Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 39 of 77
Found at i:7762837 original size:15 final size:16
Alignment explanation
Indices: 7762788--7762853 Score: 73
Period size: 15 Copynumber: 4.2 Consensus size: 16
7762778 TCATTTAAGG
7762788 GTTTTGAGATTTTAAA
1 GTTTTGAGATTTTAAA
* **
7762804 GTTTTG-GGTTTTAGG
1 GTTTTGAGATTTTAAA
7762819 GTTTTG-GATTTTAAA
1 GTTTTGAGATTTTAAA
* *
7762834 GTTTTGAAATTTTAAG
1 GTTTTGAGATTTTAAA
7762850 GTTT
1 GTTT
7762854 CAAGGGTTTA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
15 24 0.59
16 17 0.41
ACGTcount: A:0.23, C:0.00, G:0.24, T:0.53
Consensus pattern (16 bp):
GTTTTGAGATTTTAAA
Found at i:7762847 original size:31 final size:31
Alignment explanation
Indices: 7762780--7762853 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
7762770 TTAGGGTATC
* *
7762780 ATTTAAGGGTTTTGAGATTTTAAAGTTTTGG
1 ATTTTAGGGTTTTGAGATTTTAAAGTTTTGA
*
7762811 GTTTTAGGGTTTTG-GATTTTAAAGTTTTGAA
1 ATTTTAGGGTTTTGAGATTTTAAAGTTTTG-A
*
7762842 ATTTTAAGGTTT
1 ATTTTAGGGTTT
7762854 CAAGGGTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 15 0.41
31 22 0.59
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (31 bp):
ATTTTAGGGTTTTGAGATTTTAAAGTTTTGA
Found at i:7762876 original size:15 final size:15
Alignment explanation
Indices: 7762856--7762895 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7762846 TAAGGTTTCA
7762856 AGGGTTTATG-GTTTT
1 AGGGTTT-TGAGTTTT
7762871 AGGGTTTTGAGTTTT
1 AGGGTTTTGAGTTTT
*
7762886 AAGGTTTTGA
1 AGGGTTTTGA
7762896 AATTTAAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 2 0.09
15 21 0.91
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (15 bp):
AGGGTTTTGAGTTTT
Found at i:7762901 original size:15 final size:15
Alignment explanation
Indices: 7762868--7762907 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
7762858 GGTTTATGGT
* **
7762868 TTTAGGGTTTTGAGT
1 TTTAAGGTTTTGAAA
7762883 TTTAAGGTTTTGAAA
1 TTTAAGGTTTTGAAA
7762898 TTTAAGGTTT
1 TTTAAGGTTT
7762908 CGATTTTGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.53
Consensus pattern (15 bp):
TTTAAGGTTTTGAAA
Found at i:7764484 original size:16 final size:15
Alignment explanation
Indices: 7764440--7764488 Score: 57
Period size: 14 Copynumber: 3.3 Consensus size: 15
7764430 GCCTTCTCTG
7764440 TTATGTTGTGGTTTT
1 TTATGTTGTGGTTTT
*
7764455 TGT-T-TTGTGATTTT
1 T-TATGTTGTGGTTTT
7764469 TTATGTTGTGGGTTTT
1 TTATGTTGT-GGTTTT
7764485 TTAT
1 TTAT
7764489 TTTATGATTG
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
13 1 0.04
14 11 0.39
15 6 0.21
16 10 0.36
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.67
Consensus pattern (15 bp):
TTATGTTGTGGTTTT
Found at i:7764497 original size:31 final size:29
Alignment explanation
Indices: 7764440--7764497 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 29
7764430 GCCTTCTCTG
* *
7764440 TTATGTTGTGGTTTTTGTTTTGTGATTTT
1 TTATGTTGTGGTTTTTATTTTATGATTTT
7764469 TTATGTTGTGGGTTTTTTATTTTATGATT
1 TTATGTTGT-GG-TTTTTATTTTATGATT
7764498 GTTGTGGGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 9 0.36
30 2 0.08
31 14 0.56
ACGTcount: A:0.10, C:0.00, G:0.22, T:0.67
Consensus pattern (29 bp):
TTATGTTGTGGTTTTTATTTTATGATTTT
Found at i:7764500 original size:25 final size:26
Alignment explanation
Indices: 7764472--7764534 Score: 85
Period size: 25 Copynumber: 2.4 Consensus size: 26
7764462 TGATTTTTTA
7764472 TGTTGTGGGTTTTTTATT-TTATG-AT
1 TGTTGTGGGTTTTTT-TTGTTATGAAT
*
7764497 TGTTGTGGGTTTTTTTTGTTTTGTAAT
1 TGTTGTGGGTTTTTTTTGTTATG-AAT
7764524 TGTTGTGGGTT
1 TGTTGTGGGTT
7764535 CTAGGTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
24 2 0.06
25 19 0.56
27 13 0.38
ACGTcount: A:0.08, C:0.00, G:0.29, T:0.63
Consensus pattern (26 bp):
TGTTGTGGGTTTTTTTTGTTATGAAT
Found at i:7766110 original size:49 final size:49
Alignment explanation
Indices: 7766053--7766150 Score: 135
Period size: 49 Copynumber: 2.0 Consensus size: 49
7766043 GAAAAGGGAT
7766053 TATTTTTGGACCAAAAATACCGTAAATAATC-TCGATTAAAAAATATCAA
1 TATTTTTGGACCAAAAATACCGTAAATAATCTTCG-TTAAAAAATATCAA
* * * * *
7766102 TATTTTTGGGCCAAAAATGCCTTAAATAATCTTTGTTAAAAATTATCAA
1 TATTTTTGGACCAAAAATACCGTAAATAATCTTCGTTAAAAAATATCAA
7766151 GGGATTATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
49 41 0.95
50 2 0.05
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (49 bp):
TATTTTTGGACCAAAAATACCGTAAATAATCTTCGTTAAAAAATATCAA
Found at i:7766638 original size:33 final size:33
Alignment explanation
Indices: 7766598--7766660 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
7766588 AACCTTAAAA
7766598 TATAAAAAGATTATTTAAAGTGTTTTCTGTTTT
1 TATAAAAAGATTATTTAAAGTGTTTTCTGTTTT
*
7766631 TATAAAAAGATTATTTAAGGTGTTTTCTGT
1 TATAAAAAGATTATTTAAAGTGTTTTCTGT
7766661 ACAGAAATGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.33, C:0.03, G:0.14, T:0.49
Consensus pattern (33 bp):
TATAAAAAGATTATTTAAAGTGTTTTCTGTTTT
Found at i:7767352 original size:15 final size:15
Alignment explanation
Indices: 7767332--7767370 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
7767322 TATAGAATAA
7767332 TATTTTTTGTTATAT
1 TATTTTTTGTTATAT
*
7767347 TATTTTTAGTTATAT
1 TATTTTTTGTTATAT
*
7767362 TATTATTTG
1 TATTTTTTG
7767371 ATGTCAAATA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (15 bp):
TATTTTTTGTTATAT
Found at i:7773020 original size:62 final size:61
Alignment explanation
Indices: 7772952--7773185 Score: 207
Period size: 62 Copynumber: 3.8 Consensus size: 61
7772942 CTAAAAATGC
*
7772952 CTTCAATAATCCCTTTC-ATTTTTTATGATGAGATTATTAAAGGTGTTTTTAACCAAAAACG
1 CTTCAATAATCCCTTTCAATTTTTTATGAGGAGATTATTAAAGGTGTTTTTAA-CAAAAACG
* * *
7773013 CTTTCAATAATCCCATTCAATTTTTTA-G-GGAGGATTATTAAAGGCGTTTTTTGTAAAAAAATA
1 C-TTCAATAATCCCTTTCAATTTTTTATGAGGA-GATTATTAAA-G-GTGTTTT-TAACAAAA-A
7773076 C-
60 CG
* * * **
7773077 CTTCAATAATCCCTTT-TATTTTTTATGAGGGGATTATTGAAGGCATTTTT--CAATAAACAG
1 CTTCAATAATCCCTTTCAATTTTTTATGAGGAGATTATTAAAGGTGTTTTTAACAA-AAAC-G
* * *
7773137 CTTCAATAATCTCC-TTCAATTTTTTATAAGG-GATTATTGAAGATGTTTT
1 CTTCAATAATC-CCTTTCAATTTTTTATGAGGAGATTATTAAAGGTGTTTT
7773186 AGGCAAAAAA
Statistics
Matches: 143, Mismatches: 16, Indels: 29
0.76 0.09 0.15
Matches are distributed among these distances:
58 4 0.03
59 2 0.01
60 29 0.20
61 22 0.15
62 35 0.24
63 33 0.23
64 13 0.09
65 5 0.03
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.42
Consensus pattern (61 bp):
CTTCAATAATCCCTTTCAATTTTTTATGAGGAGATTATTAAAGGTGTTTTTAACAAAAACG
Found at i:7773057 original size:138 final size:139
Alignment explanation
Indices: 7772805--7773060 Score: 326
Period size: 138 Copynumber: 1.8 Consensus size: 139
7772795 ATTTCAGGTG
* *
7772805 AAAAATACATTCAATAATCCTTTTAAATTTTTTAGAGAGGATTATTGAAGGTATTTTCTACAAAA
1 AAAAATACATTCAATAATCCCTTTAAATTTTTTAGAGAGGATTATTAAAGGTATTTTCTACAAAA
*
7772870 AAACACCTTCAATAATCTCCTCCAATTTTTTAGAGGGGATTATTGAAGGCGTTATTGATGGCATT
66 AAACACCTTCAATAATCTCCTCCAATTTTTTAGAGGGGATTATTAAAGGCGTTATTGATGGCATT
7772935 TTTTTGGCT
131 TTTTTGGCT
* * * *
7772944 AAAAATGCCTTCAATAATCCCTTT-CATTTTTTATGATGA-GATTATTAAAGGTGTTTT-TA-AC
1 AAAAATACATTCAATAATCCCTTTAAATTTTTTA-GA-GAGGATTATTAAAGGTATTTTCTACA-
* * * *
7773005 CAAAAACGCTTTCAATAATC-CCATTCAATTTTTTAG-GGAGGATTATTAAAGGCGTT
63 AAAAAACACCTTCAATAATCTCC-TCCAATTTTTTAGAGG-GGATTATTAAAGGCGTT
7773061 TTTTGTAAAA
Statistics
Matches: 101, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
137 5 0.05
138 55 0.54
139 39 0.39
140 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.39
Consensus pattern (139 bp):
AAAAATACATTCAATAATCCCTTTAAATTTTTTAGAGAGGATTATTAAAGGTATTTTCTACAAAA
AAACACCTTCAATAATCTCCTCCAATTTTTTAGAGGGGATTATTAAAGGCGTTATTGATGGCATT
TTTTTGGCT
Found at i:7773210 original size:62 final size:61
Alignment explanation
Indices: 7772952--7773178 Score: 180
Period size: 63 Copynumber: 3.7 Consensus size: 61
7772942 CTAAAAATGC
* * * ** *
7772952 CTTCAATAATC-CCTTTC-ATTTTTTATGATGAGATTATTAAAGGTGTTTTTAACCAAAAAC-G
1 CTTCAATAATCTCC-TTCAATTTTTTATGAAGGGATTATTGAAGGCATTTTT--CAAAAAACAG
* * * * * *
7773013 CTTTCAATAATC-CCATTCAATTTTTTAGGGA-GGATTATTAAAGGCGTTTTTTGTAAAAAAATA
1 C-TTCAATAATCTCC-TTCAATTTTTTATGAAGGGATTATTGAAGGC--ATTTT-TCAAAAAACA
*
7773076 C
61 G
** * *
7773077 CTTCAATAATC-CCTTTTATTTTTTATGAGGGGATTATTGAAGGCATTTTTCAATAAACAG
1 CTTCAATAATCTCCTTCAATTTTTTATGAAGGGATTATTGAAGGCATTTTTCAAAAAACAG
7773137 CTTCAATAATCTCCTTCAATTTTTTAT-AAGGGATTATTGAAG
1 CTTCAATAATCTCCTTCAATTTTTTATGAAGGGATTATTGAAG
7773179 ATGTTTTAGG
Statistics
Matches: 133, Mismatches: 25, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
60 32 0.24
61 18 0.14
62 38 0.29
63 39 0.29
64 5 0.04
65 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (61 bp):
CTTCAATAATCTCCTTCAATTTTTTATGAAGGGATTATTGAAGGCATTTTTCAAAAAACAG
Found at i:7773772 original size:62 final size:61
Alignment explanation
Indices: 7773691--7773875 Score: 165
Period size: 64 Copynumber: 3.0 Consensus size: 61
7773681 GCGTTTCTGG
* * * *
7773691 CAAAAAATACCTTTAATAATCGCTTTTATTTTTTATGATAGGATTATTCAAAGCATTGTCTA
1 CAAAAAACACATTCAATAATC-CTTTTATTTTTTATGAAAGGATTATTCAAAGCATTGTCTA
* * * * * * *
7773753 CCAAAAACACATTCAATAATCCTTTATCTATTTTTTGTGAGAGGATTATTCAACGTATTTTCTG
1 CAAAAAACACATTCAATAATCC-TT-T-TATTTTTTATGAAAGGATTATTCAAAGCATTGTCTA
* * * * *
7773817 TAAAAAACGCCTTCAATAATCACTCCTTATTTTTTA-GAAAGGATTATTCAAAGCGTTGT
1 CAAAAAACACATTCAATAATC-CT-TTTATTTTTTATGAAAGGATTATTCAAAGCATTGT
7773876 AGTCGATAAA
Statistics
Matches: 97, Mismatches: 21, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
61 1 0.01
62 37 0.38
63 9 0.09
64 49 0.51
65 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (61 bp):
CAAAAAACACATTCAATAATCCTTTTATTTTTTATGAAAGGATTATTCAAAGCATTGTCTA
Found at i:7776049 original size:23 final size:23
Alignment explanation
Indices: 7776023--7776090 Score: 66
Period size: 23 Copynumber: 3.0 Consensus size: 23
7776013 TAATTAAATT
* *
7776023 AAATGAATTTATTTATAAATATA
1 AAATAAATATATTTATAAATATA
*
7776046 AAATAAATATATTTATGAATAT-
1 AAATAAATATATTTATAAATATA
* * **
7776068 ATATATATATATAAATAAATATA
1 AAATAAATATATTTATAAATATA
7776091 TGCATAAATA
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
22 17 0.47
23 19 0.53
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (23 bp):
AAATAAATATATTTATAAATATA
Found at i:7776089 original size:16 final size:16
Alignment explanation
Indices: 7776041--7776101 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
7776031 TTATTTATAA
7776041 ATATA-AAATAAATAT
1 ATATATAAATAAATAT
* *
7776056 ATTTATGAATATATATAT
1 ATATAT-AA-ATAAATAT
7776074 ATATATAAATAAATAT
1 ATATATAAATAAATAT
**
7776090 ATGCATAAATAA
1 ATATATAAATAA
7776102 TAAATAAACC
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
15 4 0.11
16 17 0.46
17 4 0.11
18 12 0.32
ACGTcount: A:0.57, C:0.02, G:0.03, T:0.38
Consensus pattern (16 bp):
ATATATAAATAAATAT
Found at i:7777697 original size:18 final size:18
Alignment explanation
Indices: 7777674--7777719 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7777664 ATGGAAGCCC
* *
7777674 AAAAAGAATAAGTTTGAT
1 AAAAAGAAAAAATTTGAT
7777692 AAAAAGAAAAAATTTG-T
1 AAAAAGAAAAAATTTGAT
*
7777709 TAAAAGAAAAA
1 AAAAAGAAAAA
7777720 CTTCTAAGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 11 0.44
18 14 0.56
ACGTcount: A:0.65, C:0.00, G:0.13, T:0.22
Consensus pattern (18 bp):
AAAAAGAAAAAATTTGAT
Found at i:7780239 original size:19 final size:18
Alignment explanation
Indices: 7780212--7780253 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 18
7780202 TGATCGTAGG
7780212 TTTTTTTTTTTCATTTTA
