Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 37 of 77
Found at i:7502411 original size:18 final size:18
Alignment explanation
Indices: 7502371--7502416 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7502361 AGGAACCTTT
7502371 TTTTTTTAAAACAAAATA
1 TTTTTTTAAAACAAAATA
* *
7502389 TTTTTATAAAA-AAATTA
1 TTTTTTTAAAACAAAATA
7502406 TGTTTTTTAAA
1 T-TTTTTTAAA
7502417 TTAATTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
TTTTTTTAAAACAAAATA
Found at i:7502550 original size:30 final size:31
Alignment explanation
Indices: 7502506--7502572 Score: 100
Period size: 30 Copynumber: 2.2 Consensus size: 31
7502496 GCATTTTTTA
* * *
7502506 AAACCCCTAAAATCCGAAATCCTTTAAATCC
1 AAACCCCTAAAATCCAAAATCCATAAAATCC
7502537 AAACCCC-AAAATCCAAAATCCATAAAATCC
1 AAACCCCTAAAATCCAAAATCCATAAAATCC
7502567 AAACCC
1 AAACCC
7502573 TTATATCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 26 0.79
31 7 0.21
ACGTcount: A:0.48, C:0.34, G:0.01, T:0.16
Consensus pattern (31 bp):
AAACCCCTAAAATCCAAAATCCATAAAATCC
Found at i:7502565 original size:16 final size:16
Alignment explanation
Indices: 7502513--7502569 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 16
7502503 TTAAAACCCC
* *
7502513 TAAAATCCGAAATCCT
1 TAAAATCCAAAATCCA
* *
7502529 TTAAATCC-AAA-CCC
1 TAAAATCCAAAATCCA
*
7502543 CAAAATCCAAAATCCA
1 TAAAATCCAAAATCCA
7502559 TAAAATCCAAA
1 TAAAATCCAAA
7502570 CCCTTATATC
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
14 8 0.24
15 6 0.18
16 19 0.58
ACGTcount: A:0.51, C:0.28, G:0.02, T:0.19
Consensus pattern (16 bp):
TAAAATCCAAAATCCA
Found at i:7502722 original size:12 final size:12
Alignment explanation
Indices: 7502697--7502731 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
7502687 AAACCAAACT
7502697 TCAAAACCTCTAC
1 TCAAAACCT-TAC
*
7502710 TCAAACCCTTAC
1 TCAAAACCTTAC
7502722 TCAAAACCTT
1 TCAAAACCTT
7502732 CTGAAAATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.26
Consensus pattern (12 bp):
TCAAAACCTTAC
Found at i:7508031 original size:16 final size:16
Alignment explanation
Indices: 7508010--7508045 Score: 65
Period size: 15 Copynumber: 2.3 Consensus size: 16
7508000 CCCTGTCGCT
7508010 AACCAAATTTCTCAAC
1 AACCAAATTTCTCAAC
7508026 AACC-AATTTCTCAAC
1 AACCAAATTTCTCAAC
7508041 AACCA
1 AACCA
7508046 TATCATTACC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 15 0.79
16 4 0.21
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.22
Consensus pattern (16 bp):
AACCAAATTTCTCAAC
Found at i:7514064 original size:10 final size:9
Alignment explanation
Indices: 7514043--7514095 Score: 52
Period size: 10 Copynumber: 5.6 Consensus size: 9
7514033 TATTTTGCTT
7514043 AAAAAGAAA
1 AAAAAGAAA
*
7514052 AAAAGGAAA
1 AAAAAGAAA
*
7514061 AAAATATAAA
1 AAAA-AGAAA
*
7514071 AAAAATACAA
1 AAAAAGA-AA
7514081 AAAAATGAAA
1 AAAAA-GAAA
7514091 AAAAA
1 AAAAA
7514096 AAAGTAATTC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 15 0.41
10 21 0.57
11 1 0.03
ACGTcount: A:0.83, C:0.02, G:0.08, T:0.08
Consensus pattern (9 bp):
AAAAAGAAA
Found at i:7514093 original size:11 final size:10
Alignment explanation
Indices: 7514058--7514096 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
7514048 GAAAAAAAGG
7514058 AAAAAAATATA
1 AAAAAAATA-A
*
7514069 AAAAAAATAC
1 AAAAAAATAA
7514079 AAAAAAATGAA
1 AAAAAAAT-AA
7514090 AAAAAAA
1 AAAAAAA
7514097 AAGTAATTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 8 0.32
11 17 0.68
ACGTcount: A:0.85, C:0.03, G:0.03, T:0.10
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:7515266 original size:109 final size:108
Alignment explanation
Indices: 7515130--7515562 Score: 489
Period size: 109 Copynumber: 4.0 Consensus size: 108
7515120 TTATGGTTAT
* ** * *
7515130 TTTTATTTCTTTGACTTGC-AGTTCAATCCC-GATCGTCGTTAATATTTG-CTTCATGGTTTAAT
1 TTTTATTTCTTTGACTTACGA-TTCAATCCCAG-TTATCTTTAATCTTTGAC-TCATGGTTTAAT
7515192 CTCGATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCGC
63 C-CGATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCGC
* *
7515239 TTTTATTTCTTTGACTTACGATTCAATCCTAGTTATCTTTAATCTTTGACTCGTGGTTTAATCCC
1 TTTTATTTCTTTGACTTACGATTCAATCCCAGTTATCTTTAATCTTTGACTCATGGTTTAAT-CC
* * * * * *
7515304 GGTCATTCTTATAGCCTCTTGACTTACAGTTTAATCCTAATTGT
65 GATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCGC
* * * *
7515348 TTTTATTTTTTTGACTTACGGTTCAGTCCCAGTTATCTTTAATCTTTGACTCATGGTTTAATCCC
1 TTTTATTTCTTTGACTTACGATTCAATCCCAGTTATCTTTAATCTTTGACTCATGGTTTAATCCG
* *
7515413 AGTCATTCTTATAGCTTTTCGACTTACAGTTTAATCTTAGTCGC
66 A-TCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCGC
* ** * **
7515457 TTTTATTT-TTCTAACTTGTGATTCAGTCCCAGTTATCTTTAATCTTTGACTCATTTTTTAATCC
1 TTTTATTTCTT-TGACTTACGATTCAATCCCAGTTATCTTTAATCTTTGACTCATGGTTTAATCC
* * * * *
7515521 TGATCATTTTTATAG-TTTTTGAATTACAGTTTAATCCCAGTC
65 -GATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTC
7515563 TCCTTATTTT
Statistics
Matches: 278, Mismatches: 39, Indels: 15
0.84 0.12 0.05
Matches are distributed among these distances:
108 27 0.10
109 246 0.88
110 5 0.02
ACGTcount: A:0.21, C:0.20, G:0.12, T:0.47
Consensus pattern (108 bp):
TTTTATTTCTTTGACTTACGATTCAATCCCAGTTATCTTTAATCTTTGACTCATGGTTTAATCCG
ATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCGC
Found at i:7515413 original size:35 final size:35
Alignment explanation
Indices: 7515246--7515415 Score: 106
Period size: 35 Copynumber: 4.7 Consensus size: 35
7515236 CGCTTTTATT
* * * *
7515246 TCTTTGACTTACGATTCAATCCTAGTTATCTTTAA
1 TCTTTGACTCACGGTTTAATCCCAGTTATCTTTAA
** * * *
7515281 TCTTTGACTCGTGGTTTAATCCCGGTCATTCTTATAG
1 TCTTTGACTCACGGTTTAATCCCAGTTA-TCTT-TAA
* * * * * * * *
7515318 CCTCTTGACTTACAGTTTAATCCTAATTGTTTTTATT
1 TCT-TTGACTCACGGTTTAATCCCAGTTATCTTTA-A
* * * *
7515355 TTTTTGACTTACGGTTCAGTCCCAGTTATCTTTAA
1 TCTTTGACTCACGGTTTAATCCCAGTTATCTTTAA
*
7515390 TCTTTGACTCATGGTTTAATCCCAGT
1 TCTTTGACTCACGGTTTAATCCCAGT
7515416 CATTCTTATA
Statistics
Matches: 95, Mismatches: 36, Indels: 8
0.68 0.26 0.06
Matches are distributed among these distances:
35 41 0.43
36 30 0.32
37 8 0.08
38 16 0.17
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.46
Consensus pattern (35 bp):
TCTTTGACTCACGGTTTAATCCCAGTTATCTTTAA
Found at i:7515728 original size:62 final size:63
Alignment explanation
Indices: 7515604--7515728 Score: 153
Period size: 64 Copynumber: 2.0 Consensus size: 63
7515594 ATCTCTTTAT
** * *
7515604 ATTCTGACTCGCGGTTCAATCTCGATCTTTTTAAGTTCAAAAATCACAATTTAATCTTGATTGA
1 ATTCTGACTCAAGGTTCAATCCCGATCTTTTTAAG-TCAAAAATCACAATTTAATCTCGATTGA
* * * * *
7515668 ATTCTGACTCAAGGTTCAATCCCGATTTTTTTAA-TCCAAAATTATAGTTTAATCTCGATTG
1 ATTCTGACTCAAGGTTCAATCCCGATCTTTTTAAGTCAAAAATCACAATTTAATCTCGATTG
7515729 TTATCTTTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 22 0.42
64 30 0.58
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (63 bp):
ATTCTGACTCAAGGTTCAATCCCGATCTTTTTAAGTCAAAAATCACAATTTAATCTCGATTGA
Found at i:7515770 original size:48 final size:45
Alignment explanation
Indices: 7515716--7515806 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 45
7515706 AAATTATAGT
* * *
7515716 TTAATCTCGATTGTTATCTTTATTTTTTGACTCGTGGTTTAATCCCGG
1 TTAATCTCGATTG-T-T-GTTATTTTTTAACTCATGGTTTAATCCCGG
*
7515764 TTAATCTTGATTGTTGTTATTTTTTAACTCATGGTTTAATCCC
1 TTAATCTCGATTGTTGTTATTTTTTAACTCATGGTTTAATCCC
7515807 AGTCTCTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
45 25 0.64
46 1 0.03
47 1 0.03
48 12 0.31
ACGTcount: A:0.19, C:0.15, G:0.14, T:0.52
Consensus pattern (45 bp):
TTAATCTCGATTGTTGTTATTTTTTAACTCATGGTTTAATCCCGG
Found at i:7515952 original size:135 final size:135
Alignment explanation
Indices: 7515762--7516075 Score: 477
Period size: 135 Copynumber: 2.3 Consensus size: 135
7515752 GTTTAATCCC
* * * *
7515762 GGTTAATCTTGATTGTTGTTATTTTTTAACTCATGGTTTAATCCCAGTCTCTTTATTTTCTGACT
1 GGTTAATCTCGATTGTTGTTATTTTCTAACTCGTGGTTTAATCCCAATCTCTTTATTTTCTGACT
*
7515827 TGTGATTCAATCCAAGTTGACGTTATTCTGACTCGAC-GTTCAATCCCAATTTCTTTAATCCAAA
66 TATGATTCAATCCAAGTTGACGTTATTCTGACTCG-CGGTTCAATCCCAATTTCTTTAATCCAAA
7515891 ATCACA
130 ATCACA
* * * *
7515897 GGTTAATCTCGATTGTTGTTATTTTCTAAGTTGTGGTTTAATCTCAATCTTTTTATTTTCTGACT
1 GGTTAATCTCGATTGTTGTTATTTTCTAACTCGTGGTTTAATCCCAATCTCTTTATTTTCTGACT
** *
7515962 TATGATTCAATCCAAGTTGACGTTATTCTGACTCGCGGTTCAATCCTGATTTTTTTAATCCAAAA
66 TATGATTCAATCCAAGTTGACGTTATTCTGACTCGCGGTTCAATCCCAATTTCTTTAATCCAAAA
*
7516027 TCCCA
131 TCACA
* *
7516032 GTTTAATCTCGATTGTTGTTATTTTCTGACTCGTGGTTTAATCC
1 GGTTAATCTCGATTGTTGTTATTTTCTAACTCGTGGTTTAATCC
7516076 TGATTAATTT
Statistics
Matches: 160, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
134 1 0.01
135 159 0.99
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (135 bp):
GGTTAATCTCGATTGTTGTTATTTTCTAACTCGTGGTTTAATCCCAATCTCTTTATTTTCTGACT
TATGATTCAATCCAAGTTGACGTTATTCTGACTCGCGGTTCAATCCCAATTTCTTTAATCCAAAA
TCACA
Found at i:7516083 original size:45 final size:45
Alignment explanation
Indices: 7516034--7516120 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
7516024 AAATCCCAGT
*
7516034 TTAATCTCGATTGTTGTTATTTTCTGACTCGTGGTTTAATCCTGA
1 TTAATCTCGATTATTGTTATTTTCTGACTCGTGGTTTAATCCTGA
* *
7516079 TTAATTTCGATTATTGTTATTTTTTGACTCGTGGTTTAATCC
1 TTAATCTCGATTATTGTTATTTTCTGACTCGTGGTTTAATCC
7516121 CGCTCTCTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.18, C:0.14, G:0.16, T:0.52
Consensus pattern (45 bp):
TTAATCTCGATTATTGTTATTTTCTGACTCGTGGTTTAATCCTGA
Found at i:7516130 original size:315 final size:316
Alignment explanation
Indices: 7515668--7516395 Score: 1016
Period size: 316 Copynumber: 2.3 Consensus size: 316
7515658 TCTTGATTGA
** * *
7515668 ATTCTGACTCAAGGTTCAATCCCGATTTTTTTAATCCAAAATTATAGTTTAATCTCGATTGTTAT
1 ATTCTGACTCGCGGTTCAATCCTGATTTTTTTAATCCAAAATCATAGTTTAATCTCGATTGTTA-
* * *
7515733 CTTTATTTTTTGACTCGTGGTTTAATCCCGGTTAATCTTGATTGTTGTTATTTTTTAACTCATGG
65 --TTATTTTCTGACTCGTGGTTTAATCCCGATTAATCTTGATTATTGTTATTTTTTAACTCATGG
*
7515798 TTTAATCCCAGTCTCTTTATTTTCTGACTTGTGATTCAATCCAAGTTGACGTTATTCTGACTCGA
128 TTTAATCCCAGTCTCTTTATTTTCTGACTTGCGATTCAATCCAAGTTGACGTTATTCTGACTCG-
*
7515863 C-GTTCAATCCCAATTTCTTT-AATCC-AAAATCACAGGTTAATCTCGATTGTTGTTATTTTCTA
192 CGGTTCAATCCCAATCTCTTTAAATCCAAAAATCACAGGTTAATCTCGATTGTTGTTATTTT-TA
* * * *
7515925 AGTTGTGGTTTAATCTCAATCTTTTTATTTTCTGACTTATGATTCAATCCAAGTTGACGTT
256 ACTCGTGGTTTAATCCCAATCTCTTTATTTTCTGACTTATGATTCAATCCAAGTTGACGTT
** *
7515986 ATTCTGACTCGCGGTTCAATCCTGATTTTTTTAATCCAAAATCCCAGTTTAATCTCGATTGTTGT
1 ATTCTGACTCGCGGTTCAATCCTGATTTTTTTAATCCAAAATCATAGTTTAATCTCGATTGTTAT
* * *
7516051 TATTTTCTGACTCGTGGTTTAATCCTGATTAAT-TTCGATTATTGTTATTTTTTGACTCGTGGTT
66 TATTTTCTGACTCGTGGTTTAATCCCGATTAATCTT-GATTATTGTTATTTTTTAACTCATGGTT
*
7516115 TAATCCC-GCTCTCTTTATTTTCTGACTTGCGATTCAATCCAAGTTGACGTTATTTTGACTCGCG
130 TAATCCCAG-TCTCTTTATTTTCTGACTTGCGATTCAATCCAAGTTGACGTTATTCTGACTCGCG
* * * *
7516179 GTTCAATCCCAATCTCTTTAAATCCAAAAATCATAGTTTAATCTTGATTGTTGTTATTTTTGACT
194 GTTCAATCCCAATCTCTTTAAATCCAAAAATCACAGGTTAATCTCGATTGTTGTTATTTTTAACT
** * *
7516244 CGTGGTTTAATCCCGGTCTCTTTATTTTCTGACTTGTGATTCAATCCAAGTTGATGTT
259 CGTGGTTTAATCCCAATCTCTTTATTTTCTGACTTATGATTCAATCCAAGTTGACGTT
* * * * * * * *
