Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 40 of 77
Found at i:7912211 original size:11 final size:11
Alignment explanation
Indices: 7912185--7912229 Score: 72
Period size: 11 Copynumber: 4.0 Consensus size: 11
7912175 TGCTTAAGAA
*
7912185 AATAATAATTAT
1 AATAA-AATAAT
7912197 AATAAAATAAT
1 AATAAAATAAT
7912208 AATAAAATAAT
1 AATAAAATAAT
7912219 AATAAAATAAT
1 AATAAAATAAT
7912230 TTTTATTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
11 27 0.84
12 5 0.16
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:7912542 original size:31 final size:31
Alignment explanation
Indices: 7912502--7912560 Score: 84
Period size: 32 Copynumber: 1.9 Consensus size: 31
7912492 CTAAAACCCC
* *
7912502 TAAAATCAAAA-TCCCTCAATCCAAATCTCT
1 TAAAATCAAAACTCCCTAAAACCAAATCTCT
7912532 TAAAATTCAAAACTCCCTAAAACCAAATC
1 TAAAA-TCAAAACTCCCTAAAACCAAATC
7912561 CCAAAACCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.20
31 6 0.24
32 14 0.56
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (31 bp):
TAAAATCAAAACTCCCTAAAACCAAATCTCT
Found at i:7913042 original size:25 final size:23
Alignment explanation
Indices: 7913014--7913059 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
7913004 CTGTTTGATG
*
7913014 ATAAAATATTTTATAATAAAAAAGA
1 ATAAAACATTTTA-AA-AAAAAAGA
*
7913039 ATAATACATTTTAAAAAAAAA
1 ATAAAACATTTTAAAAAAAAA
7913060 TTGTGATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 2 0.11
25 11 0.58
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (23 bp):
ATAAAACATTTTAAAAAAAAAGA
Found at i:7916026 original size:14 final size:14
Alignment explanation
Indices: 7916007--7916033 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7915997 TCATACCTTC
7916007 ATAAAAATATTTAA
1 ATAAAAATATTTAA
7916021 ATAAAAATATTTA
1 ATAAAAATATTTA
7916034 TGAATGAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATAAAAATATTTAA
Found at i:7918218 original size:106 final size:106
Alignment explanation
Indices: 7917921--7918321 Score: 321
Period size: 106 Copynumber: 3.8 Consensus size: 106
7917911 ATTTATTATG
* * ** *
7917921 TTTTTTTAACAGAAATGCAGTATTTGACAACTT--TTTTTTT--TCTATTTGACTTGGT-GGTTG
1 TTTTTTTAACA-AAATGCAATATTTGAC-ATTTAATTTTTTTCATCTATTTGACTTAATAGCTT-
*
7917981 TTGATTTAATAAGCATTTATTAT-GGTTAT-AGCAATTAC--CATG
63 TTGATTTAATAAGCATTTATTATAGG-TATGA-CAATTACTGCATC
* * * * * *
7918023 TTTCTTTTAACAAAAACGCAGTATTTGATATTTAAATTTTATTCATTTATTTGACTTAATAGTTT
1 TTT-TTTTAAC-AAAATGCAATATTTGACATTT-AATTTTTTTCATCTATTTGACTTAATAGCTT
* * * *
7918088 TTTATTTAATAAGTATGTACTATAGGTATGACAATTACTGCAT-
63 TTGATTTAATAAGCATTTATTATAGGTATGACAATTACTGCATC
* * *
7918131 TTTTTTTAACATAAATGCAATATTTGACATTTAATTTTTTTCATCTATTTGATTTATTGGCTTTT
1 TTTTTTTAACA-AAATGCAATATTTGACATTTAATTTTTTTCATCTATTTGACTTAATAGCTTTT
* * * *
7918196 GATTTAATGAGCATTTATTATAGGTACGACCATTATTG--TC
65 GATTTAATAAGCATTTATTATAGGTATGACAATTACTGCATC
* * * *
7918236 TTTTTTTGACAAAATGTAATATTTGGCATTTAATTCTTTTTTTCATTTTATTT---TTAAATAGC
1 TTTTTTTAACAAAATGCAATATTTGACATTTAA---TTTTTTTCA-TCTATTTGACTT-AATAGC
7918298 TTTTGATTTAAT-AGCATTTATTAT
61 TTTTGATTTAATAAGCATTTATTAT
7918322 GGAGATAACA
Statistics
Matches: 245, Mismatches: 35, Indels: 35
0.78 0.11 0.11
Matches are distributed among these distances:
102 6 0.02
103 21 0.09
104 22 0.09
105 30 0.12
106 74 0.30
107 74 0.30
108 15 0.06
109 3 0.01
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.50
Consensus pattern (106 bp):
TTTTTTTAACAAAATGCAATATTTGACATTTAATTTTTTTCATCTATTTGACTTAATAGCTTTTG
ATTTAATAAGCATTTATTATAGGTATGACAATTACTGCATC
Found at i:7930372 original size:20 final size:20
Alignment explanation
Indices: 7930334--7930372 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7930324 ATTGTAGCTT
* *
7930334 AGGAATAGGAGAAATATTAC
1 AGGAAAAGGAGAAAGATTAC
*
7930354 AGGAAAAGGAGAGAGATTA
1 AGGAAAAGGAGAAAGATTA
7930373 TAAGTATTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.31, T:0.15
Consensus pattern (20 bp):
AGGAAAAGGAGAAAGATTAC
Found at i:7930865 original size:2 final size:2
Alignment explanation
Indices: 7930858--7930885 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7930848 AATAACCACT
7930858 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7930886 GACTACATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7931832 original size:20 final size:22
Alignment explanation
Indices: 7931790--7931853 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
7931780 ACTTAATAGT
* *
7931790 ATTATATATATTTATAATCTAA
1 ATTATATATATATATAATATAA
7931812 ATTATATA-ATATA-AATATAA
1 ATTATATATATATATAATATAA
* *
7931832 AATA-ATATATTATATTATATAA
1 ATTATATATA-TATATAATATAA
7931854 TTTGAGTGCA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 3 0.09
20 10 0.29
21 8 0.23
22 14 0.40
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
ATTATATATATATATAATATAA
Found at i:7932908 original size:107 final size:108
Alignment explanation
Indices: 7932721--7932927 Score: 364
Period size: 107 Copynumber: 1.9 Consensus size: 108
7932711 ATTTGATATT
7932721 TTTTTTTTTCCTTTTTCAACATTAGTTTGCTATGCTTTGTTTCTTGTTGACCAAGGATTTCAAGT
1 TTTTTTTTTCCTTTTTCAACATTAGTTTGCTATGCTTTGTTTCTTGTTGACCAAGGATTTCAAGT
* * *
7932786 TTTTATATTGTATTCTTGCTTTTAATTTGTTTTATTAGAAGGA
66 TTTTAAATTGTATTCTTGCTTTCAAATTGTTTTATTAGAAGGA
7932829 TTTTTTTTT-CTTTTTCAACATTAGTTTG-TCATGCTTTGTTTCTTGTTGACCAAGGATTTCAAG
1 TTTTTTTTTCCTTTTTCAACATTAGTTTGCT-ATGCTTTGTTTCTTGTTGACCAAGGATTTCAAG
7932892 TTTTTAAATTGTATTCTTGCTTTCAAATTGTTTTAT
65 TTTTTAAATTGTATTCTTGCTTTCAAATTGTTTTAT
7932928 ACTTTGATGC
Statistics
Matches: 95, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
106 1 0.01
107 85 0.89
108 9 0.09
ACGTcount: A:0.19, C:0.12, G:0.13, T:0.56
Consensus pattern (108 bp):
TTTTTTTTTCCTTTTTCAACATTAGTTTGCTATGCTTTGTTTCTTGTTGACCAAGGATTTCAAGT
TTTTAAATTGTATTCTTGCTTTCAAATTGTTTTATTAGAAGGA
Found at i:7938865 original size:31 final size:31
Alignment explanation
Indices: 7938829--7938893 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
7938819 GTTTAAGAAT
*
7938829 AAAATTGTAAAAATTATTACATTCATTTATA
1 AAAATTGTAAAAACTATTACATTCATTTATA
*
7938860 AAAATTGTAAAAGCTATTACATTCATTTATA
1 AAAATTGTAAAAACTATTACATTCATTTATA
7938891 AAA
1 AAA
7938894 TGATAATCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.38
Consensus pattern (31 bp):
AAAATTGTAAAAACTATTACATTCATTTATA
Found at i:7942122 original size:48 final size:48
Alignment explanation
Indices: 7942051--7942184 Score: 126
Period size: 48 Copynumber: 2.8 Consensus size: 48
7942041 TCAATTTTAG
* * * *
7942051 CCTCATTTGCATCACTATCTTCTGCTAAATTAGCAATACCATCATCAA
1 CCTCATTTGCATCAATGTTTTCTGCTAAATTAGCAATACCATCATAAA
* ** * *
7942099 CCTCATTTGCATCATTGTTTTCTGCTTCATTA-TAAGTACTATCATAAA
1 CCTCATTTGCATCAATGTTTTCTGCTAAATTAGCAA-TACCATCATAAA
* * * * *
7942147 CCTTATTAGCACCAATGTTTTTTGCCAAATTAGCAATA
1 CCTCATTTGCATCAATGTTTTCTGCTAAATTAGCAATA
7942185 TTATTTCCAC
Statistics
Matches: 67, Mismatches: 17, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
47 2 0.03
48 63 0.94
49 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (48 bp):
CCTCATTTGCATCAATGTTTTCTGCTAAATTAGCAATACCATCATAAA
Found at i:7942233 original size:36 final size:36
Alignment explanation
Indices: 7942156--7942239 Score: 114
Period size: 36 Copynumber: 2.3 Consensus size: 36
7942146 ACCTTATTAG
* * *
7942156 CACCAATGTTTTTTGCCAAATTAGCAATATTATTTC
1 CACCATTGTTTTATGCCAAATTAGCAATATCATTTC
* *
7942192 CACCATTGTTTTATGCCAAATTAGCAGTATCATTTT
1 CACCATTGTTTTATGCCAAATTAGCAATATCATTTC
*
7942228 CACCATTATTTT
1 CACCATTGTTTT
7942240 TAGTATTATC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.43
Consensus pattern (36 bp):
CACCATTGTTTTATGCCAAATTAGCAATATCATTTC
Found at i:7945395 original size:22 final size:23
Alignment explanation
Indices: 7945370--7945413 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
7945360 CTCTTTTTGT
*
7945370 TTTTTTGTTTTATTTTT-TTATA
1 TTTTTTGTTTAATTTTTATTATA
7945392 TTTTTTGTTTAATTTTTATTAT
1 TTTTTTGTTTAATTTTTATTAT
7945414 TGTATTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.80
Consensus pattern (23 bp):
TTTTTTGTTTAATTTTTATTATA
Found at i:7945742 original size:48 final size:48
Alignment explanation
Indices: 7945676--7946055 Score: 354
Period size: 48 Copynumber: 7.9 Consensus size: 48
7945666 AATTTAAAAT
* *
7945676 TTGAAAGAGGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTTTATC
1 TTGAAA-AAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTTATC
* * * * * *
7945725 TTGAAAAGGCTCATCTCAGCAGAGGTTTAACAATTTTAAAAATTTAT-
1 TTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTTATC
* * ** * *
7945772 TTGAAAAAGTTCCTCTCAGCAGAGGTTCAATGACTTTAAAATCTCATC
1 TTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTTATC
* *
7945820 TT-AGAAAAGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAAATTTCATC
1 TTGA-AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATTTTATC
* * *
7945869 TTGAAAAAGCTCCTCTCAGCAAATGCTCAACAACTTT-AAATTTTCATT
1 TTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTT-ATC
* * * * * *
7945917 TTGAACAAGCTCCTCTTAACAGAGGCTCAACGACTTTAAAATCTCATC
1 TTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTTATC
* ** * * * *
7945965 -TGAAAAAACTTATCTCAGTAGAGGCTCAACAATTTTAAAAATCTTATT
1 TTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATTTTATC
* * *
7946013 TTGAAAAAAGATTCCTTTCAGCAAAGGCTCAACAACTTTAAAA
1 TTG-AAAAAG-CTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
7946056 ATTCTCATTT
Statistics
Matches: 266, Mismatches: 55, Indels: 19
0.78 0.16 0.06
Matches are distributed among these distances:
47 71 0.27
48 109 0.41
49 55 0.21
50 10 0.04
51 21 0.08
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.31
Consensus pattern (48 bp):
TTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTTATC
Found at i:7945838 original size:95 final size:97
Alignment explanation
Indices: 7945676--7946063 Score: 356
Period size: 95 Copynumber: 4.0 Consensus size: 97
7945666 AATTTAAAAT
* * * *
7945676 TTGAAAGAGGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATTTTATCTTGAAAAGGCTCATCT
1 TTGAAA-AAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAGGCTCATCT
* * *
7945741 CAGCAGAGGTTTAACAATTTTAAAAATTT-AT-
65 CAGCAGAGGCTCAACAACTTTAAAAATTTCATC
* * ** *
7945772 TTGAAAAAGTTCCTCTCAGCAGAGGTTCAATGACTTTAAAATCTCATCTTAGAAAA-GCTCCTCT
1 TTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTT-GAAAAGGCTCATCT
*
7945836 CAGTAGAGGCTCAACAACTTTAAAAATTTCATC
65 CAGCAGAGGCTCAACAACTTTAAAAATTTCATC
* * * * * *
7945869 TTGAAAAAGCTCCTCTCAGCAAATGCTCAACAACTTTAAATTTTCATTTTGAACAA-GCTCCTCT
1 TTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAA-AAGGCTCATCT
* * * *
7945933 TAACAGAGGCTCAACGACTTT-AAAATCTCATC
65 CAGCAGAGGCTCAACAACTTTAAAAATTTCATC
* ** * * * * ** *
7945965 -TGAAAAAACTTATCTCAGTAGAGGCTCAACAATTTTAAAAATCTTATTTTGAAAAAAGATTCCT
1 TTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTT-AAAATCTCATCTTG--AAAAGGCTCAT
* *
7946029 TTCAGCAAAGGCTCAACAACTTTAAAAATTCTCAT
63 CTCAGCAGAGGCTCAACAACTTTAAAAATT-TCAT
7946064 TTGTTCTTCA
Statistics
Matches: 237, Mismatches: 45, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
