Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 22 of 77
Found at i:4189181 original size:18 final size:20
Alignment explanation
Indices: 4189158--4189196 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
4189148 GGTGTTGTGC
*
4189158 TTGAG-AGTTT-GAAGATGG
1 TTGAGAAGTTTAGAAAATGG
4189176 TTGAGAAGTTTAGAAAATGG
1 TTGAGAAGTTTAGAAAATGG
4189196 T
1 T
4189197 AGTAATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 5 0.28
20 8 0.44
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (20 bp):
TTGAGAAGTTTAGAAAATGG
Found at i:4189737 original size:18 final size:17
Alignment explanation
Indices: 4189713--4189750 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
4189703 TTCTTTCTCA
*
4189713 ATTTTTTCCAT-TTTTCC
1 ATTTTTTTCATATTTT-C
4189730 ATTTTTTTCATATTTTC
1 ATTTTTTTCATATTTTC
4189747 ATTT
1 ATTT
4189751 ATAATGACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTTTCATATTTTC
Found at i:4190313 original size:25 final size:25
Alignment explanation
Indices: 4190272--4190400 Score: 159
Period size: 25 Copynumber: 5.1 Consensus size: 25
4190262 TATATAATCC
* *
4190272 ATGACATAATTTAAATGTGCATGAA
1 ATGACATAATTAAAATATGCATGAA
* * * *
4190297 ATGATATATTTACAATGTGCATGAA
1 ATGACATAATTAAAATATGCATGAA
*
4190322 ATGACATAATTAAAATATGTAATGAA
1 ATGACATAATTAAAATATG-CATGAA
*
4190348 ATGACATAATGAAAATATGCATGAA
1 ATGACATAATTAAAATATGCATGAA
* *
4190373 ATGATATAATTAAAATATACATGAA
1 ATGACATAATTAAAATATGCATGAA
4190398 ATG
1 ATG
4190401 TAAAACACAC
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
25 66 0.74
26 23 0.26
ACGTcount: A:0.49, C:0.06, G:0.14, T:0.31
Consensus pattern (25 bp):
ATGACATAATTAAAATATGCATGAA
Found at i:4190369 original size:51 final size:50
Alignment explanation
Indices: 4190272--4190400 Score: 152
Period size: 51 Copynumber: 2.6 Consensus size: 50
4190262 TATATAATCC
* * * * * * * *
4190272 ATGACATAATTTAAATGTGCATGAAATGATATATTTACAATGTGCATGAA
1 ATGACATAATTAAAATATGAATGAAATGACATAATGAAAATATGCATGAA
4190322 ATGACATAATTAAAATATGTAATGAAATGACATAATGAAAATATGCATGAA
1 ATGACATAATTAAAATATG-AATGAAATGACATAATGAAAATATGCATGAA
*
4190373 ATGATATAATTAAAATAT-ACATGAAATG
1 ATGACATAATTAAAATATGA-ATGAAATG
4190401 TAAAACACAC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 25 0.37
51 42 0.62
ACGTcount: A:0.49, C:0.06, G:0.14, T:0.31
Consensus pattern (50 bp):
ATGACATAATTAAAATATGAATGAAATGACATAATGAAAATATGCATGAA
Found at i:4191045 original size:12 final size:11
Alignment explanation
Indices: 4191028--4191082 Score: 58
Period size: 12 Copynumber: 4.8 Consensus size: 11
4191018 AATTAGTTCC
*
4191028 TTTTTTTTCCT
1 TTTTTTTTTCT
4191039 TTTTTTTTT-T
1 TTTTTTTTTCT
4191049 TTTGCTTTTTTCT
1 TTT--TTTTTTCT
*
4191062 TTTCTTTTCTCT
1 TTT-TTTTTTCT
4191074 TTTTTTTTT
1 TTTTTTTTT
4191083 TGAAACAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
10 4 0.11
11 13 0.34
12 17 0.45
13 4 0.11
ACGTcount: A:0.00, C:0.13, G:0.02, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:4191163 original size:47 final size:50
Alignment explanation
Indices: 4191075--4191168 Score: 131
Period size: 47 Copynumber: 1.9 Consensus size: 50
4191065 CTTTTCTCTT
*
4191075 TTTTTTTTTGAAACAAAACATAAATCAAACGTAAAACAAAACTTTTTATC
1 TTTTTTTTTGAAACAAAACATAAATAAAACGTAAAACAAAACTTTTTATC
** *
4191125 TTTTTTTTT-AAACAAAA-A-AAATAAAATTTAAAATAAAACTTTTT
1 TTTTTTTTTGAAACAAAACATAAATAAAACGTAAAACAAAACTTTTT
4191169 TTTTAGTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
47 22 0.55
48 1 0.03
49 8 0.20
50 9 0.22
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (50 bp):
TTTTTTTTTGAAACAAAACATAAATAAAACGTAAAACAAAACTTTTTATC
Found at i:4192637 original size:52 final size:52
Alignment explanation
Indices: 4192557--4192662 Score: 160
Period size: 52 Copynumber: 2.0 Consensus size: 52
4192547 ATTAGAATAC
* *
4192557 TATATGGTAGTTCACATAGTATCTATAGCTACATTTTTATGTGATGGTTGTA
1 TATATGGTAGTTCACATAGTATCCATAGCTACATTTTCATGTGATGGTTGTA
* *
4192609 TATATGGTAGTTCATATCA-TGTCCATAGCTACATTTTCATGTGATGGTTGTA
1 TATATGGTAGTTCACAT-AGTATCCATAGCTACATTTTCATGTGATGGTTGTA
4192661 TA
1 TA
4192663 AGTGATCTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
52 48 0.98
53 1 0.02
ACGTcount: A:0.26, C:0.11, G:0.19, T:0.43
Consensus pattern (52 bp):
TATATGGTAGTTCACATAGTATCCATAGCTACATTTTCATGTGATGGTTGTA
Found at i:4199884 original size:31 final size:31
Alignment explanation
Indices: 4199846--4199905 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
4199836 CTTCGTTGTC
*
4199846 GGATTTCTTTCAAAAAGACTTACATGTTATA
1 GGATTTCTTTAAAAAAGACTTACATGTTATA
*
4199877 GGATTTCTTTAAAAAAGATTTACATGTTA
1 GGATTTCTTTAAAAAAGACTTACATGTTA
4199906 AAAGATTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (31 bp):
GGATTTCTTTAAAAAAGACTTACATGTTATA
Found at i:4199913 original size:31 final size:31
Alignment explanation
Indices: 4199847--4199913 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
4199837 TTCGTTGTCG
* * *
4199847 GATTTCTTTCAAAAAGACTTACATGTTATAG
1 GATTTCTTTAAAAAAGACTTACATGTTAAAA
*
4199878 GATTTCTTTAAAAAAGATTTACATGTTAAAA
1 GATTTCTTTAAAAAAGACTTACATGTTAAAA
4199909 GATTT
1 GATTT
4199914 GCATATATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.40
Consensus pattern (31 bp):
GATTTCTTTAAAAAAGACTTACATGTTAAAA
Found at i:4199923 original size:2 final size:2
Alignment explanation
Indices: 4199916--4199947 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
4199906 AAAGATTTGC
4199916 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4199948 GGTAACATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4218579 original size:18 final size:18
Alignment explanation
Indices: 4218555--4218603 Score: 66
Period size: 17 Copynumber: 2.8 Consensus size: 18
4218545 CCAATACCTT
4218555 AACTAAAAGAAATATAG-
1 AACTAAAAGAAATATAGA
*
4218572 AACTTAAAGAAACT-TAGA
1 AACTAAAAGAAA-TATAGA
4218590 AACTAAAAGAAATA
1 AACTAAAAGAAATA
4218604 AAAAAAGTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 15 0.56
18 12 0.44
ACGTcount: A:0.63, C:0.08, G:0.10, T:0.18
Consensus pattern (18 bp):
AACTAAAAGAAATATAGA
Found at i:4222778 original size:21 final size:21
Alignment explanation
Indices: 4222731--4222771 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4222721 TTGTTGTCTT
* *
4222731 AATT-TTCAATGCACTTTCAA
1 AATTCTTCAATGAAATTTCAA
4222751 AATTCTTCAATGAAATTTCAA
1 AATTCTTCAATGAAATTTCAA
4222772 GAATCTTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (21 bp):
AATTCTTCAATGAAATTTCAA
Found at i:4229533 original size:13 final size:13
Alignment explanation
Indices: 4229515--4229594 Score: 52
Period size: 13 Copynumber: 5.8 Consensus size: 13
4229505 TTACGTATCT
4229515 ATAAAAAATAAAA
1 ATAAAAAATAAAA
* * *
4229528 ATAAAAATTATAT
1 ATAAAAAATAAAA
* *
4229541 ATATAAATTAAAA
1 ATAAAAAATAAAA
*
4229554 GTAAAAACTATATAAAA
1 AT-AAAA--A-ATAAAA
4229571 ATAAAAAATAAAA
1 ATAAAAAATAAAA
*
4229584 TTAATAAAATA
1 ATAA-AAAATA
4229595 TATATAATTT
Statistics
Matches: 51, Mismatches: 11, Indels: 9
0.72 0.15 0.13
Matches are distributed among these distances:
13 30 0.59
14 10 0.20
16 5 0.10
17 6 0.12
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.26
Consensus pattern (13 bp):
ATAAAAAATAAAA
Found at i:4229572 original size:24 final size:24
Alignment explanation
Indices: 4229514--4229583 Score: 86
Period size: 26 Copynumber: 2.8 Consensus size: 24
4229504 TTTACGTATC
* *
4229514 TATAAAAAATAAAAATAAAAATTA
1 TATAAAAATTAAAAATAAAAACTA
*
4229538 TATATATAAATTAAAAGTAAAAACTA
1 TATA-A-AAATTAAAAATAAAAACTA
*
4229564 TATAAAAATAAAAAATAAAA
1 TATAAAAATTAAAAATAAAA
4229584 TTAATAAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
24 17 0.44
25 2 0.05
26 20 0.51
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.26
Consensus pattern (24 bp):
TATAAAAATTAAAAATAAAAACTA
Found at i:4231535 original size:2 final size:2
Alignment explanation
Indices: 4231528--4231560 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
4231518 TAACCATAAG
4231528 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4231561 TTATGTATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4232070 original size:17 final size:19
Alignment explanation
Indices: 4232032--4232078 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 19
4232022 TCTAAATAAT
4232032 AAAAAAT-TTTTATCTTTC
1 AAAAAATATTTTATCTTTC
*
4232050 AAAAAATATTTT-T-TTTG
1 AAAAAATATTTTATCTTTC
*
4232067 AAAACATATTTT
1 AAAAAATATTTT
4232079 CACAAAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 14 0.54
18 8 0.31
19 4 0.15
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (19 bp):
AAAAAATATTTTATCTTTC
Found at i:4232723 original size:22 final size:22
Alignment explanation
Indices: 4232706--4232748 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
4232696 ATTTTGAGTT
4232706 AAATTTTATTTTTATTTGTATTA
1 AAATTTTA-TTTTATTTGTATTA
4232729 AAATTTTATTTTATTT-TATT
1 AAATTTTATTTTATTTGTATT
4232749 GATCTAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 4 0.20
22 8 0.40
23 8 0.40
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (22 bp):
AAATTTTATTTTATTTGTATTA
