Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 47 of 77
Found at i:9097041 original size:46 final size:47
Alignment explanation
Indices: 9096919--9097043 Score: 141
Period size: 46 Copynumber: 2.7 Consensus size: 47
9096909 TTTTGAAATT
9096919 TTTTATTT-ATTTGTTTTATCTTTATTTATTTTTATTTATTAGATTAA
1 TTTTATTTAATTT-TTTTATCTTTATTTATTTTTATTTATTAGATTAA
* * * *
9096966 ATTTATTTAATATTTTT-TCTTTATCTTATTTTTATTT-TT-GTTTTAC
1 TTTTATTTAATTTTTTTATCTTTAT-TTATTTTTATTTATTAG-ATTAA
* *
9097012 TTTTCTTTAATTTTTTTATTTTTATTTATTTT
1 TTTTATTTAATTTTTTTATCTTTATTTATTTT
9097044 CACTTTTTTT
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
45 1 0.02
46 33 0.50
47 29 0.44
48 3 0.05
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (47 bp):
TTTTATTTAATTTTTTTATCTTTATTTATTTTTATTTATTAGATTAA
Found at i:9097064 original size:23 final size:23
Alignment explanation
Indices: 9097024--9097067 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
9097014 TTCTTTAATT
*
9097024 TTTTTATTTTTATTTATTTTCAC
1 TTTTTATTATTATTTATTTTCAC
9097047 TTTTT-TTATTATTCTATTTTC
1 TTTTTATTATTATT-TATTTTC
9097068 TTTAAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (23 bp):
TTTTTATTATTATTTATTTTCAC
Found at i:9097171 original size:61 final size:60
Alignment explanation
Indices: 9097091--9097430 Score: 469
Period size: 60 Copynumber: 5.7 Consensus size: 60
9097081 CAAAATTTTC
*
9097091 AAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAA
1 AAAAAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAA
* * *
9097152 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTC-CA
1 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCAAA
*
9097212 AAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAATTTTCAAAAA
1 AAAAAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC--AAA
9097273 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
1 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
** *
9097333 AAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC---
1 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTTCAAA
* *
9097392 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
9097431 TCCTACACAA
Statistics
Matches: 254, Mismatches: 15, Indels: 22
0.87 0.05 0.08
Matches are distributed among these distances:
58 7 0.03
59 41 0.16
60 90 0.35
61 86 0.34
62 30 0.12
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.34
Consensus pattern (60 bp):
AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
Found at i:9097199 original size:121 final size:121
Alignment explanation
Indices: 9097074--9097430 Score: 536
Period size: 121 Copynumber: 3.0 Consensus size: 121
9097064 TTTCTTTAAA
9097074 GAAAAATCAAAATTTTC-AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 GAAAAATCAAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAA
9097138 ATAAATTTTCAAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
65 ATAAATTTTCAAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
*
9097195 G-AAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 GAAAAATCAAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
9097259 TAAATTTTCAAAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
66 TAAATTTTC-AAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
*
9097316 -AAAAAT--AAATTTTCAAAAAAAGGGATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTG
1 GAAAAATCAAAATTTTCAAAAAAA--TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTT-
* *
9097377 AAAATCAAAATTTTC----AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
62 AAAAT--AAATTTTCAAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
9097431 TCCTACACAA
Statistics