7516302 ATTTTGACTCGCAGTTCAATCTTGATTTCTTTAATCAAAAATCGTAATTTAATCTTGATTGTTAT
1 ATTCTGACTCGCGGTTCAATCCTGATTTTTTTAATCCAAAATCATAGTTTAATCTCGATTGTTAT
* *
7516367 TTTTTTCTGACTCGTGGTTCAATCCCGAT
66 TATTTTCTGACTCGTGGTTTAATCCCGAT
7516396 CTTTTTATAT
Statistics
Matches: 364, Mismatches: 41, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
314 4 0.01
315 132 0.36
316 140 0.38
317 31 0.09
318 57 0.16
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (316 bp):
ATTCTGACTCGCGGTTCAATCCTGATTTTTTTAATCCAAAATCATAGTTTAATCTCGATTGTTAT
TATTTTCTGACTCGTGGTTTAATCCCGATTAATCTTGATTATTGTTATTTTTTAACTCATGGTTT
AATCCCAGTCTCTTTATTTTCTGACTTGCGATTCAATCCAAGTTGACGTTATTCTGACTCGCGGT
TCAATCCCAATCTCTTTAAATCCAAAAATCACAGGTTAATCTCGATTGTTGTTATTTTTAACTCG
TGGTTTAATCCCAATCTCTTTATTTTCTGACTTATGATTCAATCCAAGTTGACGTT
Found at i:7518206 original size:16 final size:16
Alignment explanation
Indices: 7518185--7518215 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7518175 AGGAACCTTT
7518185 TTTTTAAAAAAAAATA
1 TTTTTAAAAAAAAATA
*
7518201 TTTTTATAAAAAAAT
1 TTTTTAAAAAAAAAT
7518216 TATGTTTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TTTTTAAAAAAAAATA
Found at i:7518491 original size:12 final size:12
Alignment explanation
Indices: 7518466--7518500 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
7518456 AACCAAACCT
7518466 TCAAAACCTATAC
1 TCAAAACCT-TAC
*
7518479 TCAAACCCTTAC
1 TCAAAACCTTAC
7518491 TCAAAACCTT
1 TCAAAACCTT
7518501 CTGAAAATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.40, C:0.34, G:0.00, T:0.26
Consensus pattern (12 bp):
TCAAAACCTTAC
Found at i:7519548 original size:22 final size:22
Alignment explanation
Indices: 7519521--7519563 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7519511 TATAATTTTT
*
7519521 ATTATAACTAAATAA-TTATAAA
1 ATTATAA-TAAAAAATTTATAAA
7519543 ATTATAATAAAAAATTTATAA
1 ATTATAATAAAAAATTTATAA
7519564 GTAAAATGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (22 bp):
ATTATAATAAAAAATTTATAAA
Found at i:7520379 original size:21 final size:20
Alignment explanation
Indices: 7520355--7520405 Score: 50
Period size: 20 Copynumber: 2.5 Consensus size: 20
7520345 TTTGAACACC
*
7520355 AATTTTAATTAATAAATTTAT
1 AATTTTAATTAATAAA-TTAA
* *
7520376 AA-TTTAAATATTAAATTAA
1 AATTTTAATTAATAAATTAA
7520395 ATATTTTAATT
1 A-ATTTTAATT
7520406 TATTCAAAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
19 4 0.17
20 12 0.50
21 8 0.33
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
AATTTTAATTAATAAATTAA
Found at i:7520383 original size:13 final size:14
Alignment explanation
Indices: 7520367--7520407 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 14
7520357 TTTTAATTAA
7520367 TAAAT-TTATAATT
1 TAAATATTATAATT
7520380 TAAATATTA-AA-T
1 TAAATATTATAATT
*
7520392 TAAATATTTTAATT
1 TAAATATTATAATT
7520406 TA
1 TA
7520408 TTCAAAGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
12 9 0.38
13 9 0.38
14 6 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TAAATATTATAATT
Found at i:7523678 original size:18 final size:18
Alignment explanation
Indices: 7523655--7523700 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7523645 TCTCTCATTT
7523655 TTTATTATTTA-TTCTTAA
1 TTTATTATTTAGTTCTT-A
*
7523673 TTTATTAATTAGTTCTTA
1 TTTATTATTTAGTTCTTA
*
7523691 TATATTATTT
1 TTTATTATTT
7523701 TTTTTATAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTATTATTTAGTTCTTA
Found at i:7523890 original size:24 final size:23
Alignment explanation
Indices: 7523863--7523918 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
7523853 TTTTTTCTTG
7523863 CATTTTTATTATTTTTTGTATTAT
1 CATTTTT-TTATTTTTTGTATTAT
** *
7523887 CATTAAGTTTATTTTTTTTATTAT
1 CATT-TTTTTATTTTTTGTATTAT
*
7523911 TATTTTTT
1 CATTTTTT
7523919 AAAAAAATTA
Statistics
Matches: 25, Mismatches: 6, Indels: 3
0.74 0.18 0.09
Matches are distributed among these distances:
23 2 0.08
24 22 0.88
25 1 0.04
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.71
Consensus pattern (23 bp):
CATTTTTTTATTTTTTGTATTAT
Found at i:7524975 original size:8 final size:8
Alignment explanation
Indices: 7524962--7525017 Score: 58
Period size: 8 Copynumber: 6.6 Consensus size: 8
7524952 CTGCCATCTT
7524962 TTTTTTTA
1 TTTTTTTA
7524970 TTTTTTTA
1 TTTTTTTA
7524978 TTTTTTTA
1 TTTTTTTA
*
7524986 TTGTATTTTG
1 TT-T-TTTTA
*
7524996 TATTTTTA
1 TTTTTTTA
*
7525004 TATTTTGTA
1 T-TTTTTTA
7525013 TTTTT
1 TTTTT
7525018 GTTTAATTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
8 27 0.68
9 8 0.20
10 5 0.12
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.80
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7524983 original size:15 final size:15
Alignment explanation
Indices: 7524963--7525017 Score: 60
Period size: 15 Copynumber: 3.8 Consensus size: 15
7524953 TGCCATCTTT
* *
7524963 TTTTTTATTTTTTTA
1 TTTTGTATTTTTATA
* *
7524978 TTTT-T-TTATTGTA
1 TTTTGTATTTTTATA
7524991 TTTTGTATTTTTATA
1 TTTTGTATTTTTATA
7525006 TTTTGTATTTTT
1 TTTTGTATTTTT
7525018 GTTTAATTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
13 10 0.29
14 2 0.06
15 22 0.65
ACGTcount: A:0.15, C:0.00, G:0.05, T:0.80
Consensus pattern (15 bp):
TTTTGTATTTTTATA
Found at i:7525371 original size:47 final size:47
Alignment explanation
Indices: 7525318--7525425 Score: 155
Period size: 47 Copynumber: 2.3 Consensus size: 47
7525308 ACTCTTTTCT
* *
7525318 GCAGAGGCTCAATAACTTTAAAAATCTCAT-TTGAAAAGCTCATCTCA
1 GCAGAGGCTCAACAACTTT-AAAATCTCATCTTGAAAAGCCCATCTCA
* *
7525365 GCAGAGGCTCAACAACTTTCAAATCTCATCTTGAAAAGCCCCTCTCA
1 GCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAGCCCATCTCA
*
7525412 GGAGAGGCTCAACA
1 GCAGAGGCTCAACA
7525426 TCCTCTCAGC
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
46 9 0.16
47 46 0.84
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (47 bp):
GCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAGCCCATCTCA
Found at i:7525433 original size:22 final size:22
Alignment explanation
Indices: 7525405--7525447 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
7525395 TTGAAAAGCC
* *
7525405 CCTCTCAGGAGAGGCTCAACAT
1 CCTCTCAGCAAAGGCTCAACAT
7525427 CCTCTCAGCAAAGGCTCAACA
1 CCTCTCAGCAAAGGCTCAACA
7525448 ACTTTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.35, G:0.19, T:0.16
Consensus pattern (22 bp):
CCTCTCAGCAAAGGCTCAACAT
Found at i:7525488 original size:68 final size:69
Alignment explanation
Indices: 7525360--7525493 Score: 189
Period size: 68 Copynumber: 2.0 Consensus size: 69
7525350 GAAAAGCTCA
* * * * *
7525360 TCTCAGCAGAGGCTCAACAACTTTCAAATCTCATCTTGAAAAGCCCCTCTCAGGAGAGGCTCAAC
1 TCTCAGCAAAGGCTCAACAACTTTAAAATCTCATCTTAAAAAGCCCCTCTCAGCAAAGGCTCAAC
7525425 ATCC
66 ATCC
* **
7525429 TCTCAGCAAAGGCTCAACAACTTTAAAAT-TTATCTTAAAAAGCTTCTCTCAGCAAAGGCTCAAC
1 TCTCAGCAAAGGCTCAACAACTTTAAAATCTCATCTTAAAAAGCCCCTCTCAGCAAAGGCTCAAC
7525493 A
66 A
7525494 ACTTAAAAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
68 30 0.53
69 27 0.47
ACGTcount: A:0.34, C:0.28, G:0.13, T:0.24
Consensus pattern (69 bp):
TCTCAGCAAAGGCTCAACAACTTTAAAATCTCATCTTAAAAAGCCCCTCTCAGCAAAGGCTCAAC
ATCC
Found at i:7525578 original size:47 final size:48
Alignment explanation
Indices: 7525426--7526115 Score: 712
Period size: 47 Copynumber: 14.6 Consensus size: 48
7525416 AGGCTCAACA
* *
7525426 TCCTCTCAGCAAAGGCTCAACAACTTTAAAATTT-ATCTT-AAAAAGC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
* * * * * *
7525472 TTCTCTCAGCAAAGGCTCAACAACTTAAAAATCTCAT-TTG-AAAAGA
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
*
7525518 TCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTT-AAAAAGC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
** * * *
7525565 TTTTTTCAACAGAGGCTCAACAATTTTAAAATCTT-ATC-TGGAAAAGC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAAT-TTCATCTTGAAAAAGC
* * *
7525612 TCCTCTCAGCAAAGGCTCAACAACTTTAAAAATTC-TCTTGAAAAAGC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
* ** * * *
7525659 TCCTCTCAGCAGAAACTCAACGATTTTAAAATCTCATC-TGAAAAAGC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
* *
7525706 TTCTCTCAACAGAGGCTCAACAACTTTAAAA-TCCATCTTGAAAAAGC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
** * * *
7525753 TCCTCTCAGTAGAGGCTCAACAACTTTAAAAATTC-TCTTAAAAAAAC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
*
7525800 TCTTCTCAACAGAGGCTCAACAACTTTAAAA-TTCATCTTGAAAAAGGC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAA-GC
** * * * *
7525848 TCCTCTCAGTAAAGGCTCAACAATTTTAAAATCTCAT-TTGGAAAAGC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
* * * * *
7525895 TCCTCTTAACAAAGGCTTAACAACTTTAAAATCT-ATCTTGAAAAAGT
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
* ** * *
7525942 TTCTCTCAGTAGAGGCTCAACGACTTTAAAA-TCCATCTCTTGAAAAAGC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCA--TCTTGAAAAAGC
** * *
7525991 TTTTCTCAACAGAGGCTTAACAACTTTAAAACTTC-TCTTGAAAAAGC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
* * * * *
7526038 TCCTTTCAATAGAGTCTCAACAACTTTAAAATCTCAT-TTGGAAAAGC
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
*
7526085 TCCTCTCAACAGAGGCTCGACAACTTTAAAA
1 TCCTCTCAACAGAGGCTCAACAACTTTAAAA
7526116 ATCTCATATG
Statistics
Matches: 532, Mismatches: 92, Indels: 39
0.80 0.14 0.06
Matches are distributed among these distances:
46 85 0.16
47 363 0.68
48 41 0.08
49 41 0.08
50 2 0.00
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (48 bp):
TCCTCTCAACAGAGGCTCAACAACTTTAAAATTTCATCTTGAAAAAGC
Found at i:7526898 original size:9 final size:8
Alignment explanation
Indices: 7526878--7526920 Score: 50
Period size: 8 Copynumber: 5.1 Consensus size: 8
7526868 AGTCATTATC
7526878 TTTTCATTT
1 TTTTC-TTT
*
7526887 TTTACTTT
1 TTTTCTTT
*
7526895 TTTTCATT
1 TTTTCTTT
7526903 TTTTCTCTT
1 TTTTCT-TT
7526912 TTTTCTTT
1 TTTTCTTT
7526920 T
1 T
7526921 AAGCAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
8 17 0.59
9 12 0.41
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTCTTT
Found at i:7526900 original size:17 final size:17
Alignment explanation
Indices: 7526878--7526920 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
7526868 AGTCATTATC
7526878 TTTTCATTTTTTACT-TT
1 TTTTCATTTTTT-CTCTT
7526895 TTTTCATTTTTTCTCTT
1 TTTTCATTTTTTCTCTT
7526912 TTTTC-TTTT
1 TTTTCATTTT
7526921 AAGCAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.24
17 19 0.76
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTTCATTTTTTCTCTT
Found at i:7538194 original size:18 final size:18
Alignment explanation
Indices: 7538171--7538216 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7538161 TCTCTCATTT
7538171 TTTATTATTTA-TTCTTAA
1 TTTATTATTTAGTTCTT-A
*
7538189 TTTATTAATTAGTTCTTA
1 TTTATTATTTAGTTCTTA
*
7538207 TATATTATTT
1 TTTATTATTT
7538217 TTTTATAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 19 0.79
19 5 0.21
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTATTATTTAGTTCTTA
Found at i:7541376 original size:15 final size:15
Alignment explanation
Indices: 7541356--7541389 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
7541346 TATTGAATAA
*
7541356 TATTTTTTATTATAT
1 TATTTTTAATTATAT
7541371 TATTTTTAATTATAT
1 TATTTTTAATTATAT
7541386 TATT
1 TATT
