Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 33 of 77
Found at i:6672900 original size:2 final size:2
Alignment explanation
Indices: 6672893--6672920 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
6672883 TTTAAGCAAC
6672893 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
6672921 ATACATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:6672930 original size:2 final size:2
Alignment explanation
Indices: 6672920--6672955 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
6672910 TCTCTCTCTC
*
6672920 TA TA CA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6672956 ACATCTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:6676492 original size:8 final size:8
Alignment explanation
Indices: 6676479--6676505 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
6676469 ATAAAAAATT
6676479 AATTTTAA
1 AATTTTAA
6676487 AATTTTAA
1 AATTTTAA
6676495 AATTTTAA
1 AATTTTAA
6676503 AAT
1 AAT
6676506 CCTAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
AATTTTAA
Found at i:6677625 original size:12 final size:12
Alignment explanation
Indices: 6677608--6677637 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
6677598 TTTTATGGTC
*
6677608 TTATTTGTTTGT
1 TTATTTGTTTGA
6677620 TTATTTGTTTGA
1 TTATTTGTTTGA
6677632 TTATTT
1 TTATTT
6677638 ATCAATTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (12 bp):
TTATTTGTTTGA
Found at i:6682128 original size:31 final size:31
Alignment explanation
Indices: 6682091--6682154 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 31
6682081 TGGTGAAGAG
**
6682091 AAAAAAATGAAAAAAGTGAAAAACTATAAAA
1 AAAAAAATGAAAAAAGTGAAAAAAAATAAAA
** *
6682122 AAAAAAATGTGAAATGTGAAAAAAAATAAAA
1 AAAAAAATGAAAAAAGTGAAAAAAAATAAAA
6682153 AA
1 AA
6682155 TGAAAGAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.73, C:0.02, G:0.11, T:0.14
Consensus pattern (31 bp):
AAAAAAATGAAAAAAGTGAAAAAAAATAAAA
Found at i:6683368 original size:20 final size:21
Alignment explanation
Indices: 6683320--6683369 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
6683310 TAATCTCTAA
*
6683320 GAATTTTGAAATGAAAATCTTT
1 GAATTTT-TAATGAAAATCTTT
* *
6683342 GAGTTTTTAATGAGAATC-TT
1 GAATTTTTAATGAAAATCTTT
6683362 GAATTTTT
1 GAATTTTT
6683370 TTTATGTGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 9 0.38
21 9 0.38
22 6 0.25
ACGTcount: A:0.34, C:0.04, G:0.16, T:0.46
Consensus pattern (21 bp):
GAATTTTTAATGAAAATCTTT
Found at i:6683399 original size:21 final size:21
Alignment explanation
Indices: 6683373--6683412 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6683363 AATTTTTTTT
* *
6683373 ATGTGAATCTTTAAATATTAG
1 ATGTGAACCCTTAAATATTAG
6683394 ATGTGAACCCTTAAATATT
1 ATGTGAACCCTTAAATATT
6683413 TTGAATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (21 bp):
ATGTGAACCCTTAAATATTAG
Found at i:6683466 original size:24 final size:23
Alignment explanation
Indices: 6683437--6683557 Score: 69
Period size: 24 Copynumber: 5.4 Consensus size: 23
6683427 TTGAATTTAG
6683437 ATGTGAAACTCTAAAATTTCTTGA
1 ATGTGAAACT-TAAAATTTCTTGA
* *
6683461 ATGTGAATCTTTAAA---CTTGA
1 ATGTGAAACTTAAAATTTCTTGA
* **
6683481 ATGTGAGTA-TTTGAATTT-TT-A
1 ATGTGA-AACTTAAAATTTCTTGA
*
6683502 GATGTGAAACTTTAAAATTTCCTGA
1 -ATGTGAAAC-TTAAAATTTCTTGA
* *
6683527 ATGTGAATCTTTAAAATTT-TAG-
1 ATGTGAAAC-TTAAAATTTCTTGA
6683549 ATGTGAAAC
1 ATGTGAAAC
6683558 ACTAAAATAT
Statistics
Matches: 75, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
20 16 0.21
21 2 0.03
22 16 0.21
23 12 0.16
24 28 0.37
25 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.40
Consensus pattern (23 bp):
ATGTGAAACTTAAAATTTCTTGA
Found at i:6683547 original size:46 final size:45
Alignment explanation
Indices: 6683477--6683610 Score: 135
Period size: 45 Copynumber: 3.0 Consensus size: 45
6683467 ATCTTTAAAC
* * * * **
6683477 TTGAATGTGAGTATTTGAATTTTTAGATGTGAAACTTTAAAAT-T
1 TTGAATGTGAATCTTTAAAATTTTAGATGTGAAACACTAAAATAT
6683521 TCCTGAATGTGAATCTTTAAAATTTTAGATGTGAAACACTAAAATAT
1 T--TGAATGTGAATCTTTAAAATTTTAGATGTGAAACACTAAAATAT
* * * * * *
6683568 TTTAATGAGAATCTTTAAAATCTTAGAAGTGAATCCCTAAAAT
1 TTGAATGTGAATCTTTAAAATTTTAGATGTGAAACACTAAAAT
6683611 TAAAAAAAAA
Statistics
Matches: 75, Mismatches: 12, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
44 1 0.01
45 36 0.48
46 36 0.48
47 2 0.03
ACGTcount: A:0.39, C:0.08, G:0.14, T:0.39
Consensus pattern (45 bp):
TTGAATGTGAATCTTTAAAATTTTAGATGTGAAACACTAAAATAT
Found at i:6683555 original size:22 final size:22
Alignment explanation
Indices: 6683373--6683611 Score: 116
Period size: 22 Copynumber: 10.8 Consensus size: 22
6683363 AATTTTTTTT
*
6683373 ATGTGAATCTTT-AAATATTAG
1 ATGTGAATCTTTAAAATTTTAG
* *
6683394 ATGTGAACCCTTAAATATTTT-G
1 ATGTGAATCTTTAAA-ATTTTAG
* * * *
6683416 AATATAAACCTTT-GAA-TTTAG
1 -ATGTGAATCTTTAAAATTTTAG
* * *
6683437 ATGTGAAACTCTAAAATTTCTTG
1 ATGTGAATCTTTAAAATTT-TAG
* *
6683460 AATGTGAATCTTT-AAACTTGA-
1 -ATGTGAATCTTTAAAATTTTAG
* * * *
6683481 ATGTGAGTATTTGAATTTTTAG
1 ATGTGAATCTTTAAAATTTTAG
*
6683503 ATGTGAAACTTTAAAATTTCCT-G
1 ATGTGAATCTTTAAAATTT--TAG
6683526 AATGTGAATCTTTAAAATTTTAG
1 -ATGTGAATCTTTAAAATTTTAG
* * *
6683549 ATGTGAAACACTAAAATATTTTA-
1 ATGTGAATC-TTTAAA-ATTTTAG
* *
6683572 ATGAGAATCTTTAAAATCTTAG
1 ATGTGAATCTTTAAAATTTTAG
* **
6683594 AAGTGAATCCCTAAAATT
1 ATGTGAATCTTTAAAATT
6683612 AAAAAAAAAA
Statistics
Matches: 159, Mismatches: 42, Indels: 33
0.68 0.18 0.14
Matches are distributed among these distances:
20 21 0.13
21 24 0.15
22 46 0.29
23 33 0.21
24 35 0.22
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.39
Consensus pattern (22 bp):
ATGTGAATCTTTAAAATTTTAG
Found at i:6683588 original size:23 final size:23
Alignment explanation
Indices: 6683497--6683588 Score: 73
Period size: 23 Copynumber: 4.0 Consensus size: 23
6683487 GTATTTGAAT
*
6683497 TTTTAGATGTGAAACTTTAAAAT-
1 TTTTA-ATGTGAATCTTTAAAATA
*
6683520 TTCCTGAATGTGAATCTTT-AAA-A
1 TT--TTAATGTGAATCTTTAAAATA
* **
6683543 TTTTAGATGTGAAACACTAAAATA
1 TTTTA-ATGTGAATCTTTAAAATA
*
6683567 TTTTAATGAGAATCTTTAAAAT
1 TTTTAATGTGAATCTTTAAAAT
6683589 CTTAGAAGTG
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
21 2 0.04
22 9 0.17
23 23 0.43
24 17 0.32
25 2 0.04
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (23 bp):
TTTTAATGTGAATCTTTAAAATA
Found at i:6683806 original size:31 final size:31
Alignment explanation
Indices: 6683757--6683881 Score: 142
Period size: 31 Copynumber: 4.0 Consensus size: 31
6683747 GAATATGAGT
* *
6683757 TCTTGATAATCAAAATTCTTGCAAAACTAAAA
1 TCTTGAGAATC-AAATTCTTGCGAAACTAAAA
* * *
6683789 TTTTGAGAATCAAATTCTTGCGAAATTGAAA
1 TCTTGAGAATCAAATTCTTGCGAAACTAAAA
* * * *
6683820 TCTTAAGAATCATATTTTTGTGAAACTAAAA
1 TCTTGAGAATCAAATTCTTGCGAAACTAAAA
* *
6683851 TCTTGAGAATCAAATTCTTGTGAAAATAAAA
1 TCTTGAGAATCAAATTCTTGCGAAACTAAAA
6683882 ATCAAATTTG
Statistics
Matches: 77, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
31 68 0.88
32 9 0.12
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (31 bp):
TCTTGAGAATCAAATTCTTGCGAAACTAAAA
Found at i:6683915 original size:18 final size:18
Alignment explanation
Indices: 6683892--6683955 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
6683882 ATCAAATTTG
6683892 CAAATCTGAAAATTCTTA
1 CAAATCTGAAAATTCTTA
* *
6683910 CAAATCT-AAAATCCTTG
1 CAAATCTGAAAATTCTTA
*
6683927 CAAATCTAAAAATT-TATA
1 CAAATCTGAAAATTCT-TA
*
6683945 CAAATATGAAA
1 CAAATCTGAAA
6683956 TCCTTGTGAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
17 16 0.42
18 22 0.58
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.30
Consensus pattern (18 bp):
CAAATCTGAAAATTCTTA
Found at i:6683930 original size:17 final size:17
Alignment explanation
Indices: 6683889--6683937 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
6683879 AAAATCAAAT
*
6683889 TTGCAAATCTGAAAATTC
1 TTGCAAATCT-AAAATCC
*
6683907 TTACAAATCTAAAATCC
1 TTGCAAATCTAAAATCC
6683924 TTGCAAATCTAAAA
1 TTGCAAATCTAAAA
6683938 ATTTATACAA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 19 0.68
18 9 0.32
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (17 bp):
TTGCAAATCTAAAATCC
Found at i:6683939 original size:35 final size:35
Alignment explanation
Indices: 6683889--6683961 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
6683879 AAAATCAAAT
* *
6683889 TTGCAAATCTGAAAATTCT-TACAAATCTAAAATCC
1 TTGCAAATCTAAAAATT-TATACAAATATAAAATCC
*
6683924 TTGCAAATCTAAAAATTTATACAAATATGAAATCC
1 TTGCAAATCTAAAAATTTATACAAATATAAAATCC
6683959 TTG
1 TTG
6683962 TGAATTTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 1 0.03
35 33 0.97
ACGTcount: A:0.44, C:0.16, G:0.07, T:0.33
Consensus pattern (35 bp):
TTGCAAATCTAAAAATTTATACAAATATAAAATCC
Found at i:6683971 original size:17 final size:17
Alignment explanation
Indices: 6683951--6683983 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6683941 TATACAAATA
