Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 26 of 77
Found at i:5066547 original size:20 final size:21
Alignment explanation
Indices: 5066524--5066563 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
5066514 TTAATAAAAC
5066524 AATTTTTATCTT-AATTTAAG
1 AATTTTTATCTTAAATTTAAG
*
5066544 AATTTTTATTTTAAATTTAA
1 AATTTTTATCTTAAATTTAA
5066564 TATTAGATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
AATTTTTATCTTAAATTTAAG
Found at i:5067713 original size:3 final size:3
Alignment explanation
Indices: 5067705--5067730 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
5067695 TTATTTTTAT
5067705 ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA AT
5067731 TATTATTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:5068365 original size:2 final size:2
Alignment explanation
Indices: 5068358--5068387 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
5068348 ATATCACGAG
5068358 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5068388 GGTAATTGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5068987 original size:10 final size:10
Alignment explanation
Indices: 5068972--5068997 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
5068962 ATGGTATATT
5068972 AAAAAAATTA
1 AAAAAAATTA
5068982 AAAAAAATTA
1 AAAAAAATTA
5068992 AAAAAA
1 AAAAAA
5068998 GGTGATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAAATTA
Found at i:5069192 original size:2 final size:2
Alignment explanation
Indices: 5069185--5069211 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
5069175 ATTGTTTTTA
5069185 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
5069212 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5069216 original size:2 final size:2
Alignment explanation
Indices: 5069211--5069254 Score: 72
Period size: 2 Copynumber: 22.5 Consensus size: 2
5069201 ATATATATAT
*
5069211 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG TG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
5069252 AG A
1 AG A
5069255 AATTTAACCT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.48, T:0.02
Consensus pattern (2 bp):
AG
Found at i:5070394 original size:15 final size:14
Alignment explanation
Indices: 5070352--5070395 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
5070342 GCCTTAAAAG
*
5070352 ATTTAAATTTAAAT
1 ATTTAATTTTAAAT
*
5070366 ATTTAATCTTAAAT
1 ATTTAATTTTAAAT
*
5070380 ATTTATTTTTTAAAT
1 ATTTA-ATTTTAAAT
5070395 A
1 A
5070396 CCAAATTAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 17 0.68
15 8 0.32
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTAATTTTAAAT
Found at i:5072524 original size:29 final size:29
Alignment explanation
Indices: 5072467--5072525 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
5072457 GTGTATTATA
* *
5072467 TTAATAAAATTATTATTTAATACTTTAAT
1 TTAATAAAAGTATTATTTAATACTATAAT
*
5072496 TTAATAAAAGTATTATATTTATAC-ATAAT
1 TTAATAAAAGTATTAT-TTAATACTATAAT
5072525 T
1 T
5072526 AAGTTGTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (29 bp):
TTAATAAAAGTATTATTTAATACTATAAT
Found at i:5072835 original size:23 final size:23
Alignment explanation
Indices: 5072781--5072837 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
5072771 CCCATTTGGT
*
5072781 GTTTTTTTTTTTTTTTTCGCTTA
1 GTTTTTTTTTTGTTTTTCGCTTA
* ** **
5072804 GATCATTTTTTGTTTTTCTTTTA
1 GTTTTTTTTTTGTTTTTCGCTTA
5072827 GTTTTTTTTTT
1 GTTTTTTTTTT
5072838 AATTATCTAT
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.07, C:0.07, G:0.09, T:0.77
Consensus pattern (23 bp):
GTTTTTTTTTTGTTTTTCGCTTA
Found at i:5074102 original size:23 final size:22
Alignment explanation
Indices: 5074061--5074103 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
5074051 TTTTTTCTTC
**
5074061 TTTTTTTAAGTTTTTTGTTATT
1 TTTTTTTAAGTTTACTGTTATT
5074083 TTTTTGTTAAGTTTACTGTTA
1 TTTTT-TTAAGTTTACTGTTA
5074104 AACTTTTTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.16, C:0.02, G:0.12, T:0.70
Consensus pattern (22 bp):
TTTTTTTAAGTTTACTGTTATT
Found at i:5074125 original size:23 final size:24
Alignment explanation
Indices: 5074082--5074151 Score: 63
Period size: 24 Copynumber: 2.9 Consensus size: 24
5074072 TTTTTGTTAT
*
5074082 TTTTTTGTTA-AGTTTACTGTTAAAC
1 TTTTTTGTTATAGATT--TGTTAAAC
** *
5074107 TTTTTTG-TATAGATTTGTTGGAT
1 TTTTTTGTTATAGATTTGTTAAAC
*
5074130 TTTTTTGTTATATATTTGTTAA
1 TTTTTTGTTATAGATTTGTTAA
5074152 GTTTTTGTTG
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
23 12 0.33
24 13 0.36
25 11 0.31
ACGTcount: A:0.21, C:0.03, G:0.14, T:0.61
Consensus pattern (24 bp):
TTTTTTGTTATAGATTTGTTAAAC
Found at i:5074156 original size:23 final size:23
Alignment explanation
Indices: 5074107--5074157 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
5074097 ACTGTTAAAC
* *
5074107 TTTTTTGTATAGATTTGTTGGAT
1 TTTTTTGTATAGATTTGTTGAAG
*
5074130 TTTTTTGTTATATATTTGTT-AAG
1 TTTTTTG-TATAGATTTGTTGAAG
5074153 TTTTT
1 TTTTT
5074158 GTTGGATTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.18, C:0.00, G:0.16, T:0.67
Consensus pattern (23 bp):
TTTTTTGTATAGATTTGTTGAAG
Found at i:5081546 original size:13 final size:13
Alignment explanation
Indices: 5081528--5081553 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5081518 TCGACGGAAT
5081528 ATTTCATTGGTAA
1 ATTTCATTGGTAA
5081541 ATTTCATTGGTAA
1 ATTTCATTGGTAA
5081554 TGTTATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
ATTTCATTGGTAA
Found at i:5083873 original size:9 final size:9
Alignment explanation
Indices: 5083840--5083892 Score: 53
Period size: 9 Copynumber: 6.4 Consensus size: 9
5083830 TAGATTTAAC
5083840 AGATGTTAT
1 AGATGTTAT
*
5083849 ATATGTTAT
1 AGATGTTAT
5083858 AGA---TAT
1 AGATGTTAT
5083864 AGATGTTAT
1 AGATGTTAT
5083873 AGA--TTAT
1 AGATGTTAT
*
5083880 AGATATTAT
1 AGATGTTAT
5083889 AGAT
1 AGAT
5083893 TATAGATTCA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
6 6 0.16
7 7 0.19
9 24 0.65
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.43
Consensus pattern (9 bp):
AGATGTTAT
Found at i:5083879 original size:22 final size:23
Alignment explanation
Indices: 5083840--5083885 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
5083830 TAGATTTAAC
*
5083840 AGATGTTATATATGTTATAGATAT
1 AGATGTTATAGA-GTTATAGATAT
5083864 AGATGTTATAGA-TTATAGATAT
1 AGATGTTATAGAGTTATAGATAT
5083886 TATAGATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.48
24 11 0.52
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.43
Consensus pattern (23 bp):
AGATGTTATAGAGTTATAGATAT
Found at i:5083881 original size:7 final size:7
Alignment explanation
Indices: 5083854--5083900 Score: 51
Period size: 7 Copynumber: 6.3 Consensus size: 7
5083844 GTTATATATG
5083854 TTATAGA
1 TTATAGA
5083861 -TATAGA
1 TTATAGA
5083867 TGTTATAGA
1 --TTATAGA
5083876 TTATAGATA
1 TTATAG--A
5083885 TTATAGA
1 TTATAGA
5083892 TTATAGA
1 TTATAGA
5083899 TT
1 TT
5083901 CAATACATCA
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
6 6 0.17
7 16 0.46
9 13 0.37
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (7 bp):
TTATAGA
Found at i:5083882 original size:16 final size:16
Alignment explanation
Indices: 5083845--5083899 Score: 85
Period size: 16 Copynumber: 3.5 Consensus size: 16
5083835 TTAACAGATG
*
5083845 TTATATATGTTATAGA
1 TTATAGATGTTATAGA
5083861 -TATAGATGTTATAGA
1 TTATAGATGTTATAGA
*
5083876 TTATAGATATTATAGA
1 TTATAGATGTTATAGA
5083892 TTATAGAT
1 TTATAGAT
5083900 TCAATACATC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.39
16 22 0.61
ACGTcount: A:0.40, C:0.00, G:0.15, T:0.45
Consensus pattern (16 bp):
TTATAGATGTTATAGA
Found at i:5084477 original size:6 final size:6
Alignment explanation
Indices: 5084468--5084526 Score: 50
Period size: 6 Copynumber: 9.8 Consensus size: 6
5084458 ATTTCGTTTC
* * *
5084468 TCTTTT TCTTCT TCTTAT TCTTTT TCTCTTT T-TTTT TTTTCTT TC-TTT
1 TCTTTT TCTTTT TCTTTT TCTTTT TCT-TTT TCTTTT TCTT-TT TCTTTT
*
5084516 TCTTCT TCTTT
1 TCTTTT TCTTT
5084527 CTTCCTGAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
5 8 0.19
6 28 0.65
7 7 0.16
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (6 bp):
TCTTTT
Found at i:5084516 original size:15 final size:15
Alignment explanation
Indices: 5084468--5084529 Score: 63
Period size: 15 Copynumber: 3.9 Consensus size: 15
5084458 ATTTCGTTTC
5084468 TCTTTTTCTTCTTCTTAT
1 TCTTTTTC-T-TTCTT-T
5084486 TCTTTTTCTCTT-TTT
1 TCTTTTTCT-TTCTTT
*
5084501 TTTTTTTCTTTCTTT
1 TCTTTTTCTTTCTTT
*
5084516 TCTTCTTCTTTCTT
1 TCTTTTTCTTTCTT
5084530 CCTGAGATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
14 2 0.05
15 24 0.60
16 2 0.05
17 4 0.10
18 8 0.20
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (15 bp):
TCTTTTTCTTTCTTT
Found at i:5087914 original size:31 final size:30
Alignment explanation
Indices: 5087878--5087935 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