95 97 0.41
96 37 0.16
97 70 0.30
98 24 0.10
99 5 0.02
100 4 0.02
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.31
Consensus pattern (97 bp):
TTGAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAGGCTCATCTC
AGCAGAGGCTCAACAACTTTAAAAATTTCATC
Found at i:7958338 original size:12 final size:12
Alignment explanation
Indices: 7958321--7958363 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
7958311 TATCAAAAAC
7958321 TTTTATTATTTA
1 TTTTATTATTTA
7958333 TTTTATTATATT-
1 TTTTATTAT-TTA
*
7958345 TTTTATTAATTA
1 TTTTATTATTTA
7958357 TTATTAT
1 TT-TTAT
7958364 AAAACAACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 2 0.07
12 19 0.70
13 6 0.22
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (12 bp):
TTTTATTATTTA
Found at i:7959424 original size:16 final size:16
Alignment explanation
Indices: 7959403--7959438 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
7959393 TTTTGAAGCC
7959403 TATTCAAAATTCGAAA
1 TATTCAAAATTCGAAA
7959419 TATTCAAAATTCGAAA
1 TATTCAAAATTCGAAA
7959435 TATT
1 TATT
7959439 TTATCTTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.36
Consensus pattern (16 bp):
TATTCAAAATTCGAAA
Found at i:7959622 original size:16 final size:16
Alignment explanation
Indices: 7959601--7959662 Score: 56
Period size: 16 Copynumber: 4.0 Consensus size: 16
7959591 TAATTTTATT
7959601 ATATATAAAAGTAAAA
1 ATATATAAAAGTAAAA
* *
7959617 ATATATAAAAATAATA
1 ATATATAAAAGTAAAA
*
7959633 A-ATCTAAAA-TAAAA
1 ATATATAAAAGTAAAA
* * *
7959647 AAACAAAAAAGTAAAA
1 ATATATAAAAGTAAAA
7959663 GTAAAAGTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
14 5 0.14
15 12 0.32
16 20 0.54
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (16 bp):
ATATATAAAAGTAAAA
Found at i:7960839 original size:2 final size:2
Alignment explanation
Indices: 7960834--7960861 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7960824 ACGGTAACTT
7960834 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7960862 GATACATAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7963009 original size:34 final size:34
Alignment explanation
Indices: 7962971--7963035 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
7962961 TTATTTATTC
7962971 TTGGGGGTGGGGTGATAAACGATTTAAATGATTT
1 TTGGGGGTGGGGTGATAAACGATTTAAATGATTT
*
7963005 TTGGGGGTGGGGTGATAAATGATTTAAATGA
1 TTGGGGGTGGGGTGATAAACGATTTAAATGA
7963036 AGAATATGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.28, C:0.02, G:0.37, T:0.34
Consensus pattern (34 bp):
TTGGGGGTGGGGTGATAAACGATTTAAATGATTT
Found at i:7967254 original size:22 final size:22
Alignment explanation
Indices: 7967226--7967268 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
7967216 GGTACTTCTA
7967226 TTTACATGTTTTAGTGAACAGT
1 TTTACATGTTTTAGTGAACAGT
7967248 TTTACATGTTTTAGTGAACAG
1 TTTACATGTTTTAGTGAACAG
7967269 AAACTATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (22 bp):
TTTACATGTTTTAGTGAACAGT
Found at i:7982494 original size:20 final size:20
Alignment explanation
Indices: 7982469--7982508 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
7982459 TGATTCACGA
7982469 AATTTTAAATTTAAAAAAAG
1 AATTTTAAATTTAAAAAAAG
* * *
7982489 AATTTTGATTTTCAAAAAAG
1 AATTTTAAATTTAAAAAAAG
7982509 TGTGGATTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.03, G:0.07, T:0.38
Consensus pattern (20 bp):
AATTTTAAATTTAAAAAAAG
Found at i:7983701 original size:99 final size:98
Alignment explanation
Indices: 7983525--7983913 Score: 369
Period size: 99 Copynumber: 3.9 Consensus size: 98
7983515 AATTCTAACA
* * * * * *
7983525 TTCACACATAACATTATTGTTTCCAGCCATCGTAGATGC-TTCA-TTTTCTCGTGAATTCACATT
1 TTCAAACATAATATTATTATTTACAACCATCATAGAT-CTTTCATTTTTCT-GTGAATTCACATT
7983588 AACAATTGGTTGAGAATTAAAATTTGATTTCTGATC
64 AACAATTGGTTGAGAATTAAAATTTGATTT-TGATC
* *
7983624 TTCAAACATAATGTTATTATTTACAACCATCATAGATCTTTCATTTTTCTGCGAATTCACATTAA
1 TTCAAACATAATATTATTATTTACAACCATCATAGATCTTTCATTTTTCTGTGAATTCACATTAA
* * * ** *
7983689 TAGTTGGCTGAGAATTAGCATTTGACTTTTTATC
66 CAATTGGTTGAGAATTAAAATTTGA-TTTTGATC
* * * * * * * *
7983723 TTTAAACATAATATTATTGTTTCCAACCATCCTAGATGTTAT-ATTTTCCTGTTAATTGACATTA
1 TTCAAACATAATATTATTATTTACAACCATCATAGATCTT-TCATTTTTCTGTGAATTCACATTA
**
7983787 ACAATTGGTTGAGAATTAAAATTCAATTTTTGATC
65 ACAATTGGTTGAGAATTAAAATTTGA-TTTTGATC
* * * *
7983822 TTCAAACATAATATTATTGTTT-CTAGA-CATCCTAAATACTCT-A-TTTTCTTGTGAATTCACA
1 TTCAAACATAATATTATTATTTAC-A-ACCATCATAGAT-CTTTCATTTTTC-TGTGAATTCACA
**
7983883 TTAACAATTGGTTGAGAATTAGCATTTGATT
62 TTAACAATTGGTTGAGAATTAAAATTTGATT
7983914 ACTATTGGTT
Statistics
Matches: 238, Mismatches: 44, Indels: 17
0.80 0.15 0.06
Matches are distributed among these distances:
98 8 0.03
99 218 0.92
100 12 0.05
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.42
Consensus pattern (98 bp):
TTCAAACATAATATTATTATTTACAACCATCATAGATCTTTCATTTTTCTGTGAATTCACATTAA
CAATTGGTTGAGAATTAAAATTTGATTTTGATC
Found at i:7983792 original size:198 final size:198
Alignment explanation
Indices: 7983530--7983911 Score: 506
Period size: 198 Copynumber: 1.9 Consensus size: 198
7983520 TAACATTCAC
* *
7983530 ACATAACATTATTGTTTCCAGCCATCGTAGATGCTTCATTTTCTCGTGAATTCACATTAACAATT
1 ACATAACATTATTGTTTCCAACCATCCTAGATGCTTCATTTTCTCGTGAATTCACATTAACAATT
** *
7983595 GGTTGAGAATTAAAATTTGATTTCTGATCTTCAAACATAATGTTATTATTTAC-A-ACCATCATA
66 GGTTGAGAATTAAAATTCAATTTCTGATCTTCAAACATAATATTATTATTT-CTAGA-CATCATA
* * * *
7983658 GAT-CTTTCATTTT-TCTGCGAATTCACATTAATAGTTGGCTGAGAATTAGCATTTGACTTTTTA
129 AATACTCT-ATTTTCT-TGCGAATTCACATTAACAATTGGCTGAGAATTAGCATTTGACTTTTTA
7983721 TCTTTAA
192 TCTTTAA
* * * *
7983728 ACATAATATTATTGTTTCCAACCATCCTAGATG-TTATATTTTC-CTGTTAATTGACATTAACAA
1 ACATAACATTATTGTTTCCAACCATCCTAGATGCTT-CATTTTCTC-GTGAATTCACATTAACAA
* * *
7983791 TTGGTTGAGAATTAAAATTCAATTTTTGATCTTCAAACATAATATTATTGTTTCTAGACATCCTA
64 TTGGTTGAGAATTAAAATTCAATTTCTGATCTTCAAACATAATATTATTATTTCTAGACATCATA
* *
7983856 AATACTCTATTTTCTTGTGAATTCACATTAACAATTGGTTGAGAATTAGCATTTGA
129 AATACTCTATTTTCTTGCGAATTCACATTAACAATTGGCTGAGAATTAGCATTTGA
7983912 TTACTATTGG
Statistics
Matches: 160, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
197 4 0.03
198 151 0.94
199 5 0.03
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.42
Consensus pattern (198 bp):
ACATAACATTATTGTTTCCAACCATCCTAGATGCTTCATTTTCTCGTGAATTCACATTAACAATT
GGTTGAGAATTAAAATTCAATTTCTGATCTTCAAACATAATATTATTATTTCTAGACATCATAAA
TACTCTATTTTCTTGCGAATTCACATTAACAATTGGCTGAGAATTAGCATTTGACTTTTTATCTT
TAA
Found at i:7987048 original size:25 final size:24
Alignment explanation
Indices: 7986987--7987037 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
7986977 CAAACAGTGC
* *
7986987 ATTGTATCATATATACAAGTCAAA
1 ATTGTATCATTTACACAAGTCAAA
*
7987011 ATTGTATCATTTACACAAGTCCAA
1 ATTGTATCATTTACACAAGTCAAA
7987035 ATT
1 ATT
7987038 TGTTCAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.16, G:0.08, T:0.35
Consensus pattern (24 bp):
ATTGTATCATTTACACAAGTCAAA
Found at i:7989697 original size:295 final size:295
Alignment explanation
Indices: 7989165--7989723 Score: 965
Period size: 295 Copynumber: 1.9 Consensus size: 295
7989155 ATCCTTAAAC
* * * *
7989165 CATTTCTATGTGTAATGACATTCATGAGCATTCTGTCATTTGTTGCAAAACTTTTTCATCCTGGT
1 CATTTCTATGTATAATGACATTCATGAGCATTCTGCCATTTGCTGCAAAACTTTTCCATCCTGGT
*
7989230 GAATGTATATAAATTGCATGTTTGGTGTGCAAACATCAAGAACATTGGTAGCAATTTCATTTTTT
66 GAATGTATATAAATTGCATGTTTGGTGTGCAAACATCAAGAACATTGATAGCAATTTCATTTTTT
*
7989295 TCAATCTTGTATCTCGGCCTATCAACTGAGTCTATATTCATTTTTATGTATATTCCATATAACAC
131 TCAATCTTGTATCTAGGCCTATCAACTGAGTCTATATTCATTTTTATGTATATTCCATATAACAC
* *
7989360 ATCCAATGAATCCTTGAACAATTTTCATCTATTATTTGTTGAATTTTTCAATATTGGTTTTAATT
196 ATCCAAAGAATCCTTGAACAATTTTCATCTATTATCTGTTGAATTTTTCAATATTGGTTTTAATT
7989425 TTTTAACAAAACCAATATTTGCAACAAAATAAAAT
261 TTTTAACAAAACCAATATTTGCAACAAAATAAAAT
7989460 CATTTCTATGTATAATGACATTCATGAGCATTCTGCCATTTGCTGCAAAACTTTTCCATCCTGGT
1 CATTTCTATGTATAATGACATTCATGAGCATTCTGCCATTTGCTGCAAAACTTTTCCATCCTGGT
* *
7989525 GAATGTATATAAATTGCATGTTTGGTGTGCAAACATCAAGAATATTGATAGTAATTTCATTTTTT
66 GAATGTATATAAATTGCATGTTTGGTGTGCAAACATCAAGAACATTGATAGCAATTTCATTTTTT
** *
7989590 TCAATCTTGTATCTAGGTTTGTCAACTGAGTCTATATTCATTTTTATGTATATTCCATATAACAC
131 TCAATCTTGTATCTAGGCCTATCAACTGAGTCTATATTCATTTTTATGTATATTCCATATAACAC
* * * *
7989655 ATCCAAAGAATCCTTGAACCATTTTTATCTATTATCTGTTGAATTTTTTAATATTGGTTTTAGTT
196 ATCCAAAGAATCCTTGAACAATTTTCATCTATTATCTGTTGAATTTTTCAATATTGGTTTTAATT
7989720 TTTT
261 TTTT
7989724 TTTTAAATAA
Statistics
Matches: 247, Mismatches: 17, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
295 247 1.00
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.43
Consensus pattern (295 bp):
CATTTCTATGTATAATGACATTCATGAGCATTCTGCCATTTGCTGCAAAACTTTTCCATCCTGGT
GAATGTATATAAATTGCATGTTTGGTGTGCAAACATCAAGAACATTGATAGCAATTTCATTTTTT
TCAATCTTGTATCTAGGCCTATCAACTGAGTCTATATTCATTTTTATGTATATTCCATATAACAC
ATCCAAAGAATCCTTGAACAATTTTCATCTATTATCTGTTGAATTTTTCAATATTGGTTTTAATT
TTTTAACAAAACCAATATTTGCAACAAAATAAAAT
Found at i:7991219 original size:101 final size:101
Alignment explanation
Indices: 7991062--7991256 Score: 354
Period size: 101 Copynumber: 1.9 Consensus size: 101
7991052 GTATTTGACA
* * *
7991062 TTGAAAAAAAAAGTACTCAAATACTACATTAGTGCTTCCTGCTAACACAATATTTGTGCTATTTG
1 TTGAAAAAAAAAGTACTAAAATACTACATTAATGCTTCCTACTAACACAATATTTGTGCTATTTG
*
7991127 TTTTTTATACTACATTTGTAAATAAAAAAGCAATAT
66 TTTTTAATACTACATTTGTAAATAAAAAAGCAATAT
7991163 TTGAAAAAAAAAGTACTAAAATACTACATTAATGCTTCCTACTAACACAATATTTGTGCTATTTG
1 TTGAAAAAAAAAGTACTAAAATACTACATTAATGCTTCCTACTAACACAATATTTGTGCTATTTG
7991228 TTTTTAATACTACATTTGTAAATAAAAAA
66 TTTTTAATACTACATTTGTAAATAAAAAA
7991257 CCAAAATTAA
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 90 1.00
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (101 bp):
TTGAAAAAAAAAGTACTAAAATACTACATTAATGCTTCCTACTAACACAATATTTGTGCTATTTG
TTTTTAATACTACATTTGTAAATAAAAAAGCAATAT
Found at i:7991764 original size:21 final size:20
Alignment explanation
Indices: 7991737--7991780 Score: 61
Period size: 22 Copynumber: 2.1 Consensus size: 20
7991727 TTATTTTTTT
*
7991737 TATTTTAATAGGATTTTTAATA
1 TATTTAAATA-GATTTTT-ATA
7991759 TATTTAAATAGATTTTTATA
1 TATTTAAATAGATTTTTATA
7991779 TA
1 TA
7991781 AAATAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.55
Consensus pattern (20 bp):
TATTTAAATAGATTTTTATA
Found at i:7993155 original size:42 final size:42
Alignment explanation
Indices: 7993108--7993238 Score: 121
Period size: 42 Copynumber: 3.1 Consensus size: 42
7993098 TTTGACTAAT
7993108 AAATAAATTATCCTATCATAATCCTTACACATATCAAACACA
1 AAATAAATTATCCTATCATAATCCTTACACATATCAAACACA
* * * *
7993150 AAATAAGATGA-CATTAT-TTAAT--TTA-ATCATATTCATAATATC-
1 AAATAA-ATTATC-CTATCATAATCCTTACA-CATA-TCA-AACA-CA
*
7993192 AAATAAATTATCCTATCACAATCCTTACACATATCAAACACA
1 AAATAAATTATCCTATCATAATCCTTACACATATCAAACACA
7993234 AAATA
1 AAATA
7993239 GGATGACATT
Statistics
Matches: 68, Mismatches: 9, Indels: 24
0.67 0.09 0.24
Matches are distributed among these distances:
39 1 0.01
40 7 0.10
41 10 0.15
42 32 0.47
43 10 0.15
44 7 0.10
45 1 0.01
ACGTcount: A:0.48, C:0.19, G:0.02, T:0.31
