Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 43 of 77
Found at i:8412672 original size:16 final size:17
Alignment explanation
Indices: 8412651--8412685 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
8412641 AACCAATATT
8412651 ATTATTATT-TTAAAAA
1 ATTATTATTATTAAAAA
8412667 ATTATTATTATTAAAAA
1 ATTATTATTATTAAAAA
8412684 AT
1 AT
8412686 GTAAATCCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTATTATTATTAAAAA
Found at i:8412684 original size:19 final size:19
Alignment explanation
Indices: 8412648--8412684 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8412638 TTAAACCAAT
**
8412648 ATTATTATTATTTTAAAAA
1 ATTATTATTATTAAAAAAA
8412667 ATTATTATTATTAAAAAA
1 ATTATTATTATTAAAAAA
8412685 TGTAAATCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTATTATTATTAAAAAAA
Found at i:8415419 original size:154 final size:157
Alignment explanation
Indices: 8415128--8415427 Score: 430
Period size: 154 Copynumber: 1.9 Consensus size: 157
8415118 TATAATTGAG
8415128 CAGAGATCATTGCTGAATGTCCAATATCTCTTATGCAAACTTTATGTCCTTTGCTTTAAAGAAAA
1 CAGAGATCATTGCTGAATGTCCAATATCTCTTATGCAAA---TA-GTCCTTTGCTTTAAAGAAAA
** * * * *
8415193 TGAATCTTCAGTCCATTTTCACATTAAAATATGACATTGACTTGGTTAATGCTGCCAATGCCTAT
62 AAAATCTTCAGGCCATTTCCACATTAAAATATGACATTGACTTGGTTAAAGCAGCCAATGCCTAT
*
8415258 CAAAGTATTTC-CATTAAGACATGATGGAGC
127 AAAAGTATTTCACATTAAGACATGATGGAGC
* *
8415288 CAGATATCATTGCTGAATGTCCAATATCTCTTATGC-AA-A-TCCTTTTCTTTAAAGAAAAAAAA
1 CAGAGATCATTGCTGAATGTCCAATATCTCTTATGCAAATAGTCCTTTGCTTTAAAG-AAAAAAA
8415350 ATCTTCAGGCCATTTCCACATTAAAATATGACATTGACTTGAG-TAAAGCAGCCAATGCCTATAA
65 ATCTTCAGGCCATTTCCACATTAAAATATGACATTGACTTG-GTTAAAGCAGCCAATGCCTATAA
8415414 AAGTATTTCACATT
129 AAGTATTTCACATT
8415428 TAATGATGGA
Statistics
Matches: 128, Mismatches: 9, Indels: 11
0.86 0.06 0.07
Matches are distributed among these distances:
153 14 0.11
154 71 0.55
155 6 0.05
159 2 0.02
160 35 0.27
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.33
Consensus pattern (157 bp):
CAGAGATCATTGCTGAATGTCCAATATCTCTTATGCAAATAGTCCTTTGCTTTAAAGAAAAAAAA
TCTTCAGGCCATTTCCACATTAAAATATGACATTGACTTGGTTAAAGCAGCCAATGCCTATAAAA
GTATTTCACATTAAGACATGATGGAGC
Found at i:8416278 original size:29 final size:29
Alignment explanation
Indices: 8416212--8416283 Score: 67
Period size: 30 Copynumber: 2.5 Consensus size: 29
8416202 TATTCCATCT
*
8416212 AAATAAAAATTTAATTAGATGTAAATAAA
1 AAATAAAAAATTAATTAGATGTAAATAAA
* * *
8416241 TATTGAAAAGATTAATT-GATTGT-AATAAA
1 AAAT-AAAAAATTAATTAGA-TGTAAATAAA
*
8416270 AAATAAAAACTTAA
1 AAATAAAAAATTAA
8416284 ATATTTTTTA
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
28 8 0.24
29 12 0.36
30 13 0.39
ACGTcount: A:0.58, C:0.01, G:0.08, T:0.32
Consensus pattern (29 bp):
AAATAAAAAATTAATTAGATGTAAATAAA
Found at i:8418398 original size:2 final size:2
Alignment explanation
Indices: 8418391--8418419 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
8418381 CCATATGTAC
8418391 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8418420 CATACATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8419869 original size:32 final size:31
Alignment explanation
Indices: 8419833--8419901 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 31
8419823 ACTACTGAAT
*
8419833 AATCAATTAATAAATTATAATTTAACTAAAC
1 AATCAACTAATAAATTATAATTTAACTAAAC
* *
8419864 AAATCAACTAATAAATTATAATTTCATTAAAC
1 -AATCAACTAATAAATTATAATTTAACTAAAC
8419896 AATCAA
1 AATCAA
8419902 ATTTATACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
31 6 0.18
32 28 0.82
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (31 bp):
AATCAACTAATAAATTATAATTTAACTAAAC
Found at i:8429631 original size:41 final size:41
Alignment explanation
Indices: 8429557--8429870 Score: 348
Period size: 42 Copynumber: 7.4 Consensus size: 41
8429547 ATGATTGTTA
* * *
8429557 AGGAGCAATTTATTTTTC-AAAGTCGTTGTTGCCTCTATTTAG
1 AGGAGCAATTTA-CTTTCAAAAGTTG-TGGTGCCTCTATTTAG
*
8429599 AGGAGTAATTTACTTTCAAAAGTTGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTCAAAAGTTGTGGTGCCTCTATTTAG
*
8429640 AGGAGCAATTTACTTTTCAAAAGTTGAGGTGCCTCTATTTAG
1 AGGAGCAATTTAC-TTTCAAAAGTTGTGGTGCCTCTATTTAG
*
8429682 AGGAGTAATTTACTTTC-AAAGTTAG-GGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTCAAAAGTT-GTGGTGCCTCTATTTAG
* * * *
8429722 TGGAGCAATTTACTTTCCAAAAGTTGCGGTGCTTCTGTTTAG
1 AGGAGCAATTTACTTT-CAAAAGTTGTGGTGCCTCTATTTAG
* *
8429764 AGGAGCAATTTACTTTCAAAAGTTTCAAAAGTTATGGTGCCTCTGTTTGG
1 AGGAGCAATTTACTTTCAAAAG-TT-----G---TGGTGCCTCTATTTAG
*
8429814 AGGAGCAATTTATTTTTC-AAAGTTGTGGTGCCTCTATTTAG
1 AGGAGCAATTTA-CTTTCAAAAGTTGTGGTGCCTCTATTTAG
8429855 AGGAGCAATTTACTTT
1 AGGAGCAATTTACTTT
8429871 GCCTCTATTT
Statistics
Matches: 237, Mismatches: 19, Indels: 34
0.82 0.07 0.12
Matches are distributed among these distances:
40 38 0.16
41 70 0.30
42 92 0.39
44 1 0.00
47 1 0.00
49 2 0.01
50 29 0.12
51 4 0.02
ACGTcount: A:0.26, C:0.14, G:0.22, T:0.39
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCAAAAGTTGTGGTGCCTCTATTTAG
Found at i:8429743 original size:82 final size:82
Alignment explanation
Indices: 8429557--8430094 Score: 444
Period size: 82 Copynumber: 6.7 Consensus size: 82
8429547 ATGATTGTTA
* * * * *
8429557 AGGAGCAATTTATTTTTC-AAAGTCGTTGTTGCCTCTATTTAGAGGAGTAATTTACTTTCAAAAG
1 AGGAGCAATTTACTTTTCAAAAGTTG-CGGTGCCTCTATTTAGAGGAGCAATTTACTTTC-AAAG
8429621 TTGTGGTGCCTCTATTTAG
64 TTGTGGTGCCTCTATTTAG
* *
8429640 AGGAGCAATTTACTTTTCAAAAGTTGAGGTGCCTCTATTTAGAGGAGTAATTTACTTTCAAAGTT
1 AGGAGCAATTTACTTTTCAAAAGTTGCGGTGCCTCTATTTAGAGGAGCAATTTACTTTCAAAGTT
8429705 AG-GGTGCCTCTATTTAG
66 -GTGGTGCCTCTATTTAG
* * * *
8429722 TGGAGCAATTTACTTTCCAAAAGTTGCGGTGCTTCTGTTTAGAGGAGCAATTTACTTTCAAAAGT
1 AGGAGCAATTTACTTTTCAAAAGTTGCGGTGCCTCTATTTAGAGGAGCAATTTACTTTC-AAAG-
* *
8429787 TTCAAAAGTTATGGTGCCTCTGTTTGG
64 TT-----G---TGGTGCCTCTATTTAG
* *
8429814 AGGAGCAATTTATTTTTC-AAAGTTGTGGTGCCTCTATTTAGAGGAGCAATTTA----C-----T
1 AGGAGCAATTTACTTTTCAAAAGTTGCGGTGCCTCTATTTAGAGGAGCAATTTACTTTCAAAGTT
*
8429869 -T--TGCCTCTATTTAA
66 GTGGTGCCTCTATTTAG
* * *
8429883 AGGAGCAATTTACTTTCCAAAAGTTGCGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGT
1 AGGAGCAATTTACTTTTCAAAAGTTGCGGTGCCTCTATTTAGAGGAGCAATTTA-CTTTCAAAGT
* * *
8429948 CGCAGTTGCCTCTATTTAG
65 TG-TGGTGCCTCTATTTAG
* * *
8429967 AGAAGCAATTTACTTTTC-AAAGTTGTGGTGCCTCT-GTT-----A-CAATTTA-TTGTCCAAAG
1 AGGAGCAATTTACTTTTCAAAAGTTGCGGTGCCTCTATTTAGAGGAGCAATTTACTT-T-CAAAG
* * *
8430023 TCGCAGTTGCCTCTATTTAG
64 TTG-TGGTGCCTCTATTTAG
* * * *
8430043 AGAAGCAATTTACTTTTC-AAAGTTGTGGTGCCTCTGTTTAAAGGAGC-ATTTA
1 AGGAGCAATTTACTTTTCAAAAGTTGCGGTGCCTCTATTTAGAGGAGCAATTTA
8430095 TTTTTGAAGT
Statistics
Matches: 386, Mismatches: 33, Indels: 73
0.78 0.07 0.15
Matches are distributed among these distances:
69 26 0.07
70 33 0.09
71 1 0.00
74 2 0.01
75 2 0.01
76 67 0.17
77 3 0.01
80 1 0.00
82 82 0.21
83 70 0.18
84 36 0.09
87 1 0.00
88 2 0.01
91 32 0.08
92 28 0.07
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (82 bp):
AGGAGCAATTTACTTTTCAAAAGTTGCGGTGCCTCTATTTAGAGGAGCAATTTACTTTCAAAGTT
GTGGTGCCTCTATTTAG
Found at i:8429857 original size:91 final size:91
Alignment explanation
Indices: 8429695--8429870 Score: 255
Period size: 91 Copynumber: 1.9 Consensus size: 91
8429685 AGTAATTTAC
* * *
8429695 TTTCAAAGTTAGGGTGCCTCTATTTAGTGGAGCAATTTACTTTCCAAAAGTTGCGGTGCTTCTGT
1 TTTCAAAGTTAGGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAAGTTGCGGTGCCTCTAT
8429760 TTAGAGGAGCAATTTACTTTCAAAAG
66 TTAGAGGAGCAATTTACTTTCAAAAG
* * * * * *
8429786 TTTCAAAAGTTATGGTGCCTCTGTTTGGAGGAGCAATTTATTTTTC-AAAGTTGTGGTGCCTCTA
1 TTTC-AAAGTTAGGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAAGTTGCGGTGCCTCTA
8429850 TTTAGAGGAGCAATTTACTTT
65 TTTAGAGGAGCAATTTACTTT
8429871 GCCTCTATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
91 40 0.53
92 35 0.47
ACGTcount: A:0.25, C:0.14, G:0.22, T:0.39
Consensus pattern (91 bp):
TTTCAAAGTTAGGGTGCCTCTATTTAGAGGAGCAATTTACTTTCCAAAAGTTGCGGTGCCTCTAT
TTAGAGGAGCAATTTACTTTCAAAAG
Found at i:8429873 original size:28 final size:28
Alignment explanation
Indices: 8429842--8429898 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
8429832 AAAGTTGTGG
*
8429842 TGCCTCTATTTAGAGGAGCAATTTACTT
1 TGCCTCTATTTAAAGGAGCAATTTACTT
8429870 TGCCTCTATTTAAAGGAGCAATTTACTT
1 TGCCTCTATTTAAAGGAGCAATTTACTT
8429898 T
1 T
8429899 CCAAAAGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (28 bp):
TGCCTCTATTTAAAGGAGCAATTTACTT
Found at i:8429917 original size:42 final size:41
Alignment explanation
Indices: 8429870--8430099 Score: 208
Period size: 42 Copynumber: 5.7 Consensus size: 41
8429860 CAATTTACTT
* *
8429870 TGCCTCTATTTAAAGGAGCAATTTACTTTCCAAAAGTTGCGG
1 TGCCTCTATTTAGAGGAGCAATTTACTTTTC-AAAGTTGCGG
* * * *
8429912 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGCAGT
1 TGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTTGC-GG
* *
8429954 TGCCTCTATTTAGAGAAGCAATTTACTTTTCAAAGTTGTGG
1 TGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTTGCGG
* * * *
8429995 TGCCTCT-GTT-----A-CAATTTA-TTGTCCAAAGTCGCAGT
1 TGCCTCTATTTAGAGGAGCAATTTACTT-TTCAAAGTTGC-GG
* *
8430030 TGCCTCTATTTAGAGAAGCAATTTACTTTTCAAAGTTGTGG
1 TGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTTGCGG
* * *
8430071 TGCCTCTGTTTAAAGGAGC-ATTTATTTTT
1 TGCCTCTATTTAGAGGAGCAATTTACTTTT
8430100 GAAGTCATGG
Statistics
Matches: 151, Mismatches: 26, Indels: 24
0.75 0.13 0.12
Matches are distributed among these distances:
33 2 0.01
34 15 0.10
35 9 0.06
36 2 0.01
40 11 0.07
41 33 0.22
42 77 0.51
43 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (41 bp):
TGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTTGCGG
Found at i:8430010 original size:34 final size:36
Alignment explanation
Indices: 8429969--8430080 Score: 95
Period size: 34 Copynumber: 3.0 Consensus size: 36
8429959 CTATTTAGAG
8429969 AAGCAATTTACTTTTCAAAGTTGTGGTGCCTCTGTT
1 AAGCAATTTACTTTTCAAAGTTGTGGTGCCTCTGTT
* * * * *
8430005 -A-CAATTTA-TTGTCCAAAGTCGCAGTTGCCTCTATTT
1 AAGCAATTTACTT-TTCAAAGTTG-TGGTGCCTCT-GTT
8430041 AGAGAAGCAATTTACTTTTCAAAGTTGTGGTGCCTCTGTT
