Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 38 of 77
Found at i:7622708 original size:26 final size:25
Alignment explanation
Indices: 7622679--7622747 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 25
7622669 TTTTTTTTGG
7622679 TATTTTGTATTATTTTTTGTATTTCA
1 TATTTTGTATT-TTTTTTGTATTTCA
* *
7622705 TATTTTATATTTTTTTTTGTATTTCG
1 TATTTTGTA-TTTTTTTTGTATTTCA
7622731 TATTTTGTATTTTTTTT
1 TATTTTGTATTTTTTTT
7622748 CTGGACAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
25 8 0.21
26 29 0.74
27 2 0.05
ACGTcount: A:0.16, C:0.03, G:0.07, T:0.74
Consensus pattern (25 bp):
TATTTTGTATTTTTTTTGTATTTCA
Found at i:7622717 original size:7 final size:7
Alignment explanation
Indices: 7622673--7622743 Score: 60
Period size: 7 Copynumber: 10.6 Consensus size: 7
7622663 TGTTCTTTTT
7622673 TTTTGGTA
1 TTTT-GTA
7622681 TTTTGTA
1 TTTTGTA
*
7622688 TTAT-T-
1 TTTTGTA
7622693 TTTTGTA
1 TTTTGTA
**
7622700 TTTCATA
1 TTTTGTA
*
7622707 TTTTATA
1 TTTTGTA
7622714 TTTT-T-
1 TTTTGTA
7622719 TTTTGTA
1 TTTTGTA
*
7622726 TTTCGTA
1 TTTTGTA
7622733 TTTTGTA
1 TTTTGTA
7622740 TTTT
1 TTTT
7622744 TTTTCTGGAC
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
5 7 0.13
6 4 0.08
7 37 0.71
8 4 0.08
ACGTcount: A:0.15, C:0.03, G:0.10, T:0.72
Consensus pattern (7 bp):
TTTTGTA
Found at i:7622727 original size:19 final size:20
Alignment explanation
Indices: 7622668--7622710 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
7622658 TTTTTTGTTC
**
7622668 TTTTTTTTTGGTATTTTGTA
1 TTTTTTTTTGGTATTTCATA
*
7622688 TTATTTTTT-GTATTTCATA
1 TTTTTTTTTGGTATTTCATA
7622707 TTTT
1 TTTT
7622711 ATATTTTTTT
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.14, C:0.02, G:0.09, T:0.74
Consensus pattern (20 bp):
TTTTTTTTTGGTATTTCATA
Found at i:7623500 original size:34 final size:34
Alignment explanation
Indices: 7623442--7623602 Score: 125
Period size: 34 Copynumber: 4.7 Consensus size: 34
7623432 GATTTTAAAT
* * *
7623442 TAAAGAGATCGAGATTGAATCACGAATCTGAGAA
1 TAAAAAGATCGAGATTAAACCACGAATCTGAGAA
* ** *
7623476 TAAAAAGATC-AGGATTAAACCACGAGTCAAAAAA
1 TAAAAAGATCGA-GATTAAACCACGAATCTGAGAA
* * *
7623510 TAATAACA-ATCGAGATTAAACTACG-ATTTTA-AA
1 TAA-AA-AGATCGAGATTAAACCACGAATCTGAGAA
* * *
7623543 TTAAAGAGATCGAGATTGAACCGCGAATC-GAAGAA
1 -TAAAAAGATCGAGATTAAACCACGAATCTG-AGAA
7623578 TAAAAAGATCGAGATTAAACCACGA
1 TAAAAAGATCGAGATTAAACCACGA
7623603 GTCAAAGATT
Statistics
Matches: 97, Mismatches: 21, Indels: 18
0.71 0.15 0.13
Matches are distributed among these distances:
32 1 0.01
33 18 0.19
34 58 0.60
35 18 0.19
36 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (34 bp):
TAAAAAGATCGAGATTAAACCACGAATCTGAGAA
Found at i:7623500 original size:210 final size:206
Alignment explanation
Indices: 7623159--7623609 Score: 654
Period size: 210 Copynumber: 2.2 Consensus size: 206
7623149 TAAGTCAAAA
* * * *
7623159 AATAAGAAGATCGAGAATAAATCATGAGTCAGAGGTTAACAACAACAATCGAGATTAAACTACGA
1 AATAA-AAGATCGAGATTAAACCATGAGTCAAAGGATAACAACAACAATCGAGATTAAACTACGA
*
7623224 CTTTAAATTAAAGAGATCGAGATTGAATCACGAATTAGAGAATAAAAAAATTAAGATTAAACCAC
65 CTTTAAATTAAAGAGATCGAGATTGAATCACGAATTAGAGAATAAAAAAATCAAGATTAAACCAC
*
7623289 GAGTCAGAAGATAACAACAACAATCGAGATTAAACTATGATTTTAAATTAAAGAGATC-AGGATT
130 GAGTCA-AA-A-AACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGA-GATT
*
7623353 GAACCATAAATCGAAG
191 GAACCACAAATCGAAG
* * *
7623369 AATAAAAGGATCGGGATTAAACCATGAGTCAAATGATAACAACAACAATCGAGATTAAACTGCGA
1 AATAAAA-GATCGAGATTAAACCATGAGTCAAAGGATAACAACAACAATCGAGATTAAACTACGA
* * *
7623434 TTTTAAATTAAAGAGATCGAGATTGAATCACGAATCT-GAGAATAAAAAGATCAGGATTAAACCA
65 CTTTAAATTAAAGAGATCGAGATTGAATCACGAAT-TAGAGAATAAAAAAATCAAGATTAAACCA
* *
7623498 CGAGTCAAAAAATAATAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGAGATTGAA
129 CGAGTCAAAAAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGAGATTGAA
* *
7623563 CCGCGAATCGAAG
194 CCACAAATCGAAG
*
7623576 AATAAAAAGATCGAGATTAAACCACGAGTCAAAG
1 AAT-AAAAGATCGAGATTAAACCATGAGTCAAAG
7623610 ATTAAAGATA
Statistics
Matches: 217, Mismatches: 20, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
207 86 0.40
208 6 0.03
209 4 0.02
210 120 0.55
211 1 0.00
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.21
Consensus pattern (206 bp):
AATAAAAGATCGAGATTAAACCATGAGTCAAAGGATAACAACAACAATCGAGATTAAACTACGAC
TTTAAATTAAAGAGATCGAGATTGAATCACGAATTAGAGAATAAAAAAATCAAGATTAAACCACG
AGTCAAAAAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGAGATTGAACC
ACAAATCGAAG
Found at i:7623556 original size:102 final size:104
Alignment explanation
Indices: 7623195--7623611 Score: 585
Period size: 105 Copynumber: 4.0 Consensus size: 104
7623185 AGTCAGAGGT
* *
7623195 TAACAACAACAATCGAGATTAAACTACGACTTTAAATTAAAGAGATCGAGATTGAATCACGAAT-
1 TAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGAGATTGAACCACGAATC
* * * *
7623259 TAGAGAATAAAAAAATTAAGATTAAACCACGAGTCAGAAGA
66 GA-AGAATAAAAAGATCAGGATTAAACCACGAGTCA-AAGA
* **
7623300 TAACAACAACAATCGAGATTAAACTATGATTTTAAATTAAAGAGATC-AGGATTGAACCATAAAT
1 TAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGA-GATTGAACCACGAAT
* * *
7623364 CGAAGAATAAAAGGATCGGGATTAAACCATGAGTCAAATGA
65 CGAAGAATAAAAAGATCAGGATTAAACCACGAGTCAAA-GA
* *
7623405 TAACAACAACAATCGAGATTAAACTGCGATTTTAAATTAAAGAGATCGAGATTGAATCACGAATC
1 TAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGAGATTGAACCACGAATC
7623470 TG-AGAATAAAAAGATCAGGATTAAACCACGAGTCAAA-A
66 -GAAGAATAAAAAGATCAGGATTAAACCACGAGTCAAAGA
* * *
7623508 -AATAATAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGAGATTGAACCGCGAATC
1 TAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGAGATTGAACCACGAATC
7623572 GAAGAATAAAAAGATC-GAGATTAAACCACGAGTCAAAGA
66 GAAGAATAAAAAGATCAG-GATTAAACCACGAGTCAAAGA
7623611 T
1 T
7623612 TAAAGATAAC
Statistics
Matches: 278, Mismatches: 25, Indels: 19
0.86 0.08 0.06
Matches are distributed among these distances:
101 2 0.01
102 92 0.33
103 2 0.01
104 3 0.01
105 176 0.63
106 3 0.01
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.22
Consensus pattern (104 bp):
TAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGAGATTGAACCACGAATC
GAAGAATAAAAAGATCAGGATTAAACCACGAGTCAAAGA
Found at i:7623558 original size:33 final size:33
Alignment explanation
Indices: 7623416--7623559 Score: 98
Period size: 34 Copynumber: 4.3 Consensus size: 33
7623406 AACAACAACA
* *
7623416 ATCGAGATTAAACTGCGATTTTAAATTAAAGAG
1 ATCGAGATTAAACTACGATCTTAAATTAAAGAG
* * *
7623449 ATCGAGATTGAA-TCACGAATCTGAGAA-TAAAAAG
1 ATCGAGATTAAACT-ACG-ATCTTA-AATTAAAGAG
* ** * *
7623483 ATC-AGGATTAAACCACGAGTCAAAAAATAATA-ACA
1 ATCGA-GATTAAACTACGA-TCTTAAATTAA-AGA-G
*
7623518 ATCGAGATTAAACTACGATTTTAAATTAAAGAG
1 ATCGAGATTAAACTACGATCTTAAATTAAAGAG
7623551 ATCGAGATT
1 ATCGAGATT
7623560 GAACCGCGAA
Statistics
Matches: 84, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
32 1 0.01
33 27 0.32
34 37 0.44
35 18 0.21
36 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.17, T:0.25
Consensus pattern (33 bp):
ATCGAGATTAAACTACGATCTTAAATTAAAGAG
Found at i:7623731 original size:109 final size:109
Alignment explanation
Indices: 7623584--7624200 Score: 648
Period size: 109 Copynumber: 5.7 Consensus size: 109
7623574 AGAATAAAAA
* * *
7623584 GATCGAGATTAAACCACGAGTCAAAGATTAAAGATAACT-AGGACTAAACCACAAGTCAAAGAAA
1 GATCGGGATTAAACCACTAGTCAAAGATTAAAGATAACTGA-GACTAAACCGCAAGTCAAAGAAA
**
7623648 TAAAAATGACTAGGATTAAACTGTAAGTCGAGAAGCTATAAGAAT
65 TAAAAATGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGAAT
* * **
7623693 GATTGGGATTAAACCACTAGTCAAAGATTAAAGATAACTGAGACTGAACCATAAGTCAAAGAAAT
1 GATCGGGATTAAACCACTAGTCAAAGATTAAAGATAACTGAGACTAAACCGCAAGTCAAAGAAAT
7623758 AAAAATGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGAAT
66 AAAAATGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGAAT
*
7623802 GATCGGGATTAAACCA-TGAGTCAAAGATTAAAGATAACTGAGACTGAACCGCAAGTCAAAGAAA
1 GATCGGGATTAAACCACT-AGTCAAAGATTAAAGATAACTGAGACTAAACCGCAAGTCAAAGAAA
* * * *
7623866 TAAGAAACGACTAGGATTAAATCATAAGTCAAGAAGAT-TAA-AGAT
65 TAA-AAATGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGA-AT
* * * * * * * * * *
7623911 -AACTGGGACTGAACC-GTAAGTCAAAAAAATAAAAATGACT-AGGA-TAAAATCGTAAGTCGAG
1 GATC-GGGATTAAACCACT-AGTC-AAAGATTAAAGATAACTGA-GACT-AAACCGCAAGTC-A-
** * * * * *
7623972 AAGCTATAAGAATG-GTCGGGATTAAACCATGAGT-TA-AAGCTATAAGAAT
59 AAGAAATAAAAATGACT-AGGATTAAACCATAAGTCGAGAAGCTATAAGAAT
* *
7624021 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATAACTGAGACTAAACTGCAAGTCAAAGAAAT
1 GATCGGGATTAAACCACTAGTCAAAGATTAAAGATAACTGAGACTAAACCGCAAGTCAAAGAAAT
*
7624086 AAAAATGACTAGGATTAAACCGTAAGTCGAGAAGCTATAAGAAT
66 AAAAATGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGAAT
* * * * ** *
7624130 GATCAGGATTAAACCACAAATCAAAGATTAAGGACGA-TCGAGACTGAACCGCAAGTCAGAA-AA
1 GATCGGGATTAAACCACTAGTCAAAGATTAAAGATAACT-GAGACTAAACCGCAAGTCA-AAGAA
7624193 ATAAAAAT
64 ATAAAAAT
7624201 AACCATAACT
Statistics
Matches: 422, Mismatches: 63, Indels: 46
0.79 0.12 0.09
Matches are distributed among these distances:
107 25 0.06
108 8 0.02
109 282 0.67
110 79 0.19
111 21 0.05
112 7 0.02
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.19
Consensus pattern (109 bp):
GATCGGGATTAAACCACTAGTCAAAGATTAAAGATAACTGAGACTAAACCGCAAGTCAAAGAAAT
AAAAATGACTAGGATTAAACCATAAGTCGAGAAGCTATAAGAAT
Found at i:7623812 original size:38 final size:37
Alignment explanation
Indices: 7623590--7624161 Score: 235
Period size: 36 Copynumber: 15.7 Consensus size: 37
7623580 AAAAGATCGA
** * *
7623590 GATTAAACCACGAGTCAAAGAT-TAA-AGAT-AACTAG
1 GATTAAACCATAAGTCAAAGATATAAGA-ATGATCTGG
* * * * *
7623625 GACTAAACCACAAGTCAAAGAAATAAAAATGA-CTAG
1 GATTAAACCATAAGTCAAAGATATAAGAATGATCTGG
** *
7623661 GATTAAACTGTAAGTCGAGAAGCTATAAGAATGAT-TGG
1 GATTAAACCATAAGTC-A-AAGATATAAGAATGATCTGG
* *
7623699 GATTAAACCACT-AGTCAAAGAT-TAA-AGAT-AACTGA
1 GATTAAACCA-TAAGTCAAAGATATAAGA-ATGATCTGG
* * * * *
7623734 GACTGAACCATAAGTCAAAGAAATAAAAATGA-CTAG
1 GATTAAACCATAAGTCAAAGATATAAGAATGATCTGG
*
7623770 GATTAAACCATAAGTCGAGAAGCTATAAGAATGATC-GG
1 GATTAAACCATAAGTC-A-AAGATATAAGAATGATCTGG
* * *
7623808 GATTAAACCATGAGTCAAAGAT-TAA-AGAT-AACTGA
1 GATTAAACCATAAGTCAAAGATATAAGA-ATGATCTGG
* * ** * * *
7623843 GACTGAACCGCAAGTCAAAGAAATAAGAAACGA-CTAG
1 GATTAAACCATAAGTCAAAGATATAAG-AATGATCTGG
* *
7623880 GATTAAATCATAAGTCAAGAAGAT-TAA-AGAT-AACTGG
1 GATTAAACCATAAGTC-A-AAGATATAAGA-ATGATCTGG
* * * * * * *
7623917 GACTGAACCGTAAGTCAAAAAAATAAAAATGA-CTAG
1 GATTAAACCATAAGTCAAAGATATAAGAATGATCTGG
* * * * *
7623953 GATAAAATCGTAAGTCGAGAAGCTATAAGAATGGTC-GG
1 GATTAAACCATAAGTC-A-AAGATATAAGAATGATCTGG
* * *
7623991 GATTAAACCATGAGTTAAAGCTATAAGAATGATC-GG
1 GATTAAACCATAAGTCAAAGATATAAGAATGATCTGG
** * *
7624027 GATTAAACCACGAGTCAAAGAT-TAA-AGAT-AACTGA
1 GATTAAACCATAAGTCAAAGATATAAGA-ATGATCTGG
* *** * * *
7624062 GACTAAACTGCAAGTCAAAGAAATAAAAATGA-CTAG
1 GATTAAACCATAAGTCAAAGATATAAGAATGATCTGG
* * *
7624098 GATTAAACCGTAAGTCGAGAAGCTATAAGAATGATC-AG
1 GATTAAACCATAAGTC-A-AAGATATAAGAATGATCTGG
* *
7624136 GATTAAACCACAAATCAAAGAT-TAAG
1 GATTAAACCATAAGTCAAAGATATAAG
7624162 GACGATCGAG
Statistics
Matches: 404, Mismatches: 93, Indels: 80
0.70 0.16 0.14
Matches are distributed among these distances:
34 9 0.02
35 95 0.24
36 137 0.34
37 46 0.11
38 109 0.27
39 8 0.02
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.20
Consensus pattern (37 bp):
GATTAAACCATAAGTCAAAGATATAAGAATGATCTGG
Found at i:7625267 original size:21 final size:24
Alignment explanation
Indices: 7625243--7625291 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
7625233 TCCTTTTCTA
7625243 TTTTATTTTT-T-T-TTGTTTGTT
1 TTTTATTTTTATATATTGTTTGTT
*
7625264 TTTTATTTTTATATATTTTTTGTT
1 TTTTATTTTTATATATTGTTTGTT
7625288 TTTT
1 TTTT
7625292 TAAGCAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 10 0.42
22 1 0.04
23 1 0.04
24 12 0.50
ACGTcount: A:0.10, C:0.00, G:0.06, T:0.84
Consensus pattern (24 bp):
TTTTATTTTTATATATTGTTTGTT
Found at i:7636139 original size:15 final size:15
Alignment explanation
Indices: 7636121--7636201 Score: 74
Period size: 15 Copynumber: 5.3 Consensus size: 15
7636111 AGGTTTTGAA
*
7636121 GGTTTGGTTTTTAGG
1 GGTTTGGATTTTAGG
*
7636136 GGTTTGGATTTAAGG
1 GGTTTGGATTTTAGG
*
7636151 GATTTTGGATTTT-GG
1 G-GTTTGGATTTTAGG
* *
7636166 GGTTTGGATTTAAAG
1 GGTTTGGATTTTAGG
**
7636181 AATTTCGGATTTTAGG
1 GGTTT-GGATTTTAGG
7636197 GGTTT
1 GGTTT
7636202 TAGAAAATGC
Statistics
Matches: 50, Mismatches: 13, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
14 9 0.18
15 21 0.42
16 20 0.40
ACGTcount: A:0.17, C:0.01, G:0.35, T:0.47
Consensus pattern (15 bp):
GGTTTGGATTTTAGG
Found at i:7636147 original size:14 final size:14
Alignment explanation
Indices: 7636130--7636177 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
7636120 AGGTTTGGTT
7636130 TTTAGGGGTTTGGA
1 TTTAGGGGTTTGGA
*
7636144 TTTAAGGGATTTTGGA
1 TTT-AGGG-GTTTGGA