Consensus pattern (42 bp):
AAATAAATTATCCTATCATAATCCTTACACATATCAAACACA
Found at i:7993201 original size:84 final size:84
Alignment explanation
Indices: 7993108--7993276 Score: 320
Period size: 84 Copynumber: 2.0 Consensus size: 84
7993098 TTTGACTAAT
*
7993108 AAATAAATTATCCTATCATAATCCTTACACATATCAAACACAAAATAAGATGACATTATTTAATT
1 AAATAAATTATCCTATCACAATCCTTACACATATCAAACACAAAATAAGATGACATTATTTAATT
7993173 TAATCATATTCATAATATC
66 TAATCATATTCATAATATC
*
7993192 AAATAAATTATCCTATCACAATCCTTACACATATCAAACACAAAATAGGATGACATTATTTAATT
1 AAATAAATTATCCTATCACAATCCTTACACATATCAAACACAAAATAAGATGACATTATTTAATT
7993257 TAATCATATTCATAATATC
66 TAATCATATTCATAATATC
7993276 A
1 A
7993277 TCTTATCTTA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
84 83 1.00
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (84 bp):
AAATAAATTATCCTATCACAATCCTTACACATATCAAACACAAAATAAGATGACATTATTTAATT
TAATCATATTCATAATATC
Found at i:7993928 original size:386 final size:386
Alignment explanation
Indices: 7993192--7994080 Score: 947
Period size: 386 Copynumber: 2.3 Consensus size: 386
7993182 TCATAATATC
* * * * * * *
7993192 AAATAAATTATCCTATCACAATCCTTACACATATCAAACACAAAATAGGATGACATTATTTAATT
1 AAATAAATTATTCTATCAAAATCCTTACATATATCAAATACAAAATAGTATGATATTATTTAATC
* *
7993257 TAAT-C-ATATTCATAATATCATCTTA-TC--T-TATCCTGTCATAATATTATGTACCAAATACA
66 TAATACTA-ATT-ATAATATCATCTTATTCTATCTATCCTATCATAATATTATGCACCAAATACA
** * * * *
7993316 TTTTAATGTTATGTTTGATGCATAGGATGATAGATAAGATAGGATGATAATCATCCTATATTATG
129 CCTTAAAGTTATATTTGATGCATAGGATGATAGATAAGATAAGATGATAATCATCCTATACTATG
* ** * *
7993381 TTTGGCTTGTATCTAAAGAAAATGATATGATTGTAAAGAGGATTAATCTTTTTTTGGCATAAAAT
194 TTTGGCTTGTATCTAAAGAAAATGAGA-GATTGTAAAGAGGATTAATCTCCTCTTGACATAAAAT
* ** ** * *
7993446 GAATCAATTCTCTTAAAGTGAATATAATTATTTTTAATCCATGGGATTAAACATACATGTCCTAT
258 GAATCAATCCTCACAAAGTGAATATAATTATTTTTAATCCATGAAATTAAACATACATATCCTAC
** * * *
7993511 TATACCATTAAATTTTACATTAATAATTTAAATTGTATACACTTTGAGGAAGAATAATTTT-ATC
323 TATACCATTAAAAATTACAATAATAATTTAAATTATATAAACTTT----AAGAATAATTTTGA-C
7993575 C-AT
383 CAAT
* * * *
7993578 AAATAACTTATTCTATCATAATCCTTATATATATCAAATACAAAATAGTATAATATTATTTAATC
1 AAATAAATTATTCTATCAAAATCCTTACATATATCAAATACAAAATAGTATGATATTATTTAATC
7993643 TAATACTAATTATAATATCATCTTATTCTATCATATCCTATCATAAT-TATATGCACCAAATACA
66 TAATACTAATTATAATATCATCTTATTCTATC-TATCCTATCATAATAT-TATGCACCAAATACA
* ** **
7993707 CCTTAAAGTTATATTTGATGCATAGGATGATGGATGGGATAAGATGATAATCATGTTATACTATG
129 CCTTAAAGTTATATTTGATGCATAGGATGATAGATAAGATAAGATGATAATCATCCTATACTATG
* * *
7993772 TTTGGTTTGTATCTAAA-AAAA-G-GA-ATTGTAAGGA-GATTAGTCATCCTCTTGACATAAAAT
194 TTTGGCTTGTATCTAAAGAAAATGAGAGATTGTAAAGAGGATTAATC-TCCTCTTGACATAAAAT
* * * * * * *
7993832 GATTCAATCCTCACAAAGTG-GTA-AGGATTATTTTTAATTCTTGAAATTAAACTTATATATCTT
258 GAATCAATCCTCACAAAGTGAATATA--ATTATTTTTAATCCATGAAATTAAACATACATATCCT
** * *
7993895 ACTATACTTTTAAAAATTACAATAATGATTTAAATTATATAAACTTTAAGCATAATTTTGACCAA
321 ACTATACCATTAAAAATTACAATAATAATTTAAATTATATAAACTTTAAGAATAATTTTGACCAA
7993960 T
386 T
* * *
7993961 AAAAAAATTA-TCTTATCAAAATCCTTACATACATCAAATACAAGATAGTATGATATTATTTAAT
1 AAATAAATTATTC-TATCAAAATCCTTACATATATCAAATACAAAATAGTATGATATTATTTAAT
* * * *
7994025 CTAATATTAATTATAATATCATCTTA-TC---CTATCCTATTATAATTTTATACACCAAA
65 CTAATACTAATTATAATATCATCTTATTCTATCTATCCTATCATAATATTATGCACCAAA
7994081 CATAATAAAT
Statistics
Matches: 424, Mismatches: 64, Indels: 38
0.81 0.12 0.07
Matches are distributed among these distances:
378 23 0.05
379 2 0.00
382 17 0.04
383 82 0.19
384 1 0.00
385 9 0.02
386 178 0.42
387 6 0.01
388 2 0.00
389 2 0.00
390 5 0.01
391 97 0.23
ACGTcount: A:0.40, C:0.12, G:0.09, T:0.38
Consensus pattern (386 bp):
AAATAAATTATTCTATCAAAATCCTTACATATATCAAATACAAAATAGTATGATATTATTTAATC
TAATACTAATTATAATATCATCTTATTCTATCTATCCTATCATAATATTATGCACCAAATACACC
TTAAAGTTATATTTGATGCATAGGATGATAGATAAGATAAGATGATAATCATCCTATACTATGTT
TGGCTTGTATCTAAAGAAAATGAGAGATTGTAAAGAGGATTAATCTCCTCTTGACATAAAATGAA
TCAATCCTCACAAAGTGAATATAATTATTTTTAATCCATGAAATTAAACATACATATCCTACTAT
ACCATTAAAAATTACAATAATAATTTAAATTATATAAACTTTAAGAATAATTTTGACCAAT
Found at i:7995007 original size:55 final size:55
Alignment explanation
Indices: 7994881--7995007 Score: 129
Period size: 55 Copynumber: 2.3 Consensus size: 55
7994871 CTATATCTCT
*
7994881 TTTTAAAATTTAAAAATATATAATTTAGATATATTTCTAACAATCTAGATATATGA
1 TTTT-AAATTTAAAAATATATAATTAAGATATATTTCTAACAATCTAGATATATGA
* *
7994937 TCTCTT---TTTAAAAAATATATAATTAAG-TATATATT-TAATAATCTAGATATATTTA
1 T-T-TTAAATTT-AAAAATATATAATTAAGATATAT-TTCTAACAATCTAGATATA-TGA
*
7994992 TTTTAAATTTTAAAAT
1 TTTTAAATTTAAAAAT
7995008 TTTAAATATA
Statistics
Matches: 59, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
53 2 0.03
54 24 0.41
55 26 0.44
56 4 0.07
57 1 0.02
58 2 0.03
ACGTcount: A:0.45, C:0.05, G:0.04, T:0.46
Consensus pattern (55 bp):
TTTTAAATTTAAAAATATATAATTAAGATATATTTCTAACAATCTAGATATATGA
Found at i:7995050 original size:27 final size:26
Alignment explanation
Indices: 7994999--7995050 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
7994989 TTATTTTAAA
*
7994999 TTTTAAAATTTTAAATATAATTTTAT
1 TTTTAAAATTTTAAATATAAATTTAT
*
7995025 TTTTATAAATTTTCTAATA-AAATTTA
1 TTTTA-AAATTTT-AAATATAAATTTA
7995051 AAAGACCTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 5 0.23
27 13 0.59
28 4 0.18
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (26 bp):
TTTTAAAATTTTAAATATAAATTTAT
Found at i:7997192 original size:58 final size:58
Alignment explanation
Indices: 7997101--7997215 Score: 185
Period size: 58 Copynumber: 2.0 Consensus size: 58
7997091 TTTTGATGGG
7997101 GCTAGACCTGCGCTCTGCCCCGTCCAGACCTGCGCTCTGAACCCATCCCAGATTTTTA
1 GCTAGACCTGCGCTCTGCCCCGTCCAGACCTGCGCTCTGAACCCATCCCAGATTTTTA
* * * * *
7997159 GCTAGACCTGCGCTCTGCTCCGTTCAGATCTGCGCTCTGACCCCATCCCAGTTTTTT
1 GCTAGACCTGCGCTCTGCCCCGTCCAGACCTGCGCTCTGAACCCATCCCAGATTTTT
7997216 TTTTTTCGTT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.15, C:0.38, G:0.19, T:0.28
Consensus pattern (58 bp):
GCTAGACCTGCGCTCTGCCCCGTCCAGACCTGCGCTCTGAACCCATCCCAGATTTTTA
Found at i:7997595 original size:44 final size:43
Alignment explanation
Indices: 7997532--7997794 Score: 226
Period size: 45 Copynumber: 5.9 Consensus size: 43
7997522 TTTCAAATTA
*
7997532 TGGAAGTTTT-TACACAAATTTTATTTTTAATACTTCCAAAATGG
1 TGGAAGTTTTATACA-AAATTTCATTTTTAATA-TTCCAAAATGG
* *
7997576 TGGAAGTTTTATACAAAATTCCATTTTTAATATCCCTAAAATGG
1 TGGAAGTTTTATACAAAATTTCATTTTTAATATTCC-AAAATGG
* * * * *
7997620 AGGAAATTTT-TACGCAAAAATTTTA-CTTTAATATTCCAAAACGG
1 TGGAAGTTTTATA--C-AAAATTTCATTTTTAATATTCCAAAATGG
* * * *
7997664 TGGAAGTTTTACACAAAAATTTCATATTTAACACTTCCAAAACGG
1 TGGAAGTTTTATAC-AAAATTTCATTTTTAATA-TTCCAAAATGG
* * *
7997709 TGGAAGTTTCATAACAAAATTTCATTTTTAATATTTCTAAAATGC
1 TGGAAGTTTTAT-ACAAAATTTCATTTTTAATA-TTCCAAAATGG
* * * * *
7997754 TGCAAGTTTTTGTACAAAATTTCATTCTTGATATTTCAAAA
1 TGGAAG-TTTTATACAAAATTTCATTTTTAATATTCCAAAA
7997795 CGGCAAAAGA
Statistics
Matches: 178, Mismatches: 31, Indels: 20
0.78 0.14 0.09
Matches are distributed among these distances:
43 15 0.08
44 66 0.37
45 84 0.47
46 13 0.07
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (43 bp):
TGGAAGTTTTATACAAAATTTCATTTTTAATATTCCAAAATGG
Found at i:7997650 original size:45 final size:43
Alignment explanation
Indices: 7997533--7997717 Score: 117
Period size: 44 Copynumber: 4.2 Consensus size: 43
7997523 TTCAAATTAT
* * * *
7997533 GGAAGTTTTTACAC--AAATTTTATTTTTAATACTTCCAAAATGGT
1 GGAAG-TTTTACACAAAAATTTTA-CTTTAATA-TCCCAAAACGGA
* ** * *
7997577 GGAAGTTTTATAC-AAAATTCCATTTTTAATATCCCTAAAATGGA
1 GGAAGTTTTACACAAAAATTTTA-CTTTAATATCCC-AAAACGGA
* * * *
7997621 GGAAATTTTTACGCAAAAATTTTACTTTAATATTCCAAAACGGT
1 GG-AAGTTTTACACAAAAATTTTACTTTAATATCCCAAAACGGA
* * *
7997665 GGAAGTTTTACACAAAAATTTCATA-TTTAACACTTCCAAAACGGT
1 GGAAGTTTTACACAAAAATTT--TACTTTAATA-TCCCAAAACGGA
7997710 GGAAGTTT
1 GGAAGTTT
7997718 CATAACAAAA
Statistics
Matches: 117, Mismatches: 17, Indels: 13
0.80 0.12 0.09
Matches are distributed among these distances:
43 27 0.23
44 43 0.37
45 40 0.34
46 7 0.06
ACGTcount: A:0.37, C:0.14, G:0.12, T:0.37
Consensus pattern (43 bp):
GGAAGTTTTACACAAAAATTTTACTTTAATATCCCAAAACGGA
Found at i:7997936 original size:47 final size:46
Alignment explanation
Indices: 7997885--7998009 Score: 169
Period size: 47 Copynumber: 2.7 Consensus size: 46
7997875 AAAATTCTTA
* *
7997885 TTTTAATATTTCCAAAATAGTGAAAGTTTTCATAAAACATTTTCATT
1 TTTTAATATTTCCAAAATGGTGAAAGTTTTCATAAAACATTTTCA-G
* * * *
7997932 TTTTAATATTTTCAAAATGGTGGAAGCTTTCATACAACATTTTCAG
1 TTTTAATATTTCCAAAATGGTGAAAGTTTTCATAAAACATTTTCAG
*
7997978 TTTTAATATTTCCAAAATGGCAGAAAGTTTTC
1 TTTTAATATTTCCAAAATGG-TGAAAGTTTTC
7998010 GGACAAAATT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
46 19 0.28
47 48 0.72
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.42
Consensus pattern (46 bp):
TTTTAATATTTCCAAAATGGTGAAAGTTTTCATAAAACATTTTCAG
Found at i:7998022 original size:46 final size:44
Alignment explanation
Indices: 7997875--7998044 Score: 146
Period size: 47 Copynumber: 3.7 Consensus size: 44
7997865 TTTTTACACA
* *
7997875 AAAATTCTTATTTTAATATTTCCAAAATAGTGAAAGTTTTCATA-
1 AAAATT-TCATTTTAATATTTCCAAAATGGTGAAAGTTTTCATAC
* * *
7997919 AAACATTTTCATTTTTTAATATTTTCAAAATGGTGGAAGCTTTCATAC
1 AAA-A-TTTCA--TTTTAATATTTCCAAAATGGTGAAAGTTTTCATAC
* * **
7997967 AACATTTTCAGTTTTAATATTTCCAAAATGGCAGAAAGTTTTCGGAC
1 AA-AATTTCA-TTTTAATATTTCCAAAATGG-TGAAAGTTTTCATAC
* * *
7998014 AAAATTTCATTTCAAAATTT-CAAAATAGTGA
1 AAAATTTCATTTTAATATTTCCAAAATGGTGA
7998045 GAAATTTAGA
Statistics
Matches: 101, Mismatches: 18, Indels: 15
0.75 0.13 0.11
Matches are distributed among these distances:
43 2 0.02
44 10 0.10
45 12 0.12
46 27 0.27
47 47 0.47
48 2 0.02
49 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (44 bp):
AAAATTTCATTTTAATATTTCCAAAATGGTGAAAGTTTTCATAC
Found at i:7999441 original size:34 final size:34
Alignment explanation
Indices: 7999398--7999466 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
7999388 TGACAGTGCT
7999398 ATTTGCACCAAAAAGAAGAAGTAATCGCACTGAA
1 ATTTGCACCAAAAAGAAGAAGTAATCGCACTGAA
*
7999432 ATTTGCACCAAAAGGAAGAAGTAATCGCACTGAA
1 ATTTGCACCAAAAAGAAGAAGTAATCGCACTGAA
7999466 A
1 A
7999467 CGGAAGTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.46, C:0.17, G:0.19, T:0.17
Consensus pattern (34 bp):
ATTTGCACCAAAAAGAAGAAGTAATCGCACTGAA
Found at i:8000235 original size:21 final size:22
Alignment explanation
Indices: 8000199--8000240 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
8000189 CAAGACTTTT
8000199 CATCATTTTATAAATTTAAATG
1 CATCATTTTATAAATTTAAATG
*
8000221 CATCGTTTT-TAAATTTAAAT
1 CATCATTTTATAAATTTAAAT
8000241 ATAATAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.48
Consensus pattern (22 bp):
CATCATTTTATAAATTTAAATG
Found at i:8000669 original size:2 final size:2
Alignment explanation
Indices: 8000662--8000698 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8000652 ATAACTCCCT
8000662 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8000699 TTATTGTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:8006430 original size:28 final size:26