5087868 TGTTGTATAC
5087878 ATATTGAACATG-TTATCTAATGTGATGTATT
1 ATATTGAACA-GATTATCTAATG-GATGTATT
*
5087909 ATATTGAGCAGATTATCTAATGGATGT
1 ATATTGAACAGATTATCTAATGGATGT
5087936 TTTGTAAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 6 0.24
31 19 0.76
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.41
Consensus pattern (30 bp):
ATATTGAACAGATTATCTAATGGATGTATT
Found at i:5089935 original size:6 final size:6
Alignment explanation
Indices: 5089924--5089996 Score: 60
Period size: 6 Copynumber: 11.7 Consensus size: 6
5089914 ATTCTTGTAG
* * *
5089924 CAATAA CAATAA CAATAA CAATAA -GATAAA CAATAA CAATAT CAACAA
1 CAATAA CAATAA CAATAA CAATAA CAAT-AA CAATAA CAATAA CAATAA
5089972 C-ATAAA CAATATTA GCAATAA CAAT
1 CAAT-AA CAATA--A -CAATAA CAAT
5089997 CAACTAATTC
Statistics
Matches: 54, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
5 3 0.06
6 40 0.74
7 5 0.09
8 1 0.02
9 5 0.09
ACGTcount: A:0.62, C:0.16, G:0.03, T:0.19
Consensus pattern (6 bp):
CAATAA
Found at i:5089957 original size:24 final size:24
Alignment explanation
Indices: 5089928--5089996 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
5089918 TTGTAGCAAT
*
5089928 AACAATAACAATAACAATAAGATA
1 AACAATAACAATAACAATAACATA
* *
5089952 AACAATAACAATATCAACAACATA
1 AACAATAACAATAACAATAACATA
5089976 AACAATATTAGCAATAACAAT
1 AACAATA--A-CAATAACAAT
5089997 CAACTAATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 28 0.76
26 1 0.03
27 8 0.22
ACGTcount: A:0.62, C:0.16, G:0.03, T:0.19
Consensus pattern (24 bp):
AACAATAACAATAACAATAACATA
Found at i:5090610 original size:22 final size:22
Alignment explanation
Indices: 5090572--5090613 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
5090562 TCCATGTCCT
*
5090572 TAAGCTTTGAAAGGCTTACAGA
1 TAAGCTTTCAAAGGCTTACAGA
5090594 TAAGCCTTTCAAA-GCTTACA
1 TAAG-CTTTCAAAGGCTTACA
5090614 AAAATGGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.29
Consensus pattern (22 bp):
TAAGCTTTCAAAGGCTTACAGA
Found at i:5090639 original size:56 final size:55
Alignment explanation
Indices: 5090537--5090649 Score: 129
Period size: 56 Copynumber: 2.0 Consensus size: 55
5090527 ATTCATATTT
* ** * *
5090537 ATAAGCCCTTTAAAGCTTACAAAAATCCATGTCCTTAAGCTTTGAAAGGCTTACAG
1 ATAAGCCCTTTAAAGCTTACAAAAATCCATATCCAAAAACTATGAAAGG-TTACAG
** *
5090593 ATAAG-CCTTTCAAAGCTTACAAAAATGGATATCCAAAAACTATGAAAGGTTATAG
1 ATAAGCCCTTT-AAAGCTTACAAAAATCCATATCCAAAAACTATGAAAGGTTACAG
5090648 AT
1 AT
5090650 GCTCAAATAT
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
55 12 0.25
56 36 0.75
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.27
Consensus pattern (55 bp):
ATAAGCCCTTTAAAGCTTACAAAAATCCATATCCAAAAACTATGAAAGGTTACAG
Found at i:5093342 original size:17 final size:16
Alignment explanation
Indices: 5093316--5093352 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
5093306 GTTGAATTCA
5093316 AACCATAACAAACTTG
1 AACCATAACAAACTTG
*
5093332 AACCAATAACAGACTTG
1 AACC-ATAACAAACTTG
5093349 AACC
1 AACC
5093353 TGCAGACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.49, C:0.27, G:0.08, T:0.16
Consensus pattern (16 bp):
AACCATAACAAACTTG
Found at i:5101109 original size:6 final size:6
Alignment explanation
Indices: 5101100--5101147 Score: 50
Period size: 6 Copynumber: 8.3 Consensus size: 6
5101090 ATAATTTAAT
5101100 TTTATA TTTATA --TATA TTTATA TATT-TA TTTA-A GTTTATA TTTATA
1 TTTATA TTTATA TTTATA TTTATA T-TTATA TTTATA -TTTATA TTTATA
5101146 TT
1 TT
5101148 AAAAAATAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
4 4 0.11
5 3 0.08
6 26 0.72
7 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (6 bp):
TTTATA
Found at i:5101125 original size:18 final size:16
Alignment explanation
Indices: 5101096--5101146 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
5101086 ATTAATAATT
5101096 TAATTTTATATTTATA
1 TAATTTTATATTTATA
*
5101112 TATATTTATATATTTATT
1 TA-ATTT-TATATTTATA
*
5101130 TAAGTTTATATTTATA
1 TAATTTTATATTTATA
5101146 T
1 T
5101147 TAAAAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
16 12 0.40
17 7 0.23
18 11 0.37
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (16 bp):
TAATTTTATATTTATA
Found at i:5101147 original size:18 final size:17
Alignment explanation
Indices: 5101093--5101147 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
5101083 TTAATTAATA
5101093 ATTTAATTTTATATTTAT
1 ATTTAA-TTTATATTTAT
*
5101111 ATAT-ATTTATATATT-T
1 ATTTAATTTATAT-TTAT
5101127 ATTTAAGTTTATATTTAT
1 ATTTAA-TTTATATTTAT
5101145 ATT
1 ATT
5101148 AAAAAATAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
16 11 0.35
17 6 0.19
18 14 0.45
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
ATTTAATTTATATTTAT
Found at i:5101165 original size:20 final size:20
Alignment explanation
Indices: 5101140--5101184 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
5101130 TAAGTTTATA
5101140 TTTATATTAAAAAATAATAT
1 TTTATATTAAAAAATAATAT
*
5101160 TTTATATTTAAAAATAATAT
1 TTTATATTAAAAAATAATAT
5101180 TTTAT
1 TTTAT
5101185 TAATTTCAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTTATATTAAAAAATAATAT
Found at i:5101590 original size:16 final size:16
Alignment explanation
Indices: 5101571--5101607 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
5101561 GTATATATAT
*
5101571 AATTTTTTAAATTTAA
1 AATTTTTAAAATTTAA
*
5101587 AATTATTAAAATTTAA
1 AATTTTTAAAATTTAA
5101603 AATTT
1 AATTT
5101608 AAAAATCTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
AATTTTTAAAATTTAA
Found at i:5101618 original size:16 final size:16
Alignment explanation
Indices: 5101579--5101618 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
5101569 ATAATTTTTT
*
5101579 AAATTTAAAATTATTA
1 AAATTTAAAATTATAA
5101595 AAATTTAAAATT-TAA
1 AAATTTAAAATTATAA
5101610 AAATCTTAA
1 AAAT-TTAA
5101619 CTCTCTAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATTTAAAATTATAA
Found at i:5105439 original size:102 final size:102
Alignment explanation
Indices: 5105263--5105466 Score: 372
Period size: 102 Copynumber: 2.0 Consensus size: 102
5105253 CACACATACT
*
5105263 CTCTAGCAGTAAGCATCTCATCCCTTGAAAAGCCCTCTACTTTAATGATTTCGTTAAACAACACC
1 CTCTAGCAGTAAGCATCTCATCCCTTGAAAAGCCCTCTACTTTAATGATTTCGTTAAACAACAAC
* *
5105328 ATCATCCTATCATTTCCCTCGACATCTTTGTTGAAAA
66 ATCATCCTATCATTTCACTCGACATCTTTGCTGAAAA
*
5105365 CTCTAGCAGTAAGCATCTCATCCCTTGAAAAGCCCTCTACTTTCATGATTTCGTTAAACAACAAC
1 CTCTAGCAGTAAGCATCTCATCCCTTGAAAAGCCCTCTACTTTAATGATTTCGTTAAACAACAAC
5105430 ATCATCCTATCATTTCACTCGACATCTTTGCTGAAAA
66 ATCATCCTATCATTTCACTCGACATCTTTGCTGAAAA
5105467 TAGAGGCTAT
Statistics
Matches: 98, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 98 1.00
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (102 bp):
CTCTAGCAGTAAGCATCTCATCCCTTGAAAAGCCCTCTACTTTAATGATTTCGTTAAACAACAAC
ATCATCCTATCATTTCACTCGACATCTTTGCTGAAAA
Found at i:5108347 original size:28 final size:28
Alignment explanation
Indices: 5108315--5108369 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
5108305 GTGATGGAGT
5108315 TAGTATTGGAGTGGATAATAAGTTAAGC
1 TAGTATTGGAGTGGATAATAAGTTAAGC
* * *
5108343 TAGTATTGGATTGGATGATGAGTTAAG
1 TAGTATTGGAGTGGATAATAAGTTAAG
5108370 TGTTAAAGTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.02, G:0.31, T:0.35
Consensus pattern (28 bp):
TAGTATTGGAGTGGATAATAAGTTAAGC
Found at i:5111490 original size:18 final size:20
Alignment explanation
Indices: 5111469--5111510 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
5111459 CAAAATAATT
*
5111469 ATAAATATGTTT-A-AAATA
1 ATAAATATATTTGACAAATA
5111487 ATAAATATATTTGACAAATA
1 ATAAATATATTTGACAAATA
5111507 ATAA
1 ATAA
5111511 TCCACCTCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.52
19 1 0.05
20 9 0.43
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (20 bp):
ATAAATATATTTGACAAATA
Found at i:5114798 original size:18 final size:18
Alignment explanation
Indices: 5114765--5114799 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
5114755 CTTATTTGAT
**
5114765 ATAAAGTAAAGGTGACTC
1 ATAAAGTAAACATGACTC
5114783 ATAAAGTAAACATGACT
1 ATAAAGTAAACATGACT
5114800 TGACTTAGAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.49, C:0.11, G:0.17, T:0.23
Consensus pattern (18 bp):
ATAAAGTAAACATGACTC
Found at i:5120621 original size:13 final size:13
Alignment explanation
Indices: 5120603--5120627 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5120593 ATGTCAAATA
5120603 AGTGATGAGTCAT
1 AGTGATGAGTCAT
5120616 AGTGATGAGTCA
1 AGTGATGAGTCA
5120628 CCGTACTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (13 bp):
AGTGATGAGTCAT
Found at i:5120644 original size:21 final size:21
Alignment explanation
Indices: 5120614--5120655 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
5120604 GTGATGAGTC
*
5120614 ATAGTGATGAGTCACCGTACT
1 ATAGTAATGAGTCACCGTACT
*
5120635 ATAGTAATGAGTCATCGTACT