1 ----AAGCAATTTACTTTTCAAAGTTGTGGTGCCTCTGTT
8430081 TAAAGGAGCA
Statistics
Matches: 56, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
33 2 0.04
34 15 0.27
35 9 0.16
36 2 0.04
40 2 0.04
41 9 0.16
42 15 0.27
43 2 0.04
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (36 bp):
AAGCAATTTACTTTTCAAAGTTGTGGTGCCTCTGTT
Found at i:8430056 original size:76 final size:76
Alignment explanation
Indices: 8429930--8430080 Score: 284
Period size: 76 Copynumber: 2.0 Consensus size: 76
8429920 TTTAGAGGAG
* *
8429930 CAATTTATTTTTCAAAGTCGCAGTTGCCTCTATTTAGAGAAGCAATTTACTTTTCAAAGTTGTGG
1 CAATTTATTGTCCAAAGTCGCAGTTGCCTCTATTTAGAGAAGCAATTTACTTTTCAAAGTTGTGG
8429995 TGCCTCTGTTA
66 TGCCTCTGTTA
8430006 CAATTTATTGTCCAAAGTCGCAGTTGCCTCTATTTAGAGAAGCAATTTACTTTTCAAAGTTGTGG
1 CAATTTATTGTCCAAAGTCGCAGTTGCCTCTATTTAGAGAAGCAATTTACTTTTCAAAGTTGTGG
8430071 TGCCTCTGTT
66 TGCCTCTGTT
8430081 TAAAGGAGCA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 73 1.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.40
Consensus pattern (76 bp):
CAATTTATTGTCCAAAGTCGCAGTTGCCTCTATTTAGAGAAGCAATTTACTTTTCAAAGTTGTGG
TGCCTCTGTTA
Found at i:8430178 original size:42 final size:42
Alignment explanation
Indices: 8430119--8430263 Score: 181
Period size: 41 Copynumber: 3.5 Consensus size: 42
8430109 GTGCTTCTGC
*
8430119 TTAGAGAA--TTTATTTATTTTCCAAAGTCATTGAACCTCTA
1 TTAGAGAAGCTTTATTTATTTTCCAAAGTCATTGAGCCTCTA
* * * *
8430159 TTAGAGGAGCTTTATTTA-TTTGCAAAGTCGTTGAGCCTCTT
1 TTAGAGAAGCTTTATTTATTTTCCAAAGTCATTGAGCCTCTA
* *
8430200 TTAGAGAAGCTTTGTTTATTTTCAAAAGTCATTGAGCCTCTA
1 TTAGAGAAGCTTTATTTATTTTCCAAAGTCATTGAGCCTCTA
*
8430242 TTTAGAGAAGCTTT-GTTATTTT
1 -TTAGAGAAGCTTTATTTATTTT
8430264 TTCTTTTCAA
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
40 7 0.08
41 35 0.39
42 34 0.38
43 13 0.15
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.43
Consensus pattern (42 bp):
TTAGAGAAGCTTTATTTATTTTCCAAAGTCATTGAGCCTCTA
Found at i:8430668 original size:2 final size:2
Alignment explanation
Indices: 8430661--8430690 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8430651 AGGCGTTGAT
*
8430661 TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8430691 GAAAAGCAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:8434397 original size:22 final size:21
Alignment explanation
Indices: 8434371--8434412 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8434361 AAATGTAATG
8434371 AAATTAACAAAAAAGGAAAAAA
1 AAATTAA-AAAAAAGGAAAAAA
**
8434393 AAATTAAAGGAAAGGAAAAA
1 AAATTAAAAAAAAGGAAAAA
8434413 TTTAAAGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.74, C:0.02, G:0.14, T:0.10
Consensus pattern (21 bp):
AAATTAAAAAAAAGGAAAAAA
Found at i:8434417 original size:18 final size:18
Alignment explanation
Indices: 8434382--8434431 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
8434372 AATTAACAAA
*
8434382 AAAGGAAA--AAAAAATT
1 AAAGGAAAGGAAAAATTT
8434398 AAAGGAAAGGAAAAATTT
1 AAAGGAAAGGAAAAATTT
*
8434416 AAAGGAAAGGGAAAAT
1 AAAGGAAAGGAAAAAT
8434432 AATTATTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.27
18 22 0.73
ACGTcount: A:0.66, C:0.00, G:0.22, T:0.12
Consensus pattern (18 bp):
AAAGGAAAGGAAAAATTT
Found at i:8437615 original size:22 final size:22
Alignment explanation
Indices: 8437584--8437629 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
8437574 AAAAGAAGAG
* *
8437584 TTTAGGAATTTGT-TTGGATTTT
1 TTTAGAAATTT-TCTTGGAATTT
8437606 TTTAGAAATTTTCTTGGAATTT
1 TTTAGAAATTTTCTTGGAATTT
8437628 TT
1 TT
8437630 GGGCTTTGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.22, C:0.02, G:0.17, T:0.59
Consensus pattern (22 bp):
TTTAGAAATTTTCTTGGAATTT
Found at i:8440716 original size:23 final size:22
Alignment explanation
Indices: 8440690--8440732 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
8440680 ATGCTTTTAT
8440690 TATTTT-ATTTCTAATTTTTGTGA
1 TATTTTAATTT-T-ATTTTTGTGA
8440713 TATTTTAATTTTATTTTTGT
1 TATTTTAATTTTATTTTTGT
8440733 ACAAATTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 8 0.42
23 7 0.37
24 4 0.21
ACGTcount: A:0.21, C:0.02, G:0.07, T:0.70
Consensus pattern (22 bp):
TATTTTAATTTTATTTTTGTGA
Found at i:8441129 original size:123 final size:123
Alignment explanation
Indices: 8440953--8441192 Score: 297
Period size: 123 Copynumber: 2.0 Consensus size: 123
8440943 GAATAATAAT
* * * * * * * **
8440953 AATAAATAAATAATAAATAACAATAAAGTCACACGTTGTAATTTTATTTAAAATATTCAT-GTAA
1 AATAAATAAATAAAAAATAAAAATAAAATCACAAGTAGTAATTTTATTAAAAATAATCATACCAA
*
8441017 AAAATTTTTTAAAATA-TTTTAAAAGTGTTAAAAATATTTT-AAAAATTTTCAAGCACAA
66 AAAA-TTTCTAAAATATTTTTAAAA-TGTTAAAAATATTTTAAAAAATTTTCAAGCACAA
* * *
8441075 AATATATAAATAACAAAATAAAAATAAAATTACAAGTAGTGATTTTATTAAAAATAATCATACCA
1 AATAAATAAATAA-AAAATAAAAATAAAATCACAAGTAGTAATTTTATTAAAAATAATCATACCA
* *
8441140 AAGAATTTCTAAAATATTTTTAAAATGTTGAAAATATTTTAAAAAATTTTCAA
65 AAAAATTTCTAAAATATTTTTAAAATGTTAAAAATATTTTAAAAAATTTTCAA
8441193 ACATAAAAAT
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
122 12 0.12
123 62 0.63
124 25 0.25
ACGTcount: A:0.53, C:0.06, G:0.05, T:0.36
Consensus pattern (123 bp):
AATAAATAAATAAAAAATAAAAATAAAATCACAAGTAGTAATTTTATTAAAAATAATCATACCAA
AAAATTTCTAAAATATTTTTAAAATGTTAAAAATATTTTAAAAAATTTTCAAGCACAA
Found at i:8444853 original size:64 final size:63
Alignment explanation
Indices: 8444639--8444874 Score: 201
Period size: 64 Copynumber: 3.7 Consensus size: 63
8444629 AAACGCCTTA
* * * * * *
8444639 AATAATCCACT-TATAAAAATTTAAAGAGATTATTAAAGGTATTTTTGGCTTG-AAATACATTG
1 AATAATCC-CTATAAAAAAAATGAAAGAGATTATTAAAGGTATTTTTAGATAGAAAATACATTG
* * * * * *
8444701 AATAATCCCTTTATAAAAAATGATAGAGATTATTGAAGGTATTTTTAGCAAAAAAAATACATTG
1 AATAATCCCTATAAAAAAAATGAAAGAGATTATTAAAGGTATTTTTAG-ATAGAAAATACATTG
** * * * ** *
8444765 AATAATCCCCCTCATAAAAATGAAAGGGATTATTAAAGGTATTTTT-GATAGAAAATATTTTC
1 AATAATCCCTATAAAAAAAATGAAAGAGATTATTAAAGGTATTTTTAGATAGAAAATACATTG
* *
8444827 AATAATTCCCTATAAAAAAAATTGAAA-AGGATTATTCAAGGTGTTTTT
1 AATAA-TCCCTATAAAAAAAA-TGAAAGA-GATTATTAAAGGTATTTTT
8444875 GGCCAAAATT
Statistics
Matches: 139, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
61 2 0.01
62 55 0.40
63 12 0.09
64 70 0.50
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.35
Consensus pattern (63 bp):
AATAATCCCTATAAAAAAAATGAAAGAGATTATTAAAGGTATTTTTAGATAGAAAATACATTG
Found at i:8445143 original size:62 final size:62
Alignment explanation
Indices: 8445015--8445280 Score: 196
Period size: 62 Copynumber: 4.3 Consensus size: 62
8445005 AAACATATTC
* * * * * ** ** *
8445015 AATAATTCTCTCTA-AAAAATTGAAAAGGATTATTGAAGGCGTTTCTGATTAAAAATACCTTC
1 AATAA-TCTCTTTATAAAAATTTAAGAGAATTATTGAAGGCGTTTTTGACCAAAAACGCCTTT
* * ** * * * **
8445077 AATAATCTCTTTATCAAAATTTAAGGGTGTTATTGAAGGTGTTTTTTATCTGAAACGCCTTT
1 AATAATCTCTTTATAAAAATTTAAGAGAATTATTGAAGGCGTTTTTGACCAAAAACGCCTTT
* * * * *
8445139 AATAATCCCTTCATAAAAAATGAA-AGAATTATTGAAGGCGTTTTTGGCCAAAAACGCCTTT
1 AATAATCTCTTTATAAAAATTTAAGAGAATTATTGAAGGCGTTTTTGACCAAAAACGCCTTT
* * * * * ** * *
8445200 AATAATCTCCTTATAAAAAATTTAAGAAAATTACTGAAAGCATTTTTGACCTGAAACACCTTC
1 AATAATCTCTTTAT-AAAAATTTAAGAGAATTATTGAAGGCGTTTTTGACCAAAAACGCCTTT
8445263 AATAATCTC-TTATAAAAA
1 AATAATCTCTTTATAAAAA
8445281 ATTGAAATAG
Statistics
Matches: 157, Mismatches: 44, Indels: 7
0.75 0.21 0.03
Matches are distributed among these distances:
61 51 0.32
62 69 0.44
63 37 0.24
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.35
Consensus pattern (62 bp):
AATAATCTCTTTATAAAAATTTAAGAGAATTATTGAAGGCGTTTTTGACCAAAAACGCCTTT
Found at i:8445182 original size:61 final size:61
Alignment explanation
Indices: 8445106--8445301 Score: 205
Period size: 61 Copynumber: 3.2 Consensus size: 61
8445096 TTTAAGGGTG
* * * *
8445106 TTATTGAAGGTGTTTTTTATCTGAAACGCCTTTAATAATCCCTTCATAAAAAA-TGAAAGAA
1 TTATTGAAGGCGTTTTTGACCTGAAACGCCTTTAATAATCCCTT-ATAAAAAATTGAAAAAA
* ** *
8445167 TTATTGAAGGCGTTTTTGGCCAAAAACGCCTTTAATAATCTCCTTATAAAAAATTTAAGAAAA
1 TTATTGAAGGCGTTTTTGACCTGAAACGCCTTTAATAATC-CCTTATAAAAAATTGAA-AAAA
* * * * * * *
8445230 TTACTGAAAGCATTTTTGACCTGAAACACCTTCAATAATCTCTTATAAAAAATTGAAATAGA
1 TTATTGAAGGCGTTTTTGACCTGAAACGCCTTTAATAATCCCTTATAAAAAATTGAAA-AAA
*
8445292 TTATTCAAGG
1 TTATTGAAGG
8445302 TATTTTTTGC
Statistics
Matches: 109, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
61 43 0.39
62 31 0.28
63 35 0.32
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (61 bp):
TTATTGAAGGCGTTTTTGACCTGAAACGCCTTTAATAATCCCTTATAAAAAATTGAAAAAA
Found at i:8445267 original size:63 final size:62
Alignment explanation
Indices: 8445126--8445287 Score: 195
Period size: 63 Copynumber: 2.6 Consensus size: 62
8445116 TGTTTTTTAT
* * * * *
8445126 CTGAAACGCCTTTAATAATC-CCTTCATAAAAAA-TGAAAGAATTATTGAAGGCGTTTTTGGC
1 CTGAAACGCCTTTAATAATCTCCTT-ATAAAAAATTGAAAAAATTACTGAAAGCATTTTTGAC
** *
8445187 CAAAAACGCCTTTAATAATCTCCTTATAAAAAATTTAAGAAAATTACTGAAAGCATTTTTGAC
1 CTGAAACGCCTTTAATAATCTCCTTATAAAAAATTGAA-AAAATTACTGAAAGCATTTTTGAC
* *
8445250 CTGAAACACCTTCAATAATCT-CTTATAAAAAATTGAAA
1 CTGAAACGCCTTTAATAATCTCCTTATAAAAAATTGAAA
8445288 TAGATTATTC
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
61 27 0.32
62 22 0.26
63 36 0.42
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (62 bp):
CTGAAACGCCTTTAATAATCTCCTTATAAAAAATTGAAAAAATTACTGAAAGCATTTTTGAC
Found at i:8445309 original size:63 final size:61
Alignment explanation
Indices: 8445106--8445310 Score: 184
Period size: 63 Copynumber: 3.3 Consensus size: 61
8445096 TTTAAGGGTG
* * *
8445106 TTATTGAAGGTGTTTTTT-ATCTGAAACGCCTTTAATAATCCCTTCATAAAAAA-TGAAAGAA
1 TTATTGAAGGTATTTTTTGACCTGAAACGCCTTTAATAATCTCTT-ATAAAAAATTGAAA-AA
** * ** *
8445167 TTATTGAAGG-CGTTTTTGGCCAAAAACGCCTTTAATAATCTCCTTATAAAAAATTTAAGAAAA
1 TTATTGAAGGTATTTTTTGACCTGAAACGCCTTTAATAATCT-CTTATAAAAAA-TTGA-AAAA
* * * * *
8445230 TTACTGAAAGCA-TTTTTGACCTGAAACACCTTCAATAATCTCTTATAAAAAATTGAAATAGA
1 TTATTGAAGGTATTTTTTGACCTGAAACGCCTTTAATAATCTCTTATAAAAAATTGAAA-A-A
*
8445292 TTATTCAAGGTATTTTTTG
1 TTATTGAAGGTATTTTTTG
8445311 CTAAAAAAGC
Statistics
Matches: 114, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