7541390 AGTTGATGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTTTAATTATAT
Found at i:7542270 original size:22 final size:22
Alignment explanation
Indices: 7542243--7542286 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7542233 TATAATTTTT
*
7542243 ATTATAACTAAATAA-TTATAAA
1 ATTATAA-TAAAAAATTTATAAA
7542265 ATTATAATAAAAAATTTATAAA
1 ATTATAATAAAAAATTTATAAA
7542287 TAAAATGCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
ATTATAATAAAAAATTTATAAA
Found at i:7543102 original size:13 final size:14
Alignment explanation
Indices: 7543086--7543126 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 14
7543076 TTTTAATTAA
7543086 TAAAT-TTATAATT
1 TAAATATTATAATT
7543099 TAAATATTA-AA-T
1 TAAATATTATAATT
*
7543111 TAAATATTTTAATT
1 TAAATATTATAATT
7543125 TA
1 TA
7543127 TTCAAAGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
12 9 0.38
13 9 0.38
14 6 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TAAATATTATAATT
Found at i:7544660 original size:15 final size:15
Alignment explanation
Indices: 7544640--7544669 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7544630 TTCATTTCAG
*
7544640 TTTAATATTAATAAT
1 TTTAATAATAATAAT
7544655 TTTAATAATAATAAT
1 TTTAATAATAATAAT
7544670 AATAATAATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTTAATAATAATAAT
Found at i:7544670 original size:24 final size:22
Alignment explanation
Indices: 7544642--7544698 Score: 80
Period size: 24 Copynumber: 2.5 Consensus size: 22
7544632 CATTTCAGTT
*
7544642 TAATATTAATAATTTTAATAATAA
1 TAATAATAATAATTTTAA-AA-AA
7544666 TAATAATAATAATTTTAAAAAA
1 TAATAATAATAATTTTAAAAAA
7544688 T-ATAATAATAA
1 TAATAATAATAA
7544699 AAAAAAAAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 10 0.31
22 3 0.09
23 2 0.06
24 17 0.53
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
TAATAATAATAATTTTAAAAAA
Found at i:7544699 original size:15 final size:16
Alignment explanation
Indices: 7544657--7544702 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 16
7544647 TTAATAATTT
*
7544657 TAATAATAAT-AATAA
1 TAATAATAATAAAAAA
**
7544672 TAATAATTTTAAAAAA
1 TAATAATAATAAAAAA
7544688 T-ATAATAATAAAAAA
1 TAATAATAATAAAAAA
7544703 AAAAGACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
15 20 0.80
16 5 0.20
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
TAATAATAATAAAAAA
Found at i:7546172 original size:16 final size:16
Alignment explanation
Indices: 7546121--7546189 Score: 68
Period size: 16 Copynumber: 4.4 Consensus size: 16
7546111 CTAGGTTTCT
* *
7546121 AAAACTCCTTAAATCC
1 AAAACCCCTCAAATCC
*
7546137 -AAACCCCTCAAATCT
1 AAAACCCCTCAAATCC
*
7546152 GAAACCCCTCAAATCC
1 AAAACCCCTCAAATCC
* * *
7546168 AAAACCTCTAAAATTC
1 AAAACCCCTCAAATCC
7546184 AAAACC
1 AAAACC
7546190 TCTTAAAATT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
15 12 0.27
16 32 0.73
ACGTcount: A:0.45, C:0.35, G:0.01, T:0.19
Consensus pattern (16 bp):
AAAACCCCTCAAATCC
Found at i:7546190 original size:16 final size:17
Alignment explanation
Indices: 7546162--7546200 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
7546152 GAAACCCCTC
*
7546162 AAATCCAAAACCTC-TA
1 AAATTCAAAACCTCTTA
7546178 AAATTCAAAACCTCTTA
1 AAATTCAAAACCTCTTA
7546195 AAATTC
1 AAATTC
7546201 GAAATCTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATTCAAAACCTCTTA
Found at i:7546210 original size:15 final size:16
Alignment explanation
Indices: 7546162--7546211 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
7546152 GAAACCCCTC
*
7546162 AAATCCAAAAC-CTCTA
1 AAATTCAAAACTCT-TA
7546178 AAATTCAAAACCTCTTA
1 AAATTCAAAA-CTCTTA
*
7546195 AAATTCGAAA-TCTTA
1 AAATTCAAAACTCTTA
7546210 AA
1 AA
7546212 CCTTTAAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 7 0.23
16 9 0.30
17 12 0.40
18 2 0.07
ACGTcount: A:0.50, C:0.22, G:0.02, T:0.26
Consensus pattern (16 bp):
AAATTCAAAACTCTTA
Found at i:7546317 original size:15 final size:15
Alignment explanation
Indices: 7546122--7546317 Score: 52
Period size: 15 Copynumber: 13.0 Consensus size: 15
7546112 TAGGTTTCTA
7546122 AAACTCCTT-AAATCC
1 AAAC-CCTTAAAATCC
* * *
7546137 AAACCCCTCAAATCTG
1 AAACCCTTAAAATC-C
* *
7546153 AAACCCCTCAAATCC
1 AAACCCTTAAAATCC
* *
7546168 AAAACCTCTAAAATTCA
1 AAACCCT-TAAAA-TCC
*
7546185 AAACCTCTTAAAATTCG
1 AAACC-CTTAAAA-TCC
* * **
7546202 AAA-TCTTAAACCTTT
1 AAACCCTTAAA-ATCC
*
7546217 AAACTCTT-AAATCC
1 AAACCCTTAAAATCC
* *
7546231 AAA-CCTTTAAATCA
1 AAACCCTTAAAATCC
*
7546245 AAACCC-TAAACTTTCC
1 AAACCCTTAAA--ATCC
*
7546261 ATA-CCTTAAAA-CC
1 AAACCCTTAAAATCC
*
7546274 AAACCC-TAAAACCCTC
1 AAACCCTTAAAA-TC-C
*
7546290 AAA-ACTT-AAATCC
1 AAACCCTTAAAATCC
7546303 AAACCCTTAAAATCC
1 AAACCCTTAAAATCC
7546318 GAATCTTCAA
Statistics
Matches: 135, Mismatches: 27, Indels: 38
0.68 0.14 0.19
Matches are distributed among these distances:
13 16 0.12
14 24 0.18
15 41 0.30
16 35 0.26
17 17 0.13
18 2 0.01
ACGTcount: A:0.44, C:0.31, G:0.01, T:0.24
Consensus pattern (15 bp):
AAACCCTTAAAATCC
Found at i:7551566 original size:8 final size:8
Alignment explanation
Indices: 7551553--7551604 Score: 50
Period size: 8 Copynumber: 6.1 Consensus size: 8
7551543 AGGATAGGGC
7551553 ATAAAAAA
1 ATAAAAAA
7551561 ATAAAAATAA
1 AT-AAAA-AA
7551571 ATAAAAAA
1 ATAAAAAA
7551579 AGTAAAAAA
1 A-TAAAAAA
* *
7551588 AGAAAAGA
1 ATAAAAAA
*
7551596 AGAAAAAA
1 ATAAAAAA
7551604 A
1 A
7551605 AAAGACATCT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
8 18 0.47
9 16 0.42
10 4 0.11
ACGTcount: A:0.83, C:0.00, G:0.08, T:0.10
Consensus pattern (8 bp):
ATAAAAAA
Found at i:7551574 original size:10 final size:9
Alignment explanation
Indices: 7551555--7551588 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
7551545 GATAGGGCAT
7551555 AAAAAAATA
1 AAAAAAATA
7551564 AAAATAAATA
1 AAAA-AAATA
*
7551574 AAAAAAGTA
1 AAAAAAATA
7551583 AAAAAA
1 AAAAAA
7551589 GAAAAGAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (9 bp):
AAAAAAATA
Found at i:7551593 original size:17 final size:17
Alignment explanation
Indices: 7551553--7551605 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
7551543 AGGATAGGGC
*
7551553 ATAAAAAAATAAAAATAA
1 ATAAAAAAAGAAAAA-AA
*
7551571 ATAAAAAAAGTAAAAAA
1 ATAAAAAAAGAAAAAAA
* *
7551588 AGAAAAGAAGAAAAAAA
1 ATAAAAAAAGAAAAAAA
7551605 A
1 A
7551606 AAGACATCTT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
17 17 0.57
18 13 0.43
ACGTcount: A:0.83, C:0.00, G:0.08, T:0.09
Consensus pattern (17 bp):
ATAAAAAAAGAAAAAAA
Found at i:7553346 original size:41 final size:39
Alignment explanation
Indices: 7553300--7553412 Score: 127
Period size: 41 Copynumber: 2.8 Consensus size: 39
7553290 GTTTTTAAAG
* * *
7553300 TTTTAAAGTCTCTGTTTAAAAGGAACCATTCTCAATCAAGA
1 TTTTAAAG-CTCTGTTTAAGAGGAACC-TTCTCAAACAAAA
*
7553341 TTTTAAAGCCTCTGTTTAAGAGGAACCTTTTTCAAACAAAA
1 TTTTAAAG-CTCTGTTTAAGAGGAACC-TTCTCAAACAAAA
* *
7553382 TTTTGAAGCTTCTGTTTAGGAGGAACCTTCT
1 TTTTAAAGC-TCTGTTTAAGAGGAACCTTCT
7553413 TTAAAACAAG
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
40 4 0.06
41 58 0.94
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (39 bp):
TTTTAAAGCTCTGTTTAAGAGGAACCTTCTCAAACAAAA
Found at i:7553881 original size:22 final size:22
Alignment explanation
Indices: 7553844--7553886 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7553834 ATCGATTCTA
*
7553844 TAAGACCTCCGAGCATGATTTC
1 TAAGACCTCCGAGCATAATTTC
7553866 TAAGACCTCC-AGGCATAATTT
1 TAAGACCTCCGA-GCATAATTT
7553887 TGATTTGCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 1 0.05
22 18 0.95
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (22 bp):
TAAGACCTCCGAGCATAATTTC
Found at i:7553983 original size:110 final size:110
Alignment explanation
Indices: 7553639--7554202 Score: 576
Period size: 109 Copynumber: 5.2 Consensus size: 110
7553629 CAAAGATTTT
* *
7553639 CATGATTTCTAAGACCTCCAAGCATAATTTTGATTCGC-AGTGTTATCCCGATCGA-TTCTTTAT
1 CATGATTTTTAAGACCTCCAGGCATAATTTTGATTCGCGA-TGTTATCCCGATCGATTTC-TTAT
* * * *
7553702 CTTTCGACTTACGGTGTTA-TCCAATCGATTCTGTAAGACCTCCGGG
64 CTTTTGACTTACGATGTTATTCCAGTCGATTCTGTAAGACCTCCGGA
* * *
7553748 CATGATTTTTAAGACCT-CTGAGTATAATTTTGATTCGCGATGTTATCCTGATCGATTT-TT-TC
1 CATGATTTTTAAGACCTCCAG-GCATAATTTTGATTCGCGATGTTATCCCGATCGATTTCTTATC
* * * *
7553810 TTTTCGACTTA-TAGTGTTATCCCAATCGATTCTATAAGACCTCC-GA
65 TTTT-GACTTACGA-TGTTATTCCAGTCGATTCTGTAAGACCTCCGGA
* * * *
7553856 GCATGATTTCTAAGACCTCCAGGCATAATTTTGATTTGCGTTGTTATCCCGATTGATTTCTTATC
1 -CATGATTTTTAAGACCTCCAGGCATAATTTTGATTCGCGATGTTATCCCGATCGATTTCTTATC
* * * *
7553921 TTTTGACTTGCGATGTTATTCCAGTCAATTTTGTAAGACCTCCTGA
65 TTTTGACTTACGATGTTATTCCAGTCGATTCTGTAAGACCTCCGGA
* * * *
7553967 TATAATTTTTAAGACCTCC-GAGCATAATTTTCATTCACGATGTTATCCCGATCGATTTC-TATC
1 CATGATTTTTAAGACCTCCAG-GCATAATTTTGATTCGCGATGTTATCCCGATCGATTTCTTATC
* * * * *
7554030 TTTCGACTTACGGTATTA-TCCAGTCAATTCTGTAAGACCTCCGGG
65 TTTTGACTTACGATGTTATTCCAGTCGATTCTGTAAGACCTCCGGA
* ** ** * * * *
7554075 CATGATTTTTAAAACCTCTGGGCATAATTTCAATTCGTGGTGTTATCCCAATCGATTCCTTATCT
1 CATGATTTTTAAGACCTCCAGGCATAATTTTGATTCGCGATGTTATCCCGATCGATTTCTTATCT
* * *
7554140 TTTGACTTGCGATGTTATCCCAGTCGATTTTGTAAGACCTCC-GA
66 TTTGACTTACGATGTTATTCCAGTCGATTCTGTAAGACCTCCGGA
*
7554184 GCATGATTCTATAAGACCT
1 -CATGATT-TTTAAGACCT
7554203 TTAAGCATGA
Statistics
Matches: 376, Mismatches: 61, Indels: 34
0.80 0.13 0.07
Matches are distributed among these distances:
107 5 0.01
108 85 0.23
109 155 0.41
110 114 0.30
111 17 0.05
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.39
Consensus pattern (110 bp):
CATGATTTTTAAGACCTCCAGGCATAATTTTGATTCGCGATGTTATCCCGATCGATTTCTTATCT
TTTGACTTACGATGTTATTCCAGTCGATTCTGTAAGACCTCCGGA
Found at i:7553993 original size:22 final size:23
Alignment explanation
Indices: 7553947--7553997 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
7553937 TATTCCAGTC
*
7553947 AATTTTGTAAGACCTCCTGATAT
1 AATTTTGTAAGACCTCCTGACAT
7553970 AATTTT-TAAGACCTCC-GAGCAT
1 AATTTTGTAAGACCTCCTGA-CAT
7553992 AATTTT
1 AATTTT
7553998 CATTCACGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 2 0.08
22 18 0.69
23 6 0.23
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (23 bp):
AATTTTGTAAGACCTCCTGACAT
Found at i:7554071 original size:218 final size:218
Alignment explanation
Indices: 7553639--7554182 Score: 691
Period size: 218 Copynumber: 2.5 Consensus size: 218
7553629 CAAAGATTTT
*
7553639 CATGATTTCTAAGACCTCCAAGCATAATTTTGATTCGCAGTGTTATCCCGATCGA-TTCTTTATC
1 CATGATTTCTAAGACCTCCAGGCATAATTTTGATTCGC-GTGTTATCCCGATCGATTTC-TTATC
* * * * * * * *
7553703 TTTCGACTTACGGTGTTA-TCCAATCGATTCTGTAAGACCTCCGGGCATGATTTTTAAGACCTCT
64 TTTTGACTTGCGATGTTATTCCAGTCGATTTTGTAAGACCTCCGGACATAATTTTTAAGACCTCC
* * * * * * *
7553767 GAGTATAATTTTGATTCGCGATGTTATCCTGATCGATTTTTTCTTTTCGACTTATAGTGTTATCC
129 GAGCATAATTTTCATTCACGATGTTATCCCGATCGATTTTATCTTTTCGACTTACAGTATTATCC
*
7553832 CAATCGATTCTATAAGACCTCCGAG
194 CAATCAATTCTATAAGACCTCCGAG
* *
7553857 CATGATTTCTAAGACCTCCAGGCATAATTTTGATTTGCGTTGTTATCCCGATTGATTTCTTATCT
1 CATGATTTCTAAGACCTCCAGGCATAATTTTGATTCGCG-TGTTATCCCGATCGATTTCTTATCT
* * *
7553922 TTTGACTTGCGATGTTATTCCAGTCAATTTTGTAAGACCTCCTGATATAATTTTTAAGACCTCCG
65 TTTGACTTGCGATGTTATTCCAGTCGATTTTGTAAGACCTCCGGACATAATTTTTAAGACCTCCG