Found at i:4240866 original size:2 final size:2
Alignment explanation
Indices: 4240859--4240894 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
4240849 CAGTTTCTGA
* *
4240859 AT AT AT AT AT AT AT AT AT AT AT GT AT AT AG AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4240895 TTATTTATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4241793 original size:31 final size:30
Alignment explanation
Indices: 4241722--4241796 Score: 105
Period size: 30 Copynumber: 2.5 Consensus size: 30
4241712 TGTTGAGAAC
* * *
4241722 TTATTTAAGTACAAATTAAAATTTAAGAGT
1 TTATTTAAATACAAATTAAAAGTTAAAAGT
4241752 TTATTTAAATACAAATTAAAAGTTAAAAGTT
1 TTATTTAAATACAAATTAAAAGTTAAAAG-T
*
4241783 TTGTTTAAATACAA
1 TTATTTAAATACAA
4241797 TAAAAGAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 26 0.65
31 14 0.35
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (30 bp):
TTATTTAAATACAAATTAAAAGTTAAAAGT
Found at i:4243869 original size:12 final size:12
Alignment explanation
Indices: 4243852--4243884 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
4243842 AGTGGTGTTG
4243852 GGGATTGAGTTT
1 GGGATTGAGTTT
4243864 GGGATTGAGTTT
1 GGGATTGAGTTT
4243876 GGGATTGAG
1 GGGATTGAG
4243885 GTTTTTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.36
Consensus pattern (12 bp):
GGGATTGAGTTT
Found at i:4249374 original size:17 final size:17
Alignment explanation
Indices: 4249346--4249390 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
4249336 ATTTATTATC
4249346 AAAATT-ATTAATTAAT
1 AAAATTAATTAATTAAT
*
4249362 AAAATTAATTAATTATT
1 AAAATTAATTAATTAAT
4249379 AATAA-TAATTAA
1 AA-AATTAATTAA
4249391 ATTCTATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 6 0.23
17 18 0.69
18 2 0.08
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AAAATTAATTAATTAAT
Found at i:4249508 original size:41 final size:41
Alignment explanation
Indices: 4249434--4249668 Score: 178
Period size: 41 Copynumber: 5.7 Consensus size: 41
4249424 TTCTTAAAAC
* *
4249434 TAAATATTAATTTAATAA-ATT-TAAATGTTAATTTAATCATAT
1 TAAATATTAA-TTAATAATATTATATATG--AATTTAATAATAT
*
4249476 TAAATATTAATTAATAATATTTTATATGAATTTAATAATAT
1 TAAATATTAATTAATAATATTATATATGAATTTAATAATAT
* * * * *
4249517 TCAATATTAATTTAATATTATTAAAT-TAGTATTTAGT-ATAT
1 TAAATATTAA-TTAATAATATTATATAT-GAATTTAATAATAT
* * ** * * *
4249558 TAAGTATTATTTAATAATGCTATATAT-TATTGAACAATAT
1 TAAATATTAATTAATAATATTATATATGAATTTAATAATAT
* * * *
4249598 TAAATATTAATTTAATAATACTAAATATTCAATTTCATAATAT
1 TAAATATTAA-TTAATAATATTATATA-TGAATTTAATAATAT
*
4249641 TAAATATT--TTAATAACATTATATATGAA
1 TAAATATTAATTAATAATATTATATATGAA
4249669 ACATTAATTT
Statistics
Matches: 154, Mismatches: 30, Indels: 21
0.75 0.15 0.10
Matches are distributed among these distances:
39 8 0.05
40 36 0.23
41 55 0.36
42 33 0.21
43 22 0.14
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (41 bp):
TAAATATTAATTAATAATATTATATATGAATTTAATAATAT
Found at i:4249637 original size:22 final size:21
Alignment explanation
Indices: 4249415--4249648 Score: 210
Period size: 21 Copynumber: 11.3 Consensus size: 21
4249405 TATTTTAATT
** * *
4249415 AATATTAATTTCTTAAAACTA
1 AATATTAATTTAATAATATTA
4249436 AATATTAATTTAATAA-ATTTA
1 AATATTAATTTAATAATA-TTA
* *
4249457 AATGTTAATTTAATCATATTA
1 AATATTAATTTAATAATATTA
*
4249478 AATATTAA-TTAATAATATTT
1 AATATTAATTTAATAATATTA
* * *
4249498 TATATGAATTTAATAATATTC
1 AATATTAATTTAATAATATTA
*
4249519 AATATTAATTTAATATTATTA
1 AATATTAATTTAATAATATTA
* *
4249540 AATTAGT-ATTTAGT-ATATTA
1 AA-TATTAATTTAATAATATTA
* **
4249560 AGTATT-ATTTAATAATGCTA
1 AATATTAATTTAATAATATTA
* * *
4249580 TATATT-ATTGAACAATATTA
1 AATATTAATTTAATAATATTA
*
4249600 AATATTAATTTAATAATACTA
1 AATATTAATTTAATAATATTA
*
4249621 AATATTCAATTTCATAATATTA
1 AATATT-AATTTAATAATATTA
4249643 AATATT
1 AATATT
4249649 TTAATAACAT
Statistics
Matches: 171, Mismatches: 35, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
19 9 0.05
20 46 0.27
21 93 0.54
22 23 0.13
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (21 bp):
AATATTAATTTAATAATATTA
Found at i:4249663 original size:81 final size:79
Alignment explanation
Indices: 4249434--4249668 Score: 224
Period size: 81 Copynumber: 2.9 Consensus size: 79
4249424 TTCTTAAAAC
* *
4249434 TAAATATTAATTTAATAA-ATTTAAATGTTAATTTAATCATATTAAATATTAATTAATAATATTT
1 TAAATATTAATTTAATAATA-TTAAATATTAATTT-AT-ATATTAAATATT--TTAATAATATTA
* *
4249498 TATATGAATTTAATAATAT
61 TATATGAATTGAACAATAT
* * * * **
4249517 TCAATATTAATTTAATATTATTAAATTAGT-ATTTAGTATATTAAGTATTATTTAATAATGCTAT
1 TAAATATTAATTTAATAATATTAAA-TATTAATTTA-TATATTAAATA-T-TTTAATAATATTAT
*
4249581 ATAT-TATTGAACAATAT
62 ATATGAATTGAACAATAT
* *
4249598 TAAATATTAATTTAATAATACTAAATATTCAATTTCATAATATTAAATATTTTAATAACATTATA
1 TAAATATTAATTTAATAATATTAAATATT-AATTT-AT-ATATTAAATATTTTAATAATATTATA
4249663 TATGAA
63 TATGAA
4249669 ACATTAATTT
Statistics
Matches: 122, Mismatches: 20, Indels: 21
0.75 0.12 0.13
Matches are distributed among these distances:
80 3 0.02
81 47 0.39
82 31 0.25
83 37 0.30
84 4 0.03
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.47
Consensus pattern (79 bp):
TAAATATTAATTTAATAATATTAAATATTAATTTATATATTAAATATTTTAATAATATTATATAT
GAATTGAACAATAT
Found at i:4249692 original size:11 final size:10
Alignment explanation
Indices: 4249675--4249772 Score: 62
Period size: 11 Copynumber: 9.8 Consensus size: 10
4249665 TGAAACATTA
4249675 ATTTAATAAT
1 ATTTAATAAT
4249685 ATTT--TAAT
1 ATTTAATAAT
*
4249693 ATTTAATATT
1 ATTTAATAAT
4249703 ATTTTAATAAT
1 A-TTTAATAAT
*
4249714 A--TATTAAT
1 ATTTAATAAT
* *
4249722 ATTAAATATT
1 ATTTAATAAT
4249732 GATTTAA-ATAT
1 -ATTTAATA-AT
*
4249743 ATTTAATATT
1 ATTTAATAAT
*
4249753 ATTTTAATAAC
1 A-TTTAATAAT
4249764 ATTTTAATA
1 A-TTTAATA
4249773 TCAAATACTA
Statistics
Matches: 68, Mismatches: 11, Indels: 17
0.71 0.11 0.18
Matches are distributed among these distances:
8 15 0.22
10 21 0.31
11 32 0.47
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.53
Consensus pattern (10 bp):
ATTTAATAAT
Found at i:4249694 original size:29 final size:29
Alignment explanation
Indices: 4249635--4249833 Score: 129
Period size: 29 Copynumber: 7.3 Consensus size: 29
4249625 TTCAATTTCA
* *
4249635 TAATATTAAATA-T--TTTAATAACATTA
1 TAATATTAAATATTAATTTAATAATATTT
* *
4249661 T-ATATGAAACATTAATTTAATAATATTT
1 TAATATTAAATATTAATTTAATAATATTT
* * *
4249689 TAATATTTAATATTATTTTAATAATATAT
1 TAATATTAAATATTAATTTAATAATATTT
*
4249718 TAATATTAAATATTGATTT-A-AATA---
1 TAATATTAAATATTAATTTAATAATATTT
* *
4249742 T-AT-TT-AATATTATTTTAATAACATTT
1 TAATATTAAATATTAATTTAATAATATTT
* * *
4249768 TAATATCAAATACTAATTTAGT-ATATTT
1 TAATATTAAATATTAATTTAATAATATTT
* * *
4249796 TTATATTATCGA-ATTAATTTTATAATATTT
1 TAATATTA--AATATTAATTTAATAATATTT
*
4249826 TAGTATTA
1 TAATATTA
4249834 TTTTAATATT
Statistics
Matches: 130, Mismatches: 28, Indels: 26
0.71 0.15 0.14
Matches are distributed among these distances:
21 9 0.07
22 3 0.02
23 5 0.04
24 1 0.01
25 8 0.06
26 3 0.02
27 6 0.05
28 25 0.19
29 57 0.44
30 13 0.10
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.51
Consensus pattern (29 bp):
TAATATTAAATATTAATTTAATAATATTT
Found at i:4249698 original size:18 final size:18
Alignment explanation
Indices: 4249675--4249711 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
4249665 TGAAACATTA
4249675 ATTTAATAATATTTTAAT
1 ATTTAATAATATTTTAAT
*
4249693 ATTTAATATTATTTTAAT
1 ATTTAATAATATTTTAAT
4249711 A
1 A
4249712 ATATATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTAATAATATTTTAAT
Found at i:4249715 original size:21 final size:21
Alignment explanation
Indices: 4249413--4249773 Score: 178
Period size: 21 Copynumber: 17.3 Consensus size: 21
4249403 AATATTTTAA
** * *
4249413 TTAATATTAATTTCTTAAAAC
1 TTAATATTAATTTAATAATAT
*
4249434 TAAATATTAATTTAATAA-AT
1 TTAATATTAATTTAATAATAT
* *
4249454 TTAAATGTTAATTTAATCATAT
1 TT-AATATTAATTTAATAATAT
*
4249476 TAAATATTAA-TTAATAATAT
1 TTAATATTAATTTAATAATAT
* *
4249496 TTTATATGAATTTAATAATAT
1 TTAATATTAATTTAATAATAT
* *
4249517 TCAATATTAATTTAATATTA-
1 TTAATATTAATTTAATAATAT
*
4249537 TTAA-ATTAGTATTTAGT-ATA-
1 TTAATATTA--ATTTAATAATAT
*
4249557 TTAAGTATT-ATTTAATAAT-G
1 TTAA-TATTAATTTAATAATAT
* * *
4249577 CTATATATT-ATTGAACAATAT
1 TTA-ATATTAATTTAATAATAT
* *
4249598 TAAATATTAATTTAATAATAC
1 TTAATATTAATTTAATAATAT
* *
4249619 TAAATATTCAATTTCATAATAT
1 TTAATATT-AATTTAATAATAT
* *
4249641 TAAATATTTTAA-TAACATTATATAT
1 TTAATA--TTAATTTA-A-TA-ATAT
** *
4249666 GAAACATTAATTTAATAATAT
1 TTAATATTAATTTAATAATAT
* *
4249687 TT--TAAT-ATTTAATATTAT
1 TTAATATTAATTTAATAATAT
* * *
4249705 TT--TAATAATATATTAATAT
1 TTAATATTAATTTAATAATAT
* *
4249724 TAAATATTGATTTAA-ATATAT
1 TTAATATTAATTTAATA-ATAT
* *
4249745 TTAATATTATTTTAATAACATT
1 TTAATATTAATTTAATAATA-T
4249767 TTAATAT
1 TTAATAT
4249774 CAAATACTAA
Statistics
Matches: 261, Mismatches: 54, Indels: 49
0.72 0.15 0.13
Matches are distributed among these distances:
18 17 0.07
19 22 0.08
20 49 0.19
21 116 0.44
22 35 0.13
23 8 0.03
24 6 0.02
25 8 0.03
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.48