*
6683951 TGAAATCCTTGTGAATT
1 TGAAATACTTGTGAATT
6683968 TGAAATACTTGTGAAT
1 TGAAATACTTGTGAAT
6683984 CTCAAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.39
Consensus pattern (17 bp):
TGAAATACTTGTGAATT
Found at i:6684000 original size:18 final size:18
Alignment explanation
Indices: 6683979--6684062 Score: 89
Period size: 18 Copynumber: 4.7 Consensus size: 18
6683969 GAAATACTTG
*
6683979 TGAATCTCAAAATTTTTA
1 TGAATTTCAAAATTTTTA
*
6683997 TGAATTTCAAAATTTTTG
1 TGAATTTCAAAATTTTTA
* *
6684015 TGAATAT-GAAATTTTTA
1 TGAATTTCAAAATTTTTA
* * *
6684032 CGAATTTGAAAATTATTA
1 TGAATTTCAAAATTTTTA
*
6684050 TGAATTTGAAAAT
1 TGAATTTCAAAAT
6684063 CTTGTGAATA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
17 13 0.24
18 42 0.76
ACGTcount: A:0.40, C:0.05, G:0.11, T:0.44
Consensus pattern (18 bp):
TGAATTTCAAAATTTTTA
Found at i:6684025 original size:53 final size:52
Alignment explanation
Indices: 6683953--6684073 Score: 134
Period size: 53 Copynumber: 2.3 Consensus size: 52
6683943 TACAAATATG
* ** *
6683953 AAATCCTTGTGAATTTGAAATACTTGTGAATCTCAAAATTTTTATGAATTTCA
1 AAAT-CTTGTGAATATGAAATACTTACGAATCTCAAAATTATTATGAATTTCA
* ** * * *
6684006 AAATTTTTGTGAATATGAAATTTTTACGAATTTGAAAATTATTATGAATTTGA
1 AAA-TCTTGTGAATATGAAATACTTACGAATCTCAAAATTATTATGAATTTCA
6684059 AAATCTTGTGAATAT
1 AAATCTTGTGAATAT
6684074 TTGAATTACA
Statistics
Matches: 56, Mismatches: 11, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
52 11 0.20
53 44 0.79
54 1 0.02
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (52 bp):
AAATCTTGTGAATATGAAATACTTACGAATCTCAAAATTATTATGAATTTCA
Found at i:6684026 original size:17 final size:17
Alignment explanation
Indices: 6683951--6684071 Score: 80
Period size: 18 Copynumber: 6.9 Consensus size: 17
6683941 TATACAAATA
*
6683951 TGAAATCCTTGTGAATT
1 TGAAATTCTTGTGAATT
*
6683968 TGAAATACTTGTGAATCT
1 TGAAATTCTTGTGAAT-T
** * *
6683986 CAAAATTTTTATGAATT
1 TGAAATTCTTGTGAATT
* * *
6684003 TCAAAATTTTTGTGAATA
1 T-GAAATTCTTGTGAATT
* **
6684021 TGAAATTTTTACGAATT
1 TGAAATTCTTGTGAATT
* *
6684038 TGAAAATTATTATGAATT
1 TG-AAATTCTTGTGAATT
*
6684056 TGAAAATCTTGTGAAT
1 TGAAATTCTTGTGAAT
6684072 ATTTGAATTA
Statistics
Matches: 83, Mismatches: 18, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
17 41 0.49
18 42 0.51
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (17 bp):
TGAAATTCTTGTGAATT
Found at i:6684027 original size:35 final size:35
Alignment explanation
Indices: 6683988--6684060 Score: 101
Period size: 35 Copynumber: 2.1 Consensus size: 35
6683978 GTGAATCTCA
* * *
6683988 AAATTTTTATGAATTTCAAAATTTTTGTGAATATG
1 AAATTTTTACGAATTTCAAAATTATTATGAATATG
* *
6684023 AAATTTTTACGAATTTGAAAATTATTATGAATTTG
1 AAATTTTTACGAATTTCAAAATTATTATGAATATG
6684058 AAA
1 AAA
6684061 ATCTTGTGAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.41, C:0.03, G:0.11, T:0.45
Consensus pattern (35 bp):
AAATTTTTACGAATTTCAAAATTATTATGAATATG
Found at i:6687831 original size:30 final size:30
Alignment explanation
Indices: 6687797--6687864 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
6687787 TGGCTTTGTT
6687797 TATTTTGCA-TGAATTAAACA-TTTAAATATC
1 TATTTT-CATTGAATTAAA-ATTTTAAATATC
* *
6687827 TATTTTTATTTAATTAAAATTTTAAATATC
1 TATTTTCATTGAATTAAAATTTTAAATATC
6687857 TATTTTCA
1 TATTTTCA
6687865 CCCCAATTGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 2 0.06
30 31 0.94
ACGTcount: A:0.38, C:0.07, G:0.03, T:0.51
Consensus pattern (30 bp):
TATTTTCATTGAATTAAAATTTTAAATATC
Found at i:6696613 original size:53 final size:52
Alignment explanation
Indices: 6696516--6696673 Score: 185
Period size: 52 Copynumber: 3.0 Consensus size: 52
6696506 CATTCAAGAA
* * * *
6696516 GACTTGCAAAAGAAGGATTCTAAGAA-AAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTACAAGAGAAGAATTCCAAGAAGAAAG-GGATTCTTAATAGGTAAGTTT
*
6696568 GACTTGCAAGAGAAGAATTCCAA-AAGGGAAAGGGATTCTTAATAGGTAAGTTT
1 GACTTACAAGAGAAGAATTCCAAGAA--GAAAGGGATTCTTAATAGGTAAGTTT
* * * * *
6696621 GACTTACAGGAGAAGAATTCTAAGAAGAGAGGGATTCTTAATGGGCAAGTTT
1 GACTTACAAGAGAAGAATTCCAAGAAGAAAGGGATTCTTAATAGGTAAGTTT
6696673 G
1 G
6696674 TATGGTTATA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
51 2 0.02
52 44 0.47
53 41 0.44
54 6 0.06
ACGTcount: A:0.39, C:0.09, G:0.27, T:0.25
Consensus pattern (52 bp):
GACTTACAAGAGAAGAATTCCAAGAAGAAAGGGATTCTTAATAGGTAAGTTT
Found at i:6697194 original size:30 final size:31
Alignment explanation
Indices: 6697158--6697225 Score: 111
Period size: 30 Copynumber: 2.2 Consensus size: 31
6697148 AGGCTTTTAG
*
6697158 CCCAACAAATGGTATCAGAGCTGTAGTGTT-
1 CCCAACAAATGGTATCAGAGCTATAGTGTTC
*
6697188 CCCAACAAATGGTATCAGAGCTATGGTGTTC
1 CCCAACAAATGGTATCAGAGCTATAGTGTTC
6697219 CCCAACA
1 CCCAACA
6697226 CATTGAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
30 28 0.80
31 7 0.20
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.24
Consensus pattern (31 bp):
CCCAACAAATGGTATCAGAGCTATAGTGTTC
Found at i:6699141 original size:22 final size:22
Alignment explanation
Indices: 6699116--6699165 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
6699106 ATGAAAGGAA
*
6699116 AAGAAACCAATGTATTTTGAAC
1 AAGAAACCAATATATTTTGAAC
6699138 AAGAAACCAATATATTTTGAAC
1 AAGAAACCAATATATTTTGAAC
6699160 AAGAAA
1 AAGAAA
6699166 AGTGAAGCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.24
Consensus pattern (22 bp):
AAGAAACCAATATATTTTGAAC
Found at i:6702992 original size:18 final size:20
Alignment explanation
Indices: 6702969--6703014 Score: 60
Period size: 22 Copynumber: 2.3 Consensus size: 20
6702959 GCTCACATTT
6702969 ATTAATT-TA-ATATAATAA
1 ATTAATTGTATATATAATAA
6702987 ATTAATTTGTATTATATAATAA
1 ATTAA-TTGTA-TATATAATAA
6703009 ATTAAT
1 ATTAAT
6703015 AAATAAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
18 5 0.21
19 2 0.08
20 2 0.08
21 1 0.04
22 14 0.58
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTAATTGTATATATAATAA
Found at i:6704669 original size:18 final size:18
Alignment explanation
Indices: 6704646--6704689 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
6704636 TTATCCTAAA
* *
6704646 TATAATTTTTCTTATTTT
1 TATAATTATTATTATTTT
6704664 TATAA-TATTATTATTTT
1 TATAATTATTATTATTTT
6704681 T-TAATTATT
1 TATAATTATT
6704690 TTCTTCCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 3 0.13
17 15 0.65
18 5 0.22
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (18 bp):
TATAATTATTATTATTTT
Found at i:6706663 original size:16 final size:16
Alignment explanation
Indices: 6706644--6706674 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6706634 TTTTGTCAGT
*
6706644 TTTTTATTTTTTAATA
1 TTTTTATTTATTAATA
6706660 TTTTTATTTATTAAT
1 TTTTTATTTATTAAT
6706675 TTATTACTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTTATTTATTAATA
Found at i:6712116 original size:95 final size:95
Alignment explanation
Indices: 6712003--6712191 Score: 236
Period size: 95 Copynumber: 2.0 Consensus size: 95
6711993 TTATCTTAAG
** * * ** * * * *
6712003 TCGAGCTCGAGTTTAAAAAATAAAA-TTCGATCGAATTCGAGTCGAGTTTCGAATCTTGAATTTC
1 TCGAGCTCGAACTAAAAAAATAAAACTT-GATCGAATTCAAACCGAATTTCAAACCTCGAATTTC
* * *
6712067 AAATCGAGCTCAAGCTTAATATTGTATCAAT
65 AAATCAAACTCAAGCTTAATATTATATCAAT
6712098 TCGAGCTCGAACTAAAAAAATAAAACTTGATCGAATTCAAACCGAATTTCAAACCTCGAATTTCA
1 TCGAGCTCGAACTAAAAAAATAAAACTTGATCGAATTCAAACCGAATTTCAAACCTCGAATTTCA
*
6712163 AATCAAACTCAAGTTTAATATTATATCAA
66 AATCAAACTCAAGCTTAATATTATATCAA
6712192 CATGAACTCG
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
95 77 0.97
96 2 0.03
ACGTcount: A:0.40, C:0.17, G:0.13, T:0.30
Consensus pattern (95 bp):
TCGAGCTCGAACTAAAAAAATAAAACTTGATCGAATTCAAACCGAATTTCAAACCTCGAATTTCA
AATCAAACTCAAGCTTAATATTATATCAAT
Found at i:6712150 original size:12 final size:14
Alignment explanation
Indices: 6712128--6712164 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
6712118 TAAAACTTGA
6712128 TCGAA-TTCAAA-C
1 TCGAATTTCAAACC
6712140 -CGAATTTCAAACC
1 TCGAATTTCAAACC
6712153 TCGAATTTCAAA
1 TCGAATTTCAAA
6712165 TCAAACTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 4 0.18
12 6 0.27
13 1 0.05
14 11 0.50
ACGTcount: A:0.41, C:0.24, G:0.08, T:0.27
Consensus pattern (14 bp):
TCGAATTTCAAACC
Found at i:6714125 original size:38 final size:37
Alignment explanation
Indices: 6714072--6714147 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 37
6714062 GGCCGACTAT
*
6714072 ATCTGCTGTTATTTCAATCCTAAACAGTGAGATTGTAG
1 ATCTGCTGTTATTTCAATCCTAAACAGCGAGA-TGTAG
* *
6714110 ATCTGCTGTTTTTTCAATGCTAAACAGCGAGATGTAG
1 ATCTGCTGTTATTTCAATCCTAAACAGCGAGATGTAG
6714147 A
1 A
6714148 GTCCCCTTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
37 6 0.17
38 29 0.83
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.36
Consensus pattern (37 bp):
ATCTGCTGTTATTTCAATCCTAAACAGCGAGATGTAG
Found at i:6716906 original size:18 final size:19
Alignment explanation