1 TTTTTTTTTTTCATTTTA
*
7780230 TTTTTCTTTTTTGATTTTA
1 TTTTT-TTTTTTCATTTTA
7780249 TTTTT
1 TTTTT
7780254 AACAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.10, C:0.05, G:0.02, T:0.83
Consensus pattern (18 bp):
TTTTTTTTTTTCATTTTA
Found at i:7780961 original size:22 final size:23
Alignment explanation
Indices: 7780936--7780990 Score: 78
Period size: 22 Copynumber: 2.4 Consensus size: 23
7780926 TTTATTTTCC
7780936 TTGTATATATTTACTTAT-TTAG
1 TTGTATATATTTACTTATATTAG
*
7780958 TTGT-TCATATTTACTTTTATTAG
1 TTGTAT-ATATTTACTTATATTAG
7780981 TTGTATATAT
1 TTGTATATAT
7780991 ATATATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 1 0.03
22 15 0.52
23 12 0.41
24 1 0.03
ACGTcount: A:0.25, C:0.05, G:0.09, T:0.60
Consensus pattern (23 bp):
TTGTATATATTTACTTATATTAG
Found at i:7783614 original size:23 final size:21
Alignment explanation
Indices: 7783583--7783631 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 21
7783573 CATTTCCATG
* *
7783583 CATTTGCATCACACTTATTCATT
1 CATTAGCATAACA-TTA-TCATT
7783606 CATTAGCATAACATTATCATT
1 CATTAGCATAACATTATCATT
*
7783627 AATTA
1 CATTA
7783632 TGGTACTAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 9 0.39
22 3 0.13
23 11 0.48
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (21 bp):
CATTAGCATAACATTATCATT
Found at i:7792083 original size:238 final size:236
Alignment explanation
Indices: 7791543--7792100 Score: 647
Period size: 238 Copynumber: 2.3 Consensus size: 236
7791533 TAATCTTGAT
** * *
7791543 TTAGTCCAGGTCATTTCTTATAATTCATGGTTCATCCCAGTCATTTATTTTTTACCTCAACTTGG
1 TTAGTCCAAATCATTTCTTATGATTCATGGTTCATCCCAGTCATTTATTTTTTACCTCAACTCGG
* * ** * *
7791608 TCTTAGTCATTTTATTTTAACTTGTGGTTTCGTCCCAGTCACTTGATCTTAGCTCAGTCCAAATC
66 TCCTAGTCACTTTATTTTAACTCATGGTTTCGTCCCAATCACTTGATCTTAGCTCAATCCAAATC
* * *
7791673 ATTTCTTATAATTCATGGTTCTGTCCCAATCATTTATTTTAACATCGATTCAGTCTTGGTCACTT
131 ATTTCTTATAATTCATGGTTCTGTCCCAATCATTTATTTCAACATCGACTCAGTCCTGGTCACTT
* * *
7791738 TATTTTGACTCGTGGTTCCTTCTTGGTCACTTAATCTTAGC
196 TATTTTGACTAGTGGTTCCATCTCGGTCACTTAATCTTAGC
* * ** *
7791779 TCAGTCCAAATCATTTTTTATGATTGGTGGTTCTGTCCC-GATCATTTATTTTTTACCT-AGACT
1 TTAGTCCAAATCATTTCTTATGATTCATGGTTC-ATCCCAG-TCATTTATTTTTTACCTCA-ACT
* * *
7791842 CGGTCCTAGTCACTTTATTTTGACTCATGGCTTT-GTCTCAATCACTTGATCTTGGCTCAATCCA
63 CGGTCCTAGTCACTTTATTTTAACTCATGG-TTTCGTCCCAATCACTTGATCTTAGCTCAATCCA
* * * * * *
7791906 GATCATTGT-TTATGATTCGTGGTTCTGTCCTAATCATTTATTCTCGACCTCGACTCAGTCCTGG
127 AATCATT-TCTTATAATTCATGGTTCTGTCCCAATCATTTATT-TCAACATCGACTCAGTCCTGG
** * *
7791970 TTGCTTTATTTTGACTAGTGGTTTCATCTCGGTCACTTGATCTTAGC
190 TCACTTTATTTTGACTAGTGGTTCCATCTCGGTCACTTAATCTTAGC
* * ** **
7792017 TTAGTCCATATCATTACTTATGATTCATGGTTTCATCCCAGTCATTTATTTTCGATTTCAACTCG
1 TTAGTCCAAATCATTTCTTATGATTCATGG-TTCATCCCAGTCATTTATTTTTTACCTCAACTCG
*
7792082 GTCCTGGTCACTTTTATTT
65 GTCCTAGTCAC-TTTATTT
7792101 ATTTTTTACC
Statistics
Matches: 266, Mismatches: 46, Indels: 17
0.81 0.14 0.05
Matches are distributed among these distances:
236 28 0.11
237 110 0.41
238 116 0.44
239 12 0.05
ACGTcount: A:0.19, C:0.22, G:0.15, T:0.44
Consensus pattern (236 bp):
TTAGTCCAAATCATTTCTTATGATTCATGGTTCATCCCAGTCATTTATTTTTTACCTCAACTCGG
TCCTAGTCACTTTATTTTAACTCATGGTTTCGTCCCAATCACTTGATCTTAGCTCAATCCAAATC
ATTTCTTATAATTCATGGTTCTGTCCCAATCATTTATTTCAACATCGACTCAGTCCTGGTCACTT
TATTTTGACTAGTGGTTCCATCTCGGTCACTTAATCTTAGC
Found at i:7792086 original size:119 final size:119
Alignment explanation
Indices: 7791553--7792100 Score: 518
Period size: 119 Copynumber: 4.6 Consensus size: 119
7791543 TTAGTCCAGG
* * ** * * *
7791553 TCATTTCTTATAATTCATGGTTC-ATCCCAGTCATTTATTTTTTACCTCAACTTGGTCTTAGTCA
1 TCATTTCTTATGATTCATGGTTCTGTCCCAGTCATTTATTTTCGACCTCAACTCGGTCCTGGTCA
* * * *
7791617 TTTTATTTTAACTTGTGGTTTCGTCCCAGTCACTTGATCTTAGCTCAGTCCAAA
66 CTTTATTTTGACTAGTGGTTTCGTCTCAGTCACTTGATCTTAGCTCAGTCCAAA
* * * * * * * *
7791671 TCATTTCTTATAATTCATGGTTCTGTCCCAATCATTTATTTT-AACATCGATTCAGTCTTGGTCA
1 TCATTTCTTATGATTCATGGTTCTGTCCCAGTCATTTATTTTCGACCTCAACTCGGTCCTGGTCA
* * * ** *
7791735 CTTTATTTTGACTCGTGGTTCCTTCTTGGTCACTTAATCTTAGCTCAGTCCAAA
66 CTTTATTTTGACTAGTGGTTTCGTCTCAGTCACTTGATCTTAGCTCAGTCCAAA
* ** ** *
7791789 TCATTTTTTATGATTGGTGGTTCTGTCCC-GATCATTTATTTTTTACCT-AGACTCGGTCCTAGT
1 TCATTTCTTATGATTCATGGTTCTGTCCCAG-TCATTTATTTTCGACCTCA-ACTCGGTCCTGGT
* * * *
7791852 CACTTTATTTTGACTCA-TGGCTTT-GTCTCAATCACTTGATCTTGGCTCAATCCAGA
64 CACTTTATTTTGACT-AGTGG-TTTCGTCTCAGTCACTTGATCTTAGCTCAGTCCAAA
* * * * * * *
7791908 TCATTGT-TTATGATTCGTGGTTCTGTCCTAATCATTTATTCTCGACCTCGACTCAGTCCTGGTT
1 TCATT-TCTTATGATTCATGGTTCTGTCCCAGTCATTTATTTTCGACCTCAACTCGGTCCTGGTC
* * * * *
7791972 GCTTTATTTTGACTAGTGGTTTCATCTCGGTCACTTGATCTTAGCTTAGTCCATA
65 ACTTTATTTTGACTAGTGGTTTCGTCTCAGTCACTTGATCTTAGCTCAGTCCAAA
* * **
7792027 TCATTACTTATGATTCATGGTT-TCATCCCAGTCATTTATTTTCGATTTCAACTCGGTCCTGGTC
1 TCATTTCTTATGATTCATGGTTCT-GTCCCAGTCATTTATTTTCGACCTCAACTCGGTCCTGGTC
7792091 ACTTTTATTT
65 AC-TTTATTT
7792101 ATTTTTTACC
Statistics
Matches: 346, Mismatches: 70, Indels: 26
0.78 0.16 0.06
Matches are distributed among these distances:
118 124 0.36
119 212 0.61
120 10 0.03
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.45
Consensus pattern (119 bp):
TCATTTCTTATGATTCATGGTTCTGTCCCAGTCATTTATTTTCGACCTCAACTCGGTCCTGGTCA
CTTTATTTTGACTAGTGGTTTCGTCTCAGTCACTTGATCTTAGCTCAGTCCAAA
Found at i:7792575 original size:3 final size:3
Alignment explanation
Indices: 7792567--7792621 Score: 67
Period size: 3 Copynumber: 18.7 Consensus size: 3
7792557 AGAAGTTTAT
* * * *
7792567 TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TCA TCA TCA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7792614 TTA TTA TT
1 TTA TTA TT
7792622 TTTTTTCATT
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 47 0.96
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:7792676 original size:22 final size:21
Alignment explanation
Indices: 7792625--7792678 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 21
7792615 TATTATTTTT
*
7792625 TTTCATTTTTTTCTTTTTTGA
1 TTTCATTTTTTTCTTTATTGA
* * *
7792646 GTTCCTTTTCTTTCTTTATTGC
1 TTTCATTTT-TTTCTTTATTGA
7792668 TTTC-TTTTTTT
1 TTTCATTTTTTT
7792679 AATCCAACTC
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
20 3 0.11
21 11 0.41
22 13 0.48
ACGTcount: A:0.06, C:0.15, G:0.06, T:0.74
Consensus pattern (21 bp):
TTTCATTTTTTTCTTTATTGA
Found at i:7797453 original size:25 final size:25
Alignment explanation
Indices: 7797400--7797453 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
7797390 GGTAGCTGTC
*
7797400 AAAATCAATGAAATGATAGCCCAAC
1 AAAATCAATGAAATGATAGCCCAAA
* *
7797425 AAAATTAATGAAATGATAGCCTAAA
1 AAAATCAATGAAATGATAGCCCAAA
7797450 AAAA
1 AAAA
7797454 GATTATTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.57, C:0.13, G:0.11, T:0.19
Consensus pattern (25 bp):
AAAATCAATGAAATGATAGCCCAAA
Found at i:7802650 original size:207 final size:207
Alignment explanation
Indices: 7802260--7802637 Score: 612
Period size: 207 Copynumber: 1.8 Consensus size: 207
7802250 TATGATGGAA
*
7802260 GAGCAAAAACCATGAAGCAAAGGAACAAAAATGGGAGCTTTATGGGGGGCCGAACAGCTGCTGCC
1 GAGCAAAAACCATGAAGCAAAGGAACAAAAATGGGAGCTTTATGGGGGGCCAAACAGCTGCTGCC
* * * *
7802325 ATGAGAGGAAACAGGGGTTGTTCGATAGCCTAAGACGATGCTAAAAATGCAACCATAAAATGAAA
66 ATGAGAGGAAACAGGGGCTGTTCGACAGCCCAAGAAGATGCTAAAAATGCAACCATAAAATGAAA
* * *
7802390 GCAAAGATAAAGTAAATAGAGCTTGGAACTTTATTAACAAACATCAAACATAAAAAATTTAGAAA
131 GCAAAGACAAAGCAAATAGAGCTTGGAACTTTACTAACAAACATCAAACATAAAAAATTTAGAAA
7802455 TGCATGATGAGG
196 TGCATGATGAGG
* * * *
7802467 GAGCAAGAACCATGGAGCAAAGGAACCAAAATGGGAGCTTTATGGGGGGCTAAACAGCTGCTGCC
1 GAGCAAAAACCATGAAGCAAAGGAACAAAAATGGGAGCTTTATGGGGGGCCAAACAGCTGCTGCC
* *
7802532 ATGGGAGGAAACAGGGGCTGTTCGACAGCCCAAGAAGATGCTGAAAATGCAACCATAAAATGAAA
66 ATGAGAGGAAACAGGGGCTGTTCGACAGCCCAAGAAGATGCTAAAAATGCAACCATAAAATGAAA
* *
7802597 GCAAAGGCAAAGCAAATAGAGCTTGGAACTTTACTACCAAA
131 GCAAAGACAAAGCAAATAGAGCTTGGAACTTTACTAACAAA
7802638 TATTAGACAT
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
207 155 1.00
ACGTcount: A:0.42, C:0.16, G:0.25, T:0.17
Consensus pattern (207 bp):
GAGCAAAAACCATGAAGCAAAGGAACAAAAATGGGAGCTTTATGGGGGGCCAAACAGCTGCTGCC
ATGAGAGGAAACAGGGGCTGTTCGACAGCCCAAGAAGATGCTAAAAATGCAACCATAAAATGAAA
GCAAAGACAAAGCAAATAGAGCTTGGAACTTTACTAACAAACATCAAACATAAAAAATTTAGAAA
TGCATGATGAGG
Found at i:7803206 original size:145 final size:143
Alignment explanation
Indices: 7802913--7803454 Score: 497
Period size: 145 Copynumber: 3.7 Consensus size: 143
7802903 TTAAAAAACT
* * * *
7802913 AAAAATCATAAAATATTATAAGATTATGATCTAGAAAGTTTTATGAAATTTCGAGCTCAGAAAGG
1 AAAAATCATAAAATATTATAAAACTAGGATCTA-AAAGTTTCATGAAATTTCGAGCTCAGAAAGG
* * * ** *
7802978 CTAGATTACGAAAATACCCCTATAAGGGTATTTTGGTAATTTCATACTTT-TCAGGGTACTGTTG
65 CCAAATTACGAAAATACCCCTATAAGGGTA-TTTGGTAATTTCACACTTTCTC-GGGTACTACTA
*
7803042 TAATTTTAAATGCATC
128 TGATTTTAAATGCATC
* * * *
7803058 AAAAATCATGAAATATTATAAAACTAGGATTTCAAAAGCTTCATGACATTTCGAGCTCAGAAAGG
1 AAAAATCATAAAATATTATAAAACTAGGATCT-AAAAGTTTCATGAAATTTCGAGCTCAGAAAGG
* *
7803123 CCAAATTATGAAAATATCCCTCA-AAGGGTATATTGGTAATTTCACA-TTTCTCGGGATACTACT
65 CCAAATTACGAAAATACCCCT-ATAAGGGTAT-TTGGTAATTTCACACTTTCTCGGG-TACTACT
** * *
7803186 ATGATTCCAAACT-TACC
127 ATGATTTTAAA-TGCATC
* * * * * *
7803203 AAAAATCATAAAATGTTACAAAAGT-GAGATCTGAAAAGTTTCACGAAATTCCGAGCT-TGAAAA
1 AAAAATCATAAAATATTATAAAACTAG-GATCT-AAAAGTTTCATGAAATTTCGAGCTCAG-AAA
* * *
7803266 GGCCAAATTACAAAAATACCCCTATAAGGATATTTGGATAATTTCACACTTTCTGGGGTACTACT
63 GGCCAAATTACGAAAATACCCCTATAAGGGTATTTGG-TAATTTCACACTTTCTCGGGTACTACT
7803331 ATGATTTTAAATGCATC
127 ATGATTTTAAATGCATC
** * * * * * * * *
7803348 AAAAATCATAAAATATTATAGGATTAAGG-TCTGGAAGGTTTTACGAAAATCCAAGCTCATG-AA
1 AAAAATCATAAAATATTATAAAACT-AGGATCT-AAAAGTTTCATGAAATTTCGAGCTCA-GAAA
** *
7803411 GGTTAAATTACGAAAATACCCTTATAAGGGTATTTTGGTAATTT
63 GGCCAAATTACGAAAATACCCCTATAAGGGTA-TTTGGTAATTT
7803455 GGCCTTTCCT
Statistics
Matches: 323, Mismatches: 57, Indels: 34
0.78 0.14 0.08
Matches are distributed among these distances:
144 15 0.05
145 289 0.89
146 17 0.05
147 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (143 bp):
AAAAATCATAAAATATTATAAAACTAGGATCTAAAAGTTTCATGAAATTTCGAGCTCAGAAAGGC
CAAATTACGAAAATACCCCTATAAGGGTATTTGGTAATTTCACACTTTCTCGGGTACTACTATGA
TTTTAAATGCATC
Found at i:7819237 original size:29 final size:29
Alignment explanation
Indices: 7819199--7819263 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
7819189 TGTCTCTGGA
* *
7819199 GCAAGCACAAGTACTAGGATTCCAGAGAAG
1 GCAAG-ACAAGTACTAGAAATCCAGAGAAG
*
7819229 GCAAGACAAGTACTAGAAATCCAGCGAAG
1 GCAAGACAAGTACTAGAAATCCAGAGAAG
7819258 GCAAGA
1 GCAAGA
7819264 AGAAATGATG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
29 27 0.84
30 5 0.16
ACGTcount: A:0.43, C:0.20, G:0.26, T:0.11
Consensus pattern (29 bp):
GCAAGACAAGTACTAGAAATCCAGAGAAG
Found at i:7824058 original size:30 final size:30
Alignment explanation
Indices: 7824019--7824145 Score: 100
Period size: 30 Copynumber: 4.3 Consensus size: 30
7824009 TTTTATTTGG
* *
7824019 ATAAATTTTATATTTTT-A-TTATACTCAA
1 ATAAATTTTTTATTTTTAATTTATACTAAA
* *
7824047 ATAAATTTTTTATTTTTAATTTGTATTAAA
1 ATAAATTTTTTATTTTTAATTTATACTAAA
**
7824077 ATAAA-TTTTTAAATTTAATTTATA-TCAAA
1 ATAAATTTTTTATTTTTAATTTATACT-AAA
**** * * *
7824106 ATAAATTAAAAAATTTTAATTTGTACTTAA
1 ATAAATTTTTTATTTTTAATTTATACTAAA
7824136 ATAAATTTTT
1 ATAAATTTTT
7824146 ATTATAAATA
Statistics
Matches: 77, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
28 17 0.22