Consensus pattern (21 bp):
TTAATATTAATTTAATAATAT
Found at i:4249787 original size:50 final size:49
Alignment explanation
Indices: 4249691--4249804 Score: 147
Period size: 50 Copynumber: 2.3 Consensus size: 49
4249681 TAATATTTTA
* * * *
4249691 ATATTTAATATTATTTTAATAATATATTAATATTAAATATTGATTTAAAT
1 ATATTTAATATTATTTTAATAACATATTAATATCAAATACTAATTT-AAT
* *
4249741 ATATTTAATATTATTTTAATAACATTTTAATATCAAATACTAATTTAGT
1 ATATTTAATATTATTTTAATAACATATTAATATCAAATACTAATTTAAT
*
4249790 ATATTTTTATATTAT
1 ATA-TTTAATATTAT
4249805 CGAATTAATT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
49 5 0.09
50 51 0.91
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.53
Consensus pattern (49 bp):
ATATTTAATATTATTTTAATAACATATTAATATCAAATACTAATTTAAT
Found at i:4249935 original size:18 final size:18
Alignment explanation
Indices: 4249909--4249966 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
4249899 TACTAAATAC
* *
4249909 TATTAAATAATATTTTTA
1 TATTTAATAATATTTTAA
*
4249927 TATTTAATATTATTTTAA
1 TATTTAATAATATTTTAA
* *
4249945 TATTTAATTAGATTTTAA
1 TATTTAATAATATTTTAA
4249963 TATT
1 TATT
4249967 ATTTGAATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (18 bp):
TATTTAATAATATTTTAA
Found at i:4249935 original size:28 final size:28
Alignment explanation
Indices: 4249863--4249940 Score: 75
Period size: 28 Copynumber: 2.7 Consensus size: 28
4249853 ATTATCAATT
* *
4249863 TTTTAAAATTTTAATATTAATTGAATAAAA
1 TTTTAATA-TTTAATATT-ATTAAATAAAA
* * * *
4249893 TTTTAATACTAAATACTATTAAATAATA
1 TTTTAATATTTAATATTATTAAATAAAA
*
4249921 TTTTTATATTTAATATTATT
1 TTTTAATATTTAATATTATT
4249941 TTAATATTTA
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
28 25 0.66
29 6 0.16
30 7 0.18
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (28 bp):
TTTTAATATTTAATATTATTAAATAAAA
Found at i:4249946 original size:29 final size:29
Alignment explanation
Indices: 4249645--4249946 Score: 91
Period size: 29 Copynumber: 10.3 Consensus size: 29
4249635 TAATATTAAA
* * ** *
4249645 TATTTTAATAACA-TTATATATGAAACAT
1 TATTTTAATAATATTTTTATATTTAATAT
* *
4249673 TAATTTAATAATATTTTAATATTTAATAT
1 TATTTTAATAATATTTTTATATTTAATAT
* * *
4249702 TATTTTAATAATATATTAATATTAAATAT
1 TATTTTAATAATATTTTTATATTTAATAT
* * *
4249731 TGATTTAAAT-ATATTTAATATTATTTTAATAA
1 T-ATTTTAATAATATTT-TTA-TA-TTTAATAT
* * ** *
4249763 CATTTTAAT-ATCAAATACTA-ATTTAGTA-
1 TATTTTAATAAT--ATTTTTATATTTAATAT
* * ** * *
4249791 TATTTTTATATTATCGAATTA-ATTTTATAA
1 TATTTTAATAATAT--TTTTATATTTAATAT
* * * *
4249821 TATTTTAGTATTATTTTAATATTAAATAT
1 TATTTTAATAATATTTTTATATTTAATAT
** *
4249850 TAAATT-ATCAAT-TTTTTAAAATTTTAATAT
1 TATTTTAAT-AATATTTTT-ATA-TTTAATAT
* * * * * * *
4249880 TAATTGAATAAAATTTTAATACTAAATAC
1 TATTTTAATAATATTTTTATATTTAATAT
*
4249909 TA-TTAAATAATATTTTTATATTTAATAT
1 TATTTTAATAATATTTTTATATTTAATAT
4249937 TATTTTAATA
1 TATTTTAATA
4249947 TTTAATTAGA
Statistics
Matches: 196, Mismatches: 60, Indels: 35
0.67 0.21 0.12
Matches are distributed among these distances:
27 1 0.01
28 47 0.24
29 85 0.43
30 36 0.18
31 17 0.09
32 8 0.04
33 2 0.01
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (29 bp):
TATTTTAATAATATTTTTATATTTAATAT
Found at i:4249985 original size:128 final size:129
Alignment explanation
Indices: 4249681--4249967 Score: 289
Period size: 128 Copynumber: 2.3 Consensus size: 129
4249671 ATTAATTTAA
* *
4249681 TAATATTT-TAATATTTAA-TATTATTTTAATA--ATATATTAATATTA--AATATTGATTTAAA
1 TAAT-TTTATAATATTTAAGTATGATTTTAATATTAAATATTAA-ATTATCAAT-TT--TTTAAA
* * * * *
4249740 TATATTTAATATTATTTTAATAACATTTTAATATCAAATACTAATTTAGTATATTTTTATATTAT
61 TATATTTAATATTAATTGAATAAAATTTTAATATCAAATACTAATTAAATATATTTTTATATTAT
4249805 CGAAT
126 C-AAT
* *
4249810 TAATTTTATAATATTTTAGTATTATTTTAATATTAAATATTAAATTATCAATTTTTTAAA-AT-T
1 TAATTTTATAATATTTAAGTATGATTTTAATATTAAATATTAAATTATCAATTTTTTAAATATAT
4249873 TTAATATTAATTGAATAAAATTTTAATA-CTAAATACT-ATTAAATAATATTTTTATATT-T-AA
66 TTAATATTAATTGAATAAAATTTTAATATC-AAATACTAATTAAAT-ATATTTTTATATTATCAA
4249934 -
129 T
* *
4249934 T-ATTATTTTAATATTTAATTA-GATTTTAATATTA
1 TAATT-TTATAATATTTAAGTATGATTTTAATATTA
4249968 TTTGAATATT
Statistics
Matches: 138, Mismatches: 11, Indels: 24
0.80 0.06 0.14
Matches are distributed among these distances:
123 15 0.11
124 14 0.10
125 2 0.01
127 7 0.05
128 49 0.36
129 15 0.11
130 19 0.14
131 4 0.03
132 10 0.07
133 3 0.02
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (129 bp):
TAATTTTATAATATTTAAGTATGATTTTAATATTAAATATTAAATTATCAATTTTTTAAATATAT
TTAATATTAATTGAATAAAATTTTAATATCAAATACTAATTAAATATATTTTTATATTATCAAT
Found at i:4250078 original size:11 final size:10
Alignment explanation
Indices: 4250062--4250157 Score: 65
Period size: 11 Copynumber: 9.4 Consensus size: 10
4250052 ATTAGTATTA
4250062 ATTTAATAATT
1 ATTTAATAA-T
4250073 ATTTAA-AAT
1 ATTTAATAAT
*
4250082 -TTTAATATT
1 ATTTAATAAT
4250091 AAGTTT-ATAAT
1 -A-TTTAATAAT
*
4250102 ATTT-TTAAT
1 ATTTAATAAT
* *
4250111 ATTAAATATT
1 ATTTAATAAT
4250121 AATTTAATAAT
1 -ATTTAATAAT
*
4250132 ATTATAATATT
1 ATT-TAATAAT
4250143 ATTTGAATAAT
1 ATTT-AATAAT
4250154 ATTT
1 ATTT
4250158 TGTATTAAGT
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
8 5 0.07
9 13 0.19
10 10 0.15
11 36 0.54
12 3 0.04
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (10 bp):
ATTTAATAAT
Found at i:4250101 original size:30 final size:31
Alignment explanation
Indices: 4250041--4250143 Score: 94
Period size: 29 Copynumber: 3.5 Consensus size: 31
4250031 ATATTTTCTC
* *
4250041 ATTATTT-TAATATT-AGTATTAATTTAATA
1 ATTATTTAAAATATTAAATATTAATTTAATA
*
4250070 ATTATTTAAAAT-TTTAATATTAAGTTT-ATA
1 ATTATTTAAAATATTAAATATTAA-TTTAATA
**
4250100 A-TATTTTTAATATTAAATATTAATTTAATA
1 ATTATTTAAAATATTAAATATTAATTTAATA
*
4250130 A-TA-TTATAATATTA
1 ATTATTTAAAATATTA
4250144 TTTGAATAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 10
0.80 0.08 0.13
Matches are distributed among these distances:
29 30 0.48
30 30 0.48
31 3 0.05
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (31 bp):
ATTATTTAAAATATTAAATATTAATTTAATA
Found at i:4250151 original size:22 final size:21
Alignment explanation
Indices: 4250107--4250156 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 21
4250097 ATAATATTTT
4250107 TAATATTAAATATTAATTTAA
1 TAATATTAAATATTAATTTAA
4250128 TAATATTATAATATT-ATTTGAA
1 TAATATTA-AATATTAATTT-AA
4250150 TAATATT
1 TAATATT
4250157 TTGTATTAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (21 bp):
TAATATTAAATATTAATTTAA
Found at i:4250207 original size:50 final size:50
Alignment explanation
Indices: 4250110--4250207 Score: 119
Period size: 50 Copynumber: 2.0 Consensus size: 50
4250100 ATATTTTTAA
* *
4250110 TATTAAATATTAATTTAATAATATTATAATATTATTTGAATAATATTTTG
1 TATTAAATATTAATTTAATAATATTATAATATAATTTGAACAATATTTTG
* * *
4250160 TATTAAGTATTAATTTAATGAGA-ATT-TAATATAATTTTAACATTATTT
1 TATTAAATATTAATTTAAT-A-ATATTATAATATAATTTGAACAATATTT
4250208 ATTTAATTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
50 36 0.88
51 4 0.10
52 1 0.02
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (50 bp):
TATTAAATATTAATTTAATAATATTATAATATAATTTGAACAATATTTTG
Found at i:4250259 original size:19 final size:19
Alignment explanation
Indices: 4250235--4250275 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
4250225 TTTCAATATT
*
4250235 ATTTAATTAATATAATTTA
1 ATTTAATTAATATAAATTA
4250254 ATTTAATTAATATAAATTA
1 ATTTAATTAATATAAATTA
4250273 ATT
1 ATT
4250276 ATCTAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTAATTAATATAAATTA
Found at i:4251252 original size:17 final size:17
Alignment explanation
Indices: 4251217--4251253 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
4251207 TATATAATAA
*
4251217 ATTAATAAATAAGTATT
1 ATTAATAAATAAATATT
*
4251234 ATTAATAAATAAATTTT
1 ATTAATAAATAAATATT
4251251 ATT
1 ATT
4251254 TTAATTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (17 bp):
ATTAATAAATAAATATT
Found at i:4252347 original size:11 final size:10
Alignment explanation
Indices: 4252297--4252348 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
4252287 TATACTATAA
*
4252297 ATAAAATTTG
1 ATAAATTTTG
*
4252307 ATAACTTTTG
1 ATAAATTTTG
*
4252317 ATAAAATTTTA
1 AT-AAATTTTG
*
4252328 ATAACTTTTG
1 ATAAATTTTG
4252338 ATACAATTTTG
1 ATA-AATTTTG
4252349 GTAACCGTCA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 19 0.58
11 14 0.42
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (10 bp):
ATAAATTTTG
Found at i:4252353 original size:21 final size:21
Alignment explanation
Indices: 4252297--4252353 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
4252287 TATACTATAA
4252297 ATAAAA-TTTGATAACTTTTG
1 ATAAAATTTTGATAACTTTTG
*
4252317 ATAAAATTTTAATAACTTTTG
1 ATAAAATTTTGATAACTTTTG
* *
4252338 ATACAATTTTGGTAAC
1 ATAAAATTTTGATAAC
4252354 CGTCAATATT
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 6 0.19
21 26 0.81
ACGTcount: A:0.40, C:0.07, G:0.09, T:0.44
Consensus pattern (21 bp):
ATAAAATTTTGATAACTTTTG
Found at i:4252813 original size:21 final size:21
Alignment explanation
