Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 36 of 77
Found at i:7323894 original size:16 final size:17
Alignment explanation
Indices: 7323875--7323911 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
7323865 AAAATTGAGC
7323875 AAAAAAAAT-AAAAAAT
1 AAAAAAAATAAAAAAAT
7323891 -AAAAAAATAAAAAAAT
1 AAAAAAAATAAAAAAAT
7323907 AAAAA
1 AAAAA
7323912 GTTGTAGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 8 0.42
16 7 0.37
17 4 0.21
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (17 bp):
AAAAAAAATAAAAAAAT
Found at i:7326355 original size:8 final size:8
Alignment explanation
Indices: 7326342--7326396 Score: 74
Period size: 8 Copynumber: 6.6 Consensus size: 8
7326332 AATTAAACAA
7326342 AAAAATAC
1 AAAAATAC
7326350 AAAAATAC
1 AAAAATAC
* *
7326358 AAAAACAAA
1 AAAAA-TAC
7326367 ACAAAATAC
1 A-AAAATAC
7326376 AAAAATAC
1 AAAAATAC
7326384 AAAAATAC
1 AAAAATAC
7326392 AAAAA
1 AAAAA
7326397 CAAAAAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
8 33 0.80
9 4 0.10
10 4 0.10
ACGTcount: A:0.78, C:0.13, G:0.00, T:0.09
Consensus pattern (8 bp):
AAAAATAC
Found at i:7326376 original size:26 final size:24
Alignment explanation
Indices: 7326336--7326412 Score: 88
Period size: 26 Copynumber: 3.1 Consensus size: 24
7326326 TTATTAAATT
7326336 AAACAAAAAAATACAAAAATACAA
1 AAACAAAAAAATACAAAAATACAA
7326360 AAACAAAACAAAATACAAAAATACAAA
1 AAAC-AAA-AAAATACAAAAATAC-AA
7326387 AATACAAAAACAA-A-AAAAATA-AA
1 AA-ACAAAAA-AATACAAAAATACAA
7326410 AAA
1 AAA
7326413 GGGGGTTGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 12
0.80 0.00 0.20
Matches are distributed among these distances:
22 1 0.02
23 4 0.08
24 4 0.08
25 10 0.21
26 18 0.38
27 9 0.19
28 2 0.04
ACGTcount: A:0.81, C:0.12, G:0.00, T:0.08
Consensus pattern (24 bp):
AAACAAAAAAATACAAAAATACAA
Found at i:7326383 original size:34 final size:32
Alignment explanation
Indices: 7326341--7326412 Score: 126
Period size: 34 Copynumber: 2.2 Consensus size: 32
7326331 AAATTAAACA
7326341 AAAAAATACAAAAATACAAAAACAAAACAAAAT
1 AAAAAATACAAAAATACAAAAACAAAA-AAAAT
7326374 ACAAAAATACAAAAATACAAAAACAAAAAAAAT
1 A-AAAAATACAAAAATACAAAAACAAAAAAAAT
7326407 AAAAAA
1 AAAAAA
7326413 GGGGGTTGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
32 5 0.13
33 7 0.18
34 26 0.68
ACGTcount: A:0.81, C:0.11, G:0.00, T:0.08
Consensus pattern (32 bp):
AAAAAATACAAAAATACAAAAACAAAAAAAAT
Found at i:7326403 original size:8 final size:8
Alignment explanation
Indices: 7326336--7326412 Score: 50
Period size: 8 Copynumber: 9.2 Consensus size: 8
7326326 TTATTAAATT
7326336 AAACAAAAA
1 AAAC-AAAA
7326345 AATACAAAA
1 AA-ACAAAA
*
7326354 ATACAAAA
1 AAACAAAA
7326362 ACAA-AACAA
1 A-AACAA-AA
7326371 AATACAAAA
1 AA-ACAAAA
*
7326380 ATACAAAA
1 AAACAAAA
*
7326388 ATACAAAA
1 AAACAAAA
*
7326396 ACA-AAAA
1 AAACAAAA
*
7326403 AAATAAAA
1 AAACAAAA
7326411 AA
1 AA
7326413 GGGGGTTGAT
Statistics
Matches: 57, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
7 6 0.11
8 32 0.56
9 15 0.26
10 4 0.07
ACGTcount: A:0.81, C:0.12, G:0.00, T:0.08
Consensus pattern (8 bp):
AAACAAAA
Found at i:7326487 original size:16 final size:16
Alignment explanation
Indices: 7326448--7326496 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
7326438 CATGGCACCA
* *
7326448 CTGGCCACCCACCCCT
1 CTGGTCACCCATCCCT
**
7326464 CTAATCACCCATCCCT
1 CTGGTCACCCATCCCT
7326480 CTGGTCACCCATACCCT
1 CTGGTCACCCAT-CCCT
7326497 GCAAACCTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 22 0.85
17 4 0.15
ACGTcount: A:0.18, C:0.53, G:0.08, T:0.20
Consensus pattern (16 bp):
CTGGTCACCCATCCCT
Found at i:7327970 original size:10 final size:10
Alignment explanation
Indices: 7327955--7327987 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7327945 TTTAAAATGA
7327955 AAATAATAAT
1 AAATAATAAT
7327965 AAATAATAAT
1 AAATAATAAT
7327975 AAA-AATTAAT
1 AAATAA-TAAT
7327985 AAA
1 AAA
7327988 ATTTTCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 2 0.09
10 20 0.91
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (10 bp):
AAATAATAAT
Found at i:7334143 original size:890 final size:889
Alignment explanation
Indices: 7332417--7334201 Score: 3354
Period size: 890 Copynumber: 2.0 Consensus size: 889
7332407 TATCACCATG
*
7332417 TATTATAGTAAAATGACAACACATGCTTGTGATGAGAAGTTATTAATGCACATATTTCAAGATAA
1 TATTGTAGTAAAATGACAACACATGCTTGTGATGAGAAGTTATTAATGCACATATTTCAAGATAA
7332482 CCTTACGGGATCTGTAGACAGATAGTATGTTCAACTAGATAAGACTCGTATTCATTCTTAGCAAG
66 CCTTACGGGATCTGTAGACAGATAGTATGTTCAACTAGATAAGACTCGTATTCATTCTTAGCAAG
7332547 AACTCACAAAGGCATTTCTTACACAATATCAACATGTCAGGGATCTAGCTATAGATCATCTATCT
131 AACTCACAAAGGCATTTCTTACACAATATCAACATGTCAGGGATCTAGCTATAGATCATCTATCT
*
7332612 TTACAAGGTATGAAAAAGAAAGTAATTGAGTGCTTTAAAAAATATGCATAAAGACGAAAAATTAT
196 TTACAAGGTATGAAAAAGAAAGTAATTGAGTGCTTTAAAAAATATGCATAAAGACGAAAAAATAT
*
7332677 GGCTGCACAAGTTCAACCTCTTCTCATCAAGAAAGAGATAACTATCTTATTTGTGAACATTCTGA
261 GGCTGCACAAGTTCAACCTCTTCTCATCAAGAAAGAGATAACCATCTTATTTGTGAACATTCTGA
7332742 AAGTACCATACTATGAGAGAATGATAGGCAATGCAATCAAAAACTTTACAGATATGGTGATATTA
326 AAGTACCATACTATGAGAGAATGATAGGCAATGCAATCAAAAACTTTACAGATATGGTGATATTA
7332807 AGTGAGACATTGAAAACGTCATAAAGAATGGTAAACTCGATGCAGAAGAGATGAATGGAGTAAAA
391 AGTGAGACATTGAAAACGTCATAAAGAATGGTAAACTCGATGCAGAAGAGATGAATGGAGTAAAA
7332872 AAAGGTAGAGTTTCCAAAAAGAAAGAGAATGAAGCTCAAACAGTGAACTACGTAGGGCAACAGTT
456 AAAGGTAGAGTTTCCAAAAAGAAAGAGAATGAAGCTCAAACAGTGAACTACGTAGGGCAACAGTT
7332937 CAGAGATTTCATGCCCTACCTTATGTCAGTCTATCAAACCCATTATCCTCTCATAAATAATATTA
521 CAGAGATTTCATGCCCTACCTTATGTCAGTCTATCAAACCCATTATCCTCTCATAAATAATATTA
* *
7333002 CATCCACTCCTTATCCATATCAGCCATACCAGCCATTACCACAATCAGCTTATCCGTATCAGTTT
586 CATCCACTCCTTATCCATATCAGCCATACCAGCCATTACCACAATCAACTTATCCGTATAAGTTT
7333067 TAGCCATCTTTTCAGACAGCCACCTATTTCTACAACCATTTTGCTGCACCTACCAAACTAGAATG
651 TAGCCATCTTTTCAGACAGCCACCTATTTCTACAACCATTTTGCTGCACCTACCAAACTAGAATG
*
7333132 GAGACCTAGTAATGGTTCAAGAGCCCCAAAAAATACCTAAGAAAAACTCACTTTTGACCCATTCC
716 GAGACCTAGTAATGGTTCAAGAGCCCCAAAAAATACCTAAGAAAAACCCACTTTTGACCCATTCC
*
7333197 CATGACATATACATATTTGTATCCCCGACTTATTGAGAAACATTTACTTGCTTCTGTTATTGTTG
781 CATGACATATACATATTTGTATCCCCGACTTATTGAGAAACATTTACTTACTTCTGTTATTGTTG
*
7333262 AACCTCTGAAACCTTTATTTTCTAAATGGTATGATCCCAATATA
846 AACCTCTGAAACCTTTATTTCCTAAATGGTATGATCCCAATATA
7333306 TATTGTAGTAAAATGACAACACATGCTTGTGATGAGAAGTTATTAATGCACATATTTCAAGATAA
1 TATTGTAGTAAAATGACAACACATGCTTGTGATGAGAAGTTATTAATGCACATATTTCAAGATAA
*
7333371 CCTTACGGGATCTGTAGACAGATAGTATGTTCAACTAGATAAGACTCGTATTCATTCTTGGCAAG
66 CCTTACGGGATCTGTAGACAGATAGTATGTTCAACTAGATAAGACTCGTATTCATTCTTAGCAAG
* * * *
7333436 AGCTCATAAAGGCATTTCTTACACAATATCAACATGTTAGGGTTCTAGCTATAGATCATCTATCT
131 AACTCACAAAGGCATTTCTTACACAATATCAACATGTCAGGGATCTAGCTATAGATCATCTATCT
7333501 TTACAAGGTATGAAAAAGAAAGTAATTGAGTGCTTTAAAAAATATGCATAAAGACGAAAAAATAT
196 TTACAAGGTATGAAAAAGAAAGTAATTGAGTGCTTTAAAAAATATGCATAAAGACGAAAAAATAT
*
7333566 GGCTGCACAAGTTCAACCTCTTCTCATCGAGAAAGAGATAACCATCTTATTTGTGAACATTCTGA
261 GGCTGCACAAGTTCAACCTCTTCTCATCAAGAAAGAGATAACCATCTTATTTGTGAACATTCTGA
7333631 AAGTACCATACTATGAGAGAATGATAGGCAATGCAATCAAAAACTTTACAGATATGGTGATATTA
326 AAGTACCATACTATGAGAGAATGATAGGCAATGCAATCAAAAACTTTACAGATATGGTGATATTA
*
7333696 AGTGAGATCATTGAAAATGTCATAAAGAATGGTAAACTCGATGCAGAAGAGATGAATGGAGTAAA
391 AGTGAGA-CATTGAAAACGTCATAAAGAATGGTAAACTCGATGCAGAAGAGATGAATGGAGTAAA
* * *
7333761 AAAAGGTAGAGTTTCCAAAAAGAAAGAGAATGAAGCTCAAGCGGTGAACTATGTAGGGCAACAGT
455 AAAAGGTAGAGTTTCCAAAAAGAAAGAGAATGAAGCTCAAACAGTGAACTACGTAGGGCAACAGT
7333826 TCAGAGATTTCATGCCCTACCTTATGTCAGTCTATCAAACCCATTATCCTCTCATAAATAATATT
520 TCAGAGATTTCATGCCCTACCTTATGTCAGTCTATCAAACCCATTATCCTCTCATAAATAATATT
* *
7333891 ACATCCACTCCTTATCCATATCAGCCATACCAGTCATTACCACAATCAATTTATCCGTATAAGTT
585 ACATCCACTCCTTATCCATATCAGCCATACCAGCCATTACCACAATCAACTTATCCGTATAAGTT
*
7333956 TTAGCCATCTTTTCAGACAGCCACCTATTTCTACAACCGTTTTGCTGCACCTACCAAACTAGAAT
650 TTAGCCATCTTTTCAGACAGCCACCTATTTCTACAACCATTTTGCTGCACCTACCAAACTAGAAT
* *
7334021 GGAGACCTAGTAATGGTTCAAGAGCCCTAAGAAATACCTAAGAAAAACCCACTTTTGACCCATTC
715 GGAGACCTAGTAATGGTTCAAGAGCCCCAAAAAATACCTAAGAAAAACCCACTTTTGACCCATTC
7334086 CCATGACATATACATATTTGTATCCCCGACTTATTGAGAAACATTTACTTACTTCTGTTATTGTT
780 CCATGACATATACATATTTGTATCCCCGACTTATTGAGAAACATTTACTTACTTCTGTTATTGTT
7334151 GAACCTCTGAAACCTTTATTTCCTAAATGGTATGATCCCAATATA
845 GAACCTCTGAAACCTTTATTTCCTAAATGGTATGATCCCAATATA
7334196 TATTGT
1 TATTGT
7334202 GATTATCACT
Statistics
Matches: 872, Mismatches: 23, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
889 388 0.44
890 484 0.56
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (889 bp):
TATTGTAGTAAAATGACAACACATGCTTGTGATGAGAAGTTATTAATGCACATATTTCAAGATAA
CCTTACGGGATCTGTAGACAGATAGTATGTTCAACTAGATAAGACTCGTATTCATTCTTAGCAAG
AACTCACAAAGGCATTTCTTACACAATATCAACATGTCAGGGATCTAGCTATAGATCATCTATCT
TTACAAGGTATGAAAAAGAAAGTAATTGAGTGCTTTAAAAAATATGCATAAAGACGAAAAAATAT
GGCTGCACAAGTTCAACCTCTTCTCATCAAGAAAGAGATAACCATCTTATTTGTGAACATTCTGA
AAGTACCATACTATGAGAGAATGATAGGCAATGCAATCAAAAACTTTACAGATATGGTGATATTA
AGTGAGACATTGAAAACGTCATAAAGAATGGTAAACTCGATGCAGAAGAGATGAATGGAGTAAAA
AAAGGTAGAGTTTCCAAAAAGAAAGAGAATGAAGCTCAAACAGTGAACTACGTAGGGCAACAGTT
CAGAGATTTCATGCCCTACCTTATGTCAGTCTATCAAACCCATTATCCTCTCATAAATAATATTA
CATCCACTCCTTATCCATATCAGCCATACCAGCCATTACCACAATCAACTTATCCGTATAAGTTT
TAGCCATCTTTTCAGACAGCCACCTATTTCTACAACCATTTTGCTGCACCTACCAAACTAGAATG
GAGACCTAGTAATGGTTCAAGAGCCCCAAAAAATACCTAAGAAAAACCCACTTTTGACCCATTCC
CATGACATATACATATTTGTATCCCCGACTTATTGAGAAACATTTACTTACTTCTGTTATTGTTG
AACCTCTGAAACCTTTATTTCCTAAATGGTATGATCCCAATATA
Found at i:7341100 original size:147 final size:150
Alignment explanation
Indices: 7340780--7341470 Score: 792
Period size: 147 Copynumber: 4.7 Consensus size: 150
7340770 TGAAAATTTC
* * *
7340780 TTTAAAGTTGTTGAGCCTCTGTTGAAAGGAGCTTTTTT-TA-A-GAATTTTTTTAAAGTTGTTGA
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAATTTTTTTAAAGTTGTTGA
* * * * * **
7340842 GCCTTTGGTGAGAAAAGCTTTTTTCAAGATGAGATTTTTAAAATTGTTGAGCCTCTGCCGAGAGG
66 GCCTCTGCTGAGAAGAGCTTTTTTCAAGATGA-AATTTTAAAGTTGTTGAGCCTCTGCTTAGAGG
7340907 AGCCTTTTTCAAGATGAGATT
130 AGCCTTTTTCAAGATGAGATT
* * *
7340928 TTTAAAGTTGTTG-GACCTCTGCTGAGATGAGTTTTTTTCAAGATGAGATTTTTTTAAAGCTGTT
1 TTTAAAGTTGTTGAG-CCTCTGCTGAGAGGAGCTTTTTTCAAGATGA-ATTTTTTTAAAGTTGTT
** * * * *
7340992 GAGCCTCTATTGAGAAAAG-TTTTTTCAAGAT-AAATTTTAAAGTTATTGTGCCT-TGCTTAGAT
64 GAGCCTCTGCTGAGAAGAGCTTTTTTCAAGATGAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAG
* *
7341054 GAGCTTTTTTC-ATATGAGATT
129 GAGCCTTTTTCAAGATGAGATT
*
7341075 TTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTTCAAGATGAGATTTTTTTAAAGTTGTTG
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGA-ATTTTTTTAAAGTTGTTG
* * * *
7341140 AGCCTCTGCTGAGAGGAGCTTTTTT-AAGAT-AAATTTTAAAGTTGTTGTGCCTTTACTTAGAGG
65 AGCCTCTGCTGAGAAGAGCTTTTTTCAAGATGAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGG
*
7341203 AACCTTTTTC-AGATGAGATT
130 AGCCTTTTTCAAGATGAGATT
* ** *
7341223 TTTAAA-TTGTTGAGCCTCTGCTAAGAGGAGC-TTTTTCAAGAT-AA-AATTTTAAAGTTGTTAA
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAATTTTTTTAAAGTTGTTGA
* * * * *
7341284 GCCTTTGCTGAGAAGAGCTTTTTTC-ATATGAGATTTTAAAGTTGTTGAGCCTCTGCTAAGAGAA
66 GCCTCTGCTGAGAAGAGCTTTTTTCAAGATGAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGA
*
7341348 GCTTTTTTCAAGATGA-ATT
131 GCCTTTTTCAAGATGAGATT
* * * **
7341367 TTTAAAGTTGTTGAGCCTTTGTTGAGATGAGCTTTTTTCAAGAT-AA-AATTTTAAAGTTGTTGA
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAATTTTTTTAAAGTTGTTGA
* * * *
7341430 ACCTCTACTGAGAGGAGC-TTTTTCAAGATAAAATTTTAAAG
66 GCCTCTGCTGAGAAGAGCTTTTTTCAAGATGAAATTTTAAAG
7341471 CTTTTTCAAG
Statistics
Matches: 469, Mismatches: 60, Indels: 30
0.84 0.11 0.05
Matches are distributed among these distances:
143 39 0.08
144 45 0.10
145 34 0.07
146 67 0.14
147 132 0.28
148 86 0.18
149 18 0.04
150 2 0.00
151 14 0.03
152 32 0.07
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (150 bp):
TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAATTTTTTTAAAGTTGTTGA
GCCTCTGCTGAGAAGAGCTTTTTTCAAGATGAAATTTTAAAGTTGTTGAGCCTCTGCTTAGAGGA
GCCTTTTTCAAGATGAGATT
Found at i:7341110 original size:49 final size:50
Alignment explanation
Indices: 7340780--7341458 Score: 732
Period size: 48 Copynumber: 13.9 Consensus size: 50
7340770 TGAAAATTTC
* * * **
7340780 TTTAAAGTTGTTGAGCCTCTGTTGAAAGGAGCTTTTTTTAAGA--ATTTT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
* * **
7340828 TTTAAAGTTGTTGAGCCTTTGGTGAGAAAAGCTTTTTTCAAGATGAGATT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
* * *
7340878 TTTAAAATTGTTGAGCCTCTGCCGAGAGGAGCCTTTTTCAAGATGAGATT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
* *
7340928 TTTAAAGTTGTTG-GACCTCTGCTGAGATGAGTTTTTTTCAAGATGAGATTTT
1 TTTAAAGTTGTTGAG-CCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGA--TT
* ** ** *
7340980 TTTAAAGCTGTTGAGCCTCTATTGAGAAAAG-TTTTTTCAAGAT-A-AAT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
* * * * *
7341027 TTTAAAGTTATTGTGCCT-TGCTTAGATGAGCTTTTTTC-ATATGAGATT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
*
7341075 TTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTTCAAGATGAGATTTT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGA--TT
*
7341127 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTT-AAGAT-A-AAT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
* * * * * *
7341174 TTTAAAGTTGTTGTGCCTTTACTTAGAGGAACCTTTTTC-AGATGAGATT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
* * *
7341223 TTTAAA-TTGTTGAGCCTCTGCTAAGAGGAGC-TTTTTCAAGAT-AAAAT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
* * * *
7341270 TTTAAAGTTGTTAAGCCTTTGCTGAGAAGAGCTTTTTTC-ATATGAGA-T
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
* *
7341318 TTTAAAGTTGTTGAGCCTCTGCTAAGAGAAGCTTTTTTCAAGATGA-ATT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
* * * * *
7341367 TTTAAAGTTGTTGAGCCTTTGTTGAGATGAGCTTTTTTCAAGAT-AAAAT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
* *
7341416 TTTAAAGTTGTTGAACCTCTACTGAGAGGAGC-TTTTTCAAGAT
1 TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGAT
7341459 AAAATTTTAA
Statistics
Matches: 528, Mismatches: 80, Indels: 46
0.81 0.12 0.07
Matches are distributed among these distances:
46 10 0.02
47 76 0.14
48 152 0.29
49 111 0.21
50 96 0.18
51 17 0.03
52 65 0.12
53 1 0.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (50 bp):
TTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTTCAAGATGAGATT
Found at i:7341477 original size:24 final size:24
Alignment explanation
Indices: 7341445--7341494 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
7341435 TACTGAGAGG
7341445 AGCTTTTTCAAGATAAAATTTTAA
1 AGCTTTTTCAAGATAAAATTTTAA
7341469 AGCTTTTTCAAGATAAAATTTTAA
1 AGCTTTTTCAAGATAAAATTTTAA
7341493 AG
1 AG
7341495 TTGTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (24 bp):
AGCTTTTTCAAGATAAAATTTTAA
Found at i:7341514 original size:72 final size:72
Alignment explanation
Indices: 7341400--7341542 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 72
7341390 GAGATGAGCT
* *
7341400 TTTTTCAAGATAAAATTTTAAAGTTGTTGAACCTCTACTGAGAGGAGCTTTTTCAAGATAAAATT
1 TTTTTCAAGATAAAATTTTAAAGTTGTTGAACCTCTACTGAGAAGAACTTTTTCAAGATAAAATT
7341465 TTAAAGC
66 TTAAAGC
* *
7341472 TTTTTCAAGATAAAATTTTAAAGTTGTT-AAGCCTTTGCTGAGAAGAACTTTTTCAAGATAAAAT
1 TTTTTCAAGATAAAATTTTAAAGTTGTTGAA-CCTCTACTGAGAAGAACTTTTTCAAGATAAAAT
7341536 TTTAAAG
65 TTTAAAG
7341543 TTGTTGAGCC
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
71 2 0.03
72 64 0.97
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.38
Consensus pattern (72 bp):
TTTTTCAAGATAAAATTTTAAAGTTGTTGAACCTCTACTGAGAAGAACTTTTTCAAGATAAAATT
TTAAAGC
Found at i:7341596 original size:51 final size:48
Alignment explanation
Indices: 7341471--7341606 Score: 191
Period size: 48 Copynumber: 2.8 Consensus size: 48
7341461 AATTTTAAAG
* * *
7341471 CTTTTTCAAGATAAAATTTTAAAGTTGTTAAGCCTTTGCTGAGAAGAA
1 CTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTAAGAAGAA
* *
7341519 CTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGTTAAGAGGAA
1 CTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTAAGAAGAA
*
7341567 CTCTTTTCAAGATGATAATTTTTAAAGTTGTTGAGCCTCT
1 CT-TTTTCAAGAT-A-AAATTTTAAAGTTGTTGAGCCTCT
7341607 ATCGAGAGGA
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