60 7 0.06
61 40 0.35
62 23 0.20
63 42 0.37
64 2 0.02
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (61 bp):
TTATTGAAGGTATTTTTTGACCTGAAACGCCTTTAATAATCTCTTATAAAAAATTGAAAAA
Found at i:8445638 original size:62 final size:62
Alignment explanation
Indices: 8445461--8445680 Score: 167
Period size: 62 Copynumber: 3.5 Consensus size: 62
8445451 AATCTTTTCA
* * * * *
8445461 AAAAAATTGAAGAGGATTATTGAATGTGTTTTTGACCA-AAAATATCTTTAATAATCTCCTTAT
1 AAAAAAGTAAAGAGGATTATTGAAAGTGTTTTTG-CCATAAAATACCTTTAATAAT-TCCCTAT
* *** * * * * * *
8445524 CAAATTTTAAAG-GGATTATTGAAAGCGTTTTTGGCTTGAAACACTTTTAATAATTCCCTAT
1 AAAAAAGTAAAGAGGATTATTGAAAGTGTTTTTGCCATAAAATACCTTTAATAATTCCCTAT
** * * * *
8445585 AAAAAAGTATTGAGGATTATTGAAGGTGTTTTTGCCATAAAATACCTTCAATAATCCCCTTT
1 AAAAAAGTAAAGAGGATTATTGAAAGTGTTTTTGCCATAAAATACCTTTAATAATTCCCTAT
* * * *
8445647 AAAAAATTGAAAG-GAATTATTGAAGGTATTTTTG
1 AAAAAAGT-AAAGAGGATTATTGAAAGTGTTTTTG
8445681 TGAAAGAAGG
Statistics
Matches: 120, Mismatches: 34, Indels: 7
0.75 0.21 0.04
Matches are distributed among these distances:
61 13 0.11
62 97 0.81
63 10 0.08
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.37
Consensus pattern (62 bp):
AAAAAAGTAAAGAGGATTATTGAAAGTGTTTTTGCCATAAAATACCTTTAATAATTCCCTAT
Found at i:8447284 original size:20 final size:20
Alignment explanation
Indices: 8447262--8447298 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
8447252 CTAAATTCAT
*
8447262 TTTTATTT-CTTTTAATATC
1 TTTTATTTAATTTTAATATC
8447281 TTTTATTTAATTTTAATA
1 TTTTATTTAATTTTAATA
8447299 ATAAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATTTAATTTTAATATC
Found at i:8451188 original size:3 final size:3
Alignment explanation
Indices: 8451180--8451242 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
8451170 CAAACATAAA
8451180 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8451228 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
8451243 GTCAATACGT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8458384 original size:117 final size:116
Alignment explanation
Indices: 8458173--8458397 Score: 342
Period size: 117 Copynumber: 1.9 Consensus size: 116
8458163 CACTAATGCT
* ** * **
8458173 ACTAGCTTCCGGCCTCCTTTATTGACTTCACTCCTACTTCTATTGCAATTCCACAATTTAAGATG
1 ACTAGCCTCCGGCCTCCTTTATTGACCACACTCCTACTTCTACTGCAATGACACAATTTAAGATG
*
8458238 CTTATATAGTGCTTTAGCTAAACTATTTAGCTATGAAGATCATGCTCTGCG
66 CTTATATAGTACTTTAGCTAAACTATTTAGCTATGAAGATCATGCTCTGCG
*
8458289 ACTAGCCTCCTGCCTCCTTTATTAGACCACACTCCTACTTCTACTGCAATGACACAATTTAAGAT
1 ACTAGCCTCCGGCCTCCTTTATT-GACCACACTCCTACTTCTACTGCAATGACACAATTTAAGAT
* * *
8458354 GCTTATATAGTACTTTAGTTGAACTGTTTAGCTATGAAGATCAT
65 GCTTATATAGTACTTTAGCTAAACTATTTAGCTATGAAGATCAT
8458398 ACACCCAGCA
Statistics
Matches: 97, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
116 21 0.22
117 76 0.78
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (116 bp):
ACTAGCCTCCGGCCTCCTTTATTGACCACACTCCTACTTCTACTGCAATGACACAATTTAAGATG
CTTATATAGTACTTTAGCTAAACTATTTAGCTATGAAGATCATGCTCTGCG
Found at i:8462114 original size:9 final size:9
Alignment explanation
Indices: 8462069--8462115 Score: 58
Period size: 9 Copynumber: 5.0 Consensus size: 9
8462059 TTTGTTCTTG
8462069 AAAAATTTT
1 AAAAATTTT
8462078 AAAATATTTT
1 AAAA-ATTTT
* *
8462088 AACACTTTT
1 AAAAATTTT
8462097 AAAATATTTT
1 AAAA-ATTTT
8462107 AAAAATTTT
1 AAAAATTTT
8462116 TTTACATGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
9 16 0.50
10 16 0.50
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (9 bp):
AAAAATTTT
Found at i:8462115 original size:19 final size:19
Alignment explanation
Indices: 8462069--8462115 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
8462059 TTTGTTCTTG
8462069 AAAAATTTTAAAATATTTT
1 AAAAATTTTAAAATATTTT
* *
8462088 AACACTTTTAAAATATTTT
1 AAAAATTTTAAAATATTTT
8462107 AAAAATTTT
1 AAAAATTTT
8462116 TTTACATGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (19 bp):
AAAAATTTTAAAATATTTT
Found at i:8462138 original size:121 final size:123
Alignment explanation
Indices: 8461945--8462166 Score: 304
Period size: 121 Copynumber: 1.8 Consensus size: 123
8461935 TTTTATGTTA
* * * ** *
8461945 GAAAAATTTTTAAAATATTTTCAACATTTTTAGAATATTTTAGAAATTCTTTGGTATGATTATTT
1 GAAAAATTTTTAAAATATTTTCAACACTTTTAAAATATTTTAAAAATTCTTTGACATGAATATTT
* * * * *
8462010 TCAATAAAATCACTACTTGTAATTTTATTTTTATTTTGTTATTATATATTTTGTTCTT
66 TAAATAAAATCACAACGTGTAACTTTATTGTTATTTTGTTATTATATATTTTGTTCTT
* *
8462068 GAAAAA-TTTTAAAATATTTT-AACACTTTTAAAATATTTTAAAAATTTTTTTACATGAATATTT
1 GAAAAATTTTTAAAATATTTTCAACACTTTTAAAATATTTTAAAAATTCTTTGACATGAATATTT
*
8462131 TAAATAAAATCACAACGTGTGACTTTATTGTTATTT
66 TAAATAAAATCACAACGTGTAACTTTATTGTTATTT
8462167 ATTATTTATT
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
121 65 0.76
122 14 0.16
123 6 0.07
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (123 bp):
GAAAAATTTTTAAAATATTTTCAACACTTTTAAAATATTTTAAAAATTCTTTGACATGAATATTT
TAAATAAAATCACAACGTGTAACTTTATTGTTATTTTGTTATTATATATTTTGTTCTT
Found at i:8462434 original size:22 final size:20
Alignment explanation
Indices: 8462401--8462440 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
8462391 GAAATTTGTA
8462401 CAAAAATAAAATAAAATATC
1 CAAAAATAAAATAAAATATC
8462421 CAAAAATTAGAAATAAAATA
1 CAAAAA-TA-AAATAAAATA
8462441 ATAAACGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.33
21 2 0.11
22 10 0.56
ACGTcount: A:0.70, C:0.07, G:0.03, T:0.20
Consensus pattern (20 bp):
CAAAAATAAAATAAAATATC
Found at i:8464997 original size:85 final size:86
Alignment explanation
Indices: 8464901--8465067 Score: 246
Period size: 85 Copynumber: 2.0 Consensus size: 86
8464891 GTATTCAAGA
* * * *
8464901 AATATACATTGTTTTCTTAAAAAAATTATGTCGTCAGGTTTATTAAATATTTTATGAAAATAATT
1 AATATACATTGTTTACTTAAAAAAATTATATCGTCAGATTTATTAAATATTTTATAAAAATAATT
8464966 TATTTACAT-CCATTTACTTG
66 TATTTACATCCCATTTACTTG
* * * *
8464986 AATATACATTGTTTACTTCAAAAAATTTTATTGTTAGATTTATTAAATATTTTATAAAAATAATT
1 AATATACATTGTTTACTTAAAAAAATTATATCGTCAGATTTATTAAATATTTTATAAAAATAATT
*
8465051 TATTTACCTCCCATTTA
66 TATTTACATCCCATTTA
8465068 TTTATTTACA
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
85 65 0.90
86 7 0.10
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.47
Consensus pattern (86 bp):
AATATACATTGTTTACTTAAAAAAATTATATCGTCAGATTTATTAAATATTTTATAAAAATAATT
TATTTACATCCCATTTACTTG
Found at i:8469371 original size:16 final size:16
Alignment explanation
Indices: 8469350--8469388 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
8469340 GATACTATAT
* *
8469350 ATTCATGAATGATTAA
1 ATTCATAAATAATTAA
*
8469366 ATTCATAAATAATTAG
1 ATTCATAAATAATTAA
8469382 ATTCATA
1 ATTCATA
8469389 TAGTTTGAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (16 bp):
ATTCATAAATAATTAA
Found at i:8473282 original size:31 final size:31
Alignment explanation
Indices: 8473244--8473318 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
8473234 AATAGACTAG
8473244 AGGAGAATGAAAGAGTCCACAAATAAATCAA
1 AGGAGAATGAAAGAGTCCACAAATAAATCAA
* * * * *
8473275 AGGAGAATTAAAGAGTCTACAAGTAAATTAG
1 AGGAGAATGAAAGAGTCCACAAATAAATCAA
*
8473306 AGAAGAATGAAAG
1 AGGAGAATGAAAG
8473319 GGTTCACACG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.53, C:0.08, G:0.23, T:0.16
Consensus pattern (31 bp):
AGGAGAATGAAAGAGTCCACAAATAAATCAA
Found at i:8473819 original size:71 final size:71
Alignment explanation
Indices: 8473698--8473831 Score: 216
Period size: 71 Copynumber: 1.9 Consensus size: 71
8473688 AAAACTTTAA
*
8473698 TTACATGTCCCATTTTTGTTTGAGACAAATACTAAATTTGTCACTGTATACTTTGATATTAATGA
1 TTACATGTCCCACTTTTGTTTGAGACAAATACTAAATTTGTCACTGTATACTTTGATATTAATGA
8473763 ATTTTG
66 ATTTTG
* * *
8473769 TTACATGTTCCC-CTTTTGTTTGAGACAAATATTAAATTTGTCAGTTTATACTTTGATATTAAT
1 TTACATG-TCCCACTTTTGTTTGAGACAAATACTAAATTTGTCACTGTATACTTTGATATTAAT
8473832 ATGGCATCTT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
71 54 0.93
72 4 0.07
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.46
Consensus pattern (71 bp):
TTACATGTCCCACTTTTGTTTGAGACAAATACTAAATTTGTCACTGTATACTTTGATATTAATGA
ATTTTG
Found at i:8476655 original size:2 final size:2
Alignment explanation
Indices: 8476650--8476686 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
8476640 ACAAAAAACA
8476650 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8476687 CCCGAGACCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:8477642 original size:3 final size:3
Alignment explanation
Indices: 8477634--8477699 Score: 57
Period size: 3 Copynumber: 21.7 Consensus size: 3
8477624 AAAAAATGTA
* *
8477634 AAT AAT AAT AAA AAT AAT -AT AAA AAT AAAT AAGTT AA- AAT AAT AAAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AA--T AAT AAT AAT -AAT
8477681 AAT AA- AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
8477700 AAATGAAAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 14
0.74 0.06 0.20
Matches are distributed among these distances:
2 6 0.12
3 37 0.71
4 6 0.12
5 3 0.06
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:8477652 original size:15 final size:15
Alignment explanation
Indices: 8477634--8477703 Score: 69
Period size: 15 Copynumber: 4.8 Consensus size: 15
8477624 AAAAAATGTA
8477634 AATAATAATAAA-AAT
1 AATAATAA-AAATAAT
8477649 AAT-ATAAAAAT-A-
1 AATAATAAAAATAAT
*
8477661 AATAAGTTAAAATAAT
1 AATAA-TAAAAATAAT
8477677 AAATAAT-AAAATAAT
1 -AATAATAAAAATAAT
8477692 AATAATAAAAAT
1 AATAATAAAAAT
8477704 GAAAATCTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
12 3 0.06
13 5 0.11
14 16 0.34
15 17 0.36
16 1 0.02
17 5 0.11
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.27
Consensus pattern (15 bp):
AATAATAAAAATAAT
Found at i:8477664 original size:21 final size:20
Alignment explanation
Indices: 8477624--8477685 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 20
8477614 TGAAAAATCT
*
8477624 AAAAAATGTAAATAATAATA
1 AAAAAATATAAATAATAATA
8477644 AAAATAATATAAA-AATAAATA
1 AAAA-AATATAAATAAT-AATA
*
8477665 AGTTAAAATAATAAATAATAA
1 A--AAAAAT-ATAAATAATAA
8477686 AATAATAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