29 25 0.32
30 34 0.44
31 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (30 bp):
ATAAATTTTTTATTTTTAATTTATACTAAA
Found at i:7824086 original size:29 final size:29
Alignment explanation
Indices: 7824019--7824148 Score: 104
Period size: 29 Copynumber: 4.4 Consensus size: 29
7824009 TTTTATTTGG
* *
7824019 ATAAATTTTATATTTTT-A-TTATACTCAA
1 ATAAATTTT-TATTTTTAATTTATATTAAA
*
7824047 ATAAATTTTTTATTTTTAATTTGTATTAAA
1 ATAAA-TTTTTATTTTTAATTTATATTAAA
** *
7824077 ATAAATTTTTAAATTTAATTTATATCAAA
1 ATAAATTTTTATTTTTAATTTATATTAAA
*** * *
7824106 ATAAATTAAAAAATTTTAATTTGTACTT-AA
1 ATAAATT-TTTATTTTTAATTTATA-TTAAA
7824136 ATAAATTTTTATT
1 ATAAATTTTTATT
7824149 ATAAATAAAT
Statistics
Matches: 80, Mismatches: 17, Indels: 9
0.75 0.16 0.08
Matches are distributed among these distances:
28 12 0.15
29 34 0.43
30 33 0.41
31 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (29 bp):
ATAAATTTTTATTTTTAATTTATATTAAA
Found at i:7824197 original size:23 final size:22
Alignment explanation
Indices: 7824171--7824241 Score: 55
Period size: 19 Copynumber: 3.3 Consensus size: 22
7824161 TTGTTTGTAA
7824171 TAAAAATTTATTTAAATACAAAT
1 TAAAAATTTATTT-AATACAAAT
*
7824194 T--AAA-TT-TTTATTGA-AAA-
1 TAAAAATTTATTTAAT-ACAAAT
7824211 TAAAAATTTATTTGAATACAAAT
1 TAAAAATTTATTT-AATACAAAT
7824234 TCAAAAAT
1 T-AAAAAT
7824242 AAAATTTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 17
0.66 0.04 0.30
Matches are distributed among these distances:
17 1 0.03
18 5 0.14
19 7 0.19
20 4 0.11
21 7 0.19
22 5 0.14
23 2 0.05
24 6 0.16
ACGTcount: A:0.54, C:0.04, G:0.03, T:0.39
Consensus pattern (22 bp):
TAAAAATTTATTTAATACAAAT
Found at i:7824241 original size:30 final size:28
Alignment explanation
Indices: 7824207--7824283 Score: 95
Period size: 30 Copynumber: 2.7 Consensus size: 28
7824197 ATTTTTATTG
*
7824207 AAAATAAAAATTTATTTGAATACA-AATTCA
1 AAAATAAAAATTTATTT-AA-ACACAA-TAA
*
7824237 AAAATAAAATTTTATTTAAACACAATAA
1 AAAATAAAAATTTATTTAAACACAATAA
7824265 AAAAT-AAAATTTATTTAAA
1 AAAATAAAAATTTATTTAAA
7824284 ATATAAAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 13 0.30
28 10 0.23
29 4 0.09
30 16 0.37
ACGTcount: A:0.60, C:0.05, G:0.01, T:0.34
Consensus pattern (28 bp):
AAAATAAAAATTTATTTAAACACAATAA
Found at i:7824275 original size:28 final size:27
Alignment explanation
Indices: 7824207--7824283 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 27
7824197 ATTTTTATTG
*
7824207 AAAATAAAAATTTATTTGAATACAAATTCA
1 AAAAT-AAAATTTATTT-AA-ACAAATTAA
7824237 AAAATAAAATTTTATTTAAACACAA-TAA
1 AAAATAAAA-TTTATTTAAACA-AATTAA
7824265 AAAATAAAATTTATTTAAA
1 AAAATAAAATTTATTTAAA
7824284 ATATAAAATT
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
27 10 0.23
28 14 0.32
29 8 0.18
30 12 0.27
ACGTcount: A:0.60, C:0.05, G:0.01, T:0.34
Consensus pattern (27 bp):
AAAATAAAATTTATTTAAACAAATTAA
Found at i:7824295 original size:17 final size:17
Alignment explanation
Indices: 7824262--7824300 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
7824252 TTAAACACAA
7824262 TAAAAAATAAAATTTATT
1 TAAAAAATAAAATTTA-T
*
7824280 TAAAATATAAAA-TTAT
1 TAAAAAATAAAATTTAT
7824296 TAAAA
1 TAAAA
7824301 CACTTTTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 6 0.30
17 3 0.15
18 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAAAAATAAAATTTAT
Found at i:7826004 original size:23 final size:23
Alignment explanation
Indices: 7825972--7826058 Score: 75
Period size: 23 Copynumber: 3.7 Consensus size: 23
7825962 ATTTAAAAAA
7825972 TTATAAAAATTAAAAAATATTTT
1 TTATAAAAATTAAAAAATATTTT
* * ** *
7825995 TTAAAAAAATGAAATCAGATTTT
1 TTATAAAAATTAAAAAATATTTT
* *
7826018 TCATAAAAATTCAAGAAATATTATTT
1 TTATAAAAATT-AAAAAATA-T-TTT
*
7826044 TTATAAGAATTAAAA
1 TTATAAAAATTAAAA
7826059 TATTGGGAAA
Statistics
Matches: 46, Mismatches: 15, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
23 26 0.57
24 4 0.09
25 4 0.09
26 12 0.26
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (23 bp):
TTATAAAAATTAAAAAATATTTT
Found at i:7826499 original size:20 final size:20
Alignment explanation
Indices: 7826474--7826515 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
7826464 CATTTATTCA
*
7826474 TATCGTCATACTAACAAAGT
1 TATCGTCACACTAACAAAGT
* *
7826494 TATCGTTACATTAACAAAGT
1 TATCGTCACACTAACAAAGT
7826514 TA
1 TA
7826516 ATATCACATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (20 bp):
TATCGTCACACTAACAAAGT
Found at i:7826524 original size:20 final size:20
Alignment explanation
Indices: 7826501--7826538 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7826491 AGTTATCGTT
*
7826501 ACATTAACAAAGTTAATATC
1 ACATTAACAAAGTCAATATC
*
7826521 ACATTAATAAAGTCAATA
1 ACATTAACAAAGTCAATA
7826539 CTTACATCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.13, G:0.05, T:0.29
Consensus pattern (20 bp):
ACATTAACAAAGTCAATATC
Found at i:7829968 original size:29 final size:30
Alignment explanation
Indices: 7829925--7829989 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
7829915 AATGAAATTC
7829925 AAAAA-TTTTTGAAAAATT-AAAAAAAC-A
1 AAAAATTTTTTGAAAAATTCAAAAAAACTA
* *
7829952 AAAAATTTTTTGAAAAAATTCACAAAAACTT
1 AAAAATTTTTTG-AAAAATTCAAAAAAACTA
7829983 AAAAATT
1 AAAAATT
7829990 CTAAAGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
27 5 0.16
28 6 0.19
29 7 0.22
30 7 0.22
31 7 0.22
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.29
Consensus pattern (30 bp):
AAAAATTTTTTGAAAAATTCAAAAAAACTA
Found at i:7830543 original size:40 final size:41
Alignment explanation
Indices: 7830493--7830572 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 41
7830483 TTTTAAGTTT
7830493 TTGTCAATTTTTTTGAATTTTA-AGAAAATTTTTTATTAAAA
1 TTGTCAA-TTTTTTGAATTTTATAGAAAATTTTTTATTAAAA
** **
7830534 TTGTC-ATTTTTTGGTTTTTATAGAATTTTTTTTATTAAA
1 TTGTCAATTTTTTGAATTTTATAGAAAATTTTTTATTAAA
7830573 TTTTTGAGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
39 12 0.35
40 17 0.50
41 5 0.15
ACGTcount: A:0.30, C:0.03, G:0.09, T:0.59
Consensus pattern (41 bp):
TTGTCAATTTTTTGAATTTTATAGAAAATTTTTTATTAAAA
Found at i:7830606 original size:29 final size:29
Alignment explanation
Indices: 7830570--7830652 Score: 93
Period size: 29 Copynumber: 2.9 Consensus size: 29
7830560 TTTTTTTATT
7830570 AAAT-TTTTGAGATTTTTAAAATTTTTAA
1 AAATATTTTGAGATTTTTAAAATTTTTAA
* *
7830598 AAATATTTT-ATATATTTTATAATTTTTAA
1 AAATATTTTGAGAT-TTTTAAAATTTTTAA
*
7830627 AACATATTTTG-GA-CTTTAAAATTTTT
1 AA-ATATTTTGAGATTTTTAAAATTTTT
7830653 TTTAAGAAAG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
28 18 0.39
29 20 0.43
30 8 0.17
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (29 bp):
AAATATTTTGAGATTTTTAAAATTTTTAA
Found at i:7831335 original size:20 final size:21
Alignment explanation
Indices: 7831310--7831367 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 21
7831300 AAAATTAAAA
*
7831310 TTTATAAGTTATAAACATA-T
1 TTTATAAATTATAAACATATT
*
7831330 TTTATAAATTATAAATATATT
1 TTTATAAATTATAAACATATT
* *
7831351 TTTATAATTTACAAACA
1 TTTATAAATTATAAACA
7831368 GGTCGTAATC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 17 0.53
21 15 0.47
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (21 bp):
TTTATAAATTATAAACATATT
Found at i:7833136 original size:21 final size:19
Alignment explanation
Indices: 7833083--7833136 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 19
7833073 TAAAGATTCG
7833083 GATTTTAGGGTTTTAGTTT
1 GATTTTAGGGTTTTAGTTT
7833102 GAGTTTTGAGGGTTTTAAGGTTT
1 GA-TTTT-AGGGTTTT-A-GTTT
*
7833125 GATTTTAAGGTT
1 GATTTTAGGGTT
7833137 AATAGGGTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.07
20 4 0.13
21 13 0.43
22 5 0.17
23 6 0.20
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (19 bp):
GATTTTAGGGTTTTAGTTT
Found at i:7833717 original size:18 final size:19
Alignment explanation
Indices: 7833668--7833720 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 19
7833658 ATCATGCATA
*
7833668 AATATATAAAAAAAATACTT
1 AATATAT-AAAAAAATACAT
7833688 AA-A-ATAACAAAAATA-AT
1 AATATATAA-AAAAATACAT
7833705 AATATATAAAAAAATA
1 AATATATAAAAAAATA
7833721 GAAAATTCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 5 0.17
18 17 0.59
19 5 0.17
20 2 0.07
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.25
Consensus pattern (19 bp):
AATATATAAAAAAATACAT
Found at i:7834011 original size:28 final size:28
Alignment explanation
Indices: 7833979--7834033 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
7833969 GCGTTGATCC
** *
7833979 TCTTATGCTTGAAACGTCGTCGTTTTGG
1 TCTTATGCTCAAAACGACGTCGTTTTGG
*
7834007 TCTTATGCTCAAAACGACGTTGTTTTG
1 TCTTATGCTCAAAACGACGTCGTTTTG
7834034 CTTCTATGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (28 bp):
TCTTATGCTCAAAACGACGTCGTTTTGG
Found at i:7834780 original size:23 final size:23
Alignment explanation
Indices: 7834753--7834797 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7834743 AATTAATATT
*
7834753 TTAATAATTTTGATTTTTAATTC
1 TTAATAATTTTAATTTTTAATTC
**
7834776 TTAATTTTTTTAATTTTTAATT
1 TTAATAATTTTAATTTTTAATT
7834798 AAATTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (23 bp):
TTAATAATTTTAATTTTTAATTC
Found at i:7834785 original size:16 final size:16
Alignment explanation
Indices: 7834766--7834797 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7834756 ATAATTTTGA
7834766 TTTTTAATTCTTAATT
1 TTTTTAATTCTTAATT
*
7834782 TTTTTAATTTTTAATT
1 TTTTTAATTCTTAATT
7834798 AAATTAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTAATTCTTAATT
Found at i:7835244 original size:34 final size:34
Alignment explanation
Indices: 7835206--7835282 Score: 127
Period size: 34 Copynumber: 2.3 Consensus size: 34
7835196 AATTAAGTCA
* * *
7835206 CGAATCAGAGAATAAAGAGATTGAGATTAAACCG
1 CGAATCAAAGAATAAAGAGATCGAGATTAAACAG
7835240 CGAATCAAAGAATAAAGAGATCGAGATTAAACAG
1 CGAATCAAAGAATAAAGAGATCGAGATTAAACAG
7835274 CGAATCAAA
1 CGAATCAAA
7835283 AAATGATGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.51, C:0.13, G:0.21, T:0.16
Consensus pattern (34 bp):
CGAATCAAAGAATAAAGAGATCGAGATTAAACAG
Found at i:7835606 original size:133 final size:135
Alignment explanation
Indices: 7835355--7835674 Score: 455
Period size: 133 Copynumber: 2.4 Consensus size: 135
7835345 GTCAAAGGAT
* * * *
7835355 AACAACAATCGAGATTAAACTACGATTTTGACTTAACGAGATCGAGATTGAATCGCGAATTAAAA
1 AACAACAATCGAGATTAAACTACGATTTTGAATTAAAGAGATCGGGATTGAATCACGAATTAAAA
* *
7835420 AAATAAAGAGACCAGGATCAAATCGCGAGTCAAAAAATAACGTTAACTCGGATTGGATCACAAAT
66 AAATAAAGAGACCAGGATCAAACCGCGAGTCAAAAAATAACGTTAACTCGGATTGAATCACAAAT
7835485 CAGAA
131 CAGAA
*
7835490 AACAACAATCGAGATT-AACTACGATTTTGAATTAAAGAGATCGGGATTGAATCACG-ATTCAAA
1 AACAACAATCGAGATTAAACTACGATTTTGAATTAAAGAGATCGGGATTGAATCACGAATTAAAA
** * * * * * * *
7835553 AAATAAAGAGACTGGGATTAAACCGTGAGTCAGAAAATGACGTTAACTTGGATTGAATCATAAGT
66 AAATAAAGAGACCAGGATCAAACCGCGAGTCAAAAAATAACGTTAACTCGGATTGAATCACAAAT
7835618 CAGAA
131 CAGAA
* * *
7835623 AACAAAAATCAAGATTAAACTGCGATTTTGAATTAAAGAGATCGGGATTGAA
1 AACAACAATCGAGATTAAACTACGATTTTGAATTAAAGAGATCGGGATTGAA
7835675 CTGTGAGTTA
Statistics
Matches: 165, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
133 79 0.48
134 70 0.42
135 16 0.10
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (135 bp):
AACAACAATCGAGATTAAACTACGATTTTGAATTAAAGAGATCGGGATTGAATCACGAATTAAAA
AAATAAAGAGACCAGGATCAAACCGCGAGTCAAAAAATAACGTTAACTCGGATTGAATCACAAAT
CAGAA
Found at i:7835704 original size:134 final size:133
Alignment explanation
Indices: 7835355--7835708 Score: 444
Period size: 134 Copynumber: 2.6 Consensus size: 133