48 45 0.57
49 10 0.13
50 1 0.01
51 23 0.29
ACGTcount: A:0.32, C:0.12, G:0.17, T:0.40
Consensus pattern (48 bp):
CTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTAAGAAGAA
Found at i:7341615 original size:51 final size:47
Alignment explanation
Indices: 7341471--7341623 Score: 182
Period size: 48 Copynumber: 3.1 Consensus size: 47
7341461 AATTTTAAAG
* *
7341471 CTTTTTCAAGATAAAATTTTAAAGTTGTTAAGCCT-TTGCTGAGAAGAA
1 CTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTT-C-GAGAGGAA
**
7341519 CTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGTTAAGAGGAA
1 CTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCT-TCGAGAGGAA
* *
7341567 CTCTTTTCAAGATGATAATTTTTAAAGTTGTTGAGCCTCTATCGAGAGGAG
1 CT-TTTTCAAGAT-A-AAATTTTAAAGTTGTTGAGCCTCT-TCGAGAGGAA
7341618 CTTTTT
1 CTTTTT
7341624 TCAGATTTTA
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
48 42 0.46
49 11 0.12
50 6 0.07
51 32 0.35
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (47 bp):
CTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTTCGAGAGGAA
Found at i:7341638 original size:51 final size:52
Alignment explanation
Indices: 7341473--7341656 Score: 156
Period size: 51 Copynumber: 3.7 Consensus size: 52
7341463 TTTTAAAGCT
* * *
7341473 TTTTCAAGAT-A-AAA-TTTTAAAGTTGTTAAGCCT-T-TGCTGAGAAGAACT-
1 TTTTCAAGATGATAAATTTTTAAAGTTGTTGAGCCTCTAT-C-AAGAGGAACTC
* *
7341521 TTTTCAAGAT-A-AAA-TTTTAAAGTTGTTGAGCCTCTGTTAAGAGGAACTC
1 TTTTCAAGATGATAAATTTTTAAAGTTGTTGAGCCTCTATCAAGAGGAACTC
* * *
7341570 TTTTCAAGATGAT-AATTTTTAAAGTTGTTGAGCCTCTATCGAGAGGAGCTT
1 TTTTCAAGATGATAAATTTTTAAAGTTGTTGAGCCTCTATCAAGAGGAACTC
** * *
7341621 TTTTC-AGATTTTAAATTTTCAAAAGTTGTCGAGCCT
1 TTTTCAAGATGATAAATTTT-TAAAGTTGTTGAGCCT
7341657 TAAATGAGAA
Statistics
Matches: 115, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
48 40 0.35
49 11 0.10
50 9 0.08
51 41 0.36
52 14 0.12
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (52 bp):
TTTTCAAGATGATAAATTTTTAAAGTTGTTGAGCCTCTATCAAGAGGAACTC
Found at i:7342025 original size:18 final size:18
Alignment explanation
Indices: 7342002--7342043 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7341992 ATTAAATTAA
* *
7342002 ACAAAAATATAAAAAAAT
1 ACAAAAAAAGAAAAAAAT
*
7342020 ACAAAAAAAGAGAAAAAT
1 ACAAAAAAAGAAAAAAAT
7342038 ACAAAA
1 ACAAAA
7342044 TGCAAAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.79, C:0.07, G:0.05, T:0.10
Consensus pattern (18 bp):
ACAAAAAAAGAAAAAAAT
Found at i:7342146 original size:16 final size:16
Alignment explanation
Indices: 7342108--7342151 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
7342098 CACCATTGGC
*
7342108 CACCCACCCTTCTGAT
1 CACCCATCCTTCTGAT
*
7342124 CACCCATCCTTCTGGT
1 CACCCATCCTTCTGAT
7342140 CACCCATACCTT
1 CACCCAT-CCTT
7342152 GCAAACCTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 21 0.84
17 4 0.16
ACGTcount: A:0.18, C:0.48, G:0.07, T:0.27
Consensus pattern (16 bp):
CACCCATCCTTCTGAT
Found at i:7347319 original size:18 final size:20
Alignment explanation
Indices: 7347296--7347333 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
7347286 CAAAAATATT
7347296 ATTTT-CACCTTTTA-AAAG
1 ATTTTCCACCTTTTATAAAG
*
7347314 ATTTTCCAGCTTTTATAAAG
1 ATTTTCCACCTTTTATAAAG
7347334 CACCGCTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.45
Consensus pattern (20 bp):
ATTTTCCACCTTTTATAAAG
Found at i:7352137 original size:13 final size:13
Alignment explanation
Indices: 7352111--7352145 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
7352101 ATTTTATCTT
7352111 CTGCTACA-TTGA
1 CTGCTACAGTTGA
7352123 CTGCTACAGTTGA
1 CTGCTACAGTTGA
7352136 CTGCTACAGT
1 CTGCTACAGT
7352146 ATTTTTGTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 8 0.36
13 14 0.64
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (13 bp):
CTGCTACAGTTGA
Found at i:7355689 original size:812 final size:799
Alignment explanation
Indices: 7353604--7357035 Score: 4150
Period size: 795 Copynumber: 4.3 Consensus size: 799
7353594 AAGTATTTTC
* * *
7353604 TTGCCTTTAGACTCCTTCAAATCATGTCCTAAAAAATGAAATAATAAAAACCAAATATTGTTCAC
1 TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATGAAATAATAAAAACCAAAGATTATTCAC
* *
7353669 CATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACTTTTGTATTAGGGCAT
66 CATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCAT
* * * *
7353734 GGCTATAATTTTCAACTTAAAATAGGGAAATTCATATTTACTCTTGCCCCTCTAAAAACTTCTTA
131 GGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTA-TTTTGCCCC-CCAAAAAATTCTTA
* * *
7353799 ATATGTACA-GTCCTTCTTTGTATTATTTGTTA-TTAAAAAAGATTAGTAC-TTTATG-TGATCA
194 ATATGTA-AGGACCTCCTTTGTATTATTTG-TAGTTAAAAAAGATTAGTACTTTTATGATGAT-T
7353860 ATTTTATAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCACACTTATCCCTATCTA
256 ATTTTATAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCACACTTATCCCTATCTA
* * * * *
7353925 CAGCATCTACCTGACTTGCTTGGTTAGGGAAGGATTTTATAATTGATTCAAATTAAAGTCTTTCC
321 CAGGATCTACCTGACTTGCTTGGTTAGGGAACGATATTATAATTGATTCAAATTAGACTCTTTCC
* * * ***
7353990 AATTGATCA-TGAGATTAATATGTCGATCGGTAGCTTTTTTTGGACTCGTTGTATGGCCAAAATT
386 AATTGATCACTG-GATTAATGTGTCGATCGGTAGCTTTTTTTAGCCTCGTTGTACACCCAAAATT
* * * *
7354054 AAGCTCATTCGTAGTCTTGTCCCAAGTTGACGTAAATTTAACCATTATTAGAGTTGAA--TGGCC
450 AAGCTCATCCATAGTCTTGTCCCAAGTTGACCTAAATTTAACCATTGTTAGAGTTGAAGTTGGCC
* * ** * * *
7354117 TACTAATTTGCTAGAGTGATTGTTGATTGACTAGCATGCATTTTCTTATCAAATTTTGTTAAAAT
515 TACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTATCTAATTTTGTT-AAAT
* * * *
7354182 CGAGAAATTAATTAATTGTTTATTAATCCAAATACAAAATTTGATGTTTAC-AAAATCATCGACT
579 CGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCGACC
* * * * *
7354246 AAACAAAATCTTAAAAATTAGTTCCACTAGATTAAATTTACTAGTACTTCGACTAAGCATTTCTC
644 AAACAAAATCTTAATAATTAATTCCACTAGATTAAAATTACTAGTACTTTGACTAAGCTTTTCTC
* * * * ** * *
7354311 ATATAAACATTTG-CA--A--T--TACCATTCGATGATAGGTAAATGATGAATTATTCCAATTCA
709 ATATAAAAAATTGAAATTATTTAATACCATTCCATGATACATAAATGATGACTTATTCCAATTAA
7354369 AAAAGAAATAGAAATCTCCCTAGATT
774 AAAAGAAATAGAAATCTCCCTAGATT
*
7354395 TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAAATTAAATAATAAAAACCAAAGATTATTCA
1 TTGCCTTTAGACTCCCTCAAATCATGTCCT-AAAAAATGAAATAATAAAAACCAAAGATTATTCA
* * *
7354460 CCATGTATAAGTCAAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACCTTTGTATTAGGGC
65 CCATATATAAGTC-AATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGC
*
7354525 ATGGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTATTTTTTGCCCCTCGAAATAAATT
129 ATGGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTA--TTTTGCCCC-CCAAA-AAATT
* * * *
7354590 CTTAATATATACGGACCTCTTTTGTGTTATTTGTAGTTAAAAAAGATTAGTAC-TTTAT-ATGAT
190 CTTAATATGTAAGGACCTCCTTTGTATTATTTGTAGTTAAAAAAGATTAGTACTTTTATGATGAT
* * * * *
7354653 CGATTTTATAGCTTCTTTTTTATTTAAATTTGACTAATTTATTTCTAACTGA-TCTTATCCCTAT
255 -TATTTTATAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAAC-CACACTTATCCCTAT
* * * * *
7354717 TTAGAGGATCTACTTGACTTGCTTGGCTAGGGAACGATATTATAACTGATTCAAATTAGACTCTT
318 CTACAGGATCTACCTGACTTGCTTGGTTAGGGAACGATATTATAATTGATTCAAATTAGACTCTT
* * *** * * ** * * *
7354782 TACAATTGATCAGTGGATGCGTTTGTCGATTGGTAGCTTTTTTGGGGCTTGTTGTACGCCCAAAA
383 TCCAATTGATCACTGGATTAATGTGTCGATCGGTAGCTTTTTTTAGCCTCGTTGTACACCCAAAA
* * ** *
7354847 TTAAGCTCATCCGTAGTCTTGTCCCAGGTTGATTTAAATTTAACCATTGTTAGAGTTGAACTTGG
448 TTAAGCTCATCCATAGTCTTGTCCCAAGTTGACCTAAATTTAACCATTGTTAGAGTTGAAGTTGG
** * * * * * *
7354912 TGTACTGACTGGCTAGAGTGATTATTGATCAACTAGGATGTATTTTCTTGTTTAATTTTGTTAAA
513 CCTACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTATCTAATTTTGTTAAA
* *
7354977 TTGAGAAATTAATTAATTATTGATTAATCCAAATACAAATTTTGATATTTACAAAAATCATCGAC
578 TCGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCGAC
* * * * *
7355042 CAAATAAAATCTTAATAATTAATTTCACCAGATTAAAATTACTAGTATTTTGACTAGGCTTTTCT
643 CAAACAAAATCTTAATAATTAATTCCACTAGATTAAAATTACTAGTACTTTGACTAAGCTTTTCT
*
7355107 CATATAAAAAATTGAAATTATTTAATA-CATGCCATGATACATAAATGATGACTTATTCCAATTA
708 CATATAAAAAATTGAAATTATTTAATACCATTCCATGATACATAAATGATGACTTATTCCAATTA
7355171 AAAAAGAAATAGAAATCTCCCTAGATT
773 AAAAAGAAATAGAAATCTCCCTAGATT
* * * *
7355198 TTGCCTTTAGA-TCCCTCAAATGATGTCCTAAAAAAATAAAAAAATAAAAACCAATGATTATTCA
1 TTGCCTTTAGACTCCCTCAAATCATGTCCT-AAAAAATGAAATAATAAAAACCAAAGATTATTCA
* *
7355262 CCATATATAAGTCAATTTCCTTTTTAAAGGAATAAGTCCTTATCATTTACATATATATTAGGGCA
65 CCATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCA
* *
7355327 TGGCTATAATTTTCAACTTAAAATAAGGAAATTCTTACTTACTTTTGCCCCCGCCCCCCCAAAAA
130 TGGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTA-TTTT------G-CCCCCCAAAAA
* *
7355392 ATTTCTTAATATGCAAGGACCTCCTTTGTATTATTTGTAGTTAAAAAATATTAGTACTTTGTATG
187 A-TTCTTAATATGTAAGGACCTCCTTTGTATTATTTGTAGTTAAAAAAGATTAGTACTTT-TATG
* * * * * ** *** *
7355457 ATTGGTTTTATATCTATATCTTCTTTTTTTATTTAAAATTAACTAATCCCTTTCTAATTGCTCTT
250 A-T-G-ATTAT-TTTATAGCTTC-TTTTTTATTTAAAGTTGACTAATCTATTTCTAACCACACTT
* ** *
7355522 ATCCCTATCTGCAGGATCTACCTGACTTGAAT-GTTGGCGGAA-GATATTATAATTGATTCAAAT
310 ATCCCTATCTACAGGATCTACCTGACTTGCTTGGTTAG-GGAACGATATTATAATTGATTCAAAT
* * * * * *
7355585 TAGACTCTTTCCAATAGACCACTGGATTAATGTCTCGATCGATAGCCTTTCTTAAGCCT-GTTGT
374 TAGACTCTTTCCAATTGATCACTGGATTAATGTGTCGATCGGTAG-CTTTTTTTAGCCTCGTTGT
* * * *
7355649 GA-ACCCAAAATTAAGCTCATCCATAGTCTTGTCCCAGGTTGACCTCAATTGAACCATTGTTAGT
438 -ACACCCAAAATTAAGCTCATCCATAGTCTTGTCCCAAGTTGACCTAAATTTAACCATTGTTAGA
* * * * * * * *
7355713 GTTGAGGTTAGCCTATTGATTGGCTAAAATGATTGTTGATCGACCAACATGTATTTTCTTGTCTA
502 GTTGAAGTTGGCCTACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTATCTA
* *
7355778 ATTTTGTTAAATCGATAAATTAATTAATTGTTGATTAATCCAAATACAAAATTTGATATTTACAA
567 ATTTTGTTAAATCGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAA
* * *
7355843 AAATCATCGACCAAATAAAATC--AATAATTAATTCCGCTAGATTAAAATTACTAATACTTTGAC
632 AAATCATCGACCAAACAAAATCTTAATAATTAATTCCACTAGATTAAAATTACTAGTACTTTGAC
* * * *
7355906 TAAGCTTTTCTCATA-GAAAAATTGCAATTATTTAATACCATTCCAAGATACATAAATGATGATT
697 TAAGCTTTTCTCATATAAAAAATTGAAATTATTTAATACCATTCCATGATACATAAATGATGACT
* *
7355970 TATTCCAATCAAAAAAGAAATATAAATCTCCCTAGATT
762 TATTCCAATTAAAAAAGAAATAGAAATCTCCCTAGATT
* *
7356008 TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATGAAATAGTAAAACCCAAAGATTATTCAC
1 TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATGAAATAATAAAAACCAAAGATTATTCAC
7356073 CATATATAAGTCAATTTCCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCA
66 CATATATAAGTCAATTT-CCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCA
* * ** *
7356138 TGGCTATAATTTTCAACTTAAAATAGGGAAATT-TTTTTTATTTTTCCCCTAAAAAAATGCTTAA
130 TGGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTATTTTGCCCCCCAAAAAATTCTTAA
* ** * *
7356202 TTTGTTCGGACCTCCTTTTGTATTATATGTAGTTAAAAACGATTAGTA-TTTTAT-ATGATTGAT
195 TATGTAAGGACCTCC-TTTGTATTATTTGTAGTTAAAAAAGATTAGTACTTTTATGATGATT-AT
*
7356265 TTTATAGCTTCTTTTTTATTGAAAGTTGACTAATCTATTTCTAACCACACTTATCCCTATCTACA
258 TTTATAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCACACTTATCCCTATCTACA
* * * * * * *
7356330 GGATCTACCTTACTTGCTTGGTTGGGGGAGGATATTATAATTGATTTAAGTTAGACT-TTTGTCA
323 GGATCTACCTGACTTGCTTGGTTAGGGAACGATATTATAATTGATTCAAATTAGACTCTTT-CCA
* * * * * ** ** * *
7356394 ATTGATCACTAGA-TACATGTGTCGGTCCGTTGGTTTTTTTTTAGGTTCGTTGTACGTCTAGAAT
387 ATTGATCACTGGATTA-ATGTGTCGAT-CGGTAG-CTTTTTTTAGCCTCGTTGTACACCCAAAAT
* * * * * *
7356458 TTAGCTGATCATGCATAATCTCGTCCCAAGTTGATCTAAATTTAACCATTGTTAAAGTTGAAGTT
449 TAAGC---TCATCCATAGTCTTGTCCCAAGTTGACCTAAATTTAACCATTGTTAGAGTTGAAGTT
* * * *
7356523 GGCCTGCTGATTGGCTAGATTGATTGTTAATCAACCAGTATGTATTTTCTTATCTAATTTTGTTA
511 GGCCTACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTATCTAATTTTGTTA
* * *
7356588 AATTGAGAAATTAATTAATCATTGATTAATCCAAATACAAAATTTGATGTTTACAAAAATCATCG
576 AATCGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCG
* *
7356653 ACCAAACAAAATCTTAATAATTAGTTCCACTATATTAAAATTACTAGTACTTTGACTAAGCTTTT
641 ACCAAACAAAATCTTAATAATTAATTCCACTAGATTAAAATTACTAGTACTTTGACTAAGCTTTT
* * * *
7356718 CTCATAAAAAAAATT-ATAATTATTTAATACCATTCCACGA-AGCATAAATAATGACATATTCCA
706 CTCATATAAAAAATTGA-AATTATTTAATACCATTCCATGATA-CATAAATGATGACTTATTCCA
*
7356781 ATT-AAAAATAAA-AGAAATCTCCCTAGATT
769 ATTAAAAAAGAAATAGAAATCTCCCTAGATT
* * * * *
7356810 TTGGCTTTAGACTCCCTCAAATCATGTCGTAAAAAATGAAATAATAAGAACCAAAGATTATTAAA
1 TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATGAAATAATAAAAACCAAAGATTATTCAC
* *
7356875 CTTATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCGTTTACATATGTATTAGGGCAT
66 CATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCAT
* *
7356940 GGCTATAATTTCTCAACTTAAAATAGGGAAATTGTTATTTATTTTTG-CCCCTAAAAACA-TCTT
131 GGCTATAATTT-TCAACTTAAAATAGGGAAATTCTTATTTA-TTTTGCCCCCCAAAAA-ATTCTT
* * * * * *
7357003 ACTATGTATGGTCTTTCTTTGTATTAATTGTAG
193 AATATGTAAGGACCTCCTTTGTATTATTTGTAG
7357036 ATTATTACTT
Statistics
Matches: 2276, Mismatches: 302, Indels: 115
0.85 0.11 0.04
Matches are distributed among these distances:
791 29 0.01
792 43 0.02
793 91 0.04
794 15 0.01
795 342 0.15
796 114 0.05
797 146 0.06
798 16 0.01
799 1 0.00
800 8 0.00
801 339 0.15
802 226 0.10
803 157 0.07
804 56 0.02
805 3 0.00
806 54 0.02
807 6 0.00
808 3 0.00
809 25 0.01
810 173 0.08
811 97 0.04
812 260 0.11
813 72 0.03
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (799 bp):
TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATGAAATAATAAAAACCAAAGATTATTCAC
CATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCAT
GGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTATTTTGCCCCCCAAAAAATTCTTAAT
ATGTAAGGACCTCCTTTGTATTATTTGTAGTTAAAAAAGATTAGTACTTTTATGATGATTATTTT
ATAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCACACTTATCCCTATCTACAGGA
TCTACCTGACTTGCTTGGTTAGGGAACGATATTATAATTGATTCAAATTAGACTCTTTCCAATTG
ATCACTGGATTAATGTGTCGATCGGTAGCTTTTTTTAGCCTCGTTGTACACCCAAAATTAAGCTC
ATCCATAGTCTTGTCCCAAGTTGACCTAAATTTAACCATTGTTAGAGTTGAAGTTGGCCTACTGA
TTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTATCTAATTTTGTTAAATCGAGAAA
TTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCGACCAAACAAA
ATCTTAATAATTAATTCCACTAGATTAAAATTACTAGTACTTTGACTAAGCTTTTCTCATATAAA
AAATTGAAATTATTTAATACCATTCCATGATACATAAATGATGACTTATTCCAATTAAAAAAGAA
ATAGAAATCTCCCTAGATT
Found at i:7356898 original size:801 final size:797
Alignment explanation
Indices: 7353604--7357035 Score: 4180
Period size: 801 Copynumber: 4.3 Consensus size: 797
7353594 AAGTATTTTC
* * *
7353604 TTGCCTTTAGACTCCTTCAAATCATGTCCTAAAAAATGAAATAATAAAAACCAAATATTGTTCAC
1 TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATGAAATAATAAAAACCAAAGATTATTCAC
* *
7353669 CATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACTTTTGTATTAGGGCAT
66 CATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCAT
* * * * *
7353734 GGCTATAATTTTCAACTTAAAATAGGGAAATTCATATTTACTCTTGCCCCTCTAAAAACTTCTTA
131 GGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTACTTTTTCCCCT-AAAAAAATTCTTA
* * * * *
7353799 ATATGTACAGTCCTTCTTTGTATTATTTGTTA-TTAAAAAAGATTAGTACTTTATGTGATCAATT
195 ATATGTACGGACCTCCTTTGTATTATTTG-TAGTTAAAAAAGATTAGTACTTTATATGATCGATT
7353863 TTATAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCACACTTATCCCTATCTACAG
259 TTATAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCACACTTATCCCTATCTACAG
* * * *
7353928 CATCTACCTGACTTGCTTGGTTAGGGAAGGATTTTATAATTGATTCAAATTAAAGTCTTTCCAAT
324 GATCTACCTGACTTGCTTGGTTAGGGAAGGATATTATAATTGATTCAAATTAGACTCTTTCCAAT
* *
7353993 TGATCA-TGAGATTAATATGTCGATCGGTAGCTTTTTTT-GGACTCGTTGTATGGCCAAAATTAA
389 TGATCACT-AGATTAATGTGTCGATCGGTAGCTTTTTTTAGGACT-GTTGTA-CGCCAAAATTAA
* * *
7354056 GCTCATTCGTAGTCTTGTCCCAAGTTGA-CGTAAATTTAACCATTATTAGAGTTGAA--TGGCCT
451 GCTCATCCATAGTCTTGTCCCAAGTTGATC-TAAATTTAACCATTGTTAGAGTTGAAGTTGGCCT
* * ** * * *
7354118 ACTAATTTGCTAGAGTGATTGTTGATTGACTAGCATGCATTTTCTTATCAAATTTTGTTAAAATC
515 ACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTATCTAATTTTGTT-AAATC
* * * *
7354183 GAGAAATTAATTAATTGTTTATTAATCCAAATACAAAATTTGATGTTTAC-AAAATCATCGACTA
579 GAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCGACCA
* * * * *
7354247 AACAAAATCTTAAAAATTAGTTCCACTAGATTAAATTTACTAGTACTTCGACTAAGCATTTCTCA
644 AACAAAATCTTAATAATTAATTCCACTAGATTAAAATTACTAGTACTTTGACTAAGCTTTTCTCA
* * * * ** *
7354312 TATAAACATT-TGCA--A--T--TACCATTCGATGATAGGTAAATGATGA-ATTATTCCAATTCA
709 TAAAAAAATTAT-AATTATTTAATACCATTCCATGATACATAAATGATGACA-TATTCCAATTAA