Indices: 6716885--6716931 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
6716875 TAATTAATAA
6716885 ATTTAATTGA-ATTTTTA-T
1 ATTTAATT-ATATTTTTATT
*
6716903 ATTTAAATATATTTTTATT
1 ATTTAATTATATTTTTATT
6716922 ATTTTAATTA
1 A-TTTAATTA
6716932 ATAAAATATC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 1 0.04
18 14 0.58
19 2 0.08
20 7 0.29
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
ATTTAATTATATTTTTATT
Found at i:6723057 original size:25 final size:25
Alignment explanation
Indices: 6723029--6723081 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
6723019 TAGTATATGT
6723029 CAATGCAAAGACATGTATCTTCAGA
1 CAATGCAAAGACATGTATCTTCAGA
6723054 CAATGCAAAGACATGTATCTTCAGA
1 CAATGCAAAGACATGTATCTTCAGA
6723079 CAA
1 CAA
6723082 GTAACCAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.23
Consensus pattern (25 bp):
CAATGCAAAGACATGTATCTTCAGA
Found at i:6723324 original size:142 final size:141
Alignment explanation
Indices: 6723054--6723417 Score: 525
Period size: 142 Copynumber: 2.6 Consensus size: 141
6723044 TATCTTCAGA
* *
6723054 CAATGCAAAGACATGTATCTTCAGACAAGTAACCAAAAGAATCCTGGAGGGATCTCCACATATTC
1 CAATGCAAAGACATGTATCTTCAGACAAGTGACCAAAAGAATCCTGGAGGGATCTCCAGATATTC
* * * *
6723119 AAACTAAATTTTTAAAACAAGATTCCATTTTATTACCCTTCAATGACAAAAATAAATAAATTTAT
66 AAACTAAAATTTTAAAACAAGATTCCACTTTACTAACCTTCAATGACAAAAATAAATAAATTTAT
6723184 TT-AGTATATGT
131 TTCA-TATATGT
*
6723195 CAATGCAAAGACATGTATCTTCAGACAAGTGACCAAAAGAATCCTGAAGGGATCTCCAGATTATT
1 CAATGCAAAGACATGTATCTTCAGACAAGTGACCAAAAGAATCCTGGAGGGATCTCCAGA-TATT
* *
6723260 CAAACTAAAATTTTAAAACATGATTCCACTTTACTAACTTTCAATGACAAAAATAAATAAATTTA
65 CAAACTAAAATTTTAAAACAAGATTCCACTTTACTAACCTTCAATGACAAAAATAAATAAATTTA
6723325 TTTCATATATGT
130 TTTCATATATGT
** *** * *
6723337 CAATTTAAAGACATGTATCTTCAGAGGCGTGACCAAAA-AATTCCTGGAGGGATTTCCAGATAAT
1 CAATGCAAAGACATGTATCTTCAGACAAGTGACCAAAAGAA-TCCTGGAGGGATCTCCAGATATT
* *
6723401 CAAACTAGAACTTTAAA
65 CAAACTAAAATTTTAAA
6723418 CATACGATTC
Statistics
Matches: 201, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
141 77 0.38
142 123 0.61
143 1 0.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.29
Consensus pattern (141 bp):
CAATGCAAAGACATGTATCTTCAGACAAGTGACCAAAAGAATCCTGGAGGGATCTCCAGATATTC
AAACTAAAATTTTAAAACAAGATTCCACTTTACTAACCTTCAATGACAAAAATAAATAAATTTAT
TTCATATATGT
Found at i:6744017 original size:31 final size:31
Alignment explanation
Indices: 6743979--6744042 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
6743969 ATCCTGTATC
6743979 TGGTTAGCTAATCTTTCATGTGAATGTTGAT
1 TGGTTAGCTAATCTTTCATGTGAATGTTGAT
*
6744010 TGGTTAGCTAATCTTTTATGTGAATGTTGAT
1 TGGTTAGCTAATCTTTCATGTGAATGTTGAT
6744041 TG
1 TG
6744043 ACTAACTGAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.08, G:0.23, T:0.47
Consensus pattern (31 bp):
TGGTTAGCTAATCTTTCATGTGAATGTTGAT
Found at i:6747510 original size:24 final size:24
Alignment explanation
Indices: 6747476--6747522 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
6747466 TACTAATGAA
*
6747476 AATAAATAACTTATAAA-AATAAAT
1 AATAAAAAACTTA-AAATAATAAAT
6747500 AATAAAAAACTTAAAATAATAAA
1 AATAAAAAACTTAAAATAATAAA
6747523 AGAAAAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (24 bp):
AATAAAAAACTTAAAATAATAAAT
Found at i:6749470 original size:22 final size:22
Alignment explanation
Indices: 6749442--6749484 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
6749432 AAGCTATTAT
6749442 TTTTATTTTTCATTTT-TTTTAC
1 TTTTA-TTTTCATTTTATTTTAC
6749464 TTTTATTTTCATTTTATTTTA
1 TTTTATTTTCATTTTATTTTA
6749485 TTATTTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTATTTTCATTTTATTTTAC
Found at i:6749472 original size:11 final size:12
Alignment explanation
Indices: 6749442--6749484 Score: 56
Period size: 11 Copynumber: 3.8 Consensus size: 12
6749432 AAGCTATTAT
*
6749442 TTTTATTTTTCA
1 TTTTATTTTACA
6749454 TTTT-TTTTAC-
1 TTTTATTTTACA
6749464 TTTTATTTT-CA
1 TTTTATTTTACA
6749475 TTTTATTTTA
1 TTTTATTTTA
6749485 TTATTTATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
10 5 0.19
11 18 0.67
12 4 0.15
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTATTTTACA
Found at i:6750818 original size:21 final size:23
Alignment explanation
Indices: 6750773--6750823 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
6750763 AAAGCTAAAT
* *
6750773 AAATAACTAAAAAATATTAATGA
1 AAATAACTAAAAAATATGAAGGA
6750796 AAATAA-TAAAAAA-ATGAAGGA
1 AAATAACTAAAAAATATGAAGGA
6750817 AAA-AACT
1 AAATAACT
6750824 TTTTATCTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
20 2 0.08
21 10 0.40
22 7 0.28
23 6 0.24
ACGTcount: A:0.69, C:0.04, G:0.08, T:0.20
Consensus pattern (23 bp):
AAATAACTAAAAAATATGAAGGA
Found at i:6754883 original size:20 final size:20
Alignment explanation
Indices: 6754858--6754895 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6754848 ATTTATTTGG
*
6754858 CTTTTTAATTTTTTCTCTTT
1 CTTTTTAATTGTTTCTCTTT
*
6754878 CTTTTTTATTGTTTCTCT
1 CTTTTTAATTGTTTCTCT
6754896 CTTTACTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.08, C:0.16, G:0.03, T:0.74
Consensus pattern (20 bp):
CTTTTTAATTGTTTCTCTTT
Found at i:6759355 original size:144 final size:145
Alignment explanation
Indices: 6758978--6759374 Score: 491
Period size: 145 Copynumber: 2.7 Consensus size: 145
6758968 AAAATATATA
* * * *
6758978 AAATTACCAAAATACCCTTATAAAGGATATTTTCATAA-TTGACCTTTCCGAACTCAAATTTTTA
1 AAATTACCAAAATACCCCTATAAAGGATATTTTCATAATTTGATCTTTTCGAGCTCAAATTTTTA
* * * * *
6759042 TGAAAAATTTTTAGATCTTAATTTCATAAAATTTCATTACTTTTAGTGCATTTGAAATCATAGCG
66 TG-AAAATTTTTAGATCTTAATTTTATAATATTTCATGATTTTTAGTGCATTTGAAATCATAACG
* *
6759107 TACCCTAGGAAGTGTG
130 TACCCCAAGAAGTGTG
* ** * * *
6759123 AAATTATCAAAATACTTCTATAAAGGGTATTTTTATAATTTGATCTTCTCGAGCTCAAATTTTTA
1 AAATTACCAAAATACCCCTATAAAGGATATTTTCATAATTTGATCTTTTCGAGCTCAAATTTTTA
*
6759188 T-AAAATTTTTTAGATTTTAATTTTATAATATTTCATGATTTTTAGTGCATTTGAAATCATAACA
66 TGAAAA-TTTTTAGATCTTAATTTTATAATATTTCATGATTTTTAGTGCATTTGAAATCATAAC-
6759252 GTACCCCCAAGAA-TGCT-
129 GTA-CCCCAAGAAGTG-TG
* * *
6759269 AAATTACCAAAATACCCCCA-AAA-GATATTTTCATAATTTGATCTTTTCGTGCTCGAATTTTTA
1 AAATTACCAAAATACCCCTATAAAGGATATTTTCATAATTTGATCTTTTCGAGCTCAAATTTTTA
* * *
6759332 TGAAACTTTTCAGATCTCAATTTTATAATATTTCATGATTTTT
66 TGAAAATTTTTAGATCTTAATTTTATAATATTTCATGATTTTT
6759375 GATGGTTTAA
Statistics
Matches: 215, Mismatches: 31, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
144 74 0.34
145 89 0.41
146 44 0.20
147 8 0.04
ACGTcount: A:0.35, C:0.14, G:0.10, T:0.41
Consensus pattern (145 bp):
AAATTACCAAAATACCCCTATAAAGGATATTTTCATAATTTGATCTTTTCGAGCTCAAATTTTTA
TGAAAATTTTTAGATCTTAATTTTATAATATTTCATGATTTTTAGTGCATTTGAAATCATAACGT
ACCCCAAGAAGTGTG
Found at i:6760092 original size:24 final size:24
Alignment explanation
Indices: 6760052--6760116 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
6760042 CTACCAAAGG
* *
6760052 AAGAAAGAAGAGGAAGTT-GCCAAA
1 AAGAAAG-AGAGAAAGTTAGCAAAA
* *
6760076 AAGAATAGGGAGAAAGTTATCAAAA
1 AAGAA-AGAGAGAAAGTTAGCAAAA
6760101 AAGAAAGAGAGAAAGT
1 AAGAAAGAGAGAAAGT
6760117 AAGCCAAGGT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
24 23 0.68
25 11 0.32
ACGTcount: A:0.57, C:0.05, G:0.28, T:0.11
Consensus pattern (24 bp):
AAGAAAGAGAGAAAGTTAGCAAAA
Found at i:6762850 original size:16 final size:15
Alignment explanation
Indices: 6762816--6762867 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
6762806 AGAAATTGGA
**
6762816 AAAATAAAAAAAGTC
1 AAAATAAAAAAAAAC
*
6762831 AAAATAAAGAAAAAAG
1 AAAATAAA-AAAAAAC
*
6762847 AAAACAAAAAAAAAC
1 AAAATAAAAAAAAAC
6762862 AAAATA
1 AAAATA
6762868 CTTATAAAGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
15 19 0.63
16 11 0.37
ACGTcount: A:0.81, C:0.06, G:0.06, T:0.08
Consensus pattern (15 bp):
AAAATAAAAAAAAAC
Found at i:6764455 original size:15 final size:15
Alignment explanation
Indices: 6764435--6764467 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
6764425 AAATTTTTTG
6764435 TTTCATTAAT-ATATT
1 TTTCATT-ATCATATT
6764450 TTTCATTATCATATT
1 TTTCATTATCATATT
6764465 TTT
1 TTT
6764468 GAGCAATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 2 0.12
15 15 0.88
ACGTcount: A:0.27, C:0.09, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTCATTATCATATT
Found at i:6766411 original size:29 final size:29
Alignment explanation
Indices: 6766392--6766451 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
6766382 TTTTCCTTTG
6766392 TTTACTTTTTAAAATGATATCTTAAAATA
1 TTTACTTTTTAAAATGATATCTTAAAATA
6766421 TTTACTTTTTAAAATGATATCTTAAAATA
1 TTTACTTTTTAAAATGATATCTTAAAATA
6766450 TT
1 TT
6766452 GTAAAGTGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.40, C:0.07, G:0.03, T:0.50
Consensus pattern (29 bp):
TTTACTTTTTAAAATGATATCTTAAAATA
Found at i:6769224 original size:30 final size:30
Alignment explanation
Indices: 6769135--6769225 Score: 164