Indices: 4252782--4252838 Score: 69
Period size: 21 Copynumber: 2.6 Consensus size: 21
4252772 AAGTTATGAA
*
4252782 TGATATACTATTAAATTATCAT
1 TGAT-TACTATTAAATTAGCAT
4252804 TGATTACTATTAAATTAGCAT
1 TGATTACTATTAAATTAGCAT
* *
4252825 CGAAGTACTATTAA
1 TG-ATTACTATTAA
4252839 TTTAAGAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 17 0.55
22 14 0.45
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (21 bp):
TGATTACTATTAAATTAGCAT
Found at i:4253002 original size:22 final size:22
Alignment explanation
Indices: 4252977--4253027 Score: 95
Period size: 21 Copynumber: 2.4 Consensus size: 22
4252967 TCAATAATTA
4252977 ACTAATTTTTTATTAAATTATC
1 ACTAATTTTTTATTAAATTATC
4252999 ACTAA-TTTTTATTAAATTATC
1 ACTAATTTTTTATTAAATTATC
4253020 ACTAATTT
1 ACTAATTT
4253028 ACAACAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 21 0.75
22 7 0.25
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (22 bp):
ACTAATTTTTTATTAAATTATC
Found at i:4253036 original size:21 final size:21
Alignment explanation
Indices: 4252991--4253043 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
4252981 ATTTTTTATT
** **
4252991 AAATTATCACTAATTTTTATT
1 AAATTATCACTAATTTACAAC
4253012 AAATTATCACTAATTTACAAC
1 AAATTATCACTAATTTACAAC
4253033 AAATTATCACT
1 AAATTATCACT
4253044 GATTCGCAAC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.43, C:0.15, G:0.00, T:0.42
Consensus pattern (21 bp):
AAATTATCACTAATTTACAAC
Found at i:4253053 original size:21 final size:21
Alignment explanation
Indices: 4253012--4253053 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
4253002 AATTTTTATT
*
4253012 AAATTATCACTAATTTACAAC
1 AAATTATCACTAATTCACAAC
* *
4253033 AAATTATCACTGATTCGCAAC
1 AAATTATCACTAATTCACAAC
4253054 TAAGTTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (21 bp):
AAATTATCACTAATTCACAAC
Found at i:4253149 original size:19 final size:19
Alignment explanation
Indices: 4253125--4253162 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
4253115 ATTGTTATGT
4253125 TATTATGCATTTA-TTACTA
1 TATTAT-CATTTATTTACTA
4253144 TATTATCATTTATTTACTA
1 TATTATCATTTATTTACTA
4253163 CTTAGTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.32, C:0.11, G:0.03, T:0.55
Consensus pattern (19 bp):
TATTATCATTTATTTACTA
Found at i:4253158 original size:22 final size:22
Alignment explanation
Indices: 4253133--4253426 Score: 85
Period size: 22 Copynumber: 13.3 Consensus size: 22
4253123 GTTATTATGC
* * *
4253133 ATTTATTACTATATTATCATTT
1 ATTTACTACTAAATTATCAATT
* * *
4253155 ATTTACTACTTAGTTTTCAATT
1 ATTTACTACTAAATTATCAATT
* * * *
4253177 ATTTACTACAAAATCATCACTG
1 ATTTACTACTAAATTATCAATT
* * * *
4253199 ATTTATTACTAAATTAACTATA
1 ATTTACTACTAAATTATCAATT
* * * * * *
4253221 ATTCATTACCAAGTTATTAATA
1 ATTTACTACTAAATTATCAATT
* *
4253243 ATTTA-TATTAAATTACTC-ATA
1 ATTTACTACTAAATTA-TCAATT
* * * * *
4253264 ATTTATTATTAAGTTATCACTA
1 ATTTACTACTAAATTATCAATT
* * *
4253286 ATTAACTATTAAATTATCAATG
1 ATTTACTACTAAATTATCAATT
4253308 ATTTACTACTATTAAGTTAT--ATT
1 ATTTACTACTA--AA-TTATCAATT
** * * *
4253331 AATTTACTTTTAAGTTTTCAATG
1 -ATTTACTACTAAATTATCAATT
* * *
4253354 ATTAATTACTAAATTAT-TATT
1 ATTTACTACTAAATTATCAATT
* ** *
4253375 GATTTACTACTAAGTTATTTATG
1 -ATTTACTACTAAATTATCAATT
* *
4253398 ATCTACTACTAAGTTTATCAATT
1 ATTTACTACTAA-ATTATCAATT
*
4253421 AATTAC
1 ATTTAC
4253427 CATTAAACTA
Statistics
Matches: 195, Mismatches: 65, Indels: 23
0.69 0.23 0.08
Matches are distributed among these distances:
21 22 0.11
22 141 0.72
23 17 0.09
24 11 0.06
25 4 0.02
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.47
Consensus pattern (22 bp):
ATTTACTACTAAATTATCAATT
Found at i:4253265 original size:43 final size:43
Alignment explanation
Indices: 4253199--4253301 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 43
4253189 ATCATCACTG
* * *
4253199 ATTTATTACTAAATTAACTATAATTCATTACCAAGTTATTAATA
1 ATTTACTATTAAATT-ACTATAATTCATTACCAAGTTATCAATA
* ** *
4253243 ATTTA-TATTAAATTACTCATAATTTATTATTAAGTTATCACTA
1 ATTTACTATTAAATTACT-ATAATTCATTACCAAGTTATCAATA
*
4253286 ATTAACTATTAAATTA
1 ATTTACTATTAAATTA
4253302 TCAATGATTT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 3 0.06
43 32 0.64
44 15 0.30
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.46
Consensus pattern (43 bp):
ATTTACTATTAAATTACTATAATTCATTACCAAGTTATCAATA
Found at i:4253364 original size:46 final size:47
Alignment explanation
Indices: 4253270--4253364 Score: 120
Period size: 46 Copynumber: 2.0 Consensus size: 47
4253260 CATAATTTAT
*
4253270 TATTAAGTTATCACTAATTAACTATTAAATTATCAATGATTTACTAC
1 TATTAAGTTATCACTAATTAACTATTAAATTATCAATGATTAACTAC
* * * * * *
4253317 TATTAAGTTAT-ATTAATTTACTTTTAAGTTTTCAATGATTAATTAC
1 TATTAAGTTATCACTAATTAACTATTAAATTATCAATGATTAACTAC
4253363 TA
1 TA
4253365 AATTATTATT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
46 30 0.73
47 11 0.27
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.47
Consensus pattern (47 bp):
TATTAAGTTATCACTAATTAACTATTAAATTATCAATGATTAACTAC
Found at i:4253473 original size:22 final size:22
Alignment explanation
Indices: 4253231--4253412 Score: 91
Period size: 22 Copynumber: 8.2 Consensus size: 22
4253221 ATTCATTACC
4253231 AAGTTATTAATAATTTA-TATT
1 AAGTTATTAATAATTTACTATT
* * * *
4253252 AAATTACTCATAATTTATTATT
1 AAGTTATTAATAATTTACTATT
* * *
4253274 AAGTTATCACTAATTAACTATT
1 AAGTTATTAATAATTTACTATT
* * *
4253296 AAATTATCAATGATTTACTACTATT
1 AAGTTATTAAT-AATT--TACTATT
* *
4253321 AAGTTA-TATTAATTTACTTTT
1 AAGTTATTAATAATTTACTATT
* * * *
4253342 AAGTT-TTCAATGATTAATTACT
1 AAGTTATT-AATAATTTACTATT
* * * *
4253364 AAATTATTATTGATTTACTACT
1 AAGTTATTAATAATTTACTATT
* * * *
4253386 AAGTTATTTATGATCTACTACT
1 AAGTTATTAATAATTTACTATT
4253408 AAGTT
1 AAGTT
4253413 TATCAATTAA
Statistics
Matches: 121, Mismatches: 33, Indels: 13
0.72 0.20 0.08
Matches are distributed among these distances:
21 26 0.21
22 74 0.61
23 8 0.07
24 2 0.02
25 11 0.09
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (22 bp):
AAGTTATTAATAATTTACTATT
Found at i:4253498 original size:22 final size:22
Alignment explanation
Indices: 4253453--4253498 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
4253443 ACTAATTTAC
* *
4253453 TATTAAGTTATTAATGATTTAT
1 TATTAAGTTATCAATGATTAAT
*
4253475 TATTAAGTTATCAATTATTAAT
1 TATTAAGTTATCAATGATTAAT
4253497 TA
1 TA
4253499 CTAAATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (22 bp):
TATTAAGTTATCAATGATTAAT
Found at i:4253821 original size:22 final size:22
Alignment explanation
Indices: 4253779--4253912 Score: 119
Period size: 22 Copynumber: 6.2 Consensus size: 22
4253769 TATAAAAATG
* ** *
4253779 TTATCAATGATTGAAAATTAAG
1 TTATCAATGATTTACTATTAAA
* *
4253801 TTATCAGTGATTTACTGTTAAA
1 TTATCAATGATTTACTATTAAA
* *
4253823 CTATCAATGATTTACTACTAAA
1 TTATCAATGATTTACTATTAAA
* *
4253845 TTATCAATGATTTACTA-CAAT
1 TTATCAATGATTTACTATTAAA
* * * *
4253866 TTATGAATGATTTGCCATTAAG
1 TTATCAATGATTTACTATTAAA
*
4253888 TTGTCAATGATTT-CTATTAAA
1 TTATCAATGATTTACTATTAAA
4253909 TTAT
1 TTAT
4253913 TGATAATTTA
Statistics
Matches: 88, Mismatches: 23, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
21 25 0.28
22 63 0.72
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (22 bp):
TTATCAATGATTTACTATTAAA
Found at i:4253895 original size:43 final size:44
Alignment explanation
Indices: 4253848--4253953 Score: 112
Period size: 43 Copynumber: 2.5 Consensus size: 44
4253838 TACTAAATTA
* * *
4253848 TCAATGATTTACTA-CAATTTA-TGAATGATTTGCCATTAAGTTG
1 TCAATGATTTACTATCAAATTATTG-ATAATTTACCATTAAGTTG
*
4253891 TCAATGATTT-CTATTAAATTATTGATAATTTACCATTAAGTTG
1 TCAATGATTTACTATCAAATTATTGATAATTTACCATTAAGTTG
** *
4253934 TTGATGATTTATTAT-AAATT
1 TCAATGATTTACTATCAAATT
4253954 TATAACTAAT
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
42 3 0.06
43 45 0.85
44 5 0.09
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.46
Consensus pattern (44 bp):
TCAATGATTTACTATCAAATTATTGATAATTTACCATTAAGTTG
Found at i:4253928 original size:22 final size:22
Alignment explanation
Indices: 4253903--4253944 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
4253893 AATGATTTCT
4253903 ATTAAATTATTGATAATTTACC
1 ATTAAATTATTGATAATTTACC
* * *
4253925 ATTAAGTTGTTGATGATTTA
1 ATTAAATTATTGATAATTTA
4253945 TTATAAATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.36, C:0.05, G:0.12, T:0.48
Consensus pattern (22 bp):
ATTAAATTATTGATAATTTACC
Found at i:4256868 original size:332 final size:333
Alignment explanation
Indices: 4256262--4257198 Score: 1293
Period size: 332 Copynumber: 2.8 Consensus size: 333
4256252 AACTTGTTTT
* * * * *
4256262 CAAGATCAAGCGTTTACCACTACACTAAAAGCTATAGCTGATAGTAAAGGTGCAACTCTATTTTT
1 CAAGATCAAGCGCTTACCACTACACCAAAAGCTATAGCTGATAGTGAAGGTGTAACTCTATTTTC
* * * * *
4256327 TTATTTTCTTTTGGTAGCGTAAAGCCCCATACTAAGCGACAGGTGGACATAAGGGGCTTTGTAAA
66 TTATTCTCTTTTAGTAGCGCAAAGCCCCATACTAAGCGACAGGTGGACATAAGGGGCTTCGCAAA
* * * * * * *
4256392 ACCTTTATGGGATACCTCACCCATTAGGCTTTGGCAAGTTGGGTTGCCATACACCGAAATTTGAT
131 GCCTTCATGGGATACCTCACCCATTGGGCCTCGACAAGTTGGGTTGCCATACACCAAAATTTGAT