7354369 AAAAGAAATAGAAATCTCCCTAGATT
772 AAAAGAAATAGAAATCTCCCTAGATT
*
7354395 TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAAATTAAATAATAAAAACCAAAGATTATTCA
1 TTGCCTTTAGACTCCCTCAAATCATGTCCT-AAAAAATGAAATAATAAAAACCAAAGATTATTCA
* * *
7354460 CCATGTATAAGTCAAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACCTTTGTATTAGGGC
65 CCATATATAAGTC-AATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGC
* *
7354525 ATGGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTATTTTTTGCCCCTCGAAATAAATT
129 ATGGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTACTTTTT-CCCCT--AAAAAAATT
* * *
7354590 CTTAATATATACGGACCTCTTTTGTGTTATTTGTAGTTAAAAAAGATTAGTACTTTATATGATCG
191 CTTAATATGTACGGACCTCCTTTGTATTATTTGTAGTTAAAAAAGATTAGTACTTTATATGATCG
* * * * *
7354655 ATTTTATAGCTTCTTTTTTATTTAAATTTGACTAATTTATTTCTAACTGA-TCTTATCCCTATTT
256 ATTTTATAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAAC-CACACTTATCCCTATCT
* * * * * *
7354719 AGAGGATCTACTTGACTTGCTTGGCTAGGGAACGATATTATAACTGATTCAAATTAGACTCTTTA
320 ACAGGATCTACCTGACTTGCTTGGTTAGGGAAGGATATTATAATTGATTCAAATTAGACTCTTTC
* * *** * * * *
7354784 CAATTGATCAGTGGATGCGTTTGTCGATTGGTAGC-TTTTTTGGGGCTTGTTGTACGCCCAAAAT
385 CAATTGATCACTAGATTAATGTGTCGATCGGTAGCTTTTTTTAGGAC-TGTTGTACG-CCAAAAT
* * * * *
7354848 TAAGCTCATCCGTAGTCTTGTCCCAGGTTGATTTAAATTTAACCATTGTTAGAGTTGAACTTGGT
448 TAAGCTCATCCATAGTCTTGTCCCAAGTTGATCTAAATTTAACCATTGTTAGAGTTGAAGTTGGC
* * * * * * *
7354913 GTACTGACTGGCTAGAGTGATTATTGATCAACTAGGATGTATTTTCTTGTTTAATTTTGTTAAAT
513 CTACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTATCTAATTTTGTTAAAT
* *
7354978 TGAGAAATTAATTAATTATTGATTAATCCAAATACAAATTTTGATATTTACAAAAATCATCGACC
578 CGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCGACC
* * * * *
7355043 AAATAAAATCTTAATAATTAATTTCACCAGATTAAAATTACTAGTATTTTGACTAGGCTTTTCTC
643 AAACAAAATCTTAATAATTAATTCCACTAGATTAAAATTACTAGTACTTTGACTAAGCTTTTCTC
* *
7355108 ATATAAAAAATTGA-AATTATTTAATA-CATGCCATGATACATAAATGATGACTTATTCCAATTA
708 ATA-AAAAAATT-ATAATTATTTAATACCATTCCATGATACATAAATGATGACATATTCCAATTA
7355171 AAAAAGAAATAGAAATCTCCCTAGATT
771 AAAAAGAAATAGAAATCTCCCTAGATT
* * * *
7355198 TTGCCTTTAGA-TCCCTCAAATGATGTCCTAAAAAAATAAAAAAATAAAAACCAATGATTATTCA
1 TTGCCTTTAGACTCCCTCAAATCATGTCCT-AAAAAATGAAATAATAAAAACCAAAGATTATTCA
* *
7355262 CCATATATAAGTCAATTTCCTTTTTAAAGGAATAAGTCCTTATCATTTACATATATATTAGGGCA
65 CCATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCA
* * * *
7355327 TGGCTATAATTTTCAACTTAAAATAAGGAAATTCTTACTTACTTTTGCCCCCGCCCCCCCAAAAA
130 TGGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTACTTTT--------TCCCCTAAAAA
* * * * *
7355392 ATTTCTTAATATGCAAGGACCTCCTTTGTATTATTTGTAGTTAAAAAATATTAGTACTTTGTATG
187 AATTCTTAATATGTACGGACCTCCTTTGTATTATTTGTAGTTAAAAAAGATTAGTACTTTATATG
* * * * * ** *** *
7355457 ATTGGTTTTATATCTATATCTTCTTTTTTTATTTAAAATTAACTAATCCCTTTCTAATTGCTCTT
252 A-TCG----AT-TTTATAGCTTC-TTTTTTATTTAAAGTTGACTAATCTATTTCTAACCACACTT
* ** *
7355522 ATCCCTATCTGCAGGATCTACCTGACTTGAAT-GTTGGCGGAA-GATATTATAATTGATTCAAAT
310 ATCCCTATCTACAGGATCTACCTGACTTGCTTGGTTAG-GGAAGGATATTATAATTGATTCAAAT
* * * * * * * * *
7355585 TAGACTCTTTCCAATAGACCACTGGATTAATGTCTCGATCGATAGCCTTTCTTAAGCCTGTTGTG
374 TAGACTCTTTCCAATTGATCACTAGATTAATGTGTCGATCGGTAGCTTTTTTTAGGACTGTTGT-
* * * * *
7355650 AAC-CCAAAATTAAGCTCATCCATAGTCTTGTCCCAGGTTGACCTCAATTGAACCATTGTTAGTG
438 -ACGCCAAAATTAAGCTCATCCATAGTCTTGTCCCAAGTTGATCTAAATTTAACCATTGTTAGAG
* * * * * * * *
7355714 TTGAGGTTAGCCTATTGATTGGCTAAAATGATTGTTGATCGACCAACATGTATTTTCTTGTCTAA
502 TTGAAGTTGGCCTACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTATCTAA
* *
7355779 TTTTGTTAAATCGATAAATTAATTAATTGTTGATTAATCCAAATACAAAATTTGATATTTACAAA
567 TTTTGTTAAATCGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAA
* * *
7355844 AATCATCGACCAAATAAAATC--AATAATTAATTCCGCTAGATTAAAATTACTAATACTTTGACT
632 AATCATCGACCAAACAAAATCTTAATAATTAATTCCACTAGATTAAAATTACTAGTACTTTGACT
* ** * **
7355907 AAGCTTTTCTCATAGAAAAATTGCAATTATTTAATACCATTCCAAGATACATAAATGATGATTTA
697 AAGCTTTTCTCATAAAAAAATTATAATTATTTAATACCATTCCATGATACATAAATGATGACATA
* *
7355972 TTCCAATCAAAAAAGAAATATAAATCTCCCTAGATT
762 TTCCAATTAAAAAAGAAATAGAAATCTCCCTAGATT
* *
7356008 TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATGAAATAGTAAAACCCAAAGATTATTCAC
1 TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATGAAATAATAAAAACCAAAGATTATTCAC
7356073 CATATATAAGTCAATTTCCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCA
66 CATATATAAGTCAATTT-CCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCA
* *
7356138 TGGCTATAATTTTCAACTTAAAATAGGGAAATT-TTTTTTA-TTTTTCCCCTAAAAAAATGCTTA
130 TGGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTACTTTTTCCCCTAAAAAAATTCTTA
* * * * * *
7356201 ATTTGTTCGGACCTCCTTTTGTATTATATGTAGTTAAAAACGATTAGTATTTTATATGATTGATT
195 ATATGTACGGACCTCC-TTTGTATTATTTGTAGTTAAAAAAGATTAGTACTTTATATGATCGATT
*
7356266 TTATAGCTTCTTTTTTATTGAAAGTTGACTAATCTATTTCTAACCACACTTATCCCTATCTACAG
259 TTATAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCACACTTATCCCTATCTACAG
* * * * * *
7356331 GATCTACCTTACTTGCTTGGTTGGGGGAGGATATTATAATTGATTTAAGTTAGACT-TTTGTCAA
324 GATCTACCTGACTTGCTTGGTTAGGGAAGGATATTATAATTGATTCAAATTAGACTCTTT-CCAA
* * * * * * *
7356395 TTGATCACTAGA-TACATGTGTCGGTCCGTTGGTTTTTTTTTAGG-TTCGTTGTACGTCTAGAAT
388 TTGATCACTAGATTA-ATGTGTCGAT-CGGTAG-CTTTTTTTAGGACT-GTTGTACG-CCAAAAT
* * * * *
7356458 TTAGCTGATCATGCATAATCTCGTCCCAAGTTGATCTAAATTTAACCATTGTTAAAGTTGAAGTT
448 TAAGC---TCATCCATAGTCTTGTCCCAAGTTGATCTAAATTTAACCATTGTTAGAGTTGAAGTT
* * * *
7356523 GGCCTGCTGATTGGCTAGATTGATTGTTAATCAACCAGTATGTATTTTCTTATCTAATTTTGTTA
510 GGCCTACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTATCTAATTTTGTTA
* * *
7356588 AATTGAGAAATTAATTAATCATTGATTAATCCAAATACAAAATTTGATGTTTACAAAAATCATCG
575 AATCGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCG
* *
7356653 ACCAAACAAAATCTTAATAATTAGTTCCACTATATTAAAATTACTAGTACTTTGACTAAGCTTTT
640 ACCAAACAAAATCTTAATAATTAATTCCACTAGATTAAAATTACTAGTACTTTGACTAAGCTTTT
* *
7356718 CTCATAAAAAAAATTATAATTATTTAATACCATTCCACGA-AGCATAAATAATGACATATTCCAA
705 CTCAT-AAAAAAATTATAATTATTTAATACCATTCCATGATA-CATAAATGATGACATATTCCAA
*
7356782 TT-AAAAATAAA-AGAAATCTCCCTAGATT
768 TTAAAAAAGAAATAGAAATCTCCCTAGATT
* * * * *
7356810 TTGGCTTTAGACTCCCTCAAATCATGTCGTAAAAAATGAAATAATAAGAACCAAAGATTATTAAA
1 TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATGAAATAATAAAAACCAAAGATTATTCAC
* *
7356875 CTTATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCGTTTACATATGTATTAGGGCAT
66 CATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCAT
* *
7356940 GGCTATAATTTCTCAACTTAAAATAGGGAAATTGTTATTTA-TTTTTGCCCCTAAAAACA-TCTT
131 GGCTATAATTT-TCAACTTAAAATAGGGAAATTCTTATTTACTTTTT-CCCCTAAAAAAATTCTT
* * * * * *
7357003 ACTATGTATGGTCTTTCTTTGTATTAATTGTAG
194 AATATGTACGGACCTCCTTTGTATTATTTGTAG
7357036 ATTATTACTT
Statistics
Matches: 2270, Mismatches: 303, Indels: 125
0.84 0.11 0.05
Matches are distributed among these distances:
791 29 0.01
792 43 0.02
793 94 0.04
794 14 0.01
795 337 0.15
796 114 0.05
797 129 0.06
798 28 0.01
800 1 0.00
801 352 0.16
802 224 0.10
803 152 0.07
804 63 0.03
806 62 0.03
807 2 0.00
808 4 0.00
809 23 0.01
810 172 0.08
811 96 0.04
812 260 0.11
813 69 0.03
814 2 0.00
ACGTcount: A:0.34, C:0.15, G:0.13, T:0.38
Consensus pattern (797 bp):
TTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATGAAATAATAAAAACCAAAGATTATTCAC
CATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACATATGTATTAGGGCAT
GGCTATAATTTTCAACTTAAAATAGGGAAATTCTTATTTACTTTTTCCCCTAAAAAAATTCTTAA
TATGTACGGACCTCCTTTGTATTATTTGTAGTTAAAAAAGATTAGTACTTTATATGATCGATTTT
ATAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCACACTTATCCCTATCTACAGGA
TCTACCTGACTTGCTTGGTTAGGGAAGGATATTATAATTGATTCAAATTAGACTCTTTCCAATTG
ATCACTAGATTAATGTGTCGATCGGTAGCTTTTTTTAGGACTGTTGTACGCCAAAATTAAGCTCA
TCCATAGTCTTGTCCCAAGTTGATCTAAATTTAACCATTGTTAGAGTTGAAGTTGGCCTACTGAT
TGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTATCTAATTTTGTTAAATCGAGAAAT
TAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCGACCAAACAAAA
TCTTAATAATTAATTCCACTAGATTAAAATTACTAGTACTTTGACTAAGCTTTTCTCATAAAAAA
ATTATAATTATTTAATACCATTCCATGATACATAAATGATGACATATTCCAATTAAAAAAGAAAT
AGAAATCTCCCTAGATT
Found at i:7359717 original size:8 final size:8
Alignment explanation
Indices: 7359704--7359734 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
7359694 TCTGTATGTT
7359704 TTTTTTTC
1 TTTTTTTC
*
7359712 TTTTTTCC
1 TTTTTTTC
7359720 TTTTTTTC
1 TTTTTTTC
7359728 TTTTTTT
1 TTTTTTT
7359735 TTATATCTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTTTTC
Found at i:7359799 original size:3 final size:3
Alignment explanation
Indices: 7359786--7359827 Score: 59
Period size: 3 Copynumber: 13.7 Consensus size: 3
7359776 ATGTATATAG
7359786 TTA TATA TTA TTA -TA TTA TTA TTA TTA TTA TTTA TTA TTA TT
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TT
7359828 TTTTTTAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
2 2 0.06
3 28 0.78
4 6 0.17
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7360267 original size:25 final size:25
Alignment explanation
Indices: 7360238--7360291 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
7360228 CTGGGAGTGA
7360238 GAAAAAATTTT-TAGAAATTTTTGG
1 GAAAAAATTTTCTAGAAATTTTTGG
* *
7360262 CGAAAAATTTTTCTGGAAATTTTTGG
1 -GAAAAAATTTTCTAGAAATTTTTGG
7360288 GAAA
1 GAAA
7360292 TTTCCAGATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.39, C:0.04, G:0.19, T:0.39
Consensus pattern (25 bp):
GAAAAAATTTTCTAGAAATTTTTGG
Found at i:7360335 original size:31 final size:31
Alignment explanation
Indices: 7360300--7360367 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
7360290 AATTTCCAGA
* *
7360300 TTCCGGCGAA-AATTTCGACGAA-ATTTGAATT
1 TTCCGGC-AACAATTCCGACGAACA-TTGAAGT
*
7360331 TTCCGGCAACAATTCCGGCGAACATTGAAGT
1 TTCCGGCAACAATTCCGACGAACATTGAAGT
7360362 TTCCGG
1 TTCCGG
7360368 TGACCTGCCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 2 0.06
31 29 0.91
32 1 0.03
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (31 bp):
TTCCGGCAACAATTCCGACGAACATTGAAGT
Found at i:7360521 original size:18 final size:18
Alignment explanation
Indices: 7360494--7360531 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
7360484 ATTTTAGAGA
7360494 GAAGAGAGAG-GAAAAGG
1 GAAGAGAGAGAGAAAAGG
*
7360511 GAAGAAGAGAGAGAAAGGG
1 GAAG-AGAGAGAGAAAAGG
7360530 GA
1 GA
7360532 GGAGCGTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 6 0.33
19 8 0.44
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (18 bp):
GAAGAGAGAGAGAAAAGG
Found at i:7360873 original size:5 final size:5
Alignment explanation
Indices: 7360856--7360921 Score: 50
Period size: 5 Copynumber: 13.4 Consensus size: 5
7360846 TTTAACATTC
* *
7360856 TTTTA TCTTTA TTTTA TTTTTA TTTT- GTTT- TTTTA TTTTA -TTT- TTTCA
1 TTTTA T-TTTA TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
*
7360904 CTTTA TTTTTA TTTTA TT
1 TTTTA -TTTTA TTTTA TT
7360922 ATTCTATTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
4 11 0.22
5 24 0.49
6 14 0.29
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:7360886 original size:11 final size:11
Alignment explanation
Indices: 7360856--7360931 Score: 71
Period size: 11 Copynumber: 6.4 Consensus size: 11
7360846 TTTAACATTC
*
7360856 TTTTATCTTTA
1 TTTTATTTTTA
7360867 TTTTATTTTTA
1 TTTTATTTTTA
*
7360878 TTTTGTTTTTTTA
1 -TTT-TATTTTTA
7360891 TTTTATTTTTTCA
1 TTTTA-TTTTT-A
*
7360904 CTTTATTTTTA
1 TTTTATTTTTA
7360915 TTTTATTATTCTA
1 TTTTATT-TT-TA
7360928 TTTT
1 TTTT
7360932 CTTTAAATAA
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
11 18 0.33
12 18 0.33
13 18 0.33
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.78
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:7360890 original size:13 final size:13
Alignment explanation
Indices: 7360863--7360931 Score: 65
Period size: 13 Copynumber: 5.6 Consensus size: 13
7360853 TTCTTTTATC
7360863 TTTATTTTA--TT
1 TTTATTTTATTTT
*
7360874 TTTATTTTGTTTT
1 TTTATTTTATTTT
7360887 TTTATTTTATTTT
1 TTTATTTTATTTT
* *
7360900 TTCACTTTA--TT
1 TTTATTTTATTTT
*
7360911 TTTATTTTATTAT
1 TTTATTTTATTTT
*
7360924 TCTATTTT
1 TTTATTTT
7360932 CTTTAAATAA
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
11 17 0.37
13 29 0.63
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.78
Consensus pattern (13 bp):
TTTATTTTATTTT
Found at i:7360891 original size:19 final size:19
Alignment explanation
Indices: 7360866--7360931 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
7360856 TTTTATCTTT
7360866 ATTTTATTTTTATTTTGTT-
1 ATTTTATTTTTATTTT-TTC
*
7360885 TTTTTA-TTTTATTTTTTC
1 ATTTTATTTTTATTTTTTC
*
7360903 ACTTTATTTTTATTTTATT-
1 ATTTTATTTTTATTTT-TTC
*
7360922 ATTCTATTTT
1 ATTTTATTTT
7360932 CTTTAAATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
17 2 0.05
18 13 0.33
19 22 0.56
20 2 0.05
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.77
Consensus pattern (19 bp):
ATTTTATTTTTATTTTTTC
Found at i:7360996 original size:27 final size:27
Alignment explanation
Indices: 7360966--7361053 Score: 63
Period size: 27 Copynumber: 3.2 Consensus size: 27
7360956 CAAAAAAAAT
7360966 ATTTTTGGGGAAAAGTTGAAAGTATCA
1 ATTTTTGGGGAAAAGTTGAAAGTATCA
* ** * * **
7360993 ATTTCCTTAGAAATAAATTTTCAAAAAAT-A
1 ATTT--TTGGGGA-AAA-GTTGAAAGTATCA
7361023 -TTTTTGGGGAAAAGTTGAAAGTATCA
1 ATTTTTGGGGAAAAGTTGAAAGTATCA
7361049 ATTTT
1 ATTTT
7361054 CCTTAAAAAT
Statistics
Matches: 41, Mismatches: 14, Indels: 12
0.61 0.21 0.18
Matches are distributed among these distances:
25 7 0.17
26 4 0.10
27 12 0.29
29 7 0.17
30 4 0.10
31 7 0.17
ACGTcount: A:0.40, C:0.06, G:0.17, T:0.38
Consensus pattern (27 bp):
ATTTTTGGGGAAAAGTTGAAAGTATCA
Found at i:7361018 original size:58 final size:58
Alignment explanation
Indices: 7360948--7361651 Score: 773
Period size: 58 Copynumber: 11.9 Consensus size: 58
7360938 ATAAAAATCA
7360948 AAAATTTCCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCTTAGAAAT
1 AAAATTT-C-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
* *
7361007 AAATTTTC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
*** *
7361064 AAAATTTCAAAAAAAGGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTA-AAGAT
1 AAAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAA-AT
* *
7361122 CAAAATTTCCAAAAAAAATTATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTT-GAAAAT
1 -AAAATTT-C-AAAAAAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT
* * * *
7361184 CGAAATTTCCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT
1 -AAAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
*** *
7361243 AAAATTTCAAAAAAAGGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAAT
1 AAAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT
* * * *
7361301 CAAAGTTTC-AAAAAATATTTTTTGGGAAAAATTGAAAGTATCAATTTTCCTTAAAAAT
1 -AAAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
* * *
7361359 AAAATTTCAAAAAAGGATTTTTTCTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAAATTTCAAAAAA--A-----TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
* * *
7361424 CAAAATTTCAAAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC-TCGAAATT
1 -AAAATTTCAAAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAA-T
* * *
7361485 AAAGTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AAT
1 AAAATTTC-AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
* * *
7361541 AAATTTTCAAAAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC-TCGAAATT
1 AAAATTTC-AAAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAA-T
* **
7361602 AAAGTTTCAAAAAAATATTTTCAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
7361652 CTGTACAAGA
Statistics
Matches: 555, Mismatches: 57, Indels: 67
0.82 0.08 0.10
Matches are distributed among these distances:
56 51 0.09
57 31 0.06
58 201 0.36
59 90 0.16
60 29 0.05
61 57 0.10
62 40 0.07
63 2 0.00
64 1 0.00
65 39 0.07
66 14 0.03
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (58 bp):
AAAATTTCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT
Found at i:7361568 original size:301 final size:294
Alignment explanation
Indices: 7360949--7361651 Score: 962
Period size: 301 Copynumber: 2.4 Consensus size: 294
7360939 TAAAAATCAA
* * *
7360949 AAATTTCCAAAAAAAAT-ATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCTT-AGAAATAAAT
1 AAATTTTCAAAAAAAATAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATAAAG
*
7361011 TTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
65 TTTCAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
*
7361076 AAAGGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAGATCAAAATTTCCAAAAAAAAT
130 AAAGGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAAAAT
* * *
7361141 TATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAATTTCCAAAAAATATTTT
195 AATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCGAAAGTTCCAAAAAATATTTT
* *
7361206 TGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAAT
260 TAGGGAAAAGTTGAAAGTATCAATTTTCCTT--AAAT
* ***
7361243 AAAATTTC-AAAAAAA-GGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAG
1 AAATTTTCAAAAAAAATAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAG
* *
7361306 TTTCAAAAAATATTTTTTGGGAAAAATTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC-AAA
65 TTTCAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
*
7361370 AAAGGATTTTTTCTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTT-C-
130 AAAGG--------GTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCA
* *
7361433 AAAAAAATAAATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTTCTCG-AAAT-TAAAGTTCCAA
187 AAAAAAAT-AATTTTT-AGGAAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCGAAAGTTCC--
7361495 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAT
248 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAT
* *
7361541 AAATTTTCAAAAAAAATAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAG
1 AAATTTTCAAAAAAAAT-AATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAG
*
7361606 TTTCAAAAAAATATTTTCAGGGAAAAGTTGAAAGTATCAATTTTCC
65 TTTC-AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
7361652 CTGTACAAGA
Statistics
Matches: 363, Mismatches: 26, Indels: 33
0.86 0.06 0.08
Matches are distributed among these distances:
293 32 0.09
294 25 0.07
295 63 0.17
298 10 0.03
299 14 0.04
300 20 0.06
301 149 0.41
302 50 0.14
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (294 bp):
AAATTTTCAAAAAAAATAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGT
TTCAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAA
AAGGGTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTTCCAAAAAAAATA
ATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCGAAAGTTCCAAAAAATATTTTT
AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAT
Found at i:7372632 original size:49 final size:50
Alignment explanation
Indices: 7372304--7373035 Score: 671
Period size: 49 Copynumber: 14.9 Consensus size: 50
7372294 AATGAAAATT
* * * * **
7372304 TTTTTAAAGTTGTTGAGCCTCTGTTGAAAGGAGCTTTTTTTAAGA--ATT
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
* *
7372352 TTTTTAAAGTTGTTAAGCCTCTGCTGAGA-GAAGCCTTTTTCAAGATGAGA
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATG-AGCTTTTTTCAAGATGAGA
* * *
7372402 TTTTTAAAGTTGTTGAGCTTTTGCCGAGATGAGCTTTTTTTTCAAGATGAGA
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGC--TTTTTTCAAGATGAGA
* * * * *
7372454 TTTTTAAAGTTGTTGGGCTTTTACTGAAATGAGCTTTTTTCAAGATGAGA
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
* ** *
7372504 TTTTTTTAAAGTTGTTAAGCCTCTATTGAGAAGAGC-TTTTTCAAGAT-A-A
1 --TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
* * * * * *
7372553 ATTTTAAAGTTATTGTGTCTCTGCTTAGATGAGCTTTTTTC-ATATGAGA
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
* * *
7372602 TTTTTCAAGTTGTTGAGCCTTTGCTAAGATGAGCTTTTTTCAAGATGAGA
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
* * * *
7372652 TTTTTTTAAAGTTATTGAGCCCCTGCTGAGAAGAGC-TTCTTCAAGAT-A-A
1 --TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
* * *
7372701 ATTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAGCTTGTTT-AAGAT-A-A
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
* * * * * * * * *
7372748 ATTTTAAAGTTATTGTGCCTTTACTTAGAGGAACCTTTTTC-AGATGAGA
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
* *
7372797 TTTTTAAAGTTGTTGAGCCTCTGCTAAGATGAGC-TTTTTCAAGAT-AAA
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
* * ** * *
7372845 ATTTTAAAGTTGTTAAGCCTCTGCTGAGAAAAGCTTTTTT-TATATGAGA
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
* *
7372894 -TTTTAAAGTTGTTGAGCCTATGCTAAGA-GAAGCTTTTTTCAAGATG-GA
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATG-AGCTTTTTTCAAGATGAGA
* * * * *
7372942 TTTTTAAAGTGGTTGAGCCTTTGTTGAGAGGAGCTTTTTTCAAGAT-AAA
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
* * *
7372991 ATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGC-TTTTTCAAGAT
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGAT
7373036 AAAATTTTAA
Statistics
Matches: 565, Mismatches: 93, Indels: 52
0.80 0.13 0.07
Matches are distributed among these distances:
47 102 0.18
48 136 0.24
49 150 0.27
50 55 0.10
51 22 0.04
52 100 0.18
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (50 bp):
TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTTCAAGATGAGA
Found at i:7372634 original size:148 final size:149
Alignment explanation
Indices: 7372304--7373029 Score: 786
Period size: 148 Copynumber: 4.9 Consensus size: 149
7372294 AATGAAAATT
* * *
7372304 TTTTTAAAGTTGTTGAGCCTCTGTTGAA-AGGAGCTTTTTT-TA-A-GA-ATTTTTTTAAAGTTG
1 TTTTTAAAGTTGTTGAGCCTTTGCT-AAGAGGAGCTTTTTTCAAGATGAGATTTTTTTAAAGTTG
* * * * * *
7372364 TTAAGCCTCTGCTGAG-AGAAGCCTTTTTCAAGATGAGATTTTTAAAGTTGTTGAGCTTTTGCCG
65 TTGAGCCTCTGCTGAGAAG-AG-CTTTTTCAAGAT-AAAATTTTAAAGTTGTTGAGCCTCTGCTG
*
7372428 AGATGAGCTTTTTTTTCAAGATGAGA
127 AGAAGAGC--TTTTTTC-AGATGAGA
* * * *
7372454 TTTTTAAAGTTGTTGGGCTTTTACTGAA-ATGAGCTTTTTTCAAGATGAGATTTTTTTAAAGTTG
1 TTTTTAAAGTTGTTGAGCCTTTGCT-AAGAGGAGCTTTTTTCAAGATGAGATTTTTTTAAAGTTG
* ** * * * *
7372518 TTAAGCCTCTATTGAGAAGAGCTTTTTCAAGAT-AAATTTTAAAGTTATTGTGTCTCTGCTTAGA
65 TTGAGCCTCTGCTGAGAAGAGCTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTGAGA
* *
7372582 TGAGCTTTTTTCATATGAGA
130 AGAGCTTTTTTCAGATGAGA
* * *
7372602 TTTTTCAAGTTGTTGAGCCTTTGCTAAGATGAGCTTTTTTCAAGATGAGATTTTTTTAAAGTTAT
1 TTTTTAAAGTTGTTGAGCCTTTGCTAAGAGGAGCTTTTTTCAAGATGAGATTTTTTTAAAGTTGT
* *
7372667 TGAGCCCCTGCTGAGAAGAGCTTCTTCAAGAT-AAATTTTAAAGTTGTTGAGCCTCTGCTGAGAA
66 TGAGCCTCTGCTGAGAAGAGCTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAA
* *
7372731 GAGCTTGTTTAAGAT-A-A
131 GAGCTTTTTTCAGATGAGA
* * * * * * *
7372748 ATTTTAAAGTTATTGTGCCTTTACTTAGAGGAACCTTTTTC-AGATGAGA--TTTTTAAAGTTGT
1 TTTTTAAAGTTGTTGAGCCTTTGCTAAGAGGAGCTTTTTTCAAGATGAGATTTTTTTAAAGTTGT
* * *
7372810 TGAGCCTCTGCTAAGATGAGCTTTTTCAAGATAAAATTTTAAAGTTGTTAAGCCTCTGCTGAGAA
66 TGAGCCTCTGCTGAGAAGAGCTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAA
* * *
7372875 AAGCTTTTTTTATATGAGA
131 GAGCTTTTTTCAGATGAGA
* * *
7372894 -TTTTAAAGTTGTTGAGCCTATGCTAAGAGAAGCTTTTTTCAAGATG-GA--TTTTTAAAGTGGT
1 TTTTTAAAGTTGTTGAGCCTTTGCTAAGAGGAGCTTTTTTCAAGATGAGATTTTTTTAAAGTTGT
* * * *
7372955 TGAGCCTTTGTTGAGAGGAGCTTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGTTGAGA
66 TGAGCCTCTGCTGAGAAGAGC-TTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTGAGA
*
7373020 GGAGCTTTTT
130 AGAGCTTTTT
7373030 CAAGATAAAA
Statistics
Matches: 492, Mismatches: 73, Indels: 26
0.83 0.12 0.04
Matches are distributed among these distances:
143 40 0.08
144 42 0.09
145 72 0.15
146 88 0.18
147 3 0.01
148 130 0.26
149 7 0.01
150 34 0.07
151 28 0.06
152 1 0.00
153 14 0.03
154 31 0.06
155 2 0.00
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.41
Consensus pattern (149 bp):
TTTTTAAAGTTGTTGAGCCTTTGCTAAGAGGAGCTTTTTTCAAGATGAGATTTTTTTAAAGTTGT
TGAGCCTCTGCTGAGAAGAGCTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAA
GAGCTTTTTTCAGATGAGA
Found at i:7372637 original size:96 final size:97
Alignment explanation
Indices: 7372304--7373047 Score: 641
Period size: 97 Copynumber: 7.6 Consensus size: 97
7372294 AATGAAAATT
* * * * ** * *
7372304 TTTTTAAAGTTGTTGAGCCTCTGTTGAAAGGAGCTTTTTTTAAGA--ATTTTTTTAAAGTTGTTA
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGC-TTTTTCAAGATGA-AATTTTAAAGTTATTG
*
7372367 AGCCTCTGCTGAG-AGAAGCCTTTTTCAAGATGAGA
64 AGCCTCTGCTGAGAAG-AGCTTTTTTC-AGATGAGA
* * * * *
7372402 TTTTTAAAGTTGTTGAGCTTTTGCCGAGATGAGCTTTTTTTTCAAGATGAGATTTTTAAAGTTGT
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGC---TTTTTCAAGATGA-AATTTTAAAGTTAT
* * * *
7372467 TGGGCTTTTACTGA-AATGAGCTTTTTTCAAGATGAGA
62 TGAGCCTCTGCTGAGAA-GAGCTTTTTTC-AGATGAGA
* ** *
7372504 TTTTTTTAAAGTTGTTAAGCCTCTATTGAGAAGAGCTTTTTCAAGAT-AAATTTTAAAGTTATTG
1 --TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTCAAGATGAAATTTTAAAGTTATTG
* * * * *
7372568 TGTCTCTGCTTAGATGAGCTTTTTTCATATGAGA
64 AGCCTCTGCTGAGAAGAGCTTTTTTCAGATGAGA
* * * *
7372602 TTTTTCAAGTTGTTGAGCCTTTGCTAAGATGAGCTTTTTTCAAGATGAGATTTTTTTAAAGTTAT
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGC-TTTTTCAAGATGA-A--ATTTTAAAGTTAT
* *
7372667 TGAGCCCCTGCTGAGAAGAGC-TTCTTCAAGAT-A-A
62 TGAGCCTCTGCTGAGAAGAGCTTTTTTC-AGATGAGA
* * *
7372701 ATTTTAAAGTTGTTGAGCCTCTGCTGAGAAGAGCTTGTTT-AAGAT-AAATTTTAAAGTTATTGT
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTT-TTTCAAGATGAAATTTTAAAGTTATTGA
* * * * * *
7372764 GCCTTTACTTAGAGGAACCTTTTTCAGATGAGA
65 GCCTCTGCTGAGAAGAGCTTTTTTCAGATGAGA
* * * *
7372797 TTTTTAAAGTTGTTGAGCCTCTGCTAAGATGAGCTTTTTCAAGATAAAATTTTAAAGTTGTTAAG
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTCAAGATGAAATTTTAAAGTTATTGAG
* * *
7372862 CCTCTGCTGAGAAAAGCTTTTTTTATATGAGA
66 CCTCTGCTGAGAAGAGCTTTTTTCAGATGAGA
* * * * **
7372894 -TTTTAAAGTTGTTGAGCCTATGCTAAGA-GAAGCTTTTTTCAAGATGGATTTTTAAAGTGGTTG
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATG-AGC-TTTTTCAAGATGAAATTTTAAAGTTATTG
* * * *
7372957 AGCCTTTGTTGAGAGGAGCTTTTTTCAAGAT-AAA
64 AGCCTCTGCTGAGAAGAGCTTTTTTC-AGATGAGA
* * * *
7372991 ATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGAGCTTTTTCAAGATAAAATTTTAAAG
1 TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTCAAGATGAAATTTTAAAG
7373048 CTTTTTCAAG
Statistics
Matches: 525, Mismatches: 95, Indels: 53
0.78 0.14 0.08
Matches are distributed among these distances:
94 30 0.06
95 10 0.02
96 97 0.18
97 118 0.22
98 74 0.14
99 66 0.13
100 18 0.03
101 42 0.08
102 42 0.08
103 1 0.00
104 27 0.05
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.41
Consensus pattern (97 bp):
TTTTTAAAGTTGTTGAGCCTCTGCTGAGATGAGCTTTTTCAAGATGAAATTTTAAAGTTATTGAG
CCTCTGCTGAGAAGAGCTTTTTTCAGATGAGA
Found at i:7372646 original size:16 final size:16
Alignment explanation
Indices: 7372627--7372657 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7372617 AGCCTTTGCT
*
7372627 AAGATGAGCTTTTTTC
1 AAGATGAGATTTTTTC
7372643 AAGATGAGATTTTTT
1 AAGATGAGATTTTTT
7372658 TAAAGTTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.45
Consensus pattern (16 bp):
AAGATGAGATTTTTTC
Found at i:7373054 original size:24 final size:24
Alignment explanation
Indices: 7373022--7373071 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
7373012 TGTTGAGAGG
7373022 AGCTTTTTCAAGATAAAATTTTAA
1 AGCTTTTTCAAGATAAAATTTTAA
7373046 AGCTTTTTCAAGATAAAATTTTAA
1 AGCTTTTTCAAGATAAAATTTTAA
7373070 AG
1 AG
7373072 TTGTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (24 bp):
AGCTTTTTCAAGATAAAATTTTAA
Found at i:7373144 original size:51 final size:49
Alignment explanation
Indices: 7373048--7373178 Score: 142
Period size: 51 Copynumber: 2.7 Consensus size: 49
7373038 AATTTTAAAG
* *
7373048 CTTTTTCAAGAT-AAAATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAAAT
1 CTTTTT-AAGATGAAAATTTTAAAGTTGTTGAGCCTCTACTAAGAGG-AAC
* * * * *
7373098 CTTTTTAAGATGAGAATTTTTAAAGTTGTTGAGCCTTTATTGAGAGGAGC
1 CTTTTTAAGATGA-AAATTTTAAAGTTGTTGAGCCTCTACTAAGAGGAAC
*
7373148 CTTTTT--CATGAAAATTTTAAAGTTGTTGAGC
1 CTTTTTAAGATGAAAATTTTAAAGTTGTTGAGC
7373179 TTTTGCCGAG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
47 19 0.27
48 4 0.06
49 5 0.07
50 14 0.20
51 28 0.40
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (49 bp):
CTTTTTAAGATGAAAATTTTAAAGTTGTTGAGCCTCTACTAAGAGGAAC
Found at i:7373164 original size:170 final size:170
Alignment explanation
Indices: 7372893--7373202 Score: 457
Period size: 170 Copynumber: 1.8 Consensus size: 170
7372883 TTTATATGAG
7372893 ATTTTAAAGTTGTTGAGCCTATGCTAAGAGAAGCTTTTTTCAAGATGGATTTTTAAAGTGGTTGA
1 ATTTTAAAGTTGTTGAGCCTATGCTAAGAGAAGCTTTTTTCAAGATGGATTTTTAAAGTGGTTGA
* * **
7372958 GCCTTTGTTGAGAGGAGCTTTTTTCAAGATAAAATTTTAAAGTTGTTGAGCCTCTGTTGAGAGGA
66 GCCTTTATTGAGAGGAGCCTTTTTCAAGA-AAAATTTTAAAGTTGTTGAGCCTCTGCCGAGAGGA
7373023 G-CTTTTTCAAGATAAAATTTTAAAGCTTTTTCAAGATAAA
130 GCCTTTTTCAAGATAAAATTTTAAAGCTTTTTCAAGATAAA
* * *
7373063 ATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAA-ATCTTTTT-AAGATGAGAATTTTTAAAGTTG
1 ATTTTAAAGTTGTTGAGCCTATGCTAAGA-GAAGCT-TTTTTCAAGATG-G-ATTTTTAAAGTGG
* * *
7373126 TTGAGCCTTTATTGAGAGGAGCCTTTTTCATG-AAAATTTTAAAGTTGTTGAGCTTTTGCCGAGA
62 TTGAGCCTTTATTGAGAGGAGCCTTTTTCAAGAAAAATTTTAAAGTTGTTGAGCCTCTGCCGAGA
7373190 GGAGCCTTTTTCA
127 GGAGCCTTTTTCA
7373203 GATTTTAAAT
Statistics
Matches: 125, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
170 67 0.54
171 17 0.14
172 41 0.33
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (170 bp):
ATTTTAAAGTTGTTGAGCCTATGCTAAGAGAAGCTTTTTTCAAGATGGATTTTTAAAGTGGTTGA
GCCTTTATTGAGAGGAGCCTTTTTCAAGAAAAATTTTAAAGTTGTTGAGCCTCTGCCGAGAGGAG
CCTTTTTCAAGATAAAATTTTAAAGCTTTTTCAAGATAAA
Found at i:7373190 original size:47 final size:47
Alignment explanation
Indices: 7373060--7373202 Score: 160
Period size: 47 Copynumber: 3.0 Consensus size: 47
7373050 TTTTCAAGAT
* * ** *
7373060 AAAATTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAAATCTTTTTAAGATG
1 AAAATTTTAAAGTTGTTGAGCCTTTGCTGAGAGG-AGCCTTTTT--CATG
* **
7373110 AGAATTTTTAAAGTTGTTGAGCCTTTATTGAGAGGAGCCTTTTTCATG
1 A-AAATTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCCTTTTTCATG
* *
7373158 AAAATTTTAAAGTTGTTGAGCTTTTGCCGAGAGGAGCCTTTTTCA
1 AAAATTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCCTTTTTCA
7373203 GATTTTAAAT
Statistics
Matches: 79, Mismatches: 13, Indels: 5
0.81 0.13 0.05
Matches are distributed among these distances:
47 39 0.49
48 4 0.05
50 8 0.10
51 28 0.35
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (47 bp):
AAAATTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCCTTTTTCATG
Found at i:7373245 original size:52 final size:47
Alignment explanation
Indices: 7373060--7373252 Score: 149
Period size: 47 Copynumber: 3.9 Consensus size: 47
7373050 TTTTCAAGAT
* * ** *
7373060 AAAATTTTAAAGTTGTTGAGCCTCT-GCTAAGAGGAAATCTTTTTAAGATG
1 AAAATTTTAAAGTTGTTGAGCCTTTAG-TGAGAGG-AGCCTTTTT--CATG
* *
7373110 AGAATTTTTAAAGTTGTTGAGCCTTTATTGAGAGGAGCCTTTTTCATG
1 A-AAATTTTAAAGTTGTTGAGCCTTTAGTGAGAGGAGCCTTTTTCATG
* *
7373158 AAAATTTTAAAGTTGTTGAG-CTTTTGCCGAGAGGAGCCTTTTTCA-G
1 AAAATTTTAAAGTTGTTGAGCCTTTAG-TGAGAGGAGCCTTTTTCATG
* * *
7373204 ATTTTAAATTTTCAAAAGTTGTCGAGCCTTAAGTGAGAGGAGCATTTTT
1 A----AAATTTT--AAAGTTGTTGAGCCTTTAGTGAGAGGAGCCTTTTT
7373253 GATTTGATGA
Statistics
Matches: 117, Mismatches: 16, Indels: 18
0.77 0.11 0.12
Matches are distributed among these distances:
46 6 0.05
47 35 0.30
48 4 0.03
50 15 0.13
51 28 0.24
52 25 0.21
53 4 0.03
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (47 bp):
AAAATTTTAAAGTTGTTGAGCCTTTAGTGAGAGGAGCCTTTTTCATG
Found at i:7373602 original size:10 final size:10
Alignment explanation
Indices: 7373589--7373613 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7373579 CAAAAATATA
7373589 AAAAAAAGAG
1 AAAAAAAGAG
7373599 AAAAAAAGAG
1 AAAAAAAGAG
7373609 AAAAA
1 AAAAA
7373614 TACAAAATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:7373643 original size:15 final size:15
Alignment explanation
Indices: 7373609--7373642 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
7373599 AAAAAAAGAG
7373609 AAAAATACAAAATAC
1 AAAAATACAAAATAC
*
7373624 AAAAATGCAAAA-AC
1 AAAAATACAAAATAC
7373638 AAAAA
1 AAAAA
7373643 ACGGGGGCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.76, C:0.12, G:0.03, T:0.09
Consensus pattern (15 bp):
AAAAATACAAAATAC
Found at i:7373706 original size:16 final size:16
Alignment explanation
Indices: 7373693--7373723 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7373683 GCCACCCACT
7373693 CCTCTGATCACCCATC
1 CCTCTGATCACCCATC
*
7373709 CCTCTGGTCACCCAT
1 CCTCTGATCACCCAT
7373724 ACCTTGCAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.48, G:0.10, T:0.26