Period size: 30 Copynumber: 3.0 Consensus size: 30
6769125 ATATAGTGAA
*
6769135 TGCATGCATAGTAAAATGAAGAATAAATGA
1 TGCATGCATAGTAAAATGAAGAATAAATGG
*
6769165 TACATGCATAGTAAAATGAAGAATAAATGG
1 TGCATGCATAGTAAAATGAAGAATAAATGG
6769195 TGCATGCATAGTAAAATGAAGAATAAATGG
1 TGCATGCATAGTAAAATGAAGAATAAATGG
6769225 T
1 T
6769226 TATCTACTTT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 58 1.00
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.24
Consensus pattern (30 bp):
TGCATGCATAGTAAAATGAAGAATAAATGG
Found at i:6770435 original size:22 final size:22
Alignment explanation
Indices: 6770409--6770452 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
6770399 TGTATATTTA
* *
6770409 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAAAATTAAG
6770431 TATTTGTATCCCTAAAATTAAG
1 TATTTGTATCCCTAAAATTAAG
6770453 GACAAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAAAATTAAG
Found at i:6770624 original size:25 final size:26
Alignment explanation
Indices: 6770596--6770645 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
6770586 ATATACATTT
6770596 AGTGTTA-CTCTTAAG-TTTTTCACAC
1 AGTGTTATCTCTT-AGTTTTTTCACAC
*
6770621 AGTGTTATTTCTTAGTTTTTTCACA
1 AGTGTTATCTCTTAGTTTTTTCACA
6770646 TGGTATCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.22, C:0.16, G:0.12, T:0.50
Consensus pattern (26 bp):
AGTGTTATCTCTTAGTTTTTTCACAC
Found at i:6777608 original size:2 final size:2
Alignment explanation
Indices: 6777603--6777631 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
6777593 CATATATGTC
6777603 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
6777632 TTCAGCTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:6779279 original size:2 final size:2
Alignment explanation
Indices: 6779261--6779299 Score: 53
Period size: 2 Copynumber: 19.5 Consensus size: 2
6779251 GGCCATTGTT
*
6779261 TC TC TC T- TC ATC CC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC -TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
6779300 TGATTGAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 30 0.91
3 2 0.06
ACGTcount: A:0.03, C:0.49, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:6783466 original size:22 final size:22
Alignment explanation
Indices: 6783438--6783481 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
6783428 CTAAATCTTC
*
6783438 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
6783460 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
6783482 TAAATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:6783493 original size:22 final size:22
Alignment explanation
Indices: 6783441--6783493 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
6783431 AATCTTCCTT
* * *
6783441 AATTCTAGGGATACAAATACTT
1 AATTATAGAGATACAAATACTA
*
6783463 AATTCTAGAGATACAAATA-TA
1 AATTATAGAGATACAAATACTA
6783484 AATATATAGA
1 AAT-TATAGA
6783494 TTACAAGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 4 0.15
22 23 0.85
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.30
Consensus pattern (22 bp):
AATTATAGAGATACAAATACTA
Found at i:6787154 original size:25 final size:25
Alignment explanation
Indices: 6787120--6787168 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
6787110 TTTCTTTGAA
6787120 AGGATTCGACAATGAAGGCCTAAAC
1 AGGATTCGACAATGAAGGCCTAAAC
6787145 AGGATTCGACAATGAAGGCCTAAA
1 AGGATTCGACAATGAAGGCCTAAA
6787169 AAAGTCAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.16
Consensus pattern (25 bp):
AGGATTCGACAATGAAGGCCTAAAC
Found at i:6787362 original size:22 final size:22
Alignment explanation
Indices: 6787334--6787377 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
6787324 CTAAATTTTC
*
6787334 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
6787356 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
6787378 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:6793501 original size:27 final size:27
Alignment explanation
Indices: 6793463--6793519 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
6793453 GTTGGTAACC
* *
6793463 ATTCATGGACTCGATAGAATGATTCCT
1 ATTCATGGACTCGATAAAAGGATTCCT
6793490 ATTCATGGACTCGATAAAAGGATTCCT
1 ATTCATGGACTCGATAAAAGGATTCCT
6793517 ATT
1 ATT
6793520 TGGTTCAATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Consensus pattern (27 bp):
ATTCATGGACTCGATAAAAGGATTCCT
Found at i:6798174 original size:49 final size:48
Alignment explanation
Indices: 6798089--6798181 Score: 143
Period size: 49 Copynumber: 1.9 Consensus size: 48
6798079 AAATACATTA
*
6798089 AATGATCCTTTGAATTTTTTATAAATGGATTATTTAAGGCATTTCTAT
1 AATGATCCTTTGAATTTTTTATAAAAGGATTATTTAAGGCATTTCTAT
*
6798137 AATGATCCTTT-AATTTTTTTTGTAAAAGGATTATTTAAGGCATTT
1 AATGATCCTTTGAA--TTTTTTATAAAAGGATTATTTAAGGCATTT
6798182 TCTGTACAGA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
47 2 0.05
48 11 0.27
49 28 0.68
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.48
Consensus pattern (48 bp):
AATGATCCTTTGAATTTTTTATAAAAGGATTATTTAAGGCATTTCTAT
Found at i:6798249 original size:62 final size:64
Alignment explanation
Indices: 6798169--6798300 Score: 187
Period size: 63 Copynumber: 2.1 Consensus size: 64
6798159 TAAAAGGATT
* *
6798169 ATTTAAGGCATTTTCTGTACAGAAATGCCTTAAATAATCCTTTTAT-AAAAAAATTAAATGATC
1 ATTTAAGGCATTTTCTGTACAGAAACGCCATAAATAATCCTTTTATAAAAAAAATTAAATGATC
* * * **
6798232 ATTTAAGGTA-TTTCTGTACATACACGCCATAAATAATTTTTTTATAAAAAAAATTAAATGATC
1 ATTTAAGGCATTTTCTGTACAGAAACGCCATAAATAATCCTTTTATAAAAAAAATTAAATGATC
6798295 ATTTAA
1 ATTTAA
6798301 ACGATCCATA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 29 0.48
63 32 0.52
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.38
Consensus pattern (64 bp):
ATTTAAGGCATTTTCTGTACAGAAACGCCATAAATAATCCTTTTATAAAAAAAATTAAATGATC
Found at i:6798366 original size:165 final size:162
Alignment explanation
Indices: 6798189--6798566 Score: 434
Period size: 165 Copynumber: 2.3 Consensus size: 162
6798179 TTTTCTGTAC
* *
6798189 AGAAATGCCTTAAATAATCCTTTTATAAAAAAATTAAATGATCATTTAAGGTATTTCTGTACA-T
1 AGAAACGCCTTAAATAATCCTTTTATAAAAAAATTAAATGATCATTTAAGGTATTTCTGTACAGA
* * **
6798253 ACACGCCATAAATAATTTTTTTATAAAAAAAATTAAATGATCATTTAAACGATCCATAATATAAA
66 AAACACCATAAATAA-CCTTTTAT-AAAAAAATTAAATGATCATTTAAACGATCCATAATATAAA
6798318 ATAAAATAAAATGATCATTTAAGGTGATTCTATAT
129 A-AAAATAAAATGATCATTTAAGGTGATTCTATAT
* ****** * ** * *
6798353 AGAAAACGCCTTAAATAATTCTTTTATTTTTTTTATAAAAAAATTATTTAAGGTGTTTCTGTACA
1 AG-AAACGCCTTAAATAATCCTTTTA-TAAAAAAATTAAATGATCATTTAAGGTATTTCTGTACA
* * * * ** *
6798418 GAAAATATCTTAAATTACCTTTTATAAAAAAATTAAATGATTTTTTAAATGATCCATAATATAAA
64 GAAAACACCATAAATAACCTTTTATAAAAAAATTAAATGATCATTTAAACGATCCATAATATAAA
* * * *
6798483 AAAAATTAAATGATTATTTAAGGTGTTTTTATAT
129 AAAAATAAAATGATCATTTAAGGTGATTCTATAT
6798517 AGAAACGCCTTAAATAATCCTTTTATAAAAAAAATTAAATGATCATTTAA
1 AGAAACGCCTTAAATAATCCTTTTAT-AAAAAAATTAAATGATCATTTAA
6798567 ATAATCCATA
Statistics
Matches: 170, Mismatches: 40, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
162 1 0.01
163 35 0.21
164 33 0.19
165 59 0.35
166 33 0.19
167 9 0.05
ACGTcount: A:0.45, C:0.09, G:0.08, T:0.38
Consensus pattern (162 bp):
AGAAACGCCTTAAATAATCCTTTTATAAAAAAATTAAATGATCATTTAAGGTATTTCTGTACAGA
AAACACCATAAATAACCTTTTATAAAAAAATTAAATGATCATTTAAACGATCCATAATATAAAAA
AAATAAAATGATCATTTAAGGTGATTCTATAT
Found at i:6798506 original size:100 final size:100
Alignment explanation
Indices: 6798395--6798652 Score: 279
Period size: 101 Copynumber: 2.6 Consensus size: 100
6798385 TTATAAAAAA
* * * *
6798395 ATTATTTAAGGTGTTTCTGTACAGAAAATATCTTAAATTA-CCTTTTAT-AAAAAAATTAAATGA
1 ATTATTTAAGGTGTTTCTATACAG-AAACACCTTAAATAATCCTTTTATAAAAAAAATTAAATGA
** * * *
6798458 TTTTTTAAATGATCCATAATATAAAAAAAATTAAATG
65 TCATTTAAATAATCCATAATAT-AAAAAAATAAAAGG
* * *
6798495 ATTATTTAAGGTGTTTTTATATAGAAACGCCTTAAATAATCCTTTTATAAAAAAAATTAAATGAT
1 ATTATTTAAGGTGTTTCTATACAGAAACACCTTAAATAATCCTTTTATAAAAAAAATTAAATGAT
6798560 CATTTAAATAATCCATAATATAAAAAAATAAAAGG
66 CATTTAAATAATCCATAATATAAAAAAATAAAAGG
* * * * * * *
6798595 ATCATTTAAGGCATTTTTGTATATA-AAACACTTTAAATGATCTTTTTATATAAAAAAA
1 ATTATTTAAGG--TGTTTCTATACAGAAACACCTTAAATAATCCTTTTATA-AAAAAAA
6798653 GAAATTAAAG
Statistics
Matches: 134, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
99 11 0.08
100 51 0.38
101 55 0.41
102 17 0.13
ACGTcount: A:0.47, C:0.08, G:0.08, T:0.38
Consensus pattern (100 bp):
ATTATTTAAGGTGTTTCTATACAGAAACACCTTAAATAATCCTTTTATAAAAAAAATTAAATGAT
CATTTAAATAATCCATAATATAAAAAAATAAAAGG
Found at i:6798568 original size:37 final size:37
Alignment explanation
Indices: 6798526--6798603 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
6798516 TAGAAACGCC
** * *
6798526 TTAAATAATCC-TTTTATAAAAAAAATTAAATGATCAT
1 TTAAATAATCCATAATAT-AAAAAAATAAAAGGATCAT
6798563 TTAAATAATCCATAATATAAAAAAATAAAAGGATCAT
1 TTAAATAATCCATAATATAAAAAAATAAAAGGATCAT
6798600 TTAA
1 TTAA