*
7553987 AGCATAATTTTCATTCACGATGTTATCCCGATCGATTTCTATC-TTTCGACTTACGGTATTAT-C
130 AGCATAATTTTCATTCACGATGTTATCCCGATCGATTT-TATCTTTTCGACTTACAGTATTATCC
* * *
7554050 CAGTCAATTCTGTAAGACCTCCGGG
194 CAATCAATTCTATAAGACCTCCGAG
* * ** ** * * *
7554075 CATGATTTTTAAAACCTCTGGGCATAATTTCAATTCGTGGTGTTATCCCAATCGATTCCTTATCT
1 CATGATTTCTAAGACCTCCAGGCATAATTTTGATTCG-CGTGTTATCCCGATCGATTTCTTATCT
*
7554140 TTTGACTTGCGATGTTATCCCAGTCGATTTTGTAAGACCTCCG
65 TTTGACTTGCGATGTTATTCCAGTCGATTTTGTAAGACCTCCG
7554183 AGCATGATTC
Statistics
Matches: 281, Mismatches: 40, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
217 1 0.00
218 184 0.65
219 93 0.33
220 3 0.01
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (218 bp):
CATGATTTCTAAGACCTCCAGGCATAATTTTGATTCGCGTGTTATCCCGATCGATTTCTTATCTT
TTGACTTGCGATGTTATTCCAGTCGATTTTGTAAGACCTCCGGACATAATTTTTAAGACCTCCGA
GCATAATTTTCATTCACGATGTTATCCCGATCGATTTTATCTTTTCGACTTACAGTATTATCCCA
ATCAATTCTATAAGACCTCCGAG
Found at i:7554721 original size:3 final size:3
Alignment explanation
Indices: 7554700--7554754 Score: 51
Period size: 3 Copynumber: 19.0 Consensus size: 3
7554690 CATTTCAGTT
* ** * *
7554700 TAA TAT TAA TAA TTT TAA TAA TAA TAA TAA TAA T-T TAA -AA AAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7554746 TAA TAA TAA
1 TAA TAA TAA
7554755 AAAAAAGGAG
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
2 3 0.07
3 38 0.93
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:7554758 original size:19 final size:19
Alignment explanation
Indices: 7554722--7554760 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
7554712 TTTTAATAAT
**
7554722 AATAATAATAATTTAAAAA
1 AATAATAATAATAAAAAAA
7554741 AATAATAATAATAAAAAAA
1 AATAATAATAATAAAAAAA
7554760 A
1 A
7554761 GGAGACAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
AATAATAATAATAAAAAAA
Found at i:7555932 original size:3 final size:3
Alignment explanation
Indices: 7555926--7555952 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
7555916 AAAAATAAAA
7555926 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
7555953 TTTTCTGCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:7556236 original size:15 final size:15
Alignment explanation
Indices: 7556208--7556296 Score: 65
Period size: 15 Copynumber: 5.8 Consensus size: 15
7556198 TAGGTTTCTA
*
7556208 AAACTCCTTAAATCC
1 AAACCCCTTAAATCC
7556223 AAACCCC-TATAATCC
1 AAACCCCTTA-AATCC
*
7556238 AAAATCCCTTAAATCC
1 -AAACCCCTTAAATCC
**
7556254 AAA-CCCTTAAAATTTG
1 AAACCCCTT-AAA-TCC
* *
7556270 AAACCCCTAAAATTC
1 AAACCCCTTAAATCC
*
7556285 AAAACCCTTAAA
1 AAACCCCTTAAA
7556297 ATCCGAAATC
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
14 7 0.12
15 29 0.48
16 18 0.30
17 6 0.10
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.24
Consensus pattern (15 bp):
AAACCCCTTAAATCC
Found at i:7556252 original size:16 final size:14
Alignment explanation
Indices: 7556208--7556264 Score: 69
Period size: 14 Copynumber: 3.8 Consensus size: 14
7556198 TAGGTTTCTA
7556208 AAACTCCTTAAATCC
1 AAAC-CCTTAAATCC
*
7556223 AAACCCCTATAATCC
1 AAACCCTTA-AATCC
7556238 AAAATCCCTTAAATCC
1 -AAA-CCCTTAAATCC
7556254 AAACCCTTAAA
1 AAACCCTTAAA
7556265 ATTTGAAACC
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
14 12 0.32
15 12 0.32
16 8 0.22
17 5 0.14
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.23
Consensus pattern (14 bp):
AAACCCTTAAATCC
Found at i:7556273 original size:16 final size:16
Alignment explanation
Indices: 7556223--7556298 Score: 66
Period size: 16 Copynumber: 4.8 Consensus size: 16
7556213 CCTTAAATCC
* * *
7556223 AAACCCCTATAATCCA
1 AAACCCTTAAAATTCA
*
7556239 AAATCCCTT-AAA-TCC
1 AAA-CCCTTAAAATTCA
**
7556254 AAACCCTTAAAATTTG
1 AAACCCTTAAAATTCA
*
7556270 AAACCCCTAAAATTCA
1 AAACCCTTAAAATTCA
7556286 AAACCCTTAAAAT
1 AAACCCTTAAAAT
7556299 CCGAAATCCT
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
14 5 0.11
15 7 0.15
16 31 0.66
17 4 0.09
ACGTcount: A:0.46, C:0.29, G:0.01, T:0.24
Consensus pattern (16 bp):
AAACCCTTAAAATTCA
Found at i:7556274 original size:47 final size:43
Alignment explanation
Indices: 7556223--7556355 Score: 124
Period size: 47 Copynumber: 2.9 Consensus size: 43
7556213 CCTTAAATCC
7556223 AAACCCCTATAATCCAAAATCCCTTAAATCCAAACCCTTAAA-ATTT
1 AAACCCCTA-AAT-CAAAA-CCCTTAAATCCAAACCC-TAAACATTT
* *
7556269 GAAACCCCTAAAATTCAAAACCCTTAAAATCCGAAATCCTAAACCTTT
1 -AAACCCCT-AAA-TCAAAACCCTT-AAATCC-AAACCCTAAACATTT
* * * *
7556317 AAACTCCTAAATCTAAACCCTTAAATCAAAACCCCAAAC
1 AAACCCCTAAATCAAAACCCTTAAATCCAAACCCTAAAC
7556356 CTCAAATTTA
Statistics
Matches: 74, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
43 9 0.12
44 5 0.07
45 10 0.14
46 8 0.11
47 32 0.43
48 10 0.14
ACGTcount: A:0.45, C:0.31, G:0.02, T:0.23
Consensus pattern (43 bp):
AAACCCCTAAATCAAAACCCTTAAATCCAAACCCTAAACATTT
Found at i:7556305 original size:23 final size:23
Alignment explanation
Indices: 7556279--7556341 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 23
7556269 GAAACCCCTA
*
7556279 AAATTCAAAACCCTTAAAATCCG
1 AAATTCTAAACCCTTAAAATCCG
* * * *
7556302 AAATCCTAAACCTTTAAACTCCT
1 AAATTCTAAACCCTTAAAATCCG
7556325 AAA-TCTAAACCCTTAAA
1 AAATTCTAAACCCTTAAA
7556342 TCAAAACCCC
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
22 12 0.36
23 21 0.64
ACGTcount: A:0.46, C:0.27, G:0.02, T:0.25
Consensus pattern (23 bp):
AAATTCTAAACCCTTAAAATCCG
Found at i:7556332 original size:22 final size:23
Alignment explanation
Indices: 7556286--7556341 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
7556276 CTAAAATTCA
7556286 AAACCCTTAAAATCCGAAATCCT
1 AAACCCTTAAAATCCGAAATCCT
* * *
7556309 AAACCTTTAAACTCCTAAAT-CT
1 AAACCCTTAAAATCCGAAATCCT
7556331 AAACCCTTAAA
1 AAACCCTTAAA
7556342 TCAAAACCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 12 0.41
23 17 0.59
ACGTcount: A:0.45, C:0.29, G:0.02, T:0.25
Consensus pattern (23 bp):
AAACCCTTAAAATCCGAAATCCT
Found at i:7556455 original size:29 final size:28
Alignment explanation
Indices: 7556388--7556464 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 28
7556378 CTAAAATCTT
* * *
7556388 AAAACTCTAAAATCAAAACCCTAAACCTTC
1 AAAACT-TAAAA-CCAAACACTAAACCCTC
*
7556418 AATACCTTAAAACCAAACACTAGAACCCTC
1 AA-AACTTAAAACCAAACACTA-AACCCTC
*
7556448 AAAACTTAAATCCAAAC
1 AAAACTTAAAACCAAAC
7556465 TCTTAAAATC
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
29 21 0.54
30 15 0.38
31 3 0.08
ACGTcount: A:0.51, C:0.30, G:0.01, T:0.18
Consensus pattern (28 bp):
AAAACTTAAAACCAAACACTAAACCCTC
Found at i:7558174 original size:16 final size:15
Alignment explanation
Indices: 7558151--7558180 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7558141 CTTGAGTCAT
7558151 TTTATTTTATTTTAA
1 TTTATTTTATTTTAA
7558166 TTTATTTTTATTTTA
1 TTTA-TTTTATTTTA
7558181 TATATATTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTATTTTATTTTAA
Found at i:7563072 original size:17 final size:18
Alignment explanation
Indices: 7563052--7563085 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
7563042 GATGGGGCAT
7563052 CAAAAAAA-AAAAAAAAG
1 CAAAAAAAGAAAAAAAAG
7563069 CAAAAAAAGAAAAAAAA
1 CAAAAAAAGAAAAAAAA
7563086 AAAAGGACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.88, C:0.06, G:0.06, T:0.00
Consensus pattern (18 bp):
CAAAAAAAGAAAAAAAAG
Found at i:7565271 original size:87 final size:87
Alignment explanation
Indices: 7565092--7565288 Score: 234
Period size: 87 Copynumber: 2.3 Consensus size: 87
7565082 TCATGATTTC
* * * * *
7565092 TAAGACCTCCGGACGTAATTTCGATTCACGGTGTTATCCCGATCGATTCATTATCTTTCGACTTG
1 TAAGACCTCCGGGCATAATTTCGATTCACGATGTTATCCCGATCAATT-ATTATCTTTCGACTTA
* * *
7565157 TGGTGTTATCATAGTCGATTCTG
65 CGGTGTTATCACAGTCGATTCTA
* * * *
7565180 TAAGACCTCCGGGCATAATTTCGATTCGCTATGTTATCCTGATCAATT-TTTTCTCTTCGACTTA
1 TAAGACCTCCGGGCATAATTTCGATTCACGATGTTATCCCGATCAATTATTATCT-TTCGACTTA
*
7565244 CGGTGTTATCCCAGTCGATTCTA
65 CGGTGTTATCACAGTCGATTCTA
* *
7565267 TAAGACCTCCGAGCATGATTTC
1 TAAGACCTCCGGGCATAATTTC
7565289 TAGGACCTCT
Statistics
Matches: 93, Mismatches: 15, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
86 5 0.05
87 47 0.51
88 41 0.44
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.37
Consensus pattern (87 bp):
TAAGACCTCCGGGCATAATTTCGATTCACGATGTTATCCCGATCAATTATTATCTTTCGACTTAC
GGTGTTATCACAGTCGATTCTA
Found at i:7565394 original size:110 final size:109
Alignment explanation
Indices: 7565180--7565614 Score: 441
Period size: 110 Copynumber: 4.0 Consensus size: 109
7565170 GTCGATTCTG
** * * * * *
7565180 TAAGACCTCCGGGCATAATTTCGATTCGCTATGTTATCCTGATCAATTTTT-TCTCTTCGACTTA
1 TAAGACCTCCAAGCATAATTTCAATTCGCGATGTTATCCCGATCGATTTTTATCT-TTCGACTTG
* * * *
7565244 CGGTGTTATCCCAGTCGATTCTATAAGACCTCC-GAGCATGATTTC
65 CAGTGTTATCCCAGTCGATTTTGTAAGACCTCCGGA-CATGATTTT
* * *
7565289 TAGGACCTCTAAGCATAATTTCAATTCGCGATGTTATCCCGATCGATTCTTTATCTTTTGACTTG
1 TAAGACCTCCAAGCATAATTTCAATTCGCGATGTTATCCCGATCGATT-TTTATCTTTCGACTTG
* *
7565354 CAGTGTTATCCTAGTCGATTTTGTAAAACCTCCGGACATGATTTT
65 CAGTGTTATCCCAGTCGATTTTGTAAGACCTCCGGACATGATTTT
** * * * * *
7565399 TAAGACCTCCACTCACAATTTCAATTTGCGATGTTATCCCGATCGATTTCTATCTTTCAACTT-A
1 TAAGACCTCCAAGCATAATTTCAATTCGCGATGTTATCCCGATCGATTTTTATCTTTCGACTTGC
* * *
7565463 AGGTATTAT-CCAATCGATTTTGTAAGACCTCCGGGCATGATTTT
66 A-GTGTTATCCCAGTCGATTTTGTAAGACCTCCGGACATGATTTT
** * * * * * * *
7565507 TAAGACCTCCGGGTATAATTTCGATTCGTGATATTATCCAGATCGATTCCTTATCTTTTGACTTG
1 TAAGACCTCCAAGCATAATTTCAATTCGCGATGTTATCCCGATCGATT-TTTATCTTTCGACTTG
*
7565572 C-GATGTTATCCCAGTAGATTTTGTAAGACCTCCAGG-CATGATT
65 CAG-TGTTATCCCAGTCGATTTTGTAAGACCTCC-GGACATGATT
7565615 CTGTAACACC
Statistics
Matches: 268, Mismatches: 49, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
108 71 0.26
109 74 0.28
110 116 0.43
111 7 0.03
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.37
Consensus pattern (109 bp):
TAAGACCTCCAAGCATAATTTCAATTCGCGATGTTATCCCGATCGATTTTTATCTTTCGACTTGC
AGTGTTATCCCAGTCGATTTTGTAAGACCTCCGGACATGATTTT
Found at i:7565527 original size:22 final size:23
Alignment explanation
Indices: 7565479--7565527 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
7565469 TATCCAATCG
*
7565479 ATTTTGTAAGACCTCCGGGCATG
1 ATTTTGTAAGACCTCCGGGCATA
*
7565502 ATTTT-TAAGACCTCCGGGTATA
1 ATTTTGTAAGACCTCCGGGCATA
7565524 ATTT
1 ATTT
7565528 CGATTCGTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.37
Consensus pattern (23 bp):
ATTTTGTAAGACCTCCGGGCATA
Found at i:7565564 original size:218 final size:219
Alignment explanation
Indices: 7565196--7565614 Score: 540
Period size: 218 Copynumber: 1.9 Consensus size: 219
7565186 CTCCGGGCAT
* * * * * * * *
7565196 AATTTCGATTCGCTATGTTATCCTGATCAATTTTTTCTCTTCGACTTACGGTGTTATCCCAGTCG
1 AATTTCAATTCGCGATGTTATCCCGATCAATTTTATCTCTTCAACTTAAGGTATTATCCCAATCG
* * *
7565261 ATTCTATAAGACCTCCGAGCATGATTTCTAGGACCTCTAAGCATAATTTCAATTCGCGATGTTAT
66 ATTCTATAAGACCTCCGAGCATGATTTCTAAGACCTCCAAGCATAATTTCAATTCGCGATATTAT
* * * *
7565326 CCCGATCGATTCTTTATCTTTTGACTTGC-AGTGTTATCCTAGTCGATTTTGTAAAACCTCC-GG
131 CCAGATCGATTCCTTATCTTTTGACTTGCGA-TGTTATCCCAGTAGATTTTGTAAAACCTCCAGG
7565389 ACATGATTTTTAAGACCTCCACTCAC
195 -CATGATTTTTAAGACCTCCACTCAC
* *