1 ATAGTAATGAGTCACCGTACT
5120656 TTAGCTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (21 bp):
ATAGTAATGAGTCACCGTACT
Found at i:5124039 original size:20 final size:20
Alignment explanation
Indices: 5124001--5124040 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
5123991 AATCATGGAA
*
5124001 AAAGAAAAGAAAAATTAAAG
1 AAAGAAAAGAAAAAATAAAG
5124021 AAAGAAAA-AAAACAATAAAG
1 AAAGAAAAGAAAA-AATAAAG
5124041 TGATGAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.78, C:0.03, G:0.12, T:0.07
Consensus pattern (20 bp):
AAAGAAAAGAAAAAATAAAG
Found at i:5125629 original size:31 final size:31
Alignment explanation
Indices: 5125594--5125655 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
5125584 AGCTATTTAG
* *
5125594 GAGAAAATTGC-TTTAATTTTCTAGCAAAATT
1 GAGAAAATT-CATTTAATTTTCCAACAAAATT
5125625 GAGAAAATTCATTTAATTTTCCAACAAAATT
1 GAGAAAATTCATTTAATTTTCCAACAAAATT
5125656 TAATTTTCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 1 0.04
31 27 0.96
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.37
Consensus pattern (31 bp):
GAGAAAATTCATTTAATTTTCCAACAAAATT
Found at i:5129828 original size:12 final size:12
Alignment explanation
Indices: 5129811--5129841 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
5129801 TTTTCAAAAA
5129811 TTTTATTAATTG
1 TTTTATTAATTG
*
5129823 TTTTATTAATTT
1 TTTTATTAATTG
5129835 TTTTATT
1 TTTTATT
5129842 TTTAATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (12 bp):
TTTTATTAATTG
Found at i:5131305 original size:18 final size:18
Alignment explanation
Indices: 5131291--5131329 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
5131281 AGAAAAAAGA
5131291 AAGAAAAAAATAAAAAAT
1 AAGAAAAAAATAAAAAAT
*
5131309 GAGAAAAAAATTAAATAAAT
1 AAGAAAAAAA-TAAA-AAAT
5131329 A
1 A
5131330 TATAATAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 2
0.81 0.10 0.10
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (18 bp):
AAGAAAAAAATAAAAAAT
Found at i:5131337 original size:3 final size:3
Alignment explanation
Indices: 5131326--5131367 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
5131316 AAATTAAATA
5131326 AAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
5131368 ATGGTGTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:5131610 original size:46 final size:47
Alignment explanation
Indices: 5131560--5132549 Score: 510
Period size: 49 Copynumber: 20.9 Consensus size: 47
5131550 TTTAAAAGGT
* *
5131560 TCCTCTTAGCAGAGGCTCAACAACTTTAAAATTCT-TTTGAAAAAGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTATTTGGAAAAGC
* * *
5131606 TCCTCTCAGCAGATGCTCAACAACTTTAAAATCTTCT-CTTGAAAAGAGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAA--TTCTATTTGGAAA-AGC
*
5131655 TCCTCTTAGCAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAAAGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTC-TAT-TTGGAAAAGC
* * *
5131704 TACTCTCAGTAGAGGCTCAACAACTTTAAAATTCTCATATGGAAAAG-
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCT-ATTTGGAAAAGC
* * * *
5131751 T-CTCTCAACAGAAGCT-AACAACTTTAAAA-TCTTCTTTGGAAATGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTC-TATTTGGAAAAGC
* *
5131796 T--TCT-AGCAGAGGCT-AACAACTTTAAAAATTCATATCT-G-AAGGC
1 TCCTCTCAGCAGAGGCTCAACAACTTT-AAAATTC-TATTTGGAAAAGC
* * *
5131839 T--TACTCAGCAGAGGCTCAA-AACTTAAAAATTCTCATAT-GAAAA-A
1 TCCT-CTCAGCAGAGGCTCAACAACTTTAAAATTCT-ATTTGGAAAAGC
* *
5131883 T-CTTTCAGC--A-GCT-AA-AAC-TT-AAATT-T-TCTTGAAAAAGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTAT-TTGGAAAAGC
*** * * * ** ** * ** * **
5131921 AGAGATCACAACGAAATTCTTCTTAA-AAGCAGTAGAGCTCAACATTT--AAAAAT
1 --TCCTCTCAGC-AGAGGC-TC--AACAA-CTTTAAAATTC--TATTTGGAAAAGC
* * * * * * * *
5131974 TCAAT-T--GAAAAGGCATCTGAAGATCAACATTTTACA---TATCT-GTACAGC
1 TC-CTCTCAGCAGAGGC-TC---A-A-CAAC-TTTAAAATTCTATTTGGAAAAGC
*
5132022 TCCTCTCAGCAGA-GCTCAACAACTTTAAAATCTCT-TTTGAAAAAGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAAT-TCTATTTGGAAAAGC
* ** * *
5132068 TCCTCTTAATAGAGGCTTAATAACTTTAAAAATCTCATATCTT-GAAAAGGGC
1 TCCTCTCAGCAGAGGCTCAACAACTTT-AAAAT-TC-TAT-TTGGAAAA--GC
* *
5132120 TCCTCTCATCAAAGGCTCAACAACTTTAAAATTCTTATCTTGGAAAAGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTC-TAT-TTGGAAAAGC
* * *
5132169 TCCTCTCAGTAGAGGCTCAATAACTTTAAAA-TCTCATTTTGAAAATGGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCT-ATTTGGAAAA--GC
* *
5132218 TCCTCTCAGTAGAGGCTTAACAACTTTAAAATTCTTATATTGGAAAAGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTC-TAT-TTGGAAAAGC
* *
5132267 TCCTCTCAGTAGAGACTCAACAACTTTAAAA-TCTCATCTT-GAAAAGGGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCT-AT-TTGGAAAA--GC
* *
5132316 TCCTCTCAGCAAAGGCTCAACAATTTTAAAA-TCTCATCTT-GAAAAGGGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCT-AT-TTGGAAAA--GC
* *
5132365 TGCTCTCATCAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAAAGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTC-TAT-TTGGAAAAGC
*
5132414 TACTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTCATCTT-GAAAAGGGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCT-AT-TTGGAAAA--GC
* * *
5132463 TCCTCTCAACAGAGGCTCAATAACTTTAAAATTCT-TTTGAAAAAGC
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTATTTGGAAAAGC
*
5132509 TCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTTATTTG
1 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTC-TATTTG
5132550 TTTTTAAATT
Statistics
Matches: 747, Mismatches: 117, Indels: 158
0.73 0.11 0.15
Matches are distributed among these distances:
35 1 0.00
36 1 0.00
37 5 0.01
38 5 0.01
39 1 0.00
40 5 0.01
41 7 0.01
42 6 0.01
43 28 0.04
44 39 0.05
45 42 0.06
46 92 0.12
47 42 0.06
48 68 0.09
49 302 0.40
50 38 0.05
51 28 0.04
52 30 0.04
53 4 0.01
55 2 0.00
56 1 0.00
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.29
Consensus pattern (47 bp):
TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTATTTGGAAAAGC
Found at i:5131862 original size:88 final size:93
Alignment explanation
Indices: 5131562--5131868 Score: 264
Period size: 95 Copynumber: 3.3 Consensus size: 93
5131552 TAAAAGGTTC
* * * *
5131562 CTCTTAGCAGAGGCTCAACAACTTTAAAAT-TCT-T-TTGAAAAAGCTCCTCTCAGCAGATGCTC
1 CTCTCAGCAGAGGCTCAACAACTTTAAAATCT-TATCTTGGAAAAGCT-ATCTCAGCAGAGGCTC
* *
5131624 AACAACTTT-AAAATCTTC-TCTTGAAAAGAGCT
64 AACAACTTTAAAAATC-TCAT-ATGGAAA-AG-T
* *
5131656 CCTCTTAGCAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAAAGCTACTCTCAGTAGAGGCT
1 -CTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTTATCTTGGAAAAGCTA-TCTCAGCAGAGGCT
*
5131721 CAACAACTTTAAAATTCTCATATGGAAAAGT
63 CAACAACTTTAAAAATCTCATATGGAAAAGT
* * * *
5131752 CTCTCAACAGAAGCT-AACAACTTTAAAATCTTCT-TTGGAAATGCT-TCT-AGCAGAGGCT-AA
1 CTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGGAAAAGCTATCTCAGCAGAGGCTCAA
* *
5131812 CAACTTTAAAAAT-TCATATCTG--AAGG
66 CAACTTTAAAAATCTCATAT-GGAAAAGT
*
5131838 CTTACTCAGCAGAGGCTCAA-AACTTAAAAAT
1 C-T-CTCAGCAGAGGCTCAACAACTTTAAAAT
5131869 TCTCATATGA
Statistics
Matches: 182, Mismatches: 19, Indels: 29
0.79 0.08 0.13
Matches are distributed among these distances:
86 4 0.02
87 7 0.04
88 36 0.20
89 11 0.06
90 3 0.02
92 10 0.05
93 5 0.03
94 13 0.07
95 41 0.23
96 3 0.02
97 4 0.02
98 39 0.21
99 6 0.03
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (93 bp):
CTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGGAAAAGCTATCTCAGCAGAGGCTCAA
CAACTTTAAAAATCTCATATGGAAAAGT
Found at i:5132185 original size:49 final size:49
Alignment explanation
Indices: 5132019--5132546 Score: 552
Period size: 49 Copynumber: 10.8 Consensus size: 49
5132009 ATATCTGTAC
* *
5132019 AGCTCCTCTCAGCAGA-GCTCAACAACTTTAAAA-TCTCT-T-TTGAAAA
1 AGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCT-TATCTTGGAAA
* * * * *
5132065 AGCTCCTCTTAATAGAGGCTTAATAACTTTAAAAATCTCATATCTT-GAAA
1 AGCTCCTCTCAGTAGAGGCTCAACAACTTT-AAAAT-TCTTATCTTGGAAA
*
5132115 AGGGCTCCTCTCA-TCAAAGGCTCAACAACTTTAAAATTCTTATCTTGGAAA
1 A--GCTCCTCTCAGT-AGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAA
* * *
5132166 AGCTCCTCTCAGTAGAGGCTCAATAACTTTAAAA-TCTCAT-TTTGAAA
1 AGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAA
* *
5132213 ATGGCTCCTCTCAGTAGAGGCTTAACAACTTTAAAATTCTTATATTGGAAA
1 A--GCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAA
* *
5132264 AGCTCCTCTCAGTAGAGACTCAACAACTTTAAAA-TCTCATCTT-GAAA
1 AGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAA
* * * *
5132311 AGGGCTCCTCTCAGCAAAGGCTCAACAATTTTAAAA-TCTCATCTT-GAAA
1 A--GCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAA
*
5132360 AGGGCTGCTCTCA-TCAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAA
1 A--GCTCCTCTCAGT-AGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAA
* * *
5132411 AGCTACTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTCATCTT-GAAA
1 AGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAA
** * *
5132458 AGGGCTCCTCTCAACAGAGGCTCAATAACTTTAAAATTC-T-T-TTGAAAA
1 A--GCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAA
5132506 AGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTTAT
1 AGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTTAT
5132547 TTGTTTTTAA
Statistics
Matches: 411, Mismatches: 44, Indels: 52
0.81 0.09 0.10
Matches are distributed among these distances:
46 46 0.11
47 31 0.08
48 30 0.07
49 225 0.55
50 31 0.08
51 25 0.06
52 23 0.06
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (49 bp):
AGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTTATCTTGGAAA
Found at i:5132245 original size:98 final size:96
Alignment explanation
Indices: 5132020--5132546 Score: 613
Period size: 98 Copynumber: 5.4 Consensus size: 96
5132010 TATCTGTACA
* *
5132020 GCTCCTCTCAGCAGA-GCTCAACAACTTTAAAATCTCT-T-TTGAAAAAGCTCCTCTTAATAGAG
1 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCT-TATCTTGGAAAAGCTCCTCTCAATAGAG
*
5132082 GCTTAATAACTTTAAAAATCTCATATCTTGAAAAGG
65 GCTCAATAACTTT-AAAATCTCAT-T-TTGAAAA-G
* * *
5132118 GCTCCTCTCATCAAAGGCTCAACAACTTTAAAATTCTTATCTTGGAAAAGCTCCTCTCAGTAGAG
1 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTTATCTTGGAAAAGCTCCTCTCAATAGAG
5132183 GCTCAATAACTTTAAAATCTCATTTTGAAAATG
65 GCTCAATAACTTTAAAATCTCATTTTGAAAA-G
* * * *
5132216 GCTCCTCTCAGTAGAGGCTTAACAACTTTAAAATTCTTATATTGGAAAAGCTCCTCTCAGTAGAG
1 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTTATCTTGGAAAAGCTCCTCTCAATAGAG
* * *
5132281 ACTCAACAACTTTAAAATCTCATCTTGAAAAGG
65 GCTCAATAACTTTAAAATCTCATTTTGAAAA-G
* * * *
5132314 GCTCCTCTCAGCAAAGGCTCAACAATTTTAAAATCTCATCTT-GAAAAGGGCTGCTCTC-ATCAG
1 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGGAAAA--GCTCCTCTCAAT-AG
* * *
5132377 AGGCTCAACAACTTTAAAATTCTTATCTTGGAAAA-
63 AGGCTCAATAACTTTAAAA-TCTCAT-TTTGAAAAG
* * *
5132412 GCTACTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTT-GAAAAGGGCTCCTCTCAACAGA
1 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGGAAAA--GCTCCTCTCAATAGA
*
5132476 GGCTCAATAACTTTAAAAT-TC-TTTTGAAAAA
64 GGCTCAATAACTTTAAAATCTCATTTTGAAAAG
*
5132507 GCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTCTTAT
1 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTTAT
5132547 TTGTTTTTAA
Statistics
Matches: 378, Mismatches: 39, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
94 7 0.02
95 32 0.08
96 11 0.03
97 9 0.02
98 241 0.64
99 25 0.07
100 20 0.05
101 33 0.09
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (96 bp):
GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTTATCTTGGAAAAGCTCCTCTCAATAGAGG
CTCAATAACTTTAAAATCTCATTTTGAAAAG
Found at i:5132288 original size:147 final size:144
Alignment explanation
Indices: 5132020--5132546 Score: 686
Period size: 147 Copynumber: 3.6 Consensus size: 144
5132010 TATCTGTACA
* *
5132020 GCTCCTCTCAGCAGA-GCTCAACAACTTTAAAATCTCTTTTGAAAAAGCTCCTCTTAATAGAGGC
1 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTTTTGAAAAAGCTCCTCTCAGTAGAGGC
* * * * * *
5132084 TTAATAACTTTAAAAATCTCATATCTTGAAAAGGGCTCCTCTCA-TCAAAGGCTCAACAACTTTA
66 TCAACAACTTTAAAATTCTTATAT-TGGAAAA--GCTCCTCTCAGT-AGAGGCTCAACAACTTTA
*
5132148 AAATTCTTATCTTGGAAAA-
127 AAA-TCTCATCTT-GAAAAG
* * *
5132167 GCTCCTCTCAGTAGAGGCTCAATAACTTTAAAATCTCATTTTGAAAATGGCTCCTCTCAGTAGAG
1 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTC-TTTTGAAAA-AGCTCCTCTCAGTAGAG
* *
5132232 GCTTAACAACTTTAAAATTCTTATATTGGAAAAGCTCCTCTCAGTAGAGACTCAACAACTTTAAA
64 GCTCAACAACTTTAAAATTCTTATATTGGAAAAGCTCCTCTCAGTAGAGGCTCAACAACTTTAAA
5132297 ATCTCATCTTGAAAAGG
129 ATCTCATCTTGAAAA-G
* * * * *
5132314 GCTCCTCTCAGCAAAGGCTCAACAATTTTAAAATCTCATCTTGAAAAGGGCTGCTCTCA-TCAGA
1 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTC-TTTTGAAAA-AGCTCCTCTCAGT-AGA
* * *
5132378 GGCTCAACAACTTTAAAATTCTTATCTTGGAAAAGCTACTCTCAGCAGAGGCTCAACAACTTTAA
63 GGCTCAACAACTTTAAAATTCTTATATTGGAAAAGCTCCTCTCAGTAGAGGCTCAACAACTTTAA
5132443 AATCTCATCTTGAAAAGG
128 AATCTCATCTTGAAAA-G
* *
5132461 GCTCCTCTCAACAGAGGCTCAATAACTTTAAAAT-TCTTTTGAAAAAGCTCCTCTCAGTAGAGGC
1 GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTTTTGAAAAAGCTCCTCTCAGTAGAGGC
5132525 TCAACAACTTTAAAATTCTTAT
66 TCAACAACTTTAAAATTCTTAT
5132547 TTGTTTTTAA
Statistics
Matches: 341, Mismatches: 31, Indels: 19
0.87 0.08 0.05
Matches are distributed among these distances:
144 37 0.11
145 14 0.04
146 11 0.03
147 206 0.60
148 21 0.06
149 15 0.04
150 37 0.11
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.30
Consensus pattern (144 bp):
GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCTTTTGAAAAAGCTCCTCTCAGTAGAGGC
TCAACAACTTTAAAATTCTTATATTGGAAAAGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAAT
CTCATCTTGAAAAG
Found at i:5135452 original size:16 final size:16
Alignment explanation
Indices: 5135433--5135471 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
5135423 TCTTTTGTAT
5135433 TTTATATATT-TTATTA
1 TTTAT-TATTATTATTA
5135449 TTTATTATTATTATTA
1 TTTATTATTATTATTA
*
5135465 TGTATTA
1 TTTATTA
5135472 ATATATGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:5135548 original size:25 final size:26
Alignment explanation
Indices: 5135491--5135553 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 26
5135481 TATCTGTATT
5135491 TATTT-TTTTATTTAGAATAGATTTA
1 TATTTATTTTATTTAGAATAGATTTA
* *
5135516 TATGTATTTTATTTA-TATAG-TTATA
1 TATTTATTTTATTTAGAATAGATT-TA
5135541 TATTTATTATTAT
1 TATTTATT-TTAT
5135554 ATTTTTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
24 2 0.06
25 17 0.53
26 13 0.41
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (26 bp):
TATTTATTTTATTTAGAATAGATTTA
Found at i:5135555 original size:14 final size:14
Alignment explanation
Indices: 5135525--5135566 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
5135515 ATATGTATTT
5135525 TATTTATATAGTTATA
1 TATTTAT-TA-TTATA
5135541 TATTTATTATTATA
1 TATTTATTATTATA
*
5135555 TTTTTATT-TTAT
1 TATTTATTATTAT
5135567 TTTATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 4 0.16
14 12 0.48
15 2 0.08
16 7 0.28
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (14 bp):
TATTTATTATTATA
Found at i:5136559 original size:4 final size:4
Alignment explanation
Indices: 5136505--5136543 Score: 53
Period size: 4 Copynumber: 9.8 Consensus size: 4
5136495 TTTTTTCAAA
*
5136505 ATTT -TTT ATTT ATTT GTTTT ATTT ATTT ATTT ATTT ATT
1 ATTT ATTT ATTT ATTT -ATTT ATTT ATTT ATTT ATTT ATT
5136544 AGATTAGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
3 3 0.10
4 25 0.81
5 3 0.10
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (4 bp):
ATTT
Found at i:5136601 original size:17 final size:16
Alignment explanation
Indices: 5136564--5136649 Score: 73
Period size: 16 Copynumber: 5.2 Consensus size: 16
5136554 TATTTAATAT
* *
5136564 TTTTTATCTTTATCTTA
1 TTTTTAT-TTTTTTTTA
5136581 TTTTTATTTTTTTTTA
1 TTTTTATTTTTTTTTA
* *
5136597 CTTTTCTTTATTTTTTA
1 TTTTTATTT-TTTTTTA
* * *
5136614 TCTTTATTTATTTTCA
1 TTTTTATTTTTTTTTA
* *
5136630 CTTTTATTTTGTTTTA
1 TTTTTATTTTTTTTTA
5136646 TTTT
1 TTTT
5136650 CTTTAAATAA
Statistics
Matches: 53, Mismatches: 15, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
16 33 0.62
17 20 0.38
ACGTcount: A:0.14, C:0.08, G:0.01, T:0.77
Consensus pattern (16 bp):
TTTTTATTTTTTTTTA
Found at i:5136612 original size:27 final size:25
Alignment explanation
Indices: 5136563--5136652 Score: 73
Period size: 27 Copynumber: 3.6 Consensus size: 25
5136553 TTATTTAATA
*
5136563 TTTTTTATCTTTATCTTATTTTTATTT
1 TTTTTTA-CTTT-TCTTATTTTTATCT
5136590 TTTTTTACTTTTCTTTATTTTTTATCT
1 TTTTTTACTTTTC-TTA-TTTTTATCT
* *
5136617 TTATTTA-TTTTC--ACTTTTAT-T
1 TTTTTTACTTTTCTTATTTTTATCT
5136638 TTGTTTTA-TTTTCTT
1 TT-TTTTACTTTTCTT
5136653 TAAATAAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
21 3 0.06
22 15 0.28
23 1 0.02
25 2 0.04
26 12 0.22
27 21 0.39
ACGTcount: A:0.13, C:0.09, G:0.01, T:0.77
Consensus pattern (25 bp):
TTTTTTACTTTTCTTATTTTTATCT
Found at i:5136634 original size:22 final size:22
Alignment explanation
Indices: 5136609--5136650 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
5136599 TTTCTTTATT
5136609 TTTTATCTTT-ATTTATTTTCAC
1 TTTTAT-TTTGATTTATTTTCAC
*
5136631 TTTTATTTTGTTTTATTTTC
1 TTTTATTTTGATTTATTTTC
5136651 TTTAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.14, C:0.10, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTATTTTGATTTATTTTCAC
Found at i:5136737 original size:59 final size:58
Alignment explanation
Indices: 5136663--5136822 Score: 259
Period size: 59 Copynumber: 2.8 Consensus size: 58
5136653 TAAATAAAAA
*
5136663 TCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTT
1 TCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
* *
5136721 TCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
1 TC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