6798604 GGCATTTTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
37 32 0.89
38 4 0.11
ACGTcount: A:0.55, C:0.08, G:0.04, T:0.33
Consensus pattern (37 bp):
TTAAATAATCCATAATATAAAAAAATAAAAGGATCAT
Found at i:6798582 original size:101 final size:100
Alignment explanation
Indices: 6798426--6798652 Score: 282
Period size: 101 Copynumber: 2.3 Consensus size: 100
6798416 CAGAAAATAT
* ** *
6798426 CTTAAATTA-CCTTTTAT-AAAAAAATTAAATGATTTTTTAAATGATCCATAATATAAAAAAAAT
1 CTTAAATAATCCTTTTATAAAAAAAATTAAATGATCATTTAAATAATCCATAATAT-AAAAAAAT
* * * *
6798489 TAAATGATTATTTAAGG-TGTTTT-TATATAGAAACGC
65 AAAAGGATCATTTAAGGAT-TTTTGTATATA-AAACAC
6798525 CTTAAATAATCCTTTTATAAAAAAAATTAAATGATCATTTAAATAATCCATAATATAAAAAAATA
1 CTTAAATAATCCTTTTATAAAAAAAATTAAATGATCATTTAAATAATCCATAATATAAAAAAATA
6798590 AAAGGATCATTTAAGGCATTTTTGTATATAAAACAC
66 AAAGGATCATTTAAGG-ATTTTTGTATATAAAACAC
* * *
6798626 TTTAAATGATCTTTTTATATAAAAAAA
1 CTTAAATAATCCTTTTATA-AAAAAAA
6798653 GAAATTAAAG
Statistics
Matches: 111, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
99 8 0.07
100 30 0.27
101 59 0.53
102 14 0.13
ACGTcount: A:0.48, C:0.08, G:0.07, T:0.37
Consensus pattern (100 bp):
CTTAAATAATCCTTTTATAAAAAAAATTAAATGATCATTTAAATAATCCATAATATAAAAAAATA
AAAGGATCATTTAAGGATTTTTGTATATAAAACAC
Found at i:6802624 original size:22 final size:24
Alignment explanation
Indices: 6802587--6802637 Score: 70
Period size: 22 Copynumber: 2.2 Consensus size: 24
6802577 AAAATTTGAG
6802587 ATTTTGAATTTTTAAAAATTAAAA
1 ATTTTGAATTTTTAAAAATTAAAA
* *
6802611 ATTTT-AA-TTTTAAAAATTCATA
1 ATTTTGAATTTTTAAAAATTAAAA
6802633 ATTTT
1 ATTTT
6802638 TTAAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 18 0.72
23 2 0.08
24 5 0.20
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (24 bp):
ATTTTGAATTTTTAAAAATTAAAA
Found at i:6803259 original size:17 final size:17
Alignment explanation
Indices: 6803233--6803265 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6803223 TTGACTTTGC
6803233 TTTTTCATTATTTTATT
1 TTTTTCATTATTTTATT
*
6803250 TTTTTGATTATTTTAT
1 TTTTTCATTATTTTAT
6803266 ACATAAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (17 bp):
TTTTTCATTATTTTATT
Found at i:6803323 original size:18 final size:18
Alignment explanation
Indices: 6803300--6803346 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
6803290 ATAATCTGTA
*
6803300 AATATTTAATAATAAAGT
1 AATATTTAATAATAAAAT
*
6803318 ATTATTTAAT-ATAAAAT
1 AATATTTAATAATAAAAT
6803335 AAT-TTTAATAAT
1 AATATTTAATAAT
6803347 TTCAATTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 6 0.24
17 10 0.40
18 9 0.36
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
AATATTTAATAATAAAAT
Found at i:6803556 original size:21 final size:22
Alignment explanation
Indices: 6803528--6803580 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
6803518 TTATTATTTT
6803528 TAAT-CTCATCATTACAATAAC
1 TAATACTCATCATTACAATAAC
*
6803549 TAA-ACTCATCATTATAATAAC
1 TAATACTCATCATTACAATAAC
6803570 TAATA-TCATCA
1 TAATACTCATCA
6803581 AAATCATCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 28 0.97
22 1 0.03
ACGTcount: A:0.45, C:0.21, G:0.00, T:0.34
Consensus pattern (22 bp):
TAATACTCATCATTACAATAAC
Found at i:6804997 original size:2 final size:2
Alignment explanation
Indices: 6804990--6805015 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
6804980 AATTTGCTTA
6804990 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
6805016 TTTACAAAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6813956 original size:19 final size:19
Alignment explanation
Indices: 6813934--6813976 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
6813924 TATAAAAATG
6813934 GAAAAAAAAAAAATAAGAA
1 GAAAAAAAAAAAATAAGAA
* *
6813953 GAAAAAGAAAAAATTAGAA
1 GAAAAAAAAAAAATAAGAA
6813972 -AAAAA
1 GAAAAA
6813977 TGTTGAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (19 bp):
GAAAAAAAAAAAATAAGAA
Found at i:6820496 original size:22 final size:22
Alignment explanation
Indices: 6820470--6820511 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
6820460 CTCATTTCTT
*
6820470 AAAATGTTAAATTTTGAGCTAA
1 AAAATGTTAAATTTTAAGCTAA
* *
6820492 AAAATTTTAATTTTTAAGCT
1 AAAATGTTAAATTTTAAGCT
6820512 TTGTATTCAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43
Consensus pattern (22 bp):
AAAATGTTAAATTTTAAGCTAA
Found at i:6821978 original size:6 final size:6
Alignment explanation
Indices: 6821960--6821992 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
6821950 AGACAGGAAG
*
6821960 AACAAA AAAAAA AAC-AA AACAAA AACAAA AACA
1 AACAAA AACAAA AACAAA AACAAA AACAAA AACA
6821993 GGGTATGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (6 bp):
AACAAA
Found at i:6821982 original size:17 final size:17
Alignment explanation
Indices: 6821960--6821992 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6821950 AGACAGGAAG
6821960 AACAAAAAAAAAAACAA
1 AACAAAAAAAAAAACAA
*
6821977 AACAAAAACAAAAACA
1 AACAAAAAAAAAAACA
6821993 GGGTATGATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (17 bp):
AACAAAAAAAAAAACAA
Found at i:6821991 original size:12 final size:12
Alignment explanation
Indices: 6821960--6821992 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
6821950 AGACAGGAAG
*
6821960 AACAAAAAAAAA
1 AACAAAAACAAA
6821972 AAC-AAAACAAA
1 AACAAAAACAAA
6821983 AACAAAAACA
1 AACAAAAACA
6821993 GGGTATGATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (12 bp):
AACAAAAACAAA
Found at i:6830344 original size:15 final size:15
Alignment explanation
Indices: 6830324--6830361 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
6830314 AAATTTTAAA
6830324 TCATATTATATATTT
1 TCATATTATATATTT
6830339 TCATA-T-TATATTT
1 TCATATTATATATTT
6830352 T-ATATTATAT
1 TCATATTATAT
6830362 TTAAAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 9 0.43
14 4 0.19
15 5 0.24
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (15 bp):
TCATATTATATATTT
Found at i:6830358 original size:12 final size:13
Alignment explanation
Indices: 6830332--6830363 Score: 57
Period size: 12 Copynumber: 2.5 Consensus size: 13
6830322 AATCATATTA
6830332 TATATTTTCATAT
1 TATATTTTCATAT
6830345 TATATTTT-ATAT
1 TATATTTTCATAT
6830357 TATATTT
1 TATATTT
6830364 AAAATTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (13 bp):
TATATTTTCATAT
Found at i:6833778 original size:13 final size:12
Alignment explanation
Indices: 6833760--6833789 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
6833750 TATTAAAGCT
6833760 TATATATTTAATA
1 TATATATTT-ATA
6833773 TATATATTTATA
1 TATATATTTATA
6833785 TATAT
1 TATAT
6833790 TTATTGAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.47
13 9 0.53
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
TATATATTTATA
Found at i:6838460 original size:18 final size:17
Alignment explanation
Indices: 6838428--6838463 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
6838418 AATTTTATAT
6838428 ATTTTTATATATATTTA
1 ATTTTTATATATATTTA
*
6838445 ATTTTATATTTATATTTA
1 ATTTT-TATATATATTTA
6838463 A
1 A
6838464 AATAATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTTTATATATATTTA
Found at i:6838477 original size:23 final size:21
Alignment explanation
Indices: 6838443--6838484 Score: 50
Period size: 21 Copynumber: 1.9 Consensus size: 21
6838433 TATATATATT
6838443 TAATTTTATATTTATATTTAAAA
1 TAATTTTATA-TTA-ATTTAAAA
6838466 TAATATTT-TATTAATTTAA
1 TAAT-TTTATATTAATTTAA
6838485 GATCGGGTCG
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
21 6 0.33
22 3 0.17
23 6 0.33
24 3 0.17
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TAATTTTATATTAATTTAAAA
Found at i:6839401 original size:82 final size:81
Alignment explanation
Indices: 6839274--6839428 Score: 181
Period size: 82 Copynumber: 1.9 Consensus size: 81
6839264 CCTCCTTTTG
* * * *
6839274 TTTCAACAAACCAAACCCCTGGCTCACATTTTCAATCTTCTTTTTAACATTTT-TCTTTTGACTT
1 TTTCAACAAACCAAACCCCTGACTCACATTTTCAACCTTCTTTTT-A-ATTTTCCCTTTTAACTT
6839338 TTCTAAGCCCCAACATTT
64 TTCTAAGCCCCAACATTT
* * *
6839356 TTTCAACAAA-TAAACCTCGTGACTCACCTTTTCAACCTT-TCTTTTAATTTTGCCCTTTTAACT
1 TTTCAACAAACCAAACC-CCTGACTCACATTTTCAACCTTCT-TTTTAATTTT-CCCTTTTAACT
6839419 TTTCTAAGCC
63 TTTCTAAGCC
6839429 TTATCCTCTT
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
80 5 0.08
81 7 0.11
82 50 0.81
ACGTcount: A:0.25, C:0.28, G:0.05, T:0.42
Consensus pattern (81 bp):
TTTCAACAAACCAAACCCCTGACTCACATTTTCAACCTTCTTTTTAATTTTCCCTTTTAACTTTT
CTAAGCCCCAACATTT
Found at i:6839441 original size:82 final size:80
Alignment explanation
Indices: 6839328--6839509 Score: 183
Period size: 82 Copynumber: 2.2 Consensus size: 80
6839318 TAACATTTTT
* * * * *
6839328 CTTTTGACTTTTCTAAGCCCCAACAT-TTTT-TCAACAAATAAA-CCTCGTGACTCACCTTTTCA
1 CTTTTAACTTTTCTAAGCCTCAACATCTTTTCTCAACAAACAAATCCT-ATAACTCACCTTTT-A
*
6839390 ACCTTTCTTTTAATTTTGCC
64 ACCTTTC-TTT-A-CTTGCC
* * * * *