20 7 0.21
21 12 0.35
22 3 0.09
23 9 0.26
24 3 0.09
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
AAAAAATATAAATAATAATA
Found at i:8477695 original size:21 final size:22
Alignment explanation
Indices: 8477632--8477703 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 22
8477622 CTAAAAAATG
8477632 TAAATAATAATAAA-AATAAT-A
1 TAAATAATAA-AAATAATAATAA
8477653 TAAA-AATAAATAAGTTAA-AATAA
1 TAAATAATAAA-AA--TAATAATAA
8477676 TAAATAATAAAATAATAATAATAA
1 TAAATAAT-AAA-AATAATAATAA
8477700 -AAAT
1 TAAAT
8477704 GAAAATCTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
19 1 0.02
20 7 0.16
21 4 0.09
22 3 0.07
23 14 0.33
24 8 0.19
25 6 0.14
ACGTcount: A:0.71, C:0.00, G:0.01, T:0.28
Consensus pattern (22 bp):
TAAATAATAAAAATAATAATAA
Found at i:8477708 original size:21 final size:20
Alignment explanation
Indices: 8477634--8477709 Score: 66
Period size: 20 Copynumber: 3.7 Consensus size: 20
8477624 AAAAAATGTA
*
8477634 AATAATAATAAAAATAAT-AT
1 AATAAAAAT-AAAATAATAAT
* **
8477654 AAAAATAAATAAGTTAA-AAT
1 AATAA-AAATAAAATAATAAT
8477674 AATAAATAATAAAATAATAAT
1 AATAAA-AATAAAATAATAAT
8477695 AATAAAAATGAAAAT
1 AATAAAAAT-AAAAT
8477710 CTTTAAGAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
19 1 0.02
20 26 0.59
21 17 0.39
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (20 bp):
AATAAAAATAAAATAATAAT
Found at i:8477866 original size:20 final size:19
Alignment explanation
Indices: 8477841--8477878 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
8477831 TATATAACTT
8477841 AATGATGATAAAAGAAAAAA
1 AATGATGA-AAAAGAAAAAA
*
8477861 AATGATGAAAAGGAAAAA
1 AATGATGAAAAAGAAAAA
8477879 TGAGCTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.68, C:0.00, G:0.18, T:0.13
Consensus pattern (19 bp):
AATGATGAAAAAGAAAAAA
Found at i:8477877 original size:18 final size:17
Alignment explanation
Indices: 8477845--8477878 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8477835 TAACTTAATG
8477845 ATGATAAAAGAAAAAAA
1 ATGATAAAAGAAAAAAA
*
8477862 ATGATGAAAAGGAAAAA
1 ATGAT-AAAAGAAAAAA
8477879 TGAGCTGTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.12
Consensus pattern (17 bp):
ATGATAAAAGAAAAAAA
Found at i:8480258 original size:12 final size:11
Alignment explanation
Indices: 8480241--8480319 Score: 53
Period size: 10 Copynumber: 7.5 Consensus size: 11
8480231 ATTTTCAATT
8480241 TAAAATAATAA
1 TAAAATAATAA
8480252 GTAAAATAATAA
1 -TAAAATAATAA
8480264 TAAAA-AAT--
1 TAAAATAATAA
*
8480272 GAAAATAATAA
1 TAAAATAATAA
* *
8480283 T-AAGTAAAAA
1 TAAAATAATAA
* *
8480293 TAAAAAAAT-C
1 TAAAATAATAA
8480303 TAAAAATAA-AA
1 T-AAAATAATAA
8480314 TAAAAT
1 TAAAAT
8480320 CAAAACAAAA
Statistics
Matches: 51, Mismatches: 10, Indels: 14
0.68 0.13 0.19
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 17 0.33
11 16 0.31
12 11 0.22
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.23
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:8480280 original size:16 final size:15
Alignment explanation
Indices: 8480259--8480354 Score: 61
Period size: 16 Copynumber: 6.1 Consensus size: 15
8480249 TAAGTAAAAT
8480259 AATAATAAAAAATGAA
1 AATAA-AAAAAATGAA
* * *
8480275 AATAATAATAAGTAAA
1 AATAA-AAAAAATGAA
* *
8480291 AATAAAAAAATCTAAA
1 AATAAAAAAA-ATGAA
*
8480307 AATAAAATAAAATCAA
1 AATAAAA-AAAATGAA
*
8480323 AACAAAAATAAGATGAA
1 AATAAAAA-AA-ATGAA
8480340 AA-AAAAAAAA-GAA
1 AATAAAAAAAATGAA
8480353 AA
1 AA
8480355 ACTACGATCG
Statistics
Matches: 67, Mismatches: 9, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
13 5 0.07
14 1 0.01
15 7 0.10
16 45 0.67
17 9 0.13
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (15 bp):
AATAAAAAAAATGAA
Found at i:8480293 original size:22 final size:22
Alignment explanation
Indices: 8480256--8480298 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8480246 TAATAAGTAA
*
8480256 AATAATAATAAAAAATGAAAAT
1 AATAATAATAAAAAATAAAAAT
8480278 AATAATAAGT-AAAAATAAAAA
1 AATAATAA-TAAAAAATAAAAA
8480299 AATCTAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (22 bp):
AATAATAATAAAAAATAAAAAT
Found at i:8480324 original size:17 final size:16
Alignment explanation
Indices: 8480288--8480346 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
8480278 AATAATAAGT
*
8480288 AAAAATAAA-AAAATC
1 AAAAAAAAATAAAATC
8480303 TAAAAATAAAATAAAATC
1 -AAAAA-AAAATAAAATC
* *
8480321 AAAACAAAAATAAGATG
1 AAAA-AAAAATAAAATC
8480338 AAAAAAAAA
1 AAAAAAAAA
8480347 AAAGAAAAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
16 10 0.27
17 20 0.54
18 7 0.19
ACGTcount: A:0.78, C:0.05, G:0.03, T:0.14
Consensus pattern (16 bp):
AAAAAAAAATAAAATC
Found at i:8480347 original size:17 final size:17
Alignment explanation
Indices: 8480304--8480351 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
8480294 AAAAAAATCT
* *
8480304 AAAAATAAAATAAAATC
1 AAAAAAAAAATAAGATC
* *
8480321 AAAACAAAAATAAGATG
1 AAAAAAAAAATAAGATC
8480338 AAAAAAAAAA-AAGA
1 AAAAAAAAAATAAGA
8480352 AAAACTACGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 4 0.15
17 22 0.85
ACGTcount: A:0.79, C:0.04, G:0.06, T:0.10
Consensus pattern (17 bp):
AAAAAAAAAATAAGATC
Found at i:8482347 original size:3 final size:3
Alignment explanation
Indices: 8482341--8482373 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8482331 AATAATAATG
8482341 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8482374 TAAACTTCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8484100 original size:4 final size:4
Alignment explanation
Indices: 8484086--8484131 Score: 53
Period size: 4 Copynumber: 12.2 Consensus size: 4
8484076 AATCTAATTT
* *
8484086 CATA TATA CATA CATA CATA CAT- CATA CATG CATA C--A CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8484131 C
1 C
8484132 TTCATATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
2 2 0.06
3 3 0.09
4 30 0.86
ACGTcount: A:0.46, C:0.26, G:0.02, T:0.26
Consensus pattern (4 bp):
CATA
Found at i:8484114 original size:15 final size:14
Alignment explanation
Indices: 8484093--8484131 Score: 60
Period size: 15 Copynumber: 2.7 Consensus size: 14
8484083 TTTCATATAT
8484093 ACATACATACATAC
1 ACATACATACATAC
*
8484107 ATCATACATGCATAC
1 A-CATACATACATAC
8484122 ACATACATAC
1 ACATACATAC
8484132 TTCATATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.46, C:0.28, G:0.03, T:0.23
Consensus pattern (14 bp):
ACATACATACATAC
Found at i:8484932 original size:72 final size:72
Alignment explanation
Indices: 8484850--8485023 Score: 224
Period size: 72 Copynumber: 2.4 Consensus size: 72
8484840 AGGGTCTGAG
* * **
8484850 TTTTTCCTTCTTGGACCATGGATGGATCTGATTTTGTCGCACTATGAACTCCTTCCGACGCAGAG
1 TTTTTCCTTCTTGGGCCATGGATGGATCTGATTTTGTCGCACTATGAACTACTTCAAACGCAGAG
8484915 GTCCAAC
66 GTCCAAC
* * *
8484922 TTTTTCCTTCTTGGGCCATGGATGGAGT-TGATTTTGTCGGACTATGCACTACTTCAAACGGAGA
1 TTTTTCCTTCTTGGGCCATGGATGGA-TCTGATTTTGTCGCACTATGAACTACTTCAAACGCAGA
** *
8484986 GGTCTGAG
65 GGTCCAAC
* *
8484994 TTTTTCCTTCTTGGGGCATCGATGGATCTG
1 TTTTTCCTTCTTGGGCCATGGATGGATCTG
8485024 GGTTTGGGCG
Statistics
Matches: 88, Mismatches: 12, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
71 1 0.01
72 86 0.98
73 1 0.01
ACGTcount: A:0.18, C:0.22, G:0.25, T:0.36
Consensus pattern (72 bp):
TTTTTCCTTCTTGGGCCATGGATGGATCTGATTTTGTCGCACTATGAACTACTTCAAACGCAGAG
GTCCAAC
Found at i:8486717 original size:12 final size:12
Alignment explanation
Indices: 8486702--8486727 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8486692 TTTGACTTTC
8486702 AAATTGATTTTA
1 AAATTGATTTTA
8486714 AAATTGATTTTA
1 AAATTGATTTTA
8486726 AA
1 AA
8486728 GAATATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (12 bp):
AAATTGATTTTA
Found at i:8486765 original size:14 final size:14
Alignment explanation
Indices: 8486746--8486780 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8486736 TTAAAAGATT
8486746 AAATTAACAAATAA
1 AAATTAACAAATAA
**
8486760 AAATTAACTTATAA
1 AAATTAACAAATAA
8486774 AAATTAA
1 AAATTAA
8486781 ATTAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (14 bp):
AAATTAACAAATAA
Found at i:8486782 original size:19 final size:18
Alignment explanation
Indices: 8486760--8486803 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 18
8486750 TAACAAATAA
*
8486760 AAATTAACTTATAAAAATT
1 AAATTAAATT-TAAAAATT
8486779 AAATTAAATTTAAAAATT
1 AAATTAAATTTAAAAATT
8486797 ATAATTA
1 A-AATTA
8486804 CAACACTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATTAAATTTAAAAATT
Found at i:8493445 original size:16 final size:16
Alignment explanation
Indices: 8493408--8493449 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
8493398 TAAAATTTTT
*
8493408 AATTAAAAATAAAATT
1 AATTAAAAATAAAATC
* *
8493424 AA-TAAAAATTAGATC
1 AATTAAAAATAAAATC
8493439 AATTAAAAATA
1 AATTAAAAATA
8493450 TGAATATGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (16 bp):
AATTAAAAATAAAATC
Found at i:8493882 original size:13 final size:13
Alignment explanation
Indices: 8493864--8493891 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
8493854 TTCCTTGTTC
8493864 AACTAACATATTG
1 AACTAACATATTG
8493877 AACTAACATATTG
1 AACTAACATATTG
8493890 AA
1 AA
8493892 AGTAACTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (13 bp):
AACTAACATATTG
Found at i:8494593 original size:14 final size:14
Alignment explanation
Indices: 8494571--8494605 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8494561 AAAGCCAAAA
8494571 TTATTTTCTATTAT
1 TTATTTTCTATTAT
* *
8494585 TTCTTTTCTCTTAT
1 TTATTTTCTATTAT
8494599 TTATTTT
1 TTATTTT
8494606 TTCTAACAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.74
Consensus pattern (14 bp):
TTATTTTCTATTAT
Found at i:8501429 original size:76 final size:75
Alignment explanation
Indices: 8501339--8501502 Score: 201
Period size: 76 Copynumber: 2.2 Consensus size: 75
8501329 AATCTATATT
* * * *
8501339 AACTTTTTGCTTAGC-TCATTTTGTTTATTTTATTTTATTTTTATT-TTAGAAGAACTTT-AGAA
1 AACTTTTTTCTTAGCAT-ATTTTATTTATCTTATTTTATTTTCATTCTTA-AAGAA-TTTAAGAA
*
8501401 AAATTTGTTATTTC
63 AAA-TTGATATTTC
*
8501415 AACTTTTTTCTTAGCATTTTTTATTTATCTTATTTTATTTTCATTCTTAAAGAATTTAAGAAAAA