*
7636160 TTTTGGGGTTTGGA
1 TTTAGGGGTTTGGA
7636174 TTTA
1 TTTA
7636178 AAGAATTTCG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 12 0.43
15 7 0.25
16 9 0.32
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.48
Consensus pattern (14 bp):
TTTAGGGGTTTGGA
Found at i:7636159 original size:16 final size:16
Alignment explanation
Indices: 7636138--7636202 Score: 53
Period size: 16 Copynumber: 4.2 Consensus size: 16
7636128 TTTTTAGGGG
7636138 TTTGGATTTAAGGGAT
1 TTTGGATTTAAGGGAT
* *
7636154 TTTGGATTT-TGGG-G
1 TTTGGATTTAAGGGAT
* *
7636168 TTTGGATTTAAAGAAT
1 TTTGGATTTAAGGGAT
* * *
7636184 TTCGGATTTTAGGGGT
1 TTTGGATTTAAGGGAT
7636200 TTT
1 TTT
7636203 AGAAAATGCG
Statistics
Matches: 35, Mismatches: 12, Indels: 4
0.69 0.24 0.08
Matches are distributed among these distances:
14 9 0.26
15 4 0.11
16 22 0.63
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.48
Consensus pattern (16 bp):
TTTGGATTTAAGGGAT
Found at i:7636168 original size:30 final size:31
Alignment explanation
Indices: 7636123--7636201 Score: 115
Period size: 30 Copynumber: 2.6 Consensus size: 31
7636113 GTTTTGAAGG
* * *
7636123 TTTGGTTTTTAGGGGTTTGGATTTAAGGGAT
1 TTTGGATTTTAGGGGTTTGGATTTAAAGAAT
7636154 TTTGGATTTT-GGGGTTTGGATTTAAAGAAT
1 TTTGGATTTTAGGGGTTTGGATTTAAAGAAT
*
7636184 TTCGGATTTTAGGGGTTT
1 TTTGGATTTTAGGGGTTT
7636202 TAGAAAATGC
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
30 27 0.63
31 16 0.37
ACGTcount: A:0.18, C:0.01, G:0.33, T:0.48
Consensus pattern (31 bp):
TTTGGATTTTAGGGGTTTGGATTTAAAGAAT
Found at i:7637631 original size:24 final size:23
Alignment explanation
Indices: 7637599--7637645 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
7637589 AGGTGATTAA
*
7637599 AGGGGTGGGAGTTAGGGCATGGTG
1 AGGGATGGGAG-TAGGGCATGGTG
*
7637623 AGGGATGGGTGTAGGGCATGGTG
1 AGGGATGGGAGTAGGGCATGGTG
7637646 GCAGTGGTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.17, C:0.04, G:0.57, T:0.21
Consensus pattern (23 bp):
AGGGATGGGAGTAGGGCATGGTG
Found at i:7637722 original size:19 final size:19
Alignment explanation
Indices: 7637698--7637734 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7637688 TTATTCTTTT
*
7637698 TTTTTGGTATTTTGTATTA
1 TTTTTGGTATTTTATATTA
7637717 TTTTTGGTATTTTATATT
1 TTTTTGGTATTTTATATT
7637735 TTGTATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.14, T:0.70
Consensus pattern (19 bp):
TTTTTGGTATTTTATATTA
Found at i:7637755 original size:25 final size:25
Alignment explanation
Indices: 7637705--7637799 Score: 127
Period size: 26 Copynumber: 3.7 Consensus size: 25
7637695 TTTTTTTTGG
* *
7637705 TATTTTGTATTATTTTTGGTATTTTA
1 TATTTTGTATT-TTTTTTGTATTTAA
7637731 TATTTTGTATTATTTTTTGTATTTAA
1 TATTTTGTATT-TTTTTTGTATTTAA
** *
7637757 TATTTAATATTTTTTTTGTATTTCA
1 TATTTTGTATTTTTTTTGTATTTAA
7637782 TATTTTGTATTTTTTTTG
1 TATTTTGTATTTTTTTTG
7637800 GACAAATTTG
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 29 0.47
26 33 0.53
ACGTcount: A:0.20, C:0.01, G:0.08, T:0.71
Consensus pattern (25 bp):
TATTTTGTATTTTTTTTGTATTTAA
Found at i:7638808 original size:109 final size:109
Alignment explanation
Indices: 7638672--7639188 Score: 716
Period size: 109 Copynumber: 4.8 Consensus size: 109
7638662 CTGACTTGTA
* * *
7638672 GTTCAGTCTC-GATTGTCGTTAATCTTTGACTCGTGGTTTAACCCCGATCATTCTTATAGCTTCT
1 GTTCAGTCTCAG-TTATCTTTAATCTTTGACTCGTGGTTTAATCCCGATCATTCTTATAGCTTCT
* *
7638736 CGACTTACGGTTTAATCCTAATCGCTTTTATTTCTTTAACTTACG
65 CGACTTACGGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTACG
* **
7638781 GTTTAGTCTCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCTTGATCATTCTTATAGCTTCTC
1 GTTCAGTCTCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCCCGATCATTCTTATAGCTTCTC
* * *
7638846 GACTTACGGTTTAATCCTAGTCACTTTTATTTCTTTGACTTGCA
66 GACTTACGGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTACG
* ** * * *
7638890 GTTCAGTC-CCGATCGTCGTTAGTCTTTGACTCTTGGTTTAATCCCGATCATTCTTATAGCTTCT
1 GTTCAGTCTCAG-TTATCTTTAATCTTTGACTCGTGGTTTAATCCCGATCATTCTTATAGCTTCT
*
7638954 CGACTTACGGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTGCG
65 CGACTTACGGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTACG
* *
7638999 GTTCAATCTCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCTCGATCATTCTTATAGCTTCTC
1 GTTCAGTCTCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCCCGATCATTCTTATAGCTTCTC
* * *
7639064 GACTTACGATTTATTCCTAGTCGCTTTTATTTCTCTGACTTACG
66 GACTTACGGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTACG
* * * * * *
7639108 ATTCCGTCTCAATTATCTTTAATCTTTGACTCGTGGTTTAATCCCGATCATTTTTATAG-TTTTT
1 GTTCAGTCTCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCCCGATCATTCTTATAGCTTCTC
* *
7639172 GAATTACAGTTTAATCC
66 GACTTACGGTTTAATCC
7639189 CAGCCTTCTT
Statistics
Matches: 359, Mismatches: 46, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
108 18 0.05
109 338 0.94
110 3 0.01
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.45
Consensus pattern (109 bp):
GTTCAGTCTCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCCCGATCATTCTTATAGCTTCTC
GACTTACGGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTACG
Found at i:7638969 original size:38 final size:36
Alignment explanation
Indices: 7638706--7638971 Score: 118
Period size: 38 Copynumber: 7.3 Consensus size: 36
7638696 TTTGACTCGT
*
7638706 GGTTTAACCCCGATCATTCTTATAGCTTCTCGACTTAC
1 GGTTTAATCCCGATCATTCTTATAGCTT-T-GACTTAC
** * ** *
7638744 GGTTTAATCCTAATCGCTT-TTATTTCTTTAACTTAC
1 GGTTTAATCCCGATC-ATTCTTATAGCTTTGACTTAC
* * * * ***
7638780 GGTTTAGTCTC-AGTTA-TCTT-TAATCTTTGACTCGT
1 GGTTTAATCCCGA-TCATTCTTAT-AGCTTTGACTTAC
**
7638815 GGTTTAATCTTGATCATTCTTATAGCTTCTCGACTTAC
1 GGTTTAATCCCGATCATTCTTATAGCTT-T-GACTTAC
* ** *
7638853 GGTTTAAT-CCTAGTCACTT-TTATTTCTTTGACTTGC
1 GGTTTAATCCCGA-TCA-TTCTTATAGCTTTGACTTAC
* * * * * *
7638889 AGTTCAGTCCCGATC-GTCGT-TAGTCTTTGACTCT-T
1 GGTTTAATCCCGATCATTCTTATAG-CTTTGACT-TAC
7638924 GGTTTAATCCCGATCATTCTTATAGCTTCTCGACTTAC
1 GGTTTAATCCCGATCATTCTTATAGCTT-T-GACTTAC
7638962 GGTTTAATCC
1 GGTTTAATCC
7638972 TAGTCGCTTT
Statistics
Matches: 163, Mismatches: 45, Indels: 40
0.66 0.18 0.16
Matches are distributed among these distances:
34 4 0.02
35 43 0.26
36 44 0.27
37 13 0.08
38 55 0.34
39 4 0.02
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.44
Consensus pattern (36 bp):
GGTTTAATCCCGATCATTCTTATAGCTTTGACTTAC
Found at i:7639028 original size:218 final size:218
Alignment explanation
Indices: 7638650--7639188 Score: 812
Period size: 218 Copynumber: 2.5 Consensus size: 218
7638640 AGTTGTGGTT
* * *
7638650 ACTTTTATTTCCCTGACTTGTAGTTCAGTCTCGATTGTCGTTAATCTTTGACTCGTGGTTTAACC
1 ACTTTTATTTCTCTGACTTGCAGTTCAGTCTCGATTGTCGTTAATCTTTGACTCGTGGTTTAATC
7638715 CCGATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAATCGCTTTTATTTCTTTAACTTAC
66 CCGATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAATCGCTTTTATTTCTTTAACTTAC
* * *
7638780 GGTTTAGTCTCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCTTGATCATTCTTATAGCTTCT
131 GGTTCAATCTCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCTCGATCATTCTTATAGCTTCT
*
7638845 CGACTTACGGTTTAATCCTAGTC
196 CGACTTACGATTTAATCCTAGTC
* * * * *
7638868 ACTTTTATTTCTTTGACTTGCAGTTCAGTCCCGATCGTCGTTAGTCTTTGACTCTTGGTTTAATC
1 ACTTTTATTTCTCTGACTTGCAGTTCAGTCTCGATTGTCGTTAATCTTTGACTCGTGGTTTAATC
* * *
7638933 CCGATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTGC
66 CCGATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAATCGCTTTTATTTCTTTAACTTAC
7638998 GGTTCAATCTCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCTCGATCATTCTTATAGCTTCT
131 GGTTCAATCTCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCTCGATCATTCTTATAGCTTCT
*
7639063 CGACTTACGATTTATTCCTAGTC
196 CGACTTACGATTTAATCCTAGTC
* * * * * *
7639086 GCTTTTATTTCTCTGACTTAC-GATTCCGTCTCAATTATCTTTAATCTTTGACTCGTGGTTTAAT
1 ACTTTTATTTCTCTGACTTGCAG-TTCAGTCTCGATTGTCGTTAATCTTTGACTCGTGGTTTAAT
* * * * *
7639150 CCCGATCATTTTTATAG-TTTTTGAATTACAGTTTAATCC
65 CCCGATCATTCTTATAGCTTCTCGACTTACGGTTTAATCC
7639189 CAGCCTTCTT
Statistics
Matches: 288, Mismatches: 32, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
217 19 0.07
218 269 0.93
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (218 bp):
ACTTTTATTTCTCTGACTTGCAGTTCAGTCTCGATTGTCGTTAATCTTTGACTCGTGGTTTAATC
CCGATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAATCGCTTTTATTTCTTTAACTTAC
GGTTCAATCTCAGTTATCTTTAATCTTTGACTCGTGGTTTAATCTCGATCATTCTTATAGCTTCT
CGACTTACGATTTAATCCTAGTC
Found at i:7639314 original size:68 final size:68
Alignment explanation
Indices: 7639231--7639470 Score: 202
Period size: 68 Copynumber: 3.5 Consensus size: 68
7639221 CTTAATCTCT
* *
7639231 TTATATTCTGACTCGTGGTTCAATCCCGATTTCTTTAATCCAAAATCGTAGGTTAATCTCGATTG
1 TTATTTTCTGACTCGTGGTTCAATCCCGATCTCTTTAATCCAAAATCGTAGGTTAATCTCGATTG
7639296 TTG
66 TTG
* * * * * * ** * * *
7639299 TTATTTTCTAACTCGTGGTTTAATCCTGGTCTCTTTATTTTC-TGA-CTTATGATTCAATC-CAA
1 TTATTTTCTGACTCGTGGTTCAATCCCGATCTCTTTA-ATCCAAAATCGTA-GGTT-AATCTCGA
*
7639361 GTTGATG
63 -TTGTTG
* ** * * *
7639368 TTA--TTATGACTCACGGTTCAATCCTGATTTCTTTAATCTAAAATCGTAGGTTAATCTCGATTG
1 TTATTTTCTGACTCGTGGTTCAATCCCGATCTCTTTAATCCAAAATCGTAGGTTAATCTCGATTG
7639431 TTG
66 TTG
* * *
7639434 TTATTTTTTGACTCGTGGTTTAATCTCGATCTCTTTA
1 TTATTTTCTGACTCGTGGTTCAATCCCGATCTCTTTA
7639471 TTTTCTAACT
Statistics
Matches: 126, Mismatches: 37, Indels: 18
0.70 0.20 0.10
Matches are distributed among these distances:
66 13 0.10
67 34 0.27
68 65 0.52
69 14 0.11
ACGTcount: A:0.22, C:0.17, G:0.15, T:0.45
Consensus pattern (68 bp):
TTATTTTCTGACTCGTGGTTCAATCCCGATCTCTTTAATCCAAAATCGTAGGTTAATCTCGATTG
TTG
Found at i:7639530 original size:67 final size:67
Alignment explanation
Indices: 7639304--7639525 Score: 182
Period size: 67 Copynumber: 3.3 Consensus size: 67
7639294 TGTTGTTATT
* * * *
7639304 TTCTAACTCGTGGTTTAATCCTGGTCTCTTTATTTTCTGACTTATGATTCAATCCAAGTTGATGT
1 TTCTAACTCGCGGTTCAATCCTGATCTCTTTATTTTCTAACTTATGATTCAATCCAAGTTGATGT
7639369 TA
66 TA
* * * * * * ** * * * *
7639371 TTATGACTCACGGTTCAATCCTGATTTCTTTAATCTAAAATCGTA-GGTT-AATCTCGA-TTGTT
1 TTCTAACTCGCGGTTCAATCCTGATCTCTTTATTTTCTAA-CTTATGATTCAATC-CAAGTTGAT
7639433 GTTA
64 GTTA
* * * *
7639437 TTTTTTGACTCGTGGTTTAAT-CTCGATCTCTTTATTTTCTAACTTATGATTCAATCCAAGTTGA
1 --TTCTAACTCGCGGTTCAATCCT-GATCTCTTTATTTTCTAACTTATGATTCAATCCAAGTTGA
*
7639501 CGTTA
63 TGTTA
7639506 TTCTAACTCGCGGTTCAATC
1 TTCTAACTCGCGGTTCAATC
7639526 TCGATTTTTT
Statistics
Matches: 112, Mismatches: 34, Indels: 17
0.69 0.21 0.10
Matches are distributed among these distances:
66 12 0.11
67 53 0.47
68 36 0.32
69 11 0.10
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (67 bp):
TTCTAACTCGCGGTTCAATCCTGATCTCTTTATTTTCTAACTTATGATTCAATCCAAGTTGATGT
TA
Found at i:7639594 original size:135 final size:135
Alignment explanation
Indices: 7639234--7639597 Score: 536
Period size: 135 Copynumber: 2.7 Consensus size: 135
7639224 AATCTCTTTA
* *
7639234 TATTCTGACTCGTGGTTCAATCCCGATTTCTTTAATCCAAAATCGTAGGTTAATCTCGATTGTTG
1 TATTCTGACTCGCGGTTCAAT-CCGATTTCTTTAATCTAAAATCGTAGGTTAATCTCGATTGTTG
* * * *
7639299 TTATTTTCTAACTCGTGGTTTAATC-CTGGTCTCTTTATTTTCTGACTTATGATTCAATCCAAGT
65 TTATTTTTTGACTCGTGGTTTAATCTCTGATCTCTTTATTTTCTAACTTATGATTCAATCCAAGT
*
7639363 TGATGT
130 TGACGT
* *
7639369 TATTATGACTCACGGTTCAATCCTGATTTCTTTAATCTAAAATCGTAGGTTAATCTCGATTGTTG
1 TATTCTGACTCGCGGTTCAATCC-GATTTCTTTAATCTAAAATCGTAGGTTAATCTCGATTGTTG
7639434 TTATTTTTTGACTCGTGGTTTAATCTC-GATCTCTTTATTTTCTAACTTATGATTCAATCCAAGT
65 TTATTTTTTGACTCGTGGTTTAATCTCTGATCTCTTTATTTTCTAACTTATGATTCAATCCAAGT
7639498 TGACGT
130 TGACGT
* * * **
7639504 TATTCTAACTCGCGGTTCAATCTCGATTT-TTTCAATCTAAAATCATAGTTTAATCTTAATTGTT
1 TATTCTGACTCGCGGTTCAATC-CGATTTCTTT-AATCTAAAATCGTAGGTTAATCTCGATTGTT
*
7639568 GTTATTTTTTGACTCGTTGTTTAATCTCTG
64 GTTATTTTTTGACTCGTGGTTTAATCTCTG
7639598 TTAATCTCGA
Statistics
Matches: 207, Mismatches: 17, Indels: 9
0.89 0.07 0.04
Matches are distributed among these distances:
134 5 0.02
135 199 0.96
136 3 0.01
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.46
Consensus pattern (135 bp):
TATTCTGACTCGCGGTTCAATCCGATTTCTTTAATCTAAAATCGTAGGTTAATCTCGATTGTTGT
TATTTTTTGACTCGTGGTTTAATCTCTGATCTCTTTATTTTCTAACTTATGATTCAATCCAAGTT
GACGT
Found at i:7639604 original size:45 final size:45
Alignment explanation
Indices: 7639553--7639638 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
7639543 AAATCATAGT
* * *
7639553 TTAATCTTAATTGTTGTTATTTTTTGACTCGTTGTTTAATCTCTG
1 TTAATCTCAATTGTTATTATTTTTTGACTCGTGGTTTAATCTCTG
*
7639598 TTAATCTCGATTGTTATTATTTTTTGACTCGTGGTTTAATC
1 TTAATCTCAATTGTTATTATTTTTTGACTCGTGGTTTAATC
7639639 CCGATCTCTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.19, C:0.12, G:0.14, T:0.56
Consensus pattern (45 bp):
TTAATCTCAATTGTTATTATTTTTTGACTCGTGGTTTAATCTCTG
Found at i:7639625 original size:180 final size:180