Alignment explanation
Indices: 8006394--8006448 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
8006384 ATATTTCTTT
* *
8006394 ATTAGGTAAACCAATTTTTGTAATATAA
1 ATTAGGTAAACAAATATTTG-AAT-TAA
*
8006422 ATTATGTAAACAAATATTTGAATTAA
1 ATTAGGTAAACAAATATTTGAATTAA
8006448 A
1 A
8006449 AAATAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.17
27 3 0.12
28 17 0.71
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.38
Consensus pattern (26 bp):
ATTAGGTAAACAAATATTTGAATTAA
Found at i:8007183 original size:491 final size:490
Alignment explanation
Indices: 8006219--8007202 Score: 1792
Period size: 491 Copynumber: 2.0 Consensus size: 490
8006209 CATGGGAATT
8006219 AAACATAACTGTATTTGGTATTACTAAAACTCAAATATCATTTTATTTAAAAGTACAAAAATAAC
1 AAACATAACTGTATTTGGTATTACTAAAACTCAAATATCATTTTATTTAAAAGTACAAAAATAAC
* * *
8006284 TATGCATATTGTAATAGTTACACAAGTTAATAATTTGTAAAATATAATAATATTTTGTTTATTTT
66 TAAGCATATTGTAATAGTTACACAAGTTAATAATTTATAAAATATAATAATATTTTATTTATTTT
*
8006349 ATAATAAAGTATGATTAAATTATTAAATTAATCATATATTTCTTTATTAGGTAAACCAATTTTTG
131 ATAATAAAATATGATTAAATTATTAAATTAATCATATATTTCTTTATTAGGTAAACCAATTTTTG
8006414 TAATATAAATTATGTAAACAAATATTTGAATTAAAAAATAAAAATAACCTATTAAAATAAAAAAC
196 TAATATAAATTATGTAAACAAATATTTGAATTAAAAAATAAAAATAACCTATTAAAATAAAAAAC
* *
8006479 AACAAGATTATATTATATATAAAACATTAAAAAAATAAAAAAAGTACACAAATTATTTTTGAACC
261 AAAAAGATTATATTATATATAAAACATTAAAAAAATAAAAAAAATACACAAATTATTTTTGAACC
8006544 TATCATTAACATTAATTTGAAAATATAAAAATTTATAATATAAAATAATTACAACTTTAAGAAGA
326 TATCATTAACATTAATTTGAAAATATAAAAATTTATAATATAAAATAATTACAACTTTAAGAAGA
*
8006609 AGCAACTTTTTAATTCACATATTAAATTAGTAATATTGACTATTAATAATTTTATATATCACTTT
391 AACAACTTTTTAATTCACATATTAAATTAGTAATATTGACTATTAATAATTTTATATATCACTTT
* *
8006674 ACTTTGATGATAAAAGTTTCTCACATTTGTGGATGA
456 ACTTTGATAATAAAAGTTTCTCACA-TTGTCGATGA
* * *
8006710 AAACATAACTGTTTTTGGTATTACTAAAACTTAAATATCATTTTATTTAAAAGTACGAAAATAA-
1 AAACATAACTGTATTTGGTATTACTAAAACTCAAATATCATTTTATTTAAAAGTACAAAAATAAC
*
8006774 TCAAGCATATTGTGATAGTTACACAAGTTAATAATTTATAAAATATAATAATATTTTATTTATTT
66 T-AAGCATATTGTAATAGTTACACAAGTTAATAATTTATAAAATATAATAATATTTTATTTATTT
8006839 TATAATAAAATATGATTAAATTATTAAATTAATCATATATTTCTTTATTAGGTAAACCAATTTTT
130 TATAATAAAATATGATTAAATTATTAAATTAATCATATATTTCTTTATTAGGTAAACCAATTTTT
*
8006904 GTAATATAAATTATGTAAACAAATATTTGAATTGAAAAATAAAAATAACCTATTAAAATAAAAAA
195 GTAATATAAATTATGTAAACAAATATTTGAATTAAAAAATAAAAATAACCTATTAAAATAAAAAA
8006969 CAAAAAGATTATATTATATATAAAACATTAAAAAAATAAAAAAAAATACACAAATTATTTTTGAA
260 CAAAAAGATTATATTATATATAAAACATTAAAAAAAT-AAAAAAAATACACAAATTATTTTTGAA
8007034 CCTATCATTAACATTAATTTGAAAATATAAAAATTTATAATATAAAATAATTACAACTTTAAGAA
324 CCTATCATTAACATTAATTTGAAAATATAAAAATTTATAATATAAAATAATTACAACTTTAAGAA
8007099 GAAACAACTTTTTAATTCACATATTAAATTAGTAATATTGACTATTAATAATTTTATATATCACT
389 GAAACAACTTTTTAATTCACATATTAAATTAGTAATATTGACTATTAATAATTTTATATATCACT
*
8007164 TTATTTTGATAAT-AAAGTTTCTCACATTGTCGATGA
454 TTACTTTGATAATAAAAGTTTCTCACATTGTCGATGA
8007200 AAA
1 AAA
8007203 TTAAATTATC
Statistics
Matches: 476, Mismatches: 15, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
490 13 0.03
491 297 0.62
492 166 0.35
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (490 bp):
AAACATAACTGTATTTGGTATTACTAAAACTCAAATATCATTTTATTTAAAAGTACAAAAATAAC
TAAGCATATTGTAATAGTTACACAAGTTAATAATTTATAAAATATAATAATATTTTATTTATTTT
ATAATAAAATATGATTAAATTATTAAATTAATCATATATTTCTTTATTAGGTAAACCAATTTTTG
TAATATAAATTATGTAAACAAATATTTGAATTAAAAAATAAAAATAACCTATTAAAATAAAAAAC
AAAAAGATTATATTATATATAAAACATTAAAAAAATAAAAAAAATACACAAATTATTTTTGAACC
TATCATTAACATTAATTTGAAAATATAAAAATTTATAATATAAAATAATTACAACTTTAAGAAGA
AACAACTTTTTAATTCACATATTAAATTAGTAATATTGACTATTAATAATTTTATATATCACTTT
ACTTTGATAATAAAAGTTTCTCACATTGTCGATGA
Found at i:8008169 original size:23 final size:23
Alignment explanation
Indices: 8008125--8008171 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
8008115 TATGAGTATG
* *
8008125 AAAATATATAATATAAAAATTTT
1 AAAATATAAAATAAAAAAATTTT
8008148 AAAATA-AAAATAAAAAATATTTT
1 AAAATATAAAATAAAAAA-ATTTT
8008171 A
1 A
8008172 TTTGCCCTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (23 bp):
AAAATATAAAATAAAAAAATTTT
Found at i:8008405 original size:8 final size:8
Alignment explanation
Indices: 8008394--8008432 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
8008384 TAATTAATTA
8008394 ATATATTT
1 ATATATTT
*
8008402 ATATAATT
1 ATATATTT
8008410 ATATATTT
1 ATATATTT
*
8008418 AAATATTT
1 ATATATTT
8008426 -TATATTT
1 ATATATTT
8008433 TAAAAAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
7 6 0.22
8 21 0.78
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
ATATATTT
Found at i:8008410 original size:17 final size:16
Alignment explanation
Indices: 8008388--8008455 Score: 52
Period size: 16 Copynumber: 4.3 Consensus size: 16
8008378 ATTAATTAAT
8008388 TAATTAATATATTTATA
1 TAATTAATAT-TTTATA
*
8008405 TAATT-ATATATTTAAA
1 TAATTAATAT-TTTATA
* *
8008421 TATTTTATATTTTA-A
1 TAATTAATATTTTATA
* *
8008436 AAAATAATATTTTAT-
1 TAATTAATATTTTATA
8008451 TAATT
1 TAATT
8008456 TTAAGTCAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
15 14 0.34
16 18 0.44
17 9 0.22
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TAATTAATATTTTATA
Found at i:8008413 original size:16 final size:16
Alignment explanation
Indices: 8008383--8008432 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
8008373 TTTTAATTAA
*
8008383 TTAATTAATTAATATAT
1 TTAAATAATT-ATATAT
*
8008400 TTATATAATTATATAT
1 TTAAATAATTATATAT
*
8008416 TTAAAT-ATTTTATAT
1 TTAAATAATTATATAT
8008431 TT
1 TT
8008433 TAAAAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
15 10 0.34
16 11 0.38
17 8 0.28
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTAAATAATTATATAT
Found at i:8010080 original size:18 final size:18
Alignment explanation
Indices: 8010057--8010092 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
8010047 TGTGCATTAC
8010057 TGTCTCCGGCACGATACT
1 TGTCTCCGGCACGATACT
*
8010075 TGTCTCTGGCACGATACT
1 TGTCTCCGGCACGATACT
8010093 CTTTGAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.17, C:0.31, G:0.22, T:0.31
Consensus pattern (18 bp):
TGTCTCCGGCACGATACT
Found at i:8021781 original size:11 final size:11
Alignment explanation
Indices: 8021765--8021855 Score: 55
Period size: 11 Copynumber: 8.1 Consensus size: 11
8021755 TTGATGGAAG
8021765 TTATGGATGTT
1 TTATGGATGTT
8021776 TTATGGATGGATATT
1 TTATGGAT-G---TT
*
8021791 TTAT-GATGTG
1 TTATGGATGTT
8021801 TTATGGATG--
1 TTATGGATGTT
*
8021810 CTATGGATGTT
1 TTATGGATGTT
* *
8021821 TTATGAATATT
1 TTATGGATGTT
*
8021832 TTAT-AATGTAT
1 TTATGGATGT-T
8021843 TTGATGGATGTT
1 TT-ATGGATGTT
8021855 T
1 T
8021856 GATAGACGTT
Statistics
Matches: 63, Mismatches: 7, Indels: 19
0.71 0.08 0.21
Matches are distributed among these distances:
9 8 0.13
10 9 0.14
11 27 0.43
12 5 0.08
13 5 0.08
14 3 0.05
15 6 0.10
ACGTcount: A:0.24, C:0.01, G:0.24, T:0.51
Consensus pattern (11 bp):
TTATGGATGTT
Found at i:8021958 original size:19 final size:19
Alignment explanation
Indices: 8021929--8021974 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
8021919 TGTTTAAATT
8021929 ATAATTTACAGGTTTTTTAA
1 ATAA-TTACAGGTTTTTTAA
*
8021949 ATAATTACAGGTTTTTTGA
1 ATAATTACAGGTTTTTTAA
8021968 ATAATTA
1 ATAATTA
8021975 TAAAATATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 21 0.84
20 4 0.16
ACGTcount: A:0.37, C:0.04, G:0.11, T:0.48
Consensus pattern (19 bp):
ATAATTACAGGTTTTTTAA
Found at i:8023283 original size:23 final size:23
Alignment explanation
Indices: 8023251--8023299 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
8023241 AATACAAAAT
8023251 TTTAAAAATAAAATATGA-TTTTA
1 TTTAAAAATAAAATAT-ATTTTTA
* *
8023274 TTTAACAATAATATATATTTTTA
1 TTTAAAAATAAAATATATTTTTA
8023297 TTT
1 TTT
8023300 TTATATTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 1 0.04
23 22 0.96
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (23 bp):
TTTAAAAATAAAATATATTTTTA
Found at i:8024520 original size:13 final size:14
Alignment explanation
Indices: 8024502--8024540 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 14
8024492 AATAAAAAAC
8024502 TTTATG-AATTTTA
1 TTTATGAAATTTTA
8024515 TTTATGAAATTTTA
1 TTTATGAAATTTTA
8024529 --TAT-AAATTTTA
1 TTTATGAAATTTTA
8024540 T
1 T
8024541 CCATGGGAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 8 0.33
12 3 0.12
13 6 0.25
14 7 0.29
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (14 bp):
TTTATGAAATTTTA
Found at i:8028858 original size:4 final size:4
Alignment explanation
Indices: 8028849--8028892 Score: 54
Period size: 4 Copynumber: 10.8 Consensus size: 4
8028839 AAATATTTAA
*
8028849 AAAT AAAT AAAT AAAT AGAT AAAT AAAAT AAAT ATAA- AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT A-AAT AAAT AAA
8028893 AATACTAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
3 2 0.06
4 27 0.77
5 6 0.17
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:8028879 original size:17 final size:17
Alignment explanation
Indices: 8028851--8028893 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
8028841 ATATTTAAAA
8028851 ATAAAT-AAATAAATAG
1 ATAAATAAAATAAATAG
*
8028867 ATAAATAAAATAAATAT
1 ATAAATAAAATAAATAG
*
8028884 AAAAATAAAA
1 ATAAATAAAA
8028894 ATACTAAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (17 bp):
ATAAATAAAATAAATAG
Found at i:8036875 original size:21 final size:21
Alignment explanation
Indices: 8036830--8036885 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
8036820 CAACTGCTAA
8036830 AATTTTACACGTTCTTGATTC
1 AATTTTACACGTTCTTGATTC
* *
8036851 -ATTTTAGCATGTTCTT-TTTC
1 AATTTTA-CACGTTCTTGATTC
8036871 AATTTTAACACGTTC
1 AATTTT-ACACGTTC
8036886 ATGTTCTCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 9 0.31
21 19 0.66
22 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.09, T:0.50
Consensus pattern (21 bp):
AATTTTACACGTTCTTGATTC
Found at i:8038316 original size:161 final size:159
Alignment explanation
Indices: 8037637--8038389 Score: 681
Period size: 161 Copynumber: 4.7 Consensus size: 159
8037627 TCATTTTGAC
* *** *
8037637 AAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAACATGGTGAATAATAGCAACTTTGT
1 AAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATA-GAACAATAATAGCAAATTTGT
* * * * ** * * * *
8037702 ATTTTTGCCTTTTAACGACAAAAAAAGTCCTAAACAAAGGT-AATCAACAACTTTGTCATATATA
65 ATTTTTACC-TTTAACGGCACAAAAAGT-CTAAACAGACATAAAT-AATAACTTTTTCACACATA
*
8037766 TCAATTGTGAAAACTAAGTTCAATCATTCGAAA
127 TCAACTGTGAAAACTAAGTTCAATCATTCGAAA
* * * * * * *
8037799 AAGTTTAATAGCATGTATTGAAGTTATCCAAATTGCTAAAACAAAACAATAATAGCATATTTGTA
1 AAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTA
* * ** * * *
8037864 TTTTTGA-CTTTAAC-GAACCGAAAAATTCTAAACAGAGGTAAATAGTAGCTTTTTCACATATAT
66 TTTTT-ACCTTTAACGGCA-C-AAAAAGTCTAAACAGACATAAATAATAACTTTTTCACACATAT
** * *
8037927 CAACTGCAAAAACAAAGTTCAATCATTCAAAA
128 CAACTGTGAAAACTAAGTTCAATCATTCGAAA
* * * * * *
8037959 AAGTTTAATATCATGTTTTGAAG-TCATCCAAACTGTTAAAATAAAATAATAACAACAAATTTAT
1 AAGTTTAATATCATGTATTGAAGCT-ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGT
* * * *
8038023 ACTTTTACATTTTAACGGCA-AAAATAGTCTTAAATAGACATAAATGATAACTTTTTCACACATA
65 ATTTTTAC-CTTTAACGGCACAAAA-AGTC-TAAACAGACATAAATAATAACTTTTTCACACATA
* * * * * *
8038087 TCAATTGTGGAAACCAAGTTTAATCATTCGTAT
127 TCAACTGTGAAAACTAAGTTCAATCATTCGAAA
* * *
8038120 AAGTTTAATATCATATATTGGAGCTATCCAAACTATTAAAATAGAACAATAATAGCAAATTTGTA
1 AAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTA
* *
8038185 TTATTACCTATTAACGGCACAAAAAGTCATAAACAGACATAAATAATAACTTTTTCATACATATC
66 TTTTTACCT-TTAACGGCACAAAAAGTC-TAAACAGACATAAATAATAACTTTTTCACACATATC
* * * * *
8038250 AACCGTGAAAACTAAGTTCAATAATTTGGAT
129 AACTGTGAAAACTAAGTTCAATCATTCGAAA
* * * * * * *
8038281 AAGTTTAATATCATATATTGAAACTATCAAAACTATTGAAATAGAACAATAACTA-TAAATTTGC
1 AAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAA-TAGCAAATTTGT
* * * *
8038345 ATTTTTACCTTGTAATGGTACAAAAAGTTGTAAACATACATAAAT
65 ATTTTTACCTT-TAACGGCACAAAAAG-TCTAAACAGACATAAAT
8038390 CGCAAATTAC
Statistics
Matches: 484, Mismatches: 91, Indels: 33
0.80 0.15 0.05
Matches are distributed among these distances:
159 7 0.01
160 121 0.25
161 307 0.63
162 49 0.10
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.32
Consensus pattern (159 bp):
AAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGAACAATAATAGCAAATTTGTA
TTTTTACCTTTAACGGCACAAAAAGTCTAAACAGACATAAATAATAACTTTTTCACACATATCAA
CTGTGAAAACTAAGTTCAATCATTCGAAA
Found at i:8041799 original size:21 final size:21
Alignment explanation
Indices: 8041775--8041818 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
8041765 CCTCATTACT
8041775 TTAAACATCAAGATCACCAAC
1 TTAAACATCAAGATCACCAAC
** **
8041796 TTAAGTATCATTATCACCAAC
1 TTAAACATCAAGATCACCAAC
8041817 TT
1 TT
8041819 GAGTAATGGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.30
Consensus pattern (21 bp):
TTAAACATCAAGATCACCAAC
Found at i:8044488 original size:65 final size:66
Alignment explanation
Indices: 8044419--8044566 Score: 153
Period size: 63 Copynumber: 2.3 Consensus size: 66
8044409 TTTAACAGAG
* * *
8044419 AATTATTAAAAGTATTTTTTTTGTCATAAA-TGCCTTTAATAAT-CCTTTGAAATTTTTTGA-AA
1 AATTATTAAAAGTATTTTTTTTG-CAGAAATTGCCTTCAATAATCCCCTT-AAATTTTTTGATAA
8044481 AAA
64 AAA
* * * * * *
8044484 AATTATTGAAGGCA--TTTTTTGCAGAAATTGCCTTCAATAATCCCCTTCAATTTTTTTATCAAA
1 AATTATTAAAAGTATTTTTTTTGCAGAAATTGCCTTCAATAATCCCCTTAAATTTTTTGATAAAA
8044547 A
66 A
8044548 AATTATTAAAAGTGATTTT
1 AATTATTAAAAGT-ATTTT
8044567 GACTAAAAAT
Statistics
Matches: 65, Mismatches: 12, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
62 5 0.08
63 28 0.43
64 18 0.28
65 12 0.18
67 2 0.03
ACGTcount: A:0.36, C:0.11, G:0.09, T:0.44
Consensus pattern (66 bp):
AATTATTAAAAGTATTTTTTTTGCAGAAATTGCCTTCAATAATCCCCTTAAATTTTTTGATAAAA
A
Found at i:8044716 original size:63 final size:63
Alignment explanation
Indices: 8044639--8044830 Score: 194
Period size: 62 Copynumber: 3.1 Consensus size: 63
8044629 TTTTTTGTAG
* * *
8044639 AAAACACCTTCAATAATCCTCTTCAATTTTTTATCAAGGTATTATTGAAAGCGTTTTTAGTTA
1 AAAACGCCTTCAATAATCCTCTTCAATTTTTTATCAAGGAATTATTGAAAGCATTTTTAGTTA
* * * ** * * * *
8044702 CAAATGCCTTCAATAATCCT-TTAAAAATTTT-TGAAGGAATTTATTGAAGGCATTTTTTGCTA
1 AAAACGCCTTCAATAATCCTCTTCAATTTTTTATCAAGGAA-TTATTGAAAGCATTTTTAGTTA
* * *
8044764 AAAACGCCTTCAATAATCC-CTTCTAATTTTTTACCAGGGGATTATT-AAAGACATTTTTAGTTA
1 AAAACGCCTTCAATAATCCTCTTC-AATTTTTTATCAAGGAATTATTGAAAG-CATTTTTAGTTA
8044827 AAAA
1 AAAA
8044831 AAACCCTAAA
Statistics
Matches: 100, Mismatches: 24, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
61 6 0.06
62 48 0.48
63 42 0.42
64 4 0.04
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (63 bp):
AAAACGCCTTCAATAATCCTCTTCAATTTTTTATCAAGGAATTATTGAAAGCATTTTTAGTTA
Found at i:8044726 original size:130 final size:125
Alignment explanation
Indices: 8044256--8044826 Score: 351
Period size: 130 Copynumber: 4.5 Consensus size: 125
8044246 AGGCAAAATG
* * * * *
8044256 CCTTCAATAATCAACTC-T-AATTTTTTATCAGGGGATTATT-GAAGACATTTTCAGTTACAAAC
1 CCTTCAATAATC--CTCTTCAATTTTTTATCAAGGAATTATTAAAAGACATTTTTAGTTACAAAT
* * * * * *
8044318 ACCTTTAATAATTCCCTGAAAA-ATTGTAAAGAAATTATTGAAGGCATTTTTTTTTTTTATAAAA
64 ACCTTCAATAATTCCTTAAAAATATTTTAAA-AAATTATTGAAGGCA------TTTTTTGTAGAA
8044382 AACA
122 AACA
* * * ** * * *
8044386 CCTTCAATAAT-CTCCTTTAATATTTTAAC-AGAGAATTATTAAAAGTATTTTTTTTGTCATAAA
1 CCTTCAATAATCCT-CTTCAATTTTTTATCAAG-GAATTATTAAAAG-ACATTTTTAGTTACAAA
* * ** * * **
8044449 TGCCTTTAATAA-TCCTTTGAAATTTTTTGAAAAAAAATTATTGAAGGCATTTTTTGCAGAAATT
63 TACCTTCAATAATTCCTTAAAAATATTTT---AAAAAATTATTGAAGGCATTTTTTGTAGAAAAC
*
8044513 G
125 A
* ** ** * * *
8044514 CCTTCAATAATCCCCTTCAATTTTTTTATCAAAAAATTATTAAAAGTGATTTTGA-CTAAAAATA
1 CCTTCAATAATCCTCTTCAA-TTTTTTATCAAGGAATTATTAAAAGACATTTTTAGTTACAAATA
** * *
8044578 TATTCAACAATTCCTTAAAAATATTTTCAAAAAATTATTGAATGCATTTTTTTTTTTGTAGAAAA
65 CCTTCAATAATTCCTTAAAAATATTTT-AAAAAATTATTGAAGGCA-----TTTTTTGTAGAAAA
8044643 CA
124 CA
* * * *
8044645 CCTTCAATAATCCTCTTCAATTTTTTATCAAGGTATTATTGAAAG-CGTTTTTAGTTACAAATGC
1 CCTTCAATAATCCTCTTCAATTTTTTATCAAGGAATTATTAAAAGACATTTTTAGTTACAAATAC
* * *
8044709 CTTCAATAA-TCCTTTAAAAAT-TTTTGAAGGAATTTATTGAAGGCATTTTTTGCTA-AAAACG
66 CTTCAATAATTCC-TTAAAAATATTTT-AA-AAAATTATTGAAGGCATTTTTTG-TAGAAAACA
* * *
8044770 CCTTCAATAATCC-CTTCTAATTTTTTACCAGGGGATTATT-AAAGACATTTTTAGTTA
1 CCTTCAATAATCCTCTTC-AATTTTTTATCAAGGAATTATTAAAAGACATTTTTAGTTA
8044827 AAAAAAACCC
Statistics
Matches: 341, Mismatches: 75, Indels: 55
0.72 0.16 0.12
Matches are distributed among these distances:
124 8 0.02
125 55 0.16
126 19 0.06
127 13 0.04
128 44 0.13
129 36 0.11
130 83 0.24
131 41 0.12
132 24 0.07
134 15 0.04
135 3 0.01
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.41
Consensus pattern (125 bp):
CCTTCAATAATCCTCTTCAATTTTTTATCAAGGAATTATTAAAAGACATTTTTAGTTACAAATAC
CTTCAATAATTCCTTAAAAATATTTTAAAAAATTATTGAAGGCATTTTTTGTAGAAAACA
Found at i:8048838 original size:63 final size:64
Alignment explanation
Indices: 8048771--8048912 Score: 141
Period size: 64 Copynumber: 2.2 Consensus size: 64
8048761 TTAATCAAAA
** * *
8048771 CATTTTCTAGCTAAAAATGCCTT-AATAATCCCCT-CCAAAATTTTTTGTA-TGGATTATTGAAA
1 CATTTT-TAGCTAAAAACACCTTCAATAATCCCCTACAAAAATTTATTG-AGTGGATTATTGAAA
8048833 G
64 G
* * * *
8048834 CATTTTTTA-CCAAAAACACCTTCAATAATCCCTTATAAAAATTTATTGAGTGGATTATTGAAGG
1 CA-TTTTTAGCTAAAAACACCTTCAATAATCCCCTACAAAAATTTATTGAGTGGATTATTGAAAG
*
8048898 TATTTTTAG-TAAAAA
1 CATTTTTAGCTAAAAA
8048913 ACGCTTTTAG
Statistics
Matches: 64, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
62 10 0.16
63 26 0.41
64 28 0.44
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.38
Consensus pattern (64 bp):
CATTTTTAGCTAAAAACACCTTCAATAATCCCCTACAAAAATTTATTGAGTGGATTATTGAAAG
Found at i:8049494 original size:61 final size:63
Alignment explanation
Indices: 8049343--8049498 Score: 169
Period size: 63 Copynumber: 2.5 Consensus size: 63
8049333 AATTACCTCT
* * * * *
8049343 ATTTTTTATGAG-GGAATTATTCAAGGCGTTGTTAGCCAAAAATGCCTTCAATAATCCCTTATCC
1 ATTTTTTA-GAGAGG-ATTATTCAAGGTGTTTTTAGCCAAAAATACCTTCAATAATCACTTATCA
* *
8049407 ATTTTTTTGA-AGGGATTATTCAAGGTGTTTTCTA-CCAAAAATACCTTTAATAATCAC-TAT-A
1 ATTTTTTAGAGA-GGATTATTCAAGGTGTTTT-TAGCCAAAAATACCTTCAATAATCACTTATCA
*
8049468 ATTTTTTAGAGAGGATTAATCAAGGTGTTTT
1 ATTTTTTAGAGAGGATTATTCAAGGTGTTTT
8049499 AGTCGATAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 11
0.80 0.09 0.11
Matches are distributed among these distances:
61 27 0.34
62 4 0.05
63 37 0.47
64 11 0.14
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.40
Consensus pattern (63 bp):
ATTTTTTAGAGAGGATTATTCAAGGTGTTTTTAGCCAAAAATACCTTCAATAATCACTTATCA
Found at i:8054205 original size:27 final size:27
Alignment explanation
Indices: 8054146--8054205 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
8054136 AAATAAGTTT
* *
8054146 TATTTCCTATAGAATCTAAATAATCTC
1 TATTTTCTATAAAATCTAAATAATCTC
8054173 TATTTTCTATAAAATCTAAATAATCTC
1 TATTTTCTATAAAATCTAAATAATCTC
8054200 TATTTT
1 TATTTT
8054206 TTGTTGCAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.37, C:0.15, G:0.02, T:0.47
Consensus pattern (27 bp):
TATTTTCTATAAAATCTAAATAATCTC
Found at i:8059154 original size:28 final size:29
Alignment explanation
Indices: 8059104--8059162 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
8059094 GAGATTTTTT
*
8059104 TAAAAAATTTAATTTAATAAAAATTTTAA
1 TAAAAAATTTAAATTAATAAAAATTTTAA
* *
8059133 TAAAAACTTTAAATTGAT-AAAATTTTAA
1 TAAAAAATTTAAATTAATAAAAATTTTAA
8059161 TA
1 TA
8059163 TGAAAATTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (29 bp):
TAAAAAATTTAAATTAATAAAAATTTTAA
Found at i:8059264 original size:14 final size:13
Alignment explanation
Indices: 8059238--8059298 Score: 53
Period size: 11 Copynumber: 5.0 Consensus size: 13
8059228 AAATTTTATT
8059238 AATAGTTTATTAAA
1 AATA-TTTATTAAA
8059252 AATATTTATTTAAA
1 AATATTTA-TTAAA
*
8059266 AA-ATATATT-AA
1 AATATTTATTAAA
8059277 AATA--TATTAAA
1 AATATTTATTAAA
8059288 AAT-TTT-TTAAA
1 AATATTTATTAAA
8059299 TTTAATAAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 13
0.75 0.02 0.24
Matches are distributed among these distances:
10 4 0.10
11 14 0.34
12 4 0.10
13 8 0.20
14 11 0.27
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (13 bp):
AATATTTATTAAA
Found at i:8062537 original size:21 final size:22
Alignment explanation
Indices: 8062513--8062554 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8062503 GGTGTTCTAA
8062513 ATACACC-ACAAAATCTTTTTT
1 ATACACCTACAAAATCTTTTTT
* *
8062534 ATACACCTTCAAAATGTTTTT
1 ATACACCTACAAAATCTTTTT
8062555 CCAAAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.36, C:0.21, G:0.02, T:0.40
Consensus pattern (22 bp):
ATACACCTACAAAATCTTTTTT
Found at i:8062747 original size:34 final size:34
Alignment explanation
Indices: 8062708--8062775 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
8062698 TTTCTAGAAC
* * * * *
8062708 AAAATATAATTTTTGAAAATCTTTTTCTCAAAAT
1 AAAATAAAACTTTCGAAAATCTATTTCTAAAAAT
8062742 AAAATAAAACTTTCGAAAATCTATTTCTAAAAAT
1 AAAATAAAACTTTCGAAAATCTATTTCTAAAAAT
8062776 TATAATGTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.49, C:0.10, G:0.03, T:0.38
Consensus pattern (34 bp):
AAAATAAAACTTTCGAAAATCTATTTCTAAAAAT
Found at i:8068190 original size:11 final size:11
Alignment explanation
Indices: 8068160--8068190 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8068150 GTTCTGTGGA
8068160 TTTTTTTTTCT
1 TTTTTTTTTCT
*
8068171 TTCTTTTTTCT
1 TTTTTTTTTCT
8068182 TTTTTTTTT
1 TTTTTTTTT
8068191 GGTATCTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTTCT
Found at i:8069015 original size:52 final size:52
Alignment explanation
Indices: 8068928--8069084 Score: 219
Period size: 52 Copynumber: 3.0 Consensus size: 52
8068918 TGGACAAGAA
* *
8068928 GACTTGCAAAAGAAGAATATC-AAGA-GAAAGAGGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAAT-TCTAAGAGGAAAG-GGATTCTTAATAGGCAAGTTT
*
8068980 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
* * * *
8069032 GACTTACAGGAGAAGAATTCTAAGAGGAGAGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
8069084 G
1 G
8069085 TATGGTTATA