**
5136780 TC-AAAAAATATTTTTGGAAAAAAGTTGAAAGTATCAATTTTCC
1 TCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
5136823 CTACATAAGA
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
57 37 0.39
58 2 0.02
59 55 0.59
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.36
Consensus pattern (58 bp):
TCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
Found at i:5141318 original size:9 final size:9
Alignment explanation
Indices: 5141279--5141312 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
5141269 GGATAAGCTG
5141279 GTGGTTGTA
1 GTGGTTGTA
5141288 GTGGTTGTA
1 GTGGTTGTA
5141297 GTGGTTGGTA
1 GTGGTT-GTA
5141307 -TGGTTG
1 GTGGTTG
5141313 ATATGGATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 1 0.04
9 20 0.83
10 3 0.12
ACGTcount: A:0.09, C:0.00, G:0.47, T:0.44
Consensus pattern (9 bp):
GTGGTTGTA
Found at i:5148152 original size:2 final size:2
Alignment explanation
Indices: 5148147--5148175 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
5148137 ATATCAGCAA
5148147 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5148176 AAATTTTAGC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5150947 original size:8 final size:8
Alignment explanation
Indices: 5150934--5150966 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
5150924 ATAAAATATA
5150934 ATATAAAT
1 ATATAAAT
5150942 ATATAAAT
1 ATATAAAT
5150950 ATATAAAT
1 ATATAAAT
*
5150958 -TATTAAT
1 ATATAAAT
5150965 AT
1 AT
5150967 TTTATATAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
7 6 0.26
8 17 0.74
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
ATATAAAT
Found at i:5162088 original size:18 final size:18
Alignment explanation
Indices: 5162047--5162090 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
5162037 AGGTAAAAAA
*
5162047 AATTTTTTTTAATTTTCT
1 AATTTTTTTTAATTATCT
5162065 AATTTTTTTTAATATAT-T
1 AATTTTTTTTAAT-TATCT
5162083 -ATTTTTTT
1 AATTTTTTT
5162091 ATTATTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 8 0.33
18 14 0.58
19 2 0.08
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (18 bp):
AATTTTTTTTAATTATCT
Found at i:5162095 original size:11 final size:11
Alignment explanation
Indices: 5162079--5162104 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
5162069 TTTTTTAATA
5162079 TATTATTTTTT
1 TATTATTTTTT
5162090 TATTATTTTTT
1 TATTATTTTTT
5162101 TATT
1 TATT
5162105 TTATATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
TATTATTTTTT
Found at i:5162535 original size:15 final size:15
Alignment explanation
Indices: 5162514--5162557 Score: 72
Period size: 15 Copynumber: 2.9 Consensus size: 15
5162504 TCTAAAACCC
5162514 CTAAAATCCAAAA-T
1 CTAAAATCCAAAACT
5162528 CTTAAAATCCAAAACT
1 C-TAAAATCCAAAACT
5162544 CTAAAATCCAAAAC
1 CTAAAATCCAAAAC
5162558 CCCCTAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.04
15 25 0.89
16 2 0.07
ACGTcount: A:0.55, C:0.25, G:0.00, T:0.20
Consensus pattern (15 bp):
CTAAAATCCAAAACT
Found at i:5162617 original size:15 final size:14
Alignment explanation
Indices: 5162593--5162638 Score: 58
Period size: 15 Copynumber: 3.3 Consensus size: 14
5162583 TTTAAACTCT
5162593 TAAATCCAAACCCC
1 TAAATCCAAACCCC
*
5162607 TAAATTCCAAACCCT
1 TAAA-TCCAAACCCC
*
5162622 TAAAT-CAAAACCC
1 TAAATCCAAACCCC
5162635 TAAA
1 TAAA
5162639 CCTCAAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 10 0.36
14 5 0.18
15 13 0.46
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAATCCAAACCCC
Found at i:5162695 original size:14 final size:14
Alignment explanation
Indices: 5162507--5162696 Score: 60
Period size: 14 Copynumber: 12.8 Consensus size: 14
5162497 CTAAGTTTCT
5162507 AAAACCCCTAAAATCC
1 AAAA-CCCTAAAAT-C
* *
5162523 AAAATCTTAAAATCC
1 AAAACCCTAAAAT-C
*
5162538 AAAACTCTAAAATCC
1 AAAACCCTAAAAT-C
5162553 AAAACCCCCTAAAATC
1 AAAA--CCCTAAAATC
* * *
5162569 GAAAATTCC-AAACCTT
1 -AAAA-CCCTAAA-ATC
* * *
5162585 TAAACTCTTAAATCC
1 AAAACCCTAAAAT-C
* *
5162600 AAACCCCTAAATTC
1 AAAACCCTAAAATC
* *
5162614 CAAACCCTTAAATC
1 AAAACCCTAAAATC
*
5162628 AAAACCCTAAACCTC
1 AAAACCCTAAA-ATC
*** *
5162643 -AAATTTTAAAACC
1 AAAACCCTAAAATC
*
5162656 GAAACCCTAAAATC
1 AAAACCCTAAAATC
* *
5162670 TTCAAACTCTAAAATC
1 --AAAACCCTAAAATC
5162686 AAAACCCTAAA
1 AAAACCCTAAA
5162697 CCTTCAATAC
Statistics
Matches: 123, Mismatches: 41, Indels: 22
0.66 0.22 0.12
Matches are distributed among these distances:
13 1 0.01
14 47 0.38
15 43 0.35
16 20 0.16
17 12 0.10
ACGTcount: A:0.48, C:0.29, G:0.01, T:0.21
Consensus pattern (14 bp):
AAAACCCTAAAATC
Found at i:5162713 original size:30 final size:29
Alignment explanation
Indices: 5162578--5162713 Score: 104
Period size: 28 Copynumber: 4.7 Consensus size: 29
5162568 CGAAAATTCC
* *
5162578 AAACCTTTAAACTCTT-AAATCCAAACCCCT
1 AAACCTTCAAAC-CTTAAAAT-CAAAACCCT
5162608 AAA--TTCCAAACCCTT-AAATCAAAACCCT
1 AAACCTT-CAAA-CCTTAAAATCAAAACCCT
** * *
5162636 AAACC-TCAAATTTTAAAACCGAAACCCT
1 AAACCTTCAAACCTTAAAATCAAAACCCT
*
5162664 AAAATCTTCAAA-CTCTAAAATCAAAACCCT
1 -AAACCTTCAAACCT-TAAAATCAAAACCCT
5162694 AAACCTTCAATACCTTAAAA
1 AAACCTTCAA-ACCTTAAAA
5162714 CCCTCAAAAC
Statistics
Matches: 85, Mismatches: 11, Indels: 20
0.73 0.09 0.17
Matches are distributed among these distances:
27 2 0.02
28 28 0.33
29 25 0.29
30 28 0.33
31 2 0.02
ACGTcount: A:0.46, C:0.29, G:0.01, T:0.24
Consensus pattern (29 bp):
AAACCTTCAAACCTTAAAATCAAAACCCT
Found at i:5168044 original size:9 final size:8
Alignment explanation
Indices: 5168026--5168065 Score: 53
Period size: 9 Copynumber: 4.8 Consensus size: 8
5168016 ATAGGTAAAC
5168026 TATTTTTT
1 TATTTTTT
5168034 TATTATTTT
1 TATT-TTTT
5168043 TATTTATTT
1 TATTT-TTT
5168052 TATTTTTT
1 TATTTTTT
*
5168060 TCTTTT
1 TATTTT
5168066 GATTTTTATC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 13 0.45
9 16 0.55
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (8 bp):
TATTTTTT
Found at i:5168054 original size:18 final size:16
Alignment explanation
Indices: 5168026--5168065 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
5168016 ATAGGTAAAC
5168026 TATTTTTTTATTATTTT
1 TATTTTTTTATT-TTTT
5168043 TATTTATTTTATTTTTT
1 TATTT-TTTTATTTTTT
*
5168060 TCTTTT
1 TATTTT
5168066 GATTTTTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 13 0.62
18 7 0.33
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (16 bp):
TATTTTTTTATTTTTT
Found at i:5168065 original size:13 final size:13
Alignment explanation
Indices: 5168026--5168072 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
5168016 ATAGGTAAAC
5168026 TATTTTTTTATTAT
1 TATTTTTTTATT-T
*
5168040 T-TTTATTTATTT
1 TATTTTTTTATTT
*
5168052 TATTTTTTTCTTT
1 TATTTTTTTATTT
5168065 TGATTTTT
1 T-ATTTTT
5168073 ATCAAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
12 2 0.07
13 19 0.68
14 7 0.25
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.81
Consensus pattern (13 bp):
TATTTTTTTATTT
Found at i:5168294 original size:40 final size:36
Alignment explanation
Indices: 5168208--5168298 Score: 89
Period size: 40 Copynumber: 2.4 Consensus size: 36
5168198 TTGTATCTAC
5168208 AAAT-ATAATATTTTATTAAATTAATATTAAATTAA
1 AAATAATAATATTTTATTAAATTAATATTAAATTAA
5168243 AATATTAAATAATAATTTTATT-AATATAATATATATAATTAA
1 AA-A-T-AATAAT-ATTTTATTAAAT-TAATAT-TA-AATTAA
5168285 TAAATAATAA-ATTT
1 -AAATAATAATATTT
5168299 ATTTCTATAT
Statistics
Matches: 47, Mismatches: 0, Indels: 15
0.76 0.00 0.24
Matches are distributed among these distances:
35 2 0.04
36 1 0.02
37 1 0.02
38 4 0.09
39 8 0.17
40 19 0.40
41 3 0.06
42 7 0.15
43 2 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (36 bp):
AAATAATAATATTTTATTAAATTAATATTAAATTAA
Found at i:5169050 original size:26 final size:25
Alignment explanation
Indices: 5169006--5169071 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
5168996 AATAAAATTT
*
5169006 AAAATATAAATTTTAAAAAAAACTA
1 AAAATAAAAATTTTAAAAAAAACTA
* **
5169031 AAAATTAAAAATTTTCAAAAAGTCTA
1 AAAA-TAAAAATTTTAAAAAAAACTA
*
5169057 AAAATAAGAATTTTA
1 AAAATAAAAATTTTA
5169072 TTTTTTAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 13 0.38
26 21 0.62
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.30
Consensus pattern (25 bp):
AAAATAAAAATTTTAAAAAAAACTA
Found at i:5170448 original size:17 final size:18
Alignment explanation
Indices: 5170426--5170463 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
5170416 TTTTATTATA
5170426 TTTTTA-ATAATTTAATT
1 TTTTTATATAATTTAATT
* *
5170443 TTTTTATTTATTTTAATT
1 TTTTTATATAATTTAATT
5170461 TTT
1 TTT
5170464 ATATTGTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTATATAATTTAATT
Found at i:5171919 original size:25 final size:25
Alignment explanation
Indices: 5171867--5171919 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
5171857 ATCATTAAAT
* **
5171867 TTTTAAAATAATGATAATTAATTTA
1 TTTTAAAATAAAGATAATTAATACA
5171892 TTTT-AAATAAAGATAACTTAATACA