Alignment explanation
Indices: 7639417--7639773 Score: 565
Period size: 180 Copynumber: 2.0 Consensus size: 180
7639407 AAAATCGTAG
* *
7639417 GTTAATCTCGATTGTTGTTATTTTTTGACTCGTGGTTTAATCTCGATCTCTTTATTTTCTAACTT
1 GTTAATCTCGATTGTTATTATTTTTTGACTCGTGGTTTAATCCCGATCTCTTTATTTTCTAACTT
* * *
7639482 ATGATTCAATCCAAGTTGACGTTATTCTAACTCGCGGTTCAATCTCGATTT-TTTCAATCTAAAA
66 ATGATTCAATCAAAGTTGACGTTATTCTAACTCGCGGTTCAATCTCGATTTCATT-AATCCAAAA
* * * *
7639546 TCATAGTTTAATCTTAATTGTTGTTATTTTT-TGACTCGTTGTTTAATCTCT
130 TCATAGTTTAATCTCAATTATTGTT-TTTTTCTGACTCATGGTTTAATCTCT
* *
7639597 GTTAATCTCGATTGTTATTATTTTTTGACTCGTGGTTTAATCCCGATCTCTTTATTTTCTGATTT
1 GTTAATCTCGATTGTTATTATTTTTTGACTCGTGGTTTAATCCCGATCTCTTTATTTTCTAACTT
*
7639662 GTGATTCAATCAAAGTTGACGTTATTCTAACTCGCGGTTCAATCTCGATTTCATTAATCCAAAAT
66 ATGATTCAATCAAAGTTGACGTTATTCTAACTCGCGGTTCAATCTCGATTTCATTAATCCAAAAT
*
7639727 CATAGTTTAATCTCGATTATTGTTTTTTTCTGACTCATGGTTTAATC
131 CATAGTTTAATCTCAATTATTGTTTTTTTCTGACTCATGGTTTAATC
7639774 CTGGTCTCTG
Statistics
Matches: 162, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
179 5 0.03
180 155 0.96
181 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.13, T:0.48
Consensus pattern (180 bp):
GTTAATCTCGATTGTTATTATTTTTTGACTCGTGGTTTAATCCCGATCTCTTTATTTTCTAACTT
ATGATTCAATCAAAGTTGACGTTATTCTAACTCGCGGTTCAATCTCGATTTCATTAATCCAAAAT
CATAGTTTAATCTCAATTATTGTTTTTTTCTGACTCATGGTTTAATCTCT
Found at i:7641269 original size:18 final size:19
Alignment explanation
Indices: 7641228--7641277 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
7641218 CAGGTAAAAA
*
7641228 AATTTTTTTATTATTTTCT
1 AATTTTTTTATTATTATCT
7641247 AATTTTTTTATATATTAT-T
1 AATTTTTTTAT-TATTATCT
7641266 -ATTTTTGTTATT
1 AATTTTT-TTATT
7641278 TTAAGTATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 7 0.25
19 16 0.57
20 5 0.18
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (19 bp):
AATTTTTTTATTATTATCT
Found at i:7641271 original size:19 final size:18
Alignment explanation
Indices: 7641230--7641296 Score: 57
Period size: 19 Copynumber: 3.7 Consensus size: 18
7641220 GGTAAAAAAA
* *
7641230 TTTTTTTATTATTTTCTAA
1 TTTTTTTATTATTAT-TAT
7641249 TTTTTTTATATATTATTAT
1 TTTTTTTAT-TATTATTAT
* *
7641268 TTTTGTTATT-TTAAGTAT
1 TTTTTTTATTATT-ATTAT
7641286 TTTTTTT-TTAT
1 TTTTTTTATTAT
7641297 ATTTATGCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
17 4 0.10
18 12 0.30
19 19 0.47
20 5 0.12
ACGTcount: A:0.21, C:0.01, G:0.03, T:0.75
Consensus pattern (18 bp):
TTTTTTTATTATTATTAT
Found at i:7641291 original size:21 final size:21
Alignment explanation
Indices: 7641262--7641301 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7641252 TTTTATATAT
7641262 TATTATTTTTGTTAT-TTTAAG
1 TATTATTTTT-TTATATTTAAG
*
7641283 TATTTTTTTTTTATATTTA
1 TATTATTTTTTTATATTTA
7641302 TGCATGATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (21 bp):
TATTATTTTTTTATATTTAAG
Found at i:7642110 original size:13 final size:15
Alignment explanation
Indices: 7642076--7642111 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
7642066 GACATCAAAT
7642076 AATAATATAATTAAA
1 AATAATATAATTAAA
7642091 AATAATATAA-TAAA
1 AATAATATAATTAAA
7642105 AA-AATAT
1 AATAATAT
7642112 TATTCAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 5 0.24
14 6 0.29
15 10 0.48
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AATAATATAATTAAA
Found at i:7643275 original size:15 final size:16
Alignment explanation
Indices: 7643255--7643287 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7643245 TTATACCGTG
7643255 TTTTCTATT-TTTCAT
1 TTTTCTATTCTTTCAT
*
7643270 TTTTCTTTTCTTTCAT
1 TTTTCTATTCTTTCAT
7643286 TT
1 TT
7643288 CCATCCTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.09, C:0.15, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTCTATTCTTTCAT
Found at i:7646805 original size:9 final size:9
Alignment explanation
Indices: 7646791--7646824 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
7646781 AGAAATGCTT
7646791 AAAAAATAC
1 AAAAAATAC
*
7646800 AAAAAATATA
1 AAAAAATA-C
7646810 AAAAAATAC
1 AAAAAATAC
7646819 AAAAAA
1 AAAAAA
7646825 AAACAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAATAC
Found at i:7646832 original size:19 final size:19
Alignment explanation
Indices: 7646791--7646833 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
7646781 AGAAATGCTT
*
7646791 AAAAAATACAAAAAATATA
1 AAAAAATACAAAAAATAAA
7646810 AAAAAATACAAAAAA-AAA
1 AAAAAATACAAAAAATAAA
7646828 CAAAAA
1 -AAAAA
7646834 GCAAAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 2 0.09
19 20 0.91
ACGTcount: A:0.84, C:0.07, G:0.00, T:0.09
Consensus pattern (19 bp):
AAAAAATACAAAAAATAAA
Found at i:7648043 original size:109 final size:109
Alignment explanation
Indices: 7647874--7648254 Score: 474
Period size: 109 Copynumber: 3.5 Consensus size: 109
7647864 TTATGGTTAT
* * * * * * * *
7647874 TTTTATTTCTCTGACTTGCGGTTCAGTCTCAGTCATCGTTAATCTTTTATTCGTGATTTAATCTT
1 TTTTATTTCTTTGACTTACGGTTCAATCCCAGTCATCGTTAATCTTTGACTCATGATTTAATCTC
* * *
7647939 GATCATTCCTATAGCTTCTCGACTTATGGTTTAATCCTAGTTGC
66 GATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAGTCGC
* * * * *
7647983 TTTTATTTCTTTGACTTACGGTTCAATCTCAGTTATCTTTAATCTTTGACTCATGGTTTAATCCC
1 TTTTATTTCTTTGACTTACGGTTCAATCCCAGTCATCGTTAATCTTTGACTCATGATTTAATCTC
*
7648048 GATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCGC
66 GATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAGTCGC
* * * * * **
7648092 TTTTATTTCTTTGACTTATGGTTCAGTCCCGGTCGTCATTAATCTTTGACTTGTGATTTAATCTC
1 TTTTATTTCTTTGACTTACGGTTCAATCCCAGTCATCGTTAATCTTTGACTCATGATTTAATCTC
* * *
7648157 GATCATTCTTATAGCTTTTTGACTTACGATTTAATCCTAGTCGC
66 GATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAGTCGC
* * * * *
7648201 ATTTATTTCTTTGACTTGCGATTCAATCCCGGTCGTCGTTAATCTTTGACTCAT
1 TTTTATTTCTTTGACTTACGGTTCAATCCCAGTCATCGTTAATCTTTGACTCAT
7648255 CTTGACTTAC
Statistics
Matches: 234, Mismatches: 38, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
109 234 1.00
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (109 bp):
TTTTATTTCTTTGACTTACGGTTCAATCCCAGTCATCGTTAATCTTTGACTCATGATTTAATCTC
GATCATTCTTATAGCTTCTCGACTTACGGTTTAATCCTAGTCGC
Found at i:7648318 original size:81 final size:81
Alignment explanation
Indices: 7648175--7648335 Score: 241
Period size: 81 Copynumber: 2.0 Consensus size: 81
7648165 TTATAGCTTT
* * *
7648175 TTGACTTACGATTTAATCCTAGTCGCATTTATTTCTTTGACTTGCGATTCAATCCCGGTCGTCGT
1 TTGACTTACGATTTAATCCTAGTCACATTTATTTCTTTGACTTGCGATTCAATCCCGATCGTCAT
7648240 TAATCTTTGACTCATC
66 TAATCTTTGACTCATC
* * * * * *
7648256 TTGACTTACGGTTTAATCCTAGTCACTTTTATTTCTTTGACTTGTGGTTCAGTCTCGATCGTCAT
1 TTGACTTACGATTTAATCCTAGTCACATTTATTTCTTTGACTTGCGATTCAATCCCGATCGTCAT
7648321 TAATCTTTGACTCAT
66 TAATCTTTGACTCAT
7648336 GGTTTAATCC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (81 bp):
TTGACTTACGATTTAATCCTAGTCACATTTATTTCTTTGACTTGCGATTCAATCCCGATCGTCAT
TAATCTTTGACTCATC
Found at i:7648398 original size:190 final size:190
Alignment explanation
Indices: 7648068--7648415 Score: 561
Period size: 190 Copynumber: 1.8 Consensus size: 190
7648058 ATAGCTTCTC
* *
7648068 GACTTACAGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTATGGTTCAGTCCCGGTCGTCATTA
1 GACTTACAGTTTAATCCTAGTCACTTTTATTTCTTTGACTTATGGTTCAGTCCCGATCGTCATTA
** * * *
7648133 ATCTTTGACTTGTGATTTAATCTCGATCATTCTTATAGCTTTTTGACTTACGATTTAATCCTAGT
66 ATCTTTGACTCATGATTTAATCCCGATCATTCTTATAGCTTATCGACTTACGATTTAATCCTAGT
*
7648198 CGCATTTATTTCTTTGACTTGCGATTCAATCCCGGTCGTCGTTAATCTTTGACTCATCTT
131 CGCATTTATTTCTTTGACTTACGATTCAATCCCGGTCGTCGTTAATCTTTGACTCATCTT
* * *
7648258 GACTTACGGTTTAATCCTAGTCACTTTTATTTCTTTGACTTGTGGTTCAGTCTCGATCGTCATTA
1 GACTTACAGTTTAATCCTAGTCACTTTTATTTCTTTGACTTATGGTTCAGTCCCGATCGTCATTA
* *
7648323 ATCTTTGACTCATGGTTTAATCCCGATCATTCTTATAGCTTATCGACTTACGGTTTAATCCTAGT
66 ATCTTTGACTCATGATTTAATCCCGATCATTCTTATAGCTTATCGACTTACGATTTAATCCTAGT
**
7648388 CGTTTTTATTTCTTTGACTTACGATTCA
131 CGCATTTATTTCTTTGACTTACGATTCA
7648416 GTCTCAATTA
Statistics
Matches: 143, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
190 143 1.00
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.45
Consensus pattern (190 bp):
GACTTACAGTTTAATCCTAGTCACTTTTATTTCTTTGACTTATGGTTCAGTCCCGATCGTCATTA
ATCTTTGACTCATGATTTAATCCCGATCATTCTTATAGCTTATCGACTTACGATTTAATCCTAGT
CGCATTTATTTCTTTGACTTACGATTCAATCCCGGTCGTCGTTAATCTTTGACTCATCTT
Found at i:7648406 original size:109 final size:109
Alignment explanation
Indices: 7648258--7648526 Score: 394
Period size: 109 Copynumber: 2.5 Consensus size: 109
7648248 GACTCATCTT
* ** * * *
7648258 GACTTACGGTTTAATCCTAGTCACTTTTATTTCTTTGACTTGTGGTTCAGTCTCGATCGTCATTA
1 GACTTACGGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTACGATTCAGTCTCAATCATCATTA
*
7648323 ATCTTTGACTCATGGTTTAATCCCGATCATTCTTATAGCTTATC
66 ATCTTTGACCCATGGTTTAATCCCGATCATTCTTATAGCTTATC
* * *
7648367 GACTTACGGTTTAATCCTAGTCGTTTTTATTTCTTTGACTTACGATTCAGTCTCAATTATCTTTA
1 GACTTACGGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTACGATTCAGTCTCAATCATCATTA
* ** *
7648432 ATCTTTGACCCGTGGTTTAATCTTGATCATTCTTATAGCTTCTC
66 ATCTTTGACCCATGGTTTAATCCCGATCATTCTTATAGCTTATC
* *
7648476 GACTTACAGTTTAATCCTAGTCGCTTTTATTTCTTTAACTTACGATTCAGT
1 GACTTACGGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTACGATTCAGT
7648527 TTTTAACTCG
Statistics
Matches: 143, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
109 143 1.00
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.45
Consensus pattern (109 bp):
GACTTACGGTTTAATCCTAGTCGCTTTTATTTCTTTGACTTACGATTCAGTCTCAATCATCATTA
ATCTTTGACCCATGGTTTAATCCCGATCATTCTTATAGCTTATC
Found at i:7648507 original size:299 final size:299
Alignment explanation
Indices: 7647959--7648671 Score: 840
Period size: 299 Copynumber: 2.3 Consensus size: 299
7647949 ATAGCTTCTC
* ** * *
7647959 GACTTATGGTTTAATCCTAGTTGCTTTTATTTCTTTGACTTACGGTTCAATCTCAGTTATCTTTA
1 GACTTACGGTTTAATCCTAGTCACTTTTATTTCTTTGACTTACGGTTCAATCTCAGTCATCATTA
*
7648024 ATCTTTGACTCATGGTTTAATCCCGATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGT
66 ATCTTTGACTCATGGTTTAATCCCGATCATTCTTATAGCTTATCGACTTACAGTTTAATCCTAGT
* * ** * **
7648089 CGCTTTTATTTCTTTGACTTATGGTTCAGTCCCGGTCGTCATTAATCTTTGACTTGTGATTTAAT
131 CGCTTTTATTTCTTTGACTTACGATTCAGTCCCAATCATCATTAATCTTTGACCCGTGATTTAAT
* * * *
7648154 CTCGATCATTCTTATAGCTTTTTGACTTACGATTTAATCCTAGTCGCATTTATTTCTTTGACTTG
196 CTCGATCATTCTTATAGCTTCTCGACTTACGATTTAATCCTAGTCGCATTTATTTCTTTAACTTA
7648219 CGATTCAATCCCGGTCGTCGTTAATCTTTGACTCATCTT
261 CGATTCAATCCCGGTCGTCGTTAATCTTTGACTCATCTT
** * *
7648258 GACTTACGGTTTAATCCTAGTCACTTTTATTTCTTTGACTTGTGGTTCAGTCTC-GATCGTCATT
1 GACTTACGGTTTAATCCTAGTCACTTTTATTTCTTTGACTTACGGTTCAATCTCAG-TCATCATT
*
7648322 AATCTTTGACTCATGGTTTAATCCCGATCATTCTTATAGCTTATCGACTTACGGTTTAATCCTAG
65 AATCTTTGACTCATGGTTTAATCCCGATCATTCTTATAGCTTATCGACTTACAGTTTAATCCTAG
* * * * *
7648387 TCGTTTTTATTTCTTTGACTTACGATTCAGTCTCAATTATCTTTAATCTTTGACCCGTGGTTTAA
130 TCGCTTTTATTTCTTTGACTTACGATTCAGTCCCAATCATCATTAATCTTTGACCCGTGATTTAA
* *
7648452 TCTTGATCATTCTTATAGCTTCTCGACTTAC-AGTTTAATCCTAGTCGCTTTTATTTCTTTAACT
195 TCTCGATCATTCTTATAGCTTCTCGACTTACGA-TTTAATCCTAGTCGCATTTATTTCTTTAACT
* ***** *
7648516 TACGATTCAGTTTTTAACTCGT-GATTTAATCTCGATT-ATTCTTATAGCTTTT
259 TACGATTCA--ATCCCGGTCGTCG--TTAATCT---TTGA--CTCAT--C--TT
* * * * * * *
7648568 CGACTTACAGTTTAATCCTAGTCACTTTTATTTCTCTGACTTATGATTCAATCCCAGTTATCTTT
1 -GACTTACGGTTTAATCCTAGTCACTTTTATTTCTTTGACTTACGGTTCAATCTCAGTCATCATT
** *
7648633 AATCTTTGACTCATGGTTTAATCCTAATCATTTTTATAG
65 AATCTTTGACTCATGGTTTAATCCCGATCATTCTTATAG
7648672 TTTTGAATTA
Statistics
Matches: 349, Mismatches: 48, Indels: 22
0.83 0.11 0.05
Matches are distributed among these distances:
298 2 0.01
299 234 0.67
300 1 0.00
301 5 0.01
302 7 0.02
304 1 0.00
305 2 0.01
306 4 0.01
308 1 0.00
310 2 0.01
311 89 0.26
312 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.46
Consensus pattern (299 bp):
GACTTACGGTTTAATCCTAGTCACTTTTATTTCTTTGACTTACGGTTCAATCTCAGTCATCATTA
ATCTTTGACTCATGGTTTAATCCCGATCATTCTTATAGCTTATCGACTTACAGTTTAATCCTAGT
CGCTTTTATTTCTTTGACTTACGATTCAGTCCCAATCATCATTAATCTTTGACCCGTGATTTAAT
CTCGATCATTCTTATAGCTTCTCGACTTACGATTTAATCCTAGTCGCATTTATTTCTTTAACTTA
CGATTCAATCCCGGTCGTCGTTAATCTTTGACTCATCTT
Found at i:7648610 original size:93 final size:93
Alignment explanation
Indices: 7648442--7648617 Score: 280
Period size: 93 Copynumber: 1.9 Consensus size: 93
7648432 ATCTTTGACC
* * *
7648442 CGTGGTTTAATCTTGATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCGCTTTTATT
1 CGTGATTTAATCTCGATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCACTTTTATT
*
7648507 TCTTTAACTTACGATTCAGTTTTTAACT
66 TCTCTAACTTACGATTCAGTTTTTAACT
* *
7648535 CGTGATTTAATCTCGATTATTCTTATAGCTTTTCGACTTACAGTTTAATCCTAGTCACTTTTATT
1 CGTGATTTAATCTCGATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCACTTTTATT
* *