1 AACTTTTTTCTTAGCATATTTTATTTATCTTATTTTATTTTCATTCTTAAAGAATTTAAGAAAAA
8501480 TTGATATTTC
66 TTGATATTTC
*
8501490 AA-TTTTTTTTTAG
1 AACTTTTTTCTTAG
8501503 ACTTTGTTTC
Statistics
Matches: 78, Mismatches: 7, Indels: 8
0.84 0.08 0.09
Matches are distributed among these distances:
74 10 0.13
75 14 0.18
76 50 0.64
77 4 0.05
ACGTcount: A:0.28, C:0.08, G:0.07, T:0.57
Consensus pattern (75 bp):
AACTTTTTTCTTAGCATATTTTATTTATCTTATTTTATTTTCATTCTTAAAGAATTTAAGAAAAA
TTGATATTTC
Found at i:8501654 original size:11 final size:11
Alignment explanation
Indices: 8501640--8501690 Score: 52
Period size: 11 Copynumber: 4.6 Consensus size: 11
8501630 AAATTCACAG
*
8501640 AAAAATAAAAT
1 AAAAATAATAT
8501651 AAAAATAATAT
1 AAAAATAATAT
*
8501662 AAATAT-ATAT
1 AAAAATAATAT
8501672 AAAAATTAAGT-T
1 AAAAA-TAA-TAT
8501684 AAAAATA
1 AAAAATA
8501691 TGAAAAAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
10 8 0.24
11 18 0.53
12 7 0.21
13 1 0.03
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (11 bp):
AAAAATAATAT
Found at i:8501686 original size:22 final size:23
Alignment explanation
Indices: 8501640--8501699 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 23
8501630 AAATTCACAG
**
8501640 AAAAATAAAATAAAAA-TAATAT
1 AAAAATATGATAAAAATTAATAT
*
8501662 AAATATAT-ATAAAAATTAAGT-T
1 AAAAATATGATAAAAATTAA-TAT
8501684 AAAAATATGA-AAAAAT
1 AAAAATATGATAAAAAT
8501700 AAAAAATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
21 7 0.22
22 23 0.72
23 2 0.06
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (23 bp):
AAAAATATGATAAAAATTAATAT
Found at i:8501863 original size:13 final size:13
Alignment explanation
Indices: 8501842--8501878 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
8501832 AAACAACATT
8501842 TACCAAAAAAATA
1 TACCAAAAAAATA
* *
8501855 TATCAAAAAAATC
1 TACCAAAAAAATA
8501868 TACCAAAAAAA
1 TACCAAAAAAA
8501879 ATGGTCTACT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (13 bp):
TACCAAAAAAATA
Found at i:8502821 original size:103 final size:104
Alignment explanation
Indices: 8502565--8502874 Score: 504
Period size: 103 Copynumber: 3.0 Consensus size: 104
8502555 AACTAACTAC
* * * * *
8502565 CAAAAAGCAAATAAAACATTGTAACAACCCAACATTTGTCTTCGTTTGTAGCTTTACCTATAACG
1 CAAAAAGCAAATGAAACATTGTAGCAACCCAAAATTTTTCTTCGTTTGTAGCTTTAGCTATAACG
8502630 GGACCATGCCAA-TCCAAAACACTACATCCAAATAAATG
66 GGACCATGCCAACTCCAAAACACTACATCCAAATAAATG
* *
8502668 CAAAACG-AAATGAAACATTGTAAG-AACCCAAAATTTTTCTTCGTTTGTAGCTTTGGCTATAAC
1 CAAAAAGCAAATGAAACATTGT-AGCAACCCAAAATTTTTCTTCGTTTGTAGCTTTAGCTATAAC
8502731 GGGACCATGCCAACTCC-AAACACTACATCCAAATAAATG
65 GGGACCATGCCAACTCCAAAACACTACATCCAAATAAATG
8502770 CAAAAAGCAAATGAAACATTGTAGCAACCCAAAATTTTTCTTCGTTTGTAGCTTTAGCTATAACG
1 CAAAAAGCAAATGAAACATTGTAGCAACCCAAAATTTTTCTTCGTTTGTAGCTTTAGCTATAACG
*
8502835 GGACCATGCCAAC-CCAAAACACTACATCCAAATAAGTG
66 GGACCATGCCAACTCCAAAACACTACATCCAAATAAATG
8502873 CA
1 CA
8502875 CGTAGTTTTA
Statistics
Matches: 192, Mismatches: 10, Indels: 10
0.91 0.05 0.05
Matches are distributed among these distances:
102 93 0.48
103 99 0.52
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.25
Consensus pattern (104 bp):
CAAAAAGCAAATGAAACATTGTAGCAACCCAAAATTTTTCTTCGTTTGTAGCTTTAGCTATAACG
GGACCATGCCAACTCCAAAACACTACATCCAAATAAATG
Found at i:8505195 original size:19 final size:19
Alignment explanation
Indices: 8505173--8505210 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8505163 TTGTATCTTG
8505173 ATTAAATAAT-AAAATTAAA
1 ATTAAA-AATAAAAATTAAA
*
8505192 ATTAAAATTAAAAATTAAA
1 ATTAAAAATAAAAATTAAA
8505211 TAATAGGCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
ATTAAAAATAAAAATTAAA
Found at i:8505205 original size:13 final size:13
Alignment explanation
Indices: 8505173--8505210 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
8505163 TTGTATCTTG
8505173 ATTAAATAA-TAAA
1 ATTAAA-AATTAAA
8505186 ATT-AAAATTAAA
1 ATTAAAAATTAAA
8505198 ATTAAAAATTAAA
1 ATTAAAAATTAAA
8505211 TAATAGGCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 2 0.09
12 9 0.39
13 12 0.52
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAAAAATTAAA
Found at i:8505641 original size:85 final size:85
Alignment explanation
Indices: 8505505--8505699 Score: 216
Period size: 85 Copynumber: 2.3 Consensus size: 85
8505495 TCATGCCCAA
* * * * * * * * *
8505505 AGATCTTATAAATC-TCAAAATTAAAATAGGTTCAACTTGAAAAACTTACAAATCTTGCTTGGAG
1 AGATCTTACAAATCTTGAAACTAAAAATAGATTCAACTTAAAAAACTTACAAATCCTACTCGGAG
* *
8505569 GACTTAGAGATTATGATC-AG
66 GACTTAAAGATTA-CATCTAG
*
8505589 AGATCTTACAAATCTTGAAACTAAAAATAGATTCAA-TTCAAAAAACTTACAAATCCTACTCGGT
1 AGATCTTACAAATCTTGAAACTAAAAATAGATTCAACTT-AAAAAACTTACAAATCCTACTCGGA
*
8505653 GGACTTAAAGATTACATCTGG
65 GGACTTAAAGATTACATCTAG
* *
8505674 AGGTCTTACAAATCTCGAAACTAAAA
1 AGATCTTACAAATCTTGAAACTAAAA
8505700 CAGCTTCAAA
Statistics
Matches: 93, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
84 18 0.19
85 75 0.81
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (85 bp):
AGATCTTACAAATCTTGAAACTAAAAATAGATTCAACTTAAAAAACTTACAAATCCTACTCGGAG
GACTTAAAGATTACATCTAG
Found at i:8507326 original size:31 final size:31
Alignment explanation
Indices: 8507286--8507378 Score: 105
Period size: 32 Copynumber: 3.0 Consensus size: 31
8507276 TAAATTTATA
* * * *
8507286 TAATCAATTATTACATCACTAAATAATCAAG
1 TAATAAATTATAACTTCACTAAATAATCAAC
* * *
8507317 TAATAAATTATAATTTAACTAAACAAATCAAC
1 TAATAAATTATAACTTCACTAAA-TAATCAAC
*
8507349 TAATAAATTATAACTTCATTAAATAATCAA
1 TAATAAATTATAACTTCACTAAATAATCAA
8507379 ATCCACACAT
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
31 24 0.48
32 26 0.52
ACGTcount: A:0.53, C:0.13, G:0.01, T:0.33
Consensus pattern (31 bp):
TAATAAATTATAACTTCACTAAATAATCAAC
Found at i:8515698 original size:17 final size:16
Alignment explanation
Indices: 8515654--8515699 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 16
8515644 AATTTTTCTT
*
8515654 TTTCTTTTTATGTTT-
1 TTTCTTTTTATTTTTG
8515669 TTT-TTTTTA-TTTTG
1 TTTCTTTTTATTTTTG
8515683 TTTCTTTTTAATTTTTG
1 TTTCTTTTT-ATTTTTG
8515700 ATTTAATTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 3 0.12
14 9 0.35
15 8 0.31
16 1 0.04
17 5 0.19
ACGTcount: A:0.09, C:0.04, G:0.07, T:0.80
Consensus pattern (16 bp):
TTTCTTTTTATTTTTG
Found at i:8518335 original size:21 final size:20
Alignment explanation
Indices: 8518311--8518349 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8518301 TTTTTAATAT
8518311 TTTTATCATAAATTTTTTTCA
1 TTTTATC-TAAATTTTTTTCA
* *
8518332 TTTTTTCTCAATTTTTTT
1 TTTTATCTAAATTTTTTT
8518350 ATATATTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTATCTAAATTTTTTTCA
Found at i:8518358 original size:32 final size:33
Alignment explanation
Indices: 8518322--8518399 Score: 83
Period size: 33 Copynumber: 2.4 Consensus size: 33
8518312 TTTATCATAA
*
8518322 ATTTTTTTCA-TTT-TTTCTCAATTTTT-TTATAT
1 ATTTTTTT-ATTTTATTTCT-AATTTTTGTGATAT
8518354 ATTTTTATTATTTTATTTCTAATTTTTGTGATAT
1 ATTTTT-TTATTTTATTTCTAATTTTTGTGATAT
*
8518388 -TTTTTTTTTTTT
1 ATTTTTTTATTTT
8518400 GTATAAACTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
32 13 0.32
33 17 0.43
34 10 0.25
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (33 bp):
ATTTTTTTATTTTATTTCTAATTTTTGTGATAT
Found at i:8518634 original size:23 final size:23
Alignment explanation
Indices: 8518608--8518651 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
8518598 AAAAATATAA
*
8518608 AAAAG-ATAAAAATAATAATAAAC
1 AAAAGAAT-AAAATAACAATAAAC
*
8518631 AAAATAATAAAATAACAATAA
1 AAAAGAATAAAATAACAATAA
8518652 TGTCACACGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.89
24 2 0.11
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (23 bp):
AAAAGAATAAAATAACAATAAAC
Found at i:8527991 original size:3 final size:3
Alignment explanation
Indices: 8527983--8528029 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
8527973 GGAAAATAGG
8527983 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
8528030 TTTATATTTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:8529398 original size:377 final size:376
Alignment explanation
Indices: 8528705--8529519 Score: 1360
Period size: 377 Copynumber: 2.2 Consensus size: 376
8528695 GAGCCGTGCC
* * * *
8528705 AGTTCGGAGCTTAAGTCTCGACCTGTGACAAGTGAAAGTGGTATCAGAGCCAGCCCTATACCATT
1 AGTTCGGAGCTTAAATCTCGACCCGTGACAAGTGAAAGTGGTATCAGAGCCAACCCTAAACCATT
8528770 CGATCCACGCCAAGCACCTCGAGGGAGGTAGACAGGGTGGCCGGCTCCATGACGAGGGCGTCACG
66 CGATCCACGCCAAGCACCTCGAGGGAGGTAGACAGGGTGGCCGGCTCCATGACGAGGGCGTCACG
* *
8528835 AGGTTAGGTGCTGGAGAATGTCACGGACCTAAAGAAGAGTCCTGAATCCCACATCAAACATAATA
131 AGGTTAGGTGCGGGAGAATGTCACGGACCTAAAGAAGAGTCATGAATCCCACATCAAACATAATA
*
8528900 GGAAGGTCACTGGGGTATATAAGGGTTCACACCACCTCCGCCTTATGAGGCGCCTTTTGTAGGAC
196 GGAAGGTCACTGGGGTATATAAGGATTCACACCACCTCCGCCTTATGAGGCGCCTTTTGTAGGAC
* * *
8528965 AAAATCGTGAGGCTAGAGGGGCCAGATCGGATAATACCTCACAAGGGTGTGAATCGTGACGGTCA
261 AAAACCGTGAGGCTAGAGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAATCGTGACGGTCA
* *
8529030 GGCTGATCCGAGACGCCGGAAGGGTGAATGTTCGGGTTCCGAAACCGCGCG
326 GGCTGATCCAAGACGCCGGAAGGGTGAATGTTCGGGTCCCGAAACCGCGCG
* *
8529081 AGTTCGGAGCTTAAATCTCGACCCGTGACAAGTGGAAGTGGTATCAGAGCCAACCCTAAATCATT
1 AGTTCGGAGCTTAAATCTCGACCCGTGACAAGTGAAAGTGGTATCAGAGCCAACCCTAAACCATT
* * *
8529146 CGATTCACGCCAAGCACCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCAC
66 CGATCCACGCCAAGCACCTCGAGGGAGGTAGACAGGGTGGCCGG-CTCCATGACGAGGGCGTCAC
* *
8529211 GAGGTTGGGTGCGGGAGAATGTTACGGACCTAAAGAAGAGTCATGAATCCCACATCAAACATAAT
130 GAGGTTAGGTGCGGGAGAATGTCACGGACCTAAAGAAGAGTCATGAATCCCACATCAAACATAAT
* * *
8529276 AGGAGGGTCACTGGGGTATATAAGGATTCACACCACCTCCGCCTTGTGAGGCGTCTTTTGTAGGA
195 AGGAAGGTCACTGGGGTATATAAGGATTCACACCACCTCCGCCTTATGAGGCGCCTTTTGTAGGA
*
8529341 CAAAACCGTGAGGCTAGGGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAATCGTGACGGTC
260 CAAAACCGTGAGGCTAGAGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAATCGTGACGGTC
* * * *
8529406 AGGCTGATCCAAGACGTCGGAAGGGTGAATGTTTGGGTCCCGGAACCGCGCT
325 AGGCTGATCCAAGACGCCGGAAGGGTGAATGTTCGGGTCCCGAAACCGCGCG
* *
