Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168001.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_257, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 41954
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29


Found at i:23753 original size:20 final size:20

Alignment explanation


    Indices: 23728--23767  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

      23718 TTTTACTAAA

                                
      23728 GCAAAAGTGTAAGATGATGT
          1 GCAAAAGTGTAAGATGATGT

                                
      23748 GCAAAAGTGTAAGATGATGT
          1 GCAAAAGTGTAAGATGATGT

      23768 ATAAAAGAGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.40, C:0.05, G:0.30, T:0.25


Consensus pattern (20 bp):   
GCAAAAGTGTAAGATGATGT

Found at i:23773 original size:20 final size:20

Alignment explanation


    Indices: 23729--23774  Score: 74
    Period size: 20  Copynumber: 2.3  Consensus size: 20

      23719 TTTACTAAAG

                               *
      23729 CAAAAGTGTAAGATGATGTG
          1 CAAAAGTGTAAGATGATGTA

                                
      23749 CAAAAGTGTAAGATGATGTA
          1 CAAAAGTGTAAGATGATGTA

            *     
      23769 TAAAAG
          1 CAAAAG

      23775 AGGGTGAGGT


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  20   24  1.00

ACGTcount: A:0.46, C:0.04, G:0.26, T:0.24


Consensus pattern (20 bp):   
CAAAAGTGTAAGATGATGTA
Done.