7835345 GTCAAAGGAT
* * *
7835355 AACAACAATCGAGATTAAACTACGATTTTGACTTAACGAGATCGAGATTGAATCGCGAATTAAAA
1 AACAACAATCGAGATTAAACTACGATTTTGAATTAAAGAGATCGGGATTGAATCGCG-ATTAAAA
* * * *
7835420 AAATAAAGAGACCAGGATCAAATCGCGAGTCAAAAAATAACGTTAACTCGGATTGGATCACAAAT
65 AAATAAAGAGA-CGGGATTAAACCGCGAGTCAAAAAATAACGTTAACTCGGATTGAATCACAAAT
7835485 CAGAA
129 CAGAA
* *
7835490 AACAACAATCGAGATT-AACTACGATTTTGAATTAAAGAGATCGGGATTGAATCACGATTCAAAA
1 AACAACAATCGAGATTAAACTACGATTTTGAATTAAAGAGATCGGGATTGAATCGCGATTAAAAA
* * * * * *
7835554 AATAAAGAGACTGGGATTAAACCGTGAGTCAGAAAATGACGTTAACTTGGATTGAATCATAAGTC
66 AATAAAGAGAC-GGGATTAAACCGCGAGTCAAAAAATAACGTTAACTCGGATTGAATCACAAATC
7835619 AGAA
130 AGAA
* * * * *
7835623 AACAAAAATCAAGATTAAACTGCGATTTTGAATTAAAGAGATCGGGATTGAA-CTGTGAGTT-AG
1 AACAACAATCGAGATTAAACTACGATTTTGAATTAAAGAGATCGGGATTGAATC-GCGA-TTAAA
*
7835686 AGAATAAAGAGATCGGGATTAAA
64 AAAATAAAGAGA-CGGGATTAAA
7835709 TCACGAATCG
Statistics
Matches: 192, Mismatches: 22, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
132 1 0.01
133 79 0.41
134 93 0.48
135 19 0.10
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.23
Consensus pattern (133 bp):
AACAACAATCGAGATTAAACTACGATTTTGAATTAAAGAGATCGGGATTGAATCGCGATTAAAAA
AATAAAGAGACGGGATTAAACCGCGAGTCAAAAAATAACGTTAACTCGGATTGAATCACAAATCA
GAA
Found at i:7835888 original size:135 final size:135
Alignment explanation
Indices: 7835688--7835979 Score: 327
Period size: 135 Copynumber: 2.2 Consensus size: 135
7835678 TGAGTTAGAG
* * * *
7835688 AATAAAGAGATCGGGATTAAATCACGAATCGAAGAATAAAGACAATCGAGATTAAACTGTAACTT
1 AATAAAGAGATCGGGATTAAATCACGAATCAAAGAATAAAGACAATCAAGACTAAACCGTAACTT
* * **
7835753 TGAATTAAAAAGATCAGGACTAAACCGAGAGTCGAAATAATGTCAACTTAGATTGAATCACAAGT
66 TGAAATAAAAAGATCAAGACTAAACCGAGAGTCGAAATAACATCAACTTAGATTGAATCACAAGT
7835818 CA-AA
131 CAGAA
* * * * * *
7835822 CAATAAAGAGACCGGGATTAAATCATGAGTCAAAGGATAACA-ACAATTAAGACTAAACCGTGAC
1 -AATAAAGAGATCGGGATTAAATCACGAATCAAAGAATAA-AGACAATCAAGACTAAACCGTAAC
* * * * * * * *
7835886 TTTGAAATAAAGAGGTCAAGATTGAACTGCGAGTCGAAGTAACATCAACTTGGATTGAATCACAA
64 TTTGAAATAAAAAGATCAAGACTAAACCGAGAGTCGAAATAACATCAACTTAGATTGAATCACAA
*
7835951 GTTAGAA
129 GTCAGAA
*
7835958 AATAAAAACGATCGGGATTAAA
1 AATAAAGA-GATCGGGATTAAA
7835980 CCGTAAGTCA
Statistics
Matches: 129, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
135 114 0.88
136 15 0.12
ACGTcount: A:0.46, C:0.14, G:0.19, T:0.21
Consensus pattern (135 bp):
AATAAAGAGATCGGGATTAAATCACGAATCAAAGAATAAAGACAATCAAGACTAAACCGTAACTT
TGAAATAAAAAGATCAAGACTAAACCGAGAGTCGAAATAACATCAACTTAGATTGAATCACAAGT
CAGAA
Found at i:7848577 original size:21 final size:21
Alignment explanation
Indices: 7848546--7848599 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
7848536 TGAAGACTTG
7848546 GATTTTAGGGTTTT-T-GTTT
1 GATTTTAGGGTTTTATGGTTT
7848565 GAGTTTTGAGGGTTTTATGGTTT
1 GA-TTTT-AGGGTTTTATGGTTT
*
7848588 GATTTTAAGGTT
1 GATTTTAGGGTT
7848600 CAAAGGGTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
19 2 0.07
20 4 0.13
21 13 0.43
22 5 0.17
23 6 0.20
ACGTcount: A:0.15, C:0.00, G:0.30, T:0.56
Consensus pattern (21 bp):
GATTTTAGGGTTTTATGGTTT
Found at i:7849478 original size:28 final size:28
Alignment explanation
Indices: 7849436--7849498 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
7849426 TGCGTGATCC
**
7849436 TCTTATGCTTGAAAC-GACGTCGTTTTGG
1 TCTTATGCTCAAAACAG-CGTCGTTTTGG
* *
7849464 TCTTATGCTCAAAACAGCGTTGTTTTTG
1 TCTTATGCTCAAAACAGCGTCGTTTTGG
7849492 TCTTATG
1 TCTTATG
7849499 TCTTCTATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 29 0.97
29 1 0.03
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (28 bp):
TCTTATGCTCAAAACAGCGTCGTTTTGG
Found at i:7850268 original size:23 final size:23
Alignment explanation
Indices: 7850241--7850285 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7850231 AATTAATATT
*
7850241 TTAATAATTTTGATTTTTAATTC
1 TTAATAATTTTAATTTTTAATTC
**
7850264 TTAATTTTTTTAATTTTTAATT
1 TTAATAATTTTAATTTTTAATT
7850286 AAATTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (23 bp):
TTAATAATTTTAATTTTTAATTC
Found at i:7850273 original size:16 final size:16
Alignment explanation
Indices: 7850254--7850285 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7850244 ATAATTTTGA
7850254 TTTTTAATTCTTAATT
1 TTTTTAATTCTTAATT
*
7850270 TTTTTAATTTTTAATT
1 TTTTTAATTCTTAATT
7850286 AAATTAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTTTAATTCTTAATT
Found at i:7850303 original size:12 final size:12
Alignment explanation
Indices: 7850288--7850326 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
7850278 TTTTAATTAA
7850288 ATTAATATTATT
1 ATTAATATTATT
7850300 ATTAATATTATT
1 ATTAATATTATT
* *
7850312 ATCAAAATTATT
1 ATTAATATTATT
7850324 ATT
1 ATT
7850327 GATAATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTAATATTATT
Found at i:7854514 original size:20 final size:20
Alignment explanation
Indices: 7854477--7854515 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7854467 AAAAAAATAA
*
7854477 AATTTTTAGTTTGATATTTT
1 AATTTTTAGTTTCATATTTT
7854497 AATTTTTA-TTTCATTATTT
1 AATTTTTAGTTTCA-TATTT
7854516 ATTTTATTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (20 bp):
AATTTTTAGTTTCATATTTT
Found at i:7854812 original size:20 final size:19
Alignment explanation
Indices: 7854757--7854812 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
7854747 AAACTTGAAA
* *
7854757 TTTATGAATAATTAAAATT
1 TTTATAAATAATTCAAATT
7854776 TTTATAAA-ATATATCAAATT
1 TTTATAAATA-AT-TCAAATT
7854796 TTTAATAAATAATTCAA
1 TTT-ATAAATAATTCAA
7854813 TGAAATTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
18 1 0.03
19 9 0.29
20 13 0.42
21 7 0.23
22 1 0.03
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.45
Consensus pattern (19 bp):
TTTATAAATAATTCAAATT
Found at i:7854941 original size:25 final size:27
Alignment explanation
Indices: 7854899--7854956 Score: 68
Period size: 25 Copynumber: 2.2 Consensus size: 27
7854889 AATTTTTCAA
7854899 AAAAATATGAAACAATTTA-AAGAA-T
1 AAAAATATGAAACAATTTAGAAGAATT
*
7854924 AAAAATATTAAA-ATATTTATGAAGAATT
1 AAAAATATGAAACA-ATTTA-GAAGAATT
7854952 AAAAA
1 AAAAA
7854957 AACCTAAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 1 0.04
25 16 0.57
27 5 0.18
28 6 0.21
ACGTcount: A:0.64, C:0.02, G:0.07, T:0.28
Consensus pattern (27 bp):
AAAAATATGAAACAATTTAGAAGAATT
Found at i:7855252 original size:9 final size:9
Alignment explanation
Indices: 7855240--7855282 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
7855230 TATATTTCAA
7855240 AAAATTTTT
1 AAAATTTTT
7855249 AAAATTTTT
1 AAAATTTTT
*
7855258 AAAA-GTTT
1 AAAATTTTT
*
7855266 CAAATTTTT
1 AAAATTTTT
7855275 GAAAATTT
1 -AAAATTT
7855283 GAAATTGTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
8 6 0.21
9 16 0.57
10 6 0.21
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (9 bp):
AAAATTTTT
Found at i:7855272 original size:17 final size:17
Alignment explanation
Indices: 7855250--7855288 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
7855240 AAAATTTTTA
7855250 AAATTTTT-AAAAGTTTC
1 AAATTTTTGAAAA-TTTC
*
7855267 AAATTTTTGAAAATTTG
1 AAATTTTTGAAAATTTC
7855284 AAATT
1 AAATT
7855289 GTTAGAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.46
Consensus pattern (17 bp):
AAATTTTTGAAAATTTC
Found at i:7855369 original size:16 final size:16
Alignment explanation
Indices: 7855332--7855370 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
7855322 AAACTTTCAG
7855332 ATTTTTTTTTAAATTT
1 ATTTTTTTTTAAATTT
*
7855348 AGTTTTTTTT-AATTT
1 ATTTTTTTTTAAATTT
7855363 CATTTTTT
1 -ATTTTTT
7855371 AAGTTTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (16 bp):
ATTTTTTTTTAAATTT
Found at i:7855455 original size:26 final size:26
Alignment explanation
Indices: 7855406--7855454 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
7855396 TTAAGAAAAA
7855406 TTTTTATTAAAATTTTCATTTTTTGG
1 TTTTTATTAAAATTTTCATTTTTTGG
* *
7855432 TTTTTA-TAGAATTTTTATTTTTT
1 TTTTTATTAAAATTTTCATTTTTT
7855455 TTATTAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.69
Consensus pattern (26 bp):
TTTTTATTAAAATTTTCATTTTTTGG
Found at i:7855498 original size:31 final size:32
Alignment explanation
Indices: 7855463--7855530 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 32
7855453 TTTTATTAAA
7855463 ATTTTGAGATTTTTTT-TAATATTTT-AAAAAT
1 ATTTTGAGATTTTTTTATAAT-TTTTAAAAAAT
* *
7855494 ATTTT-ATATTTTTTTATAGTTTTTAAAAAAT
1 ATTTTGAGATTTTTTTATAATTTTTAAAAAAT
7855525 ATTTTG
1 ATTTTG
7855531 GACTTTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
30 13 0.41
31 19 0.59
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (32 bp):
ATTTTGAGATTTTTTTATAATTTTTAAAAAAT
Found at i:7856334 original size:19 final size:17
Alignment explanation
Indices: 7856310--7856346 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
7856300 GTTAAAATTT
7856310 TAAATATAATATAATTATA
1 TAAATAT-ATAT-ATTATA
7856329 TAAATATATATATTATA
1 TAAATATATATATTATA
7856346 T
1 T
7856347 TAATTTTGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 4 0.22
19 7 0.39
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
TAAATATATATATTATA
Found at i:7863468 original size:62 final size:61
Alignment explanation
Indices: 7863345--7863457 Score: 153
Period size: 62 Copynumber: 1.9 Consensus size: 61
7863335 ATTAGTAGAG
* *
7863345 TATACTGTTAAGTTATACTTTAATTTACAAATGACTATCAATATTTTAATTTACTATTATAA
1 TATACTGTTAAGTTATACTTTAATTTACAAAT-ACAATCAATATATTAATTTACTATTATAA
*
7863407 TATACTGTTAAGTTATACTTTAATTTA-ATAT-CAAT-AATA-ATTAATTCTACT
1 TATACTGTTAAGTTATACTTTAATTTACAAATACAATCAATATATTAATT-TACT
7863458 TTAAGTTATA
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
57 6 0.13
58 8 0.17
59 3 0.06
61 3 0.06
62 27 0.57
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (61 bp):
TATACTGTTAAGTTATACTTTAATTTACAAATACAATCAATATATTAATTTACTATTATAA
Found at i:7868491 original size:2 final size:2
Alignment explanation
Indices: 7868484--7868514 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7868474 TTGAGGAAAT
7868484 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7868515 TGCTCAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7869914 original size:18 final size:18
Alignment explanation
Indices: 7869893--7869927 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7869883 TTAGGTTATT
7869893 TGTTTATTTATTT-GTTTA
1 TGTTT-TTTATTTAGTTTA
7869911 TGTTTTTTATTTAGTTT
1 TGTTTTTTATTTAGTTT
7869928 GTTGATATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.14, C:0.00, G:0.11, T:0.74
Consensus pattern (18 bp):
TGTTTTTTATTTAGTTTA
Found at i:7870551 original size:14 final size:15
Alignment explanation
Indices: 7870517--7870583 Score: 57
Period size: 14 Copynumber: 4.5 Consensus size: 15
7870507 TAAAATTTTT
*
7870517 AAATAATATAATTAAA
1 AAATAATA-AAATAAA
7870533 AAATAA-AAAATAAA
1 AAATAATAAAATAAA
*
7870547 CAATAATAAAA-AAA
1 AAATAATAAAATAAA
* *
7870561 TAATAATCATAATAAA
1 AAATAAT-AAAATAAA
*
7870577 AATTAAT
1 AAATAAT
7870584 TAATTAAATC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
14 20 0.48
15 8 0.19
16 14 0.33
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (15 bp):
AAATAATAAAATAAA
Found at i:7870560 original size:20 final size:20
Alignment explanation
Indices: 7870537--7870578 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7870527 ATTAAAAAAT
7870537 AAAA-AATAAACAATAATAAA
1 AAAATAATAAAC-ATAATAAA
*
7870557 AAAATAATAATCATAATAAA
1 AAAATAATAAACATAATAAA
7870577 AA
1 AA