Statistics
Matches: 95, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
51 2 0.02
52 88 0.93
53 5 0.05
ACGTcount: A:0.39, C:0.09, G:0.27, T:0.25
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
Found at i:8070453 original size:14 final size:14
Alignment explanation
Indices: 8070431--8070465 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
8070421 GTTAATTGGT
*
8070431 TATGTTTTCTCACA
1 TATGCTTTCTCACA
8070445 TATGCTTTCTCACA
1 TATGCTTTCTCACA
8070459 TATGCTT
1 TATGCTT
8070466 CCTTGGCTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.20, C:0.23, G:0.09, T:0.49
Consensus pattern (14 bp):
TATGCTTTCTCACA
Found at i:8073654 original size:22 final size:22
Alignment explanation
Indices: 8073626--8073694 Score: 79
Period size: 22 Copynumber: 3.1 Consensus size: 22
8073616 TTAATCATAC
8073626 AATCACACAAATAAATATATAT
1 AATCACACAAATAAATATATAT
8073648 AATCACACAAATAACA-ATATA-
1 AATCACACAAATAA-ATATATAT
** *
8073669 AATCATGCAATTAAATATATAAT
1 AATCACACAAATAAATATAT-AT
8073692 AAT
1 AAT
8073695 GCAATTAACA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
20 1 0.03
21 15 0.38
22 20 0.50
23 4 0.10
ACGTcount: A:0.58, C:0.13, G:0.01, T:0.28
Consensus pattern (22 bp):
AATCACACAAATAAATATATAT
Found at i:8073704 original size:41 final size:41
Alignment explanation
Indices: 8073633--8073941 Score: 351
Period size: 41 Copynumber: 7.6 Consensus size: 41
8073623 TACAATCACA
** * *
8073633 CAAATAAATATATATAATCACACAAATAACAATATAAATCATG
1 CAAAT-AA-ATATATAATCATGCAATTAACAATATAAAACATG
* * *
8073676 CAATTAAATATATAATAATGCAATTAACAATATAAATCATG
1 CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
*
8073717 CAAATAAATATATAATCATGCAATTAACAACATAAAACATG
1 CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
* * *
8073758 CAATTAAATATATAATCAAGTAATTAACAATATAAAACATG
1 CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
* * * * *
8073799 TAATTAAATATATTATCATGCAGTTAACAATATAAAACATA
1 CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
*
8073840 CAAATAAATATAT--T-ATGCAATTAACGATATAAAACATG
1 CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
* * *
8073878 CAAATAAATATATTATCATGCAATTAA-ATATATAATA-ATA
1 CAAATAAATATATAATCATGCAATTAACA-ATATAAAACATG
8073918 CAAAT-AATAATATAAATCATGCAA
1 CAAATAAAT-ATAT-AATCATGCAA
8073942 ATAAACATGC
Statistics
Matches: 232, Mismatches: 28, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
38 34 0.15
39 4 0.02
40 12 0.05
41 176 0.76
42 2 0.01
43 4 0.02
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (41 bp):
CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
Found at i:8074015 original size:20 final size:20
Alignment explanation
Indices: 8073990--8074082 Score: 87
Period size: 20 Copynumber: 4.6 Consensus size: 20
8073980 CTATACAAAT
*
8073990 AAATAAATTGATAATCATGC
1 AAATAAATTAATAATCATGC
*
8074010 AAATAAATTAATAATCATGT
1 AAATAAATTAATAATCATGC
** * *
8074030 AAGCATATTAATAGTCATGC
1 AAATAAATTAATAATCATGC
* **
8074050 AAATATATTAATAAATCACAC
1 AAATAAATTAAT-AATCATGC
*
8074071 AAATATATTAAT
1 AAATAAATTAAT
8074083 CATATAAATA
Statistics
Matches: 60, Mismatches: 12, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
20 43 0.72
21 17 0.28
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (20 bp):
AAATAAATTAATAATCATGC
Found at i:8074122 original size:16 final size:18
Alignment explanation
Indices: 8074103--8074143 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
8074093 AACTATTAGA
8074103 CAAATAA-ATTA-TCATG
1 CAAATAATATTAGTCATG
8074119 CAAATATAATATTAGTCATG
1 C-AA-ATAATATTAGTCATG
8074139 CAAAT
1 CAAAT
8074144 TCATGCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
16 1 0.05
17 2 0.10
18 6 0.29
19 6 0.29
20 6 0.29
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (18 bp):
CAAATAATATTAGTCATG
Found at i:8074124 original size:32 final size:33
Alignment explanation
Indices: 8074069--8074133 Score: 80
Period size: 32 Copynumber: 2.0 Consensus size: 33
8074059 AATAAATCAC
* *
8074069 ACAAATATATTAATCATATAAATA-AACTATTAG
1 ACAAATAAATTAATCATACAAATATAA-TATTAG
*
8074102 ACAAATAAATT-ATCATGCAAATATAATATTAG
1 ACAAATAAATTAATCATACAAATATAATATTAG
8074134 TCATGCAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.54, C:0.09, G:0.05, T:0.32
Consensus pattern (33 bp):
ACAAATAAATTAATCATACAAATATAATATTAG
Found at i:8074139 original size:20 final size:18
Alignment explanation
Indices: 8074106--8074143 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
8074096 TATTAGACAA
8074106 ATAAATTATCATGCAAAT
1 ATAAATTATCATGCAAAT
8074124 ATAATATTAGTCATGCAAAT
1 ATAA-ATTA-TCATGCAAAT
8074144 TCATGCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (18 bp):
ATAAATTATCATGCAAAT
Found at i:8075221 original size:2 final size:2
Alignment explanation
Indices: 8075216--8075243 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8075206 AGTTGTGTGC
8075216 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8075244 CAAACACACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8076541 original size:2 final size:2
Alignment explanation
Indices: 8076534--8076565 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8076524 ATTTTTCACT
8076534 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8076566 GAGAGAGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8077757 original size:10 final size:10
Alignment explanation
Indices: 8077702--8077785 Score: 68
Period size: 10 Copynumber: 8.3 Consensus size: 10
8077692 CCAAACTGCA
8077702 TTTAAAATTTT
1 TTTAAAA-TTT
8077713 TTTAAAAAATTT
1 TTT--AAAATTT
*
8077725 TTTAGAAATCT
1 TTTA-AAATTT
8077736 TTTAGAAA-TT
1 TTTA-AAATTT
8077746 TTTAAAATTT
1 TTTAAAATTT
*
8077756 TTTGAAA-TT
1 TTTAAAATTT
8077765 TTT-AAA-TT
1 TTTAAAATTT
*
8077773 TTTACAATTT
1 TTTAAAATTT
8077783 TTT
1 TTT
8077786 TTGAAATTTT
Statistics
Matches: 63, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
8 8 0.13
9 10 0.16
10 19 0.30
11 16 0.25
12 6 0.10
13 4 0.06
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (10 bp):
TTTAAAATTT
Found at i:8077762 original size:19 final size:19
Alignment explanation
Indices: 8077723--8077862 Score: 88
Period size: 18 Copynumber: 7.2 Consensus size: 19
8077713 TTTAAAAAAT
8077723 TTTTTAGAAATCTTTTAGAAA
1 TTTTTA-AAAT-TTTTAGAAA
*
8077744 TTTTTAAAATTTTTTGAAA
1 TTTTTAAAATTTTTAGAAA
* *
8077763 TTTTT-AAATTTTTACAATTT
1 TTTTTAAAATTTTTAGAA--A
* * *
8077783 TTTTTGAAATTTTAAAAAA
1 TTTTTAAAATTTTTAGAAA
* * *
8077802 TATTT-AATTTTTTATAAA
1 TTTTTAAAATTTTTAGAAA
*
8077820 TTTTAAAAAATTTTTAGAAAA
1 TTTT-TAAAATTTTTAG-AAA
** *
8077841 TTTCAAAAAATTTTA-AAA
1 TTTTTAAAATTTTTAGAAA
8077859 TTTT
1 TTTT
8077863 CTAGAAAATT
Statistics
Matches: 95, Mismatches: 18, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
18 29 0.31
19 17 0.18
20 27 0.28
21 22 0.23
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (19 bp):
TTTTTAAAATTTTTAGAAA
Found at i:8077768 original size:29 final size:30
Alignment explanation
Indices: 8077718--8077858 Score: 121
Period size: 31 Copynumber: 4.8 Consensus size: 30
8077708 ATTTTTTTAA
* *
8077718 AAAATTTTTTAGAAATCTTTTAGAAATTTTT
1 AAAATTTTTTAGAAAT-TTTAAAAAATTTTT
*
8077749 AAAATTTTTT-GAAATTTT--TAAATTTTT
1 AAAATTTTTTAGAAATTTTAAAAAATTTTT
* * *
8077776 ACAATTTTTTTTGAAATTTTAAAAAATATTT
1 A-AAATTTTTTAGAAATTTTAAAAAATTTTT
*
8077807 --AATTTTTTATAAATTTTAAAAAATTTTT
1 AAAATTTTTTAGAAATTTTAAAAAATTTTT
* ** *
8077835 AGAAAATTTCAAAAAATTTTAAAA
1 A-AAATTTTTTAGAAATTTTAAAA
8077859 TTTTCTAGAA
Statistics
Matches: 91, Mismatches: 12, Indels: 14
0.78 0.10 0.12
Matches are distributed among these distances:
27 9 0.10
28 32 0.35
29 11 0.12
30 5 0.05
31 34 0.37
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (30 bp):
AAAATTTTTTAGAAATTTTAAAAAATTTTT
Found at i:8077795 original size:10 final size:10
Alignment explanation
Indices: 8077719--8077795 Score: 61
Period size: 9 Copynumber: 7.7 Consensus size: 10
8077709 TTTTTTTAAA
8077719 AAATTTTTTAG
1 AAATTTTTT-G
*
8077730 AAATCTTTTAG
1 AAAT-TTTTTG
*
8077741 AAA-TTTTTA
1 AAATTTTTTG
8077750 AAATTTTTTG
1 AAATTTTTTG
8077760 AAA-TTTTT-
1 AAATTTTTTG
**
8077768 AAATTTTTAC
1 AAATTTTTTG
*
8077778 AATTTTTTTTG
1 AA-ATTTTTTG
8077789 AAATTTT
1 AAATTTT
8077796 AAAAAATATT
Statistics
Matches: 52, Mismatches: 9, Indels: 11
0.72 0.12 0.15
Matches are distributed among these distances:
8 3 0.06
9 16 0.31
10 14 0.27
11 15 0.29
12 4 0.08
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (10 bp):
AAATTTTTTG
Found at i:8077807 original size:11 final size:10
Alignment explanation
Indices: 8077789--8077858 Score: 56
Period size: 10 Copynumber: 7.1 Consensus size: 10
8077779 ATTTTTTTTG
8077789 AAATTTTAAA
1 AAATTTTAAA
8077799 AAATATTT--A
1 AAAT-TTTAAA
** *
8077808 ATTTTTTATA
1 AAATTTTAAA
8077818 -AATTTTAAA
1 AAATTTTAAA
*
8077827 AAATTTTTAGA
1 AAA-TTTTAAA
*
8077838 AAATTTCAAA
1 AAATTTTAAA
8077848 AAATTTTAAA
1 AAATTTTAAA
8077858 A
1 A
8077859 TTTTCTAGAA
Statistics
Matches: 46, Mismatches: 9, Indels: 10
0.71 0.14 0.15
Matches are distributed among these distances:
8 3 0.07
9 9 0.20
10 22 0.48
11 12 0.26
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (10 bp):
AAATTTTAAA
Found at i:8077812 original size:28 final size:29
Alignment explanation
Indices: 8077778--8077835 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
8077768 AAATTTTTAC
8077778 AATTTTTTT-TGAAATTTTAAAAAATATTT
1 AATTTTTTTAT-AAATTTTAAAAAATATTT
*
8077807 AA-TTTTTTATAAATTTTAAAAAATTTTT
1 AATTTTTTTATAAATTTTAAAAAATATTT
8077835 A
1 A
8077836 GAAAATTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 24 0.89
29 3 0.11
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (29 bp):
AATTTTTTTATAAATTTTAAAAAATATTT
Found at i:8077831 original size:21 final size:22
Alignment explanation
Indices: 8077807--8077854 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
8077797 AAAAATATTT
* *
8077807 AATTTTTTA-TAAATTTTAAAA
1 AATTTTTTAGAAAATTTCAAAA
8077828 AA-TTTTTAGAAAATTTCAAAA
1 AATTTTTTAGAAAATTTCAAAA
8077849 AATTTT
1 AATTTT
8077855 AAAATTTTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 6 0.26
21 14 0.61
22 3 0.13
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
AATTTTTTAGAAAATTTCAAAA
Found at i:8077835 original size:20 final size:19
Alignment explanation
Indices: 8077810--8077862 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
8077800 AATATTTAAT
8077810 TTTTTATAAATTTTAAAAAA
1 TTTTTA-AAATTTTAAAAAA
*
8077830 TTTTTAGAAAATTTCAAAAAA
1 TTTTT--AAAATTTTAAAAAA
8077851 -TTTTAAAATTTT
1 TTTTTAAAATTTT
8077863 CTAGAAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
18 7 0.24
20 9 0.31
21 12 0.41
22 1 0.03
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (19 bp):
TTTTTAAAATTTTAAAAAA
Found at i:8079503 original size:28 final size:26
Alignment explanation
Indices: 8079462--8079530 Score: 66
Period size: 28 Copynumber: 2.4 Consensus size: 26
8079452 AGATTTTTTT
8079462 TAAAAACAGTTAAATTAATAAAAATTTTAA
1 TAAAAA-A-TTAAATTAAT-AAAA-TTTAA
*
8079492 TAAAAAATTAAAATTGATAAAATTTAA
1 TAAAAAATT-AAATTAATAAAATTTAA
*
8079519 TATGAAAATTAA
1 TA-AAAAATTAA
8079531 TACTATATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