7565415 AATTTCAATTTGCGATGTTATCCCGATCGATTTCTATCT-TTCAACTTAAGGTATTAT-CCAATC
1 AATTTCAATTCGCGATGTTATCCCGATCAATTT-TATCTCTTCAACTTAAGGTATTATCCCAATC
* * * * ** * * *
7565478 GATTTTGTAAGACCTCCGGGCATGATTTTTAAGACCTCCGGGTATAATTTCGATTCGTGATATTA
65 GATTCTATAAGACCTCCGAGCATGATTTCTAAGACCTCCAAGCATAATTTCAATTCGCGATATTA
*
7565543 TCCAGATCGATTCCTTATCTTTTGACTTGCGATGTTATCCCAGTAGATTTTGTAAGACCTCCAGG
130 TCCAGATCGATTCCTTATCTTTTGACTTGCGATGTTATCCCAGTAGATTTTGTAAAACCTCCAGG
7565608 CATGATT
195 CATGATT
7565615 CTGTAACACC
Statistics
Matches: 170, Mismatches: 27, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
218 120 0.71
219 46 0.27
220 4 0.02
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (219 bp):
AATTTCAATTCGCGATGTTATCCCGATCAATTTTATCTCTTCAACTTAAGGTATTATCCCAATCG
ATTCTATAAGACCTCCGAGCATGATTTCTAAGACCTCCAAGCATAATTTCAATTCGCGATATTAT
CCAGATCGATTCCTTATCTTTTGACTTGCGATGTTATCCCAGTAGATTTTGTAAAACCTCCAGGC
ATGATTTTTAAGACCTCCACTCAC
Found at i:7565614 original size:23 final size:23
Alignment explanation
Indices: 7565588--7565648 Score: 79
Period size: 23 Copynumber: 2.7 Consensus size: 23
7565578 TATCCCAGTA
7565588 GATTTTGTAAGACCTCCAGGCAT
1 GATTTTGTAAGACCTCCAGGCAT
* * *
7565611 GATTCTGTAACACCTCCGGGCAT
1 GATTTTGTAAGACCTCCAGGCAT
*
7565634 GA-TTTCTAAGACCTC
1 GATTTTGTAAGACCTC
7565649 TGGGCGTAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.31
23 22 0.69
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.30
Consensus pattern (23 bp):
GATTTTGTAAGACCTCCAGGCAT
Found at i:7565730 original size:133 final size:133
Alignment explanation
Indices: 7565478--7565747 Score: 336
Period size: 133 Copynumber: 2.0 Consensus size: 133
7565468 TTATCCAATC
* * * *
7565478 GATTTTGTAAGACCTCCGGGCATGATTTTTAAGACCTCCGGGTATAATTTCGATTCGTGATATTA
1 GATTCTGTAACACCTCCGGGCATGATTTCTAAGACCTCCGGGTATAATTTCGATTCGCGATATTA
* *
7565543 TCCAGATCGATTCCTTATCTTTTGACTTGCGATGTTATCCCAGTAGATTTTGTAAGACCTCC-AG
66 TCCAGATCGATTCCTTATCTTTTGACTTACGATGTTATCCCAGTAGATTCTGTAAGACCTCCGA-
7565607 GCAT
130 GCAT
* *
7565611 GATTCTGTAACACCTCCGGGCATGATTTCTAAGACCTCTGGGCGTA-AATTT-GATTGGCGATAT
1 GATTCTGTAACACCTCCGGGCATGATTTCTAAGACCTC-CGG-GTATAATTTCGATTCGCGATAT
* * * *
7565674 TATCCTA-ATCGATT-CTTGATTTTTTGATTTACGGTGTTGTCCCAGTTA-ATTCTGTAAGACCT
64 TATCC-AGATCGATTCCTT-ATCTTTTGACTTACGATGTTATCCCAG-TAGATTCTGTAAGACCT
7565736 CCGAGCAT
126 CCGAGCAT
7565744 GATT
1 GATT
7565748 TCTAAGGCCT
Statistics
Matches: 119, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
132 3 0.03
133 102 0.86
134 11 0.09
135 3 0.03
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.37
Consensus pattern (133 bp):
GATTCTGTAACACCTCCGGGCATGATTTCTAAGACCTCCGGGTATAATTTCGATTCGCGATATTA
TCCAGATCGATTCCTTATCTTTTGACTTACGATGTTATCCCAGTAGATTCTGTAAGACCTCCGAG
CAT
Found at i:7565806 original size:110 final size:109
Alignment explanation
Indices: 7565612--7565855 Score: 283
Period size: 110 Copynumber: 2.2 Consensus size: 109
7565602 TCCAGGCATG
* * * * * *
7565612 ATTCTGTAACACCTCCGGGCATGATTTCTAAGACCTCTGGGCGTAAATTTGATTGGCGATATTAT
1 ATTCTGTAACACCTCCGAGCATGATTTCTAAGACCTCCGAGCATAAATTCGATTCGCGATATTAT
* * *
7565677 CCTAATCGATTCTTGATTTTTTGATTTACGGTGTTGTCCCAGTTA
66 CCCAATCGATTCTTGA-TTTTTGACTTACAGTGTTGTCCCAGTTA
* * *
7565722 ATTCTGTAAGACCTCCGAGCATGATTTCTAAGGCCTCCGAGCATAAATTCGATTCGCGATGTTAT
1 ATTCTGTAACACCTCCGAGCATGATTTCTAAGACCTCCGAGCATAAATTCGATTCGCGATATTAT
* * ** **
7565787 CCCGATCGATTCATT-ATTTTTGACTTACAGTGTTATCCTGGTCG
66 CCCAATCGATTC-TTGATTTTTGACTTACAGTGTTGTCCCAGTTA
* *
7565831 ATTCTGTAACACCTTCGGGCATGAT
1 ATTCTGTAACACCTCCGAGCATGAT
7565856 GCTTAAGACC
Statistics
Matches: 112, Mismatches: 21, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
109 43 0.38
110 67 0.60
111 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (109 bp):
ATTCTGTAACACCTCCGAGCATGATTTCTAAGACCTCCGAGCATAAATTCGATTCGCGATATTAT
CCCAATCGATTCTTGATTTTTGACTTACAGTGTTGTCCCAGTTA
Found at i:7565875 original size:22 final size:22
Alignment explanation
Indices: 7565841--7565888 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
7565831 ATTCTGTAAC
* *
7565841 ACCTTCGGGCATGATGCTTAAG
1 ACCTTCAGACATGATGCTTAAG
**
7565863 ACCTTCAGACATGATTTTTAAG
1 ACCTTCAGACATGATGCTTAAG
7565885 ACCT
1 ACCT
7565889 CTAAGCATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (22 bp):
ACCTTCAGACATGATGCTTAAG
Found at i:7566145 original size:12 final size:12
Alignment explanation
Indices: 7566128--7566160 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
7566118 AGTTTAATAT
7566128 TAATAATTTTAA
1 TAATAATTTTAA
*
7566140 TAATAATATTAA
1 TAATAATTTTAA
7566152 TAATAATTT
1 TAATAATTT
7566161 AAAAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
TAATAATTTTAA
Found at i:7566147 original size:21 final size:21
Alignment explanation
Indices: 7566122--7566177 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
7566112 CATTTCAGTT
7566122 TAATATTAATAAT-TTTAATAA
1 TAATATTAATAATATTTAA-AA
7566143 TAATATTAATAATAATTTAAAA
1 TAATATTAATAAT-ATTTAAAA
*
7566165 AAATA-TAATAATA
1 TAATATTAATAATA
7566178 AAAAAAGAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
20 1 0.03
21 20 0.62
22 6 0.19
23 5 0.16
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TAATATTAATAATATTTAAAA
Found at i:7567174 original size:8 final size:8
Alignment explanation
Indices: 7567161--7567239 Score: 59
Period size: 8 Copynumber: 9.2 Consensus size: 8
7567151 GCAAAAAAAT
7567161 TTTTTTTA
1 TTTTTTTA
7567169 TTTTTTTA
1 TTTTTTTA
7567177 TTTTTTTAAA
1 TTTTTTT--A
**
7567187 TTTTCTAAA
1 TTTT-TTTA
7567196 TTTTTTTA
1 TTTTTTTA
* *
7567204 TATTATTA
1 TTTTTTTA
7567212 TTTTTGTTA
1 TTTTT-TTA
**
7567221 TTTTGAGTA
1 TTTT-TTTA
7567230 TTTTTTTA
1 TTTTTTTA
7567238 TT
1 TT
7567240 CTTGCATAAT
Statistics
Matches: 54, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
8 30 0.56
9 18 0.33
10 5 0.09
11 1 0.02
ACGTcount: A:0.20, C:0.01, G:0.04, T:0.75
Consensus pattern (8 bp):
TTTTTTTA
Found at i:7567667 original size:31 final size:31
Alignment explanation
Indices: 7567625--7567731 Score: 133
Period size: 31 Copynumber: 3.4 Consensus size: 31
7567615 TTAGGTTTCT
* * *
7567625 AAAACTCCTTAAATTCAAACCCCTAAAATCC
1 AAAACCCCTTAAATCCAAACCCCTAAAATTC
* * *
7567656 AAAATCCCTTAAATCCAAACCCTTCAAATTC
1 AAAACCCCTTAAATCCAAACCCCTAAAATTC
* *
7567687 GAAACCCCTCAAATCCAAAACCCCTAAAATTC
1 AAAACCCCTTAAATCC-AAACCCCTAAAATTC
7567719 AAAACCCCTTAAA
1 AAAACCCCTTAAA
7567732 ATTCGAAATC
Statistics
Matches: 62, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
31 38 0.61
32 24 0.39
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.21
Consensus pattern (31 bp):
AAAACCCCTTAAATCCAAACCCCTAAAATTC
Found at i:7567669 original size:16 final size:16
Alignment explanation
Indices: 7567625--7567731 Score: 103
Period size: 16 Copynumber: 6.8 Consensus size: 16
7567615 TTAGGTTTCT
* *
7567625 AAAACTCCTTAAATTC
1 AAAACCCCTTAAATCC
*
7567641 -AAACCCCTAAAATCC
1 AAAACCCCTTAAATCC
*
7567656 AAAATCCCTTAAATCC
1 AAAACCCCTTAAATCC
*
7567672 -AAA-CCCTTCAAATTC
1 AAAACCCCTT-AAATCC
* *
7567687 GAAACCCCTCAAATCC
1 AAAACCCCTTAAATCC
* *
7567703 AAAACCCCTAAAATTC
1 AAAACCCCTTAAATCC
7567719 AAAACCCCTTAAA
1 AAAACCCCTTAAA
7567732 ATTCGAAATC
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
14 5 0.07
15 20 0.27
16 46 0.61
17 4 0.05
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.21
Consensus pattern (16 bp):
AAAACCCCTTAAATCC
Found at i:7567767 original size:22 final size:22
Alignment explanation
Indices: 7567737--7567798 Score: 106
Period size: 22 Copynumber: 2.8 Consensus size: 22
7567727 TTAAAATTCG
*
7567737 AAATCCCAAACCTTTAAACTCTT
1 AAAT-CCAAACCCTTAAACTCTT
7567760 AAATCCAAACCCTTAAACTCTT
1 AAATCCAAACCCTTAAACTCTT
7567782 AAATCCAAACCCTTAAA
1 AAATCCAAACCCTTAAA
7567799 TCAAAGCCCC
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
22 34 0.89
23 4 0.11
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.26
Consensus pattern (22 bp):
AAATCCAAACCCTTAAACTCTT
Found at i:7567849 original size:58 final size:59
Alignment explanation
Indices: 7567787--7567899 Score: 140
Period size: 58 Copynumber: 1.9 Consensus size: 59
7567777 CTCTTAAATC
* * **
7567787 CAAACCCTTAAATCAAAGCCCCAAACC-T-CAAATTTTAAAACCGAAACCCTAAAATTTT
1 CAAACCCTAAAATCAAAACCCCAAACCTTCCAAACCTTAAAACC-AAACCCTAAAATTTT
* * *
7567845 CAAACTCTAAAATCAAAACCCTAAACCTTCCATACCTTAAAACCAAACCCTAAAA
1 CAAACCCTAAAATCAAAACCCCAAACCTTCCAAACCTTAAAACCAAACCCTAAAA
7567900 CCCTCAAAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
58 23 0.50
59 12 0.26
60 11 0.24
ACGTcount: A:0.47, C:0.31, G:0.02, T:0.20
Consensus pattern (59 bp):
CAAACCCTAAAATCAAAACCCCAAACCTTCCAAACCTTAAAACCAAACCCTAAAATTTT
Found at i:7567901 original size:30 final size:28
Alignment explanation
Indices: 7567821--7567929 Score: 94
Period size: 30 Copynumber: 3.7 Consensus size: 28
7567811 ACCTCAAATT
**
7567821 TTAAAACCGAAACCCTAAAATTTTCAAAC
1 TTAAAACC-AAACCCTAAAACCTTCAAAC
* *
7567850 TCTAAAATCAAAACCCT-AAACCTTCCATACC
1 T-TAAAA-CCAAACCCTAAAACCTT-CA-AAC
*
7567881 TTAAAACCAAACCCTAAAACCCTCAAAAC
1 TTAAAACCAAACCCTAAAACCTTC-AAAC
*
7567910 TTAAATCCAAACCCTTAAAA
1 TTAAAACCAAACCC-TAAAA
7567930 TCCGAATCTT
Statistics
Matches: 65, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
29 30 0.46
30 31 0.48
31 4 0.06
ACGTcount: A:0.48, C:0.30, G:0.01, T:0.21
Consensus pattern (28 bp):
TTAAAACCAAACCCTAAAACCTTCAAAC
Found at i:7567912 original size:29 final size:29
Alignment explanation
Indices: 7567812--7567929 Score: 87
Period size: 29 Copynumber: 4.0 Consensus size: 29
7567802 AAGCCCCAAA
** *
7567812 CCTCAAATTTTAAAACCGAAACCCTAAAAT
1 CCTCAAAACTTAAAACC-AAACCCTAAAAC
** *
7567842 TTTC-AAACTCTAAAATCAAAACCCT-AAAC
1 CCTCAAAACT-TAAAA-CCAAACCCTAAAAC
* * *
7567871 CTTCCATACCTTAAAACCAAACCCTAAAAC
1 CCT-CAAAACTTAAAACCAAACCCTAAAAC
*
7567901 CCTCAAAACTTAAATCCAAACCCTTAAAA
1 CCTCAAAACTTAAAACCAAACCC-TAAAA
7567930 TCCGAATCTT
Statistics
Matches: 68, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
29 33 0.49
30 31 0.46
31 4 0.06
ACGTcount: A:0.47, C:0.31, G:0.01, T:0.22
Consensus pattern (29 bp):
CCTCAAAACTTAAAACCAAACCCTAAAAC
Found at i:7573914 original size:12 final size:11
Alignment explanation
Indices: 7573897--7573926 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7573887 AAGTAACTTT
7573897 AAAAAAAAAAC
1 AAAAAAAAAAC
*
7573908 AAAAAAAAAAG
1 AAAAAAAAAAC
7573919 AAAAAAAA
1 AAAAAAAA
7573927 GTTTTCTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.93, C:0.03, G:0.03, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:7576696 original size:22 final size:22
Alignment explanation
Indices: 7576671--7576714 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
7576661 GTCGATTCTG
* * *
7576671 TAAGACCTTCGGGCATGATTTT
1 TAAGACCTCCGAGCATAATTTT
7576693 TAAGACCTCCGAGCATAATTTT
1 TAAGACCTCCGAGCATAATTTT
7576715 GATTCATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.34
Consensus pattern (22 bp):
TAAGACCTCCGAGCATAATTTT
Found at i:7576732 original size:110 final size:109
Alignment explanation
Indices: 7576574--7577137 Score: 595
Period size: 110 Copynumber: 5.2 Consensus size: 109
7576564 CAAAGATTTT
* * * * * *
7576574 CATGATTTCTAAGACCTCCAAGCGTAATTTCGATTTACGGTGTTATCCTGATCGATTCCTTATTT