7870579 TTAATTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (20 bp):
AAAATAATAAACATAATAAA
Found at i:7874884 original size:17 final size:17
Alignment explanation
Indices: 7874864--7874897 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7874854 TTATTATGCT
7874864 TAAAAAAAACTAAAAAG
1 TAAAAAAAACTAAAAAG
*
7874881 TAAAATAAACTAAAAAG
1 TAAAAAAAACTAAAAAG
7874898 ATATTTGAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.74, C:0.06, G:0.06, T:0.15
Consensus pattern (17 bp):
TAAAAAAAACTAAAAAG
Found at i:7875822 original size:40 final size:39
Alignment explanation
Indices: 7875772--7876291 Score: 256
Period size: 40 Copynumber: 13.6 Consensus size: 39
7875762 CTGATCAGAG
* *
7875772 GAGCTTTTTAACATTTAAAGTTTGTTGCATTTAGTTAAAA
1 GAGCCTTTTAA-ATTTAAAGTTTGTTGCCTTTAGTTAAAA
* * *
7875812 GAGCC------ATTTAAAGTTTGTT-ACTTCTAGTTAGAT
1 GAGCCTTTTAAATTTAAAGTTTGTTGCCTT-TAGTTAAAA
* * * *
7875845 GAGCTTTTTAATATTTAAAGTTTTTTGCCTTTGGTTAAAT
1 GAGCCTTTTAA-ATTTAAAGTTTGTTGCCTTTAGTTAAAA
* * * * * * *
7875885 GAGCC------ATTTAAAATTCGTTGCCTCTAATCAGAG
1 GAGCCTTTTAAATTTAAAGTTTGTTGCCTTTAGTTAAAA
* * *
7875918 GAGCCTTTTAACATTTAAAATTTGTTGCATTTGGTTAAAA
1 GAGCCTTTTAA-ATTTAAAGTTTGTTGCCTTTAGTTAAAA
* ** ** * * * *
7875958 GAGCC------ATTGAAAGTTCATTATCTCTAGTCAGAG
1 GAGCCTTTTAAATTTAAAGTTTGTTGCCTTTAGTTAAAA
*
7875991 GAGCCTTTTAACATTTAAAGTTTGTTCCCTTTAGTTAAAA
1 GAGCCTTTTAA-ATTTAAAGTTTGTTGCCTTTAGTTAAAA
* *
7876031 AAGCCTTTTAACATTTAAAGTTTGTTGCCTTTAGTTAAAG
1 GAGCCTTTTAA-ATTTAAAGTTTGTTGCCTTTAGTTAAAA
* * * * * *
7876071 GAGCATTTTGAATTTAAAGTTCGTTGCCTTT-GATGAGAG
1 GAGCCTTTTAAATTTAAAGTTTGTTGCCTTTAG-TTAAAA
* * * * *
7876110 GAGCCTTTTGAATTTAAGGTTTGTT-AC-TTATGGTAAGAG
1 GAGCCTTTTAAATTTAAAGTTTGTTGCCTTTA-GTTAA-AA
* * * *
7876149 GAGCCTTTTGAATTTAAAGTTTCGTTACTTTTGGTTAAAA
1 GAGCCTTTTAAATTTAAAGTTT-GTTGCCTTTAGTTAAAA
* * * *
7876189 GAGTCTTTTGAATTTAAAGTTTCATTGCCTTTCGTTAAAA
1 GAGCCTTTTAAATTTAAAGTTT-GTTGCCTTTAGTTAAAA
* * * *
7876229 GAGCCATTTGAATTTAAAGTTTTGTTACCTTTGGTTAAAA
1 GAGCCTTTTAAATTTAAAG-TTTGTTGCCTTTAGTTAAAA
* * *
7876269 AAACCTTTTTGAATTTAAAGTTT
1 GAGCC-TTTTAAATTTAAAGTTT
7876292 CATTGGCTAT
Statistics
Matches: 364, Mismatches: 84, Indels: 64
0.71 0.16 0.12
Matches are distributed among these distances:
32 2 0.01
33 70 0.19
37 2 0.01
38 3 0.01
39 69 0.19
40 193 0.53
41 23 0.06
42 2 0.01
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (39 bp):
GAGCCTTTTAAATTTAAAGTTTGTTGCCTTTAGTTAAAA
Found at i:7875863 original size:73 final size:73
Alignment explanation
Indices: 7875744--7876041 Score: 373
Period size: 73 Copynumber: 4.1 Consensus size: 73
7875734 AACCTTTTGA
*
7875744 ATTTAAAGTTCGTTACCTCT-GATCAGAGGAGCTTTTTAACATTTAAAGTTTGTTGCATTTAGTT
1 ATTTAAAGTTCGTTACCTCTAG-TCAGAGGAGCCTTTTAACATTTAAAGTTTGTTGCATTTAGTT
7875808 AAAAGAGCC
65 AAAAGAGCC
* * * * * * * * *
7875817 ATTTAAAGTTTGTTACTTCTAGTTAGATGAGCTTTTTAATATTTAAAGTTTTTTGCCTTTGGTTA
1 ATTTAAAGTTCGTTACCTCTAGTCAGAGGAGCCTTTTAACATTTAAAGTTTGTTGCATTTAGTTA
*
7875882 AATGAGCC
66 AAAGAGCC
* * * * *
7875890 ATTTAAAATTCGTTGCCTCTAATCAGAGGAGCCTTTTAACATTTAAAATTTGTTGCATTTGGTTA
1 ATTTAAAGTTCGTTACCTCTAGTCAGAGGAGCCTTTTAACATTTAAAGTTTGTTGCATTTAGTTA
7875955 AAAGAGCC
66 AAAGAGCC
* * * * *
7875963 ATTGAAAGTTCATTATCTCTAGTCAGAGGAGCCTTTTAACATTTAAAGTTTGTTCCCTTTAGTTA
1 ATTTAAAGTTCGTTACCTCTAGTCAGAGGAGCCTTTTAACATTTAAAGTTTGTTGCATTTAGTTA
*
7876028 AAAAAGCC
66 AAAGAGCC
*
7876036 TTTTAA
1 ATTTAA
7876042 CATTTAAAGT
Statistics
Matches: 189, Mismatches: 35, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
73 188 0.99
74 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (73 bp):
ATTTAAAGTTCGTTACCTCTAGTCAGAGGAGCCTTTTAACATTTAAAGTTTGTTGCATTTAGTTA
AAAGAGCC
Found at i:7875942 original size:146 final size:146
Alignment explanation
Indices: 7875744--7876029 Score: 412
Period size: 146 Copynumber: 2.0 Consensus size: 146
7875734 AACCTTTTGA
* * * *
7875744 ATTTAAAGTTCGTTACCTCTGATCAGAGGAGCTTTTTAACATTTAAAGTTTGTTGCATTTAGTTA
1 ATTTAAAATTCGTTACCTCTAATCAGAGGAGCCTTTTAACATTTAAAATTTGTTGCATTTAGTTA
* ** * * * * * *
7875809 AAAGAGCCATTTAAAGTTTGTTA-CTTCTAGTTAGATGAGCTTTTTAATATTTAAAGTTTTTTGC
66 AAAGAGCCATTGAAAGTTCATTATC-TCTAGTCAGAGGAGCCTTTTAACATTTAAAGTTTGTTCC
*
7875873 CTTTGGTTAAATGAGCC
130 CTTTAGTTAAATGAGCC
* *
7875890 ATTTAAAATTCGTTGCCTCTAATCAGAGGAGCCTTTTAACATTTAAAATTTGTTGCATTTGGTTA
1 ATTTAAAATTCGTTACCTCTAATCAGAGGAGCCTTTTAACATTTAAAATTTGTTGCATTTAGTTA
7875955 AAAGAGCCATTGAAAGTTCATTATCTCTAGTCAGAGGAGCCTTTTAACATTTAAAGTTTGTTCCC
66 AAAGAGCCATTGAAAGTTCATTATCTCTAGTCAGAGGAGCCTTTTAACATTTAAAGTTTGTTCCC
7876020 TTTAGTTAAA
131 TTTAGTTAAA
7876030 AAAGCCTTTT
Statistics
Matches: 123, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
146 122 0.99
147 1 0.01
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.41
Consensus pattern (146 bp):
ATTTAAAATTCGTTACCTCTAATCAGAGGAGCCTTTTAACATTTAAAATTTGTTGCATTTAGTTA
AAAGAGCCATTGAAAGTTCATTATCTCTAGTCAGAGGAGCCTTTTAACATTTAAAGTTTGTTCCC
TTTAGTTAAATGAGCC
Found at i:7876097 original size:39 final size:39
Alignment explanation
Indices: 7875991--7876291 Score: 275
Period size: 40 Copynumber: 7.6 Consensus size: 39
7875981 CTAGTCAGAG
* *
7875991 GAGCCTTTTAACATTTAAAGTTTGTTCCCTTTAGTTAAAA
1 GAGCCTTTTGA-ATTTAAAGTTTGTTGCCTTTAGTTAAAA
* * *
7876031 AAGCCTTTTAACATTTAAAGTTTGTTGCCTTTAGTTAAAG
1 GAGCCTTTTGA-ATTTAAAGTTTGTTGCCTTTAGTTAAAA
* * * * *
7876071 GAGCATTTTGAATTTAAAGTTCGTTGCCTTT-GATGAGAG
1 GAGCCTTTTGAATTTAAAGTTTGTTGCCTTTAG-TTAAAA
* * * *
7876110 GAGCCTTTTGAATTTAAGGTTTGTT-AC-TTATGGTAAGAG
1 GAGCCTTTTGAATTTAAAGTTTGTTGCCTTTA-GTTAA-AA
* * *
7876149 GAGCCTTTTGAATTTAAAGTTTCGTTACTTTTGGTTAAAA
1 GAGCCTTTTGAATTTAAAGTTT-GTTGCCTTTAGTTAAAA
* * *
7876189 GAGTCTTTTGAATTTAAAGTTTCATTGCCTTTCGTTAAAA
1 GAGCCTTTTGAATTTAAAGTTT-GTTGCCTTTAGTTAAAA
* * *
7876229 GAGCCATTTGAATTTAAAGTTTTGTTACCTTTGGTTAAAA
1 GAGCCTTTTGAATTTAAAG-TTTGTTGCCTTTAGTTAAAA
* *
7876269 AAACCTTTTTGAATTTAAAGTTT
1 GAGCC-TTTTGAATTTAAAGTTT
7876292 CATTGGCTAT
Statistics
Matches: 217, Mismatches: 35, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
37 2 0.01
38 3 0.01
39 69 0.32
40 121 0.56
41 20 0.09
42 2 0.01
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.43
Consensus pattern (39 bp):
GAGCCTTTTGAATTTAAAGTTTGTTGCCTTTAGTTAAAA
Found at i:7876536 original size:3 final size:3
Alignment explanation
Indices: 7876528--7876583 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
7876518 ATTTTGTTTA
7876528 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7876576 TAT TAT TA
1 TAT TAT TA
7876584 ATCTTTAGAA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7877961 original size:3 final size:3
Alignment explanation
Indices: 7877955--7877997 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
7877945 AAAAAAATGA
7877955 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
7877998 TTTTGAATAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:7878140 original size:20 final size:20
Alignment explanation
Indices: 7878115--7878177 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
7878105 TAAAATTTTT
7878115 AAATAATATAATAAAAATAA
1 AAATAATATAATAAAAATAA
* *
7878135 AAATAATA-AACAATAATAA
1 AAATAATATAATAAAAATAA
* *
7878154 AAA-AATAATAATCACAATAA
1 AAATAAT-ATAATAAAAATAA
7878174 AAAT
1 AAAT
7878178 TTATTAATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
18 3 0.09
19 13 0.37
20 19 0.54
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (20 bp):
AAATAATATAATAAAAATAA
Found at i:7878176 original size:21 final size:21
Alignment explanation
Indices: 7878124--7878173 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 21
7878114 TAAATAATAT
*
7878124 AATAAAAATAAAAATAATAAAC
1 AATAATAA-AAAAATAATAAAC
7878146 AATAATAAAAAAATAATAATCAC
1 AATAATAAAAAAATAATAA--AC
7878169 AATAA
1 AATAA
7878174 AAATTTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 11 0.44
22 7 0.28
23 7 0.28
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.20
Consensus pattern (21 bp):
AATAATAAAAAAATAATAAAC
Found at i:7879642 original size:206 final size:206
Alignment explanation
Indices: 7879286--7880114 Score: 1055
Period size: 206 Copynumber: 4.0 Consensus size: 206
7879276 CCAAGTTTGT
* * * *
7879286 ATTTGCATCTCATGTATGATTGAGTTAATTAATGATTATAAGATAAATGGGCCGTTAAACTTAAA
1 ATTTGCATCACATGAATGATTGAGTTAATTAATAATTATAAGAT--ATAGGCCGTTAAACTTAAA
* * *
7879351 ACTTTTAGGTCTACTAGCTATCCAACGCCACTTTTCACGAAAGCACAAAAGGGTAAAGCCTGGCT
64 ACTTTTAGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCT
* * * *
7879416 CTTAGAACCCTTTTTTCTTACCAATATTCTTTTAGGTCTATTGGTTATCTAACAATTCATGATTA
129 CTTAGAACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGCTATCTAACAATTCATGACTA
7879481 TAGCAAAGAGAAG
194 TAGCAAAGAGAAG
*
7879494 ATTTGCATCACATGAATGATTAAGTTAATTAATAATTATAAGATATAGGCCGTTAAACTTAAAAC
1 ATTTGCATCACATGAATGATTGAGTTAATTAATAATTATAAGATATAGGCCGTTAAACTTAAAAC
*
7879559 TTTTAGGTCTACTAGCTATCCAACACTACTTTTCGCGAAAGCACAAAAGGGTAAACCCTGGCTCT
66 TTTTAGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCT
*
7879624 TAGAACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGCTATCTAACAATTCACGACTATA
131 TAGAACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGCTATCTAACAATTCATGACTATA
7879689 GCAAAGAGAAGG
196 GCAAAGAGAA-G
** * ** * ** * * * ** * * ** *
7879701 AACCCT-CTTTTC-TTACCGATT---TT-CTT-TTAGGTCTATTGGCTATCTA-ACAATTCACGA
1 -A-TTTGCATCACATGAATGATTGAGTTAATTAATA-AT-TATAAG--ATATAGGCCGTT-A-AA
**** *
7879758 CTATAGCAAA-GAGAAGGTCTACTAGCTATCCAACACTACTTTTCACGATAGCACAAAAGGGTAA
58 CT-TA--AAACTTTTAGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAA
* * *
7879822 ACCCTGGCTCTTAGAACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTAGTTATCTAATAAT
120 ACCCTGGCTCTTAGAACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGCTATCTAACAAT
7879887 TCATGACTATAGCAAAGAGAAG
185 TCATGACTATAGCAAAGAGAAG
* *
7879909 GTTTGCATCACATGAATGATTGAGTTAATTAATAATTATAAGATATGGGCCGTTAAACTTAAAAC
1 ATTTGCATCACATGAATGATTGAGTTAATTAATAATTATAAGATATAGGCCGTTAAACTTAAAAC
*
7879974 TTTTAGGTCTACTAGCTATCCAACACTACTTTTCGCGAAAGCACAAAAGGGTAAACCCTGGCTCT
66 TTTTAGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCT
* *
7880039 TAGAACCCTTTTTTCTTACCAACTTTCTTTTAGGTCTATTGGCTATCTAACAATTCATGACTATA
131 TAGAACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGCTATCTAACAATTCATGACTATA
*
7880104 GCACAGAGAAG
196 GCAAAGAGAAG
7880115 GTCTACTAGC
Statistics
Matches: 526, Mismatches: 74, Indels: 44
0.82 0.11 0.07
Matches are distributed among these distances:
202 2 0.00
203 3 0.01
204 6 0.01
205 6 0.01
206 286 0.54
207 15 0.03
208 56 0.11
209 135 0.26
210 6 0.01
211 6 0.01
212 3 0.01
213 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.33
Consensus pattern (206 bp):
ATTTGCATCACATGAATGATTGAGTTAATTAATAATTATAAGATATAGGCCGTTAAACTTAAAAC
TTTTAGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCT
TAGAACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGCTATCTAACAATTCATGACTATA
GCAAAGAGAAG
Found at i:7879747 original size:74 final size:74
Alignment explanation
Indices: 7879626--7879774 Score: 289
Period size: 74 Copynumber: 2.0 Consensus size: 74
7879616 CTGGCTCTTA
7879626 GAACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGCTATCTAACAATTCACGACTATAGC
1 GAACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGCTATCTAACAATTCACGACTATAGC
7879691 AAAGAGAAG
66 AAAGAGAAG
*
7879700 GAACCCTCTTTTCTTACCGATTTTCTTTTAGGTCTATTGGCTATCTAACAATTCACGACTATAGC
1 GAACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGCTATCTAACAATTCACGACTATAGC
7879765 AAAGAGAAG
66 AAAGAGAAG
7879774 G
1 G