27 9 0.26
28 12 0.34
29 8 0.23
30 6 0.17
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (26 bp):
TAAAAAATTAAATTAATAAAATTTAA
Found at i:8079505 original size:29 final size:28
Alignment explanation
Indices: 8079473--8079530 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
8079463 AAAAACAGTT
8079473 AAATTAATAAAAATTTTAATA-AAAAATTA
1 AAATTAAT-AAAA-TTTAATATAAAAATTA
* *
8079502 AAATTGATAAAATTTAATATGAAAATTA
1 AAATTAATAAAATTTAATATAAAAATTA
8079530 A
1 A
8079531 TACTATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 7 0.27
28 12 0.46
29 7 0.27
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (28 bp):
AAATTAATAAAATTTAATATAAAAATTA
Found at i:8079616 original size:15 final size:14
Alignment explanation
Indices: 8079596--8079645 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
8079586 AAAGTTTATT
*
8079596 AATATTTTTATTAAA
1 AATATTTAT-TTAAA
8079611 AATATTTATTTAAA
1 AATATTTATTTAAA
*
8079625 AA-ATATA-TTAAA
1 AATATTTATTTAAA
8079637 ATATATTTA
1 A-ATATTTA
8079646 AATTTTTTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 6 0.20
13 5 0.17
14 11 0.37
15 8 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATATTTATTTAAA
Found at i:8079620 original size:13 final size:13
Alignment explanation
Indices: 8079602--8079645 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
8079592 TATTAATATT
8079602 TTTATTAAAAATA
1 TTTATTAAAAATA
8079615 TTTATTTAAAAA-A
1 TTTA-TTAAAAATA
*
8079628 TATATTAAAATATA
1 TTTATTAAAA-ATA
8079642 TTTA
1 TTTA
8079646 AATTTTTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
12 6 0.23
13 9 0.35
14 11 0.42
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTTATTAAAAATA
Found at i:8079725 original size:21 final size:21
Alignment explanation
Indices: 8079685--8079726 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8079675 ATGTGATGAG
*
8079685 ATTTTTAATTAATTAATTTTA
1 ATTTTTAATTAATCAATTTTA
* *
8079706 ATTTTTATTTAATCATTTTTA
1 ATTTTTAATTAATCAATTTTA
8079727 GTAAAAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTTTAATTAATCAATTTTA
Found at i:8080021 original size:28 final size:28
Alignment explanation
Indices: 8079961--8080021 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
8079951 AGTTAAAGAC
* *
8079961 AATTCAATTTAATTATATAGAAAATTTT
1 AATTAAATTTAATTATATAGAAAATTAT
8079989 AATTAAATTTAATTATATA-AAAATTAT
1 AATTAAATTTAATTATATAGAAAATTAT
8080016 ATATTA
1 A-ATTA
8080022 TAAGTTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 8 0.27
28 22 0.73
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (28 bp):
AATTAAATTTAATTATATAGAAAATTAT
Found at i:8081498 original size:40 final size:39
Alignment explanation
Indices: 8081453--8081531 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 39
8081443 TTTTTTTTAG
8081453 ATATTTAGATTTAAAATATAAGAACATGAAATTTTATGTT
1 ATATTTAGATTTAAAATATAAGAACATGAAA-TTTATGTT
*
8081493 ATATTTAGATTTAAAATGTAAGAACATGAAATTTATGTT
1 ATATTTAGATTTAAAATATAAGAACATGAAATTTATGTT
8081532 CTGATGAATT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 8 0.21
40 30 0.79
ACGTcount: A:0.44, C:0.03, G:0.11, T:0.42
Consensus pattern (39 bp):
ATATTTAGATTTAAAATATAAGAACATGAAATTTATGTT
Found at i:8084396 original size:15 final size:15
Alignment explanation
Indices: 8084378--8084409 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8084368 TAAATTAATA
8084378 ATCATGCAATTAGAC
1 ATCATGCAATTAGAC
8084393 ATCATGCAATTAGAC
1 ATCATGCAATTAGAC
8084408 AT
1 AT
8084410 GCAATTAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (15 bp):
ATCATGCAATTAGAC
Found at i:8084412 original size:12 final size:14
Alignment explanation
Indices: 8084377--8084416 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
8084367 ATAAATTAAT
8084377 AATCATGCAATTAG
1 AATCATGCAATTAG
8084391 ACATCATGCAATTAG
1 A-ATCATGCAATTAG
8084406 -A-CATGCAATTA
1 AATCATGCAATTA
8084417 AATATATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.40
13 1 0.04
14 1 0.04
15 13 0.52
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.28
Consensus pattern (14 bp):
AATCATGCAATTAG
Found at i:8084457 original size:21 final size:20
Alignment explanation
Indices: 8084432--8084618 Score: 105
Period size: 20 Copynumber: 9.1 Consensus size: 20
8084422 ATAATCACAT
*
8084432 AATTAACAATGTCAAACATGT
1 AATTAACAATGT-AAACATGC
* *
8084453 AATTAA-ATATTTAATCATGC
1 AATTAACA-ATGTAAACATGC
8084473 AATTAACAATGTAAAACATGC
1 AATTAACAATGT-AAACATGC
* *
8084494 AAATAA-ATATATAAACATGC
1 AATTAACA-ATGTAAACATGC
* * *
8084514 AATTAACAATATAAATTATCC
1 AATTAACAATGTAAA-CATGC
* * *
8084535 AAATAA-ATATATAATCATGC
1 AATTAACA-ATGTAAACATGC
*
8084555 AATTAACAATATAAAACATGC
1 AATTAACAATGT-AAACATGC
* * *
8084576 AAATAAATAAAT-T-ATCATGC
1 -AATTAA-CAATGTAAACATGC
*
8084596 AATTAACAATATAAAACATGC
1 AATTAACAATGT-AAACATGC
8084617 AA
1 AA
8084619 AAAAAATATT
Statistics
Matches: 130, Mismatches: 22, Indels: 28
0.72 0.12 0.16
Matches are distributed among these distances:
18 3 0.02
19 6 0.05
20 56 0.43
21 56 0.43
22 6 0.05
23 3 0.02
ACGTcount: A:0.54, C:0.12, G:0.05, T:0.28
Consensus pattern (20 bp):
AATTAACAATGTAAACATGC
Found at i:8084457 original size:41 final size:41
Alignment explanation
Indices: 8084406--8084668 Score: 196
Period size: 41 Copynumber: 6.5 Consensus size: 41
8084396 ATGCAATTAG
*
8084406 ACATGCAATTAAATATATAATCACATAATTAACAATGTCAA
1 ACATGCAATTAAATATATAATCACATAATTAACAATGTAAA
* * ***
8084447 ACATGTAATTAAATATTTAATCATGCAATTAACAATGTAAA
1 ACATGCAATTAAATATATAATCACATAATTAACAATGTAAA
* *
8084488 ACATGCAAATAAATATATAA--ACATGCAATTAACAATATAAA
1 ACATGCAATTAAATATATAATCACAT--AATTAACAATGTAAA
** * * *** *
8084529 TTATCCAAATAAATATATAATCATGCAATTAACAATATAAA
1 ACATGCAATTAAATATATAATCACATAATTAACAATGTAAA
* * * *** *
8084570 ACATGCAAATAAATAAATTATCATGCAATTAACAATATAAA
1 ACATGCAATTAAATATATAATCACATAATTAACAATGTAAA
* * * * *
8084611 ACATGCAA-AAAAAATATTAT-GC--AATTAACAATATAAA
1 ACATGCAATTAAATATATAATCACATAATTAACAATGTAAA
* *
8084648 ATATGCAAATAAATATATAAT
1 ACATGCAATTAAATATATAAT
8084669 AATAATCATG
Statistics
Matches: 184, Mismatches: 33, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
37 22 0.12
38 9 0.05
39 1 0.01
40 9 0.05
41 142 0.77
43 1 0.01
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (41 bp):
ACATGCAATTAAATATATAATCACATAATTAACAATGTAAA
Found at i:8084518 original size:82 final size:80
Alignment explanation
Indices: 8084406--8084667 Score: 309
Period size: 82 Copynumber: 3.2 Consensus size: 80
8084396 ATGCAATTAG
* * * *
8084406 ACATGCAATTAAATATATAATCACAT--AATTAACAATGTCAAACATGTAATTAAATATTTAATC
1 ACATGCAAATAAATATATAA--ACATGCAATTAACAATAT-AAACATGCAA-TAAATATATAATC
*
8084469 ATGCAATTAACAATGTAAA
62 ATGCAATTAACAATATAAA
* *
8084488 ACATGCAAATAAATATATAAACATGCAATTAACAATATAAATTATCCAAATAAATATATAATCAT
1 ACATGCAAATAAATATATAAACATGCAATTAACAATATAAA-CATGC-AATAAATATATAATCAT
8084553 GCAATTAACAATATAAA
64 GCAATTAACAATATAAA
* * * * *
8084570 ACATGCAAATAAATAAATTATCATGCAATTAACAATATAAAACATGCAA-AAA-AAAT-ATTATG
1 ACATGCAAATAAATATATAAACATGCAATTAACAATAT-AAACATGCAATAAATATATAATCATG
8084632 CAATTAACAATATAAA
65 CAATTAACAATATAAA
*
8084648 ATATGCAAATAAATATATAA
1 ACATGCAAATAAATATATAA
8084668 TAATAATCAT
Statistics
Matches: 158, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
78 38 0.24
79 3 0.02
80 7 0.04
81 5 0.03
82 100 0.63
83 5 0.03
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (80 bp):
ACATGCAAATAAATATATAAACATGCAATTAACAATATAAACATGCAATAAATATATAATCATGC
AATTAACAATATAAA
Found at i:8084559 original size:123 final size:119
Alignment explanation
Indices: 8084415--8084668 Score: 339
Period size: 123 Copynumber: 2.1 Consensus size: 119
8084405 GACATGCAAT
* * * * * *
8084415 TAAATATATAATCACATAATTAACAATGTCAAACATGTAATTAAAT-ATTTAATCATGCAATTAA
1 TAAATATATAATCACACAATTAACAATATAAAACATGCAAATAAATAAATT-ATCATGCAATTAA
* *
8084479 CAATGTAAAACATGCAAATAAATATATAAACATGCAATTAACAATATAAATTATCCAAA
65 CAATATAAAACATGCAAA-AAA-A-AT-AACATGCAATTAACAATATAAAATATCCAAA
**
8084538 TAAATATATAATCATGCAATTAACAATATAAAACATGCAAATAAATAAATTATCATGCAATTAAC
1 TAAATATATAATCACACAATTAACAATATAAAACATGCAAATAAATAAATTATCATGCAATTAAC
** *
8084603 AATATAAAACATGCAAAAAAAATATTATGCAATTAACAATATAAAATATGCAAA
66 AATATAAAACATGCAAAAAAAATAACATGCAATTAACAATATAAAATATCCAAA
8084657 TAAATATATAAT
1 TAAATATATAAT
8084669 AATAATCATG
Statistics
Matches: 117, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
119 39 0.33
120 2 0.02
121 1 0.01
122 3 0.03
123 69 0.59
124 3 0.03
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (119 bp):
TAAATATATAATCACACAATTAACAATATAAAACATGCAAATAAATAAATTATCATGCAATTAAC
AATATAAAACATGCAAAAAAAATAACATGCAATTAACAATATAAAATATCCAAA
Found at i:8084742 original size:21 final size:21
Alignment explanation
Indices: 8084698--8084766 Score: 104
Period size: 21 Copynumber: 3.3 Consensus size: 21
8084688 AAATAAATAA
* *
8084698 ATTAATAATCATGC-AAACAA
1 ATTAATAGTCATGCAAAACAT
8084718 ATTAATAGTCATGCAAAACAT
1 ATTAATAGTCATGCAAAACAT
*
8084739 ATTAATAGTCATGCAAAATAT
1 ATTAATAGTCATGCAAAACAT
8084760 ATTAATA
1 ATTAATA
8084767 AAATCACACA
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
20 13 0.29
21 32 0.71
ACGTcount: A:0.51, C:0.12, G:0.07, T:0.30
Consensus pattern (21 bp):
ATTAATAGTCATGCAAAACAT
Found at i:8085493 original size:20 final size:20
Alignment explanation
Indices: 8085452--8085494 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
8085442 TTTTTTTACT
*
8085452 AAAAAATTAAAATTAAACTA
1 AAAAAATTAAAATTAAAATA
8085472 AAAAAATTAAAA-TACAAATA
1 AAAAAATTAAAATTA-AAATA
8085492 AAA
1 AAA
8085495 TTTAGGACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.10
20 19 0.90
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (20 bp):
AAAAAATTAAAATTAAAATA
Found at i:8085822 original size:43 final size:43
Alignment explanation
Indices: 8085775--8085973 Score: 183
Period size: 43 Copynumber: 4.6 Consensus size: 43
8085765 CCAACTAAGG
* * *
8085775 CTTTGAAATTTTTGAAAAATAAAATGCTCCTCCATAGTTGAAA
1 CTTTGAAACTTTTGAAAAATAAAATGCTCCTCCACAGTTGAGA
* * * * *
8085818 CTTTGGAACTTTTG-AAAATACAATGTTGTTCC-CCAACAATTGAGG
1 CTTTGAAACTTTTGAAAAATA-AA--ATGCTCCTCC-ACAGTTGAGA
* * *
8085863 CTTT-AGAACTTTTGAAAAATAAAATACTCCTCCACAGCTGAGG
1 CTTTGA-AACTTTTGAAAAATAAAATGCTCCTCCACAGTTGAGA
* * *
8085906 CTTTAAAAC-TTTGAAAAATAAAATG-TTCTCTCACAATTGAGA
1 CTTTGAAACTTTTGAAAAATAAAATGCTCCTC-CACAGTTGAGA
8085948 CTTTGAAACTTTTGAAAAATAAAATG
1 CTTTGAAACTTTTGAAAAATAAAATG
8085974 AGATCATTTT
Statistics
Matches: 126, Mismatches: 20, Indels: 20
0.76 0.12 0.12
Matches are distributed among these distances:
41 4 0.03
42 37 0.29
43 49 0.39
44 5 0.04
45 25 0.20
46 6 0.05
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.33
Consensus pattern (43 bp):
CTTTGAAACTTTTGAAAAATAAAATGCTCCTCCACAGTTGAGA
Found at i:8085876 original size:88 final size:85
Alignment explanation
Indices: 8085775--8085973 Score: 231
Period size: 88 Copynumber: 2.3 Consensus size: 85
8085765 CCAACTAAGG
* * * ** *
8085775 CTTTGAAATTTTTGAAAAATAAAATGCTCCTCCATAGTTGAAACTTTGGAACTTTTG-AAAATAC
1 CTTTGAAACTTTTGAAAAATAAAATGCTCCTCCACAGCTGAAACTTTAAAAC-TTTGAAAAATAA
* *