1 CATGATTTTTAAGACCTCC-AGCATAATTTTGATTCATGGTGTTATCCTGATCGATTCCTTATCT
*
7576639 TTTGACTTACGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGGG
65 TTTGACTTACGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGAG
* * *
7576684 CATGATTTTTAAGACCTCCGAGCATAATTTTGATTCATGATGTTATCCTAATCGATTTC-T-TCT
1 CATGATTTTTAAGACCTCC-AGCATAATTTTGATTCATGGTGTTATCCTGATCGATTCCTTATCT
* * * *
7576747 TTTGACTTACGGTGTTATCCCGGTTGATTCTATAAGACCTCCG-G
65 TTTGACTTACGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGAG
*
7576791 ACATGATTTTTAAGACCTCCAGGCATAATTTTGATTCGTGGTGTTAT-CTCGATCGATTCCTTAT
1 -CATGATTTTTAAGACCTCCA-GCATAATTTTGATTCATGGTGTTATCCT-GATCGATTCCTTAT
** * * * * * *
7576855 CTTTCAACTTATGCTGTTATCCTAATAGATTTTGTAAGACCTTCGAG
63 CTTTTGACTTACGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGAG
* *** * * *
7576902 CATGATTTTTAAAACCTTTGGGTATAATTTTGATTCATGGTGTTATACC-AATTGATT-CTTATC
1 CATGATTTTTAAGACC-TCCAGCATAATTTTGATTCATGGTGTTAT-CCTGATCGATTCCTTATC
* ** * * * *
7576965 TTTCGACTTGTGGTGTT-TTCCAGTCAATTCTGTAAAACCTCCGAG
64 TTTTGACTTACGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGAG
* * * *
7577010 AATGATTTTTAAGACCTCCAGACATAATTTCGATTCGTGGTGTTATCCCGATCGATTCCTTATCT
1 CATGATTTTTAAGACCTCCAG-CATAATTTTGATTCATGGTGTTATCCTGATCGATTCCTTATCT
*
7577075 TTTGACTTGA-GATGTTATCCCAGTCGATTCTGTAAGACCTTCGAG
65 TTTGACTT-ACGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGAG
*
7577120 CATGATTCTGTAAGACCT
1 CATGATT-TTTAAGACCT
7577138 TCGGGTATGA
Statistics
Matches: 372, Mismatches: 67, Indels: 29
0.79 0.14 0.06
Matches are distributed among these distances:
107 8 0.02
108 152 0.41
109 41 0.11
110 159 0.43
111 11 0.03
112 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (109 bp):
CATGATTTTTAAGACCTCCAGCATAATTTTGATTCATGGTGTTATCCTGATCGATTCCTTATCTT
TTGACTTACGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGAG
Found at i:7576821 original size:22 final size:22
Alignment explanation
Indices: 7576779--7576822 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7576769 GTTGATTCTA
*
7576779 TAAGACCTCCGGACATGATTTT
1 TAAGACCTCCGGACATAATTTT
7576801 TAAGACCTCCAGG-CATAATTTT
1 TAAGACCTCC-GGACATAATTTT
7576823 GATTCGTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (22 bp):
TAAGACCTCCGGACATAATTTT
Found at i:7577007 original size:218 final size:217
Alignment explanation
Indices: 7576574--7577150 Score: 705
Period size: 218 Copynumber: 2.6 Consensus size: 217
7576564 CAAAGATTTT
* * * *** *
7576574 CATGATTTCTAAGACCTCCAAGCGTAATTTCGATTTACGGTGTTATCCTGATCGATTCCTTATTT
1 CATGATTTTTAAGACCTCCAGGCATAATTTCGATTCGTGGTGTTATCC-GATCGATTCCTTATCT
* * *
7576639 TTTGACTTACGGTGTTATCCCAGTCGATTCTGTAAGACCTTCGGGCATGATTTTTAAGACCTCCG
65 TTTGACTTA-GATGTTATCCCAGTCGATTCTGTAAGACCTTCGAGCATGATTTTTAAGACCTTCG
* * * *
7576704 AGCATAATTTTGATTCATGATGTTATCCTAATCGATTTCTTCTTTTGACTTACGGTGTTATCCCG
129 GGTATAATTTTGATTCATGATGTTATCCTAATCGATTTCTTCTTTCGACTTACGGTGTTATCCCA
** *
7576769 GTTGATTCTATAAGACCTCCG-GA
194 GTCAATTCTATAAAACCTCCGAGA
*
7576792 CATGATTTTTAAGACCTCCAGGCATAATTTTGATTCGTGGTGTTATCTCGATCGATTCCTTATCT
1 CATGATTTTTAAGACCTCCAGGCATAATTTCGATTCGTGGTGTTATC-CGATCGATTCCTTATCT
** * * * * * * *
7576857 TTCAACTTATGCTGTTATCCTAATAGATTTTGTAAGACCTTCGAGCATGATTTTTAAAACCTTTG
65 TTTGACTTA-GATGTTATCCCAGTCGATTCTGTAAGACCTTCGAGCATGATTTTTAAGACCTTCG
* * ** *
7576922 GGTATAATTTTGATTCATGGTGTTATACC-AATTGA-TTCTTATCTTTCGACTTGTGGTGTT-TT
129 GGTATAATTTTGATTCATGATGTTAT-CCTAATCGATTTC-T-TCTTTCGACTTACGGTGTTATC
*
7576984 CCAGTCAATTCTGTAAAACCTCCGAGA
191 CCAGTCAATTCTATAAAACCTCCGAGA
*
7577011 -ATGATTTTTAAGACCTCCAGACATAATTTCGATTCGTGGTGTTATCCCGATCGATTCCTTATCT
1 CATGATTTTTAAGACCTCCAGGCATAATTTCGATTCGTGGTGTTAT-CCGATCGATTCCTTATCT
*
7577075 TTTGACTTGAGATGTTATCCCAGTCGATTCTGTAAGACCTTCGAGCATGATTCTGTAAGACCTTC
65 TTTGACTT-AGATGTTATCCCAGTCGATTCTGTAAGACCTTCGAGCATGATT-TTTAAGACCTTC
*
7577140 GGGTATGATTT
128 GGGTATAATTT
7577151 CTAAGACCTC
Statistics
Matches: 305, Mismatches: 46, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
217 3 0.01
218 260 0.85
219 42 0.14
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.40
Consensus pattern (217 bp):
CATGATTTTTAAGACCTCCAGGCATAATTTCGATTCGTGGTGTTATCCGATCGATTCCTTATCTT
TTGACTTAGATGTTATCCCAGTCGATTCTGTAAGACCTTCGAGCATGATTTTTAAGACCTTCGGG
TATAATTTTGATTCATGATGTTATCCTAATCGATTTCTTCTTTCGACTTACGGTGTTATCCCAGT
CAATTCTATAAAACCTCCGAGA
Found at i:7577130 original size:23 final size:23
Alignment explanation
Indices: 7577100--7577159 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
7577090 TATCCCAGTC
7577100 GATTCTGTAAGACCTTCGAGCAT
1 GATTCTGTAAGACCTTCGAGCAT
* *
7577123 GATTCTGTAAGACCTTCGGGTAT
1 GATTCTGTAAGACCTTCGAGCAT
*
7577146 GATT-TCTAAGACCT
1 GATTCTGTAAGACCT
7577160 CTAGGCATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 9 0.26
23 25 0.74
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (23 bp):
GATTCTGTAAGACCTTCGAGCAT
Found at i:7577237 original size:133 final size:133
Alignment explanation
Indices: 7576991--7577259 Score: 310
Period size: 133 Copynumber: 2.0 Consensus size: 133
7576981 TTTCCAGTCA
* * *
7576991 ATTCTGTAAAACCTCCGAGAATGATTTTTAAGACCTCCAGACATAATTTCGATTCGTGGTGTTAT
1 ATTCTGTAAAACCTCCGAGAATGATTTCTAAGACCTCCAGACATAATTTCGATTCGCGATGTTAT
**
7577056 CCCGATCGATTCCTTATCTTTTGACTTGAGATGTTATCCCAGTCGATTCTGTAAGACCTTCGAGC
66 CCCGATCGATTCCTTATCTTTTGACTTGAGATGTTATAACAGTCGATTCTGTAAGACCTTCGAGC
7577121 ATG
131 ATG
* * * * * *
7577124 ATTCTGTAAGACCTTCGGGTATGATTTCTAAGACCTCTAGGCATAAATTT-GATTCGCGATGTTA
1 ATTCTGTAAAACCTCCGAGAATGATTTCTAAGACCTCCAGACAT-AATTTCGATTCGCGATGTTA
* * * * * * * *
7577188 TCCTGATTGATT-CTTGATTTTTTGA-TTTACGGTGTTGTAACAGTTGATTCTGTAAGACCTTTG
65 TCCCGATCGATTCCTT-ATCTTTTGACTTGA-GATGTTATAACAGTCGATTCTGTAAGACCTTCG
*
7577251 GGCATG
128 AGCATG
7577257 ATT
1 ATT
7577260 TCTAAGGCCT
Statistics
Matches: 113, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
132 6 0.05
133 102 0.90
134 5 0.04
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (133 bp):
ATTCTGTAAAACCTCCGAGAATGATTTCTAAGACCTCCAGACATAATTTCGATTCGCGATGTTAT
CCCGATCGATTCCTTATCTTTTGACTTGAGATGTTATAACAGTCGATTCTGTAAGACCTTCGAGC
ATG
Found at i:7577366 original size:109 final size:111
Alignment explanation
Indices: 7577123--7577378 Score: 310
Period size: 110 Copynumber: 2.3 Consensus size: 111
7577113 CTTCGAGCAT
* * * *
7577123 GATTCTGTAAGACCTTC-GGGTATGATTTCTAAGACCTCTAGGCATAAATTTGATTCGCGATGTT
1 GATTCTGTAAGACCTTCTGGGCATGATTTCTAAGACCTCCAGGCATAAATTCGATTCACGATGTT
* * * * *
7577187 ATCCTGATTGATTCTTGATTTTTTGATTTACGGTGTTGTAACAGTT
66 ATCCCGATCGATTCTTGATTTTTTGACTTACGGTGTTATAACAGTC
* *
7577233 GATTCTGTAAGACCTT-TGGGCATGATTTCTAAGGCCTCCAGGCATAAATTCGATTCACGGTGTT
1 GATTCTGTAAGACCTTCTGGGCATGATTTCTAAGACCTCCAGGCATAAATTCGATTCACGATGTT
* * *
7577297 GTCCCGATCGATTCCTT-A-TTTTTGACTTACGGTGTTAT-CCTGGTC
66 ATCCCGATCGATT-CTTGATTTTTTGACTTACGGTGTTATAAC-AGTC
7577342 GATTCTGTAAGA-CTTCTGGGCATGA-TTCTTAAGACCT
1 GATTCTGTAAGACCTTCTGGGCATGATTTC-TAAGACCT
7577379 TCAGACATGA
Statistics
Matches: 126, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
108 7 0.06
109 48 0.38
110 68 0.54
111 3 0.02
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.39
Consensus pattern (111 bp):
GATTCTGTAAGACCTTCTGGGCATGATTTCTAAGACCTCCAGGCATAAATTCGATTCACGATGTT
ATCCCGATCGATTCTTGATTTTTTGACTTACGGTGTTATAACAGTC
Found at i:7577411 original size:241 final size:243
Alignment explanation
Indices: 7577011--7577463 Score: 641
Period size: 241 Copynumber: 1.9 Consensus size: 243
7577001 ACCTCCGAGA
* * **
7577011 ATGATTTTTAAGACCTCCAGACATAATTTCGATTCGTGGTGTTATCCCGATCGATTCCTTATCTT
1 ATGATTTCTAAGACCTCCAGACATAAATTCGATTCACGGTGTTATCCCGATCGATTCCTTATCTT
*
7577076 TTGACTTGAGATGTTATCCCAGTCGATTCTGTAAGACCTTCGAGCATGATTCTGTAAGACCTTCG
66 TTGACTTGAGATGTTATCCCAGTCGATTCTGTAAGACCTTCGAGCATGATTCTGTAAGACCTTCA
** * * *
7577141 GGTATGATTTCTAAGACCTCTAGGCATAAATTTGATTCGC-GATGTTATC-CTGATTGATTC-TT
131 GACATGATTTCTAAGACCTCCAAGCATAAATTTGATTCGCAG-TGTTATCTC-GATCGATTCATT
* *
7577203 GATTTTTTGATTTACGGTGTTGTAACAGTTGATTCTGTAAGACCTTTGGGC
194 -ATTTTTCGACTTACGGTGTTGTAACAGTTGATTCTGTAAGACCTTTGGGC
* * *
7577254 ATGATTTCTAAGGCCTCCAGGCATAAATTCGATTCACGGTGTTGTCCCGATCGATTCCTTAT-TT
1 ATGATTTCTAAGACCTCCAGACATAAATTCGATTCACGGTGTTATCCCGATCGATTCCTTATCTT
* ** *
7577318 TTGACTT-ACGGTGTTATCCTGGTCGATTCTGTAAGA-CTTCTGGGCATGATTCT-TAAGACCTT
66 TTGACTTGA-GATGTTATCCCAGTCGATTCTGTAAGACCTTC-GAGCATGATTCTGTAAGACCTT
7577380 CAGACATGATTTCTAAGACCTCCAAGCATAAATTTGATTCGCAGTGTTATCTCGATCGATTCATT
129 CAGACATGATTTCTAAGACCTCCAAGCATAAATTTGATTCGCAGTGTTATCTCGATCGATTCATT
7577445 ATTTTTCGACTTACGGTGT
194 ATTTTTCGACTTACGGTGT
7577464 CATCCTAATC
Statistics
Matches: 186, Mismatches: 19, Indels: 12
0.86 0.09 0.06
Matches are distributed among these distances:
241 83 0.45
242 48 0.26
243 55 0.30
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (243 bp):
ATGATTTCTAAGACCTCCAGACATAAATTCGATTCACGGTGTTATCCCGATCGATTCCTTATCTT
TTGACTTGAGATGTTATCCCAGTCGATTCTGTAAGACCTTCGAGCATGATTCTGTAAGACCTTCA
GACATGATTTCTAAGACCTCCAAGCATAAATTTGATTCGCAGTGTTATCTCGATCGATTCATTAT
TTTTCGACTTACGGTGTTGTAACAGTTGATTCTGTAAGACCTTTGGGC
Found at i:7577413 original size:131 final size:133
Alignment explanation
Indices: 7577232--7577469 Score: 354
Period size: 131 Copynumber: 1.8 Consensus size: 133
7577222 TTGTAACAGT
** * * * *
7577232 TGATTCTGTAAGACCTTTGGGCATGATTTCTAAGGCCTCCAGGCATAAATTCGATTCACGGTGTT
1 TGATTCTGTAAGACCTTCAGACATGATTTCTAAGACCTCCAAGCATAAATTCGATTCACAGTGTT
* * *
7577297 GTCCCGATCGATTCCTTATTTTT-GACTTACGGTGTTATCCTGGTCGATTCTGTAAGACTTCTGG
66 ATCCCGATCGATTCATTATTTTTCGACTTACGGTGTCATCCTGGTCGATTCTGTAAGACTTCTGG
7577361 GCA
131 GCA
* *
7577364 TGATTCT-TAAGACCTTCAGACATGATTTCTAAGACCTCCAAGCATAAATTTGATTCGCAGTGTT
1 TGATTCTGTAAGACCTTCAGACATGATTTCTAAGACCTCCAAGCATAAATTCGATTCACAGTGTT
*
7577428 ATCTCGATCGATTCATTATTTTTCGACTTACGGTGTCATCCT
66 ATCCCGATCGATTCATTATTTTTCGACTTACGGTGTCATCCT
7577470 AATCGTTTTA
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
131 69 0.74
132 24 0.26
ACGTcount: A:0.22, C:0.21, G:0.19, T:0.37
Consensus pattern (133 bp):
TGATTCTGTAAGACCTTCAGACATGATTTCTAAGACCTCCAAGCATAAATTCGATTCACAGTGTT
ATCCCGATCGATTCATTATTTTTCGACTTACGGTGTCATCCTGGTCGATTCTGTAAGACTTCTGG
GCA
Found at i:7577654 original size:3 final size:3
Alignment explanation
Indices: 7577633--7577707 Score: 59
Period size: 3 Copynumber: 26.0 Consensus size: 3
7577623 AATTTTTGTT
* ** * *
7577633 TAA TAT TAA TAA TTT TAA TAA TAA TAA TAA TAA TAT TAA TAA T-A TTA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
7577680 TAA TAA T-T TAA -AGA -AA TAA TAA TAA TAA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA
7577708 AAAAAAGAGA
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
2 5 0.09
3 52 0.91
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (3 bp):
TAA
Found at i:7578051 original size:13 final size:13
Alignment explanation
Indices: 7578033--7578061 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7578023 ACCCATACCC
7578033 AAATAGAAACAAA
1 AAATAGAAACAAA
7578046 AAATAGAAACAAA
1 AAATAGAAACAAA
7578059 AAA
1 AAA
7578062 CAAAGATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.79, C:0.07, G:0.07, T:0.07
Consensus pattern (13 bp):