Consensus pattern (16 bp):
CCTCTGATCACCCATC
Found at i:7374813 original size:19 final size:21
Alignment explanation
Indices: 7374780--7374823 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
7374770 TGATAATTTT
7374780 AAAATAAATTATAAA-AATA-
1 AAAATAAATTATAAATAATAC
7374799 AAAATAAACTT-TAAATAATAC
1 AAAATAAA-TTATAAATAATAC
7374820 AAAA
1 AAAA
7374824 ATTAAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 12 0.55
20 6 0.27
21 4 0.18
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATAAATTATAAATAATAC
Found at i:7379594 original size:800 final size:790
Alignment explanation
Indices: 7375883--7379933 Score: 4028
Period size: 800 Copynumber: 5.1 Consensus size: 790
7375873 CCCACTAAAG
* **
7375883 ATGGCTA-AATTTTCAACTTAAAATAAGGAAATTGTTATTTATTTTTGCCCCTTGAAAAATTCTT
1 ATGGCTATAATTTTCAACTTAAAATAGGGAAATTGTTATTTATTTTTGCCCCTAAAAAAATTCTT
* * * * * *
7375947 AATATGGACAGCCCTCCTTTGTATTATTTGTAATTAAAAAAGATTAGTACTTTATATTATCCATT
66 AATATGCACGGACCTCCTTTGTATTATTTGTAGTTAAAAAAGATTAGTA-TTTATATGATCGATT
* * * ** * *
7376012 TTGTAACTTCTTAGTTTATTTAAAGTTGACTAATCTATTTTTAACCGGTCTTATTCCTATCTATA
130 TTGTAGCTTCTT-TTTTATTTAAAGTTGACTAATCTATTTCTAACCGCACTTATCCCTATCTACA
* * * * * *
7376077 GGTTCTACCTGACTTGCTTGACTGGAGAAGGGTATTGTAACTGATTCAAATTAGATTCTTTCCAA
194 GGATCTACCTGACTTGCTTGGCTGGGGAAGGATATTATAACTGATTCAAATTAGACT-TTTCCAA
** * * * * * *
7376142 TTGATCACTATATGCATGCGTCGATCAGTAGCTTTTTTTGAGACTGTTGTAGGGCCAAAATTAAA
258 TTGATCACTGGATGCATGTGTCGATC-GTAGGTTTTTTTGAGGCTGTTGTACGCCCAAAATTAAG
* * * * *
7376207 CTCATCCGTAGT-TAGTCTCAAGTTGACCTAAATTTAACAATTGTT-AAGTTGAAGTTAGCCTAC
322 CTCATCCATAGTCTTGTCCCAAGTTGACCTAAATTTAACCATTGTTAAAGTTGAAGTTGGCCTAC
** * * * *
7376270 TGA--AACTAGAGAGATTGTTGATCAGACCAGCATATTAGTTCTCTTTGTCTAATTTTGTCAAAT
387 TGATTGGCTAGAGTGATTGTTGATCA-ACCAGCAT-GTA-TTTTC-TTGTCTAATTTTGTTAAAT
* * * *
7376333 CGAGAAATTAATT-ATTTTTGATTAATCCAAATACAAAGTTTGAT-TTTACAGAAATCATC-AAC
448 CGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCGACC
* *
7376395 -AACAAAAATCTAA-AATTAA-TACACT-GATTAAAATTACTAAGTACTTTGACTAAGCTTTTCT
513 AAAC-AAAATCTAATAATTAATTCCACTAGATTAAAATTACT-AGTATTTTGACTAAGCTTTTCT
* * *
7376456 -GTACAAAAAATTTGCAATTATTTAATA--A-T-CATGATAAATAAATCGATG-C--ATTCCAAT
576 CATA-AAAAAA-TTGCAAATATTTAATACCATTCCATGATACATAAAT-GATGACTTATTCCAAT
* * * *
7376513 AAAAA-ACATAGAAATCTACCTAG-ATTTGCC-TT-CACT-CTTCAAATCATGT-CT-AAAAATA
638 AAAAAGAAATAGAAATCTCCCTAGAATTTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATA
** * * *
7376571 AATAATAAAACC-AAGATTATTCTGC-TATAATAATTCAAGATTTTCCTTCTTAATCGAA-AAGT
703 AATAATAAAACCAAAGATTATTCACCATAT-ATAAGTC-A-A-TTTCCTTTTTAATGGAATAAGT
* * * *
7376633 CCTTA-CATTTACGTATATATAAGCGCCC
764 CCTTATCATTTACATATGTATTAG-G-GC
* * *
7376661 ATGGCTATAATTTCTCAACCTAAATTAGGGAAATTGTTATTTATTTTTGCCCTTAAAAAAATTCT
1 ATGGCTATAATTT-TCAACTTAAAATAGGGAAATTGTTATTTATTTTTGCCCCTAAAAAAATTCT
* ** * * * * * *
7376726 TAGTATATATGG-TCTTCTTTGTATTATTTGTAGATT-------ATT-G-CTTTACATTATCGA-
65 TAATATGCACGGACCTCCTTTGTATTATTTGTAG-TTAAAAAAGATTAGTATTTATATGATCGAT
** * * * *
7376780 TTT-TA-AAT-TTTTTTATTAAAAGTTGATTAATCTATTTCTAACCGCTAC-TATCTCTATCTAT
129 TTTGTAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCGC-ACTTATCCCTATCTAC
* * * *
7376841 ATGATCTATCTGACTTGCTTGGCTGGGGAAGGATATTATAACTGGTTCAAATTAGACTTTTTCTA
193 AGGATCTACCTGACTTGCTTGGCTGGGGAAGGATATTATAACTGATTCAAATTAGAC-TTTTCCA
* * * ** *
7376906 ATTGATCACCGGATGCATGTGTCAATCGATA-GTTTTTCTTG-GGCCCGTTGTATACCCAAAATC
257 ATTGATCACTGGATGCATGTGTCGATCG-TAGGTTTTT-TTGAGG-CTGTTGTACGCCCAAAATT
* * * * *
7376969 AAGCTCATCCATAGTTTTGTCCTAAGTT-ACCTAGATTTAACCATTGCTACAGTTGAAGTTGGCC
319 AAGCTCATCCATAGTCTTGTCCCAAGTTGACCTAAATTTAACCATTGTTAAAGTTGAAGTTGGCC
* * * * *
7377033 TACTGATCGGCTAGAGTGATTGTTAATCAACCAGCATGTATTTTTTTTCTATCTAATTTTGTTGA
384 TACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTA--TTTTCT-TGTCTAATTTTGTTAA
* * **
7377098 ATCGAGAAATTAATTAATTTTTGATTAATCCAAATACAAAATTTGATGTTTAC-AAAATCAAAGA
446 ATCGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCGA
* *
7377162 CCGATAACAAAATCTTAAAAATT-ATATCCACTAGATTAAAAATTAAACTAGTCTTTTCGACTAA
511 CC-A-AACAAAATC-TAATAATTAAT-TCCACTAGATT-AAAATT--ACTAGTATTTT-GACTAA
* * * * *
7377226 GCTTTTCTCATATAATATTTGC--A-A--T--TACCATTTCCATGATAGATAAATGAATAACTTA
568 GCTTTTCTCATAAAAAAATTGCAAATATTTAATACCA-TTCCATGATACATAAATG-ATGACTTA
*
7377284 TTCCAATTCAAAAGAAATAGAAAAATTTCTCCCTAG-A-TTGCCTTTAGAC-CTCCTCAAATCAT
631 TTCCAA-TAAAAAGAAATAG--AAA--TCTCCCTAGAATTTGCCTTTAGACTC-CCTCAAATCAT
* *
7377346 GTCCCTAAGCACAAAATTAAATAATAAAAACCAATGA-TATTCACCATGCTATAAGTCAACTTTC
690 GT-CCT-A--A-AAAA-TAAATAAT-AAAACCAAAGATTATTCACCAT-ATATAAGTCAA-TTT-
* *
7377410 CCTTTTTAAATGGAAATAAGTCCTTATCATTTAACCT-TGTCTTAGGGC
745 CCTTTTT-AATGG-AATAAGTCCTTATCATTT-ACATATGTATTAGGGC
7377458 ATGGCTATAAGTTTTCAACTTAAAATAGGGAAATTGCTTATTTAATTTTTGCCCCTCAGAAATAA
1 ATGGCTATAA-TTTTCAACTTAAAATAGGGAAATTG-TTATTT-ATTTTTGCCCCT-A-AAA-AA
* * * *
7377523 ATTCTTAATATACAC-GACCTCTTTTGTGTTATTTGTAAGTTAAAAACAGATTAGTACTT-TATG
60 ATTCTTAATATGCACGGACCTCCTTTGTATTATTTGT-AGTTAAAAA-AGATTAGTATTTATATG
* * * * *
7377586 ATCGATTTTATAGCTTCTTTTTTATTTAAATTTGACTAATTTATTTCTAA-CTCATATTATCCCT
123 ATCGATTTTGTAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCGCA-CTTATCCCT
* * * * *
7377650 ATTTAGAGGATCTACTTGACTTGCTTGGCTAGGGAACGATATTATAACTGATTCAAATTAGACTC
187 ATCTACAGGATCTACCTGACTTGCTTGGCTGGGGAAGGATATTATAACTGATTCAAATTAGACT-
* * * * * *
7377715 TTTACAATTGATCAGTGGATGCATTTGTCGATTGGTA-GCTTTTTTGGGGCTTGTTGTACGCCCA
251 TTTCCAATTGATCACTGGATGCATGTGTCGA-TCGTAGGTTTTTTTGAGGC-TGTTGTACGCCCA
* * ** * *
7377779 AAATTAAGCTCATCCGTAGTCTTGTCCCAGGTTGATTTAAATTTAACCATTGTTAGAGTTGAACT
314 AAATTAAGCTCATCCATAGTCTTGTCCCAAGTTGACCTAAATTTAACCATTGTTAAAGTTGAAGT
** * * * * *
7377844 TGGTGTACTGACTGGCTAGAGTGATTATTGATCAACTAGGATGTATTTTCTTGTTTAATTTTGTT
379 TGGCCTACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTGTCTAATTTTGTT
* *
7377909 AAATTGAGAAATTAATTAATTATTGATTAATCCAAATACAAATTTTGATATTTACAAAAATCATC
444 AAATCGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATC
* * * *
7377974 GACCAAATAAAATCTTAATAATTAATTTCACCAGATTAAAATTACTAGTATTTTGACTAGGCTTT
509 GACCAAACAAAATC-TAATAATTAATTCCACTAGATTAAAATTACTAGTATTTTGACTAAGCTTT
*
7378039 TCTCATATAAAAATTTG-AAATTATTTAATA-CATTCCATGATACATAAAATGATGACTTATTCC
573 TCTCATA-AAAAAATTGCAAA-TATTTAATACCATTCCATGATACAT-AAATGATGACTTATTCC
* * * *
7378102 AATTAAAAAAGACATAGAAAGCTCCCTAGATTTTGCCTTTAGA-TCCCTCAAATGATGTCCTAAA
635 AA-T-AAAAAGAAATAGAAATCTCCCTAGAATTTGCCTTTAGACTCCCTCAAATCATGTCCT-AA
* * *
7378166 AAAATATAAAAATAAAAACCAATGATTATTCACCATATATAAGTCAATTTCCTTTTTAAAGGAAT
697 AAAATA-AATAAT-AAAACCAAAGATTATTCACCATATATAAGTCAATTTCCTTTTTAATGGAAT
*
7378231 AAGTCCTTATCATTTACATATATATTAGGGC
760 AAGTCCTTATCATTTACATATGTATTAGGGC
* * * * *
7378262 ATGGCTATAATTTTCAACTTAAAATAAGGAAATTCTTACTTACTTTTGCCCCCGCCGCCCCCCCC
1 ATGGCTATAATTTTCAACTTAAAATAGGGAAATTGTTATTTA-TTTT--------TG---CCCCT
* *
7378327 AAAAAAATTCTTAATATGCAAGGACCTCCTTTGTATTATTTGTAGTTAAAAAATATTAGTACTTT
54 AAAAAAATTCTTAATATGCACGGACCTCCTTTGTATTATTTGTAGTTAAAAAAGATTAGTA-TTT
* * * * * * ** **
7378392 GTATGATTGGTTTTATATCTGTATCTTCTTTTTTATTTAAAATTAACTAATCCCTTTCTAATTGC
118 ATATGA-TCG----AT-TTTGTAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCGC
* * * * * * *
7378457 TCTTATCCCTATCTGCAGGATCTACCTGACTTGAC-T-GTTAGCGAAAGATATTATAATTGATTC
177 ACTTATCCCTATCTACAGGATCTACCTGACTTG-CTTGGCTGGGGAAGGATATTATAACTGATTC
* * ** * ** * *
7378520 AAATTAGACTCTTTCCAATAGACCACTGGATTAATGTCTCGATCGATAGCCTTTTTTAAGCCTGT
241 AAATTAGACT-TTTCCAATTGATCACTGGATGCATGTGTCGATCG-TAGGTTTTTTTGAGGCTGT
* * * *
7378585 TGTGA-ACCCAAAATTAAGCTCATCCATAGTCTTGTCCCAGGTTGACCTCAATTGAACCATTGTT
304 TGT-ACGCCCAAAATTAAGCTCATCCATAGTCTTGTCCCAAGTTGACCTAAATTTAACCATTGTT
** * * * * * * *
7378649 AGTGTTGAGGTTAGCCTATTGATTGGCTAAAATGATTGTTGATCGACCAACATGTATTTTCTTGT
368 AAAGTTGAAGTTGGCCTACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTGT
* *
7378714 CTAATTTTGTTAAATCGATAAATTAATTAATTGTTGATTAATCCAAATACAAAATTTGATATTTA
433 CTAATTTTGTTAAATCGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTA
* *
7378779 CAAAAATCATCGACCAAATAAAATC-AATAATTAATTCCACTAGATTAAAATTACTAATATTTTG
498 CAAAAATCATCGACCAAACAAAATCTAATAATTAATTCCACTAGATTAAAATTACTAGTATTTTG
* * *
7378843 ACTAAGCTTTTCTCATAGAAAAATTGCAAATATTTAATACCATTCCAAGATACATAAATGATGAT
563 ACTAAGCTTTTCTCATAAAAAAATTGCAAATATTTAATACCATTCCATGATACATAAATGATGAC
*
7378908 TTATTCCAATCAAAAAAGAAATATAAATCTCCCTAGAATTTGCCTTTAGACTCCCTCAAATCATG
628 TTATTCCAAT--AAAAAGAAATAGAAATCTCCCTAGAATTTGCCTTTAGACTCCCTCAAATCATG
7378973 TCCTAAAAAATGAAATAATAAAACCCAAAGATTATTCACCATATATAAGTCAATTTCCCTTTTTA
691 TCCTAAAAAAT-AAATAATAAAA-CCAAAGATTATTCACCATATATAAGTCAATTT-CCTTTTTA
7379038 ATGGAATAAGTCCTTATCATTTACATATGTATTAGGGC
753 ATGGAATAAGTCCTTATCATTTACATATGTATTAGGGC
* *
7379076 ATGGCTATAATTTTCAACTTAAAATAGGGAAATT-TTTTTTATTTTT-CCCCTAAAAAAATGCTT
1 ATGGCTATAATTTTCAACTTAAAATAGGGAAATTGTTATTTATTTTTGCCCCTAAAAAAATTCTT
* * * * * * *
7379139 AATTTGTACGGACCTCATTTGTATTATATATAGTTAAAAACGATTAGTATTATATATGATTGATT
66 AATATGCACGGACCTCCTTTGTATTATTTGTAGTTAAAAAAGATTAGTATT-TATATGATCGATT
* *
7379204 TTGTAGCTTCTTTTTTATTGAAAGTTGACTAATCTATTTCTAACCACACTTATCCCTATCTACAG
130 TTGTAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCGCACTTATCCCTATCTACAG
* * * * *
7379269 GATCTACCTTACTTGCTTGGTTGGGGGAGGATATTATAATTGATTTAAATTAGACTTTTGCCAAT
195 GATCTACCTGACTTGCTTGGCTGGGGAAGGATATTATAACTGATTCAAATTAGACTTTT-CCAAT
* * * * * * *
7379334 TGATCACTAGATACATGTGTCGGTCCGTAGGTTATTTTTTAGGTTCGTTGTACGTCCAGAATTAA
259 TGATCACTGGATGCATGTGTCGAT-CGTAGGTT-TTTTTGAGGCT-GTTGTACGCCCAAAATTAA
* * *
7379399 GCTGATCATGCATAATCTTGTCCCAAGTTGATCTAAATTTAACCATTGTTAAAGTTGAAGTTGGC
321 GC---TCATCCATAGTCTTGTCCCAAGTTGACCTAAATTTAACCATTGTTAAAGTTGAAGTTGGC
* * * * * *
7379464 CTGCTGCTTGGCTAGATTGATTGTTAATCAACCAGTATGTATTTTCTTATCTAATTTTGTTAAAT
383 CTACTGATTGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTGTCTAATTTTGTTAAAT
* * *
7379529 TGAGAAATTAATTAATCATTGATTAATCCAAATACAAAATTTGATGTTTACAAAAATCATCGACC
448 CGAGAAATTAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCGACC
* * *
7379594 AAACAAAATTTAATAATTAGTTCCACTAGATTAAAATTACTAGTACTTTGACTAAGCTTTTCTCA
513 AAACAAAATCTAATAATTAATTCCACTAGATTAAAATTACTAGTATTTTGACTAAGCTTTTCTCA
** * * *
7379659 TATAAAAAATTATAATTATTTAATACCATTCCACGA-AGCATAAATAATGACTTATTCCAATTAA
578 TA-AAAAAATTGCAAATATTTAATACCATTCCATGATA-CATAAATGATGACTTATTCCAA-TAA
* * * *
7379723 AAATAAA-AGAAATCTCCCTAGATTTTGGCTTTAGACTCCCTCAAATCATGTCGTAAAAAATGAA
640 AAAGAAATAGAAATCTCCCTAGAATTTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAAT-AA
* * * *
7379787 ATAATAAGAACCAAAGATTATTAAACTTATATAAGTCAATTTCCTTTTTCATGGAATAAGTCCTT
704 ATAATAA-AACCAAAGATTATTCACCATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTT
*
7379852 ATCGTTTACATATGTATTAGGGC
768 ATCATTTACATATGTATTAGGGC
7379875 ATGGCTATAATTTCTCAACTTAAAATAGGGAAATTGTTATTTATTTTTGCCCCTAAAAA
1 ATGGCTATAATTT-TCAACTTAAAATAGGGAAATTGTTATTTATTTTTGCCCCTAAAAA
7379934 CTTCTTACTA
Statistics
Matches: 2726, Mismatches: 380, Indels: 310
0.80 0.11 0.09
Matches are distributed among these distances:
764 7 0.00
765 165 0.06
766 35 0.01
767 40 0.01
768 55 0.02
769 10 0.00
770 13 0.00
771 6 0.00
772 10 0.00
773 7 0.00
774 8 0.00
775 19 0.01
776 7 0.00
777 10 0.00
778 34 0.01
779 30 0.01
780 59 0.02
782 3 0.00
783 5 0.00
784 11 0.00
785 2 0.00
786 12 0.00
788 2 0.00
792 1 0.00
793 5 0.00
794 84 0.03
795 79 0.03
796 25 0.01
797 50 0.02
798 19 0.01
799 82 0.03
800 349 0.13
801 80 0.03
802 98 0.04
803 29 0.01
804 37 0.01
805 4 0.00
806 7 0.00
807 5 0.00
808 48 0.02
809 36 0.01
810 31 0.01
811 54 0.02
812 55 0.02
813 204 0.07
814 216 0.08
815 181 0.07
816 321 0.12
817 74 0.03
818 2 0.00
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.38
Consensus pattern (790 bp):
ATGGCTATAATTTTCAACTTAAAATAGGGAAATTGTTATTTATTTTTGCCCCTAAAAAAATTCTT
AATATGCACGGACCTCCTTTGTATTATTTGTAGTTAAAAAAGATTAGTATTTATATGATCGATTT
TGTAGCTTCTTTTTTATTTAAAGTTGACTAATCTATTTCTAACCGCACTTATCCCTATCTACAGG
ATCTACCTGACTTGCTTGGCTGGGGAAGGATATTATAACTGATTCAAATTAGACTTTTCCAATTG
ATCACTGGATGCATGTGTCGATCGTAGGTTTTTTTGAGGCTGTTGTACGCCCAAAATTAAGCTCA
TCCATAGTCTTGTCCCAAGTTGACCTAAATTTAACCATTGTTAAAGTTGAAGTTGGCCTACTGAT
TGGCTAGAGTGATTGTTGATCAACCAGCATGTATTTTCTTGTCTAATTTTGTTAAATCGAGAAAT
TAATTAATTATTGATTAATCCAAATACAAAATTTGATATTTACAAAAATCATCGACCAAACAAAA
TCTAATAATTAATTCCACTAGATTAAAATTACTAGTATTTTGACTAAGCTTTTCTCATAAAAAAA
TTGCAAATATTTAATACCATTCCATGATACATAAATGATGACTTATTCCAATAAAAAGAAATAGA
AATCTCCCTAGAATTTGCCTTTAGACTCCCTCAAATCATGTCCTAAAAAATAAATAATAAAACCA
AAGATTATTCACCATATATAAGTCAATTTCCTTTTTAATGGAATAAGTCCTTATCATTTACATAT
GTATTAGGGC
Found at i:7396206 original size:24 final size:24
Alignment explanation
Indices: 7396153--7396207 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
7396143 CACACGTGGC
* *
7396153 CCTAGTTGGCTACTGATAGGTGGT
1 CCTAGCTGGCTACTGATAGATGGT
** *
7396177 ATTAGCTGGCTACTGATATATGGT
1 CCTAGCTGGCTACTGATAGATGGT
7396201 CCTAGCT
1 CCTAGCT
7396208 CAAGTAGAAT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (24 bp):
CCTAGCTGGCTACTGATAGATGGT
Found at i:7396853 original size:30 final size:30
Alignment explanation
Indices: 7396819--7396875 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
7396809 AATGGATATC
7396819 TCTGTTTTTGGTGGGTGTCATTGTGATTAT
1 TCTGTTTTTGGTGGGTGTCATTGTGATTAT
* *
7396849 TCTGTTTTTGGTGTGTGTTATTGTGAT
1 TCTGTTTTTGGTGGGTGTCATTGTGAT
7396876 GCTGTTGTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.09, C:0.05, G:0.30, T:0.56
Consensus pattern (30 bp):
TCTGTTTTTGGTGGGTGTCATTGTGATTAT
Found at i:7402105 original size:17 final size:18
Alignment explanation
Indices: 7402072--7402115 Score: 63
Period size: 17 Copynumber: 2.5 Consensus size: 18
7402062 ACATAAAATT
*
7402072 ATGATATGATAGAATAAG
1 ATGATATTATAGAATAAG
7402090 ATGATATTAT-GAATAAG
1 ATGATATTATAGAATAAG
*
7402107 ATTATATTA
1 ATGATATTA
7402116 AATATATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.36
Consensus pattern (18 bp):
ATGATATTATAGAATAAG
Found at i:7416926 original size:31 final size:30
Alignment explanation
Indices: 7416891--7416966 Score: 75
Period size: 31 Copynumber: 2.5 Consensus size: 30
7416881 AAAAGTCTCA
*
7416891 TTTTTAGTGTTTGAAAAATAATTT-TCTTGAT
1 TTTTTAGTGTTTGAAAAAAAATTTAT-TT-AT
*
7416922 TTTTTA-TTTATTAGAAAAAAAATTTATTTAT
1 TTTTTAGTGT-TT-GAAAAAAAATTTATTTAT
*
7416953 TATTTAGTGTTTGA
1 TTTTTAGTGTTTGA
7416967 TTTTTATTCG
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
30 4 0.11
31 17 0.46
32 15 0.41
33 1 0.03
ACGTcount: A:0.33, C:0.01, G:0.11, T:0.55
Consensus pattern (30 bp):
TTTTTAGTGTTTGAAAAAAAATTTATTTAT
Found at i:7423285 original size:12 final size:12
Alignment explanation
Indices: 7423268--7423306 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
7423258 TTTTAATTAA
7423268 ATTAATATTATT
1 ATTAATATTATT
7423280 ATTAATATTATT
1 ATTAATATTATT
* *
7423292 ATCAAAATTATT
1 ATTAATATTATT
7423304 ATT
1 ATT
7423307 GATAATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTAATATTATT
Found at i:7429580 original size:16 final size:14
Alignment explanation
Indices: 7429544--7429574 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
7429534 GTTAACATTT
7429544 AAAAATTTTTCTAA
1 AAAAATTTTTCTAA
*
7429558 AAAAATTTTTTTAA
1 AAAAATTTTTCTAA
7429572 AAA
1 AAA
7429575 TGAATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
AAAAATTTTTCTAA
Found at i:7430398 original size:9 final size:9
Alignment explanation
Indices: 7430353--7430430 Score: 52
Period size: 9 Copynumber: 8.7 Consensus size: 9
7430343 TTTTACGGAA
7430353 TTTTTAT-T
1 TTTTTATAT
7430361 TTTTTAT-T
1 TTTTTATAT
* *
7430369 TTTATTAAAA
1 TTT-TTATAT
* *
7430379 TTTTGAGAT
1 TTTTTATAT
7430388 TTTTTATAT
1 TTTTTATAT
*
7430397 TTTTTAAAAT
1 TTTTT-ATAT
*
7430407 ATTTTATAT
1 TTTTTATAT
* *
7430416 ATTTTATAA
1 TTTTTATAT
7430425 TTTTTA
1 TTTTTA
7430431 AAACATATTT
Statistics
Matches: 55, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
8 11 0.20
9 34 0.62
10 10 0.18
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (9 bp):
TTTTTATAT
Found at i:7430421 original size:19 final size:18
Alignment explanation
Indices: 7430388--7430430 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 18
7430378 ATTTTGAGAT
*
7430388 TTTTTATATTTTTTAAAA
1 TTTTTATATATTTTAAAA
*
7430406 TATTTTATATATTTTATAA