7648600 TCTCTGACTTATGATTCA
66 TCTCTAACTTACGATTCA
7648618 ATCCCAGTTA
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.19, G:0.11, T:0.47
Consensus pattern (93 bp):
CGTGATTTAATCTCGATCATTCTTATAGCTTCTCGACTTACAGTTTAATCCTAGTCACTTTTATT
TCTCTAACTTACGATTCAGTTTTTAACT
Found at i:7649283 original size:136 final size:136
Alignment explanation
Indices: 7649060--7649320 Score: 357
Period size: 136 Copynumber: 1.9 Consensus size: 136
7649050 AATCTCTTTA
* *
7649060 TATTCTGACTCGCAGTTCAATCCCAATCTCTTTAAATCAAAATTCACAGTTTAATCTCGATTGTT
1 TATTCTGACTCACAGTTCAATCCCAATCTCTTTAAATCAAAATTCACAATTTAATCTCGATTGTT
*
7649125 GTTATTTTCTGACTCATAGTTTAATCATGGTCGCTTT-TATTTTCTAACTTGTGATTCAATCCAA
66 GTTATTTTCTAACTCATAGTTTAATCATGGTCGCTTTATA-TTT-TAACTTGTGATTCAATCCAA
7649189 CTTGATGT
129 CTTGATGT
* * * * *
7649197 TATTCTGACTCACGGTTCAATCTCGATTTCTTT-AATCCAAAA-TCATAATTTAATCTCGATTGT
1 TATTCTGACTCACAGTTCAATCCCAATCTCTTTAAAT-CAAAATTCACAATTTAATCTCGATTGT
* * * * *
7649260 TGTTTTTTTCTAACTCGTAGTTTAATCCTGGTCTCTTTATATTTTGACTTGTGATTCAATC
65 TGTTATTTTCTAACTCATAGTTTAATCATGGTCGCTTTATATTTTAACTTGTGATTCAATC
7649321 TAAGTTCAAT
Statistics
Matches: 109, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
135 16 0.15
136 58 0.53
137 35 0.32
ACGTcount: A:0.25, C:0.19, G:0.11, T:0.45
Consensus pattern (136 bp):
TATTCTGACTCACAGTTCAATCCCAATCTCTTTAAATCAAAATTCACAATTTAATCTCGATTGTT
GTTATTTTCTAACTCATAGTTTAATCATGGTCGCTTTATATTTTAACTTGTGATTCAATCCAACT
TGATGT
Found at i:7649737 original size:90 final size:93
Alignment explanation
Indices: 7649573--7649761 Score: 276
Period size: 98 Copynumber: 2.0 Consensus size: 93
7649563 CTTGATTCTC
***
7649573 AGTAATGTGCAAAAAGGGGCAACTGTAGACATCGATTTTGTTTGGTATATTTTTTTATATATATA
1 AGTAATGTGCAAAAAGGGGCAACTGTAGACATCGATTTTGTCCAGTATA----TTTATATATATA
7649638 TAGAACAATAATGATTTTAATAATAATAATAAA
62 TA-AACAATAATGATTTTAATAATAATAATAAA
*
7649671 AGTAATGTGCAAAGAGGGGCAACTGTAGACATCGATTTTGTCCAGTATA-TT-TATATATAT-AA
1 AGTAATGTGCAAAAAGGGGCAACTGTAGACATCGATTTTGTCCAGTATATTTATATATATATAAA
7649733 CAATAATGATTTTAATAATAATAATAAA
66 CAATAATGATTTTAATAATAATAATAAA
7649761 A
1 A
7649762 TTGGTTTAAT
Statistics
Matches: 87, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
90 31 0.36
92 9 0.10
93 2 0.02
98 45 0.52
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.35
Consensus pattern (93 bp):
AGTAATGTGCAAAAAGGGGCAACTGTAGACATCGATTTTGTCCAGTATATTTATATATATATAAA
CAATAATGATTTTAATAATAATAATAAA
Found at i:7649899 original size:29 final size:29
Alignment explanation
Indices: 7649866--7649926 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
7649856 GCACCATTGC
* *
7649866 CACCAGGCCCTACACCT-CACCCTTCTGAT
1 CACCAGACCCTAC-CCTCCACCCCTCTGAT
*
7649895 CACCATACCCTACCCTCCACCCCTCTGAT
1 CACCAGACCCTACCCTCCACCCCTCTGAT
7649924 CAC
1 CAC
7649927 TCATCTCGCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 3 0.11
29 25 0.89
ACGTcount: A:0.21, C:0.52, G:0.07, T:0.20
Consensus pattern (29 bp):
CACCAGACCCTACCCTCCACCCCTCTGAT
Found at i:7651934 original size:26 final size:26
Alignment explanation
Indices: 7651905--7651990 Score: 109
Period size: 26 Copynumber: 3.2 Consensus size: 26
7651895 TTTTTCTTGG
*
7651905 TATTTTGTATTATTTTTTGTATTTCA
1 TATTTTGTATTATTTTTTGTATTTTA
* *
7651931 TATTTTGTATTACTTTTTGTATTTTG
1 TATTTTGTATTATTTTTTGTATTTTA
* *
7651957 TATTTTGTATTTTATATTTTATATTTTA
1 TATTTTGTA--TTATTTTTTGTATTTTA
7651985 TATTTT
1 TATTTT
7651991 TTTTAATTTC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
26 32 0.63
28 19 0.37
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.71
Consensus pattern (26 bp):
TATTTTGTATTATTTTTTGTATTTTA
Found at i:7651938 original size:14 final size:14
Alignment explanation
Indices: 7651905--7652013 Score: 91
Period size: 14 Copynumber: 7.9 Consensus size: 14
7651895 TTTTTCTTGG
7651905 TATTTTGTA-TT-A
1 TATTTTGTATTTCA
*
7651917 TTTTTTGTATTTCA
1 TATTTTGTATTTCA
*
7651931 TATTTTGTATTAC-
1 TATTTTGTATTTCA
**
7651944 T-TTTTGTATTTTG
1 TATTTTGTATTTCA
*
7651957 TATTTTGTATTTTA
1 TATTTTGTATTTCA
* *
7651971 TATTTTATATTTTA
1 TATTTTGTATTTCA
*
7651985 TATTTTTTTTAATTTCA
1 TA--TTTTGT-ATTTCA
7652002 TATTTTGTATTT
1 TATTTTGTATTT
7652014 TTTTTGGACA
Statistics
Matches: 80, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
12 17 0.21
13 4 0.05
14 42 0.52
15 5 0.06
16 5 0.06
17 7 0.09
ACGTcount: A:0.20, C:0.03, G:0.06, T:0.71
Consensus pattern (14 bp):
TATTTTGTATTTCA
Found at i:7651941 original size:7 final size:7
Alignment explanation
Indices: 7651904--7651990 Score: 74
Period size: 7 Copynumber: 13.0 Consensus size: 7
7651894 TTTTTTCTTG
7651904 GTATTTT
1 GTATTTT
*
7651911 GTATTAT
1 GTATTTT
7651918 -T-TTTT
1 GTATTTT
*
7651923 GTATTTC
1 GTATTTT
*
7651930 ATATTTT
1 GTATTTT
*
7651937 GTA-TTA
1 GTATTTT
*
7651943 CT-TTTT
1 GTATTTT
7651949 GTATTTT
1 GTATTTT
7651956 GTATTTT
1 GTATTTT
7651963 GTATTTT
1 GTATTTT
*
7651970 ATATTTT
1 GTATTTT
*
7651977 ATATTTT
1 GTATTTT
*
7651984 ATATTTT
1 GTATTTT
7651991 TTTTAATTTC
Statistics
Matches: 65, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
5 3 0.05
6 8 0.12
7 54 0.83
ACGTcount: A:0.20, C:0.02, G:0.08, T:0.70
Consensus pattern (7 bp):
GTATTTT
Found at i:7651993 original size:45 final size:45
Alignment explanation
Indices: 7651891--7652014 Score: 121
Period size: 45 Copynumber: 2.7 Consensus size: 45
7651881 TTTTTTTTTG
* *
7651891 TTAT-TTTTTCTTGGTATTTTGTATTAT-T-TTTTGTATTTCATATT
1 TTATATTTTT-TT-GTATTTTGTATTTTGTATTTTATATTTCATATT
* *
7651935 TTGTATTACTTTTTGTATTTTGTATTTTGTATTTTATATTTTATATT
1 TTATATT--TTTTTGTATTTTGTATTTTGTATTTTATATTTCATATT
**
7651982 TTATATTTTTTT-TAATTTCATATTTTGTATTTT
1 TTATATTTTTTTGT-ATTTTGTATTTTGTATTTT
7652015 TTTTGGACAA
Statistics
Matches: 67, Mismatches: 7, Indels: 11
0.79 0.08 0.13
Matches are distributed among these distances:
44 4 0.06
45 37 0.55
46 3 0.04
47 23 0.34
ACGTcount: A:0.19, C:0.03, G:0.07, T:0.71
Consensus pattern (45 bp):
TTATATTTTTTTGTATTTTGTATTTTGTATTTTATATTTCATATT
Found at i:7651999 original size:17 final size:18
Alignment explanation
Indices: 7651973--7652007 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7651963 GTATTTTATA
*
7651973 TTTTATATTTTATATTTT
1 TTTTATATTTCATATTTT
7651991 TTTTA-ATTTCATATTTT
1 TTTTATATTTCATATTTT
7652008 GTATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTATATTTCATATTTT
Found at i:7651999 original size:24 final size:25
Alignment explanation
Indices: 7651966--7652018 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 25
7651956 GTATTTTGTA
*
7651966 TTTTATATTTTATATTTTATATTTT
1 TTTTATATTTCATATTTTATATTTT
*
7651991 TTTTA-ATTTCATATTTTGTATTTT
1 TTTTATATTTCATATTTTATATTTT
7652015 TTTT
1 TTTT
7652019 GGACAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 21 0.81
25 5 0.19
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (25 bp):
TTTTATATTTCATATTTTATATTTT
Found at i:7652006 original size:7 final size:7
Alignment explanation
Indices: 7651945--7652014 Score: 67
Period size: 7 Copynumber: 10.6 Consensus size: 7
7651935 TTGTATTACT
*
7651945 TTTTGTA
1 TTTTATA
*
7651952 TTTTGTA
1 TTTTATA
*
7651959 TTTTGTA
1 TTTTATA
7651966 TTTTATA
1 TTTTATA
7651973 TTTTATA
1 TTTTATA
7651980 TTTTATA
1 TTTTATA
7651987 -TTT-T-
1 TTTTATA
7651991 TTTTA-A
1 TTTTATA
*
7651997 TTTCATA
1 TTTTATA
*
7652004 TTTTGTA
1 TTTTATA
7652011 TTTT
1 TTTT
7652015 TTTTGGACAA
Statistics
Matches: 55, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
5 4 0.07
6 7 0.13
7 44 0.80
ACGTcount: A:0.20, C:0.01, G:0.06, T:0.73
Consensus pattern (7 bp):
TTTTATA
Found at i:7652577 original size:105 final size:105
Alignment explanation
Indices: 7652468--7652895 Score: 598
Period size: 105 Copynumber: 4.1 Consensus size: 105
7652458 AATAAATCAA
* *
7652468 GAGTCAGAGGTTAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGGGATTG
1 GAGTCAGAAGATAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGGGATTG
*
7652533 AACCGCGAATTAGAGAATAAAAAGATCAGGATTAAACCAC
66 AACCGCGAATCAGAGAATAAAAAGATCAGGATTAAACCAC
***
7652573 GAGTCAGAAGATAACAACAACAATCGAGATTAAACTGTAATTTTAAATTAAAGAGATCGGGATTG
1 GAGTCAGAAGATAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGGGATTG
* * *
7652638 AACAGCGAATC-GAAGAATAAAAAGATCGGGATTAAACCAT
66 AACCGCGAATCAG-AGAATAAAAAGATCAGGATTAAACCAC
* * *
7652678 GAGTCAAAAAATAACAACAACAATCGAGATTAAACTGCGATTTTAAATTAAAGAGATCGGGATTG
1 GAGTCAGAAGATAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGGGATTG
* * * *
7652743 AATCACGAATCAGAGAATAAAAGGATCAAGATTAAACCAC
66 AACCGCGAATCAGAGAATAAAAAGATCAGGATTAAACCAC
* * * *
7652783 AAGTCA-AA-A-AATAACAACAATCAAGATTAAACTACGATTTTAAATTAAAGAGATTGGGATTG
1 GAGTCAGAAGATAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGGGATTG
* *
7652845 AACCGCGAATCAAATAATAAAAAGATC-GAGATTAAACCAC
66 AACCGCGAATCAGAGAATAAAAAGATCAG-GATTAAACCAC
7652885 GAGTCA-AAGAT
1 GAGTCAGAAGAT
7652896 TAAAGATAAC
Statistics
Matches: 286, Mismatches: 32, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
102 89 0.31
103 2 0.01
104 3 0.01
105 191 0.67
106 1 0.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.21
Consensus pattern (105 bp):
GAGTCAGAAGATAACAACAACAATCGAGATTAAACTACGATTTTAAATTAAAGAGATCGGGATTG
AACCGCGAATCAGAGAATAAAAAGATCAGGATTAAACCAC
Found at i:7652892 original size:34 final size:34
Alignment explanation
Indices: 7652653--7652892 Score: 112
Period size: 34 Copynumber: 7.0 Consensus size: 34
7652643 CGAATCGAAG
* * *
7652653 AATAAAAAGATCGGGATTAAACCATGAGTCAAAA
1 AATAAAAAGATCGAGATTAAACCACGAGTCAAAT
* ** * *
7652687 AATAACAACAACAATCGAGATTAAACTGCGATTTTAAAT
1 AAT-A-AA-AA-GATCGAGATTAAACCACGA-GTCAAAT
* * * * * * *
7652726 --TAAAGAGATCGGGATTGAATCACGAATCAGAG
1 AATAAAAAGATCGAGATTAAACCACGAGTCAAAT
* * * *
7652758 AATAAAAGGATCAAGATTAAACCACAAGTCAAAA
1 AATAAAAAGATCGAGATTAAACCACGAGTCAAAT
* * * *
7652792 AATAACAACA-ATCAAGATTAAACTACGATTTTAAAT
1 AATAA-AA-AGATCGAGATTAAACCACGA-GTCAAAT
* * * * * *
7652828 --TAAAGAGATTGGGATTGAACCGCGAATCAAAT
1 AATAAAAAGATCGAGATTAAACCACGAGTCAAAT
7652860 AATAAAAAGATCGAGATTAAACCACGAGTCAAA
1 AATAAAAAGATCGAGATTAAACCACGAGTCAAA
7652893 GATTAAAGAT
Statistics
Matches: 143, Mismatches: 50, Indels: 26
0.65 0.23 0.12
Matches are distributed among these distances:
32 9 0.06
33 26 0.18
34 59 0.41
35 21 0.15
36 7 0.05
37 3 0.02
38 14 0.10
39 4 0.03
ACGTcount: A:0.50, C:0.14, G:0.16, T:0.20
Consensus pattern (34 bp):
AATAAAAAGATCGAGATTAAACCACGAGTCAAAT
Found at i:7653303 original size:36 final size:36
Alignment explanation
Indices: 7653256--7653439 Score: 142
Period size: 36 Copynumber: 5.1 Consensus size: 36
7653246 GTAAGTCAAG
7653256 AAGCTATAAGAATGATCGAGATTAAACCATGAGTCA
1 AAGCTATAAGAATGATCGAGATTAAACCATGAGTCA
*
7653292 AAGCTATAAGAATGATCGGGATTAAACCATGAGTCA
1 AAGCTATAAGAATGATCGAGATTAAACCATGAGTCA
* * * ***
7653328 AAGAT-TAA-AGAT-AACTGAGATTGAACCGCAAGTCA
1 AAGCTATAAGA-ATGATC-GAGATTAAACCATGAGTCA
** * * * * *
7653363 AAGAAATAAAAATGA-CTAGGATTAAATCGTAAGTCAA
1 AAGCTATAAGAATGATCGA-GATTAAACCATGAGTC-A
* * *
7653400 GAAGCTATAAGAATGATCGGGATTAAACCACGAGTTA
1 -AAGCTATAAGAATGATCGAGATTAAACCATGAGTCA
7653437 AAG
1 AAG
7653440 ATTAACGATG
Statistics
Matches: 116, Mismatches: 23, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
34 3 0.03
35 24 0.21
36 61 0.53
37 4 0.03
38 23 0.20
39 1 0.01
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (36 bp):
AAGCTATAAGAATGATCGAGATTAAACCATGAGTCA
Found at i:7653335 original size:19 final size:19
Alignment explanation
Indices: 7653274--7653336 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
7653264 AGAATGATCG
7653274 AGATTAAACCATGAGTCAA
1 AGATTAAACCATGAGTCAA
* *
7653293 AGCTATAAGA--ATGA-TC-G
1 AGAT-TAA-ACCATGAGTCAA
*
7653310 GGATTAAACCATGAGTCAA
1 AGATTAAACCATGAGTCAA
7653329 AGATTAAA
1 AGATTAAA
7653337 GATAACTGAG
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
15 1 0.03
16 3 0.09
17 6 0.19
18 4 0.12
19 14 0.44
20 3 0.09
21 1 0.03
ACGTcount: A:0.46, C:0.13, G:0.19, T:0.22
Consensus pattern (19 bp):
AGATTAAACCATGAGTCAA
Found at i:7653336 original size:145 final size:145
Alignment explanation
Indices: 7652839--7653473 Score: 512
Period size: 145 Copynumber: 4.4 Consensus size: 145
7652829 AAAGAGATTG
* * * * * * *
7652839 GGATTGAACCGCGAATCAAATAATAAAAA-GATCGAGATTAAACCACGAGTCAAAGATTAAAGAT
1 GGATTAAACCACGAGTCAAAGATTAAAAATGATCGGGATTAAACCACAAGTCAAAGATTAAAGAT
* * **
7652903 AACTAGGACTGAACAGTAAGTCAAAGAAATAAAAAC-AGCTAGGATTAAACCGTAAGTTGAGAAG
66 AACTAGGACTGAACCGCAAGTCAAAGAAATAAAAACGA-CTAGGATTAAACCGTAAGTCAAGAAG
7652967 CTATAAGAATGATC-A
130 CTATAAGAATGATCGA
* * * * *
7652982 GGATTAAACCACGAGTCAAAGATTAAAAAT-AACTGAGACTGAACCACAAGTCAAAGAAATAGAA
1 GGATTAAACCACGAGTCAAAGATTAAAAATGATC-GGGATTAAACCACAAGTCAAAG-ATTA-AA
* * * * * * * * * *
7653046 -ATGACTAGGATTAAACCGTAAGTCGAGAA-ACTATAAAAATGA-TCGGGATCAAACCATGAGTC
63 GATAACTAGGACTGAACCGCAAGTC-A-AAGA-AATAAAAACGACT-AGGATTAAACCGTAAGTC
* * *
7653108 -A-AAGAT-TAA-AGAT-AACTA