AAATAGAAACAAA
Found at i:7579226 original size:31 final size:31
Alignment explanation
Indices: 7579185--7579291 Score: 126
Period size: 31 Copynumber: 3.4 Consensus size: 31
7579175 CTAGGTTTCT
*
7579185 AAAACTCCTTAAATCCAAACCCCTAAATTCC
1 AAAACCCCTTAAATCCAAACCCCTAAATTCC
* * *
7579216 AAAATCCCTTAAATCCAAACCTCTAAAATCC
1 AAAACCCCTTAAATCCAAACCCCTAAATTCC
* **
7579247 GAAACCCCTCGAATCCAAAACCCCTAAAATT-C
1 AAAACCCCTTAAATCC-AAACCCCT-AAATTCC
7579279 AAAACCCCTTAAA
1 AAAACCCCTTAAA
7579292 ATCCGAAATC
Statistics
Matches: 61, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
31 39 0.64
32 18 0.30
33 4 0.07
ACGTcount: A:0.44, C:0.35, G:0.02, T:0.20
Consensus pattern (31 bp):
AAAACCCCTTAAATCCAAACCCCTAAATTCC
Found at i:7579232 original size:16 final size:16
Alignment explanation
Indices: 7579185--7579291 Score: 103
Period size: 16 Copynumber: 6.8 Consensus size: 16
7579175 CTAGGTTTCT
*
7579185 AAAACTCCTTAAATCC
1 AAAACCCCTTAAATCC
7579201 -AAACCCC-TAAATTCC
1 AAAACCCCTTAAA-TCC
*
7579216 AAAATCCCTTAAATCC
1 AAAACCCCTTAAATCC
* *
7579232 -AAACCTCTAAAATCC
1 AAAACCCCTTAAATCC
* **
7579247 GAAACCCCTCGAATCC
1 AAAACCCCTTAAATCC
* *
7579263 AAAACCCCTAAAATTC
1 AAAACCCCTTAAATCC
7579279 AAAACCCCTTAAA
1 AAAACCCCTTAAA
7579292 ATCCGAAATC
Statistics
Matches: 74, Mismatches: 13, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
14 4 0.05
15 21 0.28
16 45 0.61
17 4 0.05
ACGTcount: A:0.44, C:0.35, G:0.02, T:0.20
Consensus pattern (16 bp):
AAAACCCCTTAAATCC
Found at i:7579330 original size:14 final size:14
Alignment explanation
Indices: 7579311--7579349 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
7579301 CTCAAACCTT
7579311 TAAACTCTTAAATC
1 TAAACTCTTAAATC
7579325 TAAACTCTTAAATC
1 TAAACTCTTAAATC
* *
7579339 CAAACCCTTAA
1 TAAACTCTTAA
7579350 TTCAAAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.44, C:0.26, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAACTCTTAAATC
Found at i:7579357 original size:14 final size:14
Alignment explanation
Indices: 7579312--7579359 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
7579302 TCAAACCTTT
* *
7579312 AAACTCTTAAATCT
1 AAACCCTTAAATCA
* *
7579326 AAACTCTTAAATCC
1 AAACCCTTAAATCA
*
7579340 AAACCCTTAATTCA
1 AAACCCTTAAATCA
7579354 AAACCC
1 AAACCC
7579360 CAAACCTCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.44, C:0.29, G:0.00, T:0.27
Consensus pattern (14 bp):
AAACCCTTAAATCA
Found at i:7579408 original size:30 final size:28
Alignment explanation
Indices: 7579373--7579481 Score: 103
Period size: 30 Copynumber: 3.7 Consensus size: 28
7579363 ACCTCAAATT
*
7579373 TTAAAACCGAAACCCTAAAATCTTCAAAC
1 TTAAAACC-AAACCCTAAAACCTTCAAAC
* *
7579402 TCTAAAATCAAAACCCT-AAACCTTGCATAC
1 T-TAAAA-CCAAACCCTAAAACCTT-CAAAC
*
7579432 TTTAAAACCAAACCCTAAAACCCTCAAAAC
1 -TTAAAACCAAACCCTAAAACCTTC-AAAC
*
7579462 TTAAATCCAAACCCTTAAAA
1 TTAAAACCAAACCC-TAAAA
7579482 TCTGAATCTT
Statistics
Matches: 66, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
29 29 0.44
30 35 0.53
31 2 0.03
ACGTcount: A:0.48, C:0.29, G:0.02, T:0.21
Consensus pattern (28 bp):
TTAAAACCAAACCCTAAAACCTTCAAAC
Found at i:7579468 original size:58 final size:56
Alignment explanation
Indices: 7579345--7579476 Score: 149
Period size: 58 Copynumber: 2.3 Consensus size: 56
7579335 AATCCAAACC
* * * * *
7579345 CTTAATTCAAAACCCCAAACCTCAAATTTTAAAACCGAAACCCTAAAATCTTCAAA
1 CTTAAATCAAAACCCTAAACCTCAAACTTTAAAACCGAAACCCTAAAACCCTCAAA
*
7579401 CTCTAAAATCAAAACCCTAAACCTTGCATACTTTAAAACC-AAACCCTAAAACCCTCAAAA
1 CT-T-AAATCAAAACCCTAAACC-T-CAAACTTTAAAACCGAAACCCTAAAACCCTC-AAA
*
7579461 CTTAAATCCAAACCCT
1 CTTAAATCAAAACCCT
7579477 TAAAATCTGA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
56 2 0.03
57 1 0.02
58 28 0.44
59 16 0.25
60 17 0.27
ACGTcount: A:0.45, C:0.31, G:0.02, T:0.22
Consensus pattern (56 bp):
CTTAAATCAAAACCCTAAACCTCAAACTTTAAAACCGAAACCCTAAAACCCTCAAA
Found at i:7581481 original size:37 final size:38
Alignment explanation
Indices: 7581435--7581507 Score: 96
Period size: 38 Copynumber: 1.9 Consensus size: 38
7581425 CGCATTTCAT
*
7581435 GCATCATGAT-GAATAATA-CATGTATTCCATCCCATGC
1 GCATCATGATAGAATAATATCA-GCATTCCATCCCATGC
* *
7581472 GCATCATGATAGGATAATATGAGCATTCCATCCCAT
1 GCATCATGATAGAATAATATCAGCATTCCATCCCAT
7581508 CCACATCAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 10 0.32
38 20 0.65
39 1 0.03
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (38 bp):
GCATCATGATAGAATAATATCAGCATTCCATCCCATGC
Found at i:7583366 original size:14 final size:14
Alignment explanation
Indices: 7583349--7583375 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7583339 TTTAAAAATT
7583349 TTATTTATTTTTTA
1 TTATTTATTTTTTA
7583363 TTATTTATTTTTT
1 TTATTTATTTTTT
7583376 TGAAGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTATTTATTTTTTA
Found at i:7585037 original size:7 final size:7
Alignment explanation
Indices: 7585012--7585052 Score: 55
Period size: 8 Copynumber: 5.4 Consensus size: 7
7585002 GTTTTCTTGC
7585012 TTTTGTTA
1 TTTT-TTA
7585020 TTTTGTTA
1 TTTT-TTA
7585028 TTTTTTA
1 TTTTTTA
7585035 TTTTTGTA
1 TTTTT-TA
7585043 TTTTTTA
1 TTTTTTA
7585050 TTT
1 TTT
7585053 AATTAATGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 13 0.41
8 19 0.59
ACGTcount: A:0.12, C:0.00, G:0.07, T:0.80
Consensus pattern (7 bp):
TTTTTTA
Found at i:7585037 original size:15 final size:15
Alignment explanation
Indices: 7585020--7585052 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 15
7585010 GCTTTTGTTA
7585020 TTTTGTTATTTTTTAT
1 TTTTG-TATTTTTTAT
7585036 TTTTGTATTTTTTAT
1 TTTTGTATTTTTTAT
7585051 TT
1 TT
7585053 AATTAATGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82
Consensus pattern (15 bp):
TTTTGTATTTTTTAT
Found at i:7585392 original size:27 final size:26
Alignment explanation
Indices: 7585352--7585402 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
7585342 ATCTTTTTAT
7585352 AATAAATATAATTCTAAAAATATCTA
1 AATAAATATAATTCTAAAAATATCTA
* *
7585378 AATAACATATCATTCTAAAATTATC
1 AATAA-ATATAATTCTAAAAATATC
7585403 AATTATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (26 bp):
AATAAATATAATTCTAAAAATATCTA
Found at i:7588315 original size:18 final size:18
Alignment explanation
Indices: 7588292--7588337 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
7588282 GACCACTTAT
* *
7588292 TAAAATTTATCATTTAAA
1 TAAAATTTATAAATTAAA
* *
7588310 TAAAATTTTTAAATTAAT
1 TAAAATTTATAAATTAAA
7588328 TAAAATTTAT
1 TAAAATTTAT
7588338 TAAAAAGATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (18 bp):
TAAAATTTATAAATTAAA
Found at i:7589694 original size:11 final size:10
Alignment explanation
Indices: 7589667--7589691 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7589657 AATAATATAT
7589667 AAAAATTCAA
1 AAAAATTCAA
7589677 AAAAATTCAA
1 AAAAATTCAA
7589687 AAAAA
1 AAAAA
7589692 ATTTTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (10 bp):
AAAAATTCAA
Found at i:7590708 original size:12 final size:13
Alignment explanation
Indices: 7590682--7590710 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7590672 TCCCCAAATT
7590682 TTTTTTTTTGCTA
1 TTTTTTTTTGCTA
7590695 TTTTTTTTTG-TA
1 TTTTTTTTTGCTA
7590707 TTTT
1 TTTT
7590711 GTATTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.38
13 10 0.62
ACGTcount: A:0.07, C:0.03, G:0.07, T:0.83
Consensus pattern (13 bp):
TTTTTTTTTGCTA
Found at i:7590717 original size:17 final size:17
Alignment explanation
Indices: 7590697--7590745 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
7590687 TTTTGCTATT
*
7590697 TTTTTTTGTATTTTGTA
1 TTTTTTTGTATTTTGCA
7590714 TTTTTTTGGTATTTTGCA
1 TTTTTTT-GTATTTTGCA
* *
7590732 TTATTTGGTATTTT
1 TTTTTTTGTATTTT
7590746 TCTTGTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.12, C:0.02, G:0.14, T:0.71
Consensus pattern (17 bp):
TTTTTTTGTATTTTGCA
Found at i:7590725 original size:18 final size:18
Alignment explanation
Indices: 7590696--7590745 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
7590686 TTTTTGCTAT
* *
7590696 TTTTTTTTGTATTTTGTA
1 TTTTTTTGGTATTTTGCA
7590714 TTTTTTTGGTATTTTGCA
1 TTTTTTTGGTATTTTGCA
*
7590732 -TTATTTGGTATTTT
1 TTTTTTTGGTATTTT
7590746 TCTTGTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
17 13 0.45
18 16 0.55
ACGTcount: A:0.12, C:0.02, G:0.14, T:0.72
Consensus pattern (18 bp):
TTTTTTTGGTATTTTGCA
Found at i:7590736 original size:28 final size:25
Alignment explanation
Indices: 7590705--7590769 Score: 78
Period size: 28 Copynumber: 2.5 Consensus size: 25
7590695 TTTTTTTTTG
7590705 TATTTTGTATTTTT-TTGGTATTTTGCA
1 TATTTTGTATTTTTCTT-GTA-TTT-CA
*
7590732 TTATTTGGTATTTTTCTTGTATTTCA
1 -TATTTTGTATTTTTCTTGTATTTCA
7590758 TATTTTGTATTT
1 TATTTTGTATTT
7590770 AATAATAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 11 0.32
26 2 0.06
27 3 0.09
28 16 0.47
29 2 0.06
ACGTcount: A:0.15, C:0.05, G:0.12, T:0.68
Consensus pattern (25 bp):
TATTTTGTATTTTTCTTGTATTTCA
Found at i:7590973 original size:47 final size:46
Alignment explanation
Indices: 7590922--7591935 Score: 311
Period size: 48 Copynumber: 21.5 Consensus size: 46
7590912 CCTTTCACTT
*
7590922 GAGGCTCGACAACTTTAAAATATTTTTTGAAAAAGCTTATCTAAGCA
1 GAGGCTCAACAACTTTAAAA-ATTTTTTGAAAAAGCTTATCTAAGCA
* * * * *
7590969 GAGGCTCAACAACTTTAAAAATCATCTTGAAAAAGGCTTTTCTTAGTA
1 GAGGCTCAACAACTTTAAAAAT-TTTTTGAAAAA-GCTTATCTAAGCA
* * * * *
7591017 GAGGCTTAACAATTTTAAAAATTCTCATCTTAAAAAAGCTCATCTCAGCA
1 GAGGCTCAACAACTTTAAAAATT-T--T-TTGAAAAAGCTTATCTAAGCA
* * * * *
7591067 AAGGCTCAACAACTTTAAAAATCTCATCTTG-AAAAGTTTCTCCCAA-CA
1 GAGGCTCAACAACTTTAAAAAT-T--TTTTGAAAAAGCTTAT-CTAAGCA
* * * * * *
7591115 GAGGCTTAAGAACTTTAAAAA---TCT----CATC-T-TC--AGTA
1 GAGGCTCAACAACTTTAAAAATTTTTTGAAAAAGCTTATCTAAGCA
** * * ** **
7591150 GAGGCTCAATGA-TTTTAAAATCTCTTTTGGAAAAGCTCCTCTCCGCA
1 GAGGCTCAACAACTTTAAAAAT-T-TTTTGAAAAAGCTTATCTAAGCA
* * * **
7591197 GAGGCTCAACAATTTTAAAAATCTCATCTGAAAAAGCTCCTCTCAA-CA
1 GAGGCTCAACAACTTTAAAAAT-T-TTTTGAAAAAGCTTATCT-AAGCA
* * * * *
7591245 GAGGCTTAACAACTTT-AAAA--TCTTAAAAAAGCTCATCTCAGCA
1 GAGGCTCAACAACTTTAAAAATTTTTTGAAAAAGCTTATCTAAGCA
* ** * *
7591288 GAGGCTCAACAACTTT-AAAATCTCATCTTGGAAAGGGCTCT-TTTCAGCA
1 GAGGCTCAACAACTTTAAAAAT-T--T-TTTGAAAAAGCT-TATCTAAGCA
* * * * * *
7591337 GAGGCTCAACAACTTTAAAAATCTCATCTAAAAAAGCTCATCTTAGTA
1 GAGGCTCAACAACTTTAAAAAT-T-TTTTGAAAAAGCTTATCTAAGCA
* * ** ** *
7591385 GAGGCTTAACAACTTT-AAAATCTCAT-AGAAAAGCTCCTCTCAGCA
1 GAGGCTCAACAACTTTAAAAATTTTTTGA-AAAAGCTTATCTAAGCA
* * ** *
7591430 GAGGCTCAATAACTTTAAAAATATCATCTTGAAAAGAGCTCCTCTCAGCA
1 GAGGCTCAACAACTTTAAAAAT-T--TTTTGAAAA-AGCTTATCTAAGCA
* ** * ** *
7591480 AAGGCTCAATGACTTTAAAAATTCTCATTTTGAAAAATCTCCTCTCAGCA
1 GAGGCTCAACAACTTTAAAAA-T-T--TTTTGAAAAAGCTTATCTAAGCA
* * * * *** *
7591530 AATGCTTAACAACTTTAAAAATCTCATCTTG-AAAAGCACCTCTCAA-TA
1 GAGGCTCAACAACTTTAAAAAT-T--TTTTGAAAAAGCTTATCT-AAGCA
** *
7591578 GAGGCTCAACAACTTTAAAAATCTCATTTTGAAAAGAGCTCCTCTCAGCA
1 GAGGCTCAACAACTTTAAAAAT-T--TTTTGAAAA-AGCTTATCTAAGCA
** * *
7591628 GAGGCTCAATGACTTT-AAAATCTCTTTTG-AAAAGCTTCTCTCAGCA
1 GAGGCTCAACAACTTTAAAAAT-T-TTTTGAAAAAGCTTATCTAAGCA
* * * * ** *
7591674 GAGACTCAATAACTTTAAAAATCTCATCTGAAAAAGCTCCTCTTAGCA