* * * * * * *
4256457 CCACCATGGGATACCTCACCCAGATGAATTGATATGCCAAGTCCTTAAGGAAGATCGTTGGACCC
196 CCATCATGGGATACCTCACCCAGATGAATCGACATACCGAGTCCCTAAGGGAGATCGTTGGACCC
* * * * * *
4256522 CATAATCCAACAATC-TCTCCTCCAGCGGCACTTGGGGGACTTGAACCTATAATCTCGCT-TGAT
261 CATAATCCAACAATCTTC-CCCCCAGCGGCACCTGAGAGACTTGAACCTACAACCTCGCTCTGAT
4256585 ACCAATTTC
325 ACCAATTTC
4256594 CAAGATCAAGCGCTTACCACTACACCAAAAGCTATAGCTGATAGTGAAGGTGTAACTCTATTTTC
1 CAAGATCAAGCGCTTACCACTACACCAAAAGCTATAGCTGATAGTGAAGGTGTAACTCTATTTTC
* *
4256659 TTATTCTCTTTTAGTAGCGCAAAACCCCGTACTAAGCGACAGGTGGACATAAGGGGCTTCGCAAA
66 TTATTCTCTTTTAGTAGCGCAAAGCCCCATACTAAGCGACAGGTGGACATAAGGGGCTTCGCAAA
* *
4256724 GCCTTCATGGGATACCTCACCCATTGGGCCTCGACAAGTTGGGTTGTCATACATCAAAATTTGAT
131 GCCTTCATGGGATACCTCACCCATTGGGCCTCGACAAGTTGGGTTGCCATACACCAAAATTTGAT
* * * * *
4256789 CCATCATGAGATACCTCACCTAGATGAATCGACATACCGAGTCCGTAAGGGAGACCGCTGGACCC
196 CCATCATGGGATACCTCACCCAGATGAATCGACATACCGAGTCCCTAAGGGAGATCGTTGGACCC
*
4256854 CATAATCCAACAATCTTCCCCCCAGCGGCACCTGAGAGACTTGAACCTACAACCTTGCTCTGATA
261 CATAATCCAACAATCTTCCCCCCAGCGGCACCTGAGAGACTTGAACCTACAACCTCGCTCTGATA
*
4256919 CCAATTTT
326 CCAATTTC
* * * * * * *
4256927 TAAGATCAAGCGCTTACCACAACACCGAAAGCTATAACTCATAGTGAATGTCTAACTCTATTTTC
1 CAAGATCAAGCGCTTACCACTACACCAAAAGCTATAGCTGATAGTGAAGGTGTAACTCTATTTTC
* *
4256992 TTATTCTCTTTTAGTAGCGCAGAGCCCTATACTAAGCGACAGGTGGACATAAGGGGCTTCGCAAA
66 TTATTCTCTTTTAGTAGCGCAAAGCCCCATACTAAGCGACAGGTGGACATAAGGGGCTTCGCAAA
* ** * * *
4257057 GCCTTCATGGGATACCTCACCTATTGCACCTCGACAGGTTGGGTTACCATACACCAGAATTTGAT
131 GCCTTCATGGGATACCTCACCCATTGGGCCTCGACAAGTTGGGTTGCCATACACCAAAATTTGAT
* * * * *
4257122 CCATCATGGGATACCTCACCCATATGAATCGACATACTGAGTCCCTAAGAGAGATTGTTGGACAC
196 CCATCATGGGATACCTCACCCAGATGAATCGACATACCGAGTCCCTAAGGGAGATCGTTGGACCC
*
4257187 TATAATCCAACA
261 CATAATCCAACA
4257199 CGTTATTAAT
Statistics
Matches: 533, Mismatches: 70, Indels: 3
0.88 0.12 0.00
Matches are distributed among these distances:
332 277 0.52
333 256 0.48
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (333 bp):
CAAGATCAAGCGCTTACCACTACACCAAAAGCTATAGCTGATAGTGAAGGTGTAACTCTATTTTC
TTATTCTCTTTTAGTAGCGCAAAGCCCCATACTAAGCGACAGGTGGACATAAGGGGCTTCGCAAA
GCCTTCATGGGATACCTCACCCATTGGGCCTCGACAAGTTGGGTTGCCATACACCAAAATTTGAT
CCATCATGGGATACCTCACCCAGATGAATCGACATACCGAGTCCCTAAGGGAGATCGTTGGACCC
CATAATCCAACAATCTTCCCCCCAGCGGCACCTGAGAGACTTGAACCTACAACCTCGCTCTGATA
CCAATTTC
Found at i:4257276 original size:22 final size:22
Alignment explanation
Indices: 4257249--4257302 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
4257239 AAATTATGAA
*
4257249 TGATTTACTATTATATTTTTAT
1 TGATTTACTATTATATTATTAT
* *
4257271 AT-ATTTGCTATTATGTTATTAT
1 -TGATTTACTATTATATTATTAT
4257293 TGATTTACTA
1 TGATTTACTA
4257303 CTTCATTTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 1 0.04
22 24 0.92
23 1 0.04
ACGTcount: A:0.28, C:0.06, G:0.07, T:0.59
Consensus pattern (22 bp):
TGATTTACTATTATATTATTAT
Found at i:4257393 original size:21 final size:21
Alignment explanation
Indices: 4257327--4257397 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
4257317 ATATACTACA
*
4257327 AAATTATCACTGATTTATCATT
1 AAATTATTACTGATTTAT-ATT
* * * *
4257349 AAATTTTTA-TGGTTCACTACT
1 AAATTATTACTGATTTA-TATT
4257370 AAATTATTACTGATTTATATT
1 AAATTATTACTGATTTATATT
4257391 AAATTAT
1 AAATTAT
4257398 GCATGACTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
21 25 0.66
22 13 0.34
ACGTcount: A:0.37, C:0.10, G:0.06, T:0.48
Consensus pattern (21 bp):
AAATTATTACTGATTTATATT
Found at i:4257432 original size:22 final size:22
Alignment explanation
Indices: 4257407--4257463 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
4257397 TGCATGACTT
* *
4257407 ACTATTAAGTTATCACTAATTA
1 ACTATTAAGCTATCAATAATTA
*
4257429 ACTATTAAGCTATCAATAATTT
1 ACTATTAAGCTATCAATAATTA
* *
4257451 ATTATTAAACTAT
1 ACTATTAAGCTAT
4257464 ACTAATTTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (22 bp):
ACTATTAAGCTATCAATAATTA
Found at i:4257502 original size:22 final size:22
Alignment explanation
Indices: 4257477--4257526 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
4257467 AATTTACTTT
*
4257477 TAAATTTTTAATGATTAACTAC
1 TAAATTGTTAATGATTAACTAC
* * *
4257499 TAAATTGTTAATTATTTATTAC
1 TAAATTGTTAATGATTAACTAC
4257521 TAAATT
1 TAAATT
4257527 ATCATTAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.50
Consensus pattern (22 bp):
TAAATTGTTAATGATTAACTAC
Found at i:4257621 original size:22 final size:22
Alignment explanation
Indices: 4257593--4257657 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 22
4257583 AAGTTGAAAT
*
4257593 TGATTTACTAATAAATTATCAC
1 TGATTTACTAATAAGTTATCAC
* * *
4257615 TGATTTACTATTAAGCTATCAT
1 TGATTTACTAATAAGTTATCAC
* *
4257637 TGATTTATTAGTAAGTTATCA
1 TGATTTACTAATAAGTTATCA
4257658 ATAATTAAAG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.35, C:0.11, G:0.09, T:0.45
Consensus pattern (22 bp):
TGATTTACTAATAAGTTATCAC
Found at i:4257868 original size:11 final size:11
Alignment explanation
Indices: 4257845--4257900 Score: 55
Period size: 11 Copynumber: 5.3 Consensus size: 11
4257835 CATTTACTGT
*
4257845 TAAGTTATCAC
1 TAAGTTATTAC
*
4257856 TAATTTATTAC
1 TAAGTTATTAC
4257867 TAAGTTATTGA-
1 TAAGTTATT-AC
*
4257878 TAA-TTACTAC
1 TAAGTTATTAC
4257888 TAAGTTA-TAC
1 TAAGTTATTAC
4257898 TAA
1 TAA
4257901 TTACATTTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
9 1 0.03
10 13 0.34
11 23 0.61
12 1 0.03
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (11 bp):
TAAGTTATTAC
Found at i:4257870 original size:22 final size:21
Alignment explanation
Indices: 4257836--4257902 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 21
4257826 ATTATCATTC
**
4257836 ATTTACTGTTAAGTTATCACTA
1 ATTTACTACTAAGTTAT-ACTA
*
4257858 ATTTATTACTAAGTTATTGA-TA
1 ATTTACTACTAAGTTA-T-ACTA
4257880 A-TTACTACTAAGTTATACTA
1 ATTTACTACTAAGTTATACTA
4257900 ATT
1 ATT
4257903 ACATTTAAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
19 1 0.03
20 4 0.11
21 14 0.38
22 16 0.43
23 2 0.05
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.46
Consensus pattern (21 bp):
ATTTACTACTAAGTTATACTA
Found at i:4261369 original size:19 final size:19
Alignment explanation
Indices: 4261345--4261386 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
4261335 ACATTTTTTT
4261345 AATCTAATAATAACAAAA-A
1 AATCTAATAATAA-AAAAGA
4261364 AATCTAATAATAAAAAAGA
1 AATCTAATAATAAAAAAGA
4261383 AATC
1 AATC
4261387 ATTTAAGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.67, C:0.10, G:0.02, T:0.21
Consensus pattern (19 bp):
AATCTAATAATAAAAAAGA
Found at i:4263742 original size:13 final size:14
Alignment explanation
Indices: 4263724--4263752 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
4263714 TATTAACTTA
4263724 TTTTAGTA-ATATT
1 TTTTAGTATATATT
4263737 TTTTAGTATATATT
1 TTTTAGTATATATT
4263751 TT
1 TT
4263753 AATAAGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTAGTATATATT
Found at i:4268168 original size:25 final size:25
Alignment explanation
Indices: 4268138--4268204 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 25
4268128 AGCCATGTTA
*
4268138 TTTGTTTCCTTGTTCTTTCTTCAT-G
1 TTTGTTTCCTTGTTCTTTCCT-ATCG
* *
4268163 TTTGTTGTCCCTCTT-TTTCCTATCG
1 TTTGTT-TCCTTGTTCTTTCCTATCG
4268188 TTTGTTTTCCTTGTTCT
1 TTTG-TTTCCTTGTTCT
4268205 AAAGGTGTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
24 2 0.06
25 22 0.67
26 9 0.27
ACGTcount: A:0.03, C:0.22, G:0.12, T:0.63
Consensus pattern (25 bp):
TTTGTTTCCTTGTTCTTTCCTATCG
Found at i:4272038 original size:2 final size:2
Alignment explanation
Indices: 4272031--4272061 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
4272021 AACATGAATT
*
4272031 TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4272062 TACAATACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4272687 original size:15 final size:15
Alignment explanation
Indices: 4272667--4272696 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
4272657 GAGAAGAGTT
*
4272667 AAATTTATTTTTTAA
1 AAATTTATATTTTAA
4272682 AAATTTATATTTTAA
1 AAATTTATATTTTAA
4272697 TAAAATAATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
AAATTTATATTTTAA
Found at i:4272965 original size:23 final size:23
Alignment explanation
Indices: 4272937--4272990 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
4272927 CAAAAATATA
4272937 ATTTTATATATTTTC-TTTCTTTCT
1 ATTTTAT-TATTTTCTTTTCTTT-T
*
4272961 -TTTTATTTTTTTCTTTTCTTTT
1 ATTTTATTATTTTCTTTTCTTTT
4272983 ATTTTATT
1 ATTTTATT
4272991 CTTCCTCTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 7 0.26
23 20 0.74
ACGTcount: A:0.13, C:0.09, G:0.00, T:0.78
Consensus pattern (23 bp):
ATTTTATTATTTTCTTTTCTTTT
Found at i:4272975 original size:18 final size:18
Alignment explanation
Indices: 4272945--4272993 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
4272935 TAATTTTATA
4272945 TATTTTCTTTC-TTTCTTTT
1 TATTTT-TTTCTTTTC-TTT
4272964 TATTTTTTTCTTTTCTTT
1 TATTTTTTTCTTTTCTTT
*
4272982 TATTTTATTCTT
1 TATTTTTTTCTT