124 AAGAAGCTATAAGA-ATGATCGA
* * *** * * **
7653126 TGACTAAACCGTAAGTCAAAGAAATAAAAAATGA-CTAGGATTAAACCGTAAGTCGAGAAGATTA
1 GGATTAAACCACGAGTCAAAG--ATTAAAAATGATC-GGGATTAAACCACAAGTC-A-AAGATTA
* * *
7653190 AAGATAACTGGGACTGAACTGCAAGTCAAAGAAATAAAAACGACTAGGATTAAACTGTAAGTCAA
61 AAGATAACTAGGACTGAACCGCAAGTCAAAGAAATAAAAACGACTAGGATTAAACCGTAAGTCAA
7653255 GAAGCTATAAGAATGATCGA
126 GAAGCTATAAGAATGATCGA
* * * **
7653275 -GATTAAACCATGAGTCAAAGCTATAAGAATGATCGGGATTAAACCATGAGTCAAAGATTAAAGA
1 GGATTAAACCACGAGTCAAAGAT-TAAAAATGATCGGGATTAAACCACAAGTCAAAGATTAAAGA
* * *
7653339 TAACT-GAGATTGAACCGCAAGTCAAAGAAATAAAAATGACTAGGATTAAATCGTAAGTCAAGAA
65 TAACTAG-GACTGAACCGCAAGTCAAAGAAATAAAAACGACTAGGATTAAACCGTAAGTCAAGAA
7653403 GCTATAAGAATGATCG-
129 GCTATAAGAATGATCGA
* ** * *
7653419 GGATTAAACCACGAGTTAAAGATTAACGATGATCGGGACTGAA-CAGCAAGTCAAA
1 GGATTAAACCACGAGTCAAAGATTAAAAATGATCGGGATTAAACCA-CAAGTCAAA
7653474 AAAATAAAAA
Statistics
Matches: 388, Mismatches: 75, Indels: 57
0.75 0.14 0.11
Matches are distributed among these distances:
143 31 0.08
144 65 0.17
145 154 0.40
146 36 0.09
147 71 0.18
148 27 0.07
149 4 0.01
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.20
Consensus pattern (145 bp):
GGATTAAACCACGAGTCAAAGATTAAAAATGATCGGGATTAAACCACAAGTCAAAGATTAAAGAT
AACTAGGACTGAACCGCAAGTCAAAGAAATAAAAACGACTAGGATTAAACCGTAAGTCAAGAAGC
TATAAGAATGATCGA
Found at i:7653483 original size:109 final size:109
Alignment explanation
Indices: 7652868--7653484 Score: 637
Period size: 109 Copynumber: 5.7 Consensus size: 109
7652858 ATAATAAAAA
* *
7652868 GATCGAGATTAAACCACGAGTCAAAGATTAAAGATAACTAGGACTGAACAGTAAGTCAAAGAAAT
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATAACTAGGACTGAACAGCAAGTCAAAGAAAT
* *
7652933 AAAAA-CAGCTAGGATTAAACCGTAAGTTGAGAAGCTATAAGAAT
66 AAAAATGA-CTAGGATTAAACCGTAAGTCGAGAAGCTATAAGAAT
* *
7652977 GATCAGGATTAAACCACGAGTCAAAGATTAAAAATAACT-GAGACTGAACCA-CAAGTCAAAGAA
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATAACTAG-GACTGAA-CAGCAAGTCAAAGAA
* * *
7653040 ATAGAAATGACTAGGATTAAACCGTAAGTCGAGAAACTATAAAAAT
64 ATAAAAATGACTAGGATTAAACCGTAAGTCGAGAAGCTATAAGAAT
* * * * * *
7653086 GATCGGGATCAAACCATGAGTCAAAGATTAAAGATAACTATGACTAAACCGTAAGTCAAAGAAAT
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATAACTAGGACTGAACAGCAAGTCAAAGAAAT
*
7653151 AAAAAATGACTAGGATTAAACCGTAAGTCGAGAAGAT-TAA-AGAT
66 -AAAAATGACTAGGATTAAACCGTAAGTCGAGAAGCTATAAGA-AT
* * * ** * * * ** * * * *
7653195 -AACTGGGACTGAACTGCAAGTCAAAGAAATAAAAACGACTAGGATTAAACTGTAAGTC-AAGAA
1 GATC-GGGATTAAACCACGAGTCAAAG-ATTAAAGATAACTAGGACTGAACAGCAAGTCAAAGAA
* * * *
7653258 GCTATAAGAATGA-TCGAGATTAAACCATGAGTC-A-AAGCTATAAGAAT
64 ---ATAAAAATGACTAG-GATTAAACCGTAAGTCGAGAAGCTATAAGAAT
* * *
7653305 GATCGGGATTAAACCATGAGTCAAAGATTAAAGATAACT-GAGATTGAACCGCAAGTCAAAGAAA
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATAACTAG-GACTGAACAGCAAGTCAAAGAAA
* *
7653369 TAAAAATGACTAGGATTAAATCGTAAGTCAAGAAGCTATAAGAAT
65 TAAAAATGACTAGGATTAAACCGTAAGTCGAGAAGCTATAAGAAT
* * * * *
7653414 GATCGGGATTAAACCACGAGTTAAAGATTAACGATGA-TCGGGACTGAACAGCAAGTCAAAAAAA
1 GATCGGGATTAAACCACGAGTCAAAGATTAAAGATAACT-AGGACTGAACAGCAAGTCAAAGAAA
7653478 TAAAAAT
65 TAAAAAT
7653485 AACCATAACT
Statistics
Matches: 419, Mismatches: 66, Indels: 46
0.79 0.12 0.09
Matches are distributed among these distances:
107 22 0.05
108 10 0.02
109 271 0.65
110 90 0.21
111 24 0.06
112 2 0.00
ACGTcount: A:0.47, C:0.13, G:0.20, T:0.20
Consensus pattern (109 bp):
GATCGGGATTAAACCACGAGTCAAAGATTAAAGATAACTAGGACTGAACAGCAAGTCAAAGAAAT
AAAAATGACTAGGATTAAACCGTAAGTCGAGAAGCTATAAGAAT
Found at i:7667322 original size:24 final size:24
Alignment explanation
Indices: 7667258--7667348 Score: 103
Period size: 24 Copynumber: 3.7 Consensus size: 24
7667248 TCTTTTTTTG
*
7667258 TATTTTTTATTATTATTT-TATTTCA
1 TATTTTGTATT-TT-TTTGTATTTCA
7667283 TATTTTGTATTATTTTTTGTATTTCA
1 TATTTTGTA-T-TTTTTTGTATTTCA
* * *
7667309 TATTTTTTATTTTTTTGTACTTCG
1 TATTTTGTATTTTTTTGTATTTCA
7667333 TATTTTGTATTTTTTT
1 TATTTTGTATTTTTTT
7667349 TGGACAAATT
Statistics
Matches: 58, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
24 27 0.47
25 12 0.21
26 18 0.31
27 1 0.02
ACGTcount: A:0.18, C:0.04, G:0.05, T:0.73
Consensus pattern (24 bp):
TATTTTGTATTTTTTTGTATTTCA
Found at i:7667346 original size:25 final size:26
Alignment explanation
Indices: 7667258--7667350 Score: 113
Period size: 25 Copynumber: 3.7 Consensus size: 26
7667248 TCTTTTTTTG
* *
7667258 TATTTTTTATTATTATTT-TATTTCA
1 TATTTTGTATTATTTTTTGTATTTCA
7667283 TATTTTGTATTATTTTTTGTATTTCA
1 TATTTTGTATTATTTTTTGTATTTCA
* * *
7667309 TATTTTTTA-T-TTTTTTGTACTTCG
1 TATTTTGTATTATTTTTTGTATTTCA
7667333 TATTTTGTATT-TTTTTTG
1 TATTTTGTATTATTTTTTG
7667351 GACAAATTTG
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
24 20 0.33
25 25 0.42
26 15 0.25
ACGTcount: A:0.17, C:0.04, G:0.06, T:0.72
Consensus pattern (26 bp):
TATTTTGTATTATTTTTTGTATTTCA
Found at i:7669085 original size:22 final size:22
Alignment explanation
Indices: 7669058--7669101 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7669048 TATAATTTTT
*
7669058 ATTATAACTAAATAA-TTATAAA
1 ATTATAA-TAAAAAATTTATAAA
7669080 ATTATAATAAAAAATTTATAAA
1 ATTATAATAAAAAATTTATAAA
7669102 TAAAATGCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
ATTATAATAAAAAATTTATAAA
Found at i:7671312 original size:15 final size:15
Alignment explanation
Indices: 7671294--7671322 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7671284 TTTAAAAATT
7671294 TTATTGATTTTTTTA
1 TTATTGATTTTTTTA
7671309 TTATTGATTTTTTT
1 TTATTGATTTTTTT
7671323 GAAGAAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.76
Consensus pattern (15 bp):
TTATTGATTTTTTTA
Found at i:7671997 original size:12 final size:11
Alignment explanation
Indices: 7671974--7672003 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
7671964 AATAATACAT
*
7671974 AAAATATTAAA
1 AAAATTTTAAA
7671985 AAAATTTTAAA
1 AAAATTTTAAA
7671996 AAAATTTT
1 AAAATTTT
7672004 CTTTTACTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
AAAATTTTAAA
Found at i:7672869 original size:14 final size:14
Alignment explanation
Indices: 7672833--7672889 Score: 52
Period size: 14 Copynumber: 4.3 Consensus size: 14
7672823 TAATATTATT
7672833 AAATACAATAATAA
1 AAATACAATAATAA
*
7672847 AAAT--TA-AATAA
1 AAATACAATAATAA
7672858 AAATATCAA-AATACA
1 AAATA-CAATAATA-A
7672873 AAATACAATAA-AA
1 AAATACAATAATAA
7672886 AAAT
1 AAAT
7672890 GAAGACCTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 11
0.73 0.04 0.22
Matches are distributed among these distances:
11 9 0.25
12 1 0.03
13 5 0.14
14 13 0.36
15 8 0.22
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATACAATAATAA
Found at i:7672882 original size:26 final size:25
Alignment explanation
Indices: 7672833--7672886 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 25
7672823 TAATATTATT
7672833 AAATACAATAATAAAAATTAAATAA
1 AAATACAATAATAAAAATTAAATAA
7672858 AAATATCAA-AATACAAAA-TACAATAA
1 AAATA-CAATAATA-AAAATTA-AATAA
7672884 AAA
1 AAA
7672887 AATGAAGACC
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.20
Consensus pattern (25 bp):
AAATACAATAATAAAAATTAAATAA
Found at i:7673916 original size:21 final size:20
Alignment explanation
Indices: 7673874--7673917 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
7673864 TTAAAGATTT
* **
7673874 TTTTAATATTATTTTTGTTA
1 TTTTAATATTATTCTTAATA
7673894 TTTTAATTATTATTCTTAATA
1 TTTTAA-TATTATTCTTAATA
7673915 TTT
1 TTT
7673918 ATGCATGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTAATATTATTCTTAATA
Found at i:7686692 original size:149 final size:149
Alignment explanation
Indices: 7686325--7686816 Score: 616
Period size: 149 Copynumber: 3.3 Consensus size: 149
7686315 AAGAACCGAG
* * * * *
7686325 TGAG-ATTTTTAAAGTCGTTAAGCCTTTACTGAGACGAGTTTTTTTCAAGATGAGAATTTTTAAA
1 TGAGAATTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAG-CTTTTTC-AGATGAG-ATTTTTAAA
* * * * *
7686389 GTTGTTGAGTCTCTATTAAGAGGAGCCCTTTTCAAGATGAA-ATTTTTAAAATTATTGAGCCTCT
63 GTTGTTGAGTCTCTACTGAGAGGAGCCCTTTTCAAGAT-AAGATTTTTAAAGTTGTTGAGCCTTT
* * * *
7686453 GTTAAGAGGAGCCCTTTTCAAGA
127 GCTGAGAGAAGCCTTTTTCAAGA
* * *
7686476 TGA-AATTTTTAAAATTGTTGAGCCTCTGCTGAGAGAAGCTTTTTCAGATGAGATTTTTAAAGTT
1 TGAGAATTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTTCAGATGAGATTTTTAAAGTT
* * * * * *
7686540 GTTGAGTCTTTGCTGAGAGGAGCCCTTTTCAAGATAAGATTTTTAAAGTCGTTAAACCTTTACTG
66 GTTGAGTCTCTACTGAGAGGAGCCCTTTTCAAGATAAGATTTTTAAAGTTGTTGAGCCTTTGCTG
7686605 AGAGAAGCCTTTTTCAAGA
131 AGAGAAGCCTTTTTCAAGA
7686624 TGAGAATTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTTCAGATGAGATTTTTAAAGTT
1 TGAGAATTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTTCAGATGAGATTTTTAAAGTT
* * * *
7686689 GTTGAGCCTCTACTGAGATGAGCCCTTTCCAAGATGAGATTTTTAAAGTTGTTGAGCCTTTGCTG
66 GTTGAGTCTCTACTGAGAGGAGCCCTTTTCAAGATAAGATTTTTAAAGTTGTTGAGCCTTTGCTG
7686754 AGA-AGAGCCTTTTTCAAGA
131 AGAGA-AGCCTTTTTCAAGA
* * * * *
7686773 T-AAAACTTTTAAAGTTGTTGAGCCTCTGCTAAGAGGAACTTTTT
1 TGAGAATTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTT
7686817 TTCAGATTTT
Statistics
Matches: 296, Mismatches: 41, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
147 2 0.01
148 120 0.41
149 138 0.47
150 6 0.02
151 30 0.10
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.37
Consensus pattern (149 bp):
TGAGAATTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGCTTTTTCAGATGAGATTTTTAAAGTT
GTTGAGTCTCTACTGAGAGGAGCCCTTTTCAAGATAAGATTTTTAAAGTTGTTGAGCCTTTGCTG
AGAGAAGCCTTTTTCAAGA
Found at i:7686726 original size:199 final size:198
Alignment explanation
Indices: 7686325--7686807 Score: 576
Period size: 199 Copynumber: 2.4 Consensus size: 198
7686315 AAGAACCGAG
* * * * ** *
7686325 TGAGATTTTTAAAGTCGTTAAGCCTTTACTGAGACGAGTTTTTTTCAAGATGAGAATTTTTAAAG
1 TGAGATTTTTAAAGTTGTTGAGCCTTTGCTGAGAAGAGCCTTTTTCAAGATAAG-ATTTTTAAAG
* * ** * * **
7686390 TTGTTGAGTCTCTATTAAGAGGAGCCCTTTTCAAGATGAAATTTTTAAAATTATTGAGCCTCTGT
65 TCGTTAAACCTCTACTAAGAGAAGCCCTTTTCAAGATGAAATTTTTAAAATTATTGAGCCTCTAC
* * *
7686455 TAAGAGGAGCCCTTTTCAAGATGAAATTTTTAAAATTGTTGAGCCTCTGCTGAGAGAAGCTTTTT
130 TAAGAGGAGCCCTTTTCAAGATGAAATTTTTAAAATTGTTGAGCCTCTACTGAGAGAAGCCTTTC
7686520 CAGA
195 CAGA
* * *
7686524 TGAGATTTTTAAAGTTGTTGAGTCTTTGCTGAGAGGAGCCCTTTTCAAGATAAGATTTTTAAAGT
1 TGAGATTTTTAAAGTTGTTGAGCCTTTGCTGAGAAGAGCCTTTTTCAAGATAAGATTTTTAAAGT
* * * * *
7686589 CGTTAAACCTTTACTGAGAGAAGCCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGAGCCTCTAC
66 CGTTAAACCTCTACTAAGAGAAGCCCTTTTCAAGATGA-AATTTTTAAAATTATTGAGCCTCTAC
* * * *
7686654 TGAGAGGAG-CTTTTTC-AGATGAGATTTTTAAAGTTGTTGAGCCTCTACTGAGATG-AGCCCTT
130 TAAGAGGAGCCCTTTTCAAGATGAAATTTTTAAAATTGTTGAGCCTCTACTGAGA-GAAG-CCTT
7686716 TCCAAGA
193 TCC-AGA
* *
7686723 TGAGATTTTTAAAGTTGTTGAGCCTTTGCTGAGAAGAGCCTTTTTCAAGATAAAACTTTTAAAGT
1 TGAGATTTTTAAAGTTGTTGAGCCTTTGCTGAGAAGAGCCTTTTTCAAGATAAGATTTTTAAAGT
* * * *
7686788 TGTTGAGCCTCTGCTAAGAG
66 CGTTAAACCTCTACTAAGAG
7686808 GAACTTTTTT
Statistics
Matches: 240, Mismatches: 40, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
197 36 0.15
198 52 0.22
199 152 0.63
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (198 bp):
TGAGATTTTTAAAGTTGTTGAGCCTTTGCTGAGAAGAGCCTTTTTCAAGATAAGATTTTTAAAGT
CGTTAAACCTCTACTAAGAGAAGCCCTTTTCAAGATGAAATTTTTAAAATTATTGAGCCTCTACT
AAGAGGAGCCCTTTTCAAGATGAAATTTTTAAAATTGTTGAGCCTCTACTGAGAGAAGCCTTTCC
AGA
Found at i:7686817 original size:50 final size:50
Alignment explanation
Indices: 7686329--7686809 Score: 531
Period size: 50 Copynumber: 9.7 Consensus size: 50
7686319 ACCGAGTGAG
* * * * * **
7686329 ATTTTTAAAGTCGTTAAGCCTTTACTGAGACGAGTTTTTTTCAAGATGAGA
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATGA-A
* ** * *
7686380 ATTTTTAAAGTTGTTGAGTCTCTATTAAGAGGAGCCCTTTTCAAGATGAA
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATGAA
* * * * *
7686430 ATTTTTAAAATTATTGAGCCTCTGTTAAGAGGAGCCCTTTTCAAGATGAA
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATGAA
* * *
7686480 ATTTTTAAAATTGTTGAGCCTCTGCTGAGAGAAG-CTTTTTC-AGATGAG
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATGAA
* * *
7686528 ATTTTTAAAGTTGTTGAGTCTTTGCTGAGAGGAGCCCTTTTCAAGAT-AA
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATGAA
* * * * * *
7686577 GATTTTTAAAGTCGTTAAACCTTTACTGAGAGAAGCCTTTTTCAAGATGAGA
1 -ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATGA-A
* *
7686629 ATTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAG-CTTTTTC-AGATGAG
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATGAA
* * * * *
7686677 ATTTTTAAAGTTGTTGAGCCTCTACTGAGATGAGCCCTTTCCAAGATGAG
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATGAA
* * *
7686727 ATTTTTAAAGTTGTTGAGCCTTTGCTGAGAAGAGCCTTTTTCAAGATAAA
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATGAA
* *
7686777 ACTTTTAAAGTTGTTGAGCCTCTGCTAAGAGGA