8529458 AGTTCAGAGCTTAAATCTCGACCCGTGACAAGTGAAAGTGGTATCAGAGCCAACCTTAAACC
1 AGTTCGGAGCTTAAATCTCGACCCGTGACAAGTGAAAGTGGTATCAGAGCCAACCCTAAACC
8529520 CACTTGTCAC
Statistics
Matches: 407, Mismatches: 31, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
376 101 0.25
377 306 0.75
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.19
Consensus pattern (376 bp):
AGTTCGGAGCTTAAATCTCGACCCGTGACAAGTGAAAGTGGTATCAGAGCCAACCCTAAACCATT
CGATCCACGCCAAGCACCTCGAGGGAGGTAGACAGGGTGGCCGGCTCCATGACGAGGGCGTCACG
AGGTTAGGTGCGGGAGAATGTCACGGACCTAAAGAAGAGTCATGAATCCCACATCAAACATAATA
GGAAGGTCACTGGGGTATATAAGGATTCACACCACCTCCGCCTTATGAGGCGCCTTTTGTAGGAC
AAAACCGTGAGGCTAGAGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAATCGTGACGGTCA
GGCTGATCCAAGACGCCGGAAGGGTGAATGTTCGGGTCCCGAAACCGCGCG
Found at i:8530600 original size:44 final size:43
Alignment explanation
Indices: 8530525--8530611 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 43
8530515 TAAAATTACT
* *
8530525 TTGTGCAATTTAGTCGCTCTTGAAATATTATCAAATAAATAAAC
1 TTGTGCAATTTAATCCCTCTTGAAATATTATCAAAT-AATAAAC
* *
8530569 TTGTTCAATTTAATCCCTCTTGTAAA-GTTATCAAATAATAAAC
1 TTGTGCAATTTAATCCCTCTTG-AAATATTATCAAATAATAAAC
8530612 CAAAATAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 7 0.18
44 28 0.74
45 3 0.08
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (43 bp):
TTGTGCAATTTAATCCCTCTTGAAATATTATCAAATAATAAAC
Found at i:8533306 original size:195 final size:197
Alignment explanation
Indices: 8532974--8533359 Score: 695
Period size: 195 Copynumber: 2.0 Consensus size: 197
8532964 TTTTTTTTTT
8532974 AAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTTCCAGT
1 AAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTTCCAGT
*
8533039 ACGTTAGTAACATTAAAAGAACTCTTTCTCACTTAGAGATTTCTTAAAGCATCTCTACTCGGAAT
66 ACGTTAGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCGGAAT
* * *
8533104 ACTTTTAGAATCTCATCTTTGGAGGCTC-GAATTTATTTTTCGTAAGAAA-ATGTCATGTTAAAA
131 ACTTTTAGAATCTCATCTTTGGAGGCTCTAAATTTACTTTTCGTAAAAAATATGTCATGTTAAAA
8533167 AA
196 AA
*
8533169 AAAATTATTCTCGAGAAAAATAAATTAAAACCTTTTTATTGAAATAATTCTTAAAATGTTCCAGT
1 AAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTTCCAGT
*
8533234 ACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCGGAAT
66 ACGTTAGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCGGAAT
8533299 ACTTTTAGAATCTCATCTTTGGAGGCTCTAAATTTACTTTTCGTAAAAAATTATGTCATGT
131 ACTTTTAGAATCTCATCTTTGGAGGCTCTAAATTTACTTTTCGTAAAAAA-TATGTCATGT
8533360 ATGCAATGCA
Statistics
Matches: 182, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
195 155 0.85
196 18 0.10
198 9 0.05
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.37
Consensus pattern (197 bp):
AAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTTCCAGT
ACGTTAGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCGGAAT
ACTTTTAGAATCTCATCTTTGGAGGCTCTAAATTTACTTTTCGTAAAAAATATGTCATGTTAAAA
AA
Found at i:8533429 original size:12 final size:12
Alignment explanation
Indices: 8533412--8533440 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8533402 TTTTTCAAAA
8533412 ATTTTATTAATT
1 ATTTTATTAATT
8533424 ATTTTATTAATT
1 ATTTTATTAATT
8533436 -TTTTA
1 ATTTTA
8533441 ATTTTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
ATTTTATTAATT
Found at i:8535371 original size:48 final size:46
Alignment explanation
Indices: 8535259--8535767 Score: 706
Period size: 48 Copynumber: 10.8 Consensus size: 46
8535249 TTGAAAGTTT
*
8535259 AAAAGGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAATTC-TCTTAG
1 AAAA-GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCATCTT-G
8535306 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTAG
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAT-TCATCTT-G
* *
8535354 AAAAGCTCTTCTCAGCAGAGGCTCAACAACTTTAAAA-TC-TCATG
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCATCTTG
* * *
8535398 AAAAGGCTCCTCTCAGTAAAGGCTCAACAACTTTAAAATTTTATCTTG
1 AAAA-GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TTCATCTTG
8535446 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTTGG
1 -AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TTCATCTT-G
8535495 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATCTCATCTTG
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAT-TCATCTTG
*
8535542 AAAAAGCTCCTCTCAGCAGAGGCTCAATAACTTTAAAATTC-TCTTG
1 -AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCATCTTG
* *
8535588 AAAAAGCTCCTTTCAGCAGAGGCTCAACAACTTTAAAATTTTATCTTGG
1 -AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TTCATCTT-G
* * *
8535637 AAAAGCCCCTCCCAGCAGAGGCTCAACAACTTTAAACTTC-TCTTG
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCATCTTG
*
8535682 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTC-TCTTAA
1 -AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCATCTT-G
*
8535729 AAAAGCTCTTCTCAGCAGAGGCTCAACAACTTTAAAATT
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATT
8535768 TTATCTTCTC
Statistics
Matches: 422, Mismatches: 25, Indels: 31
0.88 0.05 0.06
Matches are distributed among these distances:
44 5 0.01
45 34 0.08
46 159 0.38
47 15 0.04
48 203 0.48
49 6 0.01
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (46 bp):
AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCATCTTG
Found at i:8535371 original size:94 final size:92
Alignment explanation
Indices: 8535259--8535767 Score: 736
Period size: 94 Copynumber: 5.4 Consensus size: 92
8535249 TTGAAAGTTT
*
8535259 AAAAGGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTAGAAAAGCTCCTCTCAGCAG
1 AAAA-GCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTT-GAAAAGCTCCTCTCAGCAG
8535324 AGGCTCAACAACTTTAAAATCTCATCTTAG
64 AGGCTCAACAACTTTAAAATCTCATCTT-G
* * * *
8535354 AAAAGCTCTTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTCATGAAAAGGCTCCTCTCAGTAAA
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAA-GCTCCTCTCAGCAGA
* *
8535418 GGCTCAACAACTTTAAAATTTTATCTTG
65 GGCTCAACAACTTTAAAATCTCATCTTG
8535446 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTTCATCTTGGAAAAGCTCCTCTCAGC
1 -AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TTC-TCTT-GAAAAGCTCCTCTCAGC
8535511 AGAGGCTCAACAACTTTAAAATCTCATCTTG
62 AGAGGCTCAACAACTTTAAAATCTCATCTTG
* *
8535542 AAAAAGCTCCTCTCAGCAGAGGCTCAATAACTTTAAAATTCTCTTGAAAAAGCTCCTTTCAGCAG
1 -AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG-AAAAGCTCCTCTCAGCAG
* *
8535607 AGGCTCAACAACTTTAAAATTTTATCTTGG
64 AGGCTCAACAACTTTAAAATCTCATCTT-G
* * *
8535637 AAAAGCCCCTCCCAGCAGAGGCTCAACAACTTTAAACTTCTCTTGAAAAAGCTCCTCTCAGCAGA
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG-AAAAGCTCCTCTCAGCAGA
*
8535702 GGCTCAACAACTTTAAAAT-TC-TCTTAA
65 GGCTCAACAACTTTAAAATCTCATCTT-G
*
8535729 AAAAGCTCTTCTCAGCAGAGGCTCAACAACTTTAAAATT
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATT
8535768 TTATCTTCTC
Statistics
Matches: 377, Mismatches: 29, Indels: 19
0.89 0.07 0.04
Matches are distributed among these distances:
92 45 0.12
93 81 0.21
94 157 0.42
95 10 0.03
96 79 0.21
97 5 0.01
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (92 bp):
AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAGCTCCTCTCAGCAGAG
GCTCAACAACTTTAAAATCTCATCTTG
Found at i:8544165 original size:20 final size:19
Alignment explanation
Indices: 8544130--8544177 Score: 60
Period size: 20 Copynumber: 2.5 Consensus size: 19
8544120 GTGTGTGTGA
**
8544130 ATTTTTTTGCTTTTTATTT
1 ATTTTTTTTTTTTTTATTT
*
8544149 GTTTTGTTTTTTTTTTATTT
1 ATTTT-TTTTTTTTTTATTT
8544169 ATTTTTTTT
1 ATTTTTTTT
8544178 GACCTTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 8 0.33
20 16 0.67
ACGTcount: A:0.08, C:0.02, G:0.06, T:0.83
Consensus pattern (19 bp):
ATTTTTTTTTTTTTTATTT
Found at i:8544988 original size:194 final size:193
Alignment explanation
Indices: 8544655--8545029 Score: 671
Period size: 194 Copynumber: 1.9 Consensus size: 193
8544645 TTTTTTTTTT
*
8544655 AAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTTTCAGT
1 AAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTTCCAGT
*
8544720 ACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTTTACTCGGAAT
66 ACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCGGAAT
* * *
8544785 ACTTTTAGAATCTCATCTTTGGAGGCTC-GAATTTATTTTTCGTAAGAAAATATCATGTTAAAA
131 ACTTTTAGAATCTCATCTTTAGAGGCTCTAAATTTACTTTTCGTAA-AAAATATCATGTTAAAA
*
8544848 AAAATTTATTCTCGAGAAAAATAAATTAAAACCTTTTTATTGAAATAATTCTTAAAATGTTCCAG
1 AAAA-TTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTTCCAG
8544913 TACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCGGAA
65 TACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCGGAA
8544978 TACTTTTAGAATCTCATCTTTAGAGGCTCTAAATTTACTTTTCGTAAAAAAT
130 TACTTTTAGAATCTCATCTTTAGAGGCTCTAAATTTACTTTTCGTAAAAAAT
8545030 TATGTCATGT
Statistics
Matches: 174, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
193 4 0.02
194 155 0.89
195 15 0.09
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (193 bp):
AAAATTATTCTCGAGAAAAATAAATCAAAACCTTTTTATTGAAATAATTCTTAAAATGTTCCAGT
ACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTACTCGGAAT
ACTTTTAGAATCTCATCTTTAGAGGCTCTAAATTTACTTTTCGTAAAAAATATCATGTTAAAA
Found at i:8546752 original size:3 final size:3
Alignment explanation
Indices: 8546746--8546781 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
8546736 AAATCAAATA
8546746 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8546782 GGTGTTTACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8549827 original size:62 final size:61
Alignment explanation
Indices: 8549670--8549829 Score: 157
Period size: 62 Copynumber: 2.6 Consensus size: 61
8549660 CAAAATTACT
* * * *
8549670 TTTAATAATC-CCTCCATTTTTTATAAAGGAATTATTGAAGGCGTTTCAGGCCAAAAATGCC
1 TTTAATAATCTCCTTCATTTTTTATAAAGGGATTATTGAAAGCGTTTCA-GCCAAAAAAGCC
* * * *
8549731 TTCAATAAT-TCCCTAT-ATTTTTTATGATGAGATTATTGAAAGCGTTTTCTA-CCAAAAAAGCC
1 TTTAATAATCT-CCT-TCATTTTTTATAAAGGGATTATTGAAAGCG-TTTC-AGCCAAAAAAGCC
* *
8549793 TTTAATAATCTCCTTCATTTCTAATAAAGGGATTATT
1 TTTAATAATCTCCTTCATTTTTTATAAAGGGATTATT
8549830 CAAGACATTT