1 GAGGCTCAACAACTTTAAAAAT-T-TTTTGAAAAAGCTTATCTAAGCA
* ** ** *
7591722 GAGGCTCAACAACTTT-AAAATCTCATGAAAAAGCTCCTCTCAGCA
1 GAGGCTCAACAACTTTAAAAATTTTTTGAAAAAGCTTATCTAAGCA
* * * * * *
7591767 TAGGATCAACAACTTTAAAAATCTCATCTGAAAAAGCTCATCTCAA-TA
1 GAGGCTCAACAACTTTAAAAAT-T-TTTTGAAAAAGCTTATCT-AAGCA
* * * * * * *
7591815 GAGGCTCAACGACTTTAAAAATCATCTTGAAAATGGCTCATCTCAGTA
1 GAGGCTCAACAACTTTAAAAAT-TTTTTGAAAA-AGCTTATCTAAGCA
** * *
7591863 GAGGCTCAACAACTTTAAAAATTCTCATCTTGAAAAAAGCTCCTCTCAGTA
1 GAGGCTCAACAACTTTAAAAATT-T--T-TTG-AAAAAGCTTATCTAAGCA
7591914 GAGGCTCAACAACTTTAAAAAT
1 GAGGCTCAACAACTTTAAAAAT
7591936 CTCATCTTGG
Statistics
Matches: 754, Mismatches: 153, Indels: 116
0.74 0.15 0.11
Matches are distributed among these distances:
34 8 0.01
35 10 0.01
36 1 0.00
37 1 0.00
38 1 0.00
39 3 0.00
42 2 0.00
43 36 0.05
44 1 0.00
45 64 0.08
46 39 0.05
47 75 0.10
48 267 0.35
49 62 0.08
50 122 0.16
51 57 0.08
52 5 0.01
ACGTcount: A:0.38, C:0.22, G:0.13, T:0.28
Consensus pattern (46 bp):
GAGGCTCAACAACTTTAAAAATTTTTTGAAAAAGCTTATCTAAGCA
Found at i:7591120 original size:98 final size:97
Alignment explanation
Indices: 7590951--7591144 Score: 250
Period size: 98 Copynumber: 2.0 Consensus size: 97
7590941 ATATTTTTTG
* * ** **
7590951 AAAAAGCTTATCTAAGCAGAGGCTCAACAACTTTAAAAATCATCTTGAAAAAGGCTTTTCTTAGT
1 AAAAAGCTCATCTAAGCAAAGGCTCAACAACTTTAAAAATCATCTTGAAAAAGGCTTTTCCCAAC
*
7591016 AGAGGCTTAACAATTTTAAAAATTCTCATCTTA
66 AGAGGCTTAACAACTTTAAAAA-TCTCATCTTA
*
7591049 AAAAAGCTCATCTCAGCAAAGGCTCAACAACTTTAAAAATCTCATCTTG-AAAA-G-TTTCTCCC
1 AAAAAGCTCATCTAAGCAAAGGCTCAACAACTTTAAAAA--TCATCTTGAAAAAGGCTTT-TCCC
*
7591111 AACAGAGGCTTAAGAACTTTAAAAATCTCATCTT
63 AACAGAGGCTTAACAACTTTAAAAATCTCATCTT
7591145 CAGTAGAGGC
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
97 12 0.14
98 60 0.71
99 4 0.05
100 8 0.10
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (97 bp):
AAAAAGCTCATCTAAGCAAAGGCTCAACAACTTTAAAAATCATCTTGAAAAAGGCTTTTCCCAAC
AGAGGCTTAACAACTTTAAAAATCTCATCTTA
Found at i:7591184 original size:82 final size:83
Alignment explanation
Indices: 7591049--7591225 Score: 191
Period size: 82 Copynumber: 2.2 Consensus size: 83
7591039 TCTCATCTTA
* * *
7591049 AAAAAGCTCATC-TCAGCAAAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAGTTTCTC-CCA
1 AAAAATCTCATCTTCAGCAAAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAGCTCCTCTCC-
* *
7591112 ACAGAGGCTTAAGAACTTT
65 ACAGAGGCTCAACAACTTT
* * ** * *
7591131 AAAAATCTCATCTTCAGTAGAGGCTCAATGA-TTTTAAAATCTC-TTTTGGAAAAGCTCCTCTCC
1 AAAAATCTCATCTTCAGCAAAGGCTCAACAACTTTAAAAATCTCATCTT-GAAAAGCTCCTCTCC
* *
7591194 GCAGAGGCTCAACAATTTT
65 ACAGAGGCTCAACAACTTT
7591213 AAAAATCTCATCT
1 AAAAATCTCATCT
7591226 GAAAAAGCTC
Statistics
Matches: 79, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
81 3 0.04
82 60 0.76
83 16 0.20
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.29
Consensus pattern (83 bp):
AAAAATCTCATCTTCAGCAAAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAGCTCCTCTCCA
CAGAGGCTCAACAACTTT
Found at i:7591485 original size:50 final size:49
Alignment explanation
Indices: 7591144--7591991 Score: 897
Period size: 48 Copynumber: 17.7 Consensus size: 49
7591134 AATCTCATCT
* ** * * *
7591144 TCAGTAGAGGCTCAATGA-TTTTAAAATCTC-TTTTGGAAAAGCTCCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
* *
7591191 TCCGCAGAGGCTCAACAATTTTAAAAATCTCATC-TGAAAAAGCTCCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
* * * *
7591239 TCAACAGAGGCTTAACAACTTT--AAA----ATCTTAAAAAAGCTCATC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
** * *
7591282 TCAGCAGAGGCTCAACAACTTT-AAAATCTCATCTTGGAAAGGGCTCTTT
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTT-GAAAAAGCTCCTC
* *
7591331 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATC-TAAAAAAGCTCATC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
* * * *
7591379 TTAGTAGAGGCTTAACAACTTT-AAAATCTCA--TAG-AAAAGCTCCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
* *
7591424 TCAGCAGAGGCTCAATAACTTTAAAAATATCATCTTGAAAAGAGCTCCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAA-AGCTCCTC
* ** * *
7591474 TCAGCAAAGGCTCAATGACTTTAAAAATTCTCATTTTGAAAAATCTCCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAA-TCTCATCTTGAAAAAGCTCCTC
* * * *
7591524 TCAGCAAATGCTTAACAACTTTAAAAATCTCATCTTG-AAAAGCACCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
** *
7591572 TCAATAGAGGCTCAACAACTTTAAAAATCTCATTTTGAAAAGAGCTCCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAA-AGCTCCTC
** * *
7591622 TCAGCAGAGGCTCAATGACTTT-AAAATCTC-TTTTG-AAAAGCTTCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
* *
7591668 TCAGCAGAGACTCAATAACTTTAAAAATCTCATC-TGAAAAAGCTCCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
*
7591716 TTAGCAGAGGCTCAACAACTTT-AAAATCTCA---TGAAAAAGCTCCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
* * *
7591761 TCAGCATAGGATCAACAACTTTAAAAATCTCATC-TGAAAAAGCTCATC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
** * * *
7591809 TCAATAGAGGCTCAACGACTTTAAAAA--TCATCTTGAAAATGGCTCATC
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAA-AGCTCCTC
*
7591857 TCAGTAGAGGCTCAACAACTTTAAAAATTCTCATCTTGAAAAAAGCTCCTC
1 TCAGCAGAGGCTCAACAACTTTAAAAA-TCTCATCTTG-AAAAAGCTCCTC
* * *
7591908 TCAGTAGAGGCTCAACAACTTTAAAAATCTCATCTTGGAAAAGCTCCTA
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
** * * *
7591957 TCAATAGAGGCTTAACAA-TTTTAAAATGTCATCTT
1 TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTT
7591992 TTCTCAAAAC
Statistics
Matches: 682, Mismatches: 88, Indels: 61
0.82 0.11 0.07
Matches are distributed among these distances:
42 3 0.00
43 32 0.05
44 3 0.00
45 61 0.09
46 52 0.08
47 51 0.07
48 233 0.34
49 81 0.12
50 109 0.16
51 53 0.08
52 4 0.01
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (49 bp):
TCAGCAGAGGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGCTCCTC
Found at i:7602559 original size:19 final size:19
Alignment explanation
Indices: 7602526--7602579 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
7602516 AAGAAAAAAC
7602526 ATTTTTTTTATT-TTTT-AG
1 ATTTTTTTT-TTGTTTTGAG
7602544 -TGTTTTTTTTTGTTTTGAG
1 AT-TTTTTTTTTGTTTTGAG
*
7602563 ATTTTTTGTTTGTTTTG
1 ATTTTTTTTTTGTTTTG
7602580 TTTTGTTTCG
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
17 3 0.10
18 11 0.35
19 16 0.52
20 1 0.03
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (19 bp):
ATTTTTTTTTTGTTTTGAG
Found at i:7603801 original size:12 final size:12
Alignment explanation
Indices: 7603760--7603801 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
7603750 CTTTGTTAGA
7603760 AATTTTATTAAT
1 AATTTTATTAAT
*
7603772 TATTTTATTAAT
1 AATTTTATTAAT
*
7603784 ATTTTTATTTAA-
1 AATTTTA-TTAAT
7603796 AATTTT
1 AATTTT
7603802 GAAGAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 21 0.84
13 4 0.16
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
AATTTTATTAAT
Found at i:7604349 original size:23 final size:23
Alignment explanation
Indices: 7604304--7604350 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
7604294 ATAAATATTT
* *
7604304 TAATATGTAAAATATTAATAAAA
1 TAATATATAAAAAATTAATAAAA
7604327 TAATATATAAAAAATTCAA-AAAA
1 TAATATATAAAAAATT-AATAAAA
7604350 T
1 T
7604351 TCAAAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 19 0.90
24 2 0.10
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (23 bp):
TAATATATAAAAAATTAATAAAA
Found at i:7605363 original size:18 final size:17
Alignment explanation
Indices: 7605342--7605391 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
7605332 TTTTGCTATT
*
7605342 TTTTTTTAGTATTTTGTA
1 TTTTTTTGGTATTTTG-A
7605360 TTTTTTTGGTATTTTGA
1 TTTTTTTGGTATTTTGA
*
7605377 TTTATTTGGTATTTT
1 TTTTTTTGGTATTTT
7605392 TTTTGTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
17 15 0.50
18 15 0.50
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.72
Consensus pattern (17 bp):
TTTTTTTGGTATTTTGA
Found at i:7607923 original size:18 final size:19
Alignment explanation
Indices: 7607902--7607951 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 19
7607892 GAATTTTCTA
*
7607902 ATTTTTTTATATATT-ATT
1 ATTTTTTTATATATTAAGT
* *
7607920 ATTTTTGTA-ATTTTAAGT
1 ATTTTTTTATATATTAAGT
7607938 ATTTTTTTAT-TATT
1 ATTTTTTTATATATT
7607952 TATGCATTAT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (19 bp):
ATTTTTTTATATATTAAGT
Found at i:7619781 original size:7 final size:7
Alignment explanation
Indices: 7619769--7619809 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
7619759 TTTTGCTTAA
7619769 AAAAAAG
1 AAAAAAG
7619776 AAAAAAG
1 AAAAAAG
7619783 AAAAAA-
1 AAAAAAG
7619789 AATACAAA-
1 AA-A-AAAG
7619797 AAAAAAG
1 AAAAAAG
7619804 AAAAAA
1 AAAAAA
7619810 ATGACAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
6 5 0.16
7 21 0.68
8 5 0.16
ACGTcount: A:0.88, C:0.02, G:0.07, T:0.02
Consensus pattern (7 bp):
AAAAAAG
Found at i:7619808 original size:22 final size:22
Alignment explanation
Indices: 7619776--7619827 Score: 81
Period size: 21 Copynumber: 2.4 Consensus size: 22
7619766 TAAAAAAAAG
7619776 AAAAAAGAAAAAAAAT-ACAAA
1 AAAAAAGAAAAAAAATGACAAA
7619797 AAAAAAG-AAAAAAATGACAAA
1 AAAAAAGAAAAAAAATGACAAA
7619818 AAAGAAAGAA
1 AAA-AAAGAA
7619828 GTAATTCAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.29
21 15 0.54
22 4 0.14
23 1 0.04
ACGTcount: A:0.83, C:0.04, G:0.10, T:0.04
Consensus pattern (22 bp):
AAAAAAGAAAAAAAATGACAAA
Found at i:7619818 original size:10 final size:9
Alignment explanation
Indices: 7619767--7619824 Score: 57
Period size: 9 Copynumber: 6.3 Consensus size: 9
7619757 TATTTTGCTT
7619767 AAAAAAAAG
1 AAAAAAAAG
7619776 AAAAAAGAA-
1 AAAAAA-AAG
7619785 AAAAAATACA-
1 AAAAAA-A-AG
7619795 AAAAAAAAG
1 AAAAAAAAG
*
7619804 AAAAAAATG
1 AAAAAAAAG
*
7619813 ACAAAAAAG
1 AAAAAAAAG
7619822 AAA
1 AAA
7619825 GAAGTAATTC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
8 1 0.02
9 31 0.76
10 9 0.22
ACGTcount: A:0.84, C:0.03, G:0.09, T:0.03
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:7621102 original size:30 final size:31
Alignment explanation
Indices: 7621057--7621135 Score: 99
Period size: 30 Copynumber: 2.6 Consensus size: 31
7621047 GTTTTGAAGG
* *
7621057 TTTGGTTTTTAGGGGTTTGGATTT-AAGAGAT
1 TTTGGATTTTAGGGGTTTAGATTTAAAG-GAT
7621088 TTTGGATTTT-GGGGTTTAGATTTAAAGGAT
1 TTTGGATTTTAGGGGTTTAGATTTAAAGGAT
**
7621118 TTCAGATTTTAGGGGTTT
1 TTTGGATTTTAGGGGTTT
7621136 TAAAAATGCG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
30 23 0.55
31 19 0.45
ACGTcount: A:0.20, C:0.01, G:0.30, T:0.48
Consensus pattern (31 bp):
TTTGGATTTTAGGGGTTTAGATTTAAAGGAT
Found at i:7622133 original size:33 final size:33
Alignment explanation
Indices: 7622060--7622133 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
7622050 CGTTCCTTTG
* ***
7622060 CCATTGTCACCGTCATTCGTCGGTCATCGGTTG
1 CCATCGTCACCGTCATTCGTCGGTCATCGGCCA
* * *
7622093 CCGTCGTCATCGTCGTTCGTCGGTCATCGGCCA
1 CCATCGTCACCGTCATTCGTCGGTCATCGGCCA
7622126 CCATCGTC
1 CCATCGTC
7622134 GGTGGTCGAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.11, C:0.35, G:0.24, T:0.30
Consensus pattern (33 bp):
CCATCGTCACCGTCATTCGTCGGTCATCGGCCA
Done.