1 ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGA
7686810 ACTTTTTTTC
Statistics
Matches: 370, Mismatches: 53, Indels: 15
0.84 0.12 0.03
Matches are distributed among these distances:
48 69 0.19
49 24 0.06
50 207 0.56
51 69 0.19
52 1 0.00
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (50 bp):
ATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCCTTTTTCAAGATGAA
Found at i:7687111 original size:13 final size:13
Alignment explanation
Indices: 7687061--7687119 Score: 57
Period size: 13 Copynumber: 4.4 Consensus size: 13
7687051 CAATATTATT
7687061 AAATACAATAATAA
1 AAATACAATAA-AA
*
7687075 AAATTA-AACAAAA
1 AAA-TACAATAAAA
* *
7687088 ATATCAAAATAAAA
1 AAAT-ACAATAAAA
7687102 AAATACAATAAAA
1 AAATACAATAAAA
7687115 AAATA
1 AAATA
7687120 AAAACAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
12 1 0.03
13 18 0.49
14 16 0.43
15 2 0.05
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.19
Consensus pattern (13 bp):
AAATACAATAAAA
Found at i:7687114 original size:27 final size:27
Alignment explanation
Indices: 7687067--7687130 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
7687057 TATTAAATAC
* *
7687067 AATAATAAAAATTAAACAAAAATATCAA
1 AATAA-AAAAATTAAACAAAAAAATAAA
*
7687095 AATAAAAAAA-TACAATAAAAAAATAAA
1 AATAAAAAAATTA-AACAAAAAAATAAA
*
7687122 AACAAAAAA
1 AATAAAAAA
7687131 CATGAAGATA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
26 2 0.06
27 24 0.77
28 5 0.16
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.16
Consensus pattern (27 bp):
AATAAAAAAATTAAACAAAAAAATAAA
Found at i:7687128 original size:14 final size:13
Alignment explanation
Indices: 7687073--7687130 Score: 53
Period size: 14 Copynumber: 4.3 Consensus size: 13
7687063 ATACAATAAT
*
7687073 AAAAATTAAACAA
1 AAAAATAAAACAA
* *
7687086 AAATATCAAAATAA
1 AAAAAT-AAAACAA
* *
7687100 AAAAATACAATAA
1 AAAAATAAAACAA
7687113 AAAAATAAAAACAA
1 AAAAAT-AAAACAA
7687127 AAAA
1 AAAA
7687131 CATGAAGATA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
13 17 0.47
14 19 0.53
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (13 bp):
AAAAATAAAACAA
Found at i:7688508 original size:18 final size:18
Alignment explanation
Indices: 7688466--7688511 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7688456 GTTATAAAAA
*
7688466 AAATAATATATAAGAACT
1 AAATAATAAATAAGAACT
*
7688484 AATTAATAAATTAAGAA-T
1 AAATAATAAA-TAAGAACT
7688502 AAATAATAAA
1 AAATAATAAA
7688512 AAATGAGAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 18 0.75
19 6 0.25
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.28
Consensus pattern (18 bp):
AAATAATAAATAAGAACT
Found at i:7690909 original size:15 final size:15
Alignment explanation
Indices: 7690891--7690920 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7690881 TTTAAAAATT
7690891 TTATTGATTTTTTTA
1 TTATTGATTTTTTTA
7690906 TTATTGATTTTTTTA
1 TTATTGATTTTTTTA
7690921 AAGAAATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (15 bp):
TTATTGATTTTTTTA
Found at i:7691469 original size:5 final size:6
Alignment explanation
Indices: 7691444--7691477 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
7691434 CTTTAAACTA
7691444 TATTTT TCATTTTT TATTTT TATTTT TATTTT TA
1 TATTTT T-A-TTTT TATTTT TATTTT TATTTT TA
7691478 CCCAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 19 0.73
7 2 0.08
8 5 0.19
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:7694447 original size:22 final size:22
Alignment explanation
Indices: 7694420--7694463 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7694410 TATAATTTTT
*
7694420 ATTATAACTAAATAA-TTATAAA
1 ATTATAA-TAAAAAATTTATAAA
7694442 ATTATAATAAAAAATTTATAAA
1 ATTATAATAAAAAATTTATAAA
7694464 TAAAATGCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
ATTATAATAAAAAATTTATAAA
Found at i:7698024 original size:10 final size:10
Alignment explanation
Indices: 7698009--7698039 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
7697999 ATAAAAATTG
*
7698009 TTTTTCTTTT
1 TTTTTCTTAT
7698019 TTTTTCTTAT
1 TTTTTCTTAT
7698029 TTTTTCTTAT
1 TTTTTCTTAT
7698039 T
1 T
7698040 ATTAAGTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTCTTAT
Found at i:7699249 original size:95 final size:97
Alignment explanation
Indices: 7699074--7699493 Score: 295
Period size: 95 Copynumber: 4.3 Consensus size: 97
7699064 TATGAAAGAG
* * **
7699074 GCTCCTCTCAGTAGAGACTCAACAACTTT-AAATTTTGTCTTGAAAAGGCTCATATCAACAAAAG
1 GCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAGGCTCATATCAACAAAAG
* *
7699138 TTCAACAATTTTAAAAATTT-AT-TTGGAAAA
66 CTCAACAATTTTAAAAATTTCATCTTAGAAAA
* * * * * *
7699168 GCTCCTCTCAGTAGAGGTTCAACGACTTTAAAATCTCATCTTGGAAAGGCTTC-TCTTAGCAAAA
1 GCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAGGC-TCATATCAACAAAA
*
7699232 GCTCAATAATTTTAAAAATTTCATCTTAGAAAA
65 GCTCAACAATTTTAAAAATTTCATCTTAGAAAA
* * * * ** * * **
7699265 GTTTCTCTTAGCAGAGGCTCAACAACTTTAAAAAAAAATCAT-TTAGAAAA-GCTCCTTTCAGTA
1 GCTCCTCTCAGTAGAGGCTCAACAACTTT---AAAATCTCATCTT-GAAAAGGCTCATATCAACA
* * * * *
7699328 GAGGCTTAACAACTTTAAAATTTCTCATCTT-GAAAA
62 AAAGCTCAACAATTTTAAAAATT-TCATCTTAGAAAA
* * * * * * *
7699364 GGGCTCATCTCAGCAGAGGCTTAACAACTTTAAAAGT-TCAT-TTGGAAAA-ACTCCTCTCAGCA
1 --GCTCCTCTCAGTAGAGGCTCAACAACTTTAAAA-TCTCATCTT-GAAAAGGCTCATATCAACA
* * * *
7699426 GAGGCTCAACAACTTTAAAAAATTCAT-TTAGAAAA
62 AAAGCTCAACAATTTTAAAAATTTCATCTTAGAAAA
* * *
7699461 GCTCTTCTCAATAGAGGCTTAACAACTTTAAAA
1 GCTCCTCTCAGTAGAGGCTCAACAACTTTAAAA
7699494 ATTCTCATTT
Statistics
Matches: 265, Mismatches: 47, Indels: 27
0.78 0.14 0.08
Matches are distributed among these distances:
94 26 0.10
95 73 0.28
96 6 0.02
97 39 0.15
98 47 0.18
99 31 0.12
100 19 0.07
101 24 0.09
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (97 bp):
GCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAGGCTCATATCAACAAAAG
CTCAACAATTTTAAAAATTTCATCTTAGAAAA
Found at i:7699271 original size:49 final size:49
Alignment explanation
Indices: 7699132--7699463 Score: 173
Period size: 49 Copynumber: 6.8 Consensus size: 49
7699122 CTCATATCAA
* * * * * *
7699132 CAAAAGTTCAACAATTTTAAAAAT-TTAT-TTGGAAAAGCTCCTCTCAG
1 CAAAAGCTCAACAACTTTAAAAATCTCATCTTAGAAAAGCTTCTCTTAG
* * * * * * *
7699179 TAGAGGTTCAACGACTTT-AAAATCTCATCTTGGAAAGGCTTCTCTTAG
1 CAAAAGCTCAACAACTTTAAAAATCTCATCTTAGAAAAGCTTCTCTTAG
* * * *
7699227 CAAAAGCTCAATAATTTTAAAAATTTCATCTTAGAAAAGTTTCTCTTAG
1 CAAAAGCTCAACAACTTTAAAAATCTCATCTTAGAAAAGCTTCTCTTAG
* * ** *
7699276 CAGAGGCTCAACAACTTTAAAAAAAAATCAT-TTAGAAAAGCTCCT-TTCAG
1 CAAAAGCTCAACAACTTT--AAAAATCTCATCTTAGAAAAGCTTCTCTT-AG
* * * * * *
7699326 TAGAGGCTTAACAACTTTAAAATTTCTCATCTT-GAAAAGGGC-TCATCTCAG
1 CAAAAGCTCAACAACTTTAAAA-ATCTCATCTTAGAAAA--GCTTC-TCTTAG
* * * * * * * *
7699377 CAGAGGCTTAACAACTTTAAAAGT-TCAT-TTGGAAAAACTCCTCTCAG
1 CAAAAGCTCAACAACTTTAAAAATCTCATCTTAGAAAAGCTTCTCTTAG
* *
7699424 CAGAGGCTCAACAACTTTAAAAAAT-TCAT-TTAGAAAAGCT
1 CAAAAGCTCAACAACTTT-AAAAATCTCATCTTAGAAAAGCT
7699464 CTTCTCAATA
Statistics
Matches: 227, Mismatches: 43, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
46 5 0.02
47 40 0.18
48 52 0.23
49 60 0.26
50 34 0.15
51 35 0.15
52 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.30
Consensus pattern (49 bp):
CAAAAGCTCAACAACTTTAAAAATCTCATCTTAGAAAAGCTTCTCTTAG
Found at i:7699418 original size:98 final size:95
Alignment explanation
Indices: 7699139--7699494 Score: 288
Period size: 98 Copynumber: 3.7 Consensus size: 95
7699129 CAACAAAAGT
* * * * * * *
7699139 TCAACAA-TTTTAAAAATTTATTTGGAAAAGCTCCTCTCAGTAGAGG-TTCAACGACTTTAAAAT
1 TCAACAACTTTAAAAAATTCATTTAGAAAAGCTCATCTCAGCAGAGGCTT-AACAACTTTAAAAA
* * ** * * * *
7699202 CTCATCTTGGAAAGGCTTCTCTTAGCAAAAGC
65 ATCAT-TTAGAAAAACTCCTCTCAGCAGAGGC
* * * * * *
7699234 TCAATAATTTTAAAAATTTCATCTTAGAAAAGTTTC-TCTTAGCAGAGGCTCAACAACTTTAAAA
1 TCAACAACTTTAAAAAATTCAT-TTAGAAAAG-CTCATCTCAGCAGAGGCTTAACAACTTT---A
* * *
7699298 AAAAATCATTTAGAAAAGCTCCTTTCAGTAGAGGC
61 AAAAATCATTTAGAAAAACTCCTCTCAGCAGAGGC
* **
7699333 TTAACAACTTTAAAATTTCTCATCTT-GAAAAGGGCTCATCTCAGCAGAGGCTTAACAACTTTAA
1 TCAACAACTTTAAAAAAT-TCAT-TTAGAAAA--GCTCATCTCAGCAGAGGCTTAACAACTTTAA
** *
7699397 AAGTTCATTTGGAAAAACTCCTCTCAGCAGAGGC
62 AAAATCATTTAGAAAAACTCCTCTCAGCAGAGGC
* **
7699431 TCAACAACTTTAAAAAATTCATTTAGAAAAGCTCTTCTCAATAGAGGCTTAACAACTTTAAAAA
1 TCAACAACTTTAAAAAATTCATTTAGAAAAGCTCATCTCAGCAGAGGCTTAACAACTTTAAAAA
7699495 TTCTCATTTG
Statistics
Matches: 209, Mismatches: 40, Indels: 24
0.77 0.15 0.09
Matches are distributed among these distances:
95 36 0.17
96 13 0.06
97 35 0.17
98 48 0.23
99 37 0.18
100 17 0.08
101 23 0.11
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (95 bp):
TCAACAACTTTAAAAAATTCATTTAGAAAAGCTCATCTCAGCAGAGGCTTAACAACTTTAAAAAA
TCATTTAGAAAAACTCCTCTCAGCAGAGGC
Found at i:7699477 original size:48 final size:48
Alignment explanation
Indices: 7699139--7699503 Score: 271
Period size: 48 Copynumber: 7.5 Consensus size: 48
7699129 CAACAAAAGT
* * * * * *
7699139 TCAACAA-TTTTAAAAATTTATTTGGAAAAGCTCCTCTCAGTAGAGGT
1 TCAACAACTTTAAAAAATTCATTTAGAAAAGCTCTTCTCAGCAGAGGC
* * * * * *
7699186 TCAACGACTTT--AAAATCTCATCTTGGAAAGGCT-TCTCTTAGCAAAAGC
1 TCAACAACTTTAAAAAAT-TCAT-TTAGAAAAGCTCT-TCTCAGCAGAGGC
* * *
7699234 TCAATAATTTTAAAAATTTCATCTTAGAAAAG-T-TTCTCTTAGCAGAGGC
1 TCAACAACTTTAAAAAATTCAT-TTAGAAAAGCTCTTCTC--AGCAGAGGC
* *
7699283 TCAACAACTTTAAAAAAAAATCATTTAGAAAAGCTCCTT-TCAGTAGAGGC
1 TCAACAACTTT--AAAAAATTCATTTAGAAAAGCT-CTTCTCAGCAGAGGC
* ** *
7699333 TTAACAACTTTAAAATTTCTCATCTT-GAAAAGGGCTCATCTCAGCAGAGGC
1 TCAACAACTTTAAAAAAT-TCAT-TTAGAAAA--GCTCTTCTCAGCAGAGGC
* * * * *
7699384 TTAACAACTTT-AAAAGTTCATTTGGAAAAACTCCTCTCAGCAGAGGC
1 TCAACAACTTTAAAAAATTCATTTAGAAAAGCTCTTCTCAGCAGAGGC
**
7699431 TCAACAACTTTAAAAAATTCATTTAGAAAAGCTCTTCTCAATAGAGGC
1 TCAACAACTTTAAAAAATTCATTTAGAAAAGCTCTTCTCAGCAGAGGC
* *
7699479 TTAACAACTTTAAAAATTCTCATTT
1 TCAACAACTTTAAAAAAT-TCATTT
7699504 GTTTTTCAAA
Statistics
Matches: 255, Mismatches: 42, Indels: 40
0.76 0.12 0.12
Matches are distributed among these distances:
46 5 0.02
47 38 0.15
48 83 0.33
49 52 0.20
50 39 0.15
51 34 0.13
52 2 0.01
53 2 0.01
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.31
Consensus pattern (48 bp):
TCAACAACTTTAAAAAATTCATTTAGAAAAGCTCTTCTCAGCAGAGGC
Found at i:7711582 original size:20 final size:19
Alignment explanation
Indices: 7711550--7711598 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
7711540 TCTTTTTTCC
7711550 TTAATTATTATT-ATTTTT
1 TTAATTATTATTAATTTTT
7711568 TTAATATATTGATTAATTTTT
1 TTAAT-TATT-ATTAATTTTT
*
7711589 ATTTATTATT
1 -TTAATTATT
7711599 TTATAAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 5 0.19
19 4 0.15
20 3 0.12
21 10 0.38
22 4 0.15
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
TTAATTATTATTAATTTTT
Found at i:7711771 original size:13 final size:13
Alignment explanation
Indices: 7711750--7711784 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
7711740 TCGGATAAAA
*
7711750 ATTTCTTTTTCTT
1 ATTTTTTTTTCTT
7711763 ATTTTTTTTTCTT
1 ATTTTTTTTTCTT
7711776 ATTTTTTTT
1 ATTTTTTTT
7711785 ATTATTAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (13 bp):
ATTTTTTTTTCTT
Found at i:7711780 original size:12 final size:12
Alignment explanation
Indices: 7711750--7711790 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
7711740 TCGGATAAAA
7711750 ATTTCTTTTTCTT
1 ATTT-TTTTTCTT
7711763 ATTTTTTTTTCTT
1 A-TTTTTTTTCTT
*
7711776 ATTTTTTTTATT
1 ATTTTTTTTCTT
7711788 ATT
1 ATT
7711791 AAGTTTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
12 13 0.50
13 10 0.38
14 3 0.12
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (12 bp):
ATTTTTTTTCTT
Found at i:7712961 original size:9 final size:8
Alignment explanation
Indices: 7712942--7712985 Score: 52
Period size: 8 Copynumber: 5.4 Consensus size: 8
7712932 TCTTTTCTTC
7712942 TTTTATTT
1 TTTTATTT
7712950 TTTTATTT
1 TTTTATTT
* *
7712958 TTTTGTTA
1 TTTTATTT
*
7712966 TTATATTT
1 TTTTATTT
7712974 TTTGTATTT
1 TTT-TATTT
7712983 TTT
1 TTT
7712986 GTTTAATTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
8 21 0.72
9 8 0.28
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.82
Consensus pattern (8 bp):
TTTTATTT
Found at i:7713186 original size:14 final size:13
Alignment explanation
Indices: 7713167--7713196 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
7713157 TCCAAAGGGA
7713167 TTTTTTTCTTTTCT
1 TTTTTTTCTTTT-T
7713181 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
7713194 TTT
1 TTT
7713197 CGAACATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Found at i:7713340 original size:47 final size:47
Alignment explanation
Indices: 7713288--7713423 Score: 157
Period size: 47 Copynumber: 2.9 Consensus size: 47
7713278 TAAAATCTGA
* *
7713288 AAAAGGCTCCTCTTAGTAGAGGCTCAACAACTTCAAAATTTTATCTTG
1 AAAAGGCTCCTCTTAGCAGAGGCTCAACAACTTCAAAAATTTAT-TTG
* * * * * *