Statistics
Matches: 78, Mismatches: 14, Indels: 13
0.74 0.13 0.12
Matches are distributed among these distances:
61 9 0.12
62 63 0.81
63 5 0.06
64 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (61 bp):
TTTAATAATCTCCTTCATTTTTTATAAAGGGATTATTGAAAGCGTTTCAGCCAAAAAAGCC
Found at i:8550147 original size:64 final size:63
Alignment explanation
Indices: 8549990--8550163 Score: 151
Period size: 64 Copynumber: 2.7 Consensus size: 63
8549980 TATTTTTAGC
* * * *
8549990 CAAAAACGTCTTGAATAATCCCTTTCAATTTTTTATAA-GAGATTATTGAAGGTGTTTTTGGTTT
1 CAAAAACGCCTTCAATAAT-CCTTTCAATTTTTTATAAGGAGATTATTAAAGGTATTTTT-GTTT
* ** *
8550054 --AAAACTACCTTCAATAATCCCCTCTATTTTTTATAAGGAGATTATTAAAGGTAATTTTT-TTA
1 CAAAAAC-GCCTTCAATAATCCTTTCAATTTTTTATAAGGAGATTATTAAAGGT-ATTTTTGTT-
8550116 T
63 T
* * * *
8550117 CAAAAACGCCTTCAATAATCTTTTTC-ATTTTTAATGAGGGGATTATT
1 CAAAAACGCCTTCAATAATC-CTTTCAATTTTTTATAAGGAGATTATT
8550164 CAAGAGTTTT
Statistics
Matches: 88, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
62 22 0.25
63 24 0.27
64 35 0.40
65 7 0.08
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (63 bp):
CAAAAACGCCTTCAATAATCCTTTCAATTTTTTATAAGGAGATTATTAAAGGTATTTTTGTTT
Found at i:8553703 original size:18 final size:18
Alignment explanation
Indices: 8553676--8553714 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
8553666 TAATAATTAT
*
8553676 TTATTGTATTTTTAACAA
1 TTATTATATTTTTAACAA
*
8553694 TTATTATATTTTTAATAA
1 TTATTATATTTTTAACAA
8553712 TTA
1 TTA
8553715 ATAGTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (18 bp):
TTATTATATTTTTAACAA
Found at i:8553817 original size:29 final size:30
Alignment explanation
Indices: 8553775--8553855 Score: 112
Period size: 29 Copynumber: 2.7 Consensus size: 30
8553765 CCAAAAAATA
8553775 ATTAA-TTTTATTAATTAATTATGATTAAT
1 ATTAATTTTTATTAATTAATTATGATTAAT
* * *
8553804 -TTTATTTTTGTTAACTAATTATGATTAAT
1 ATTAATTTTTATTAATTAATTATGATTAAT
8553833 ATTAATTTTTATTAATTATATTA
1 ATTAATTTTTATTAATTA-ATTA
8553856 AAAATGTTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
28 3 0.07
29 22 0.51
30 14 0.33
31 4 0.09
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (30 bp):
ATTAATTTTTATTAATTAATTATGATTAAT
Found at i:8555131 original size:27 final size:27
Alignment explanation
Indices: 8555101--8555153 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
8555091 ATAAAATTAC
8555101 AATATAATATAATAAAATAATATTATA
1 AATATAATATAATAAAATAATATTATA
* * *
8555128 AATATTATTTAATTAAATAATATTAT
1 AATATAATATAATAAAATAATATTAT
8555154 CTTATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (27 bp):
AATATAATATAATAAAATAATATTATA
Found at i:8555343 original size:24 final size:25
Alignment explanation
Indices: 8555294--8555349 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
8555284 CTCATAAATT
** *
8555294 AAAATT-AATTATTTTTATTTTTAA
1 AAAATTAAATTATTTTTATACTAAA
8555318 AAAATTAAATTA-TTTTATACTAAA
1 AAAATTAAATTATTTTTATACTAAA
8555342 AAATATTA
1 AAA-ATTA
8555350 TTTTCATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 18 0.67
25 9 0.33
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
AAAATTAAATTATTTTTATACTAAA
Found at i:8560283 original size:23 final size:23
Alignment explanation
Indices: 8560251--8560309 Score: 57
Period size: 23 Copynumber: 2.5 Consensus size: 23
8560241 GGTCAGATGC
* *
8560251 TTTTTCTTTTGTATTCTGGCTTT-A
1 TTTTT-TTTTGTA-ACTGACTTTGA
*
8560275 TTTTTTTTTTTAACTGACTTTGA
1 TTTTTTTTTGTAACTGACTTTGA
8560298 TTTTTTCTTTGT
1 TTTTTT-TTTGT
8560310 GCAAGGGCTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 7 0.24
23 13 0.45
24 9 0.31
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.69
Consensus pattern (23 bp):
TTTTTTTTTGTAACTGACTTTGA
Found at i:8560378 original size:18 final size:19
Alignment explanation
Indices: 8560355--8560391 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
8560345 GAGGATTGTT
8560355 TGATTTTTTTTT-TTTTTG
1 TGATTTTTTTTTGTTTTTG
8560373 TGATTTTTTTTTGTTTTTG
1 TGATTTTTTTTTGTTTTTG
8560392 ACAGAATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.05, C:0.00, G:0.14, T:0.81
Consensus pattern (19 bp):
TGATTTTTTTTTGTTTTTG
Found at i:8560694 original size:13 final size:13
Alignment explanation
Indices: 8560669--8560701 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
8560659 TTTTTTTCTG
*
8560669 GTATTTTTTTTTT
1 GTATTTTTATTTT
8560682 GTATTTTTATTTT
1 GTATTTTTATTTT
8560695 GTATTTT
1 GTATTTT
8560702 GTACTTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.79
Consensus pattern (13 bp):
GTATTTTTATTTT
Found at i:8560699 original size:7 final size:7
Alignment explanation
Indices: 8560669--8560734 Score: 55
Period size: 7 Copynumber: 9.4 Consensus size: 7
8560659 TTTTTTTCTG
8560669 GTATTTT
1 GTATTTT
*
8560676 -TTTTTT
1 GTATTTT
8560682 GTATTTT
1 GTATTTT
8560689 -TATTTT
1 GTATTTT
8560695 GTATTTT
1 GTATTTT
8560702 GTACTTTT
1 GTA-TTTT
* *
8560710 TTTTTTT
1 GTATTTT
*
8560717 GGTATTTC
1 -GTATTTT
*
8560725 ATATTTT
1 GTATTTT
8560732 GTA
1 GTA
8560735 ATATTATTGT
Statistics
Matches: 45, Mismatches: 10, Indels: 8
0.71 0.16 0.13
Matches are distributed among these distances:
6 11 0.24
7 25 0.56
8 9 0.20
ACGTcount: A:0.14, C:0.03, G:0.11, T:0.73
Consensus pattern (7 bp):
GTATTTT
Found at i:8560714 original size:13 final size:12
Alignment explanation
Indices: 8560658--8560701 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 12
8560648 TCTGTTCTCT
8560658 TTTTTTTTCTGGTA
1 TTTTTTTT-T-GTA
8560672 TTTTTTTTTTGTA
1 -TTTTTTTTTGTA
8560685 TTTTTATTTTGTA
1 TTTTT-TTTTGTA
8560698 TTTT
1 TTTT
8560702 GTACTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.18
13 14 0.50
14 1 0.04
15 8 0.29
ACGTcount: A:0.09, C:0.02, G:0.09, T:0.80
Consensus pattern (12 bp):
TTTTTTTTTGTA
Found at i:8561433 original size:24 final size:24
Alignment explanation
Indices: 8561410--8561454 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8561400 TTTAATTAAT
*
8561410 TAAT-TAATTATATATTTATATAA
1 TAATATAATTAAATATTTATATAA
*
8561433 TAATATATTTAAATATTTATAT
1 TAATATAATTAAATATTTATAT
8561455 TTTTTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
TAATATAATTAAATATTTATATAA
Found at i:8561454 original size:16 final size:16
Alignment explanation
Indices: 8561417--8561476 Score: 50
Period size: 16 Copynumber: 3.6 Consensus size: 16
8561407 AATTAATTAA
* *
8561417 TTATATATTTATATAA
1 TTATATATTTAAATAT
*
8561433 TAATATATTTAAATAT
1 TTATATATTTAAATAT
*
8561449 TTATATTTTTTAAAAATAT
1 TTATA-TATTT--AAATAT
8561468 TT-TATATTT
1 TTATATATTT
8561477 TAAAAAATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
16 17 0.49
17 8 0.23
18 2 0.06
19 8 0.23
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTATATATTTAAATAT
Found at i:8561479 original size:18 final size:19
Alignment explanation
Indices: 8561443--8561482 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
8561433 TAATATATTT
*
8561443 AAATATTTATATTTTTTAA
1 AAATATTTATATATTTTAA
8561462 AAATATTT-TATATTTTAA
1 AAATATTTATATATTTTAA
8561480 AAA
1 AAA
8561483 ATAATATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
AAATATTTATATATTTTAA
Found at i:8561483 original size:19 final size:19
Alignment explanation
Indices: 8561443--8561485 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
8561433 TAATATATTT
*
8561443 AAATATTTATATTTTTTAA
1 AAATATTTATATTTTTAAA
8561462 AAATATTT-TATATTTTAAA
1 AAATATTTATAT-TTTTAAA
8561481 AAATA
1 AAATA
8561486 ATATTTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 3 0.14
19 19 0.86
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATATTTATATTTTTAAA
Found at i:8561495 original size:20 final size:21
Alignment explanation
Indices: 8561444--8561495 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
8561434 AATATATTTA
*
8561444 AATATTTATATTTTTTAAAAAT
1 AATATTTATA-TTTTAAAAAAT
8561466 -AT-TTTATATTTTAAAAAAT
1 AATATTTATATTTTAAAAAAT
8561485 AATATTT-TATT
1 AATATTTATATT
8561496 AATTCAGGTC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 10 0.37
20 12 0.44
21 5 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
AATATTTATATTTTAAAAAAT
Found at i:8563976 original size:11 final size:11
Alignment explanation
Indices: 8563960--8563985 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
8563950 TGTGAGATTT
8563960 TCGACAACCGA
1 TCGACAACCGA
8563971 TCGACAACCGA
1 TCGACAACCGA
8563982 TCGA
1 TCGA
8563986 GGACCACTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.35, G:0.19, T:0.12
Consensus pattern (11 bp):
TCGACAACCGA
Found at i:8564314 original size:29 final size:29
Alignment explanation
Indices: 8564255--8564315 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
8564245 GAACCAGTTT
* * **
8564255 AGATCAGGATCGAACCATGGGAACCGTCC
1 AGATCAAGATCGAACCATGAGAACCACCC
8564284 AGATCAAGATCGAACCATGAGAACCACCC
1 AGATCAAGATCGAACCATGAGAACCACCC
8564313 AGA
1 AGA
8564316 CCAAACCGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.28, G:0.23, T:0.11
Consensus pattern (29 bp):
AGATCAAGATCGAACCATGAGAACCACCC
Found at i:8572564 original size:24 final size:24
Alignment explanation
Indices: 8572536--8572592 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
8572526 AGCATTTCTG
8572536 CAAAGTCATCAGAGTCAAAGCTAT
1 CAAAGTCATCAGAGTCAAAGCTAT
* *
8572560 CAAAGTCACCAGAGTCAAATCTAT
1 CAAAGTCATCAGAGTCAAAGCTAT
*
8572584 CCAAGTCAT
1 CAAAGTCAT
8572593 AGACATCAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.40, C:0.25, G:0.14, T:0.21
Consensus pattern (24 bp):
CAAAGTCATCAGAGTCAAAGCTAT
Found at i:8573216 original size:19 final size:18
Alignment explanation
Indices: 8573194--8573229 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8573184 TCCTCTTCTT
8573194 TTTTACTCTTTTTTTTTCG
1 TTTTACT-TTTTTTTTTCG
*
8573213 TTTTTCTTTTTTTTTTC
1 TTTTACTTTTTTTTTTC
8573230 CCTATATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.03, C:0.14, G:0.03, T:0.81
Consensus pattern (18 bp):
TTTTACTTTTTTTTTTCG
Found at i:8573373 original size:11 final size:12
Alignment explanation
Indices: 8573350--8573414 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
8573340 TAAAAGCCCA
8573350 AATTTTAGTTTT