7879775 TCTACTAGCT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
74 74 1.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (74 bp):
GAACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGCTATCTAACAATTCACGACTATAGC
AAAGAGAAG
Found at i:7880221 original size:135 final size:135
Alignment explanation
Indices: 7879978--7880251 Score: 449
Period size: 135 Copynumber: 2.0 Consensus size: 135
7879968 TAAAACTTTT
*
7879978 AGGTCTACTAGCTATCCAACACTACTTTTCGCGAAAGCACAAAAGGGTAAACCCTGGCTCTTAGA
1 AGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCTTAGA
* * *
7880043 ACCCTTTTTTCTTACCAACTTTCTTTTAGGTCTATTGGCTATCTAACAATTCATGACTATAGCAC
66 ACCCTCTTTTCTTACCAACTTTCTTTTAGGTCCATTGGCTATCTAACAATTCATGACTATAGCAA
7880108 AGAGA
131 AGAGA
* * * * *
7880113 AGGTCTACTAGCTATTCAACACTACTTTTCACGATAGCACCAATGGGTAAACCCTGGCTCTTGGA
1 AGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCTTAGA
* *
7880178 ACCCTCTTTTCTTACCAATTTTCTTTTAGGTCCATTGGTTATCTAACAATTCATGACTATAGCAA
66 ACCCTCTTTTCTTACCAACTTTCTTTTAGGTCCATTGGCTATCTAACAATTCATGACTATAGCAA
7880243 AGAGA
131 AGAGA
7880248 AGGT
1 AGGT
7880252 TTGCATCACA
Statistics
Matches: 128, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
135 128 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (135 bp):
AGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCTTAGA
ACCCTCTTTTCTTACCAACTTTCTTTTAGGTCCATTGGCTATCTAACAATTCATGACTATAGCAA
AGAGA
Found at i:7880471 original size:208 final size:206
Alignment explanation
Indices: 7880113--7880663 Score: 967
Period size: 208 Copynumber: 2.7 Consensus size: 206
7880103 AGCACAGAGA
* * * *
7880113 AGGTCTACTAGCTATTCAACACTACTTTTCACGATAGCACCAATGGGTAAACCCTGGCTCTTGGA
1 AGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCTTGGA
*
7880178 ACCCTCTTTTCTTACCAATTTTCTTTTAGGTCCATTGGTTATCTAACAATTCATGACTATAGCAA
66 ACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGTTATCTAACAATTCATGACTATAGCAA
7880243 AGAGAAGGTTTGCATCACATGTACGATTGAGTTAATTAATAATTATAAGATAAATGGCCCGTTAA
131 AGAGAAGGTTTGCATCACATGTACGATTGAGTTAATTAATAATTATAAGAT--ATGGCCCGTTAA
7880308 ACTTAAAACTGTT
194 ACTTAAAACTGTT
*
7880321 AGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCTTAGA
1 AGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCTTGGA
*
7880386 ACCCTGTTTTCTTACCAATTTTCTTTTAGGTCTATTGGTTATCTAACAATTCATGACTATAGCAA
66 ACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGTTATCTAACAATTCATGACTATAGCAA
*
7880451 AGAGAAGGTTTGCATCACATGTACGATTGAGTTAATTAATAATTATAAGATATGGGCCGTTAAAC
131 AGAGAAGGTTTGCATCACATGTACGATTGAGTTAATTAATAATTATAAGATATGGCCCGTTAAAC
*
7880516 TTAAAACTTTT
196 TTAAAACTGTT
* *
7880527 AGGTATAATAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCTTGGA
1 AGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCTTGGA
* *
7880592 ACCTTCTTTTCTTACCGATTTTCTTTTAGGTCTATTGGTTATCTAACAATTCATGACTATAGCAA
66 ACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGTTATCTAACAATTCATGACTATAGCAA
7880657 AGAGAAG
131 AGAGAAG
7880664 TGACAAACTG
Statistics
Matches: 328, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
206 154 0.47
208 174 0.53
ACGTcount: A:0.32, C:0.19, G:0.16, T:0.33
Consensus pattern (206 bp):
AGGTCTACTAGCTATCCAACACTACTTTTCACGAAAGCACAAAAGGGTAAACCCTGGCTCTTGGA
ACCCTCTTTTCTTACCAATTTTCTTTTAGGTCTATTGGTTATCTAACAATTCATGACTATAGCAA
AGAGAAGGTTTGCATCACATGTACGATTGAGTTAATTAATAATTATAAGATATGGCCCGTTAAAC
TTAAAACTGTT
Found at i:7883048 original size:27 final size:27
Alignment explanation
Indices: 7883010--7883064 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
7883000 GAGAAGAATG
7883010 TATTTGATATTATTAGCAATAATACAA
1 TATTTGATATTATTAGCAATAATACAA
7883037 TATTTGATATTATTAGCAATAATACAA
1 TATTTGATATTATTAGCAATAATACAA
7883064 T
1 T
7883065 TATAAATATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.42
Consensus pattern (27 bp):
TATTTGATATTATTAGCAATAATACAA
Found at i:7883073 original size:27 final size:27
Alignment explanation
Indices: 7883016--7883074 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
7883006 AATGTATTTG
**
7883016 ATATTATTAGCAATAATACAATATTTG
1 ATATTATTAGCAATAATACAATATTAA
7883043 ATATTATTAGCAATAATACAAT-TATAA
1 ATATTATTAGCAATAATACAATAT-TAA
7883070 ATATT
1 ATATT
7883075 TTTTCAAGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 1 0.03
27 28 0.97
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (27 bp):
ATATTATTAGCAATAATACAATATTAA
Found at i:7884029 original size:154 final size:153
Alignment explanation
Indices: 7883772--7884055 Score: 437
Period size: 154 Copynumber: 1.8 Consensus size: 153
7883762 AGTGAATGAG
* * * *
7883772 ATAAATAACTTTATGAATTTTAAAAAATAACAAATTTACCTTTAAAATTTTAGTATTTTTTATTT
1 ATAAATAACTTTATAAATTTTAAAAAATAACAAATTTACATTTAAAATTTCAGCATTTTTTATTT
*
7883837 ATTGAATAAAGATTATTTATCATTAAATATATAGTTTTTATTAGTTAGTTATTTAAATTTAAATA
66 ATTGAATAAAGATTATTTATCATTAAATATATAATTTTTATTAGTTAGTTATTTAAATTTAAATA
7883902 TAAAAGTGTTAAAAATCAATAAC
131 TAAAAGTGTTAAAAATCAATAAC
* *
7883925 ATAAAT-ACTCTTATAAATTTTTAAAAAATAACAAATTTATATTT-CAATTTCCAGCATTTTTTA
1 ATAAATAACT-TTATAAA-TTTTAAAAAATAACAAATTTACATTTAAAATTT-CAGCATTTTTTA
* * *
7883988 TTTATTTAATAAAGATTATTTGTCATTAAATATATAATTTTTATTTGTTAGTTATTTAAATTTAA
63 TTTATTGAATAAAGATTATTTATCATTAAATATATAATTTTTATTAGTTAGTTATTTAAATTTAA
7884053 ATA
128 ATA
7884056 AATTAAAAAT
Statistics
Matches: 118, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
152 3 0.03
153 17 0.14
154 98 0.83
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47
Consensus pattern (153 bp):
ATAAATAACTTTATAAATTTTAAAAAATAACAAATTTACATTTAAAATTTCAGCATTTTTTATTT
ATTGAATAAAGATTATTTATCATTAAATATATAATTTTTATTAGTTAGTTATTTAAATTTAAATA
TAAAAGTGTTAAAAATCAATAAC
Found at i:7884641 original size:153 final size:154
Alignment explanation
Indices: 7884385--7884666 Score: 442
Period size: 153 Copynumber: 1.8 Consensus size: 154
7884375 AGTGAACGAT
* * * * * *
7884385 ATAAATATCCTTATGAATTTTAAGAAATAATAAATTTACCTTTAAATTTTTAGCTTTTTTTATTT
1 ATAAATATCCTTATAAATTTTAAAAAATAACAAATTTACATTTAAATTTTTAGCATTATTTATTT
* *
7884450 ATTTTATAAAGATTATTTGTCATTAAATATAT-AGTTTTTATTAGTTAGTTATTTAAATTTAAAA
66 ATTTAATAAAGATTATTTGTCATTAAATATATAATTTTTTATTAGTTAGTTATTTAAATTTAAAA
7884514 CTAAAAGTGTTAAAAATAAATAAC
131 CTAAAAGTGTTAAAAATAAATAAC
* *
7884538 ATAAATATCCTTATAAATTTTAAAAAATAACATATTTATATTTCAAA-TTTTAGCATTATTTATT
1 ATAAATATCCTTATAAATTTTAAAAAATAACAAATTTACATTT-AAATTTTTAGCATTATTTATT
*
7884602 TATTTAATAAAGATTATTTGTCATTAAATATATAATTTTTTATTAGTTATTTATTTAAATTTAAA
65 TATTTAATAAAGATTATTTGTCATTAAATATATAATTTTTTATTAGTTAGTTATTTAAATTTAAA
7884667 TCAATTCAAA
Statistics
Matches: 116, Mismatches: 11, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
153 84 0.72
154 32 0.28
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (154 bp):
ATAAATATCCTTATAAATTTTAAAAAATAACAAATTTACATTTAAATTTTTAGCATTATTTATTT
ATTTAATAAAGATTATTTGTCATTAAATATATAATTTTTTATTAGTTAGTTATTTAAATTTAAAA
CTAAAAGTGTTAAAAATAAATAAC
Found at i:7887256 original size:22 final size:22
Alignment explanation
Indices: 7887197--7887276 Score: 62
Period size: 22 Copynumber: 3.8 Consensus size: 22
7887187 CAAATTATTG
*
7887197 ATAATTTTAT-TGTAAATTAGTA
1 ATAATTTTATAT-TAAATCAGTA
7887219 ATAA-TTTA-A--AACATCAGTA
1 ATAATTTTATATTAA-ATCAGTA
* *
7887238 ATAATTTTATATTAAATCAATG
1 ATAATTTTATATTAAATCAGTA
* *
7887260 ATAACTGTATATTAAAT
1 ATAATTTTATATTAAAT
7887277 TATAGATAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
18 2 0.04
19 10 0.21
20 4 0.09
21 5 0.11
22 24 0.51
23 2 0.04
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.42
Consensus pattern (22 bp):
ATAATTTTATATTAAATCAGTA
Found at i:7887373 original size:22 final size:22
Alignment explanation
Indices: 7887348--7887450 Score: 61
Period size: 22 Copynumber: 4.8 Consensus size: 22
7887338 TATGCTAGTG
*
7887348 ATAACATAATAATAAATACAT-A
1 ATAACATAATAGTAAATA-ATAA
* **
7887370 ATAATATTGTAGTAAATAATAA
1 ATAACATAATAGTAAATAATAA
* * **
7887392 ATAACTTAATAGTAAATTATTT
1 ATAACATAATAGTAAATAATAA
* *
7887414 AT-ACATAATTGTAAACACAT-A
1 ATAACATAATAGTAAATA-ATAA
*
7887435 ATAATAT-ATAGTAAAT
1 ATAACATAATAGTAAAT
7887451 TAAGGATAAC
Statistics
Matches: 59, Mismatches: 19, Indels: 7
0.69 0.22 0.08
Matches are distributed among these distances:
21 22 0.37
22 37 0.63
ACGTcount: A:0.54, C:0.06, G:0.05, T:0.35
Consensus pattern (22 bp):
ATAACATAATAGTAAATAATAA
Found at i:7887471 original size:21 final size:22
Alignment explanation
Indices: 7887442--7887496 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
7887432 ATAATAATAT
*
7887442 ATAGTAAATTAAGGATAACTTA
1 ATAGAAAATTAAGGATAACTTA
* *
7887464 ATA-AAAATAAATGATAACTTA
1 ATAGAAAATTAAGGATAACTTA
*
7887485 ATAGTAAATTAA
1 ATAGAAAATTAA
7887497 TAATAATTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (22 bp):
ATAGAAAATTAAGGATAACTTA
Found at i:7887498 original size:11 final size:11
Alignment explanation
Indices: 7887446--7887519 Score: 53
Period size: 11 Copynumber: 6.9 Consensus size: 11
7887436 TAATATATAG
**
7887446 TAAATTAAGGA
1 TAAATTAATAA
*
7887457 TAACTTAATAA
1 TAAATTAATAA
* *
7887468 -AAATAAATGA
1 TAAATTAATAA
* *
7887478 TAACTTAATAG
1 TAAATTAATAA
7887489 TAAATTAATAA
1 TAAATTAATAA
* *
7887500 TAATTTAATGA
1 TAAATTAATAA
7887511 TAAA-TAATA
1 TAAATTAATA
7887520 TTCAGTTTAA
Statistics
Matches: 46, Mismatches: 16, Indels: 3
0.71 0.25 0.05
Matches are distributed among these distances:
10 11 0.24
11 35 0.76
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.34
Consensus pattern (11 bp):
TAAATTAATAA
Found at i:7888257 original size:22 final size:22
Alignment explanation
Indices: 7887804--7888369 Score: 249
Period size: 22 Copynumber: 25.7 Consensus size: 22
7887794 TTAATTTATA
*
7887804 AATTTAGTAGTAAATC-ATAAAT
1 AATTTAATAGTAAATCAAT-AAT
* * *
7887826 AATTTAATAATAAATTAATGAT
1 AATTTAATAGTAAATCAATAAT
* * *
7887848 AATTTAGTAGTAAAT-AATTTAG
1 AATTTAATAGTAAATCAA-TAAT
* *
7887870 AACTTAGTAGT-AATCAATAATT
1 AATTTAATAGTAAATCAATAA-T
* * *
7887892 GAAAATTAAAAGCAAATCAAT-AT
1 --AATTTAATAGTAAATCAATAAT
* *
7887915 AACTTAATAGT-AATCATTAAT
1 AATTTAATAGTAAATCAATAAT
* * * *
7887936 AAATTAATAGTTAATCAGTGAT
1 AATTTAATAGTAAATCAATAAT
* * *
7887958 AATTTAGTATAGTAAATTAGTGAT
1 AATTTA--ATAGTAAATCAATAAT
* *
7887982 AACTTAATAGTATATCAATAAT
1 AATTTAATAGTAAATCAATAAT
*
7888004 AATTTAATAGTAAAT-AATTGAT
1 AATTTAATAGTAAATCAA-TAAT
* * *
7888026 AACTTAGTAATAAATCAATAAT
1 AATTTAATAGTAAATCAATAAT
*
7888048 AATATAATAGTAAATGCAA-AAT
1 AATTTAATAGTAAAT-CAATAAT
* * **
7888070 AACTTAATAGTAAATCTATTTT
1 AATTTAATAGTAAATCAATAAT
* * *
7888092 AGTTTAATAGTAATTAAATAAT
1 AATTTAATAGTAAATCAATAAT
* *
7888114 AAACTTAACAGTAAATC-ATAAAT
1 -AATTTAATAGTAAATCAAT-AAT
* * * *
7888137 AACTTAACAATAAATCAATGAT
1 AATTTAATAGTAAATCAATAAT
* * *
7888159 AATTTAGTAGTTAATCACTAA-
1 AATTTAATAGTAAATCAATAAT
* * * *
7888180 AACTCAAAAGTAAATCAATGAT
1 AATTTAATAGTAAATCAATAAT
** * **
7888202 AACATAGTAACAAATGC-ATAAT
1 AATTTAATAGTAAAT-CAATAAT
* * *
7888224 AGTAT-ATAGTAAATCATTAAT
1 AATTTAATAGTAAATCAATAAT
* * *
7888245 AATTTAATAGTAAATTACTGAT
1 AATTTAATAGTAAATCAATAAT
* *
7888267 AATTTAGTAGTAAATCACTAAT
1 AATTTAATAGTAAATCAATAAT
* * * *
7888289 AATGTCATATTAAATC-ATCGAT
1 AATTTAATAGTAAATCAAT-AAT
* * * *
7888311 AACTTAGTTGTAAATCAATGAT
1 AATTTAATAGTAAATCAATAAT
* * *
7888333 AATTTAGTTA-TAAATTAATGAT
1 AATTTA-ATAGTAAATCAATAAT
* *
7888355 AATTTAGTTGTAAAT
1 AATTTAATAGTAAAT
7888370 TAGTTAATTA
Statistics
Matches: 405, Mismatches: 113, Indels: 52
0.71 0.20 0.09
Matches are distributed among these distances:
20 7 0.02
21 60 0.15
22 276 0.68
23 28 0.07
24 27 0.07
25 7 0.02