8085839 AATGTTGTTCCCCAACAATTGAGG
65 AATGTT-CT-CCC-ACAATTGAGA
* **
8085863 CTTT-AGAACTTTTGAAAAATAAAATACTCCTCCACAGCTGAGGCTTTAAAACTTTGAAAAATAA
1 CTTTGA-AACTTTTGAAAAATAAAATGCTCCTCCACAGCTGAAACTTTAAAACTTTGAAAAATAA
*
8085927 AATGTTCTCTCACAATTGAGA
65 AATGTTCTCCCACAATTGAGA
8085948 CTTTGAAACTTTTGAAAAATAAAATG
1 CTTTGAAACTTTTGAAAAATAAAATG
8085974 AGATCATTTT
Statistics
Matches: 95, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
85 32 0.34
86 3 0.03
87 6 0.06
88 54 0.57
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.33
Consensus pattern (85 bp):
CTTTGAAACTTTTGAAAAATAAAATGCTCCTCCACAGCTGAAACTTTAAAACTTTGAAAAATAAA
ATGTTCTCCCACAATTGAGA
Found at i:8086162 original size:13 final size:13
Alignment explanation
Indices: 8086144--8086168 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8086134 TTTCAAACAT
8086144 ATGCAATGAATGC
1 ATGCAATGAATGC
8086157 ATGCAATGAATG
1 ATGCAATGAATG
8086169 AAAAGATTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (13 bp):
ATGCAATGAATGC
Found at i:8087459 original size:16 final size:15
Alignment explanation
Indices: 8087440--8087480 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
8087430 TTCTTCCTCC
*
8087440 TTTTTTTTGTTATTTA
1 TTTTTTTT-TTACTTA
8087456 TTTTTTATTTTACTTA
1 TTTTTT-TTTTACTTA
8087472 TTTTTTTTT
1 TTTTTTTTT
8087481 CTTTGTACGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 3 0.13
16 18 0.78
17 2 0.09
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (15 bp):
TTTTTTTTTTACTTA
Found at i:8087790 original size:15 final size:14
Alignment explanation
Indices: 8087770--8087815 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
8087760 TTTTCATCAA
*
8087770 TTTTCTTTGTTTCTT
1 TTTTCTTTCTTT-TT
8087785 TTTTCTTTC-TTTT
1 TTTTCTTTCTTTTT
8087798 TTTT-TTTCATTTTT
1 TTTTCTTTC-TTTTT
8087812 TTTT
1 TTTT
8087816 GGTATGCACT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
12 4 0.14
13 6 0.21
14 10 0.36
15 8 0.29
ACGTcount: A:0.02, C:0.11, G:0.02, T:0.85
Consensus pattern (14 bp):
TTTTCTTTCTTTTT
Found at i:8087799 original size:13 final size:13
Alignment explanation
Indices: 8087783--8087815 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
8087773 TCTTTGTTTC
*
8087783 TTTTTTCTTTC-T
1 TTTTTTTTTTCAT
8087795 TTTTTTTTTTCAT
1 TTTTTTTTTTCAT
8087808 TTTTTTTT
1 TTTTTTTT
8087816 GGTATGCACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 10 0.53
13 9 0.47
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTTTTTCAT
Found at i:8090281 original size:23 final size:24
Alignment explanation
Indices: 8090254--8090301 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
8090244 CATACCAAAT
8090254 ATCATG-TAATAATA-TCATGCTAG
1 ATCATGCTAA-AATATTCATGCTAG
*
8090277 ATCATGCTAAAATATTCATGTTAG
1 ATCATGCTAAAATATTCATGCTAG
8090301 A
1 A
8090302 ATGTCGTGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 10 0.45
24 12 0.55
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (24 bp):
ATCATGCTAAAATATTCATGCTAG
Found at i:8090584 original size:22 final size:21
Alignment explanation
Indices: 8090543--8090590 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
8090533 TTAATCATAC
*
8090543 AATCACACAAATGAATATATA
1 AATCACACAAATGAAAATATA
8090564 TAATCACACAAAT-AACAATATA
1 -AATCACACAAATGAA-AATATA
8090586 AATCA
1 AATCA
8090591 TGCAATTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.58, C:0.17, G:0.02, T:0.23
Consensus pattern (21 bp):
AATCACACAAATGAAAATATA
Found at i:8090621 original size:41 final size:41
Alignment explanation
Indices: 8090550--8090864 Score: 309
Period size: 41 Copynumber: 7.7 Consensus size: 41
8090540 TACAATCACA
** * *
8090550 CAAATGAATATATATAATCACACAAATAACAATATAAATCATG
1 CAAAT-AA-ATATATAATCATGCAATTAACAATATAAAACATG
* *
8090593 CAATTAAATATATAATCATGCAATTAACAACATAAAACATG
1 CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
* *
8090634 CAAATAAATATTTAATCATGCAATTAACAACATAAAACATG
1 CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
* * *
8090675 CAATTAAATATATAATTATACAATTAACAATATAAAACATG
1 CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
* * * * * *
8090716 TAATTAAATATATTATCATACAGTTAACAATATAAAACATA
1 CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
* ** *
8090757 CAAATAAACATAT--T-ATGCAATTAATGATACAAAACATG
1 CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
* * *
8090795 CAAATAAATATATTATCATGCAATTAA-ATATATAATA-ATA
1 CAAATAAATATATAATCATGCAATTAACA-ATATAAAACATG
* *
8090835 CAAAT-AATAATATAAATCATCCAATAAACA
1 CAAATAAAT-ATAT-AATCATGCAATTAACA
8090865 TGCAATTAAA
Statistics
Matches: 230, Mismatches: 35, Indels: 15
0.82 0.12 0.05
Matches are distributed among these distances:
38 30 0.13
39 4 0.02
40 12 0.05
41 177 0.77
42 3 0.01
43 4 0.02
ACGTcount: A:0.55, C:0.12, G:0.04, T:0.29
Consensus pattern (41 bp):
CAAATAAATATATAATCATGCAATTAACAATATAAAACATG
Found at i:8090931 original size:20 final size:20
Alignment explanation
Indices: 8090906--8091010 Score: 81
Period size: 20 Copynumber: 5.3 Consensus size: 20
8090896 TCACACAAAT
*
8090906 AAATAAATTGATAATCATGC
1 AAATAAATTAATAATCATGC
*
8090926 AAATAAATTAATAATCATGT
1 AAATAAATTAATAATCATGC
* * * *
8090946 AAACATATTAATAGTCATGT
1 AAATAAATTAATAATCATGC
* *
8090966 AAACATATTAATAA--AT-C
1 AAATAAATTAATAATCATGC
* * *
8090983 ACATAAATATATTAATCATGT
1 AAATAAAT-TAATAATCATGC
8091004 AAATAAA
1 AAATAAA
8091011 ATATTAGACA
Statistics
Matches: 68, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
17 5 0.07
18 7 0.10
20 50 0.74
21 6 0.09
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.32
Consensus pattern (20 bp):
AAATAAATTAATAATCATGC
Found at i:8091034 original size:32 final size:33
Alignment explanation
Indices: 8090987--8091049 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
8090977 TAAATCACAT
* *
8090987 AAATATATTAATCATGTAAATAAAATATTAGAC
1 AAATAAATTAATCATGCAAATAAAATATTAGAC
*
8091020 AAATAAATT-ATCATGCAAATATAATATTAG
1 AAATAAATTAATCATGCAAATAAAATATTAG
8091050 TCATGCAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 19 0.70
33 8 0.30
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.33
Consensus pattern (33 bp):
AAATAAATTAATCATGCAAATAAAATATTAGAC
Found at i:8091055 original size:20 final size:18
Alignment explanation
Indices: 8091022--8091059 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
8091012 TATTAGACAA
8091022 ATAAATTATCATGCAAAT
1 ATAAATTATCATGCAAAT
8091040 ATAATATTAGTCATGCAAAT
1 ATAA-ATTA-TCATGCAAAT
8091060 TCATGCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (18 bp):
ATAAATTATCATGCAAAT
Found at i:8091060 original size:32 final size:31
Alignment explanation
Indices: 8090997--8091073 Score: 75
Period size: 32 Copynumber: 2.5 Consensus size: 31
8090987 AAATATATTA
* * *
8090997 ATCATGTAAATAAAATATTAGACAAATAAATT
1 ATCATGCAAATATAATATTAGACAAACAAA-T
* **
8091029 ATCATGCAAATATAATATTAGTCATGCAAAT
1 ATCATGCAAATATAATATTAGACAAACAAAT
*
8091060 -TCATGCAAAAATAA
1 ATCATGCAAATATAA
8091074 ATACCATGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 13 0.34
31 1 0.03
32 24 0.63
ACGTcount: A:0.52, C:0.10, G:0.08, T:0.30
Consensus pattern (31 bp):
ATCATGCAAATATAATATTAGACAAACAAAT
Found at i:8093474 original size:20 final size:21
Alignment explanation
Indices: 8093451--8093500 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
8093441 TTTAAAGATT
8093451 AATTAAAT-AATTAT-AGATGA
1 AATTAAATAAATTATCA-ATGA
8093471 AATTAAATAAATTATCAATGA
1 AATTAAATAAATTATCAATGA
8093492 AATTTAAAT
1 AA-TTAAAT
8093501 TTTACCAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.30
21 12 0.44
22 7 0.26
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.36
Consensus pattern (21 bp):
AATTAAATAAATTATCAATGA
Found at i:8094933 original size:20 final size:19
Alignment explanation
Indices: 8094903--8095046 Score: 103
Period size: 20 Copynumber: 7.3 Consensus size: 19
8094893 TTAAAAAAAT
8094903 TTTTTAGAAATCTTTTAGAAA
1 TTTTTA-AAAT-TTTTAGAAA
*
8094924 TTTTTAAAATTTTTTGAAA
1 TTTTTAAAATTTTTAGAAA
* *
8094943 TTTTTACAATTTTTTTTGAAA
1 TTTTTA-AA-ATTTTTAGAAA
* *
8094964 TTTTAAAAATTATTT--AAT
1 TTTTTAAAATT-TTTAGAAA
* *
8094982 TTTTTATAATTTTTAAAAA
1 TTTTTAAAATTTTTAGAAA
* * *
8095001 TTTTTAGAAAATTTCAAAAA
1 TTTTTA-AAATTTTTAGAAA
*
8095021 ATTTTAAAATTTTTTAGAAA
1 TTTTTAAAA-TTTTTAGAAA
8095041 CTTTTT
1 -TTTTT
8095047 TTTCATATTG
Statistics
Matches: 99, Mismatches: 16, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
17 3 0.03
18 11 0.11
19 27 0.27
20 33 0.33
21 25 0.25
ACGTcount: A:0.39, C:0.03, G:0.04, T:0.54
Consensus pattern (19 bp):
TTTTTAAAATTTTTAGAAA
Found at i:8095047 original size:12 final size:10
Alignment explanation
Indices: 8094882--8095047 Score: 85
Period size: 10 Copynumber: 16.3 Consensus size: 10
8094872 CCAAACTGCA
8094882 TTTAAAATTT
1 TTTAAAATTT
8094892 TTTAAAAAAATTT
1 TTT---AAAATTT
*
8094905 TTTAGAAATCT
1 TTTA-AAATTT
8094916 TTTAGAAA-TT
1 TTTA-AAATTT
8094926 TTTAAAATTT
1 TTTAAAATTT
*
8094936 TTTGAAA-TT
1 TTTAAAATTT
*
8094945 TTTACAATTTTT
1 TTTA-AA-ATTT
*
8094957 TTTGAAA-TT
1 TTTAAAATTT
* *
8094966 TTAAAAATTA
1 TTTAAAATTT
8094976 TTT--AATTT
1 TTTAAAATTT
*
8094984 TTTATAA-TT
1 TTTAAAATTT
*
8094993 TTTAAAAATT
1 TTTAAAATTT
*
8095003 TTTAGAAA-AT
1 TTTA-AAATTT
* **
8095013 TTCAAAAAAT
1 TTTAAAATTT
8095023 TTTAAAATTT
1 TTTAAAATTT
8095033 TTTAGAAACTTT
1 TTTA-AAA-TTT
8095045 TTT
1 TTT
8095048 TTCATATTGA
Statistics
Matches: 122, Mismatches: 18, Indels: 30
0.72 0.11 0.18
Matches are distributed among these distances:
8 7 0.06
9 26 0.21
10 47 0.39
11 21 0.17
12 11 0.09
13 10 0.08
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (10 bp):
TTTAAAATTT
Found at i:8097107 original size:17 final size:15
Alignment explanation
Indices: 8097077--8097136 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
8097067 TTTGAGATTT
8097077 TTTAAAAAAATTTAA
1 TTTAAAAAAATTTAA
8097092 TTTAATAAAAATTTTAA
1 TTTAA-AAAAA-TTTAA
8097109 --T-AAAAAATTTAA
1 TTTAAAAAAATTTAA
* * *
8097121 ATTGATAAAATTTAA
1 TTTAAAAAAATTTAA
8097136 T
1 T
8097137 ATGAAAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
12 5 0.13
13 5 0.13
14 2 0.05
15 16 0.42
16 5 0.13
17 5 0.13
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.42
Consensus pattern (15 bp):
TTTAAAAAAATTTAA
Found at i:8097109 original size:12 final size:12
Alignment explanation
Indices: 8097090--8097120 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
8097080 AAAAAAATTT
8097090 AATTTAATAAAA
1 AATTTAATAAAA
*
8097102 ATTTTAATAAAA
1 AATTTAATAAAA
8097114 AATTTAA
1 AATTTAA
8097121 ATTGATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
AATTTAATAAAA
Found at i:8097143 original size:29 final size:29
Alignment explanation
Indices: 8097081--8097137 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
8097071 AGATTTTTTA
*
8097081 AAAAAATTTAATTTAATAAAAATTTTAAT
1 AAAAAATTTAAATTAATAAAAATTTTAAT
*
8097110 AAAAAATTTAAATTGAT-AAAA-TTTAAT
1 AAAAAATTTAAATTAATAAAAATTTTAAT
8097137 A
1 A
8097138 TGAAAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 7 0.27
28 4 0.15
29 15 0.58
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (29 bp):
AAAAAATTTAAATTAATAAAAATTTTAAT
Done.