1 TTTTAAAATAAAGATAA-TTAATACA
5171917 TTT
1 TTT
5171920 ATCTCAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (25 bp):
TTTTAAAATAAAGATAATTAATACA
Found at i:5172108 original size:18 final size:18
Alignment explanation
Indices: 5172087--5172124 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
5172077 TCTTCAGTAT
*
5172087 AAAAATGAATGAAAATAAA
1 AAAAATAAAT-AAAATAAA
5172106 AAAAATAAATAAAATAAA
1 AAAAATAAATAAAATAAA
5172124 A
1 A
5172125 TAATTAGTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (18 bp):
AAAAATAAATAAAATAAA
Found at i:5172266 original size:26 final size:24
Alignment explanation
Indices: 5172208--5172266 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 24
5172198 AAAATTAAGC
*
5172208 ATTAAAAATTACATACTAATTTTT
1 ATTATAAATTACATACTAATTTTT
5172232 -TTATGTAAATTACATACTGAATTTTAT
1 ATTA--TAAATTACATACT-AATTTT-T
5172259 ATTATAAA
1 ATTATAAA
5172267 AAATGTTTAG
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
23 3 0.10
25 12 0.41
26 10 0.34
27 1 0.03
28 3 0.10
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (24 bp):
ATTATAAATTACATACTAATTTTT
Found at i:5176683 original size:21 final size:21
Alignment explanation
Indices: 5176657--5176696 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
5176647 ATTATTCAAT
5176657 AATGTAATAATTGATTATATA
1 AATGTAATAATTGATTATATA
*
5176678 AATGTAATATTTGATTATA
1 AATGTAATAATTGATTATA
5176697 AGTATAACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (21 bp):
AATGTAATAATTGATTATATA
Found at i:5184335 original size:13 final size:14
Alignment explanation
Indices: 5184309--5184339 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
5184299 AATTTTTAAA
5184309 TACAATTTACCTTT
1 TACAATTTACCTTT
5184323 TACAATTTA-CTTT
1 TACAATTTACCTTT
5184336 TACA
1 TACA
5184340 TTTTGACAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.32, C:0.19, G:0.00, T:0.48
Consensus pattern (14 bp):
TACAATTTACCTTT
Found at i:5194693 original size:5 final size:6
Alignment explanation
Indices: 5194671--5194700 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
5194661 ATTTGGTAAC
*
5194671 ATTTCT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
5194701 TTGAAAGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:5195030 original size:11 final size:11
Alignment explanation
Indices: 5195014--5195053 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
5195004 TTTCAAAATC
*
5195014 AATAAATTGAA
1 AATAAAATGAA
5195025 AATAAAATGAA
1 AATAAAATGAA
5195036 AATAAAAT-AA
1 AATAAAATGAA
*
5195046 AACAAAAT
1 AATAAAAT
5195054 TTTCAAAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 9 0.33
11 18 0.67
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (11 bp):
AATAAAATGAA
Found at i:5205242 original size:16 final size:15
Alignment explanation
Indices: 5205221--5205250 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
5205211 GGAACAAAAA
5205221 AAAAATACCAAAAACT
1 AAAAATA-CAAAAACT
5205237 AAAAATACAAAAAC
1 AAAAATACAAAAAC
5205251 AAGATGAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.73, C:0.17, G:0.00, T:0.10
Consensus pattern (15 bp):
AAAAATACAAAAACT
Found at i:5206335 original size:5 final size:5
Alignment explanation
Indices: 5206325--5206368 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
5206315 TAAATAGATC
*
5206325 AAAAT AAAAT AAAAT AAAAT AAAAT ACAAAT -ACAT -AAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT A-AAAT AAAAT AAAAT AAAAT
5206369 GTGCATATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 6 0.17
5 25 0.71
6 4 0.11
ACGTcount: A:0.75, C:0.05, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:5207455 original size:30 final size:30
Alignment explanation
Indices: 5207419--5207486 Score: 100
Period size: 30 Copynumber: 2.3 Consensus size: 30
5207409 GATTTAGTAC
5207419 AAATTAAATATTAAAAATTTATTTAAATAT
1 AAATTAAATATTAAAAATTTATTTAAATAT
* * * *
5207449 AAATTAAATATTAAAAGTTTATTTGACTGT
1 AAATTAAATATTAAAAATTTATTTAAATAT
5207479 AAATTAAA
1 AAATTAAA
5207487 AGTTGATGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.53, C:0.01, G:0.04, T:0.41
Consensus pattern (30 bp):
AAATTAAATATTAAAAATTTATTTAAATAT
Found at i:5214082 original size:87 final size:84
Alignment explanation
Indices: 5213917--5214084 Score: 212
Period size: 87 Copynumber: 2.0 Consensus size: 84
5213907 AGGTCCTAGC
5213917 TTCAAACATGGTTGCAAACCTGCCAAAATCATCATTCCTGGATCAAAGAACAGTAAATAAAGTCC
1 TTCAAACATGGTTGCAAACCTGCCAAAATCATCATTCCTGGATCAAAGAACAGTAAATAAAGTCC
*
5213982 CCCTGTAAAACCAATTAGT
66 CCCTATAAAACCAATTAGT
* * * * * * *
5214001 TTCAAACGTGGTTGCAAACCACTTGCCTAAATCATCATTGCTGGATCAAAGTACATTTAATGAAG
1 TTCAAACATGGTTGCAAA-C-C-TGCCAAAATCATCATTCCTGGATCAAAGAACAGTAAATAAAG
*
5214066 TCCCACC-ATAAGACCAATT
63 TCCC-CCTATAAAACCAATT
5214085 GATGGTTAGG
Statistics
Matches: 71, Mismatches: 9, Indels: 5
0.84 0.11 0.06
Matches are distributed among these distances:
84 17 0.24
85 1 0.01
86 1 0.01
87 50 0.70
88 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.26
Consensus pattern (84 bp):
TTCAAACATGGTTGCAAACCTGCCAAAATCATCATTCCTGGATCAAAGAACAGTAAATAAAGTCC
CCCTATAAAACCAATTAGT
Found at i:5214198 original size:2 final size:2
Alignment explanation
Indices: 5214191--5214231 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
5214181 TAAAAGGAGG
5214191 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
5214232 GGTGCAGGAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:5221185 original size:20 final size:20
Alignment explanation
Indices: 5221157--5221194 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5221147 TTTATTATCA
*
5221157 CCAATTAAAATTAAAATAAT
1 CCAAATAAAATTAAAATAAT
*
5221177 CCAAATAAATTTAAAATA
1 CCAAATAAAATTAAAATA
5221195 TATATTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.29
Consensus pattern (20 bp):
CCAAATAAAATTAAAATAAT
Found at i:5222793 original size:34 final size:35
Alignment explanation
Indices: 5222755--5222894 Score: 130
Period size: 34 Copynumber: 4.1 Consensus size: 35
5222745 GTAAATCTTA
*
5222755 AAAATAAATATTTAAGAATTATATTAT-ATTTTTG
1 AAAATAAATTTTTAAGAATTATATTATAATTTTTG
* *
5222789 AAAATAAATTTTTAA-AA-TACAATATAATTTTTG
1 AAAATAAATTTTTAAGAATTATATTATAATTTTTG
* **
5222822 AAAATTAATTTTTAAGTACGTA-A-TATAATTTTTG
1 AAAATAAATTTTTAAG-AATTATATTATAATTTTTG
* * * * *
5222856 AAAATATATTTTTCAGAGTTATATTGT-ATTTTTA
1 AAAATAAATTTTTAAGAATTATATTATAATTTTTG
5222890 AAAAT
1 AAAAT
5222895 TTATTTTTGA
Statistics
Matches: 88, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
32 6 0.07
33 26 0.30
34 50 0.57
35 4 0.05
36 2 0.02
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.46
Consensus pattern (35 bp):
AAAATAAATTTTTAAGAATTATATTATAATTTTTG
Found at i:5222931 original size:21 final size:22
Alignment explanation
Indices: 5222891--5222933 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
5222881 GTATTTTTAA
5222891 AAATTTATTTTTGAAAATATAT
1 AAATTTATTTTTGAAAATATAT
5222913 AAATTT-TTTTT-AAATATATAT
1 AAATTTATTTTTGAAA-ATATAT
5222934 TTAATTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 3 0.15
21 11 0.55
22 6 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (22 bp):
AAATTTATTTTTGAAAATATAT
Found at i:5230942 original size:26 final size:26
Alignment explanation
Indices: 5230913--5230969 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
5230903 TGATTTATAA
*
5230913 AATTACTATAATACTCC-TTTTAACAT
1 AATTACTAAAATAC-CCTTTTTAACAT
*
5230939 AATTACTAAAATACCCTTTTTACCAT
1 AATTACTAAAATACCCTTTTTAACAT
5230965 AATTA
1 AATTA
5230970 ATCAAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 2 0.07
26 26 0.93
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (26 bp):
AATTACTAAAATACCCTTTTTAACAT
Found at i:5232625 original size:25 final size:26
Alignment explanation
Indices: 5232588--5232651 Score: 85
Period size: 25 Copynumber: 2.5 Consensus size: 26
5232578 CTTTTTATAA
* * *
5232588 TTAACTAAAATTATTATAATGCCCTT
1 TTAACTATAATTATTAAAATACCCTT
5232614 TTAAC-ATAATTATTAAAATACCCTT
1 TTAACTATAATTATTAAAATACCCTT
*
5232639 TTTACTATAATTA
1 TTAACTATAATTA
5232652 GCCAAATTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 21 0.64
26 12 0.36
ACGTcount: A:0.41, C:0.14, G:0.02, T:0.44
Consensus pattern (26 bp):
TTAACTATAATTATTAAAATACCCTT
Found at i:5233128 original size:26 final size:28
Alignment explanation
Indices: 5233078--5233138 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
5233068 ACAAAATTAC
*
5233078 TAAAAAATATTTATTTTTTATTATTAAA
1 TAAAAAATATTTATATTTTATTATTAAA
* **
5233106 TAAAAACT-TTTATATTTTA-TATTTCA
1 TAAAAAATATTTATATTTTATTATTAAA
5233132 TAAAAAA
1 TAAAAAA
5233139 AATTGCAAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 11 0.39
27 10 0.36
28 7 0.25
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (28 bp):
TAAAAAATATTTATATTTTATTATTAAA
Found at i:5233439 original size:2 final size:2