7713336 -AAAGGGTCATCTTAACAGAGGTTCAACAATTTTAAAAATTTATTTG
1 AAAAGGCTCCTCTTAGCAGAGGCTCAACAACTTCAAAAATTTATTTG
* * *
7713382 AAAAAGCTCCTCTTAGCAGAGGCTCAACAATTTTAAAAATTT
1 AAAAGGCTCCTCTTAGCAGAGGCTCAACAACTTCAAAAATTT
7713424 CATCTCTCTC
Statistics
Matches: 74, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
46 3 0.04
47 71 0.96
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.32
Consensus pattern (47 bp):
AAAAGGCTCCTCTTAGCAGAGGCTCAACAACTTCAAAAATTTATTTG
Found at i:7719091 original size:21 final size:21
Alignment explanation
Indices: 7719066--7719114 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
7719056 AGGTGCAGGT
*
7719066 GGTAGGTGCTACAGGGCTCTA
1 GGTAGGCGCTACAGGGCTCTA
7719087 GGTAGGCGCTACAGGGCTCTA
1 GGTAGGCGCTACAGGGCTCTA
7719108 GGTAGGC
1 GGTAGGC
7719115 TAGTGGTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.18, C:0.20, G:0.41, T:0.20
Consensus pattern (21 bp):
GGTAGGCGCTACAGGGCTCTA
Found at i:7720137 original size:11 final size:11
Alignment explanation
Indices: 7720121--7720145 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7720111 TGAAATTTGG
7720121 TTTTTTTTTCT
1 TTTTTTTTTCT
7720132 TTTTTTTTTCT
1 TTTTTTTTTCT
7720143 TTT
1 TTT
7720146 ATGTTATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:7722369 original size:136 final size:136
Alignment explanation
Indices: 7722120--7722372 Score: 294
Period size: 136 Copynumber: 1.9 Consensus size: 136
7722110 ACAATAGCTC
* * * *
7722120 TTCTAAGTAGAGGCTCGATAACTTTTGAAACTTAAAATGACTTCTCTAGATAGAGGCTCAAAAAC
1 TTCTAAGGAGACGCTCGATAACTTTTGAAAATTAAAATGACTTCTCTAGATAAAGGCTCAAAAAC
* * * * * * * * *
7722185 TTTAAAATTTTTATCTAGAGAAAGCTCTTCCAAGCAGAGGTTCGACAACTTTTGAAAACTTAAAA
66 TTTAAAATTCTCATCTAAAAAAAACTCCTCCAAGCAGAAGCTCAACAACTTTTGAAAACTTAAAA
7722250 TGGCTT
131 TGGCTT
* * * *
7722256 TTCTAAGGAGACGTTCGATAACTTTTGAAAATTTAAATGGC-TCATCTA-AGTAAAGGCTCAATA
1 TTCTAAGGAGACGCTCGATAACTTTTGAAAATTAAAATGACTTC-TCTAGA-TAAAGGCTCAAAA
* * *
7722319 ATTTTAAAATTCTCATCTAAAAAAAACTCCTCTAAGCATAAGCTCAACAACTTT
64 ACTTTAAAATTCTCATCTAAAAAAAACTCCTCCAAGCAGAAGCTCAACAACTTT
7722373 AAAATTCTTA
Statistics
Matches: 95, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
135 3 0.03
136 92 0.97
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.32
Consensus pattern (136 bp):
TTCTAAGGAGACGCTCGATAACTTTTGAAAATTAAAATGACTTCTCTAGATAAAGGCTCAAAAAC
TTTAAAATTCTCATCTAAAAAAAACTCCTCCAAGCAGAAGCTCAACAACTTTTGAAAACTTAAAA
TGGCTT
Found at i:7722424 original size:49 final size:49
Alignment explanation
Indices: 7722311--7722435 Score: 133
Period size: 50 Copynumber: 2.5 Consensus size: 49
7722301 CTAAGTAAAG
* * *
7722311 GCTCAATAATTTTAAAATTCTCATCTAAAAAAAACTCCTCTAAGCATAA
1 GCTCAACAACTTTAAAATTCTCATCTAAAAAAAACTCCTCTAAGCAGAA
* ** * *
7722360 GCTCAACAACTTTAAAATTCTTATCTAAAAAAAGGTTCCTCTAAGTAGAG
1 GCTCAACAACTTTAAAATTCTCATCTAAAAAAA-ACTCCTCTAAGCAGAA
** * *
7722410 GCTTGACAACTTAAAAATTCACATCT
1 GCTCAACAACTTTAAAATTCTCATCT
7722436 TTTCTTGCAA
Statistics
Matches: 62, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
49 30 0.48
50 32 0.52
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (49 bp):
GCTCAACAACTTTAAAATTCTCATCTAAAAAAAACTCCTCTAAGCAGAA
Found at i:7726917 original size:16 final size:16
Alignment explanation
Indices: 7726896--7726926 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7726886 TAGAGAGCAA
7726896 TTAAAGATTTAAAGTT
1 TTAAAGATTTAAAGTT
*
7726912 TTAAAGCTTTAAAGT
1 TTAAAGATTTAAAGT
7726927 ACATTACTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.03, G:0.13, T:0.42
Consensus pattern (16 bp):
TTAAAGATTTAAAGTT
Found at i:7732317 original size:17 final size:18
Alignment explanation
Indices: 7732290--7732323 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7732280 TTGTTTTTTA
7732290 TTTTTGATTTTTGATTGG
1 TTTTTGATTTTTGATTGG
*
7732308 TTTTTG-TTTTTTATTG
1 TTTTTGATTTTTGATTG
7732324 AAAAAGAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.09, C:0.00, G:0.18, T:0.74
Consensus pattern (18 bp):
TTTTTGATTTTTGATTGG
Found at i:7734602 original size:21 final size:21
Alignment explanation
Indices: 7734573--7734626 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
7734563 TATTTTTTAC
*
7734573 TAATGTTTAATTAAT-TATTAT
1 TAATATTTAATTAATGTATT-T
7734594 TAATATTTAATATTAATGTATTT
1 TAATATTT-A-ATTAATGTATTT
*
7734617 TGATATTTAA
1 TAATATTTAA
7734627 AAAAAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
21 8 0.29
22 2 0.07
23 14 0.50
24 4 0.14
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (21 bp):
TAATATTTAATTAATGTATTT
Found at i:7734622 original size:23 final size:23
Alignment explanation
Indices: 7734582--7734626 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
7734572 CTAATGTTTA
7734582 ATTAATTATTATTAATATTTAAT
1 ATTAATTATTATTAATATTTAAT
*
7734605 ATTAATGTATT-TTGATATTTAA
1 ATTAAT-TATTATTAATATTTAA
7734627 AAAAAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
ATTAATTATTATTAATATTTAAT
Found at i:7734841 original size:9 final size:9
Alignment explanation
Indices: 7734829--7734877 Score: 59
Period size: 9 Copynumber: 5.8 Consensus size: 9
7734819 AATAATATTT
7734829 AACAAAACA
1 AACAAAACA
*
7734838 AACAAAAAA
1 AACAAAACA
7734847 AAC-AAAC-
1 AACAAAACA
7734854 AA-AAAACA
1 AACAAAACA
*
7734862 AACAAAATA
1 AACAAAACA
7734871 AACAAAA
1 AACAAAA
7734878 ATAAGACAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
7 6 0.18
8 5 0.15
9 23 0.68
ACGTcount: A:0.82, C:0.16, G:0.00, T:0.02
Consensus pattern (9 bp):
AACAAAACA
Found at i:7734850 original size:13 final size:13
Alignment explanation
Indices: 7734832--7734876 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
7734822 AATATTTAAC
7734832 AAAACAAACAAAA
1 AAAACAAACAAAA
7734845 AAAACAAAC--AA
1 AAAACAAACAAAA
7734856 AAAACAAACAAAA
1 AAAACAAACAAAA
*
7734869 TAAACAAA
1 AAAACAAA
7734877 AATAAGACAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
11 11 0.38
13 18 0.62
ACGTcount: A:0.82, C:0.16, G:0.00, T:0.02
Consensus pattern (13 bp):
AAAACAAACAAAA
Found at i:7734857 original size:11 final size:11
Alignment explanation
Indices: 7734832--7734868 Score: 56
Period size: 11 Copynumber: 3.2 Consensus size: 11
7734822 AATATTTAAC
7734832 AAAACAAACAAAA
1 AAAACAAAC--AA
7734845 AAAACAAACAA
1 AAAACAAACAA
7734856 AAAACAAACAA
1 AAAACAAACAA
7734867 AA
1 AA
7734869 TAAACAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 15 0.62
13 9 0.38
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAACAAACAA
Found at i:7734888 original size:20 final size:20
Alignment explanation
Indices: 7734837--7734878 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
7734827 TTAACAAAAC
*
7734837 AAACAAAAAAAACAAACAAA
1 AAACAAACAAAACAAACAAA
*
7734857 AAACAAACAAAATAAACAAA
1 AAACAAACAAAACAAACAAA
7734877 AA
1 AA
7734879 TAAGACAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.83, C:0.14, G:0.00, T:0.02
Consensus pattern (20 bp):
AAACAAACAAAACAAACAAA
Found at i:7736224 original size:19 final size:18
Alignment explanation
Indices: 7736184--7736227 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
7736174 TTGAAAAAAA
* * *
7736184 TAATAAATAAAAATTGAT
1 TAATAAATAAAAAATAAG
7736202 TAATAAATTAAAAAATAAG
1 TAATAAA-TAAAAAATAAG
7736221 TAATAAA
1 TAATAAA
7736228 AATAGGAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (18 bp):
TAATAAATAAAAAATAAG
Found at i:7736817 original size:194 final size:193
Alignment explanation
Indices: 7736488--7736866 Score: 661
Period size: 194 Copynumber: 2.0 Consensus size: 193
7736478 CATGACATAA
* *
7736488 TTTCTTACGAAAAGTAAATTTAGACTCCCAAAGATGAGATTCTAAAAGTATTCCGAGTAGAGATA
1 TTTCTTACGAAAAATAAATTGAGACTCCCAAAGATGAGATTCTAAAAGTATTCCGAGTAGAGATA
*
7736553 CTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGAACATTTTAAG
66 CTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGAACATCTTAAG
*
7736618 AATTATTTCAATAAAAAGGTTTTAATTTATTTTCCTCGAGAATAAATTTTTTTTAACATGATAT
131 AATTATTTCAATAAAAAGGTTTTAAGTTATTTTCCTCGAGAAT-AATTTTTTTTAACATGATAT
*
7736682 TTTCTTACGAAAAATAAATTCGAGCCT-CCAAAGATGAGATTCTAAAAGTATTCCGAGTAGAGAT
1 TTTCTTACGAAAAATAAATT-GAGACTCCCAAAGATGAGATTCTAAAAGTATTCCGAGTAGAGAT
* *
7736746 GCTTTAAGAAATCTCTAGGTGAGAGAGAGTTCTTTTAATGTTACCAACGTACTGGAACATCTTAA
65 ACTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGAACATCTTAA
*
7736811 GAATTATTTCAATAAAAAGGTTTTAAGTTATTTTTCTCGAGAATAATTTTTTTTAA
130 GAATTATTTCAATAAAAAGGTTTTAAGTTATTTTCCTCGAGAATAATTTTTTTTAA
7736867 AAAAAATAAT
Statistics
Matches: 176, Mismatches: 8, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
193 12 0.07
194 160 0.91
195 4 0.02
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (193 bp):
TTTCTTACGAAAAATAAATTGAGACTCCCAAAGATGAGATTCTAAAAGTATTCCGAGTAGAGATA
CTTTAAGAAATCTCTAGGTGAGAAAGAGTTCTTTTAATGTTACCAACGTACTGGAACATCTTAAG
AATTATTTCAATAAAAAGGTTTTAAGTTATTTTCCTCGAGAATAATTTTTTTTAACATGATAT
Found at i:7740333 original size:109 final size:109
Alignment explanation
Indices: 7740180--7740721 Score: 642
Period size: 109 Copynumber: 5.0 Consensus size: 109
7740170 AAGGAGACTG
* * * * * *
7740180 GGATTAAACCGTAATTTAAAAA-CTATAAAAATTATCAGGATTAAACTACGAGTCAAAGATTAAA
1 GGATTAAACCGTAAGTCAAAAAGCTATAAGAATGATCAGGATTAAACCATGAGTCAAAGATTAAA
* *
7740244 GATAACTGGGACTGAATCGTAAGTCAAAGAAATAAAAATGACTA
66 GATAACTGGGACTGAATCGTAAGTCAAAGAAATAAAAGTAACTA
* * * * *
7740288 AGATTAAACCGTAAGTCGAGAAGCTATAAAAATGATCGGGATTAAACCATGAGTCAAAGATTAAA
1 GGATTAAACCGTAAGTCAAAAAGCTATAAGAATGATCAGGATTAAACCATGAGTCAAAGATTAAA
* *
7740353 GATAACTGGGACTGAATTGTAAGTCAAAGAAATAAAAGCAACTA
66 GATAACTGGGACTGAATCGTAAGTCAAAGAAATAAAAGTAACTA
* *
7740397 GGATTAAACCATAAGTCAAAAAGCTATAAGAATGATC-GAGATTAAACCATGAGTCAAAGCTTAA
1 GGATTAAACCGTAAGTCAAAAAGCTATAAGAATGATCAG-GATTAAACCATGAGTCAAAGATTAA
* * *
7740461 AGATAACTGAGACTGAATCGTAAGTCAAAGAACTAAAAGTGACTA
65 AGATAACTGGGACTGAATCGTAAGTCAAAGAAATAAAAGTAACTA
* * * *
7740506 GGATTAAACCGTAAGTCAAAAAGCTATAAGAATGATCAAGATTAAACCACGAATCAAAGATTAAC
1 GGATTAAACCGTAAGTCAAAAAGCTATAAGAATGATCAGGATTAAACCATGAGTCAAAGATTAAA
** * * * *
7740571 GACGA-TCAGGACTGAATCGCAAGTCAAAGAAATAAAAGCAATTA
66 GATAACT-GGGACTGAATCGTAAGTCAAAGAAATAAAAGTAACTA
* * * * * * *
7740615 GGATTAAACCGTAAGTCGAGAAGTTATAAGAATGATTAGGATTAAACCATAAATCAAAGATTAAC
1 GGATTAAACCGTAAGTCAAAAAGCTATAAGAATGATCAGGATTAAACCATGAGTCAAAGATTAAA
* * * ** *
7740680 GATGACCGGGACTGAA-CTGCAAGTCAGGGAAATAAAAATAAC
66 GATAACTGGGACTGAATC-GTAAGTCAAAGAAATAAAAGTAAC
7740722 CATAACTAAG
Statistics
Matches: 374, Mismatches: 54, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
108 20 0.05
109 354 0.95
ACGTcount: A:0.47, C:0.13, G:0.19, T:0.21
Consensus pattern (109 bp):
GGATTAAACCGTAAGTCAAAAAGCTATAAGAATGATCAGGATTAAACCATGAGTCAAAGATTAAA
GATAACTGGGACTGAATCGTAAGTCAAAGAAATAAAAGTAACTA
Found at i:7740444 original size:38 final size:37
Alignment explanation
Indices: 7740398--7740554 Score: 121
Period size: 38 Copynumber: 4.3 Consensus size: 37
7740388 AAGCAACTAG
7740398 GATTAAACCATAAGTCAAAAAGCTATAAGAATGATCGA
1 GATTAAACCATAAGTCAAAAAGCTATAA-AATGATCGA
* *
7740436 GATTAAACCATGAGTC--AAAGCT-TAAAGAT-AACTGA
1 GATTAAACCATAAGTCAAAAAGCTATAAA-ATGATC-GA
* * * * * *
7740471 GACTGAATCGTAAGTCAAAGAA-CTA-AAAGTGA-CTA
1 GATTAAACCATAAGTCAAA-AAGCTATAAAATGATCGA
* *
7740506 GGATTAAACCGTAAGTCAAAAAGCTATAAGAATGATCAA
1 -GATTAAACCATAAGTCAAAAAGCTATAA-AATGATCGA
7740545 GATTAAACCA
1 GATTAAACCA
7740555 CGAATCAAAG
Statistics
Matches: 92, Mismatches: 15, Indels: 24
0.70 0.11 0.18
Matches are distributed among these distances:
34 3 0.03
35 21 0.23
36 27 0.29
37 9 0.10
38 30 0.33
39 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.21
Consensus pattern (37 bp):
GATTAAACCATAAGTCAAAAAGCTATAAAATGATCGA
Found at i:7740522 original size:36 final size:36
Alignment explanation
Indices: 7740261--7740525 Score: 116
Period size: 36 Copynumber: 7.3 Consensus size: 36
7740251 GGGACTGAAT
* * *
7740261 CGTAAGTCAAAGAAATAAAAATGACTAAGATTAAAC
1 CGTAAGTCAAAGAACTAAAAGTGACTAGGATTAAAC
* * *
7740297 CGTAAGTC-GAGAAGCTATAAAAATGA-TCGGGATTAAAC
1 CGTAAGTCAAAGAA-C--TAAAAGTGACT-AGGATTAAAC
* * * * * * * *
7740335 CATGAGTCAAAG-A-TTAAAGATAACTGGGACTGAAT
1 CGTAAGTCAAAGAACTAAAAG-TGACTAGGATTAAAC
* * **
7740370 TGTAAGTCAAAGAAATAAAAGCAACTAGGATTAAAC
1 CGTAAGTCAAAGAACTAAAAGTGACTAGGATTAAAC
* * *
7740406 CATAAGTCAAA-AAGCTATAAGAATGA-TCGAGATTAAAC
1 CGTAAGTCAAAGAA-CTA-AA-AGTGACTAG-GATTAAAC
* * * * * * *
7740444 CATGAGTCAAAG--CTTAAAGATAACT-GAGACTGAAT
1 CGTAAGTCAAAGAACTAAAAG-TGACTAG-GATTAAAC
7740479 CGTAAGTCAAAGAACTAAAAGTGACTAGGATTAAAC
1 CGTAAGTCAAAGAACTAAAAGTGACTAGGATTAAAC
7740515 CGTAAGTCAAA
1 CGTAAGTCAAA
7740526 AAGCTATAAG
Statistics
Matches: 167, Mismatches: 43, Indels: 38
0.67 0.17 0.15
Matches are distributed among these distances:
34 5 0.03
35 45 0.27
36 54 0.32
37 17 0.10
38 44 0.26
39 2 0.01
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.21
Consensus pattern (36 bp):
CGTAAGTCAAAGAACTAAAAGTGACTAGGATTAAAC