1 T-TTTTATATATTTTAAAA
7430425 TTTTTA
1 TTTTTA
7430431 AAACATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTATATATTTTAAAA
Found at i:7430421 original size:28 final size:27
Alignment explanation
Indices: 7430351--7430433 Score: 98
Period size: 28 Copynumber: 3.1 Consensus size: 27
7430341 GTTTTTACGG
7430351 AATTTTTAT-TTTTTTAT-TTTTATTAA
1 AATTTTTATATTTTTTATATTTT-TTAA
* *
7430377 AATTTTGAGATTTTTTATATTTTTTAA
1 AATTTTTATATTTTTTATATTTTTTAA
* *
7430404 AATATTTTATATATTTTATAATTTTTAA
1 AAT-TTTTATATTTTTTATATTTTTTAA
7430432 AA
1 AA
7430434 CATATTTTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 7 0.15
27 15 0.31
28 26 0.54
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (27 bp):
AATTTTTATATTTTTTATATTTTTTAA
Found at i:7430986 original size:16 final size:16
Alignment explanation
Indices: 7430910--7430987 Score: 68
Period size: 16 Copynumber: 4.8 Consensus size: 16
7430900 ATTAAAATTC
*
7430910 ATTTCAAATCATTTTGA
1 ATTT-AAATAATTTTGA
* *
7430927 ATATGAAAT-TTTTTGA
1 AT-TTAAATAATTTTGA
* *
7430943 ATTTAAATATTTTTAA
1 ATTTAAATAATTTTGA
*
7430959 ATTTAAAAAATTTTGA
1 ATTTAAATAATTTTGA
*
7430975 ATTTGAATAATTT
1 ATTTAAATAATTT
7430988 CAAACTCGAA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
15 5 0.10
16 38 0.76
17 6 0.12
18 1 0.02
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (16 bp):
ATTTAAATAATTTTGA
Found at i:7431145 original size:21 final size:20
Alignment explanation
Indices: 7431100--7431157 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
7431090 TTTTTTTTAA
* *
7431100 TTTATAAGTTATAAACATAT
1 TTTATAAATTATAAATATAT
7431120 TTTATAAATTATAAATATATT
1 TTTATAAATTATAAATATA-T
* *
7431141 TTTATAATTTACAAATA
1 TTTATAAATTATAAATA
7431158 CTAATATATC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
20 17 0.52
21 16 0.48
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (20 bp):
TTTATAAATTATAAATATAT
Found at i:7433074 original size:16 final size:16
Alignment explanation
Indices: 7433049--7433082 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7433039 TAAAGGTTTG
7433049 GATTTAAGGGATTTTA
1 GATTTAAGGGATTTTA
*
7433065 GATTTTAGGGATTTTA
1 GATTTAAGGGATTTTA
7433081 GA
1 GA
7433083 AACCTAGGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.44
Consensus pattern (16 bp):
GATTTAAGGGATTTTA
Found at i:7433539 original size:19 final size:19
Alignment explanation
Indices: 7433489--7433541 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
7433479 ATCATGCATA
*
7433489 AATATATAAAAAAATACTT
1 AATATATAAAAAAATACAT
7433508 AA-A-ATAACAAAAATA-AT
1 AATATATAA-AAAAATACAT
7433525 AATATATAAAGAAAATA
1 AATATATAAA-AAAATA
7433542 GAAAATTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 7 0.24
18 10 0.34
19 12 0.41
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (19 bp):
AATATATAAAAAAATACAT
Found at i:7434567 original size:7 final size:7
Alignment explanation
Indices: 7434537--7434580 Score: 52
Period size: 7 Copynumber: 5.9 Consensus size: 7
7434527 TTTGTTTTAA
7434537 TTAATATT
1 TTAAT-TT
7434545 TTAATAATT
1 TTAAT--TT
*
7434554 TTGATTT
1 TTAATTT
7434561 TTAATTT
1 TTAATTT
7434568 TTAATTT
1 TTAATTT
7434575 TTAATT
1 TTAATT
7434581 AAATTAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
7 21 0.64
8 5 0.15
9 7 0.21
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (7 bp):
TTAATTT
Found at i:7434598 original size:12 final size:12
Alignment explanation
Indices: 7434583--7434625 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
7434573 TTTTAATTAA
7434583 ATTAATATTATT
1 ATTAATATTATT
7434595 ATTAATATTATT
1 ATTAATATTATT
* *
7434607 ATCAAAATTATT
1 ATTAATATTATT
7434619 ATTAATA
1 ATTAATA
7434626 ATAATAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (12 bp):
ATTAATATTATT
Found at i:7435516 original size:134 final size:132
Alignment explanation
Indices: 7435149--7435519 Score: 433
Period size: 133 Copynumber: 2.8 Consensus size: 132
7435139 GTCAAAGGAT
* * * * * * *
7435149 AACAACAATCGAGATCAAACTGTGATTTTGACTTAACGAGATCGGGATTGAATCGTGAATCAAAA
1 AACAAAAATCGAGATTAAACTGTGATTTTGAATTAAAGAGATCGGGATTGAACCGT-AATCAGAG
* * * *
7435214 AATAAAGAGACCGAGATCAAACCGCGAGTCAGAAAATAACGTTAATTTGGATTGGATCACAAATC
65 AATAAAGAGACCGAGATTAAACCACGAGTCA-AAAATAACGTTAACTTGGATTGAATCACAAATC
7435279 AAAA
129 AAAA
* * *
7435283 AACAAAAATCGAGATT-AACTGCGATTTTGAATTAAAGAGATCGAGATTGAATCACG-ATTCAGA
1 AACAAAAATCGAGATTAAACTGTGATTTTGAATTAAAGAGATCGGGATTGAA-C-CGTAATCAGA
* ** * *
7435346 GAATATAGAGACC-AGAATTAAACCACGAGTCAAAAAATGGCGTTAACTTGGATTGAATCATAAG
64 GAATAAAGAGACCGAG-ATTAAACCACGAGTC-AAAAATAACGTTAACTTGGATTGAATCACAAA
*
7435410 TCAGAA
127 TCAAAA
7435416 AACAAAAATCGAGATTAAACTGTGATTTTGAATTAAAGAGATCGGGATTGAACCGTAAGTCAGAG
1 AACAAAAATCGAGATTAAACTGTGATTTTGAATTAAAGAGATCGGGATTGAACCGTAA-TCAGAG
* * * *
7435481 AATAAAGAAACCGAGATTAAATCATGAATCGAAAAATAA
65 AATAAAGAGACCGAGATTAAACCACGAGTC-AAAAATAA
7435520 AGACAATCAA
Statistics
Matches: 198, Mismatches: 31, Indels: 16
0.81 0.13 0.07
Matches are distributed among these distances:
132 4 0.02
133 108 0.55
134 82 0.41
135 4 0.02
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.22
Consensus pattern (132 bp):
AACAAAAATCGAGATTAAACTGTGATTTTGAATTAAAGAGATCGGGATTGAACCGTAATCAGAGA
ATAAAGAGACCGAGATTAAACCACGAGTCAAAAATAACGTTAACTTGGATTGAATCACAAATCAA
AA
Found at i:7437331 original size:24 final size:24
Alignment explanation
Indices: 7437278--7437332 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
7437268 CACACGTGGC
* *
7437278 CCTAGTTGGCTACTGATAGGTGGT
1 CCTAGCTGGCTACTGATAGATGGT
** *
7437302 ATTAGCTGGCTACTGATATATGGT
1 CCTAGCTGGCTACTGATAGATGGT
7437326 CCTAGCT
1 CCTAGCT
7437333 CAAGTAGAAT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.20, C:0.18, G:0.27, T:0.35
Consensus pattern (24 bp):
CCTAGCTGGCTACTGATAGATGGT
Found at i:7441231 original size:17 final size:18
Alignment explanation
Indices: 7441191--7441231 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
7441181 AGGATATGAT
7441191 AATTTATTTATTTGTCAA
1 AATTTATTTATTTGTCAA
7441209 AA-TTATCTT-TTT-TCAA
1 AATTTAT-TTATTTGTCAA
7441225 AATTTAT
1 AATTTAT
7441232 GCAATTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 6 0.29
17 11 0.52
18 4 0.19
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.56
Consensus pattern (18 bp):
AATTTATTTATTTGTCAA
Found at i:7442361 original size:17 final size:17
Alignment explanation
Indices: 7442339--7442371 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7442329 TAATATGATA
7442339 GAATAAGATGATATTAT
1 GAATAAGATGATATTAT
*
7442356 GAATAAGATTATATTA
1 GAATAAGATGATATTA
7442372 AATATATAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
GAATAAGATGATATTAT
Found at i:7443439 original size:21 final size:21
Alignment explanation
Indices: 7443396--7443439 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7443386 AAAAAATGTT
* *
7443396 AATTAAATAAAAATAATACAA
1 AATTAAATAAAAATAAGAAAA
7443417 AATT-AATAAAAAATAAGAAAA
1 AATTAAAT-AAAAATAAGAAAA
7443438 AA
1 AA
7443440 AATTTTATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.20
Consensus pattern (21 bp):
AATTAAATAAAAATAAGAAAA
Found at i:7446215 original size:14 final size:15
Alignment explanation
Indices: 7446178--7446217 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7446168 TTCTCTTAAA
*
7446178 ATTATAATTATTTTAT
1 ATTATAAAT-TTTTAT
7446194 ATTATAAATTTTTAT
1 ATTATAAATTTTTAT
7446209 ATT-TAAATT
1 ATTATAAATT
7446218 AATATTCGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 6 0.26
15 9 0.39
16 8 0.35
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTATAAATTTTTAT
Found at i:7449994 original size:13 final size:13
Alignment explanation
Indices: 7449976--7450006 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7449966 ATCATATTAT
7449976 TTTCATATTTTAA
1 TTTCATATTTTAA
*
7449989 TTTCATATTTTAT
1 TTTCATATTTTAA
7450002 TTTCA
1 TTTCA
7450007 CGCAGAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.26, C:0.10, G:0.00, T:0.65
Consensus pattern (13 bp):
TTTCATATTTTAA
Found at i:7449994 original size:24 final size:24
Alignment explanation
Indices: 7449959--7450006 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
7449949 TATTAGTATA
7449959 ATTTTAAATCATA-TTATTTTCAT
1 ATTTTAAATCATATTTATTTTCAT
*
7449982 ATTTTAATTTCATATTTTATTTTCA
1 ATTTTAA-ATCATA-TTTATTTTCA
7450007 CGCAGAGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 7 0.33
24 5 0.24
26 9 0.43
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.60
Consensus pattern (24 bp):
ATTTTAAATCATATTTATTTTCAT
Found at i:7453447 original size:3 final size:3
Alignment explanation
Indices: 7453439--7453464 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7453429 TAAAAATTAA
7453439 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
7453465 ATATTTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7455179 original size:30 final size:30
Alignment explanation
Indices: 7455119--7455212 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 30
7455109 TTTTATTGGG
* * *
7455119 ATAAATTTTATGTTTTT-ATTT-TACTCAA
1 ATAAATTTTTTATTTTTAATTTATACTTAA
7455147 ATAAATTTTTTATTTTTAATTTATACTTAA
1 ATAAATTTTTTATTTTTAATTTATACTTAA
* *
7455177 ATAAGA-TCTTGATTTTTAATTTATA-TCTAA
1 ATAA-ATTTTTTATTTTTAATTTATACT-TAA
7455207 ATAAAT
1 ATAAAT
7455213 CATTAATCAT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
28 15 0.27
29 6 0.11
30 34 0.61
31 1 0.02
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.54
Consensus pattern (30 bp):
ATAAATTTTTTATTTTTAATTTATACTTAA
Found at i:7455226 original size:30 final size:30
Alignment explanation
Indices: 7455162--7455236 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
7455152 TTTTTTATTT
* **
7455162 TTAATTTATACTTAAATAAGATCTTGATTT
1 TTAATTTATACTTAAATAAGATCTTAATCA
7455192 TTAATTTATA-TCTAAATAA-ATCATTAATCA
1 TTAATTTATACT-TAAATAAGATC-TTAATCA
*
7455222 TTAATTTACACTTAA
1 TTAATTTATACTTAA
7455237 GTAAACTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
29 4 0.11
30 33 0.87
31 1 0.03
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (30 bp):
TTAATTTATACTTAAATAAGATCTTAATCA
Found at i:7456236 original size:17 final size:18
Alignment explanation
Indices: 7456209--7456243 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7456199 AAATTTTAAA
*
7456209 TTTTATCATTTTTGTATT
1 TTTTATCATTTTTATATT
7456227 TTTTAT-ATTTTTATATT
1 TTTTATCATTTTTATATT
7456244 GTATTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (18 bp):
TTTTATCATTTTTATATT
Found at i:7456948 original size:24 final size:22
Alignment explanation
Indices: 7456897--7456969 Score: 73
Period size: 19 Copynumber: 3.4 Consensus size: 22
7456887 TAATATTATT
*
7456897 AAATACAAAATA-C--AAAAAG
1 AAATACAAAATACCAAAAAAAA
*
7456916 AAATACAAAATATCAAATATAAAA
1 AAATACAAAATACCAAA-A-AAAA
7456940 AAATAC-AAATACCAAAAAAAA
1 AAATACAAAATACCAAAAAAAA
*
7456961 AAAAACAAA
1 AAATACAAA
7456970 CAAACAGAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
19 12 0.27
20 1 0.02
21 9 0.20
22 4 0.09
23 10 0.22
24 9 0.20
ACGTcount: A:0.75, C:0.11, G:0.01, T:0.12
Consensus pattern (22 bp):
AAATACAAAATACCAAAAAAAA
Found at i:7456956 original size:17 final size:17
Alignment explanation
Indices: 7456922--7456959 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
7456912 AAAGAAATAC
*
7456922 AAAATATCAAATATAAA
1 AAAATATCAAATACAAA
7456939 AAAATA-CAAATACCAAA
1 AAAATATCAAATA-CAAA
7456956 AAAA
1 AAAA
7456960 AAAAAACAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.16
Consensus pattern (17 bp):
AAAATATCAAATACAAA
Found at i:7470385 original size:47 final size:48
Alignment explanation
Indices: 7470229--7470747 Score: 612
Period size: 47 Copynumber: 11.0 Consensus size: 48
7470219 TTTTAAGAAT
*
7470229 AGATGA-ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCA
1 AGATGAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* ** *
7470277 AGATGAGATTTTAAAGTTGTTGAGCCTTTGCTGAGAAAAGTTTTTTC-
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * *
7470324 --A--AGATTTTAAAGTTGTTGAACCTCTACTGCGAGGAGCTTTTTCA
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * *
7470368 AGATG-GATTTTAAAGTTGTTGAGCCTTTACTGAGAGGAGC-TTTTCC
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* *
7470414 ATATGAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
1 AGATGAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * * *
7470463 AGATG-GATTTTAAAGTTATTAAGCCTCTACTGAGATGAGCTTTTCCA
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * *
7470510 A-ATGAGATTTTAAAGTTGTTAAGCCTCTGCTGAAAGGAGCTTTTCCA
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * *
7470557 AGATAAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCA
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* *
7470605 A-ATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAATCCTTTTCA
1 AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGG-AGCTTTTTCA
* * *
7470653 AGATGAGATTTTTAAAATTGCTGAGCCTCTGCTAAGAGGAGCTTTTTCA
1 AGATGAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
* * * *
7470702 AGCTAAGATTTTTAAAGTTATTGAGCCTCTACTGAGAGGAG-TTTTT
1 AGATGAGA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTT
7470748 ATCATATTTT
Statistics
Matches: 404, Mismatches: 53, Indels: 28
0.83 0.11 0.06
Matches are distributed among these distances:
43 35 0.09
45 1 0.00
46 13 0.03
47 142 0.35
48 128 0.32
49 58 0.14
50 27 0.07
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (48 bp):
AGATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCA
Found at i:7470457 original size:95 final size:93
Alignment explanation
Indices: 7470231--7470747 Score: 603
Period size: 95 Copynumber: 5.5 Consensus size: 93
7470221 TTAAGAATAG
* *
7470231 ATGAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTCCAAGATGAGATTTTAAAGTTG
1 ATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATG-GATTTTAAAGTTG
* ** * *
7470296 TTGAGCCTTTGCTGAGAAAAGTTTTTTCA
65 TTGAGCCTCTGCTGAGAGGAGCTTTTCCA
* * *
7470325 A-G--ATTTTAAAGTTGTTGAACCTCTACTGCGAGGAGCTTTTTCAAGATGGATTTTAAAGTTGT
1 ATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGGATTTTAAAGTTGT
* *
7470387 TGAGCCTTTACTGAGAGGAGCTTTTCCA
66 TGAGCCTCTGCTGAGAGGAGCTTTTCCA
7470415 TATGAAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGGATTTTAAAGTT
1 -ATGAAA-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGGATTTTAAAGTT
* * * *
7470480 ATTAAGCCTCTACTGAGATGAGCTTTTCCAA
64 GTTGAGCCTCTGCTGAGAGGAGCTTTTCC-A
* * * * **
7470511 ATGAGATTTTAAAGTTGTTAAGCCTCTGCTGAAAGGAGCTTTTCCAAGATAAAATTTTAAAGTTG
1 ATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT-GGATTTTAAAGTTG
7470576 TTGAGCCTCTGCTGAGAGGAGCTTTTCCAA
65 TTGAGCCTCTGCTGAGAGGAGCTTTTCC-A
* * * *
7470606 ATGAGATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAATCCTTTTCAAGATGAGATTTTTAAAAT
1 ATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGG-AGCTTTTTCAAGATG-GA-TTTTAAAGT
* * *
7470671 TGCTGAGCCTCTGCTAAGAGGAGCTTTTTCA
63 TGTTGAGCCTCTGCTGAGAGGAGCTTTTCCA
* *
7470702 A-GCTAAGATTTTTAAAGTTATTGAGCCTCTACTGAGAGGAG-TTTTT
1 ATG--AA-A-TTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTT
7470748 ATCATATTTT
Statistics
Matches: 366, Mismatches: 43, Indels: 25
0.84 0.10 0.06
Matches are distributed among these distances:
90 37 0.10
91 42 0.11
92 1 0.00
93 1 0.00
94 43 0.12
95 157 0.43
96 15 0.04
97 40 0.11
98 2 0.01
99 28 0.08
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (93 bp):
ATGAAATTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATGGATTTTAAAGTTGT
TGAGCCTCTGCTGAGAGGAGCTTTTCCA
Found at i:7471136 original size:29 final size:29
Alignment explanation
Indices: 7471085--7471141 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
7471075 TACCACTGCC
* * *
7471085 ACCATGCCCTACCCCCCATCCCTTTGATT
1 ACCATACCCTACCCCCCACCCCTCTGATT
* *
7471114 ACCATACCCTACCCTCTACCCCTCTGAT
1 ACCATACCCTACCCCCCACCCCTCTGAT
7471142 CACCCATCCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.19, C:0.49, G:0.05, T:0.26
Consensus pattern (29 bp):
ACCATACCCTACCCCCCACCCCTCTGATT
Found at i:7471448 original size:18 final size:17
Alignment explanation
Indices: 7471408--7471452 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
7471398 CTGCACAAAG
**
7471408 AAAAAATAAAGTCAGTTT
1 AAAAAA-AAAGTCAGAAT
7471426 AAAAAAAAAGTCAGAAT
1 AAAAAAAAAGTCAGAAT
7471443 ACAAAAAAAA
1 A-AAAAAAAA
7471453 TAGGTTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.69, C:0.07, G:0.09, T:0.16