Alignment explanation
Indices: 5233432--5233465 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
5233422 TATAATCTTT
5233432 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5233466 AAGGGATGCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5233624 original size:20 final size:20
Alignment explanation
Indices: 5233577--5233626 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
5233567 ATTAACACGT
**
5233577 ATAATATTTTTTTATATAAA
1 ATAATATTTTTGCATATAAA
5233597 ATATATATTTTTGCA-ATAGAA
1 ATA-ATATTTTTGCATATA-AA
5233618 ATAATATTT
1 ATAATATTT
5233627 GCATAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (20 bp):
ATAATATTTTTGCATATAAA
Found at i:5233822 original size:19 final size:19
Alignment explanation
Indices: 5233795--5233835 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
5233785 TTAATATATC
* *
5233795 TAATTTTATTATTTACTTT
1 TAATATTATCATTTACTTT
*
5233814 TAATATTATCATTTTCTTT
1 TAATATTATCATTTACTTT
5233833 TAA
1 TAA
5233836 CAAATAAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.63
Consensus pattern (19 bp):
TAATATTATCATTTACTTT
Found at i:5234421 original size:2 final size:2
Alignment explanation
Indices: 5234416--5234461 Score: 58
Period size: 2 Copynumber: 23.0 Consensus size: 2
5234406 TCCGCCCCTT
* *
5234416 TA TA TA TA TA TA CA TA TA TA -A GTA TA TA TA TA TA TA TA TA TT
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
5234458 TA TA
1 TA TA
5234462 AACATGAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
1 1 0.03
2 36 0.95
3 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (2 bp):
TA
Found at i:5235638 original size:28 final size:28
Alignment explanation
Indices: 5235606--5235691 Score: 76
Period size: 28 Copynumber: 3.2 Consensus size: 28
5235596 ATTAAGTTTA
5235606 AAATATTAATTTTTTAAATTAAAATATT
1 AAATATTAATTTTTTAAATTAAAATATT
* *
5235634 AAATAATAATTTTATT-AA-TATAATATAT
1 AAATATTAATTTT-TTAAATTAAAATAT-T
* *
5235662 AAAT-TTAA--ATTTAAATTAAAA-ATA
1 AAATATTAATTTTTTAAATTAAAATATT
5235686 AAATAT
1 AAATAT
5235692 ATACTTTTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
24 6 0.13
25 6 0.13
26 4 0.09
27 10 0.21
28 19 0.40
29 2 0.04
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (28 bp):
AAATATTAATTTTTTAAATTAAAATATT
Found at i:5237156 original size:16 final size:18
Alignment explanation
Indices: 5237137--5237172 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
5237127 TTATCCTTTC
5237137 TTAAA-AATT-ATATAAT
1 TTAAATAATTGATATAAT
5237153 TTAAATAATTGATATAAT
1 TTAAATAATTGATATAAT
5237171 TT
1 TT
5237173 TTAAAAGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.28
17 4 0.22
18 9 0.50
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (18 bp):
TTAAATAATTGATATAAT
Found at i:5237440 original size:32 final size:33
Alignment explanation
Indices: 5237374--5237442 Score: 104
Period size: 32 Copynumber: 2.1 Consensus size: 33
5237364 ATAAATAAAT
* *
5237374 AATAAAAAATATAATTATATTTATGCTTAAGGC
1 AATAAAAAATATAATTATATTTATACTCAAGGC
*
5237407 AATAAAAAA-ATAATTATATTTATACTCAGGGC
1 AATAAAAAATATAATTATATTTATACTCAAGGC
5237439 AATA
1 AATA
5237443 CGGAAAACCC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 24 0.73
33 9 0.27
ACGTcount: A:0.51, C:0.07, G:0.09, T:0.33
Consensus pattern (33 bp):
AATAAAAAATATAATTATATTTATACTCAAGGC
Found at i:5237963 original size:8 final size:8
Alignment explanation
Indices: 5237946--5237990 Score: 56
Period size: 8 Copynumber: 5.6 Consensus size: 8
5237936 ATTATAATAC
*
5237946 ATATATAT
1 ATATAAAT
5237954 ATATAAAT
1 ATATAAAT
5237962 ATATAAAT
1 ATATAAAT
*
5237970 AAATAAAT
1 ATATAAAT
5237978 A-ATAAAAT
1 ATAT-AAAT
5237986 ATATA
1 ATATA
5237991 CTTATATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 2 0.06
8 29 0.88
9 2 0.06
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
ATATAAAT
Found at i:5237965 original size:12 final size:12
Alignment explanation
Indices: 5237948--5237990 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
5237938 TATAATACAT
5237948 ATATATATATAA
1 ATATATATATAA
*
5237960 ATATATAAATAA
1 ATATATATATAA
*
5237972 ATAAATA-ATAA
1 ATATATATATAA
5237983 A-ATATATA
1 ATATATATA
5237991 CTTATATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 4 0.15
11 6 0.22
12 17 0.63
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
ATATATATATAA
Found at i:5238351 original size:7 final size:7
Alignment explanation
Indices: 5238341--5238373 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
5238331 AAAAAACTTA
5238341 AAAAAAC
1 AAAAAAC
5238348 AAAAAA-
1 AAAAAAC
5238354 ACAAAAAC
1 A-AAAAAC
5238362 AAAAAAC
1 AAAAAAC
5238369 AAAAA
1 AAAAA
5238374 TAAAAAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 1 0.04
7 22 0.92
8 1 0.04
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:5238365 original size:13 final size:13
Alignment explanation
Indices: 5238342--5238379 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
5238332 AAAAACTTAA
5238342 AAAAACAAAAAAAC
1 AAAAAC-AAAAAAC
5238356 AAAAACAAAAAAC
1 AAAAACAAAAAAC
*
5238369 AAAAATAAAAA
1 AAAAACAAAAA
5238380 GGGAAAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 17 0.74
14 6 0.26
ACGTcount: A:0.87, C:0.11, G:0.00, T:0.03
Consensus pattern (13 bp):
AAAAACAAAAAAC
Found at i:5238771 original size:7 final size:7
Alignment explanation
Indices: 5238761--5238793 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
5238751 AAAGGAAAAA
5238761 AAGTAAG
1 AAGTAAG
5238768 AAGTAAG
1 AAGTAAG
5238775 AAGTAAG
1 AAGTAAG
5238782 AAGTAAG
1 AAGTAAG
5238789 AAGTA
1 AAGTA
5238794 GAAAAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.27, T:0.15
Consensus pattern (7 bp):
AAGTAAG
Found at i:5239038 original size:15 final size:15
Alignment explanation
Indices: 5239020--5239050 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
5239010 AAAAGTAAAT
5239020 AGAAAAAATGAAAAA
1 AGAAAAAATGAAAAA
*
5239035 AGAAAAAGTGAAAAA
1 AGAAAAAATGAAAAA
5239050 A
1 A
5239051 AGTAATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.06
Consensus pattern (15 bp):
AGAAAAAATGAAAAA
Found at i:5240186 original size:13 final size:13
Alignment explanation
Indices: 5240168--5240193 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5240158 TAGAATAGAG
5240168 GTGTAGTCAAGTA
1 GTGTAGTCAAGTA
5240181 GTGTAGTCAAGTA
1 GTGTAGTCAAGTA
5240194 TTTTAGAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.31
Consensus pattern (13 bp):
GTGTAGTCAAGTA
Found at i:5240333 original size:62 final size:62
Alignment explanation
Indices: 5240231--5240387 Score: 156
Period size: 62 Copynumber: 2.5 Consensus size: 62
5240221 ACTTAAGAAA
* * ** **
5240231 ATTATTTTAATAAAATTATAATGTATAATTACTGTGTTTATGGCCAAATCAATGCAGTAATTG
1 ATTATTTTAA-AAAATTACAATGAATAATTACTGCATTTATGGCCAAAAAAATGCAGTAATTG
* * *** * *
5240294 ATTATTTTTAAAAATTACAATGAATAATTATTGCATTTATTTTCAAAAAAATGCTGTATTTG
1 ATTATTTTAAAAAATTACAATGAATAATTACTGCATTTATGGCCAAAAAAATGCAGTAATTG
5240356 ATT-TTTTAAATAAATTACAATG-ATCAATTACT
1 ATTATTTTAAA-AAATTACAATGAAT-AATTACT
5240388 ACGTCTCCTT
Statistics
Matches: 77, Mismatches: 15, Indels: 5
0.79 0.15 0.05
Matches are distributed among these distances:
61 8 0.10
62 60 0.78
63 9 0.12
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.43
Consensus pattern (62 bp):
ATTATTTTAAAAAATTACAATGAATAATTACTGCATTTATGGCCAAAAAAATGCAGTAATTG
Found at i:5240559 original size:14 final size:15
Alignment explanation
Indices: 5240533--5240561 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
5240523 CTTCTCAGCG
5240533 CATTAATTGGCTTAT
1 CATTAATTGGCTTAT
5240548 CATTAA-TGGCTTAT
1 CATTAATTGGCTTAT
5240562 AATGTCATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.45
Consensus pattern (15 bp):
CATTAATTGGCTTAT
Found at i:5240562 original size:104 final size:104
Alignment explanation
Indices: 5240393--5240622 Score: 325
Period size: 104 Copynumber: 2.2 Consensus size: 104
5240383 TTACTACGTC
* ** * *
5240393 TCCTTGAATAAAAATGCAGTAATTGGCTTCTCAGCACATTAATTGGCTTATCATTAATGGGTTAT
1 TCCTTGAATAGAAACACAATAATTGGCTTCTCAGCACATTAATTGGCTTATCATTAATGGCTTAT
* * * *
5240458 AGTGTCATTAATTGGCTTATTATTGGCAATTATTGTATT
66 AATGTCATTAATTGGCTTATCATTGGCAATTACTATATT
* * *
5240497 TTCTTGAATATAAACACAATAATTGGCTTCTCAGCGCATTAATTGGCTTATCATTAATGGCTTAT
1 TCCTTGAATAGAAACACAATAATTGGCTTCTCAGCACATTAATTGGCTTATCATTAATGGCTTAT
* *
5240562 AATGTCATTAATTGGTTTATCATTGGCAATTACTATGTT
66 AATGTCATTAATTGGCTTATCATTGGCAATTACTATATT
*
5240601 TCCTTGAATAGAAACATAATAA
1 TCCTTGAATAGAAACACAATAA
5240623 ATAATAACAA
Statistics
Matches: 110, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
104 110 1.00
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.40
Consensus pattern (104 bp):
TCCTTGAATAGAAACACAATAATTGGCTTCTCAGCACATTAATTGGCTTATCATTAATGGCTTAT
AATGTCATTAATTGGCTTATCATTGGCAATTACTATATT
Found at i:5241447 original size:42 final size:42