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.36
Consensus pattern (22 bp):
AATTTAATAGTAAATCAATAAT
Found at i:7888452 original size:22 final size:22
Alignment explanation
Indices: 7888427--7888478 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
7888417 CAAATTAGTA
*
7888427 ATAATTTTATAATAAATTATCT
1 ATAATTTAATAATAAATTATCT
* *
7888449 ATAACTTAATAGTAAATTATCT
1 ATAATTTAATAATAAATTATCT
7888471 ATAATTTA
1 ATAATTTA
7888479 GTTGTAAGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (22 bp):
ATAATTTAATAATAAATTATCT
Found at i:7888485 original size:22 final size:22
Alignment explanation
Indices: 7888439--7888555 Score: 87
Period size: 22 Copynumber: 5.3 Consensus size: 22
7888429 AATTTTATAA
* *
7888439 TAAATTATCTATAACTTAATAG
1 TAAATTATCTATAATTTAGTAG
*
7888461 TAAATTATCTATAATTTAGTTG
1 TAAATTATCTATAATTTAGTAG
* * *
7888483 TAAGTAAAT-TATAATTTAGTAA
1 TAAAT-TATCTATAATTTAGTAG
* * *
7888505 TAAATCATCTACAACTTAGT-G
1 TAAATTATCTATAATTTAGTAG
* *
7888526 ATAAATTGAT-GATAATTTAGGAG
1 -TAAATT-ATCTATAATTTAGTAG
7888549 TAAATTA
1 TAAATTA
7888556 GTAATAAGAT
Statistics
Matches: 73, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
21 3 0.04
22 65 0.89
23 5 0.07
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (22 bp):
TAAATTATCTATAATTTAGTAG
Found at i:7888819 original size:22 final size:22
Alignment explanation
Indices: 7888794--7888845 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
7888784 CTCAGATATT
* *
7888794 GTAATTTATTAATAAATTAATA
1 GTAATTCATAAATAAATTAATA
* * *
7888816 GTAAATCATAAATAACTTAGTA
1 GTAATTCATAAATAAATTAATA
7888838 GTAATTCA
1 GTAATTCA
7888846 ATTGATAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.48, C:0.06, G:0.08, T:0.38
Consensus pattern (22 bp):
GTAATTCATAAATAAATTAATA
Found at i:7889131 original size:22 final size:22
Alignment explanation
Indices: 7889094--7889176 Score: 78
Period size: 22 Copynumber: 3.8 Consensus size: 22
7889084 AAAATTAGTT
* * *
7889094 ATAACTTTATAATAAATTA-TC
1 ATAACTTAATAGTAAATCATTC
*
7889115 AATAACTTAGTAGTAAATCATTC
1 -ATAACTTAATAGTAAATCATTC
* *
7889138 ATAACTTAATAGTAAATCTTTG
1 ATAACTTAATAGTAAATCATTC
* *
7889160 ATAATTTAATAATAAAT
1 ATAACTTAATAGTAAAT
7889177 AACTGATAAT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
22 49 0.96
23 2 0.04
ACGTcount: A:0.47, C:0.08, G:0.05, T:0.40
Consensus pattern (22 bp):
ATAACTTAATAGTAAATCATTC
Found at i:7889404 original size:11 final size:11
Alignment explanation
Indices: 7889390--7889425 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
7889380 AAATCAGTGA
7889390 TAATAATAAAT
1 TAATAATAAAT
*
7889401 TAATAATAACT
1 TAATAATAAAT
7889412 T-ATAATAAAT
1 TAATAATAAAT
7889422 TAAT
1 TAAT
7889426 TTTAGCATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (11 bp):
TAATAATAAAT
Found at i:7889511 original size:46 final size:46
Alignment explanation
Indices: 7889436--7889535 Score: 123
Period size: 46 Copynumber: 2.2 Consensus size: 46
7889426 TTTAGCATAG
* * *
7889436 TAGTAAAGTATGAATAACTTAATAATAAATTATTCATACT-T-TAA
1 TAGTAAATTATGAATAACTTAATAATAAATCATTCATAATATATAA
* *
7889480 TAGTAAATTAGTGATATAACTTAATAGTAAATCATTGATAATATATAA
1 TAGTAAATTA-TGA-ATAACTTAATAATAAATCATTCATAATATATAA
7889528 TAGTAAAT
1 TAGTAAAT
7889536 CATTGCTAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
44 9 0.19
45 3 0.06
46 23 0.49
47 1 0.02
48 11 0.23
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (46 bp):
TAGTAAATTATGAATAACTTAATAATAAATCATTCATAATATATAA
Found at i:7889518 original size:24 final size:23
Alignment explanation
Indices: 7889454--7889545 Score: 80
Period size: 24 Copynumber: 4.0 Consensus size: 23
7889444 TATGAATAAC
* * * *
7889454 TTAATAATAAATTATTCATACT-
1 TTAATAGTAAATCATTGATAATA
* *
7889476 TTAATAGTAAATTAGTGAT-ATAA
1 TTAATAGTAAATCATTGATAAT-A
7889499 CTTAATAGTAAATCATTGATAATA
1 -TTAATAGTAAATCATTGATAATA
*
7889523 TATAATAGTAAATCATTGCTAAT
1 T-TAATAGTAAATCATTGATAAT
7889546 TTAGTAATTT
Statistics
Matches: 58, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
21 1 0.02
22 16 0.28
23 1 0.02
24 38 0.66
25 2 0.03
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.40
Consensus pattern (23 bp):
TTAATAGTAAATCATTGATAATA
Found at i:7898360 original size:21 final size:20
Alignment explanation
Indices: 7898331--7898376 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
7898321 ATTTTAAATT
*
7898331 TTAATATATTTAATATTAAAA
1 TTAAAATATTTAATA-TAAAA
**
7898352 TTAAAATATTTTTTATAAAA
1 TTAAAATATTTAATATAAAA
7898372 TTAAA
1 TTAAA
7898377 GTTACATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTAAAATATTTAATATAAAA
Found at i:7898433 original size:22 final size:22
Alignment explanation
Indices: 7898398--7898466 Score: 77
Period size: 23 Copynumber: 3.0 Consensus size: 22
7898388 TTTAATGTTA
*
7898398 AAAAAATAATAAAATATAATTTT
1 AAAATATAA-AAAATATAATTTT
*
7898421 AAAATATAAAAAATAAAAGTTTT
1 AAAATATAAAAAATATAA-TTTT
7898444 -AAATATTAAAACAATATAATTTT
1 AAAATA-TAAAA-AATATAATTTT
7898467 GAGATATCTC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 13 0.32
23 21 0.52
24 6 0.15
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (22 bp):
AAAATATAAAAAATATAATTTT
Found at i:7898793 original size:22 final size:22
Alignment explanation
Indices: 7898745--7898802 Score: 63
Period size: 19 Copynumber: 2.9 Consensus size: 22
7898735 TAAATCTCAT
7898745 TAAA-TTTTTA-TATTTTAATA
1 TAAATTTTTTATTATTTTAATA
*
7898765 TATATTTTTTATTATTTTAAT-
1 TAAATTTTTTATTATTTTAATA
*
7898786 TAAA--ATTTATTATTTTA
1 TAAATTTTTTATTATTTTA
7898803 CCATTATATA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
19 12 0.36
20 3 0.09
21 9 0.27
22 9 0.27
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TAAATTTTTTATTATTTTAATA
Found at i:7901345 original size:18 final size:16
Alignment explanation
Indices: 7901322--7901368 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
7901312 TTCTTGAATG
7901322 TTTTGAATTTTTATAAAA
1 TTTTGAATTTTT-T-AAA
7901340 TTTTGAATATTTTT-AA
1 TTTTGAAT-TTTTTAAA
*
7901356 TTTTTAATTTTTT
1 TTTTGAATTTTTT
7901369 TGAAATTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
15 5 0.19
16 9 0.33
18 9 0.33
19 4 0.15
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (16 bp):
TTTTGAATTTTTTAAA
Found at i:7901369 original size:16 final size:17
Alignment explanation
Indices: 7901338--7901379 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
7901328 ATTTTTATAA
*
7901338 AATTTTGAATATTTTT-
1 AATTTTTAATATTTTTG
*
7901354 AATTTTTAATTTTTTTG
1 AATTTTTAATATTTTTG
*
7901371 AAATTTTAA
1 AATTTTTAA
7901380 AAAGAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
AATTTTTAATATTTTTG
Found at i:7901377 original size:18 final size:17
Alignment explanation
Indices: 7901322--7901377 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
7901312 TTCTTGAATG
*
7901322 TTTTGAATTTTTATAAAA
1 TTTTGAATTTTT-TTAAA
*
7901340 TTTTGAATATTTTT-AA
1 TTTTGAATTTTTTTAAA
*
7901356 TTTTTAATTTTTTTGAAA
1 TTTTGAATTTTTTT-AAA
7901374 TTTT
1 TTTT
7901378 AAAAAGAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
16 14 0.44
17 1 0.03
18 17 0.53
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTTGAATTTTTTTAAA
Found at i:7905408 original size:3 final size:3
Alignment explanation
Indices: 7905400--7905431 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7905390 CTATCCAATC
7905400 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7905432 GTAAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7906718 original size:65 final size:65
Alignment explanation
Indices: 7906628--7906867 Score: 273
Period size: 65 Copynumber: 3.7 Consensus size: 65
7906618 AGGCTGCAAG
* * * * *
7906628 TAAGTGATCGGGATTGAATCATAAGTTAAAAAAATAAATGACCTAGATTGAGCTAAAGTCAAAAA
1 TAAGTGATCGGGATTGAACCACAAGTCAAAAAAATAAATGACCTAGACTGAGCTAATGTCAAAAA
* ** * * **
7906693 TAAGTGATTGGGATTGAACCGTAAGTCAAAAAAATAAATGACTTGGACTGAGCCGATGTCAAAAA
1 TAAGTGATCGGGATTGAACCACAAGTCAAAAAAATAAATGACCTAGACTGAGCTAATGTCAAAAA
* * * ** * * **
7906758 TAAGTAACCAGGATTGAACTGCAAGTCAAAAAAATAAATAACCTAGACGGAGCTAATGTTGAAAA
1 TAAGTGATCGGGATTGAACCACAAGTCAAAAAAATAAATGACCTAGACTGAGCTAATGTCAAAAA
* *
7906823 TAAGTGATTGGGATTGAACCACAAATCAAAAAAATAAATGACCTA
1 TAAGTGATCGGGATTGAACCACAAGTCAAAAAAATAAATGACCTA
7906868 AACTAATCCG
Statistics
Matches: 143, Mismatches: 32, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
65 143 1.00
ACGTcount: A:0.46, C:0.12, G:0.19, T:0.23
Consensus pattern (65 bp):
TAAGTGATCGGGATTGAACCACAAGTCAAAAAAATAAATGACCTAGACTGAGCTAATGTCAAAAA
Found at i:7908428 original size:24 final size:22
Alignment explanation
Indices: 7908380--7908436 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
7908370 ATATTTTGCT
*
7908380 TAAAAAAAGAGAAAAAAAATAA
1 TAAAAAAAAAGAAAAAAAATAA
*
7908402 TAATACAAAAAAG-AAAAAAATGGA
1 TAA-A-AAAAAAGAAAAAAAAT-AA
7908426 TAAAAAAAAAG
1 TAAAAAAAAAG
7908437 GAAAGAAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
22 10 0.33
23 10 0.33
24 10 0.33
ACGTcount: A:0.77, C:0.02, G:0.11, T:0.11
Consensus pattern (22 bp):
TAAAAAAAAAGAAAAAAAATAA
Found at i:7909636 original size:67 final size:66
Alignment explanation
Indices: 7909550--7909782 Score: 193
Period size: 67 Copynumber: 3.5 Consensus size: 66
7909540 GTTGTTACCC
** *
7909550 TCTGACTCATGGTTTAATCTCGATCTTTTTATTCTTTGACTTGTGATTCAATCCAAATTGATGTT
1 TCTGACTCACAGTTTAATCTCGATCTTTTTATT-TTTAACTTGTGATTCAATCCAAATTGATGTT
7909615 AT
65 AT
* * * * * * * *
7909617 TCTGACTCACAGTTCAATCTTGATCTTTTTAATTTAAAATTAT-AGTTTAATCTC-AATTGTTGT
1 TCTGACTCACAGTTTAATCTCGATCTTTTTATTTTTAACTTGTGA-TTCAATC-CAAATTGATGT
7909680 TACCT
64 TA--T
* *** * *
7909685 TTTGACTCGTGGTTTAATC-CTGGTCTTTTTATTTTCTAACTTGTGATTCAATCCAAGTTGATGT
1 TCTGACTCACAGTTTAATCTC-GATCTTTTTATTTT-TAACTTGTGATTCAATCCAAATTGATGT
7909749 TAT
64 TAT
* ** *
7909752 TTTGACTTGCAGTTTAATCTTGATCTTTTTA
1 TCTGACTCACAGTTTAATCTCGATCTTTTTA
7909783 ATTGAAAATC
Statistics
Matches: 127, Mismatches: 30, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
65 1 0.01
66 22 0.17
67 55 0.43
68 28 0.22
69 20 0.16
70 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.13, T:0.49
Consensus pattern (66 bp):
TCTGACTCACAGTTTAATCTCGATCTTTTTATTTTTAACTTGTGATTCAATCCAAATTGATGTTA
T
Found at i:7909712 original size:68 final size:66
Alignment explanation
Indices: 7909605--7909913 Score: 244
Period size: 68 Copynumber: 4.6 Consensus size: 66
7909595 ATTCAATCCA
* * * * * *
7909605 AATTGATGTTATTCTGACTCACAGTTCAATCTTGATCTTTTTAATTTAAAATTATAGTTTAATCT
1 AATTGTTGTTATTTTGACTCGCGGTTTAATCCTGATCTTTTTAATTTAAAATTATAGTTTAATCT
7909670 C
66 C
* * * * * * *
7909671 AATTGTTGTTACCTTTTGACTCGTGGTTTAATCCTGGTCTTTTTATTTTCTAACTTGT-GATTCA
1 AATTGTTGTTA--TTTTGACTCGCGGTTTAATCCTGATCTTTTTAATTT-AAAATTATAG-TTTA
7909735 ATC-C
62 ATCTC
* * * * * ***
7909739 AAGTTGATGTTATTTTGACTTGCAGTTTAATCTTGATCTTTTTAATTGAAAATCGCAGTTTAATC
1 AA-TTGTTGTTATTTTGACTCGCGGTTTAATCCTGATCTTTTTAATTTAAAATTATAGTTTAATC
7909804 TC
65 TC
* ** * * *
7909806 AATTGTTGTTATTCTTTGACCCGCGGTTTAATCCCAATCTCTTTAATTCAAAATTACAGTTTAAT
1 AATTGTTGTTA-T-TTTGACTCGCGGTTTAATCCTGATCTTTTTAATTTAAAATTATAGTTTAAT
7909871 CTC
64 CTC
* * * *
7909874 AATTGTTATTATTTTTTGACTTGCGATTTAATCCCGATCT
1 AATTGTTGTTA--TTTTGACTCGCGGTTTAATCCTGATCT
7909914 CTTGATGTTT
Statistics
Matches: 191, Mismatches: 42, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
66 28 0.15
67 34 0.18
68 108 0.57
69 21 0.11
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (66 bp):
AATTGTTGTTATTTTGACTCGCGGTTTAATCCTGATCTTTTTAATTTAAAATTATAGTTTAATCT
C
Found at i:7909727 original size:135 final size:136