Consensus pattern (17 bp):
AAAAAAAAAGTCAGAAT
Found at i:7472336 original size:17 final size:16
Alignment explanation
Indices: 7472314--7472360 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
7472304 TTTTTTTTAA
7472314 AATAAATAAAAATTATT
1 AATAAATAAAAATTA-T
*
7472331 AATAAATTAAAAAATAT
1 AATAAA-TAAAAATTAT
7472348 AAGT-AATAAAAAT
1 AA-TAAATAAAAAT
7472361 GAGAAGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 6 0.23
17 11 0.42
18 9 0.35
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (16 bp):
AATAAATAAAAATTAT
Found at i:7473607 original size:17 final size:17
Alignment explanation
Indices: 7473587--7473625 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7473577 AGAGTTTGTT
*
7473587 GAAAAAA-AATAAAAAAG
1 GAAAAAAGAA-AAAAAAA
7473604 GAAAAAAGAAAAAAAAA
1 GAAAAAAGAAAAAAAAA
7473621 GAAAA
1 GAAAA
7473626 GTATCAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (17 bp):
GAAAAAAGAAAAAAAAA
Found at i:7474081 original size:33 final size:34
Alignment explanation
Indices: 7474044--7474127 Score: 79
Period size: 34 Copynumber: 2.5 Consensus size: 34
7474034 TAAGTCCCAA
7474044 CCATTTCATTTTTTATCT-TGGTTCAATC-TAGAT
1 CCATTTCATTTTTTATCTATGGTTCAATCTTAG-T
* *
7474077 CCA-TTCCTTTTTTGA-CTTATGGTTCAGTCTTAGT
1 CCATTTCATTTTTT-ATC-TATGGTTCAATCTTAGT
*
7474111 -CATTTTATTTTTTATCT
1 CCATTTCATTTTTTATCT
7474128 CAGTTTAGTC
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
32 10 0.24
33 9 0.22
34 19 0.46
35 3 0.07
ACGTcount: A:0.18, C:0.18, G:0.10, T:0.55
Consensus pattern (34 bp):
CCATTTCATTTTTTATCTATGGTTCAATCTTAGT
Found at i:7474369 original size:34 final size:33
Alignment explanation
Indices: 7474175--7474400 Score: 103
Period size: 34 Copynumber: 6.8 Consensus size: 33
7474165 TTTAGTTTCG
* * **
7474175 GTCATTTCATTTTCAACCTCAG-TTCAATCT-A
1 GTCATTTCATTTTTAACTTGTGATTCAATCTCA
* * * * *
7474206 GGTCATTTAATTTTTTAACCTGTGATTTATTCTTA
1 -GTCATTTCA-TTTTTAACTTGTGATTCAATCTCA
* *
7474241 GTCACCTTAATTTTTAACTT-TGATTC-ATC-CAA
1 GTCA-TTTCATTTTTAACTTGTGATTCAATCTC-A
* *
7474273 GTCATTTC-TTTTTCAACTTAT-AGTTTAATCTC-
1 GTCATTTCATTTTT-AACTTGTGA-TTCAATCTCA
* * * *
7474305 GATCAATTCATTTATCAGACTT-CGACTCAATC-CA
1 G-TCATTTCATTT-TTA-ACTTGTGATTCAATCTCA
*
7474339 TGTTATTTCATTTTTTAACTTGTGATTCAATCTCA
1 -GTCATTTCA-TTTTTAACTTGTGATTCAATCTCA
* *
7474374 GTCATTTCATTTTTGACTTGTGGTTCA
1 GTCATTTCATTTTTAACTTGTGATTCA
7474401 GTCCTAATTA
Statistics
Matches: 147, Mismatches: 27, Indels: 39
0.69 0.13 0.18
Matches are distributed among these distances:
30 5 0.03
31 8 0.05
32 19 0.13
33 45 0.31
34 53 0.36
35 17 0.12
ACGTcount: A:0.24, C:0.19, G:0.09, T:0.47
Consensus pattern (33 bp):
GTCATTTCATTTTTAACTTGTGATTCAATCTCA
Found at i:7476833 original size:11 final size:10
Alignment explanation
Indices: 7476813--7476863 Score: 57
Period size: 10 Copynumber: 4.8 Consensus size: 10
7476803 CTACGAAGGG
7476813 AAAAGAAAAGAA
1 AAAAG-AAAG-A
7476825 AAAAGAAAGA
1 AAAAGAAAGA
7476835 AAAAGAATAGA
1 AAAAGAA-AGA
* *
7476846 AAGAGAAAAA
1 AAAAGAAAGA
7476856 AAAAGAAA
1 AAAAGAAA
7476864 CATGAAAGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
10 17 0.49
11 13 0.37
12 5 0.14
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (10 bp):
AAAAGAAAGA
Found at i:7476852 original size:21 final size:22
Alignment explanation
Indices: 7476813--7476863 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
7476803 CTACGAAGGG
*
7476813 AAAAGAAAAGAAAAAAGAAAGA
1 AAAAGAAAAGAAAAAAGAAAAA
* *
7476835 AAAAGAATAG-AAAGAGAAAAA
1 AAAAGAAAAGAAAAAAGAAAAA
7476856 AAAAGAAA
1 AAAAGAAA
7476864 CATGAAAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (22 bp):
AAAAGAAAAGAAAAAAGAAAAA
Found at i:7476873 original size:27 final size:26
Alignment explanation
Indices: 7476814--7476873 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 26
7476804 TACGAAGGGA
7476814 AAAGAAAAGAAAAAAGAAAGAAAAAG
1 AAAGAAAAGAAAAAAGAAAGAAAAAG
*
7476840 AATAGAAAGAGAAAAAA-AAAGAAACATG
1 AA-AGAAA-AGAAAAAAGAAAGAAA-AAG
7476868 AAAGAA
1 AAAGAA
7476874 GGAGGTGGCC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 2 0.07
27 16 0.53
28 12 0.40
ACGTcount: A:0.77, C:0.02, G:0.18, T:0.03
Consensus pattern (26 bp):
AAAGAAAAGAAAAAAGAAAGAAAAAG
Found at i:7477284 original size:31 final size:31
Alignment explanation
Indices: 7477244--7477302 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
7477234 ATAATCTATA
* * *
7477244 AAAAATTTATTGAGGGGATTATTGAAGGTCT
1 AAAAATTTATTAAAGGAATTATTGAAGGTCT
*
7477275 AAAAGTTTATTAAAGGAATTATTGAAGG
1 AAAAATTTATTAAAGGAATTATTGAAGG
7477303 CATATGTAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.41, C:0.02, G:0.24, T:0.34
Consensus pattern (31 bp):
AAAAATTTATTAAAGGAATTATTGAAGGTCT
Found at i:7477465 original size:62 final size:61
Alignment explanation
Indices: 7477412--7477529 Score: 143
Period size: 63 Copynumber: 2.0 Consensus size: 61
7477402 ATCCATACAA
* *
7477412 AAAAAATT-TT-AGGGGATTATTG-AGGCATTTTTTGCCAAAAATGCCTTTAATAATTGCCTC
1 AAAAAATTGTTGAGGGGATTATTGAAGGCATTTTTAGCCAAAAATGCCTTCAATAA-T-CCTC
* ** *
7477472 CAAATTTTGTTGAGGGGATTATTGAAGGCATTTTTAGCTAAAAATGCCTTCAATAATC
1 AAAAAATTGTTGAGGGGATTATTGAAGGCATTTTTAGCCAAAAATGCCTTCAATAATC
7477530 TTTCATAAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
60 5 0.10
61 3 0.06
62 13 0.27
63 28 0.57
ACGTcount: A:0.33, C:0.13, G:0.18, T:0.36
Consensus pattern (61 bp):
AAAAAATTGTTGAGGGGATTATTGAAGGCATTTTTAGCCAAAAATGCCTTCAATAATCCTC
Found at i:7479056 original size:15 final size:14
Alignment explanation
Indices: 7479022--7479065 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
7479012 TATTTTTGAG
*
7479022 AATTTTTCTAATAA
1 AATTTTTATAATAA
7479036 AATTTTTATAATAA
1 AATTTTTATAATAA
*
7479050 AATTTTT-TAGTAA
1 AATTTTTATAATAA
7479063 AAT
1 AAT
7479066 GAAATTCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
13 8 0.29
14 20 0.71
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (14 bp):
AATTTTTATAATAA
Found at i:7479211 original size:16 final size:16
Alignment explanation
Indices: 7479190--7479247 Score: 57
Period size: 15 Copynumber: 3.6 Consensus size: 16
7479180 AAATCTTTTT
7479190 AATAAAATATAAAAAA
1 AATAAAATATAAAAAA
*
7479206 AAT-AAATA-ATGAAAA
1 AATAAAATATA-AAAAA
*
7479221 TATAAAATGATAAAAAA
1 AATAAAAT-ATAAAAAA
7479238 ATATAAAATA
1 A-ATAAAATA
7479248 CTTTATAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
14 1 0.03
15 11 0.33
16 7 0.21
17 6 0.18
18 8 0.24
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.22
Consensus pattern (16 bp):
AATAAAATATAAAAAA
Found at i:7479403 original size:5 final size:5
Alignment explanation
Indices: 7479388--7479430 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
7479378 AGATATTAAT
*
7479388 AAAAG -AAAG AAAAG AAAAG AAAAG AAAATG AAAA- CAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAA-G AAAAG AAAAG AAAA
7479431 TTTTTTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
4 7 0.21
5 21 0.64
6 5 0.15
ACGTcount: A:0.79, C:0.02, G:0.16, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:7479413 original size:15 final size:15
Alignment explanation
Indices: 7479388--7479431 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
7479378 AGATATTAAT
7479388 AAAAGAAAGAAAA-G
1 AAAAGAAAGAAAATG
7479402 AAAAGAAAAGAAAATG
1 AAAAG-AAAGAAAATG
*
7479418 AAAACAAAGAAAAT
1 AAAAGAAAGAAAAT
7479432 TTTTTTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 5 0.19
15 17 0.63
16 5 0.19
ACGTcount: A:0.77, C:0.02, G:0.16, T:0.05
Consensus pattern (15 bp):
AAAAGAAAGAAAATG
Found at i:7480457 original size:16 final size:16
Alignment explanation
Indices: 7480438--7480568 Score: 126
Period size: 15 Copynumber: 8.2 Consensus size: 16
7480428 CTAGGTTTTT
7480438 AAAACCCTTAAAATCC
1 AAAACCCTTAAAATCC
** *
7480454 AAAATCCCCGAAAATCT
1 AAAA-CCCTTAAAATCC
*
7480471 AAAA-TCTTAAAATCC
1 AAAACCCTTAAAATCC
*
7480486 AAAATCC-TAAAATCC
1 AAAACCCTTAAAATCC
* *
7480501 GAAACCCCTAAAATCC
1 AAAACCCTTAAAATCC
*
7480517 AAAATCCCTT-AAATTC
1 AAAA-CCCTTAAAATCC
7480533 -AAACCCTTAAAATCC
1 AAAACCCTTAAAATCC
*
7480548 AAAACCCCCTAAAATCC
1 AAAA-CCCTTAAAATCC
7480565 AAAA
1 AAAA
7480569 TCGCAAACCT
Statistics
Matches: 93, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
14 5 0.05
15 32 0.34
16 24 0.26
17 32 0.34
ACGTcount: A:0.50, C:0.30, G:0.02, T:0.19
Consensus pattern (16 bp):
AAAACCCTTAAAATCC
Found at i:7480480 original size:32 final size:31
Alignment explanation
Indices: 7480471--7480568 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 31
7480461 CCGAAAATCT
*
7480471 AAAATCTTAAAATCCAAAAT--CCTAAAATCC
1 AAAACCTTAAAATCCAAAATCCCCTAAAAT-C
* * * *
7480501 GAAACCCCTAAAATCCAAAATCCCTTAAATTC
1 -AAAACCTTAAAATCCAAAATCCCCTAAAATC
* *
7480533 AAACCCTTAAAATCCAAAACCCCCTAAAATCC
1 AAAACCTTAAAATCCAAAATCCCCTAAAAT-C
7480565 AAAA
1 AAAA
7480569 TCGCAAACCT
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
31 43 0.80
32 5 0.09
33 6 0.11
ACGTcount: A:0.50, C:0.30, G:0.01, T:0.19
Consensus pattern (31 bp):
AAAACCTTAAAATCCAAAATCCCCTAAAATC
Found at i:7480499 original size:47 final size:45
Alignment explanation
Indices: 7480439--7480627 Score: 161
Period size: 47 Copynumber: 4.1 Consensus size: 45
7480429 TAGGTTTTTA
* *
7480439 AAACCCTTAAAATCCAAAATCCCCGAAAATCTAAAATCTTAAAATCC
1 AAACCCTTAAAATCCAAAA-CCCCTAAAATCCAAAATCTT-AAATCC
* * *
7480486 AAAATCC-TAAAATCCGAAACCCCTAAAATCCAAAATCCCTTAAATTC
1 -AAACCCTTAAAATCCAAAACCCCTAAAATCCAAAAT--CTTAAATCC
**
7480533 AAACCCTTAAAATCCAAAACCCCCTAAAATCCAAAATCGCAAA-CC
1 AAACCCTTAAAATCCAAAA-CCCCTAAAATCCAAAATCTTAAATCC
* * * * *
7480578 TTTAAACTCTT-AAATCC-AAGCCCCTAAAATTCAAAACCTTAAATCA
1 ---AAACCCTTAAAATCCAAAACCCCTAAAATCCAAAATCTTAAATCC
7480624 AAAC
1 AAAC
7480628 ACCAAACCTC
Statistics
Matches: 116, Mismatches: 17, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
43 4 0.03
45 20 0.17
46 27 0.23
47 33 0.28
48 32 0.28
ACGTcount: A:0.48, C:0.30, G:0.02, T:0.21
Consensus pattern (45 bp):
AAACCCTTAAAATCCAAAACCCCTAAAATCCAAAATCTTAAATCC
Found at i:7480500 original size:8 final size:8
Alignment explanation
Indices: 7480446--7480523 Score: 65
Period size: 7 Copynumber: 10.0 Consensus size: 8
7480436 TTAAAACCCT
7480446 TAAAATCC
1 TAAAATCC
7480454 -AAAATCCCC
1 TAAAAT--CC
*
7480463 GAAAAT-C
1 TAAAATCC
*
7480470 TAAAATCT
1 TAAAATCC
7480478 TAAAATCC
1 TAAAATCC
7480486 -AAAATCC
1 TAAAATCC
7480493 TAAAATCC
1 TAAAATCC
* **
7480501 GAAACCCC
1 TAAAATCC
7480509 TAAAATCC
1 TAAAATCC
7480517 -AAAATCC
1 TAAAATCC
7480524 CTTAAATTCA
Statistics
Matches: 56, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
7 25 0.45
8 24 0.43
9 2 0.04
10 5 0.09
ACGTcount: A:0.50, C:0.28, G:0.03, T:0.19
Consensus pattern (8 bp):
TAAAATCC
Found at i:7480516 original size:31 final size:31
Alignment explanation
Indices: 7480439--7480567 Score: 134
Period size: 32 Copynumber: 4.1 Consensus size: 31
7480429 TAGGTTTTTA
* * *
7480439 AAACCCTTAAAATCCAAAATCCCCGAAAATCT
1 AAACCCCTAAAATCCAAAAT-CCCTAAAATCC
** *
7480471 AAAATCTTAAAATCCAAAAT-CCTAAAATCC
1 AAACCCCTAAAATCCAAAATCCCTAAAATCC
* *
7480501 GAAACCCCTAAAATCCAAAATCCCTTAAATTC
1 -AAACCCCTAAAATCCAAAATCCCTAAAATCC
* *
7480533 AAACCCTTAAAATCCAAAACCCCCTAAAATCC
1 AAACCCCTAAAATCCAAAA-TCCCTAAAATCC
7480565 AAA
1 AAA
7480568 ATCGCAAACC
Statistics
Matches: 81, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
30 8 0.10
31 35 0.43
32 38 0.47
ACGTcount: A:0.49, C:0.30, G:0.02, T:0.19
Consensus pattern (31 bp):
AAACCCCTAAAATCCAAAATCCCTAAAATCC
Found at i:7480677 original size:16 final size:14
Alignment explanation
Indices: 7480653--7480693 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 14
7480643 TTTAAAACTG
7480653 AAACCCTAAAATCTTA
1 AAACCCTAAAATC--A
*
7480669 AAACTCTAAAATCA
1 AAACCCTAAAATCA
7480683 AAACCCTAAAA
1 AAACCCTAAAA
7480694 CCCTCAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
16 12 0.52
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.20
Consensus pattern (14 bp):
AAACCCTAAAATCA
Found at i:7480717 original size:29 final size:30
Alignment explanation
Indices: 7480581--7480723 Score: 84
Period size: 30 Copynumber: 4.8 Consensus size: 30
7480571 GCAAACCTTT
* ** *
7480581 AAACTCTTAAATCCAAGCCCCTAAAA-TTCA
1 AAACTCTAAAAT-CAAAACCCTAAAACCTCA
*
7480611 AAAC-CTTAAATCAAAACACC--AAACCTCA
1 AAACTCTAAAATCAAAAC-CCTAAAACCTCA
** * * * *
7480639 AATTTTTAAAA-CTGAAACCCTAAAATCTTA
1 AAACTCTAAAATC-AAAACCCTAAAACCTCA
7480669 AAACTCTAAAATCAAAACCCTAAAACCCTCA
1 AAACTCTAAAATCAAAACCCTAAAA-CCTCA
*
7480700 AAACT-T-AAATCCAAACCCTTAAAA
1 AAACTCTAAAATCAAAACCC-TAAAA
7480724 TCCGAATCTT
Statistics
Matches: 87, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
27 3 0.03
28 12 0.14
29 28 0.32
30 35 0.40
31 9 0.10
ACGTcount: A:0.50, C:0.27, G:0.01, T:0.22
Consensus pattern (30 bp):
AAACTCTAAAATCAAAACCCTAAAACCTCA
Found at i:7480751 original size:15 final size:15
Alignment explanation
Indices: 7480644--7480751 Score: 53
Period size: 15 Copynumber: 7.3 Consensus size: 15
7480634 CCTCAAATTT
7480644 TTAAAA-CTGAAACC
1 TTAAAATCTGAAACC
* * *
7480658 CTAAAATCTTAAAAC
1 TTAAAATCTGAAACC
*
7480673 TCTAAAATC-AAAACC
1 T-TAAAATCTGAAACC
* * * *
7480688 CTAAAACCCTCAAAAC
1 TTAAAA-TCTGAAACC
*
7480704 TT-AAATC-CAAACCC
1 TTAAAATCTGAAA-CC
* * *
7480718 TTAAAATCCGAATCT
1 TTAAAATCTGAAACC
7480733 TTAAAATCTGAAACC
1 TTAAAATCTGAAACC
7480748 TTAA
1 TTAA
7480752 TCTTTAAACC
Statistics
Matches: 68, Mismatches: 19, Indels: 13
0.68 0.19 0.13
Matches are distributed among these distances:
13 4 0.06
14 14 0.21
15 36 0.53
16 14 0.21
ACGTcount: A:0.48, C:0.25, G:0.03, T:0.24
Consensus pattern (15 bp):
TTAAAATCTGAAACC
Found at i:7482651 original size:53 final size:53
Alignment explanation
Indices: 7482588--7482694 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
7482578 GTACTCAAGG
7482588 GAAAGAAGAGATTGCTTAGTAGATGGTCACATATCGGTGCTACCACAGTCAGT
1 GAAAGAAGAGATTGCTTAGTAGATGGTCACATATCGGTGCTACCACAGTCAGT
7482641 GAAAGAAGAGATTGCTTAGTAGATGGTCACATATCGGTGCTACCACAGTCAGT
1 GAAAGAAGAGATTGCTTAGTAGATGGTCACATATCGGTGCTACCACAGTCAGT
7482694 G
1 G
7482695 CATATGGATC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.24
Consensus pattern (53 bp):
GAAAGAAGAGATTGCTTAGTAGATGGTCACATATCGGTGCTACCACAGTCAGT
Found at i:7492195 original size:12 final size:12
Alignment explanation
Indices: 7492178--7492218 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
7492168 TATTTTGCTT
7492178 AAAAAAATACAA
1 AAAAAAATACAA
7492190 AAAAAAAT---A
1 AAAAAAATACAA
*
7492199 TAAAAAATACAA
1 AAAAAAATACAA
7492211 AAAAAAAT
1 AAAAAAAT
7492219 GATTCAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
9 8 0.33
12 16 0.67
ACGTcount: A:0.83, C:0.05, G:0.00, T:0.12
Consensus pattern (12 bp):
AAAAAAATACAA
Found at i:7492227 original size:21 final size:21
Alignment explanation
Indices: 7492179--7492218 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
7492169 ATTTTGCTTA
7492179 AAAAAATACAAAAAAAAATAT
1 AAAAAATACAAAAAAAAATAT
7492200 AAAAAATACAAAAAAAAAT
1 AAAAAATACAAAAAAAAAT
7492219 GATTCAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.12
Consensus pattern (21 bp):
AAAAAATACAAAAAAAAATAT
Found at i:7493438 original size:35 final size:34
Alignment explanation
Indices: 7493399--7493467 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
7493389 CCAAATCACA
*
7493399 GTTTAATCCCGAT-TGTTGTTATTTTTTGACTTGTG
1 GTTTAATCCCGATCT-CT-TTATTTTTTGACTTGTG
* *
7493434 GTTTAATCCTGGTCTCTTTATTTTTTGACTTGTG
1 GTTTAATCCCGATCTCTTTATTTTTTGACTTGTG
7493468 ATTCAATCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
34 17 0.57
35 12 0.40
36 1 0.03
ACGTcount: A:0.13, C:0.13, G:0.19, T:0.55
Consensus pattern (34 bp):
GTTTAATCCCGATCTCTTTATTTTTTGACTTGTG
Found at i:7493559 original size:134 final size:135
Alignment explanation
Indices: 7493289--7493577 Score: 429
Period size: 134 Copynumber: 2.1 Consensus size: 135
7493279 ATCGTTAATC
* **
7493289 TTTGACTCGTGGTTTAAT-CTCGGTCTTTTTATTTTTTGACTTGTGATTCAATCCAAGTTCATGT
1 TTTGACTCGTGGTTTAATCCTCGGTCTCTTTATTTTTTGACTTGTGATTCAATCCAAGTTCACAT
* * *
7493353 TATTTTGACTCATGGTTCAATCCTAATTTCTTTAATCCAAATCACAGTTTAATCCCGATTGTTGT
66 TATTCTGACTCATGGTTCAATCCTAATTTCTTTAATCCAAATCACAGTCTAATCCCAATTGTTGT
7493418 TATTT
131 TATTT
* * *
7493423 TTTGACTTGTGGTTTAATCCT-GGTCTCTTTATTTTTTGACTTGTGATTCAATCTAAGTTGACAT
1 TTTGACTCGTGGTTTAATCCTCGGTCTCTTTATTTTTTGACTTGTGATTCAATCCAAGTTCACAT