Alignment explanation
Indices: 5241400--5241481 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
5241390 TCAAATAAAT
* *
5241400 TTTGGGTTGAAGAAAA-GCCTTAAATGATGATTATTTAAGGTG
1 TTTGGGTT-AAAAAAATGCCTTAAATGATCATTATTTAAGGTG
5241442 TTTGGGTTAAAAAAATGCCTTAAATGATCATTATTTAAGG
1 TTTGGGTTAAAAAAATGCCTTAAATGATCATTATTTAAGG
5241482 CACTTTTTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
41 6 0.16
42 31 0.84
ACGTcount: A:0.35, C:0.06, G:0.22, T:0.37
Consensus pattern (42 bp):
TTTGGGTTAAAAAAATGCCTTAAATGATCATTATTTAAGGTG
Found at i:5241511 original size:43 final size:42
Alignment explanation
Indices: 5241451--5241540 Score: 126
Period size: 43 Copynumber: 2.1 Consensus size: 42
5241441 GTTTGGGTTA
* *
5241451 AAAAAATGCCTTAAATGATCATTATTTAAGGCACTTTTTTCTT
1 AAAAAATGCCTTAAATGATCATCATTTAAGGCA-TTTTTCCTT
* * *
5241494 AAAAAATGCCTTTAATGATGATCATTTAAGGTATTTTTCCTT
1 AAAAAATGCCTTAAATGATCATCATTTAAGGCATTTTTCCTT
5241536 AAAAA
1 AAAAA
5241541 CATCTCCAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 13 0.31
43 29 0.69
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (42 bp):
AAAAAATGCCTTAAATGATCATCATTTAAGGCATTTTTCCTT
Found at i:5249185 original size:60 final size:62
Alignment explanation
Indices: 5249100--5249251 Score: 168
Period size: 62 Copynumber: 2.5 Consensus size: 62
5249090 TTAAGGTATT
* * *
5249100 TTTTTGGCCAAAAACACCTTAAATAATCCCCCAA-AA-AATAGGAGGGGATTATTTAAAGC-A
1 TTTTTGGCCAAAAATACCTTGAATAATCCCCCAATAAGAATAGAAGGGGATTA-TTAAAGCTA
** ** * ** *
5249160 TTTTTGGCCAAAAATGTCTTGAATAATCCCTTAATAAGAGTTTAAGGGGATTATTCAAGCTA
1 TTTTTGGCCAAAAATACCTTGAATAATCCCCCAATAAGAATAGAAGGGGATTATTAAAGCTA
5249222 TTTTTGGCCAAAAATACCTTGAATAA-CCCC
1 TTTTTGGCCAAAAATACCTTGAATAATCCCC
5249252 ATTCAATTTT
Statistics
Matches: 75, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
60 28 0.37
61 11 0.15
62 36 0.48
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (62 bp):
TTTTTGGCCAAAAATACCTTGAATAATCCCCCAATAAGAATAGAAGGGGATTATTAAAGCTA
Found at i:5250618 original size:15 final size:15
Alignment explanation
Indices: 5250598--5250650 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
5250588 AGTAATCGCC
5250598 AATGATAAACCAATT
1 AATGATAAACCAATT
*
5250613 AATGATACTATAACCCATT
1 AATG--A-TA-AACCAATT
*
5250632 AATGATAAGCCAATT
1 AATGATAAACCAATT
5250647 AATG
1 AATG
5250651 CACTAAGAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.45
16 2 0.06
17 2 0.06
18 2 0.06
19 11 0.35
ACGTcount: A:0.47, C:0.15, G:0.09, T:0.28
Consensus pattern (15 bp):
AATGATAAACCAATT
Found at i:5250904 original size:104 final size:104
Alignment explanation
Indices: 5250573--5250907 Score: 418
Period size: 104 Copynumber: 3.2 Consensus size: 104
5250563 ATTGTGTTTT
* * * *
5250573 TATTCAAGGAAACGTAGTAATCGCCAATGATAAACCAATTAATGATACTATAACCCATTAATGAT
1 TATTCAAGGAAACGCAATAATTGCCAATGATAAACCAATTAATGACACTATAACCCATTAATGAT
* ** *
5250638 AAGCCAATTAATGCACTAAGAAGCCAATTATTGTATTTC
66 AAGTCAATTAATGTGCTAAGAAGCCAATTACTGTATTTC
* ** * * *
5250677 TATTCAAGAAAATACAATACTTGCCAATGACAAACCAATTAACGACACTATAACCCATTAATGAT
1 TATTCAAGGAAACGCAATAATTGCCAATGATAAACCAATTAATGACACTATAACCCATTAATGAT
* * *
5250742 AAGTCAATTAATGTGTTGAGAAGCCAATTACTGCATTTC
66 AAGTCAATTAATGTGCTAAGAAGCCAATTACTGTATTTC
* * * * * * *
5250781 TATTCAAAGAAATGCAATAATTACCAATTATAAGCCAATTAATAACACCATAACCCATTAATGAT
1 TATTCAAGGAAACGCAATAATTGCCAATGATAAACCAATTAATGACACTATAACCCATTAATGAT
* * *
5250846 AAGTCAATTAATGTGCTAAGAAACCAATTACTGTGTTTT
66 AAGTCAATTAATGTGCTAAGAAGCCAATTACTGTATTTC
*
5250885 TATTCAAGGAAACGTAATAATTG
1 TATTCAAGGAAACGCAATAATTG
5250908 ATTATTGTAA
Statistics
Matches: 193, Mismatches: 38, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
104 193 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (104 bp):
TATTCAAGGAAACGCAATAATTGCCAATGATAAACCAATTAATGACACTATAACCCATTAATGAT
AAGTCAATTAATGTGCTAAGAAGCCAATTACTGTATTTC
Found at i:5252377 original size:2 final size:2
Alignment explanation
Indices: 5252365--5252403 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
5252355 GTAATTACCT
* *
5252365 TA TA TA AA TA TA TA TA TA CA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5252404 TTGGATTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:5255511 original size:58 final size:58
Alignment explanation
Indices: 5255421--5255543 Score: 210
Period size: 58 Copynumber: 2.1 Consensus size: 58
5255411 AGTTAAGAAT
5255421 GAGAAAAATAAAGTTTTATGAGTATTTAGCATCAAAATTTGTATCCATGCAATCACGA
1 GAGAAAAATAAAGTTTTATGAGTATTTAGCATCAAAATTTGTATCCATGCAATCACGA
* * *
5255479 GAGAAAGATAAAGTTTTATGAGTATTTAGCATCAAGATTTGTATCCATGCAATCACAA
1 GAGAAAAATAAAGTTTTATGAGTATTTAGCATCAAAATTTGTATCCATGCAATCACGA
*
5255537 CAGAAAA
1 GAGAAAA
5255544 CTACTATGCT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.29
Consensus pattern (58 bp):
GAGAAAAATAAAGTTTTATGAGTATTTAGCATCAAAATTTGTATCCATGCAATCACGA
Found at i:5255628 original size:32 final size:32
Alignment explanation
Indices: 5255575--5255641 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
5255565 GGTGAAAGCA
5255575 GAGAATAGGGGAAATGATTGAAAGGAAACAAT
1 GAGAATAGGGGAAATGATTGAAAGGAAACAAT
* * *
5255607 GAGAATAGTGGAGAT-ACTTGAAAGGAAACCAT
1 GAGAATAGGGGAAATGA-TTGAAAGGAAACAAT
5255639 GAG
1 GAG
5255642 GTCATATGCT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 1 0.03
32 30 0.97
ACGTcount: A:0.46, C:0.06, G:0.31, T:0.16
Consensus pattern (32 bp):
GAGAATAGGGGAAATGATTGAAAGGAAACAAT
Found at i:5255711 original size:92 final size:92
Alignment explanation
Indices: 5255554--5255735 Score: 310
Period size: 92 Copynumber: 2.0 Consensus size: 92
5255544 CTACTATGCT
*
5255554 TATGCTTGGCAGGTGAAAGCAGAGAATAGGGGAAATGATTGAAAGGAAACAATGAGAATAGTGGA
1 TATGCTTGGCAGGTGAAAGCAGAGAACAGGGGAAATGATTGAAAGGAAACAATGAGAATAGTGGA
*
5255619 GATACTTGAAAGGAAACCATGAGGTCA
66 GACACTTGAAAGGAAACCATGAGGTCA
* * * *
5255646 TATGCTTGGCAGGTGACAGCAGAGAACAGGGGAAGTGGTTGAAAGGAAACAGTGAGAATAGTGGA
1 TATGCTTGGCAGGTGAAAGCAGAGAACAGGGGAAATGATTGAAAGGAAACAATGAGAATAGTGGA
5255711 GACACTTGAAAGGAAACCATGAGGT
66 GACACTTGAAAGGAAACCATGAGGT
5255736 GTGAGTTGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
92 84 1.00
ACGTcount: A:0.39, C:0.10, G:0.34, T:0.18
Consensus pattern (92 bp):
TATGCTTGGCAGGTGAAAGCAGAGAACAGGGGAAATGATTGAAAGGAAACAATGAGAATAGTGGA
GACACTTGAAAGGAAACCATGAGGTCA
Found at i:5260547 original size:45 final size:45
Alignment explanation
Indices: 5260483--5260573 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
5260473 ATTTTGTTTG
5260483 TTATATAAATTGAGTGATGAAGGTAAACATCATCTAAACACTAGT
1 TTATATAAATTGAGTGATGAAGGTAAACATCATCTAAACACTAGT
5260528 TTATATAAATTGAGTGATGAAGGTAAACATCATCTAAACACTAGT
1 TTATATAAATTGAGTGATGAAGGTAAACATCATCTAAACACTAGT
5260573 T
1 T
5260574 AAGTTTCAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (45 bp):
TTATATAAATTGAGTGATGAAGGTAAACATCATCTAAACACTAGT
Found at i:5262936 original size:22 final size:22
Alignment explanation
Indices: 5262892--5262938 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
5262882 CCAAAACTCT
* *
5262892 AATATAATTATATAGAATCTAA
1 AATATAATTACATAGAATATAA
5262914 AATATAATTACATCA-AATATAA
1 AATATAATTACAT-AGAATATAA
5262936 AAT
1 AAT
5262939 TAAAGAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.57, C:0.06, G:0.02, T:0.34
Consensus pattern (22 bp):
AATATAATTACATAGAATATAA
Found at i:5263950 original size:2 final size:2
Alignment explanation
Indices: 5263945--5263969 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
5263935 ATTTTTTTTC
5263945 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
5263970 GATACTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5267558 original size:2 final size:2
Alignment explanation
Indices: 5267551--5267577 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
5267541 GTCATCAATT
5267551 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
5267578 TTGCTTGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:5268622 original size:16 final size:16
Alignment explanation
Indices: 5268598--5268631 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
5268588 ATATACACAT
*
5268598 AATACATACAAAGAAC
1 AATAAATACAAAGAAC
5268614 AATAAATACAAAGAAC
1 AATAAATACAAAGAAC
5268630 AA
1 AA
5268632 CGTAAAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.68, C:0.15, G:0.06, T:0.12
Consensus pattern (16 bp):
AATAAATACAAAGAAC
Found at i:5269893 original size:19 final size:21
Alignment explanation
Indices: 5269850--5269896 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
5269840 TATCAACTAC
* *
5269850 CATGCCATTAATATAAATTAT
1 CATGCAATTAATATAAATAAT
5269871 CATGCAATTAAT-T-AATAAT
1 CATGCAATTAATATAAATAAT
5269890 CATGCAA
1 CATGCAA
5269897 AAAAATAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 12 0.50
20 1 0.04
21 11 0.46
ACGTcount: A:0.45, C:0.15, G:0.06, T:0.34
Consensus pattern (21 bp):
CATGCAATTAATATAAATAAT
Done.