4272994 CCTCTAGAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 18 0.64
19 10 0.36
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (18 bp):
TATTTTTTTCTTTTCTTT
Found at i:4273296 original size:32 final size:32
Alignment explanation
Indices: 4273228--4273298 Score: 99
Period size: 32 Copynumber: 2.2 Consensus size: 32
4273218 GAAAAGAGGG
* *
4273228 AAAAAAAGGTAAAATGGAAAAAATAAAGAAAC
1 AAAATAAGGGAAAATGGAAAAAATAAAGAAAC
*
4273260 AAAATAAGGGAAAATGGAAAAAATAGAA-AAAT
1 AAAATAAGGGAAAATGGAAAAAATA-AAGAAAC
4273292 AAAATAA
1 AAAATAA
4273299 AAGAGGAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
32 33 0.94
33 2 0.06
ACGTcount: A:0.72, C:0.01, G:0.15, T:0.11
Consensus pattern (32 bp):
AAAATAAGGGAAAATGGAAAAAATAAAGAAAC
Found at i:4273310 original size:15 final size:16
Alignment explanation
Indices: 4273292--4273325 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
4273282 ATAGAAAAAT
4273292 AAAATAAAAGA-GGAA
1 AAAATAAAAGAGGGAA
*
4273307 AAAATAAAATAGGGAA
1 AAAATAAAAGAGGGAA
4273323 AAA
1 AAA
4273326 GAAATAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.09
Consensus pattern (16 bp):
AAAATAAAAGAGGGAA
Found at i:4273778 original size:12 final size:11
Alignment explanation
Indices: 4273760--4273789 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
4273750 CTATATTTCT
4273760 TATATTTATTA
1 TATATTTATTA
4273771 TAATATTTATTA
1 T-ATATTTATTA
4273783 TATATTT
1 TATATTT
4273790 TTTTCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (11 bp):
TATATTTATTA
Found at i:4274163 original size:20 final size:21
Alignment explanation
Indices: 4274126--4274165 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
4274116 TAAACAAATA
*
4274126 AATCCTAAACGAACATAAACC
1 AATCCTAAACAAACATAAACC
*
4274147 AATCC-AAACAAATATAAAC
1 AATCCTAAACAAACATAAAC
4274166 AAACCTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.57, C:0.25, G:0.03, T:0.15
Consensus pattern (21 bp):
AATCCTAAACAAACATAAACC
Found at i:4274894 original size:2 final size:2
Alignment explanation
Indices: 4274889--4274917 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4274879 TATATATATA
4274889 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
4274918 ATTAATTGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:4276161 original size:14 final size:14
Alignment explanation
Indices: 4276144--4276180 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
4276134 GGTATTAAAA
4276144 ATAATATTATTAAT
1 ATAATATTATTAAT
*
4276158 ATAATATAATTAAT
1 ATAATATTATTAAT
*
4276172 ATAAAATTA
1 ATAATATTA
4276181 ACTTAATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
ATAATATTATTAAT
Found at i:4276188 original size:16 final size:14
Alignment explanation
Indices: 4276152--4276194 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
4276142 AAATAATATT
*
4276152 ATTAATATAATATA
1 ATTAATATAAAATA
4276166 ATTAATATAAAATTA
1 ATTAATATAAAA-TA
4276181 ACTTAATAATAAAA
1 A-TTAAT-ATAAAA
4276195 CATATATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 11 0.44
15 3 0.12
16 5 0.20
17 6 0.24
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (14 bp):
ATTAATATAAAATA
Found at i:4276420 original size:18 final size:18
Alignment explanation
Indices: 4276395--4276444 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
4276385 CTAAATATTA
*
4276395 AAAAAAAAAAAAGTAAAT
1 AAAAAAAAAAAAGTAAAG
* **
4276413 AGAAAAAATTAAGTAAAG
1 AAAAAAAAAAAAGTAAAG
4276431 AAAAAGAAAAAAAG
1 AAAAA-AAAAAAAG
4276445 ATAGCAAATG
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
18 18 0.75
19 6 0.25
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (18 bp):
AAAAAAAAAAAAGTAAAG
Found at i:4278957 original size:24 final size:23
Alignment explanation
Indices: 4278930--4279006 Score: 91
Period size: 24 Copynumber: 3.2 Consensus size: 23
4278920 ACTTTTGTTA
*
4278930 AAACTAGAATGGAAACTAGATCTG
1 AAACTAGAATGGAAGCTAGAT-TG
* * *
4278954 AAACTAGATTTGAAGCTGGAGTTG
1 AAACTAGAATGGAAGCTAGA-TTG
4278978 AAACTAGAATGGAAGCTAGATTTG
1 AAACTAGAATGGAAGCTAGA-TTG
4279002 AAACT
1 AAACT
4279007 CGATTTGTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
24 43 0.98
25 1 0.02
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.25
Consensus pattern (23 bp):
AAACTAGAATGGAAGCTAGATTG
Found at i:4278967 original size:48 final size:48
Alignment explanation
Indices: 4278912--4279013 Score: 132
Period size: 48 Copynumber: 2.1 Consensus size: 48
4278902 ATATTGACTG
***
4278912 GATTTGAAACTTTTGTTAAAACTAGAATGGAAACTAGATCTGAAACTA
1 GATTTGAAACTGGAGTTAAAACTAGAATGGAAACTAGATCTGAAACTA
* * * * *
4278960 GATTTGAAGCTGGAGTTGAAACTAGAATGGAAGCTAGATTTGAAACTC
1 GATTTGAAACTGGAGTTAAAACTAGAATGGAAACTAGATCTGAAACTA
4279008 GATTTG
1 GATTTG
4279014 TTAAAACTAG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.37, C:0.10, G:0.23, T:0.30
Consensus pattern (48 bp):
GATTTGAAACTGGAGTTAAAACTAGAATGGAAACTAGATCTGAAACTA
Found at i:4279011 original size:12 final size:12
Alignment explanation
Indices: 4278930--4279027 Score: 79
Period size: 12 Copynumber: 7.9 Consensus size: 12
4278920 ACTTTTGTTA
* *
4278930 AAACTAGAATGG
1 AAACTAGATTTG
*
4278942 AAACTAGATCTG
1 AAACTAGATTTG
4278954 AAACTAGATTTG
1 AAACTAGATTTG
* * *
4278966 AAGCTGGAGTTG
1 AAACTAGATTTG
* *
4278978 AAACTAGAATGG
1 AAACTAGATTTG
*
4278990 AAGCTAGATTTG
1 AAACTAGATTTG
*
4279002 AAACTCGATTTG
1 AAACTAGATTTG
4279014 TTAAAACTAGATTT
1 ---AAACTAGATTT
4279028 AGGGTTTATA
Statistics
Matches: 66, Mismatches: 17, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
12 56 0.85
15 10 0.15
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (12 bp):
AAACTAGATTTG
Found at i:4280591 original size:25 final size:24
Alignment explanation
Indices: 4280547--4280618 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
4280537 ACGATGATAT
*
4280547 GATATTAAAT-AATAAAATTAGAAA
1 GATATTAATTAAATAAAATTA-AAA
4280571 -ATATTAATTAAATCAAAATTAAAA
1 GATATTAATTAAAT-AAAATTAAAA
* *
4280595 GATAATAATTATATAAATATTAAA
1 GATATTAATTAAATAAA-ATTAAA
4280619 TAAAAAATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
23 8 0.20
24 9 0.22
25 24 0.59
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (24 bp):
GATATTAATTAAATAAAATTAAAA
Found at i:4280801 original size:21 final size:21
Alignment explanation
Indices: 4280780--4280817 Score: 62
Period size: 19 Copynumber: 1.9 Consensus size: 21
4280770 TTCATATAAT
4280780 ATAATATT-TT-AATTATTAA
1 ATAATATTGTTAAATTATTAA
4280799 ATAATATTGTTAAATTATT
1 ATAATATTGTTAAATTATT
4280818 GGATATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 2 0.12
21 7 0.41
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (21 bp):
ATAATATTGTTAAATTATTAA
Found at i:4281106 original size:21 final size:18
Alignment explanation
Indices: 4281053--4281094 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
4281043 TTTAATACTA
*
4281053 AATATT-AATTTTATTAAT
1 AATATTCAATTAT-TTAAT
4281071 AATATTCAATTATTTAAT
1 AATATTCAATTATTTAAT
4281089 AATATT
1 AATATT
4281095 AGGAATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 17 0.77
19 5 0.23
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
AATATTCAATTATTTAAT
Found at i:4281249 original size:27 final size:24
Alignment explanation
Indices: 4281222--4281271 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
4281212 ATAATATATT
*
4281222 AATT-AATAATATTATAATTTTAA
1 AATTAAATAATATTATAATATTAA
*
4281245 AATTAAATAATATTATAGTATTAA
1 AATTAAATAATATTATAATATTAA
4281269 AAT
1 AAT
4281272 ATTATATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (24 bp):
AATTAAATAATATTATAATATTAA
Found at i:4285389 original size:17 final size:16
Alignment explanation
Indices: 4285369--4285402 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
4285359 TAGAAACTAG
4285369 ATTAAATAAAAAATAAA
1 ATTAAA-AAAAAATAAA
*
4285386 ATTAAAAAGAAATAAA
1 ATTAAAAAAAAATAAA
4285402 A
1 A
4285403 GTAGAGAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (16 bp):
ATTAAAAAAAAATAAA
Found at i:4285905 original size:2 final size:2
Alignment explanation
Indices: 4285898--4285933 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
4285888 TATCTGGATG
*
4285898 TA TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4285934 AGATAAGTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:4287452 original size:18 final size:18
Alignment explanation
Indices: 4287401--4287444 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
4287391 AATTTAGAGG
4287401 AAAAACTTTAAATTTGAT
1 AAAAACTTTAAATTTGAT
*
4287419 CAAAACTTTAAATTTGAT
1 AAAAACTTTAAATTTGAT
4287437 AAAAACTT
1 AAAAACTT
4287445 GAATTTTGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (18 bp):
AAAAACTTTAAATTTGAT
Found at i:4289525 original size:18 final size:19
Alignment explanation
Indices: 4289491--4289526 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
4289481 TTTTCCTTCA
4289491 GCTTTTTTTTCTCTCTTTT
1 GCTTTTTTTTCTCTCTTTT
4289510 GCTTTTTTTTCT-TCTTT
1 GCTTTTTTTTCTCTCTTT
4289527 CATACACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.00, C:0.19, G:0.06, T:0.75
Consensus pattern (19 bp):