6839410 CTTTTAACTTTTCTAAGCCTTATCCTCTTTTCTCAATAAACAAATCCTATAACTTACCTTTTAAC
1 CTTTTAACTTTTCTAAGCCTCAACATCTTTTCTCAACAAACAAATCCTATAACTCACCTTTTAAC
6839475 CTTTCTTTACTTGCC
66 CTTTCTTTACTTGCC
6839490 CTTTTTAAC-TTTCTAAGCCT
1 C-TTTTAACTTTTCTAAGCCT
6839510 AATCTTTTTT
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
80 17 0.20
81 8 0.09
82 24 0.28
83 12 0.14
84 21 0.25
85 3 0.04
ACGTcount: A:0.24, C:0.27, G:0.04, T:0.44
Consensus pattern (80 bp):
CTTTTAACTTTTCTAAGCCTCAACATCTTTTCTCAACAAACAAATCCTATAACTCACCTTTTAAC
CTTTCTTTACTTGCC
Found at i:6841809 original size:18 final size:20
Alignment explanation
Indices: 6841786--6841823 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
6841776 TTAAGAATTA
6841786 AAAAAACT-AAAA-ATTTTT
1 AAAAAACTCAAAATATTTTT
*
6841804 AAAAAATTCAAAATATTTTT
1 AAAAAACTCAAAATATTTTT
6841824 TATATTAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 4 0.24
20 6 0.35
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAAACTCAAAATATTTTT
Found at i:6855117 original size:3 final size:3
Alignment explanation
Indices: 6855109--6855146 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
6855099 ATTTATTTAT
6855109 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6855147 CAAATAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:6876788 original size:2 final size:2
Alignment explanation
Indices: 6876781--6876915 Score: 73
Period size: 2 Copynumber: 67.5 Consensus size: 2
6876771 AAATCTTAAT
*
6876781 TA TA TA TA TA TA TA TA TA AA TCA -A CT- TA TA CTA -A TA TCA TA
1 TA TA TA TA TA TA TA TA TA TA T-A TA -TA TA TA -TA TA TA T-A TA
* * * * * * *
6876822 TA TT TA TC TA TC TA TT TA T- TA TT TA TT TA TA TA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
6876863 TA AA TA TA TA -A GTG GA TG TG TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
6876905 TA TA TA TA TA T
1 TA TA TA TA TA T
6876916 TTGAAAAGCG
Statistics
Matches: 99, Mismatches: 24, Indels: 20
0.69 0.17 0.14
Matches are distributed among these distances:
1 5 0.05
2 89 0.90
3 5 0.05
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (2 bp):
TA
Found at i:6879505 original size:16 final size:16
Alignment explanation
Indices: 6879484--6879514 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6879474 GACTATGCAT
*
6879484 TCTTTTCTTGAAGACC
1 TCTTTTCTCGAAGACC
6879500 TCTTTTCTCGAAGAC
1 TCTTTTCTCGAAGAC
6879515 TCGTACATGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.26, G:0.13, T:0.42
Consensus pattern (16 bp):
TCTTTTCTCGAAGACC
Found at i:6879702 original size:77 final size:77
Alignment explanation
Indices: 6879575--6879728 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
6879565 ATATTGACTA
6879575 ATCATCTTCACTAATGTACCATGGAAATACTTTCCTTTTAAGAGTAATAGTGAGCCATACCAAAA
1 ATCATCTTCACTAATGTACCATGGAAATACTTTCCTTTTAAGAGTAATAGTGAGCCATACCAAAA
6879640 GACAAAAACTCT
66 GACAAAAACTCT
6879652 ATCATCTTCACTAATGTACCATGGAAATACTTTCCTTTTAAGAGTAATAGTGAGCCATACCAAAA
1 ATCATCTTCACTAATGTACCATGGAAATACTTTCCTTTTAAGAGTAATAGTGAGCCATACCAAAA
6879717 GACAAAAACTCT
66 GACAAAAACTCT
6879729 TGTCCATATT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.29
Consensus pattern (77 bp):
ATCATCTTCACTAATGTACCATGGAAATACTTTCCTTTTAAGAGTAATAGTGAGCCATACCAAAA
GACAAAAACTCT
Found at i:6894193 original size:16 final size:17
Alignment explanation
Indices: 6894172--6894207 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
6894162 TTTTGCTTCC
6894172 TTAC-TTTACTGGTCCA
1 TTACTTTTACTGGTCCA
*
6894188 TTACTTTTACTTGTCCA
1 TTACTTTTACTGGTCCA
6894205 TTA
1 TTA
6894208 GCTTCTGCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.19, C:0.22, G:0.08, T:0.50
Consensus pattern (17 bp):
TTACTTTTACTGGTCCA
Found at i:6898319 original size:15 final size:16
Alignment explanation
Indices: 6898291--6898333 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
6898281 TAATTTTATG
6898291 AATAAAA-TTA-ATTA
1 AATAAAATTTATATTA
*
6898305 AA-ATAATTTATATTA
1 AATAAAATTTATATTA
6898320 AATAAAATTTATAT
1 AATAAAATTTATAT
6898334 AATTTATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 3 0.12
14 5 0.21
15 6 0.25
16 10 0.42
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATAAAATTTATATTA
Found at i:6899901 original size:19 final size:19
Alignment explanation
Indices: 6899877--6899932 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 19
6899867 TTTGTATGAG
6899877 TTAATTTTAATTTATTAAT
1 TTAATTTTAATTTATTAAT
6899896 TTAATTTTTTAATAATATATTAAT
1 TTAA--TTTTAAT--T-TATTAAT
6899920 TTAATTTTAATTT
1 TTAATTTTAATTT
6899933 TAAATTTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
19 5 0.16
20 1 0.03
21 7 0.22
22 7 0.22
23 1 0.03
24 11 0.34
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTAATTTTAATTTATTAAT
Found at i:6902497 original size:10 final size:10
Alignment explanation
Indices: 6902482--6902730 Score: 103
Period size: 10 Copynumber: 25.6 Consensus size: 10
6902472 TATAAAAAGC
6902482 AAATTTTAAA
1 AAATTTTAAA
6902492 AAA-TTT--A
1 AAATTTTAAA
6902499 AAATTTTCCAAA
1 AAATTTT--AAA
6902511 AAATTTCTAAA
1 AAATTT-TAAA
*
6902522 AATTTTTAAA
1 AAATTTTAAA
** *
6902532 ATTTTTTTAA
1 AAATTTTAAA
*
6902542 AAATTCTAAA
1 AAATTTTAAA
* *
6902552 AGATTCTAAA
1 AAATTTTAAA
* *
6902562 AACTTCTAAA
1 AAATTTTAAA
6902572 AGAACTTTTAAA
1 A-AA-TTTTAAA
* *
6902584 AGATTATAAA
1 AAATTTTAAA
*
6902594 AAA-TTCAAA
1 AAATTTTAAA
*
6902603 ACAA-TTCAAA
1 A-AATTTTAAA
*
6902613 AAATTTTAAT
1 AAATTTTAAA
*
6902623 AAATTTAAAA
1 AAATTTTAAA
6902633 AAATTTT--A
1 AAATTTTAAA
6902641 AAATTTTATAA
1 AAATTTTA-AA
* *
6902652 ATATTTT-TA
1 AAATTTTAAA
*
6902661 AAA-GTTAAA
1 AAATTTTAAA
* *
6902670 AAA-TATGAA
1 AAATTTTAAA
* **
6902679 ATATTTTTTA
1 AAATTTTAAA
*
6902689 AAATTAT-AA
1 AAATTTTAAA
6902698 AAATTTT--A
1 AAATTTTAAA
*
6902706 AAATTCT-AA
1 AAATTTTAAA
*
6902715 AAATTCTAAA
1 AAATTTTAAA
6902725 AAATTT
1 AAATTT
6902731 AATAAAAGTG
Statistics
Matches: 182, Mismatches: 40, Indels: 34
0.71 0.16 0.13
Matches are distributed among these distances:
7 4 0.02
8 20 0.11
9 37 0.20
10 89 0.49
11 17 0.09
12 14 0.08
13 1 0.01
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (10 bp):
AAATTTTAAA
Found at i:6902500 original size:9 final size:9
Alignment explanation
Indices: 6902486--6902844 Score: 72
Period size: 10 Copynumber: 37.8 Consensus size: 9
6902476 AAAAGCAAAT
6902486 TTTAAAAAA
1 TTTAAAAAA
*
6902495 TTT-AAAAT
1 TTTAAAAAA
6902503 TTTCCAAAAAA
1 TTT--AAAAAA
*
6902514 TTTCTAAAAATT
1 -TT-TAAAAA-A
**
6902526 TTTAAAATTT
1 TTTAAAA-AA
*
6902536 TTTTAAAAA
1 TTTAAAAAA
*
6902545 TTCTAAAAGA
1 TT-TAAAAAA
*
6902555 TTCTAAAAAC
1 TT-TAAAAAA
6902565 TTCTAAAAGAA
1 TT-TAAAA-AA
*
6902576 CTTTTAAAAGA
1 --TTTAAAAAA
6902587 TTATAAAAAA
1 TT-TAAAAAA
*
6902597 TTCAAAACAA
1 TTTAAAA-AA
*
6902607 TTCAAAAAA
1 TTTAAAAAA
*
6902616 TTTTAATAAA
1 -TTTAAAAAA
6902626 TTTAAAAAAA
1 TTT-AAAAAA
* *
6902636 TTTTAAAAT
1 TTTAAAAAA
*
6902645 TTTATAAATA
1 TTTA-AAAAA
**
6902655 TTTTTAAAA
1 TTTAAAAAA
*
6902664 GTTAAAAAA
1 TTTAAAAAA
* * *
6902673 TATGAAATAT
1 T-TTAAAAAA
**
6902683 TTTTTAAAA
1 TTTAAAAAA
6902692 -TTATAAAAA
1 TTTA-AAAAA
*
6902701 TTT-TAAAA
1 TTTAAAAAA
6902709 TTCT-AAAAA
1 TT-TAAAAAA
6902718 TTCTAAAAAA
1 TT-TAAAAAA
6902728 TTTAATAAAA
1 TTTAA-AAAA
*
6902738 GTGCTAAAAATTA
1 -T-TTAAAAA--A
6902751 TTTTAATAAAA
1 -TTTAA-AAAA
* * **
6902762 ATT-ATATT
1 TTTAAAAAA
*
6902770 TTCTAAAAAT
1 TT-TAAAAAA
6902780 TTTAAAAAA
1 TTTAAAAAA
6902789 --TAAAAAA
1 TTTAAAAAA
*
6902796 CTTAAAAAA
1 TTTAAAAAA
*
6902805 -TT-GAAAA
1 TTTAAAAAA
*
6902812 TTAAAAAAA
1 TTTAAAAAA
* *
6902821 TCT-AAAAT
1 TTTAAAAAA
*
6902829 TTTTAAAAA
1 TTTAAAAAA
6902838 TTTAAAA
1 TTTAAAA
6902845 TATATATATA
Statistics
Matches: 254, Mismatches: 62, Indels: 68
0.66 0.16 0.18
Matches are distributed among these distances:
7 11 0.04
8 26 0.10
9 81 0.32
10 97 0.38
11 18 0.07
12 13 0.05
13 8 0.03
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (9 bp):
TTTAAAAAA
Found at i:6902562 original size:30 final size:28
Alignment explanation
Indices: 6902490--6902562 Score: 74
Period size: 31 Copynumber: 2.4 Consensus size: 28
6902480 GCAAATTTTA
6902490 AAAAATTTAAAATTTTCCAAAAAATTTCT
1 AAAAATTTAAAATTTTCCAAAAAA-TTCT
***
6902519 AAAAATTTTTAAAATTTTTTTAAAAATTCT
1 AAAAA--TTTAAAATTTTCCAAAAAATTCT
6902549 AAAAGATTCTAAAA
1 AAAA-ATT-TAAAA
6902563 ACTTCTAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
29 7 0.19
30 13 0.35
31 17 0.46
ACGTcount: A:0.52, C:0.07, G:0.01, T:0.40
Consensus pattern (28 bp):
AAAAATTTAAAATTTTCCAAAAAATTCT
Found at i:6902563 original size:19 final size:19
Alignment explanation
Indices: 6902482--6902729 Score: 98
Period size: 19 Copynumber: 12.8 Consensus size: 19
6902472 TATAAAAAGC
*
6902482 AAATTTTAAAAAATT-TAA
1 AAATTCTAAAAAATTCTAA
* *
6902500 AATTTTCCAAAAAATTTCTAA
1 AA-ATTCTAAAAAA-TTCTAA
* ** *
6902521 AAATTTTTAAAATTTTTTTAA
1 AAA-TTCTAAAA-AATTCTAA
*