Found at i:7741783 original size:20 final size:20
Alignment explanation
Indices: 7741753--7741799 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 20
7741743 GAATCACTTC
* *
7741753 TTTTATCTTTTTTTTGTTGTTT
1 TTTTAT-TTTTTTAT-TTATTT
7741775 TTTTATTTTTTTATTTATTT
1 TTTTATTTTTTTATTTATTT
7741795 TTTTA
1 TTTTA
7741800 AGCAAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 10 0.43
21 7 0.30
22 6 0.26
ACGTcount: A:0.11, C:0.02, G:0.04, T:0.83
Consensus pattern (20 bp):
TTTTATTTTTTTATTTATTT
Found at i:7741799 original size:12 final size:11
Alignment explanation
Indices: 7741753--7741798 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
7741743 GAATCACTTC
*
7741753 TTTTATCTTTT
1 TTTTATTTTTT
* *
7741764 TTTTGTTGTTT
1 TTTTATTTTTT
7741775 TTTTATTTTTT
1 TTTTATTTTTT
7741786 TATTTATTTTTT
1 T-TTTATTTTTT
7741798 T
1 T
7741799 AAGCAAAATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
11 18 0.62
12 11 0.38
ACGTcount: A:0.09, C:0.02, G:0.04, T:0.85
Consensus pattern (11 bp):
TTTTATTTTTT
Found at i:7749573 original size:13 final size:12
Alignment explanation
Indices: 7749540--7749574 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
7749530 AGATTTTCAG
7749540 AAGGTTTTGAGT
1 AAGGTTTTGAGT
*
7749552 AAGGGTTTGAGT
1 AAGGTTTTGAGT
7749564 AGAGGTTTTGA
1 A-AGGTTTTGA
7749575 AGGTTTGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (12 bp):
AAGGTTTTGAGT
Found at i:7749691 original size:15 final size:14
Alignment explanation
Indices: 7749567--7749687 Score: 50
Period size: 14 Copynumber: 8.1 Consensus size: 14
7749557 TTTGAGTAGA
7749567 GGTTTTGAAGGTTT-
1 GGTTTT-AAGGTTTG
7749581 GGTTTTAAGGTTTAGAG
1 GGTTTTAAGGTTT---G
*
7749598 GGTTTTAAGGCTTG
1 GGTTTTAAGGTTTG
** *
7749612 AATTTT-AGGATATG
1 GGTTTTAAGG-TTTG
* * *
7749626 GAAGGTTTAGGGTTTT
1 G--GTTTTAAGGTTTG
*
7749642 GATTTT-AGAGTTTG
1 GGTTTTAAG-GTTTG
7749656 GAGATTTTAAGGTTTG
1 G-G-TTTTAAGGTTTG
*
7749672 GGTTTTGAGGTTTG
1 GGTTTTAAGGTTTG
7749686 GG
1 GG
7749688 GTTTGGATAT
Statistics
Matches: 78, Mismatches: 17, Indels: 24
0.66 0.14 0.20
Matches are distributed among these distances:
13 11 0.14
14 34 0.44
15 1 0.01
16 16 0.21
17 16 0.21
ACGTcount: A:0.20, C:0.01, G:0.35, T:0.45
Consensus pattern (14 bp):
GGTTTTAAGGTTTG
Found at i:7749724 original size:14 final size:14
Alignment explanation
Indices: 7749682--7749725 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
7749672 GGTTTTGAGG
7749682 TTTGGGGTTTGGAT
1 TTTGGGGTTTGGAT
* **
7749696 ATAAGGGTTTGGAT
1 TTTGGGGTTTGGAT
7749710 TTTGGGGTTTGGAT
1 TTTGGGGTTTGGAT
7749724 TT
1 TT
7749726 AAAGGATTTC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.14, C:0.00, G:0.39, T:0.48
Consensus pattern (14 bp):
TTTGGGGTTTGGAT
Found at i:7752129 original size:21 final size:21
Alignment explanation
Indices: 7752103--7752148 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
7752093 AATTCTAGAG
* *
7752103 TTTTGGGTTTTCGA-TTTTGGT
1 TTTT-GGTTTTAGAGTTTTGGA
7752124 TTTTGGTTTTAGAGTTTTGGA
1 TTTTGGTTTTAGAGTTTTGGA
7752145 TTTT
1 TTTT
7752149 AGGGCTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.09, C:0.02, G:0.26, T:0.63
Consensus pattern (21 bp):
TTTTGGTTTTAGAGTTTTGGA
Found at i:7753836 original size:25 final size:25
Alignment explanation
Indices: 7753808--7753858 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
7753798 CGATTTTTGG
7753808 TGTTGTGGGTTTTTTGTTTTATGAT
1 TGTTGTGGGTTTTTTGTTTTATGAT
7753833 TGTTGTGGGTTTTTTGTTTTATGAT
1 TGTTGTGGGTTTTTTGTTTTATGAT
7753858 T
1 T
7753859 TTTCGGGTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.08, C:0.00, G:0.27, T:0.65
Consensus pattern (25 bp):
TGTTGTGGGTTTTTTGTTTTATGAT
Found at i:7753873 original size:31 final size:30
Alignment explanation
Indices: 7753784--7753874 Score: 102
Period size: 31 Copynumber: 3.1 Consensus size: 30
7753774 GTTATATTAT
**
7753784 GGTTTTTTGTTTTGCGATTTTTGGTGTTGTG
1 GGTTTTTTGTTTTATGATTTTTGG-GTTGTG
7753815 GGTTTTTTGTTTTATGA---TT--GTTGTG
1 GGTTTTTTGTTTTATGATTTTTGGGTTGTG
*
7753840 GGTTTTTTGTTTTATGATTTTTCGGGTTTTG
1 GGTTTTTTGTTTTATGATTTTT-GGGTTGTG
7753871 GGTT
1 GGTT
7753875 ATTTAGGTTG
Statistics
Matches: 51, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
25 23 0.45
28 4 0.08
31 24 0.47
ACGTcount: A:0.05, C:0.02, G:0.30, T:0.63
Consensus pattern (30 bp):
GGTTTTTTGTTTTATGATTTTTGGGTTGTG
Found at i:7754249 original size:18 final size:18
Alignment explanation
Indices: 7754209--7754263 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
7754199 ATATTTAATT
*
7754209 GTAAAACTAAATAATAAAA
1 GTAAAAATAAA-AATAAAA
** *
7754228 -TAAAGGTAAAAGTAAAA
1 GTAAAAATAAAAATAAAA
7754245 GTAAAAATAAAAATAAAA
1 GTAAAAATAAAAATAAAA
7754263 G
1 G
7754264 CAATGGGCTC
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
17 6 0.21
18 23 0.79
ACGTcount: A:0.69, C:0.02, G:0.11, T:0.18
Consensus pattern (18 bp):
GTAAAAATAAAAATAAAA
Found at i:7754820 original size:35 final size:35
Alignment explanation
Indices: 7754744--7754883 Score: 115
Period size: 35 Copynumber: 4.0 Consensus size: 35
7754734 GACTAACCCC
* *
7754744 TAAGTCAAAAAATAAAAATGA-TCGAGACTGAACCA
1 TAAGTCAAAGAATAAAAATGACT-GAGATTGAACCA
* * *
7754779 CAAGTCAAAGAATAAAAATGACTGAGATTGACCCG
1 TAAGTCAAAGAATAAAAATGACTGAGATTGAACCA
* * * *
7754814 TGAGTC-AAGAAATAAAGGATGACTAAGATTAAACCA
1 TAAGTCAAAG-AATAAA-AATGACTGAGATTGAACCA
* * *
7754850 TAAGTCAAAGGATACAGATGACT-AGGATTGAACC
1 TAAGTCAAAGAATAAAAATGACTGA-GATTGAACC
7754884 GTGAGTTAGG
Statistics
Matches: 84, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
34 4 0.05
35 53 0.63
36 24 0.29
37 3 0.04
ACGTcount: A:0.48, C:0.14, G:0.19, T:0.19
Consensus pattern (35 bp):
TAAGTCAAAGAATAAAAATGACTGAGATTGAACCA
Found at i:7755336 original size:281 final size:282
Alignment explanation
Indices: 7754823--7755386 Score: 790
Period size: 281 Copynumber: 2.0 Consensus size: 282
7754813 GTGAGTCAAG
* * **
7754823 AAATAAAGGATGACTAAGATTAAACCATAAGTCAAAGGATACAGATGACTAGGATTGAACCGTGA
1 AAATAAAGGATGACTAAGATTAAACCAAAAGTCAAAGGATACAGATGACTAGGATTAAACCACGA
* * * * * *
7754888 GTTAGGGAATGAAGATGATCGGGACTAAGCCATAAGTCGAATGAGATGACTTAGATGAAATTATA
66 GTCAGGGAATAAAGATGATCGGGACTAAGCCACAAGTCGAATAAGATGACTTAGATGAAACTACA
* * *
7754953 AATTAAATGAGGTGACTTCCAATCTCAGCTTGCGTACCAACTAATTCTAGGCTTTATGCCAACTA
131 AATTAAATAAGGTGACTTCCAATCTCAACTTGCATACCAACTAATTCTAGGCTTTATGCCAACTA
*** * *
7755018 ATCTAGGCTTGTGTGTCAGCTAAAGTGGGCATAAATTTAGGTGTCAAATAATCTTTGCTTAAATT
196 ATCTAGGCTTACATGTCAGCTAAAGTAGGCATAAATTTAGGTGTCAAATAATCTTGGCTTAAATT
*
7755083 TTTATTAGGTGCCAGCTACATT
261 TTTATCAGGTGCCAGCTACATT
* * * * *
7755105 AAATAAAGGATGACTAGGATTGAATCAAAAGTTGAAA-GATAGAGATGACTAGGATTAAACCACG
1 AAATAAAGGATGACTAAGATTAAACCAAAAG-TCAAAGGATACAGATGACTAGGATTAAACCACG
*
7755169 AGTCAGGGAATAAAGATGATC-GGACTAAGCCACAAGTCGAATAAGATGACTTAGATTAAACTAC
65 AGTCAGGGAATAAAGATGATCGGGACTAAGCCACAAGTCGAATAAGATGACTTAGATGAAACTAC
** * *
7755233 AGGTTGAATAAGGTGACTTCCAATCTCAACTTGCATACCAACTAATTCTAGGTTTTATGCCAACT
130 AAATTAAATAAGGTGACTTCCAATCTCAACTTGCATACCAACTAATTCTAGGCTTTATGCCAACT
* * * * *
7755298 AATCTAGGCTTACATGTCAGCTAAAGTAGGCTTAAATTTATGTGTCAGATAATCTTGGTTTACAT
195 AATCTAGGCTTACATGTCAGCTAAAGTAGGCATAAATTTAGGTGTCAAATAATCTTGGCTTAAAT
*
7755363 TTTTATCAGGTGCCAGCTGCATT
260 TTTTATCAGGTGCCAGCTACATT
7755386 A
1 A
7755387 GATTAAAACT
Statistics
Matches: 246, Mismatches: 35, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
281 173 0.70
282 69 0.28
283 4 0.02
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.29
Consensus pattern (282 bp):
AAATAAAGGATGACTAAGATTAAACCAAAAGTCAAAGGATACAGATGACTAGGATTAAACCACGA
GTCAGGGAATAAAGATGATCGGGACTAAGCCACAAGTCGAATAAGATGACTTAGATGAAACTACA
AATTAAATAAGGTGACTTCCAATCTCAACTTGCATACCAACTAATTCTAGGCTTTATGCCAACTA
ATCTAGGCTTACATGTCAGCTAAAGTAGGCATAAATTTAGGTGTCAAATAATCTTGGCTTAAATT
TTTATCAGGTGCCAGCTACATT
Found at i:7755526 original size:64 final size:65
Alignment explanation
Indices: 7755418--7755552 Score: 218
Period size: 64 Copynumber: 2.1 Consensus size: 65
7755408 AATAAAACTG
* *
7755418 GGCTTAAATTTGGGTGCTAGCTAAGCTTGGGCTTAAAATCTTTTCATGGTGTGCCAGATAATCTA
1 GGCTTAAATTTGGGTGCTAGCTAAGCTTAGGCTTAAAATCTTTTCAAGGTGTGCCAGATAATCTA
* * *
7755483 GGCTTAAATTTGGGTGCTAGTTAAGC-TAGGCTTAAAATCTTTTCAAGGTGTGCCAGATAATTTG
1 GGCTTAAATTTGGGTGCTAGCTAAGCTTAGGCTTAAAATCTTTTCAAGGTGTGCCAGATAATCTA
7755547 GGCTTA
1 GGCTTA
7755553 TATATTTCTT
Statistics
Matches: 65, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
64 40 0.62
65 25 0.38
ACGTcount: A:0.25, C:0.14, G:0.25, T:0.36
Consensus pattern (65 bp):
GGCTTAAATTTGGGTGCTAGCTAAGCTTAGGCTTAAAATCTTTTCAAGGTGTGCCAGATAATCTA
Found at i:7755794 original size:22 final size:22
Alignment explanation
Indices: 7755766--7755814 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
7755756 TATTTCAGGT
*
7755766 TTATGTGCCAGCTAATCTAGGC
1 TTATGTGCCAACTAATCTAGGC
* *
7755788 TTATGTGCCAATTAATCTGGGC
1 TTATGTGCCAACTAATCTAGGC
7755810 TTATG
1 TTATG
7755815 GCTTTTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.22, T:0.37
Consensus pattern (22 bp):
TTATGTGCCAACTAATCTAGGC
Found at i:7756471 original size:21 final size:21
Alignment explanation
Indices: 7756446--7756490 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7756436 CCATATTTAT
*
7756446 TTTTCTATTTCTATTTCTTTC
1 TTTTCTATTTCTAGTTCTTTC
* * *
7756467 TTTTCTTTTTTTGGTTCTTTC
1 TTTTCTATTTCTAGTTCTTTC
7756488 TTT
1 TTT
7756491 CTCTTTTTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.04, C:0.16, G:0.04, T:0.76
Consensus pattern (21 bp):
TTTTCTATTTCTAGTTCTTTC
Found at i:7756497 original size:21 final size:21
Alignment explanation
Indices: 7756460--7756500 Score: 73
Period size: 21 Copynumber: 1.9 Consensus size: 21
7756450 CTATTTCTAT
7756460 TTCTTTCTTTTCTTTTTTTGG
1 TTCTTTCTTTTCTTTTTTTGG
7756481 TTCTTTCTTTCTCTTTTTTT
1 TTCTTTCTTT-TCTTTTTTT
7756501 AGACCTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.00, C:0.17, G:0.05, T:0.78
Consensus pattern (21 bp):
TTCTTTCTTTTCTTTTTTTGG
Found at i:7756508 original size:22 final size:21
Alignment explanation
Indices: 7756462--7756513 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
7756452 ATTTCTATTT
* **
7756462 CTTTCTTTTCTTTTTTTGGTT
1 CTTTCTTTTCTTTTTTTAGAC
7756483 CTTTCTTTCTCTTTTTTTAGAC
1 CTTTCTTT-TCTTTTTTTAGAC
*
7756505 CTTTTTTTT
1 CTTTCTTTT
7756514 TTGTTAATGC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
21 9 0.35
22 17 0.65
ACGTcount: A:0.04, C:0.17, G:0.06, T:0.73
Consensus pattern (21 bp):
CTTTCTTTTCTTTTTTTAGAC
Found at i:7756874 original size:33 final size:32
Alignment explanation
Indices: 7756837--7756907 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 32
7756827 TTTTCTTATG
*
7756837 CTTTTCATCCATTCATTTTTTTTC-TTTTTCCTT
1 CTTTT-ATCC-TTCATTTCTTTTCGTTTTTCCTT
*
7756870 CTTTTATTCTTCATTTCTTTTCGTTTTTTCCTT
1 CTTTTATCCTTCATTTCTTTTCG-TTTTTCCTT
*
7756903 TTTTT
1 CTTTT
7756908 TTACATTTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 12 0.36
32 3 0.09
33 18 0.55
ACGTcount: A:0.07, C:0.21, G:0.01, T:0.70
Consensus pattern (32 bp):
CTTTTATCCTTCATTTCTTTTCGTTTTTCCTT
Found at i:7756918 original size:31 final size:32
Alignment explanation
Indices: 7756850--7756921 Score: 82
Period size: 31 Copynumber: 2.3 Consensus size: 32
7756840 TTCATCCATT
*
7756850 CATTTT-TTTTCTTTTTCCTTCTTTTATTCTT
1 CATTTTCTTTTCTTTTTCCTTCTTTTATTCTA
7756881 CA-TTTCTTTTCGTTTTTTCCTT-TTTT-TT-TA
1 CATTTTCTTTTC--TTTTTCCTTCTTTTATTCTA
7756911 CATTTTCTTTT
1 CATTTTCTTTT
7756922 ACATTCTTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
30 6 0.17
31 17 0.47
32 4 0.11
33 9 0.25
ACGTcount: A:0.07, C:0.18, G:0.01, T:0.74
Consensus pattern (32 bp):
CATTTTCTTTTCTTTTTCCTTCTTTTATTCTA
Found at i:7762799 original size:37 final size:30
Alignment explanation
Indices: 7762758--7762837 Score: 88
Period size: 30 Copynumber: 2.4 Consensus size: 30
7762748 CTTGCGTGTT
7762758 GATTTTAAAGATTTAGGGTATCATTTAAGGGTTTTG
1 GATTTTAAAG-TTTAGGG--T--TTT-AGGGTTTTG
*
7762794 AGATTTTAAAGTTTTGGGTTTTAGGGTTTTG
1 -GATTTTAAAGTTTAGGGTTTTAGGGTTTTG
7762825 GATTTTAAAGTTT
1 GATTTTAAAGTTT
7762838 TGAAATTTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
30 13 0.31
31 9 0.21
32 3 0.07
34 1 0.02
36 6 0.14
37 10 0.24
ACGTcount: A:0.25, C:0.01, G:0.25, T:0.49
Consensus pattern (30 bp):
GATTTTAAAGTTTAGGGTTTTAGGGTTTTG
Found at i:7762822 original size:15 final size:15
Alignment explanation
Indices: 7762780--7762831 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
7762770 TTAGGGTATC
*
7762780 ATTTAAGGGTTTTGAG
1 ATTTTAGGGTTTTG-G
**
7762796 ATTTTAAAGTTTTGG
1 ATTTTAGGGTTTTGG
*
7762811 GTTTTAGGGTTTTGG
1 ATTTTAGGGTTTTGG
7762826 ATTTTA
1 ATTTTA
7762832 AAGTTTTGAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
15 18 0.62
16 11 0.38
ACGTcount: A:0.21, C:0.00, G:0.27, T:0.52
Consensus pattern (15 bp):
ATTTTAGGGTTTTGG
Done.