTGATAAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
40202 TGCACATCATGTGTGCACACACCCTCGCCCCCCAATCACCAGAACCGCAATGCCACC-GATCAA-
473 CGCACATCATGTGCGCACAC-CCCCCGCCCCCCAATCTCCAGAACCGCAATGCCGCCAG-T-AAG
* ** * *
40265 GTTCTCAGGTGATGCTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGACACCAGCACATGCCC
535 GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATACGACACCAGCACATGCCC
* *
40330 AAGCCCAGCATGTGCACCTGCAACCCTCGGTCTGGTCCGATC-T----T-------A-C--A--C
600 GAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAACAACCTTATGC
* * * *
40378 -T-G---GGAATGAACTCCGTATGCCTAAGTCAACCCATGAATCGAGCGTGCGAGCACTCAGCCA
665 TTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * ** * * * *
40438 GCCAAAGGGGCAGGATGAGCAAGTCGGGGATCAATCGGG-TCCCCTCTTTGTGGTACCATCTTGC
730 GCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTTCCCC-CTACGTGCTGCCATCCTAC
* ** * *
40502 TACCGTAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCAATATGCCTGAGCCAACCG
794 TACCGCAACCCTCG----G-T-C-A-C--AG-C-CCG-AT---CT---TA-GACTG-G-GAA-C-
*
40567 ATGAAACGCC
835 -T--AACGTC
* * *
40577 GGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGGCGGGATGCGCATGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * *
40642 CTTATTTCTACCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTCCCCTTAAGCC
66 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCC
* ** * * *
40707 TTCATGTGAAGTTTTTGTTGGCAAGATGACTCGTTCTCTATTTTTCATGATTTTTGAAACCTTTT
130 TTCATGTGAAG-CTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* ** * * **
40772 ACGATTTGGGATTTTTTTTAAATTTTCTT-AGAGGGAGTTTTGG-CCCAAACTTGGTAGATGTGA
194 ACGGTTCAGGATTTTTTTAAAATTTT-TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
* * * *
40835 TCATTTTATTTTT-TTTAGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTT
258 TCCTTGTATTTTTGTTGA-CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTT
* *
40899 GTGACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAA
322 GTGACCATTTGAAAAAAGTGTCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
40964 AAGCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTTGA-TTTGATGAGGGAGAGGAGGCCAATA
386 AATCTCAAATGCTCTTTAAGGGGGTGTGAG-T-TCTTGAGTTTGATAAGGGATAGGAGGCCAATA
* * *
41028 TAAGGGCCAACTACCAGCACCCATCGCACATCTTGTGCGCACACCCCCCGCCCTCCAATCTCCAG
449 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCTCCAG
* * *
41093 AATCC-CAATGCCGTCGGTAAGGTTCTCCGACGATGCTCCTGCGATGGTGCCCCGGGCGAAAAAA
514 AA-CCGCAATGCCGCCAGTAAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAA
** * * * *
41157 AATACGGTACCAGCACATGCCTGAGCCTAGCATGTGCACCCGCAACCCTTGGTCCGGTCCGATCT
578 AATACGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCT
*
41222 TACACTGAGAACGAATTCCTTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATG
643 TACACTGGGAAC-AA--CCTTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATG
* *
41287 AAACGAGCGTGCGGGCGTTCAGCCGGCCAGA-GGGCAGGATGCGCAAGCCGGGGATTGATCGGGT
705 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGT
* *
41351 TCCCCCTGCGTGCTGCCAATCCTACTATCGCAACCCTCGGTC-CAGCCCGATCTTAGACTGGGAA
770 TCCCCCTACGTGCTGCC-ATCCTACTACCGCAACCCTCGGTCACAGCCCGATCTTAGACTGGGAA
*
41415 CT-ACGTT
834 CTAACGTC
*
41422 GGCCAGAGAGGCGGGATGCGCATGCCGTCGATCGCTAGGGTGGTAGGTGGGTTTAGGCACATCTT
1 GGCCAGAGAGGCGGGATGCGCATGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
41487 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCT
66 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
41552 TCATGTGAAG-TTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA-TTTTCAAAATTTTTAT
131 TCATGTGAAGCTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * ** *
41615 GGTT-TGAGATTTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCGCACTAGGTAGACATGATC
196 GGTTCAG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
*
41679 CTTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTG
260 CTTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
41744 ATCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAAT
325 ACCATTTGAAAAAAGTG-TCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
41809 CTCAAATGCTCTTTAAGGGGGTGTGAGTT-TTCAAGGTTTGATGAGGGATAGGAGGCCAATATAA
389 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT-GA-GTTTGATAAGGGATAGGAGGCCAATATAA
* * * * * *
41873 GGGCCAAGTACCAGCACCCATCACACATCGTGTGCGTACACCCCCTG------AATCGCCGGAAC
452 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCTCCAGAAC
* * * * *
41932 CGCAATGCCGCCAGTCAGGTTCTCCGGCGAAGCTCAGGCGATGGTG-CCCGGGTGAAAAAAAATA
517 CGCAATGCCGCCAGTAAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATA
* *
41996 CGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCTGGTCCAATCTTACA
582 CGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACA
* * * * *
42061 CTGGGAATGAACCTGTATGCCTAGACTAGGAATGAACTCCGCATGCCTAAGCCAACCCATAAAAC
647 CTGGGAA-CAACCT-TATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
* * * *
42126 GAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCAGAATGTGCAAGC
709 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
42171 TG
Statistics
Matches: 2788, Mismatches: 403, Indels: 393
0.78 0.11 0.11
Matches are distributed among these distances:
833 3 0.00
834 11 0.00
835 144 0.05
836 61 0.02
839 2 0.00
840 5 0.00
841 44 0.02
842 257 0.09
843 7 0.00
844 20 0.01
845 116 0.04
846 20 0.01
847 3 0.00
848 220 0.08
849 181 0.06
850 27 0.01
851 8 0.00
852 1 0.00
853 8 0.00
854 8 0.00
855 3 0.00
856 12 0.00
857 4 0.00
858 1 0.00
860 4 0.00
861 4 0.00
862 11 0.00
863 13 0.00
865 7 0.00
866 21 0.01
867 90 0.03
868 3 0.00
869 4 0.00
870 6 0.00
871 10 0.00
872 5 0.00
873 37 0.01
874 84 0.03
875 1 0.00
876 2 0.00
877 7 0.00
878 2 0.00
879 7 0.00
880 4 0.00
881 5 0.00
882 5 0.00
883 21 0.01
884 8 0.00
885 7 0.00
886 19 0.01
887 12 0.00
888 7 0.00
889 14 0.01
890 1 0.00
891 4 0.00
892 141 0.05
893 70 0.03
894 132 0.05
895 122 0.04
896 27 0.01
897 233 0.08
898 256 0.09
899 77 0.03
900 134 0.05
901 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (841 bp):
GGCCAGAGAGGCGGGATGCGCATGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCATGTGAAGCTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
GGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCC
TTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA
CCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGTTTGATAAGGGATAGGAGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCTCCAGAACCGCA
ATGCCGCCAGTAAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATACGAC
ACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGG
GAACAACCTTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTG
CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTTCCCCCTACGT
GCTGCCATCCTACTACCGCAACCCTCGGTCACAGCCCGATCTTAGACTGGGAACTAACGTC
Done.