* * * *
7493487 TATTCTGACTCGTGGTTCAATCCTGATTTCTTTAATCCAAAATCATAGTCTAATCTCAATTGTTG
66 TATTCTGACTCATGGTTCAATCCTAATTTCTTTAATCC-AAATCACAGTCTAATCCCAATTGTTG
7493552 TTATTT
130 TTATTT
*
7493558 TTTGACTCGTAGTTTAATCC
1 TTTGACTCGTGGTTTAATCC
7493578 CGATTAATCT
Statistics
Matches: 138, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
134 90 0.65
135 48 0.35
ACGTcount: A:0.22, C:0.17, G:0.14, T:0.47
Consensus pattern (135 bp):
TTTGACTCGTGGTTTAATCCTCGGTCTCTTTATTTTTTGACTTGTGATTCAATCCAAGTTCACAT
TATTCTGACTCATGGTTCAATCCTAATTTCTTTAATCCAAATCACAGTCTAATCCCAATTGTTGT
TATTT
Found at i:7493712 original size:181 final size:180
Alignment explanation
Indices: 7493409--7493760 Score: 519
Period size: 181 Copynumber: 1.9 Consensus size: 180
7493399 GTTTAATCCC
* * *
7493409 GATTGTTGTTATTTTTTGACTTGTGGTTTAATCCTGGTCTCTTTATTTTTTGACTTGTGATTCAA
1 GATTGTTGTTATTTTTTGACTCGTGATTTAATCCCGGTCTCTTTATTTTTTGACTTGTGATTCAA
* * * **
7493474 TCTAAGTTGACATTATTCTGACTCGTGGTTCAATCCTGATTTCTTTAATCCAAAATCATA-GTCT
66 TCCAAATTGACATTATTCTAACTCGTGGTTCAATCCCAATTTCTTTAATCCAAAATCATAGGT-T
7493538 AATCTCAATTGTTGTTATTTTTTGACTCGTAG-TTTAATCCCGATTAATCTT
130 AATCTCAATTGTTGTTATTTTTTGACTCGT-GTTTTAATCCCGATTAATCTT
7493589 GATTGTTGTTATTTTTTGACTCGTGATTTAATCCCGGTCTCTTTATTTTTTTGACTTGTGATTCA
1 GATTGTTGTTATTTTTTGACTCGTGATTTAATCCCGGTCTCTTTA-TTTTTTGACTTGTGATTCA
* * * *
7493654 ATCCAAATTGACGTTATTTTAACTCGTGGTTCAATCCCAATTTTTTTAATCTAAAATCATAGGTT
65 ATCCAAATTGACATTATTCTAACTCGTGGTTCAATCCCAATTTCTTTAATCCAAAATCATAGGTT
** * *
7493719 AATCTTGATTGTTGTTATTTTTTTACTTGTGTTTTAATCCCG
130 AATCTCAATTGTTGTTATTTTTTGACTCGTGTTTTAATCCCG
7493761 GTCTCTTTAT
Statistics
Matches: 153, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
180 43 0.28
181 108 0.71
182 2 0.01
ACGTcount: A:0.22, C:0.15, G:0.14, T:0.49
Consensus pattern (180 bp):
GATTGTTGTTATTTTTTGACTCGTGATTTAATCCCGGTCTCTTTATTTTTTGACTTGTGATTCAA
TCCAAATTGACATTATTCTAACTCGTGGTTCAATCCCAATTTCTTTAATCCAAAATCATAGGTTA
ATCTCAATTGTTGTTATTTTTTGACTCGTGTTTTAATCCCGATTAATCTT
Found at i:7493830 original size:135 final size:137
Alignment explanation
Indices: 7493581--7493882 Score: 428
Period size: 136 Copynumber: 2.2 Consensus size: 137
7493571 TTAATCCCGA
* *
7493581 TTAATCTTGATTGTTGTTATTTTTTGACTCGTGATTTAATCCCGGTCTCTTTATTTTTTTGACTT
1 TTAATCTTGATTGTTGTTATTTTTTGACTCGTGATTTAATCCCGGTCTCTTTATTTTTCTAACTT
* * * *
7493646 GTGATTCAATCCAAATTGACGTTATTTTAACTCGTGGTTCAATCCCAATTTTTTTAAT-CTAAAA
66 GTGATTCAATCCAAATTGACGTTATTCTAACTCGCGGTTCAATCCCAATTTCTTTAATCCAAAAA
7493710 TCATAGG
131 TCATAGG
* * *
7493717 TTAATCTTGATTGTTGTTATTTTTTTACTTGTGTTTTAATCCCGGTCTCTTTA-TTTTCTAACTT
1 TTAATCTTGATTGTTGTTATTTTTTGACTCGTGATTTAATCCCGGTCTCTTTATTTTTCTAACTT
* * * *
7493781 GTGATTCAATCCAAGTTGATGTTATTCTGACTCGCGGTTCAATCTCAATTTCTTTAATCCAAAAA
66 GTGATTCAATCCAAATTGACGTTATTCTAACTCGCGGTTCAATCCCAATTTCTTTAATCCAAAAA
* *
7493846 TCGTAGT
131 TCATAGG
* * *
7493853 TTAATCTCGATTGTTGTTAATCTTTGACTC
1 TTAATCTTGATTGTTGTTATTTTTTGACTC
7493883 ATGGTTCAAT
Statistics
Matches: 145, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
135 60 0.41
136 85 0.59
ACGTcount: A:0.23, C:0.16, G:0.13, T:0.48
Consensus pattern (137 bp):
TTAATCTTGATTGTTGTTATTTTTTGACTCGTGATTTAATCCCGGTCTCTTTATTTTTCTAACTT
GTGATTCAATCCAAATTGACGTTATTCTAACTCGCGGTTCAATCCCAATTTCTTTAATCCAAAAA
TCATAGG
Found at i:7493874 original size:35 final size:34
Alignment explanation
Indices: 7493834--7493939 Score: 99
Period size: 35 Copynumber: 3.1 Consensus size: 34
7493824 CTCAATTTCT
7493834 TTAATCCAAAAATCGTAGTTTAATCTCGATTGTTG
1 TTAATCC-AAAATCGTAGTTTAATCTCGATTGTTG
*** * * * *
7493869 TTAATCTTTGACTCATGGTTCAATCTCGATT-TCT-
1 TTAATC-CAAAATCGTAGTTTAATCTCGATTGT-TG
*
7493903 TTAATCCAAAATCGTAGTTTAATCTCAATTGTTG
1 TTAATCCAAAATCGTAGTTTAATCTCGATTGTTG
7493937 TTA
1 TTA
7493940 TTTTTTGACT
Statistics
Matches: 52, Mismatches: 15, Indels: 9
0.68 0.20 0.12
Matches are distributed among these distances:
33 17 0.33
34 11 0.21
35 24 0.46
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.43
Consensus pattern (34 bp):
TTAATCCAAAATCGTAGTTTAATCTCGATTGTTG
Found at i:7493947 original size:68 final size:69
Alignment explanation
Indices: 7493816--7493973 Score: 255
Period size: 68 Copynumber: 2.3 Consensus size: 69
7493806 TCTGACTCGC
* *
7493816 GGTTCAATCTCAATTTCTTTAATCCAAAAATCGTAGTTTAATCTCGATTGTTGTTAATCTTTGAC
1 GGTTCAATCTCGATTTCTTTAATCCAAAAATCGTAGTTTAATCTCAATTGTTGTTAATCTTTGAC
7493881 TCAT
66 TCAT
* *
7493885 GGTTCAATCTCGATTTCTTTAATCC-AAAATCGTAGTTTAATCTCAATTGTTGTTATTTTTTGAC
1 GGTTCAATCTCGATTTCTTTAATCCAAAAATCGTAGTTTAATCTCAATTGTTGTTAATCTTTGAC
7493949 TCAT
66 TCAT
* *
7493953 GGTTTAATCTCGATCTCTTTA
1 GGTTCAATCTCGATTTCTTTA
7493974 TTTTTTGACT
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
68 59 0.71
69 24 0.29
ACGTcount: A:0.25, C:0.17, G:0.12, T:0.46
Consensus pattern (69 bp):
GGTTCAATCTCGATTTCTTTAATCCAAAAATCGTAGTTTAATCTCAATTGTTGTTAATCTTTGAC
TCAT
Found at i:7494038 original size:204 final size:203
Alignment explanation
Indices: 7493675--7494108 Score: 548
Period size: 204 Copynumber: 2.1 Consensus size: 203
7493665 CGTTATTTTA
* * * * **
7493675 ACTCGTGGTTCAATCCCAATTTTTTTAATCTAAAATCATAGGTTAATCTTGATTGTTGTTATTTT
1 ACTCGTGGTTCAATCTCGATTTCTTTAATCCAAAATCATAGGTTAATCTCAATTGTTGTTATTTT
* ** * * *
7493740 TTTACTTGTGTTTTAATCCCGGTCTCTTTATTTTCTAACTTGTGATTCAATCCAAGTTGATGTTA
66 TTGACTCATGGTTTAATCCCGATCTCTTTATTTTCTAACTTGTGATTCAATCCAAGTTGACGTTA
* * *
7493805 TTCTGACTCGCGGTTCAATCTCAATTTCTTTAATCCAAAAATCGTAGTTTAATCTCGATTGTTGT
131 TTCTGACTCGCGGTTCAATCTCAATTTCTTTAATCC-AAAATCGCAGGTTAATCTCAATTGTTGT
7493870 TAATCTT-TG
195 T-ATCTTCTG
* * *
7493879 ACTCATGGTTCAATCTCGATTTCTTTAATCCAAAATCGTAGTTTAATCTCAATTGTTGTTATTTT
1 ACTCGTGGTTCAATCTCGATTTCTTTAATCCAAAATCATAGGTTAATCTCAATTGTTGTTATTTT
* * *
7493944 TTGACTCATGGTTTAATCTCGATCTCTTTATTTTTTGACTTGTGATTCAATCCAAGTTGACGTTA
66 TTGACTCATGGTTTAATCCCGATCTCTTTATTTTCTAACTTGTGATTCAATCCAAGTTGACGTTA
* ** * * *
7494009 TTCTGACTTGTTGTTCAATC-CTGATTTCTTTAATCCAAAATTGCAGGTTAATCTTAATTGTTGT
131 TTCTGACTCGCGGTTCAATCTC-AATTTCTTTAATCCAAAATCGCAGGTTAATCTCAATTGTTGT
*
7494073 TATTTTCTG
195 TATCTTCTG
* * *
7494082 ACTCGTGGTTTAATCTCGGTCTCTTTA
1 ACTCGTGGTTCAATCTCGATTTCTTTA
7494109 TTTTCTAACT
Statistics
Matches: 196, Mismatches: 32, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
202 4 0.02
203 50 0.26
204 142 0.72
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.47
Consensus pattern (203 bp):
ACTCGTGGTTCAATCTCGATTTCTTTAATCCAAAATCATAGGTTAATCTCAATTGTTGTTATTTT
TTGACTCATGGTTTAATCCCGATCTCTTTATTTTCTAACTTGTGATTCAATCCAAGTTGACGTTA
TTCTGACTCGCGGTTCAATCTCAATTTCTTTAATCCAAAATCGCAGGTTAATCTCAATTGTTGTT
ATCTTCTG
Found at i:7494042 original size:135 final size:135
Alignment explanation
Indices: 7493885--7494528 Score: 740
Period size: 135 Copynumber: 4.8 Consensus size: 135
7493875 TTTGACTCAT
* *
7493885 GGTTCAAT-CTCGATTTCTTTAATCCAAAATCGTAGTTTAATCTCAATTGTTGTTATTTTTTGAC
1 GGTTCAATCCT-GATTTCTTTAATCCAAAATCGCAGTTTAATCTCGATTGTTGTTATTTTTTGAC
* * *
7493949 TCATGGTTTAATCTCGATCTCTTTATTTTTTGACTTGTGATTCAATCCAAGTTGACGTTATTCTG
65 TCGTGGTTTAATCTCGATCTCTTTATTTTCTGACTTATGATTCAATCCAAGTTGACGTTATTCTG
*
7494014 ACTTGT
130 ACTTGC
* * * ** *
7494020 TGTTCAATCCTGATTTCTTTAATCCAAAATTGCAGGTTAATCTTAATTGTTGTTATTTTCTGACT
1 GGTTCAATCCTGATTTCTTTAATCCAAAATCGCAGTTTAATCTCGATTGTTGTTATTTTTTGACT
* * *
7494085 CGTGGTTTAATCTCGGTCTCTTTATTTTCTAACTTGTGATTCAATCCAAGTTGACG---TTCTGA
66 CGTGGTTTAATCTCGATCTCTTTATTTTCTGACTTATGATTCAATCCAAGTTGACGTTATTCTGA
7494147 -TTCGC
131 CTT-GC
** * * * *
7494152 GGTTCAATCCCAATTTCTTTAATCTAAAATCGTAGTTTAGTCTCGATTGTTGTTATTTTCTGACT
1 GGTTCAATCCTGATTTCTTTAATCCAAAATCGCAGTTTAATCTCGATTGTTGTTATTTTTTGACT
* * * * * *
7494217 TGTGGTTTAATCTC-AGTCTTTTTATTTTATAACTTATTATTCAATCCAAGTTGACGTTATTCTA
66 CGTGGTTTAATCTCGA-TCTCTTTATTTTCTGACTTATGATTCAATCCAAGTTGACGTTATTCTG
7494281 ACTTGC
130 ACTTGC
* *
7494287 GGTTCAAT-CTCGATTTTTTTAATCCAAAATCACAGTTTAATCTCGATTGTTGTTATTTTTTGAC
1 GGTTCAATCCT-GATTTCTTTAATCCAAAATCGCAGTTTAATCTCGATTGTTGTTATTTTTTGAC
* * * * *
7494351 TCGTGGTTTAATTTCGGTCTTTTTATTTTCTGACCTATGATTCAATCCAAGTTGATGTTATTCTG
65 TCGTGGTTTAATCTCGATCTCTTTATTTTCTGACTTATGATTCAATCCAAGTTGACGTTATTCTG
***
7494416 ACTCAT
130 ACTTGC
* * * * *
7494422 GGTTCAATCTTGATTTCTTT-A---AAAATTGCAATTTAATCTCGATTGTTGTT-TTTTTCTAAA
1 GGTTCAATCCTGATTTCTTTAATCCAAAATCGCAGTTTAATCTCGATTGTTGTTATTTTT-TGAC
*
7494482 TCGTGGTTTAATC-CTAATCTCTTTATATTT-TGACTTATGATTCAATC
65 TCGTGGTTTAATCTC-GATCTCTTTAT-TTTCTGACTTATGATTCAATC
7494529 TCAGTTCAAT
Statistics
Matches: 436, Mismatches: 60, Indels: 30
0.83 0.11 0.06
Matches are distributed among these distances:
130 6 0.01
131 66 0.15
132 114 0.26
134 2 0.00
135 243 0.56
136 5 0.01
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.47
Consensus pattern (135 bp):
GGTTCAATCCTGATTTCTTTAATCCAAAATCGCAGTTTAATCTCGATTGTTGTTATTTTTTGACT
CGTGGTTTAATCTCGATCTCTTTATTTTCTGACTTATGATTCAATCCAAGTTGACGTTATTCTGA
CTTGC
Found at i:7494059 original size:339 final size:336
Alignment explanation
Indices: 7493581--7494206 Score: 948
Period size: 339 Copynumber: 1.9 Consensus size: 336
7493571 TTAATCCCGA
** * *
7493581 TTAATCTTGATTGTTGTTATTTTTTGACTCGTGATTTAATCCCGGTCTCTTTATTTTTTTGACTT
1 TTAATCTCAATTGTTGTTATTTTTTGACTCATGATTTAATCCCGATCTCTTTATTTTTTTGACTT
* * *
7493646 GTGATTCAATCCAAATTGACGTTATTTTAACTCGTGGTTCAATCCCAATTTTTTTAATCTAAAAT
66 GTGATTCAATCCAAATTGACGTTATTCTAACTCGTGGTTCAATCCCAATTTCTTTAATCCAAAAT
* * * * * *
7493711 CATAGGTTAATCTTGATTGTTGTTATTTTTTTACTTGTGTTTTAATCCCGGTCTCTTTATTTTCT
131 CACAGGTTAATCTTAATTGTTGTTATTTTCTGACTCGTGGTTTAATCCCGGTCTCTTTATTTTCT
* *
7493776 AACTTGTGATTCAATCCAAGTTGATGTTATTCTGACTCGCGGTTCAATCTCAATTTCTTTAATCC
196 AACTTGTGATTCAATCCAAGTTGACG---TTCTGACTCGCGGTTCAATCCCAATTTCTTTAAT-C
7493841 AAAAATCGTAGTTTAATCTCGATTGTTGTTAATCTTTGACTCATGGTTCAATCTCGATTTCTTTA
257 AAAAATCGTAGTTTAATCTCGATTGTTGTTAATCTTTGACTCATGGTTCAATCTCGATTTCTTTA
7493906 ATCCAAAATCGTAGT
322 ATCCAAAATCGTAGT
* *
7493921 TTAATCTCAATTGTTGTTATTTTTTGACTCATGGTTTAATCTCGATCTCTTTA-TTTTTTGACTT
1 TTAATCTCAATTGTTGTTATTTTTTGACTCATGATTTAATCCCGATCTCTTTATTTTTTTGACTT
* * * * **
7493985 GTGATTCAATCCAAGTTGACGTTATTCTGACTTGTTGTTCAATCCTGATTTCTTTAATCCAAAAT
66 GTGATTCAATCCAAATTGACGTTATTCTAACTCGTGGTTCAATCCCAATTTCTTTAATCCAAAAT
** *
7494050 TGCAGGTTAATCTTAATTGTTGTTATTTTCTGACTCGTGGTTTAATCTCGGTCTCTTTATTTTCT
131 CACAGGTTAATCTTAATTGTTGTTATTTTCTGACTCGTGGTTTAATCCCGGTCTCTTTATTTTCT
* *
7494115 AACTTGTGATTCAATCCAAGTTGACGTTCTGATTCGCGGTTCAATCCCAATTTCTTTAATCTAAA
196 AACTTGTGATTCAATCCAAGTTGACGTTCTGACTCGCGGTTCAATCCCAATTTCTTTAATCAAAA
*
7494180 ATCGTAGTTTAGTCTCGATTGTTGTTA
261 ATCGTAGTTTAATCTCGATTGTTGTTA
7494207 TTTTCTGACT
Statistics
Matches: 257, Mismatches: 29, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
335 30 0.12
336 32 0.12
339 148 0.58
340 47 0.18
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.47
Consensus pattern (336 bp):
TTAATCTCAATTGTTGTTATTTTTTGACTCATGATTTAATCCCGATCTCTTTATTTTTTTGACTT
GTGATTCAATCCAAATTGACGTTATTCTAACTCGTGGTTCAATCCCAATTTCTTTAATCCAAAAT
CACAGGTTAATCTTAATTGTTGTTATTTTCTGACTCGTGGTTTAATCCCGGTCTCTTTATTTTCT
AACTTGTGATTCAATCCAAGTTGACGTTCTGACTCGCGGTTCAATCCCAATTTCTTTAATCAAAA
ATCGTAGTTTAATCTCGATTGTTGTTAATCTTTGACTCATGGTTCAATCTCGATTTCTTTAATCC
AAAATCGTAGT
Found at i:7494360 original size:267 final size:267
Alignment explanation
Indices: 7493885--7494528 Score: 764
Period size: 267 Copynumber: 2.4 Consensus size: 267
7493875 TTTGACTCAT
* * *
7493885 GGTTCAATCTCGATTTCTTTAATCCAAAATCGTAGTTTAATCTCAATTGTTGTTATTTTTTGACT
1 GGTTCAATCCCAATTTCTTTAATCCAAAATCGTAGTTTAATCTCAATTGTTGTTATTTTCTGACT
* * * *
7493950 CATGGTTTAATCTCGATCTCTTTATTTTTTGACTTGTGATTCAATCCAAGTTGACGTTATTCTGA
66 CATGGTTTAATCTCGATCTCTTTATTTTATAACTTATGATTCAATCCAAGTTGACGTTATTCTAA
** ** *
7494015 CTTGTTGTTCAATCCTGATTTCTTTAATCCAAAATTGCAGGTTAATCTTAATTGTTGTTATTTTC
131 CTTGCGGTTCAATCCTGATTTCTTTAATCCAAAATCACAGGTTAATCTCAATTGTTGTTATTTTC
* *
7494080 TGACTCGTGGTTTAATCTCGGTCTCTTTATTTTCTAACTTGTGATTCAATCCAAGTTGACGTTCT
196 TGACTCGTGGTTTAATCTCGGTCTCTTTATTTTCTAACCTATGATTCAATCCAAGTTGACGTTCT
7494145 GATTCGC
261 GATTCGC
* * *
7494152 GGTTCAATCCCAATTTCTTTAATCTAAAATCGTAGTTTAGTCTCGATTGTTGTTATTTTCTGACT
1 GGTTCAATCCCAATTTCTTTAATCCAAAATCGTAGTTTAATCTCAATTGTTGTTATTTTCTGACT
** * *
7494217 TGTGGTTTAATCTC-AGTCTTTTTATTTTATAACTTATTATTCAATCCAAGTTGACGTTATTCTA
66 CATGGTTTAATCTCGA-TCTCTTTATTTTATAACTTATGATTCAATCCAAGTTGACGTTATTCTA
* * *
7494281 ACTTGCGGTTCAAT-CTCGATTTTTTTAATCCAAAATCACAGTTTAATCTCGATTGTTGTTATTT
130 ACTTGCGGTTCAATCCT-GATTTCTTTAATCCAAAATCACAGGTTAATCTCAATTGTTGTTATTT
* * * * *
7494345 TTTGACTCGTGGTTTAATTTCGGTCTTTTTATTTTCTGACCTATGATTCAATCCAAGTTGATGTT
194 TCTGACTCGTGGTTTAATCTCGGTCTCTTTATTTTCTAACCTATGATTCAATCCAAGTTGACG--
* **
7494410 ATTCTGACTCAT
257 -TTCTGATTCGC
*** * * * * * * *
7494422 GGTTCAATCTTGATTTCTTT-A---AAAATTGCAATTTAATCTCGATTGTTGTTTTTTTCTAAAT
1 GGTTCAATCCCAATTTCTTTAATCCAAAATCGTAGTTTAATCTCAATTGTTGTTATTTTCTGACT
* * *
7494483 CGTGGTTTAATC-CTAATCTCTTTATATTT-TGACTTATGATTCAATC
66 CATGGTTTAATCTC-GATCTCTTTAT-TTTATAACTTATGATTCAATC
7494529 TCAGTTCAAT
Statistics
Matches: 323, Mismatches: 46, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
265 1 0.00
266 70 0.22
267 226 0.70
269 1 0.00
270 25 0.08
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.47
Consensus pattern (267 bp):
GGTTCAATCCCAATTTCTTTAATCCAAAATCGTAGTTTAATCTCAATTGTTGTTATTTTCTGACT
CATGGTTTAATCTCGATCTCTTTATTTTATAACTTATGATTCAATCCAAGTTGACGTTATTCTAA
CTTGCGGTTCAATCCTGATTTCTTTAATCCAAAATCACAGGTTAATCTCAATTGTTGTTATTTTC
TGACTCGTGGTTTAATCTCGGTCTCTTTATTTTCTAACCTATGATTCAATCCAAGTTGACGTTCT
GATTCGC
Found at i:7496308 original size:16 final size:17
Alignment explanation
Indices: 7496289--7496320 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7496279 CTAGGTTTCT
7496289 AAAACCC-CTAAAATCC
1 AAAACCCTCTAAAATCC
7496305 AAAACCCTCTAAAATC
1 AAAACCCTCTAAAATC
7496321 TGAAATCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (17 bp):
AAAACCCTCTAAAATCC
Found at i:7496349 original size:23 final size:23
Alignment explanation
Indices: 7496299--7496365 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 23
7496289 AAAACCCCTA
*
7496299 AAATCCAAAACCCTCTAAAATCTG
1 AAATCCCAAA-CCTCTAAAATCTG
* * *
7496323 AAATCCCAAACCTTTAAACTCTT
1 AAATCCCAAACCTCTAAAATCTG
*
7496346 AAAT-CCAAACCCCTAAAATC
1 AAATCCCAAACCTCTAAAATC
7496366 CAAACCCTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
22 13 0.36
23 14 0.39
24 9 0.25
ACGTcount: A:0.45, C:0.31, G:0.01, T:0.22
Consensus pattern (23 bp):
AAATCCCAAACCTCTAAAATCTG
Found at i:7496362 original size:14 final size:14
Alignment explanation
Indices: 7496345--7496387 Score: 59
Period size: 15 Copynumber: 3.0 Consensus size: 14
7496335 TTTAAACTCT
7496345 TAAATCCAAACCCC
1 TAAATCCAAACCCC
*
7496359 TAAAATCCAAACCCT
1 T-AAATCCAAACCCC
*
7496374 TAAATCAAAACCCC
1 TAAATCCAAACCCC
7496388 AAACCTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.16
Consensus pattern (14 bp):
TAAATCCAAACCCC
Found at i:7496366 original size:15 final size:15
Alignment explanation
Indices: 7496346--7496387 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
7496336 TTAAACTCTT
7496346 AAATCCAAACCCCTA
1 AAATCCAAACCCCTA
*
7496361 AAATCCAAA-CCCTT
1 AAATCCAAACCCCTA
*
7496375 AAATCAAAACCCC
1 AAATCCAAACCCC
7496388 AAACCTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.48, C:0.38, G:0.00, T:0.14
Consensus pattern (15 bp):
AAATCCAAACCCCTA
Found at i:7496479 original size:23 final size:23
Alignment explanation
Indices: 7496453--7496497 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7496443 CCCTAAAACC
*
7496453 CTTAAAATCTGAATCTTCAAAAT
1 CTTAAAACCTGAATCTTCAAAAT
* *
7496476 CTTAAAACCTTAATCTTTAAAA
1 CTTAAAACCTGAATCTTCAAAA
7496498 CTCTACTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.44, C:0.18, G:0.02, T:0.36
Consensus pattern (23 bp):
CTTAAAACCTGAATCTTCAAAAT
Found at i:7499263 original size:22 final size:23
Alignment explanation
Indices: 7499221--7499263 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
7499211 GTAGCTGGTG
*
7499221 CAGGGTATGGTGATAGTGGAGCT
1 CAGGGTATGGTGACAGTGGAGCT
7499244 CAGGGTA-GGTGTACAG-GGAG
1 CAGGGTATGGTG-ACAGTGGAG
7499264 GTGTACATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.23, C:0.09, G:0.47, T:0.21
Consensus pattern (23 bp):
CAGGGTATGGTGACAGTGGAGCT
Done.