6902542 AAATTCTAAAAGATTCTAA
1 AAATTCTAAAAAATTCTAA
*
6902561 AAACTTCTAAAAGAACTTTTAA
1 AAA-TTCTAAAA-AA-TTCTAA
* *
6902583 AAGATTATAAAAAATTCAAA
1 AA-ATTCTAAAAAATTCTAA
*
6902603 ACAATTC-AAAAAATTTTAA
1 A-AATTCTAAAAAATTCTAA
*
6902622 TAAATT-TAAAAAAATT-TTA
1 -AAATTCT-AAAAAATTCTAA
* * * *
6902641 AAATTTTATAAATATTTTTA
1 AAATTCTA-AAAAATTCTAA
* *
6902661 AAAGT-TAAAAAATAT-GAA
1 AAATTCTAAAAAAT-TCTAA
* * ** *
6902679 ATATTTTTTAAAATTATAA
1 AAATTCTAAAAAATTCTAA
*
6902698 AAATT-T-TAAAATTCTAA
1 AAATTCTAAAAAATTCTAA
6902715 AAATTCTAAAAAATT
1 AAATTCTAAAAAATT
6902730 TAATAAAAGT
Statistics
Matches: 174, Mismatches: 35, Indels: 41
0.70 0.14 0.16
Matches are distributed among these distances:
17 15 0.09
18 20 0.11
19 60 0.34
20 41 0.24
21 23 0.13
22 14 0.08
23 1 0.01
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (19 bp):
AAATTCTAAAAAATTCTAA
Found at i:6902663 original size:28 final size:29
Alignment explanation
Indices: 6902632--6902709 Score: 74
Period size: 28 Copynumber: 2.8 Consensus size: 29
6902622 TAAATTTAAA
6902632 AAAATTTTAAAATTTTATAAATA-TTTTT
1 AAAATTTTAAAATTTTATAAATATTTTTT
* **
6902660 AAAA-GTTAAAA-AATATGAAATATTTTTT
1 AAAATTTTAAAATTTTAT-AAATATTTTTT
*
6902688 AAAATTATAAAAATTTTA-AAAT
1 AAAATT-TTAAAATTTTATAAAT
6902710 TCTAAAAATT
Statistics
Matches: 38, Mismatches: 7, Indels: 9
0.70 0.13 0.17
Matches are distributed among these distances:
26 3 0.08
27 11 0.29
28 13 0.34
29 4 0.11
30 5 0.13
31 2 0.05
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (29 bp):
AAAATTTTAAAATTTTATAAATATTTTTT
Found at i:6902668 original size:27 final size:28
Alignment explanation
Indices: 6902638--6902709 Score: 69
Period size: 27 Copynumber: 2.6 Consensus size: 28
6902628 TAAAAAAATT
6902638 TTAAAATTTTATAAATA-TTTTTAAAAG
1 TTAAAATTTTATAAATATTTTTTAAAAG
** *
6902665 TTAAAA-AATATGAAATATTTTTTAAAAT
1 TTAAAATTTTAT-AAATATTTTTTAAAAG
6902693 TATAAAAATTTTA-AAAT
1 T-T-AAAATTTTATAAAT
6902710 TCTAAAAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
26 3 0.09
27 11 0.31
28 10 0.29
29 5 0.14
30 4 0.11
31 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (28 bp):
TTAAAATTTTATAAATATTTTTTAAAAG
Found at i:6902706 original size:17 final size:17
Alignment explanation
Indices: 6902684--6902725 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
6902674 ATGAAATATT
6902684 TTTTAAAATTATAAAAA
1 TTTTAAAATTATAAAAA
*
6902701 TTTTAAAATTCTAAAAA
1 TTTTAAAATTATAAAAA
*
6902718 TTCTAAAA
1 TTTTAAAA
6902726 AATTTAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (17 bp):
TTTTAAAATTATAAAAA
Found at i:6902771 original size:17 final size:16
Alignment explanation
Indices: 6902742--6902780 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
6902732 ATAAAAGTGC
*
6902742 TAAAAATTAT-TTTAA
1 TAAAAATTATATTTTA
*
6902757 TAAAAATTATATTTTC
1 TAAAAATTATATTTTA
6902773 TAAAAATT
1 TAAAAATT
6902781 TTAAAAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (16 bp):
TAAAAATTATATTTTA
Found at i:6902792 original size:16 final size:16
Alignment explanation
Indices: 6902773--6902838 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 16
6902763 TTATATTTTC
6902773 TAAAAATTTTAAAAAA
1 TAAAAATTTTAAAAAA
**
6902789 TAAAAAACTTAAAAAA
1 TAAAAATTTTAAAAAA
* *
6902805 TTGAAAA-TTAAAAAAA
1 -TAAAAATTTTAAAAAA
* *
6902821 TCTAAAATTTTTAAAAA
1 T-AAAAATTTTAAAAAA
6902838 T
1 T
6902839 TTAAAATATA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
15 1 0.03
16 25 0.64
17 13 0.33
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (16 bp):
TAAAAATTTTAAAAAA
Found at i:6902891 original size:18 final size:19
Alignment explanation
Indices: 6902870--6902905 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
6902860 TTTTTGAAAA
6902870 AATATGA-AATTTTTTTAG
1 AATATGATAATTTTTTTAG
*
6902888 AATATTATAATTTTTTTA
1 AATATGATAATTTTTTTA
6902906 TAAAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (19 bp):
AATATGATAATTTTTTTAG
Found at i:6902980 original size:25 final size:24
Alignment explanation
Indices: 6902949--6902997 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
6902939 CTGAAACTTT
* *
6902949 CTAAAAAATTAACAAAAATTTGAAA
1 CTAAAAAAATAA-AAAAATTGGAAA
6902974 CTAAAAAAATAAAAAAATTGGAAA
1 CTAAAAAAATAAAAAAATTGGAAA
6902998 ATTTTAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.20
Consensus pattern (24 bp):
CTAAAAAAATAAAAAAATTGGAAA
Found at i:6903109 original size:22 final size:22
Alignment explanation
Indices: 6903082--6903165 Score: 63
Period size: 20 Copynumber: 4.0 Consensus size: 22
6903072 ATTAAAAAAA
6903082 TGAAAAA-ATTTTAGAATTTTTT
1 TGAAAAAGATTTTAGAA-TTTTT
** *
6903104 TGAAAAATCTTTTACAATTTTT
1 TGAAAAAGATTTTAGAATTTTT
* *
6903126 T-AAAAA-TTTTTA-TATTTTT
1 TGAAAAAGATTTTAGAATTTTT
*
6903145 TCAAAAAGA-TTTAG-ATTTTT
1 TGAAAAAGATTTTAGAATTTTT
6903165 T
1 T
6903166 ATTTTAAATA
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
19 7 0.13
20 21 0.40
21 5 0.09
22 13 0.25
23 7 0.13
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (22 bp):
TGAAAAAGATTTTAGAATTTTT
Found at i:6903144 original size:20 final size:20
Alignment explanation
Indices: 6903097--6903165 Score: 66
Period size: 20 Copynumber: 3.4 Consensus size: 20
6903087 AAATTTTAGA
6903097 ATTTTTTTGAAAAATCTTTTAC
1 ATTTTTTT-AAAAAT-TTTTAC
* *
6903119 AATTTTTTAAAAATTTTTAT
1 ATTTTTTTAAAAATTTTTAC
* ** *
6903139 ATTTTTTCAAAAAGATTTAG
1 ATTTTTTTAAAAATTTTTAC
6903159 ATTTTTT
1 ATTTTTT
6903166 ATTTTAAATA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 27 0.68
21 6 0.15
22 7 0.17
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (20 bp):
ATTTTTTTAAAAATTTTTAC
Found at i:6903151 original size:21 final size:21
Alignment explanation
Indices: 6903084--6903156 Score: 62
Period size: 21 Copynumber: 3.4 Consensus size: 21
6903074 TAAAAAAATG
*
6903084 AAAAAA-TTTTAGAATTTTTTT
1 AAAAAATTTTTACAA-TTTTTT
*
6903105 GAAAAATCTTTTACAATTTTTT
1 AAAAAAT-TTTTACAATTTTTT
*
6903127 -AAAAATTTTTA-TATTTTTT
1 AAAAAATTTTTACAATTTTTT
6903146 CAAAAAGATTT
1 -AAAAA-ATTT
6903157 AGATTTTTTA
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
19 7 0.16
20 5 0.11
21 15 0.34
22 10 0.23
23 7 0.16
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (21 bp):
AAAAAATTTTTACAATTTTTT
Found at i:6904101 original size:14 final size:14
Alignment explanation
Indices: 6904078--6904108 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
6904068 TATGCTTTTG
6904078 TTTTTCCTTTTTCT
1 TTTTTCCTTTTTCT
*
6904092 TTTTTTCTTTTTCT
1 TTTTTCCTTTTTCT
6904106 TTT
1 TTT
6904109 AACCATTCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (14 bp):
TTTTTCCTTTTTCT
Found at i:6912873 original size:14 final size:13
Alignment explanation
Indices: 6912850--6912888 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 13
6912840 GCCTAAATAA
6912850 AAAATATATAATT
1 AAAATATATAATT
6912863 AAAATATTATAATTAT
1 AAAATA-TATAA-T-T
6912879 AAAATATATA
1 AAAATATATA
6912889 TGTGAATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 6 0.26
14 5 0.22
15 5 0.22
16 7 0.30
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAATATATAATT
Found at i:6915751 original size:15 final size:16
Alignment explanation
Indices: 6915731--6915761 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
6915721 TTTTTATATA
6915731 CAAATTTAA-AATTAT
1 CAAATTTAATAATTAT
6915746 CAAATTTAATAATTAT
1 CAAATTTAATAATTAT
6915762 TAACAGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (16 bp):
CAAATTTAATAATTAT
Found at i:6921476 original size:24 final size:23
Alignment explanation
Indices: 6921416--6921478 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 23
6921406 TATAGAAATT
6921416 TAAAGATCTGATAAAAAAAGAAAGC
1 TAAA-ATCTGA-AAAAAAAGAAAGC
* * * *
6921441 AAAAAACGGAAAAACAAAGAAAGG
1 TAAAATCTGAAAAA-AAAGAAAGC
6921465 TAAAATCTGAAAAA
1 TAAAATCTGAAAAA
6921479 GAGAAAAAGT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
23 4 0.13
24 23 0.77
25 3 0.10
ACGTcount: A:0.65, C:0.08, G:0.16, T:0.11
Consensus pattern (23 bp):
TAAAATCTGAAAAAAAAGAAAGC
Found at i:6921942 original size:13 final size:14
Alignment explanation
Indices: 6921912--6921949 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
6921902 TCCAGTTTCA
*
6921912 TTTTTATCTTTA-G
1 TTTTTATTTTTATG
*
6921925 TTTTTATTTTTATT
1 TTTTTATTTTTATG
6921939 TTTTTATTTTT
1 TTTTTATTTTT
6921950 TTCAGAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 11 0.50
14 11 0.50
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (14 bp):
TTTTTATTTTTATG
Found at i:6923981 original size:22 final size:23
Alignment explanation
Indices: 6923933--6923982 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
6923923 TTAGAGTGTT
*
6923933 GGTTTGAGTTTTAAGGGTTTGAG
1 GGTTTGAGTTTTAAGGGTTTGAA
6923956 GGTTTG-GTTTTAA-GGTTTAGAA
1 GGTTTGAGTTTTAAGGGTTT-GAA
6923978 GGTTT
1 GGTTT
6923983 AGGGTTTCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 5 0.20