Alignment explanation
Indices: 7909493--7909839 Score: 443
Period size: 135 Copynumber: 2.6 Consensus size: 136
7909483 CTGACTCGTG
* * * * * *
7909493 GTTCAATCTCT-ATCTCTTTAATTTATAATCATAATTTAATCTCGATTGTTGTTACCCTCTGACT
1 GTTCAATCT-TGATCTTTTTAATTTAAAATCATAGTTTAATCTCAATTGTTGTTACCTTTTGACT
* *
7909557 CATGGTTTAAT-CTCGATCTTTTTATTCTTTGACTTGTGATTCAATCCAAATTGATGTTATTCTG
65 CGTGGTTTAATCCTCGATCTTTTTATTCTTTAACTTGTGATTCAATCCAAATTGATGTTATTCTG
7909621 ACTCACA
130 ACTCACA
*
7909628 GTTCAATCTTGATCTTTTTAATTTAAAATTATAGTTTAATCTCAATTGTTGTTACCTTTTGACTC
1 GTTCAATCTTGATCTTTTTAATTTAAAATCATAGTTTAATCTCAATTGTTGTTACCTTTTGACTC
* * *
7909693 GTGGTTTAATCCT-GGTCTTTTTATT-TTCTAACTTGTGATTCAATCCAAGTTGATGTTATTTTG
66 GTGGTTTAATCCTCGATCTTTTTATTCTT-TAACTTGTGATTCAATCCAAATTGATGTTATTCTG
**
7909756 ACTTGCA
130 ACTCACA
* * ** * *
7909763 GTTTAATCTTGATCTTTTTAATTGAAAATCGCAGTTTAATCTCAATTGTTGTTA-TTCTTTGACC
1 GTTCAATCTTGATCTTTTTAATTTAAAATCATAGTTTAATCTCAATTGTTGTTACCT-TTTGACT
*
7909827 CGCGGTTTAATCC
65 CGTGGTTTAATCC
7909840 CAATCTCTTT
Statistics
Matches: 186, Mismatches: 22, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
134 4 0.02
135 180 0.97
136 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.12, T:0.47
Consensus pattern (136 bp):
GTTCAATCTTGATCTTTTTAATTTAAAATCATAGTTTAATCTCAATTGTTGTTACCTTTTGACTC
GTGGTTTAATCCTCGATCTTTTTATTCTTTAACTTGTGATTCAATCCAAATTGATGTTATTCTGA
CTCACA
Found at i:7909940 original size:102 final size:102
Alignment explanation
Indices: 7909831--7910323 Score: 605
Period size: 102 Copynumber: 4.8 Consensus size: 102
7909821 TTGACCCGCG
* * *
7909831 GTTTAATCCCAATCTCTTTAATTCAAAATTACAGTTTAATCTCAATTGTTATTATTTTTTGACTT
1 GTTTAATCCCAATCTCTTTAATTCAAAATTACAGTTTAATCTCGATTGTTGTTATTCTTTGACTT
* *
7909896 GCGATTTAATCCCGATCTCTTGATGTTTTGACTTGCA
66 GCGATTTAATCCCGATCTCTTGATGTTTCGACTCGCA
* * * *
7909933 GTTTAATCCCATTCTTTTTAATTCAAAATCACAGTTTAATCTCGATTGTTTTTATTCTTTGACTT
1 GTTTAATCCCAATCTCTTTAATTCAAAATTACAGTTTAATCTCGATTGTTGTTATTCTTTGACTT
* * * *
7909998 GTGATTTAATCCCGATCTCTTGGTGTTTCAACTCGCG
66 GCGATTTAATCCCGATCTCTTGATGTTTCGACTCGCA
* ** * *
7910035 GTTTAATCCCAATCTCTTTAATTAAAAATCGCAGTTTAATCTCAATCGTTGTTATTCTTTGACTT
1 GTTTAATCCCAATCTCTTTAATTCAAAATTACAGTTTAATCTCGATTGTTGTTATTCTTTGACTT
* * * * * *
7910100 ACGATTTAATCTCGGTCTCTTTATGTTTTGACTCGCG
66 GCGATTTAATCCCGATCTCTTGATGTTTCGACTCGCA
* **
7910137 GTTTAATCTCAATCTCTTTAATTCAAAATTGTAGTTTAATCTCGA-TGTTGTTATTCTTTGACTT
1 GTTTAATCCCAATCTCTTTAATTCAAAATTACAGTTTAATCTCGATTGTTGTTATTCTTTGACTT
** * **
7910201 GTAATTTAATCCCGATCTTTTGATGTTTCGACTTACA
66 GCGATTTAATCCCGATCTCTTGATGTTTCGACTCGCA
* *
7910238 GTTTAATCACAATCTTTTTAATTCAAAATCGTA-A-TTTAATCTCGATTGTTGTTATTCTTTGAC
1 GTTTAATCCCAATCTCTTTAATTCAAAAT--TACAGTTTAATCTCGATTGTTGTTATTCTTTGAC
** * *
7910301 CCGCGATTTAATCTCAATCTCTT
64 TTGCGATTTAATCCCGATCTCTT
7910324 TAATTCAAAA
Statistics
Matches: 334, Mismatches: 54, Indels: 6
0.85 0.14 0.02
Matches are distributed among these distances:
101 82 0.25
102 251 0.75
103 1 0.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.46
Consensus pattern (102 bp):
GTTTAATCCCAATCTCTTTAATTCAAAATTACAGTTTAATCTCGATTGTTGTTATTCTTTGACTT
GCGATTTAATCCCGATCTCTTGATGTTTCGACTCGCA
Found at i:7910098 original size:204 final size:203
Alignment explanation
Indices: 7909827--7910323 Score: 679
Period size: 204 Copynumber: 2.4 Consensus size: 203
7909817 TTCTTTGACC
** * *
7909827 CGCGGTTTAATCCCAATCTCTTTAATTCAAAATTACAGTTTAATCTCAATTGTTATTATTTTTTG
1 CGCGGTTTAATCCCAATCTCTTTAATTCAAAATCGCAGTTTAATCTCAATTGTTGTTATTCTTTG
* * * *
7909892 ACTTGCGATTTAATCCCGATCTCTTGATGTTTTGACTTGCAGTTTAATCCCATTCTTTTTAATTC
66 ACTTGCGATTTAATCTCGATCTCTTGATGTTTTGACTCGCAGTTTAATCCCAATCTCTTTAATTC
* * *
7909957 AAAATCACAGTTTAATCTCGATTGTTTTTATTCTTTGACTTGTGATTTAATCCCGATCTCTTGGT
131 AAAATCACAGTTTAATCTCGA-TGTTGTTATTCTTTGACTTGTAATTTAATCCCGATCTCTTGAT
7910022 GTTTCAACT
195 GTTTCAACT
* *
7910031 CGCGGTTTAATCCCAATCTCTTTAATTAAAAATCGCAGTTTAATCTCAATCGTTGTTATTCTTTG
1 CGCGGTTTAATCCCAATCTCTTTAATTCAAAATCGCAGTTTAATCTCAATTGTTGTTATTCTTTG
* * * * *
7910096 ACTTACGATTTAATCTCGGTCTCTTTATGTTTTGACTCGCGGTTTAATCTCAATCTCTTTAATTC
66 ACTTGCGATTTAATCTCGATCTCTTGATGTTTTGACTCGCAGTTTAATCCCAATCTCTTTAATTC
*** *
7910161 AAAATTGTAGTTTAATCTCGATGTTGTTATTCTTTGACTTGTAATTTAATCCCGATCTTTTGATG
131 AAAATCACAGTTTAATCTCGATGTTGTTATTCTTTGACTTGTAATTTAATCCCGATCTCTTGATG
*
7910226 TTTCGACT
196 TTTCAACT
** * * * * * *
7910234 TACAGTTTAATCACAATCTTTTTAATTCAAAATCGTAATTTAATCTCGATTGTTGTTATTCTTTG
1 CGCGGTTTAATCCCAATCTCTTTAATTCAAAATCGCAGTTTAATCTCAATTGTTGTTATTCTTTG
** *
7910299 ACCCGCGATTTAATCTCAATCTCTT
66 ACTTGCGATTTAATCTCGATCTCTT
7910324 TAATTCAAAA
Statistics
Matches: 255, Mismatches: 38, Indels: 1
0.87 0.13 0.00
Matches are distributed among these distances:
203 122 0.48
204 133 0.52
ACGTcount: A:0.24, C:0.19, G:0.12, T:0.45
Consensus pattern (203 bp):
CGCGGTTTAATCCCAATCTCTTTAATTCAAAATCGCAGTTTAATCTCAATTGTTGTTATTCTTTG
ACTTGCGATTTAATCTCGATCTCTTGATGTTTTGACTCGCAGTTTAATCCCAATCTCTTTAATTC
AAAATCACAGTTTAATCTCGATGTTGTTATTCTTTGACTTGTAATTTAATCCCGATCTCTTGATG
TTTCAACT
Found at i:7910311 original size:68 final size:68
Alignment explanation
Indices: 7910239--7910391 Score: 216
Period size: 68 Copynumber: 2.2 Consensus size: 68
7910229 CGACTTACAG
* ** *
7910239 TTTAATCACAATCTTTTTAATTCAAAATCGTAATTTAATCTCGATTGTTGTTATTCTTTGACCCG
1 TTTAATCACAATCTCTTTAATTCAAAATCACAATTTAATCTCAATTGTTGTTATTCTTTGACCCG
7910304 CGA
66 CGA
* * **
7910307 TTTAATCTCAATCTCTTTAATTCAAAATCACAGTTTAATCTCAATTGTTGTTATTCTTTGACTTG
1 TTTAATCACAATCTCTTTAATTCAAAATCACAATTTAATCTCAATTGTTGTTATTCTTTGACCCG
7910372 CGA
66 CGA
* *
7910375 TTTAATCTCGATCTCTT
1 TTTAATCACAATCTCTT
7910392 GATGTTTTGA
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
68 76 1.00
ACGTcount: A:0.27, C:0.18, G:0.09, T:0.46
Consensus pattern (68 bp):
TTTAATCACAATCTCTTTAATTCAAAATCACAATTTAATCTCAATTGTTGTTATTCTTTGACCCG
CGA
Found at i:7910349 original size:33 final size:33
Alignment explanation
Indices: 7910307--7910454 Score: 111
Period size: 33 Copynumber: 4.4 Consensus size: 33
7910297 TGACCCGCGA
*
7910307 TTTAATCTCAATCTCTTTAATTCAAAATCACAG
1 TTTAATCTCAATCTCTTTAATTCAAAATCGCAG
* * ** * *
7910340 TTTAATCTCAAT-TGTTGTTATTCTTTGACTTGC-G
1 TTTAATCTCAATCTCTT-TAATTC--AAAATCGCAG
* * * *** *
7910374 ATTTAATCTCGATCTCTTGATGTTTTGACTCGCAG
1 -TTTAATCTCAATCTCTTTA-ATTCAAAATCGCAG
7910409 TTTAATCTCAATCTCTTTAATTCAAAATCGCAG
1 TTTAATCTCAATCTCTTTAATTCAAAATCGCAG
7910442 TTTAATCTCAATC
1 TTTAATCTCAATC
7910455 GTTGTTATTC
Statistics
Matches: 87, Mismatches: 21, Indels: 14
0.71 0.17 0.11
Matches are distributed among these distances:
32 3 0.03
33 39 0.45
34 25 0.29
35 15 0.17
36 5 0.06
ACGTcount: A:0.27, C:0.20, G:0.09, T:0.44
Consensus pattern (33 bp):
TTTAATCTCAATCTCTTTAATTCAAAATCGCAG
Found at i:7910401 original size:102 final size:102
Alignment explanation
Indices: 7910295--7910516 Score: 340
Period size: 102 Copynumber: 2.2 Consensus size: 102
7910285 GTTGTTATTC
* *
7910295 TTTGACCCGCGATTTAATCTCAATCTCTTTAATTCAAAATCACAGTTTAATCTCAATTGTTGTTA
1 TTTGACTCGCGATTTAATCTCAATCTCTTTAATTCAAAATCACAGTTTAATCTCAATCGTTGTTA
* *
7910360 TTCTTTGACTTGCGATTTAATCTC-GATCTCTTGATGT
66 TTCTTTGACTTACGATTTAATCCCAG-TCTCTTGATGT
*
7910397 TTTGACTCGC-AGTTTAATCTCAATCTCTTTAATTCAAAATCGCAGTTTAATCTCAATCGTTGTT
1 TTTGACTCGCGA-TTTAATCTCAATCTCTTTAATTCAAAATCACAGTTTAATCTCAATCGTTGTT
* *
7910461 ATTCTTTGACTTACGGTTTAATCCCAGTCTCTTTATGT
65 ATTCTTTGACTTACGATTTAATCCCAGTCTCTTGATGT
*
7910499 TTTGACTCGCGATCTAAT
1 TTTGACTCGCGATTTAAT
7910517 TTCGATCTTC
Statistics
Matches: 109, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
101 1 0.01
102 106 0.97
103 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.12, T:0.44
Consensus pattern (102 bp):
TTTGACTCGCGATTTAATCTCAATCTCTTTAATTCAAAATCACAGTTTAATCTCAATCGTTGTTA
TTCTTTGACTTACGATTTAATCCCAGTCTCTTGATGT
Found at i:7910483 original size:170 final size:169
Alignment explanation
Indices: 7910126--7910495 Score: 524
Period size: 170 Copynumber: 2.2 Consensus size: 169
7910116 CTCTTTATGT
*** *
7910126 TTTGACTCGCGGTTTAATCTCAATCTCTTTAATTCAAAATTGTAGTTTAATCTCGATGTTGTTAT
1 TTTGACTCGCGGTTTAATCTCAATCTCTTTAATTCAAAATCACAGTTTAATCTCAATGTTGTTAT
* * * *
7910191 TCTTTGACTTGTAATTTAATCCCGATCTTTTGATGTTTCGACTTACAGTTTAATCACAATCTTTT
66 TCTTTGACTTGCAATTTAATCCCGATCTCTTGATGTTTCGACTCACAGTTTAATCACAATCTCTT
* * *
7910256 TAATTCAAAATCGTAATTTAATCTCGATTGTTGTTATTC
131 TAATTCAAAATCGCAATTTAATCTCAATCGTTGTTATTC
* *
7910295 TTTGACCCGCGATTTAATCTCAATCTCTTTAATTCAAAATCACAGTTTAATCTCAATTGTTGTTA
1 TTTGACTCGCGGTTTAATCTCAATCTCTTTAATTCAAAATCACAGTTTAATCTCAA-TGTTGTTA
* * * * *
7910360 TTCTTTGACTTGCGATTTAATCTCGATCTCTTGATGTTTTGACTCGCAGTTTAATCTCAATCTCT
65 TTCTTTGACTTGCAATTTAATCCCGATCTCTTGATGTTTCGACTCACAGTTTAATCACAATCTCT
*
7910425 TTAATTCAAAATCGCAGTTTAATCTCAATCGTTGTTATTC
130 TTAATTCAAAATCGCAATTTAATCTCAATCGTTGTTATTC
** * *
7910465 TTTGACTTACGGTTTAATCCCAGTCTCTTTA
1 TTTGACTCGCGGTTTAATCTCAATCTCTTTA
7910496 TGTTTTGACT
Statistics
Matches: 175, Mismatches: 25, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
169 50 0.29
170 125 0.71
ACGTcount: A:0.25, C:0.18, G:0.12, T:0.45
Consensus pattern (169 bp):
TTTGACTCGCGGTTTAATCTCAATCTCTTTAATTCAAAATCACAGTTTAATCTCAATGTTGTTAT
TCTTTGACTTGCAATTTAATCCCGATCTCTTGATGTTTCGACTCACAGTTTAATCACAATCTCTT
TAATTCAAAATCGCAATTTAATCTCAATCGTTGTTATTC
Found at i:7910918 original size:12 final size:12
Alignment explanation
Indices: 7910881--7910929 Score: 62
Period size: 12 Copynumber: 4.1 Consensus size: 12
7910871 TTTTTTAATT
*
7910881 TAATATTAATAA
1 TAATATTAAAAA
* * *
7910893 TAATTTTGATAA
1 TAATATTAAAAA
7910905 TAATATTAAAAA
1 TAATATTAAAAA
7910917 TAATATTAAAAA
1 TAATATTAAAAA
7910929 T
1 T
7910930 TTAAAATCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (12 bp):
TAATATTAAAAA
Found at i:7910935 original size:20 final size:21
Alignment explanation
Indices: 7910882--7910970 Score: 67
Period size: 24 Copynumber: 4.1 Consensus size: 21
7910872 TTTTTAATTT
* *
7910882 AATATTAATAATAATTTTGATAA
1 AATATTAAAAATAATATT-A-AA
7910905 TAATATTAAAAATAATATTAAA
1 -AATATTAAAAATAATATTAAA
*
7910927 AAT-TT-AAAATCAAAATTATTAA
1 AATATTAAAAAT-AATATTA--AA
*
7910949 AATATTAAAAA-AATTTTAAA
1 AATATTAAAAATAATATTAAA
7910969 AA
1 AA
7910971 AAGAGAGACA
Statistics
Matches: 55, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
19 5 0.09
20 12 0.22
21 3 0.05
22 12 0.22
23 3 0.05
24 20 0.36
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.37
Consensus pattern (21 bp):
AATATTAAAAATAATATTAAA
Found at i:7912088 original size:23 final size:22
Alignment explanation
Indices: 7912062--7912113 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
7912052 GAGTTTTTTT
*
7912062 TTTTTATATTT-ATACATGATAAA
1 TTTTTAAATTTGATA-A-GATAAA
*
7912085 TTTTTAAATTTGTTAAGATAAA
1 TTTTTAAATTTGATAAGATAAA
7912107 TTTTTAA
1 TTTTTAA
7912114 TTATTTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 13 0.50
23 11 0.42
24 2 0.08
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.54
Consensus pattern (22 bp):
TTTTTAAATTTGATAAGATAAA
Found at i:7912193 original size:3 final size:3
Alignment explanation
Indices: 7912185--7912229 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
7912175 TGCTTAAGAA
*
7912185 AAT AAT AAT TAT AAT AA- AAT AAT AAT AA- AAT AAT AAT AA- AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
7912230 TTTTATTATT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
2 6 0.16
3 31 0.84
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Done.