Matches: 222, Mismatches: 5, Indels: 20
0.90 0.02 0.08
Matches are distributed among these distances:
119 51 0.23
120 28 0.13
121 130 0.59
122 5 0.02
124 8 0.04
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.34
Consensus pattern (121 bp):
GAAAAATCAAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
TAAATTTTCAAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
Found at i:9097434 original size:60 final size:58
Alignment explanation
Indices: 9097083--9097430 Score: 463
Period size: 61 Copynumber: 5.8 Consensus size: 58
9097073 AGAAAAATCA
*
9097083 AAATTTTC-AAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAATTTTCAAAAAAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
*
9097140 AAATTTTCAAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAATTTTC---AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
9097201 CAAAATTTCCAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT
1 --AAATTTTCAAAAAAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
9097260 AAATTTTCAAAAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAATTTTC----AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
*
9097322 AAATTTTCAAAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAATTTTCAAAAAAA--GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
* *
9097382 CAAAATTTTC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 --AAATTTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
9097431 TCCTACACAA
Statistics
Matches: 264, Mismatches: 9, Indels: 34
0.86 0.03 0.11
Matches are distributed among these distances:
57 15 0.06
58 7 0.03
59 37 0.14
60 83 0.31
61 92 0.35
62 23 0.09
63 7 0.03
ACGTcount: A:0.46, C:0.07, G:0.13, T:0.34
Consensus pattern (58 bp):
AAATTTTCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
Found at i:9097989 original size:10 final size:10
Alignment explanation
Indices: 9097955--9098077 Score: 71
Period size: 10 Copynumber: 12.4 Consensus size: 10
9097945 TTTTTTTAAT
9097955 TTTTTATTTA
1 TTTTTATTTA
*
9097965 TTTGT-TTTA
1 TTTTTATTTA
*
9097974 TCTTTATTTA
1 TTTTTATTTA
9097984 TTTTTATTTA
1 TTTTTATTTA
*
9097994 TTAGATTAGATTTA
1 TT---TT-TATTTA
*
9098008 -TTTAATATT-
1 TTTTTAT-TTA
9098017 TTTTTATCTTA
1 TTTTTAT-TTA
9098028 TTTTTA-TT-
1 TTTTTATTTA
*
9098036 TTTGT-TTTA
1 TTTTTATTTA
* *
9098045 CTTTTCTTTA
1 TTTTTATTTA
*
9098055 ATTTT-TTTA
1 TTTTTATTTA
9098064 TTTTTATTTA
1 TTTTTATTTA
9098074 TTTT
1 TTTT
9098078 CACCTTTTTT
Statistics
Matches: 88, Mismatches: 13, Indels: 24
0.70 0.10 0.19
Matches are distributed among these distances:
8 6 0.07
9 22 0.25
10 46 0.52
11 6 0.07
13 3 0.03
14 5 0.06
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:9098043 original size:22 final size:22
Alignment explanation
Indices: 9098008--9098060 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
9097998 ATTAGATTTA
*
9098008 TTTAATATTT-TTTTATCTTATT-
1 TTTAATTTTTGTTTTA-CTT-TTC
9098030 TTT-ATTTTTGTTTTACTTTTC
1 TTTAATTTTTGTTTTACTTTTC
9098051 TTTAATTTTT
1 TTTAATTTTT
9098061 TTATTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.07
21 11 0.41
22 14 0.52
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (22 bp):
TTTAATTTTTGTTTTACTTTTC
Found at i:9098059 original size:21 final size:21
Alignment explanation
Indices: 9098008--9098062 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
9097998 ATTAGATTTA
9098008 TTTAATATTTTTTTATCTTATT
1 TTTAAT-TTTTTTTATCTTATT
*
9098030 TTTATTTTTGTTTTA-CTT-TT
1 TTTAATTTT-TTTTATCTTATT
9098050 CTTTAATTTTTTT
1 -TTTAATTTTTTT
9098063 ATTTTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 5 0.17
21 14 0.48
22 10 0.34