1 AATTTTAGTTTT
8573362 AATTTT-GTTTT
1 AATTTTAGTTTT
*
8573373 AGA-TTTAGATCTT
1 A-ATTTTAG-TTTT
* *
8573386 GATTTTAATTTT
1 AATTTTAGTTTT
**
8573398 TTTTTTAGTTTT
1 AATTTTAGTTTT
8573410 AATTT
1 AATTT
8573415 GGTCATAAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
11 9 0.22
12 24 0.60
13 7 0.17
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.66
Consensus pattern (12 bp):
AATTTTAGTTTT
Found at i:8575840 original size:16 final size:17
Alignment explanation
Indices: 8575809--8575841 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8575799 AAGAACATCA
8575809 TGCAAATATTATAAATCT
1 TGCAAATA-TATAAATCT
8575827 TGCAAATA-ATAAATC
1 TGCAAATATATAAATC
8575842 ATACAAGAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.33
Consensus pattern (17 bp):
TGCAAATATATAAATCT
Found at i:8575881 original size:47 final size:46
Alignment explanation
Indices: 8575774--8575881 Score: 155
Period size: 47 Copynumber: 2.3 Consensus size: 46
8575764 GTAATAAATC
* *
8575774 ATAAATCATACAAA-AATAATCATGCAAGAACATCATGCAAATATT
1 ATAAATCATACAAATAATAATCATACAAGAACATCATGCAAATATA
* *
8575819 ATAAATCTTGCAAATAATAAATCATACAAGAACATCATGCAAATATA
1 ATAAATCATACAAATAAT-AATCATACAAGAACATCATGCAAATATA
*
8575866 ATAAATCATAAAAATA
1 ATAAATCATACAAATA
8575882 GATTAACAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
45 12 0.22
46 3 0.06
47 39 0.72
ACGTcount: A:0.56, C:0.14, G:0.06, T:0.25
Consensus pattern (46 bp):
ATAAATCATACAAATAATAATCATACAAGAACATCATGCAAATATA
Found at i:8575903 original size:22 final size:22
Alignment explanation
Indices: 8575875--8575925 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
8575865 AATAAATCAT
*
8575875 AAAAATAGATTAACAATCATAC
1 AAAAATAAATTAACAATCATAC
* * *
8575897 AAAAATAAATTTATAATCATGC
1 AAAAATAAATTAACAATCATAC
8575919 AAAAATA
1 AAAAATA
8575926 TAAAAAAGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.61, C:0.10, G:0.04, T:0.25
Consensus pattern (22 bp):
AAAAATAAATTAACAATCATAC
Found at i:8576072 original size:17 final size:16
Alignment explanation
Indices: 8576050--8576098 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 16
8576040 AACAAAAAAA
8576050 AAAAGAAATA-AAATAGG
1 AAAAGAAA-AGAAA-AGG
8576067 AAAAGAAAAGAAAAGG
1 AAAAGAAAAGAAAAGG
8576083 AAAAGGAAAAGGAAAA
1 AAAA-GAAAA-GAAAA
8576099 TAAAAAAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.28
17 16 0.55
18 5 0.17
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.04
Consensus pattern (16 bp):
AAAAGAAAAGAAAAGG
Found at i:8576087 original size:6 final size:6
Alignment explanation
Indices: 8576064--8576098 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
8576054 GAAATAAAAT
8576064 AGGAAA A-GAAA A-GAAA AGGAAA AGGAAA AGGAAA A
1 AGGAAA AGGAAA AGGAAA AGGAAA AGGAAA AGGAAA A
8576099 TAAAAAAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.36
6 18 0.64
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (6 bp):
AGGAAA
Found at i:8576364 original size:19 final size:19
Alignment explanation
Indices: 8576342--8576393 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
8576332 ACCTAGATTT
* *
8576342 TGGCATAAAAAAATTCAAA
1 TGGCACAAAAAAACTCAAA
*
8576361 TGGCGCAAAAAAACTCAAA
1 TGGCACAAAAAAACTCAAA
* **
8576380 CGGTGCAAAAAAAC
1 TGGCACAAAAAAAC
8576394 CCATATTCCA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.54, C:0.17, G:0.15, T:0.13
Consensus pattern (19 bp):
TGGCACAAAAAAACTCAAA
Found at i:8576373 original size:20 final size:19
Alignment explanation
Indices: 8576348--8576393 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
8576338 ATTTTGGCAT
* *
8576348 AAAAAAATTCAAATGGCGC
1 AAAAAAACTCAAACGGCGC
*
8576367 AAAAAAACTCAAACGGTGC
1 AAAAAAACTCAAACGGCGC
8576386 AAAAAAAC
1 AAAAAAAC
8576394 CCATATTCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.59, C:0.17, G:0.13, T:0.11
Consensus pattern (19 bp):
AAAAAAACTCAAACGGCGC
Found at i:8577308 original size:43 final size:43
Alignment explanation
Indices: 8577234--8577391 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
8577224 TCCTCTTCCA
* * *
8577234 CAAAGGCTTTAAAACTTTCAAAAGATGAAATGCTCTCCCTCAC
1 CAAAGGCTTTGAAACTTTCAAAAAATAAAATGCTCTCCCTCAC
* *
8577277 CAAAAGCTTTGAAACTTTCAAAAAATAAAATGCTTCCCCCCTCCAC
1 CAAAGGCTTTGAAACTTTCAAAAAATAAAATGC-T-CTCCCT-CAC
* * * *
8577323 CAAAGGC-TTGAAACTTTCGAAAAGTAAAAT-ATTTCCC-CAC
1 CAAAGGCTTTGAAACTTTCAAAAAATAAAATGCTCTCCCTCAC
* * **
8577363 CGAAGGCCTTGAAACTTTGGAAAAATAAA
1 CAAAGGCTTTGAAACTTTCAAAAAATAAA
8577392 TGAGATAATT
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
40 9 0.09
41 19 0.20
42 3 0.03
43 30 0.31
44 1 0.01
45 26 0.27
46 9 0.09
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.24
Consensus pattern (43 bp):
CAAAGGCTTTGAAACTTTCAAAAAATAAAATGCTCTCCCTCAC
Found at i:8577359 original size:45 final size:45
Alignment explanation
Indices: 8577234--8577360 Score: 125
Period size: 45 Copynumber: 2.9 Consensus size: 45
8577224 TCCTCTTCCA
* * * * * *
8577234 CAAAGGCTTTAAAACTTTCAAAAGATGAAATGC-T-CTCCCTCAC
1 CAAAAGCTTTGAAACTTTCAAAAAATAAAATACTTCCCCCCTCAC
*
8577277 CAAAAGCTTTGAAACTTTCAAAAAATAAAATGCTTCCCCCCTCCAC
1 CAAAAGCTTTGAAACTTTCAAAAAATAAAATACTTCCCCCCT-CAC
* * * *
8577323 CAAAGGC-TTGAAACTTTCGAAAAGTAAAATATTTCCCC
1 CAAAAGCTTTGAAACTTTCAAAAAATAAAATACTTCCCC
8577361 ACCGAAGGCC
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
43 29 0.41
44 1 0.01
45 32 0.45
46 9 0.13
ACGTcount: A:0.39, C:0.26, G:0.10, T:0.25
Consensus pattern (45 bp):
CAAAAGCTTTGAAACTTTCAAAAAATAAAATACTTCCCCCCTCAC
Found at i:8579230 original size:25 final size:25
Alignment explanation
Indices: 8579202--8579251 Score: 93
Period size: 24 Copynumber: 2.0 Consensus size: 25
8579192 AAACTCACTC
8579202 TTTTTAAATTATAAAAAAAT-ATAA
1 TTTTTAAATTATAAAAAAATAATAA
8579226 TTTTTAAATTATAAAAAAATAATAA
1 TTTTTAAATTATAAAAAAATAATAA
8579251 T
1 T
8579252 AAAAAATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (25 bp):
TTTTTAAATTATAAAAAAATAATAA
Found at i:8579258 original size:24 final size:24
Alignment explanation
Indices: 8579207--8579258 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
8579197 CACTCTTTTT
***
8579207 AAATTATAAAAAAATATAATTTTT
1 AAATTATAAAAAAATATAATTAAA
8579231 AAATTATAAAAAAATAATAA-TAAA
1 AAATTATAAAAAAAT-ATAATTAAA
8579255 AAAT
1 AAAT
8579259 CTTGTACATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 20 0.83
25 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (24 bp):
AAATTATAAAAAAATATAATTAAA
Found at i:8581178 original size:16 final size:16
Alignment explanation
Indices: 8581159--8581203 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
8581149 TAATTTTATT
8581159 TTAATTAAAAATAAAA
1 TTAATTAAAAATAAAA
* *
8581175 TTAATAAAAAATTAAA
1 TTAATTAAAAATAAAA
*
8581191 TCAATTAAAAATA
1 TTAATTAAAAATA
8581204 TGAATATGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (16 bp):
TTAATTAAAAATAAAA
Found at i:8584019 original size:14 final size:15
Alignment explanation
Indices: 8583993--8584022 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8583983 GCAGAAATAC
8583993 ATAAAATGTAATAGA
1 ATAAAATGTAATAGA
8584008 ATAAAATG-AATAGA
1 ATAAAATGTAATAGA
8584022 A
1 A
8584023 AATAGTATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.63, C:0.00, G:0.13, T:0.23
Consensus pattern (15 bp):
ATAAAATGTAATAGA
Found at i:8597760 original size:36 final size:36
Alignment explanation
Indices: 8597710--8597956 Score: 299
Period size: 36 Copynumber: 6.8 Consensus size: 36
8597700 AGCGAACGTA
* * *
8597710 TCATCTTCAACCTCTGGCGTTATTATGCTAGCATCT
1 TCATCTTCACCCTCTGACGTTATTATGCAAGCATCT
8597746 TCATCTTCACCCTCTGACGTTATTATGC--G-A---
1 TCATCTTCACCCTCTGACGTTATTATGCAAGCATCT
* * *
8597776 TCATCTTCACCTTCTGACGTTGTTATGCGAGCATCT
1 TCATCTTCACCCTCTGACGTTATTATGCAAGCATCT
8597812 TCATCTTCACCCTCTGACGTTATTATGCAAGCATCT
1 TCATCTTCACCCTCTGACGTTATTATGCAAGCATCT
*
8597848 TCATCTTCACCCTCTGACATAATTATGCGTATTATGCAAGCATCT
1 TCATCTTCACCCTCTGAC--------G-TTATTATGCAAGCATCT
*
8597893 TCATCTTCACCCTCTGACGTTGTTATGCAAGCATCT
1 TCATCTTCACCCTCTGACGTTATTATGCAAGCATCT
8597929 TCATCTTCACCCTCTGACGTTATTATGC
1 TCATCTTCACCCTCTGACGTTATTATGC
8597957 GATCTAGATG
Statistics
Matches: 185, Mismatches: 11, Indels: 30
0.82 0.05 0.13
Matches are distributed among these distances:
30 26 0.14
32 1 0.01
33 2 0.01
34 1 0.01
36 119 0.64
37 1 0.01
44 1 0.01
45 34 0.18
ACGTcount: A:0.21, C:0.29, G:0.13, T:0.37
Consensus pattern (36 bp):
TCATCTTCACCCTCTGACGTTATTATGCAAGCATCT
Found at i:8597815 original size:66 final size:66
Alignment explanation
Indices: 8597709--8597855 Score: 224
Period size: 66 Copynumber: 2.2 Consensus size: 66
8597699 GAGCGAACGT
* *
8597709 ATCATCTTCAACC-TCTGGCGTTATTATGCTAGCATCTTCATCTTCACCCTCTGACGTTATTATG
1 ATCATCTTC-ACCTTCTGACGTTATTATGCGAGCATCTTCATCTTCACCCTCTGACGTTATTATG
*
8597773 CG
65 CA
*
8597775 ATCATCTTCACCTTCTGACGTTGTTATGCGAGCATCTTCATCTTCACCCTCTGACGTTATTATGC
1 ATCATCTTCACCTTCTGACGTTATTATGCGAGCATCTTCATCTTCACCCTCTGACGTTATTATGC
8597840 A
66 A
* *
8597841 AGCATCTTCATCTTC
1 ATCATCTTCACCTTC
8597856 ACCCTCTGAC
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
65 3 0.04
66 71 0.96
ACGTcount: A:0.20, C:0.29, G:0.13, T:0.38
Consensus pattern (66 bp):
ATCATCTTCACCTTCTGACGTTATTATGCGAGCATCTTCATCTTCACCCTCTGACGTTATTATGC
A
Found at i:8597884 original size:45 final size:43
Alignment explanation
Indices: 8597832--8597957 Score: 158
Period size: 45 Copynumber: 3.0 Consensus size: 43
8597822 CCTCTGACGT
8597832 TATTATGCAAGCATCTTCATCTTCACCCTCTGACATAATTATGCG
1 TATTATGCAAGCATCTTCATCTTCACCCTCTGAC-T-ATTATGCG
*
8597877 TATTATGCAAGCATCTTCATCTTCACCCTCTGAC--GT-T--G
1 TATTATGCAAGCATCTTCATCTTCACCCTCTGACTATTATGCG
8597915 --TTATGCAAGCATCTTCATCTTCACCCTCTGACGTTATTATGCG
1 TATTATGCAAGCATCTTCATCTTCACCCTCTGAC--TATTATGCG
8597958 ATCTAGATGG
Statistics
Matches: 72, Mismatches: 2, Indels: 16
0.80 0.02 0.18
Matches are distributed among these distances:
36 32 0.44
38 1 0.01
40 2 0.03
41 2 0.03
43 1 0.01
45 34 0.47
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.37
Consensus pattern (43 bp):
TATTATGCAAGCATCTTCATCTTCACCCTCTGACTATTATGCG
Done.