22 14 0.56
23 6 0.24
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.46
Consensus pattern (23 bp):
GGTTTGAGTTTTAAGGGTTTGAA
Found at i:6924011 original size:14 final size:14
Alignment explanation
Indices: 6923994--6924043 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
6923984 GGGTTTCGAT
6923994 TTTAGGATTTGAGG
1 TTTAGGATTTGAGG
* *
6924008 TTTAGGATTTTAGT
1 TTTAGGATTTGAGG
*
6924022 TTTAGGGTTTAGAGG
1 TTTAGGATTT-GAGG
6924037 ATTTAGG
1 -TTTAGG
6924044 CTTTTAGTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
14 21 0.72
15 2 0.07
16 6 0.21
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (14 bp):
TTTAGGATTTGAGG
Found at i:6924030 original size:21 final size:22
Alignment explanation
Indices: 6923980--6924033 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 22
6923970 GTTTAGAAGG
*
6923980 TTTAGGGTTT-CGATTTTAGGA
1 TTTAGGGTTTAGGATTTTAGGA
*
6924001 TTT-GAGGTTTAGGATTTTA-GT
1 TTTAG-GGTTTAGGATTTTAGGA
6924022 TTTAGGGTTTAG
1 TTTAGGGTTTAG
6924034 AGGATTTAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 1 0.04
21 19 0.68
22 8 0.29
ACGTcount: A:0.19, C:0.02, G:0.30, T:0.50
Consensus pattern (22 bp):
TTTAGGGTTTAGGATTTTAGGA
Found at i:6924062 original size:52 final size:54
Alignment explanation
Indices: 6924006--6924142 Score: 147
Period size: 52 Copynumber: 2.5 Consensus size: 54
6923996 TAGGATTTGA
*
6924006 GGTTTAGGATTTTAGTTTTAGGGTTTAGAGGATTTAGGCTTTTAGTTTT-G-GG
1 GGTTTAGGATTTTAGTTTAAGGGTTTAGAGGATTTAGGCTTTTAGTTTTGGTGG
* * *
6924058 GGTTTAAGG-TTTTAGATTTCA-GGTTTGGAGGATTTAGGGTTTTAGTTTTAGGGTTTGG
1 GGTTT-AGGATTTTAG-TTTAAGGGTTTAGAGGATTTAGGCTTTTAGTTTT--GG--TGG
*
6924116 GGTTTAAGATTTTAGTTTAAGGGTTTA
1 GGTTTAGGATTTTAGTTTAAGGGTTTA
6924143 AAGTCACGAT
Statistics
Matches: 69, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
52 37 0.54
53 7 0.10
55 1 0.01
57 6 0.09
58 18 0.26
ACGTcount: A:0.19, C:0.01, G:0.32, T:0.47
Consensus pattern (54 bp):
GGTTTAGGATTTTAGTTTAAGGGTTTAGAGGATTTAGGCTTTTAGTTTTGGTGG
Found at i:6924109 original size:14 final size:14
Alignment explanation
Indices: 6924090--6924141 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
6924080 GTTTGGAGGA
6924090 TTTAGGGTTTTAGT
1 TTTAGGGTTTTAGT
** *
6924104 TTTAGGGTTTGGGG
1 TTTAGGGTTTTAGT
* *
6924118 TTTAAGATTTTAGT
1 TTTAGGGTTTTAGT
*
6924132 TTAAGGGTTT
1 TTTAGGGTTT
6924142 AAAGTCACGA
Statistics
Matches: 27, Mismatches: 11, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.17, C:0.00, G:0.31, T:0.52
Consensus pattern (14 bp):
TTTAGGGTTTTAGT
Found at i:6924264 original size:29 final size:28
Alignment explanation
Indices: 6924196--6924267 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 28
6924186 GGGGTTTTAA
*
6924196 GGATTTTGTGTTTAGAAATTTAAGGTTT
1 GGATTTTGGGTTTAGAAATTTAAGGTTT
** * * *
6924224 CAATGTTAGGGTTTTGAAATTTAGGGTTT
1 GGAT-TTTGGGTTTAGAAATTTAAGGTTT
6924253 GGATTTTCGGGTTTA
1 GGATTTT-GGGTTTA
6924268 AAAAAAACGT
Statistics
Matches: 32, Mismatches: 10, Indels: 3
0.71 0.22 0.07
Matches are distributed among these distances:
28 4 0.12
29 28 0.88
ACGTcount: A:0.22, C:0.03, G:0.28, T:0.47
Consensus pattern (28 bp):
GGATTTTGGGTTTAGAAATTTAAGGTTT
Found at i:6924395 original size:3 final size:3
Alignment explanation
Indices: 6924387--6924461 Score: 57
Period size: 3 Copynumber: 25.3 Consensus size: 3
6924377 TTATGAAAAT
* * * *
6924387 TTA TTA TTA TTA TTA AT- TTA TTA TTA TTA ATA ATA TTA TTA TTA GTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA
* *
6924435 TT- TTC TTA TTG TT- TTA TTA TTTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA T
6924462 ATTTTTAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
2 5 0.08
3 49 0.83
4 5 0.08
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:6924404 original size:17 final size:17
Alignment explanation
Indices: 6924384--6924435 Score: 77
Period size: 17 Copynumber: 3.0 Consensus size: 17
6924374 TTTTTATGAA
*
6924384 AATTTATTATTATTATT
1 AATTTATTATTATTAAT
6924401 AATTTATTATTATTAAT
1 AATTTATTATTATTAAT
*
6924418 AATATTATTATTAGTAAT
1 AAT-TTATTATTATTAAT
6924436 TTTCTTATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 19 0.59
18 13 0.41
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (17 bp):
AATTTATTATTATTAAT
Found at i:6924444 original size:15 final size:15
Alignment explanation
Indices: 6924391--6924435 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
6924381 GAAAATTTAT
*
6924391 TATTATTATTAAT-T
1 TATTATTATTAATAA
6924405 TATTATTATTAATAA
1 TATTATTATTAATAA
*
6924420 TATTATTATTAGTAA
1 TATTATTATTAATAA
6924435 T
1 T
6924436 TTTCTTATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
14 13 0.46
15 15 0.54
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (15 bp):
TATTATTATTAATAA
Found at i:6924764 original size:21 final size:20
Alignment explanation
Indices: 6924740--6924783 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 20
6924730 AATAAAATTT
6924740 AAAATAACAAAAATAATATAAA
1 AAAATAA-AAAAATAATA-AAA
6924762 AAAATAAAAAAATAATAAAA
1 AAAATAAAAAAATAATAAAA
6924782 AA
1 AA
6924784 TTACTGCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 5 0.23
21 10 0.45
22 7 0.32
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (20 bp):
AAAATAAAAAAATAATAAAA
Found at i:6933097 original size:59 final size:58
Alignment explanation
Indices: 6932964--6933099 Score: 148
Period size: 59 Copynumber: 2.3 Consensus size: 58
6932954 TTTCAATTTT
** *
6932964 TTATTGAAGACGTTTTTGGGCAAAACCAACTTGAATAATCCCAAAAAAAATGAAAAAAA
1 TTATTGAAGACGTTTTTGACCAAAAACAACTTGAATAATCCCAAAAAAAA-GAAAAAAA
* ** * ** *
6933023 TTATTAAAGGTGTTTTTGACCAAAAACACCTTGAATAATTTCAAAAAAAA-AAAAAGGGA
1 TTATTGAAGACGTTTTTGACCAAAAACAACTTGAATAATCCCAAAAAAAAGAAAAA--AA
6933082 TTATTGAAGACGTTTTTG
1 TTATTGAAGACGTTTTTG
6933100 GAAGAAAATA
Statistics
Matches: 62, Mismatches: 13, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
57 5 0.08
59 57 0.92
ACGTcount: A:0.46, C:0.11, G:0.15, T:0.29
Consensus pattern (58 bp):
TTATTGAAGACGTTTTTGACCAAAAACAACTTGAATAATCCCAAAAAAAAGAAAAAAA
Found at i:6936419 original size:52 final size:51
Alignment explanation
Indices: 6936362--6936465 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 51
6936352 TGGACAAGAA
* * * *
6936362 GACTTGTAGAAGAAGAATTCTAAAAAGAAATAGATTTTTAATAGGTAAGTTT
1 GACTTGCAGAAAAAGAATTCTAAAAAGAAA-AGAATTTTAATAGGCAAGTTT
** *
6936414 GACTTGCAGAAAAAGAATTCTAAATGGAAAGGAATTTTAATAGGCAAGTTT
1 GACTTGCAGAAAAAGAATTCTAAAAAGAAAAGAATTTTAATAGGCAAGTTT
6936465 G
1 G
6936466 TATGCTTATA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
51 19 0.42
52 26 0.58
ACGTcount: A:0.43, C:0.06, G:0.21, T:0.30
Consensus pattern (51 bp):
GACTTGCAGAAAAAGAATTCTAAAAAGAAAAGAATTTTAATAGGCAAGTTT
Found at i:6941268 original size:40 final size:40
Alignment explanation
Indices: 6941213--6941305 Score: 168
Period size: 40 Copynumber: 2.3 Consensus size: 40
6941203 TTTGTTTATA
*
6941213 AAACGCTACTAAATTCTTTTATAGTGGCGTTTATATTTGC
1 AAACGCCACTAAATTCTTTTATAGTGGCGTTTATATTTGC
6941253 AAACGCCACTAAATTCTTTTATAGTGGCGTTTATATTTGC
1 AAACGCCACTAAATTCTTTTATAGTGGCGTTTATATTTGC
*
6941293 AAACGTCACTAAA
1 AAACGCCACTAAA
6941306 AGCATACTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (40 bp):
AAACGCCACTAAATTCTTTTATAGTGGCGTTTATATTTGC
Found at i:6941569 original size:42 final size:42
Alignment explanation
Indices: 6941522--6941633 Score: 145
Period size: 42 Copynumber: 2.7 Consensus size: 42
6941512 AGAATTGCAC
* * * *
6941522 CTAAAGGCAAAAAGTTAGTGACATTTTTAAGTAAAAACG-CTA
1 CTAAAGGCAATAAGTTTGTGGCATTTCTAAGTAAAAACGAC-A
* * *
6941564 CTAAAGGCAATAAGTTTGCGGCATTTCTAAGTAGAAACGACG
1 CTAAAGGCAATAAGTTTGTGGCATTTCTAAGTAAAAACGACA
6941606 CTAAAGGCAATAAGTTTGTGGCATTTCT
1 CTAAAGGCAATAAGTTTGTGGCATTTCT
6941634 TCAATAAATG
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 60 0.98
43 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.28
Consensus pattern (42 bp):
CTAAAGGCAATAAGTTTGTGGCATTTCTAAGTAAAAACGACA
Found at i:6948726 original size:20 final size:21
Alignment explanation
Indices: 6948693--6948731 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
6948683 AAATGAAAGT
6948693 TTTATTTATTATAT-TTTTGA
1 TTTATTTATTATATATTTTGA
6948713 TTTATTT-TTAATATATTTT
1 TTTATTTATT-ATATATTTT
6948732 AAAGAGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 2 0.12
20 11 0.65
21 4 0.24
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (21 bp):
TTTATTTATTATATATTTTGA
Found at i:6952982 original size:20 final size:20
Alignment explanation
Indices: 6952957--6953008 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
6952947 TACTTATTAT
6952957 ATAAAATTTATTAAGAAATA
1 ATAAAATTTATTAAGAAATA
* * *
6952977 ATAAAACTTGTTAATAAATA
1 ATAAAATTTATTAAGAAATA
*
6952997 ATAATATTTATT
1 ATAAAATTTATT
6953009 TAGTTATTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (20 bp):
ATAAAATTTATTAAGAAATA
Done.