GCTTTTTTTTCTCTCTTTT
Found at i:4291829 original size:28 final size:29
Alignment explanation
Indices: 4291780--4291835 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
4291770 TACTACAGAG
**
4291780 TTTTTTCTTTTTAATT-CGTTTTGTTGAC
1 TTTTTTCTTTTTAATTAATTTTTGTTGAC
4291808 TTTTTATC-TTTTAATTAATTTTTGTTGA
1 TTTTT-TCTTTTTAATTAATTTTTGTTGA
4291836 TAATTTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.16, C:0.07, G:0.09, T:0.68
Consensus pattern (29 bp):
TTTTTTCTTTTTAATTAATTTTTGTTGAC
Found at i:4292093 original size:21 final size:21
Alignment explanation
Indices: 4292069--4292117 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
4292059 GATAAATATG
4292069 ATTTAATAAATTAACTAGAGA
1 ATTTAATAAATTAACTAGAGA
* * * *
4292090 ATTTATTACATTAGCTTGAGA
1 ATTTAATAAATTAACTAGAGA
4292111 ATTTAAT
1 ATTTAAT
4292118 TTATTGGCTA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (21 bp):
ATTTAATAAATTAACTAGAGA
Found at i:4303807 original size:12 final size:13
Alignment explanation
Indices: 4303790--4303818 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
4303780 ATAGCATCTA
4303790 TTTTACCTATT-T
1 TTTTACCTATTGT
4303802 TTTTACCTATTGT
1 TTTTACCTATTGT
4303815 TTTT
1 TTTT
4303819 GTATAATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.14, C:0.14, G:0.03, T:0.69
Consensus pattern (13 bp):
TTTTACCTATTGT
Found at i:4304868 original size:167 final size:167
Alignment explanation
Indices: 4304592--4304914 Score: 540
Period size: 167 Copynumber: 1.9 Consensus size: 167
4304582 GCCATCAAAA
*
4304592 ACTTGATAGGGATTACGAGTACATAGGCCTTTTAAGTAATAAAAGTGGTAAGTTTAGTATCGTCC
1 ACTTGATAGGGATTACGAGTACATAGGCCTTTTAAGTAATAAAAGTGGTAAGTTTAGTATCATCC
** * *
4304657 TGCGAAGATTGAATATTCTAAGTACCACTTATCAATATACTACAACTATATTTAGCTCGATTGAA
66 CACAAAGATTGAATATTCTAAGTACCACTTATCAATATACTACAACTATATTTAGCTCAATTGAA
4304722 GTTAAAAAAAGTAACCTACACTACTCTTATGCATTAC
131 GTTAAAAAAAGTAACCTACACTACTCTTATGCATTAC
* *
4304759 ACTTGATAGGGATTGCGAGTATATAGG-CTGTTTAAGTAATAAAAGTGGTAAGTTTAGTATCATC
1 ACTTGATAGGGATTACGAGTACATAGGCCT-TTTAAGTAATAAAAGTGGTAAGTTTAGTATCATC
*
4304823 CCACAAAGATTGAATATTCTAAGTACCATTTATCAATATACTACAACTATATTTAGCTCAATTGA
65 CCACAAAGATTGAATATTCTAAGTACCACTTATCAATATACTACAACTATATTTAGCTCAATTGA
* *
4304888 AGTTCAAAAGAGTAACCTACACTACTC
130 AGTTAAAAAAAGTAACCTACACTACTC
4304915 ATATACTGAA
Statistics
Matches: 145, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
166 2 0.01
167 143 0.99
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (167 bp):
ACTTGATAGGGATTACGAGTACATAGGCCTTTTAAGTAATAAAAGTGGTAAGTTTAGTATCATCC
CACAAAGATTGAATATTCTAAGTACCACTTATCAATATACTACAACTATATTTAGCTCAATTGAA
GTTAAAAAAAGTAACCTACACTACTCTTATGCATTAC
Found at i:4306843 original size:20 final size:19
Alignment explanation
Indices: 4306797--4306843 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
4306787 AAAATGAAAT
4306797 TAAAAATAATAAAAATTAG
1 TAAAAATAATAAAAATTAG
***
4306816 TGTGAATAATAAAAAATTAG
1 TAAAAATAAT-AAAAATTAG
4306836 TAAAAATA
1 TAAAAATA
4306844 TAAGAAAGGA
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.28
Consensus pattern (19 bp):
TAAAAATAATAAAAATTAG
Found at i:4309673 original size:18 final size:18
Alignment explanation
Indices: 4309650--4309687 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
4309640 TCATTTTCAC
*
4309650 TAAAAAAGAAAAACCAAT
1 TAAAAAAGAAAAACAAAT
*
4309668 TAAAAATGAAAAACAAAT
1 TAAAAAAGAAAAACAAAT
4309686 TA
1 TA
4309688 GAAACAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.71, C:0.08, G:0.05, T:0.16
Consensus pattern (18 bp):
TAAAAAAGAAAAACAAAT
Found at i:4311690 original size:14 final size:15
Alignment explanation
Indices: 4311665--4311697 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
4311655 AAAAAGAATT
4311665 AGAAACTAAAAAAAA
1 AGAAACTAAAAAAAA
4311680 AGAAA-TAAAAAAAA
1 AGAAACTAAAAAAAA
4311694 AGAA
1 AGAA
4311698 TTTGAGACTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.82, C:0.03, G:0.09, T:0.06
Consensus pattern (15 bp):
AGAAACTAAAAAAAA
Found at i:4320941 original size:48 final size:48
Alignment explanation
Indices: 4320766--4320951 Score: 169
Period size: 48 Copynumber: 3.8 Consensus size: 48
4320756 GTTTTGAGAA
* * * *
4320766 AAGATGAAAATTCTAAAGTTATTGAGCCT-TGACTTAAAGGAGCTTTTCC
1 AAGATGAAATTTTTAAAGTCATTGAGCCTCTG-CTTAGAGGAGC-TTTCC
** * * * *
4320815 AA-AAAAAATTTTCTTAAAGTCGTTGAGCCTTTGTTTAGAGGAGATTTTCC
1 AAGATGAAA-TTT-TTAAAGTCATTGAGCCTCTGCTTAGAGGAG-CTTTCC
* ** * *
4320865 ACGATGAAATTTTTAAAGTTGTTAAGCCTCTGCTTAGAGGAGCTTTCT
1 AAGATGAAATTTTTAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTCC
*
4320913 AAGATGAAATTTTTAAAGTCATTGAGCCTCTACTTAGAG
1 AAGATGAAATTTTTAAAGTCATTGAGCCTCTGCTTAGAG
4320952 AAGTTTTTTA
Statistics
Matches: 109, Mismatches: 23, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
48 42 0.39
49 30 0.28
50 31 0.28
51 6 0.06
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (48 bp):
AAGATGAAATTTTTAAAGTCATTGAGCCTCTGCTTAGAGGAGCTTTCC
Found at i:4320964 original size:34 final size:35
Alignment explanation
Indices: 4320922--4320998 Score: 120
Period size: 34 Copynumber: 2.2 Consensus size: 35
4320912 TAAGATGAAA
4320922 TTTTTAAAGTCATTGAGCCTCTACTTAGAGAAG-T
1 TTTTTAAAGTCATTGAGCCTCTACTTAGAGAAGCT
** *
4320956 TTTTTAAAGTTTTTGAGCCTCTACTTAGAGGAGCT
1 TTTTTAAAGTCATTGAGCCTCTACTTAGAGAAGCT
4320991 TTTTTAAA
1 TTTTTAAA
4320999 TTTTCAAAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
34 30 0.77
35 9 0.23
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (35 bp):
TTTTTAAAGTCATTGAGCCTCTACTTAGAGAAGCT
Found at i:4321282 original size:14 final size:14
Alignment explanation
Indices: 4321263--4321289 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
4321253 TTATTATATA
4321263 TTTCTTTTTTTTCC
1 TTTCTTTTTTTTCC
4321277 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
4321290 TTTTTTGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTCTTTTTTTTCC
Found at i:4321550 original size:20 final size:19
Alignment explanation
Indices: 4321511--4321554 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
4321501 AGAATCCATG
* *
4321511 AAAAAAAACCTTGCTAAAA
1 AAAAAAAACCTAGATAAAA
4321530 ATAAAAAAACCTAGATTAAAA
1 A-AAAAAAACCTAGA-TAAAA
4321551 AAAA
1 AAAA
4321555 GGGGTTCTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 1 0.05
20 14 0.67
21 6 0.29
ACGTcount: A:0.68, C:0.11, G:0.05, T:0.16
Consensus pattern (19 bp):
AAAAAAAACCTAGATAAAA
Found at i:4322970 original size:19 final size:18
Alignment explanation
Indices: 4322935--4323000 Score: 55
Period size: 18 Copynumber: 3.5 Consensus size: 18
4322925 TCTAAAATGA
4322935 AATAAAAA-AAGTAAAATT
1 AATAAAAATAA-TAAAATT
4322953 AATAAAAATAATACAAATT
1 AATAAAAATAATA-AAATT
*
4322972 AGTGTAAATAATAA-AAAATT
1 A--ATAAA-AATAATAAAATT
*
4322992 AGTAAAAAT
1 AATAAAAAT
4323001 GTAAGAAAAG
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
17 3 0.07
18 15 0.36
19 8 0.19
20 6 0.14
21 5 0.12
22 5 0.12
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.26
Consensus pattern (18 bp):
AATAAAAATAATAAAATT
Found at i:4333927 original size:17 final size:17
Alignment explanation
Indices: 4333905--4333962 Score: 59
Period size: 15 Copynumber: 3.5 Consensus size: 17
4333895 ATATGTTTTC
4333905 AAACAATAATAAAATTA
1 AAACAATAATAAAATTA
* *
4333922 AAACAAT-A-AACATTT
1 AAACAATAATAAAATTA
*
4333937 AAA-AATAATAAAAATA
1 AAACAATAATAAAATTA
4333953 ATAACAATAA
1 A-AACAATAA
4333963 CAAACATAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
14 3 0.09
15 9 0.28
16 6 0.19
17 9 0.28
18 5 0.16
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.22
Consensus pattern (17 bp):
AAACAATAATAAAATTA
Found at i:4335060 original size:2 final size:2
Alignment explanation
Indices: 4335053--4335143 Score: 60
Period size: 2 Copynumber: 46.0 Consensus size: 2
4335043 TATTGTTGTT
* ** * *
4335053 TA TA TA TA CT- TA TA TA CA TA TA TA CG TA TA TA TA TA TA CA CA
1 TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * ** * *
4335095 CA CA TA TA TA TA GC TT TA TA TA TA CA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4335137 TA -A TA TA
1 TA TA TA TA
4335144 GCTGTGGATG
Statistics
Matches: 71, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
1 2 0.03
2 68 0.96
3 1 0.01
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.42
Consensus pattern (2 bp):
TA
Found at i:4336062 original size:14 final size:15
Alignment explanation
Indices: 4336033--4336077 Score: 65
Period size: 14 Copynumber: 3.0 Consensus size: 15
4336023 CAAGACGAAG
4336033 AAATTATAAATATTA
1 AAATTATAAATATTA
*
4336048 AAATT-TAAATTTTA
1 AAATTATAAATATTA
4336062 AAATTATTAAATATTA
1 AAATTA-TAAATATTA
4336078 TTTTTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 13 0.50
15 5 0.19
16 8 0.31
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATTATAAATATTA
Found at i:4336715 original size:24 final size:24
Alignment explanation
Indices: 4336670--4336712 Score: 65
Period size: 21 Copynumber: 1.9 Consensus size: 24
4336660 AACGTTTAAT
4336670 TTTAATTTAAATAAAATAAATACA
1 TTTAATTTAAATAAAATAAATACA
4336694 TTTAATTT---TAAAATAAATA
1 TTTAATTTAAATAAAATAAATA
4336713 ATAGTAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.58
24 8 0.42
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (24 bp):
TTTAATTTAAATAAAATAAATACA
Found at i:4340576 original size:117 final size:116
Alignment explanation
Indices: 4340368--4340598 Score: 372
Period size: 117 Copynumber: 2.0 Consensus size: 116
4340358 GAGTGAACAA
* * * *
4340368 TACCTCACAAGGGTGTGAATCGTGACGGAAGGCTGATCTGGGACGTCGGAACGGTGAATGCTCGG
1 TACCTCACAAGGGTGTAAACCGTGACGGAAGGCTGATCTGGGACGCCGGAACGGTGAATGCCCGG
* *
4340433 GTCTCGGAGCAGCGCGGGTTCGGAGCTTAAGTCTCGACCCGTGACAAGTAT
66 GTCCCGGAGCAGCGCGGGTTCAGAGCTTAAGTCTCGACCCGTGACAAGTAT
* *
4340484 TACCTCACAAGGGTGTAAACCGTGACAGGAAGGCTGATTTGGGACGCCGGAAGGGTGAATGCCCG
1 TACCTCACAAGGGTGTAAACCGTGAC-GGAAGGCTGATCTGGGACGCCGGAACGGTGAATGCCCG
*
4340549 GGTCCCGGAGCCGCGCGGGTTCAGAGCTTAAGTCTCGACCCGTGACAAGT
65 GGTCCCGGAGCAGCGCGGGTTCAGAGCTTAAGTCTCGACCCGTGACAAGT
4340599 GGTATCAGAG
Statistics
Matches: 105, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
116 24 0.23
117 81 0.77
ACGTcount: A:0.22, C:0.24, G:0.35, T:0.19
Consensus pattern (116 bp):
TACCTCACAAGGGTGTAAACCGTGACGGAAGGCTGATCTGGGACGCCGGAACGGTGAATGCCCGG
GTCCCGGAGCAGCGCGGGTTCAGAGCTTAAGTCTCGACCCGTGACAAGTAT
Found at i:4348067 original size:2 final size:2
Alignment explanation
Indices: 4348060--4348100 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
4348050 AACAATAAAC
* * *
4348060 AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT TT AT AT GT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4348101 ACCAAGTTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:4369496 original size:2 final size:2
Alignment explanation
Indices: 4369484--4369550 Score: 55
Period size: 2 Copynumber: 34.0 Consensus size: 2
4369474 CATCCACAGC
* * * **
4369484 TA TA T- TA TA TA TA TA TA TA TA TG TA TG TA TA TA TA AA GC TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
4369525 TA TA GA TA TG TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
4369551 AACAACAATA
Statistics
Matches: 49, Mismatches: 15, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
1 1 0.02
2 48 0.98
ACGTcount: A:0.43, C:0.01, G:0.09, T:0.46
Consensus pattern (2 bp):
TA
Found at i:4371126 original size:20 final size:20
Alignment explanation
Indices: 4371101--4371155 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
4371091 TTAATATGAT
*
4371101 AATATAAATATAAATCTAAC
1 AATATAAATATAAATCAAAC
* *
4371121 AATATAGATATAAATGAAAC
1 AATATAAATATAAATCAAAC
*
4371141 AAGTAAAAATATAAA
1 AA-TATAAATATAAA
4371156 AATTTTAAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 19 0.66
21 10 0.34
ACGTcount: A:0.64, C:0.05, G:0.05, T:0.25
Consensus pattern (20 bp):
AATATAAATATAAATCAAAC
Found at i:4372206 original size:5 final size:5
Alignment explanation
Indices: 4372192--4372275 Score: 71
Period size: 5 Copynumber: 15.8 Consensus size: 5
4372182 ACATAAAGTA
* * *
4372192 AAAAT GAAAAT AAAAT AAAAT AAAAT AAAAT AAATTTT TAAA- AAATT
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAA--AT AAAAT AAAAT
*
4372239 AAAAT CAAAT AAAAT CAAAAAT AAAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT --AAAAT -AAAAT AAAAT AAAA
4372276 ACCTGTGATC
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
4 2 0.03
5 44 0.68
6 11 0.17
7 8 0.12
ACGTcount: A:0.74, C:0.02, G:0.01, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:4372265 original size:23 final size:23
Alignment explanation
Indices: 4372191--4372275 Score: 72
Period size: 23 Copynumber: 3.9 Consensus size: 23
4372181 AACATAAAGT
*
4372191 AAAAATGAAAATAAAATAAAAT-
1 AAAAATAAAAATAAAATAAAATC
*** *
4372213 -AAAAT-AAAAT-AAAT-TTTTA
1 AAAAATAAAAATAAAATAAAATC
* *
4372232 AAAAATTAAAATCAAATAAAATC
1 AAAAATAAAAATAAAATAAAATC
4372255 AAAAATAAAAATAAAATAAAA
1 AAAAATAAAAATAAAATAAAA
4372276 ACCTGTGATC
Statistics
Matches: 49, Mismatches: 9, Indels: 9
0.73 0.13 0.13
Matches are distributed among these distances:
18 1 0.02
19 4 0.08
20 10 0.20
21 10 0.20
22 4 0.08
23 20 0.41
ACGTcount: A:0.74, C:0.02, G:0.01, T:0.22
Consensus pattern (23 bp):
AAAAATAAAAATAAAATAAAATC
Found at i:4372275 original size:41 final size:39
Alignment explanation
Indices: 4372191--4372276 Score: 93
Period size: 41 Copynumber: 2.1 Consensus size: 39
4372181 AACATAAAGT
*
4372191 AAAAATGAAAATAAAATAAAATAAAATAAAATAAATTTTTA
1 AAAAATGAAAATAAAATAAAATAAAATAAAATAAA--TATA
* *
4372232 AAAAATTAAAATCAAATAAAATCAAAAATAAAAATAAA-ATA
1 AAAAATGAAAATAAAATAAAAT--AAAAT-AAAATAAATATA
4372273 AAAA
1 AAAA
4372277 CCTGTGATCG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
41 26 0.67
43 5 0.13
44 8 0.21
ACGTcount: A:0.74, C:0.02, G:0.01, T:0.22
Consensus pattern (39 bp):
AAAAATGAAAATAAAATAAAATAAAATAAAATAAATATA
Found at i:4373088 original size:5 final size:6
Alignment explanation
Indices: 4373072--4373176 Score: 57
Period size: 6 Copynumber: 17.2 Consensus size: 6
4373062 AAGAAAGGAA
* ** * *
4373072 AAAACAT AAAAAT AAAAAT AAAAAT AACAAT GAAAAAT AAAGTT GATAAT
1 AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT AAAAAT AAAAAT
** * * * * * * *
4373122 AATTAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT
*
4373170 AACAAT A
1 AAAAAT A
4373177 GTAGTAGTAG
Statistics
Matches: 85, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
6 76 0.89
7 9 0.11
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.27
Consensus pattern (6 bp):
AAAAAT
Found at i:4373132 original size:3 final size:3
Alignment explanation
Indices: 4373117--4373176 Score: 102
Period size: 3 Copynumber: 20.0 Consensus size: 3
4373107 AATAAAGTTG
*
4373117 ATA ATA ATT ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
4373165 ATA ATA ACA ATA
1 ATA ATA ATA ATA
4373177 GTAGTAGTAG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:4373181 original size:3 final size:3
Alignment explanation
Indices: 4373175--4373239 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
4373165 ATAATAACAA
4373175 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
4373223 TAG TAG TAG TAG TAG TA
1 TAG TAG TAG TAG TAG TA
4373240 TAATAATCGA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.34, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:4380040 original size:17 final size:15
Alignment explanation
Indices: 4380014--4380060 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
4380004 ATTATGAATG
4380014 AATACATTTAGAATTT
1 AATACATTTA-AATTT
4380030 AATACCATTTAAATTT
1 AATA-CATTTAAATTT
*
4380046 AATA-TTTTAAATTT
1 AATACATTTAAATTT
4380060 A
1 A
4380061 TATCTATTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 10 0.34
16 13 0.45
17 6 0.21
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.47
Consensus pattern (15 bp):
AATACATTTAAATTT
Found at i:4380192 original size:2 final size:2
Alignment explanation
Indices: 4380185--4380226 Score: 75
Period size: 2 Copynumber: 20.5 Consensus size: 2
4380175 TTGTATGATC
4380185 AT AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT A
4380227 GAGAGAGAGA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 37 0.95
3 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4381451 original size:20 final size:19
Alignment explanation
Indices: 4381415--4381472 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
4381405 ACATGAGTTT
*
4381415 TATTTATATTATTTTTAATGA
1 TATTTTTATTA-TTTTAAT-A
4381436 -ATTTTTACTTATTTTAATA
1 TATTTTTA-TTATTTTAATA
*
4381455 TATTTTTATTATGTTAAT
1 TATTTTTATTATTTTAAT
4381473 TTCATGTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 10 0.30
20 20 0.61
21 3 0.09
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (19 bp):
TATTTTTATTATTTTAATA
Found at i:4387235 original size:2 final size:2
Alignment explanation
Indices: 4387230--4387259 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
4387220 ATATATATAT
4387230 AG AG AG AG AG AG AG AG AG AG AG AG AG -G AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
4387260 TATATGTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4388473 original size:20 final size:19
Alignment explanation
Indices: 4388437--4388494 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 19
4388427 ACATGAGTTT
*
4388437 TATTTATATTATTTTTAATGA
1 TATTTTTATTA-TTTTAAT-A
4388458 -ATTTTTACTTATTTTAATA
1 TATTTTTA-TTATTTTAATA
*
4388477 TATTTTTATTATGTTAAT
1 TATTTTTATTATTTTAAT
4388495 TTCATGTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 10 0.30
20 20 0.61
21 3 0.09
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (19 bp):
TATTTTTATTATTTTAATA
Found at i:4390874 original size:20 final size:20
Alignment explanation
Indices: 4390849--4390886 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
4390839 AGATTGAAAA
**
4390849 ATCATGGCCTTCAACTACTT
1 ATCATGGCAATCAACTACTT
4390869 ATCATGGCAATCAACTAC
1 ATCATGGCAATCAACTAC
4390887 CCTATAATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.29, G:0.11, T:0.29
Consensus pattern (20 bp):
ATCATGGCAATCAACTACTT
Done.