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTAATTTTTTTTATCTTATT
Found at i:9098228 original size:59 final size:58
Alignment explanation
Indices: 9098126--9098578 Score: 513
Period size: 59 Copynumber: 7.7 Consensus size: 58
9098116 AAAATTTTTC
* * *
9098126 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
1 AAAAAAGATTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC-AA
* *
9098186 AAAAAAGGATTTTGAGAAAAAGTTGAAAGTATCAA-TTTCCTT-AAAATAAATTTTCAAAA
1 AAAAAA-GATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC--AA
* * * *
9098245 AAAAAAGATTTTTAAGGAAAAGTTGAAAGTATAAATTTTCCTTGAAAATCAAAATTTC-C
1 AAAAAAGA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCAA
* * *
9098304 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
1 AAAAAAGATTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC-AA
* *
9098364 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAATCAAAATTTCCA
1 AAAAAAGA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCAA
* * * * *
9098423 AAAAAATATTTTTAGGGAAAGTTGAATGTATCAATTTTTCTTAAAAATAAAATTTCAA
1 AAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAA
* * *
9098481 AAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAATTTCCAA
1 AAAAAAGA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-CAA
* *
9098542 AAAATA-TTTTTG-GGAAAAAGTTGAAAGTATCAATTTT
1 AAAAAAGATTTTGAGG-AAAAGTTGAAAGTATCAATTTT
9098579 TCCCTACACA
Statistics
Matches: 340, Mismatches: 37, Indels: 33
0.83 0.09 0.08
Matches are distributed among these distances:
58 74 0.22
59 156 0.46
60 80 0.24
61 23 0.07
62 7 0.02
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (58 bp):
AAAAAAGATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAA
Found at i:9098256 original size:119 final size:119
Alignment explanation
Indices: 9098126--9098578 Score: 616
Period size: 118 Copynumber: 3.8 Consensus size: 119
9098116 AAAATTTTTC
* * *
9098126 AAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCAAAAAA
1 AAAAAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTC-AAAAA
*
9098189 AAAGGATTTTGAGAAAAAGTTGAAAGTATCAA-TTTCCTT-AAAATAAATTTTCAAAA
64 AAA-TATTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAA
* * *
9098245 AAAAAAGATTTTTAAGGAAAAGTTGAAAGTATAAATTTTCCTTGAAAATCAAAATTTC-CAAAAA
1 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCAAAAAAA
* *
9098309 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
66 ATATTTTGA-GAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
*
9098364 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG-AAATCAAAATTTCCAAAAAA
1 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCAAAAAAA
* ** * * *
9098428 ATATTTTTAGGGAAAGTTGAATGTATCAATTTTTCTTAAAAATAAAATTTC-AA
66 ATATTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
* * *
9098481 AAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAATTTC-CAAAAA
1 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCAAAAAAA
*
9098545 ATATTTTTGGGAAAAAGTTGAAAGTATCAATTTT
66 ATA-TTTTGAGAAAAAGTTGAAAGTATCAATTTT
9098579 TCCCTACACA
Statistics
Matches: 303, Mismatches: 23, Indels: 17
0.88 0.07 0.05
Matches are distributed among these distances:
117 59 0.19
118 113 0.37
119 110 0.36
120 21 0.07
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (119 bp):
AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCAAAAAAA
ATATTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
Found at i:9098580 original size:118 final size:119
Alignment explanation
Indices: 9098126--9098578 Score: 654
Period size: 119 Copynumber: 3.8 Consensus size: 119
9098116 AAAATTTTTC
* * * *
9098126 AAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTCAAAAAA
1 AAAAAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCCAAAAA
* * *
9098189 AAAGGATTTT-GAGAAAAAGTTGAAAGTATCAA-TTTCCTT-AAAATAAATTTTCAAAA
65 ATA--TTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC-AAA
* *
9098245 AAAAAAGATTTTTAAGGAAAAGTTGAAAGTATAAATTTTCCTTGAAAATCAAAATTTCCAAAAAA
1 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCCAAAAAA
9098310 TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
66 TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
9098364 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG-AAATCAAAATTTCCAAAAAA
1 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC-AAAAA
* * *
9098428 ATATTTTTAGGG-AAAGTTGAATGTATCAATTTTTCTTAAAAATAAAATTTC-AA
65 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
* *
9098481 AAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCGAAATTTCCAAAAAA
1 AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCCAAAAAA
9098546 TATTTTT-GGGAAAAAGTTGAAAGTATCAATTTT
66 TATTTTTAGGG-AAAAGTTGAAAGTATCAATTTT
9098579 TCCCTACACA
Statistics
Matches: 309, Mismatches: 16, Indels: 19
0.90 0.05 0.06
Matches are distributed among these distances:
116 3 0.01
117 58 0.19
118 106 0.34
119 114 0.37
120 28 0.09
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (119 bp):
AAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCCAAAAAA
TATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
Found at i:9101529 original size:18 final size:18
Alignment explanation
Indices: 9101506--9101542 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
9101496 AAAATACAAA
*
9101506 TTAAACTTTTGGATGGCT
1 TTAAACTTTTGAATGGCT
9101524 TTAAACTTTTGAATGGCT
1 TTAAACTTTTGAATGGCT
9101542 T
1 T
9101543 CAATCCATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.11, G:0.19, T:0.46
Consensus pattern (18 bp):
TTAAACTTTTGAATGGCT
Found at i:9106958 original size:24 final size:23
Alignment explanation
Indices: 9106914--9106958 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
9106904 CAACCTTTAA
**
9106914 TAAAAAAATTGAAAATTTTGAAT
1 TAAAAAAATTGAAAAGGTTGAAT
9106937 TAAAAATAATTGAAAAGGTTGA
1 TAAAAA-AATTGAAAAGGTTGA
9106959 GATCATTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.56, C:0.00, G:0.13, T:0.31
Consensus pattern (23 bp):
TAAAAAAATTGAAAAGGTTGAAT
Found at i:9115303 original size:21 final size:18
Alignment explanation
Indices: 9115277--9115320 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 18
9115267 TTGTTTTCTA
9115277 TTTTGGTTACTGCATCTCCTG
1 TTTTGGTT--TGCA-CTCCTG
*
9115298 TTTTGGTTTGCACTGCTG
1 TTTTGGTTTGCACTCCTG
9115316 TTTTG
1 TTTTG
9115321 CTTGGTACCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 10 0.45
19 4 0.18
21 8 0.36
ACGTcount: A:0.07, C:0.18, G:0.23, T:0.52
Consensus pattern (18 bp):
TTTTGGTTTGCACTCCTG
Found at i:9120567 original size:399 final size:399
Alignment explanation
Indices: 9119829--9120609 Score: 1238
Period size: 399 Copynumber: 2.0 Consensus size: 399
9119819 TATAGAGACC
*
9119829 GAGACCAATGTGGAGCTGCCTGTTCTTGAAGCAAGATCAGTAGAGGATATTGATTTGGCTTTTAA
1 GAGACCAATGTGGAGCTGCCTGTTCTTGAAGCAAGATCAGTAGAAGATATTGATTTGGCTTTTAA
* * *
9119894 GCAACTTCATGAAGGAGTAGATCTTGAGGAAGTAATTCTTCCAAGTATGATCGAGAATCAGGAGG
66 GCAACTTCATGAAGGAGGAGATCTTGAGGAAGTAATTCTTCCAAGTATGATCGAGAATCAGCAAG
* * * * * * *
9119959 ATCATGCAGGTATCAATTCAAAATTACCTGTTGTCGAGGCTAGATCTCTGGAGGATATACGTAAT
131 ATCAGGCAGATACCAATACAAAATTACCTGTTGTCGAGGCGAGATCTCTGGAGGATATACATAAC
* * * * *
9120024 GCTTTCCAACAAGGCCCTGAGCCCAATCTAGCTGAGCAGCTACATTCCACAGACTTAAGGAATGG
196 GCTTTCCAACAAGGCCCAGAACCCAATCCAGCTGAGCAGCCAAATTCCACAGACTTAAGGAATGG
* * * * *
9120089 ATCATCAGAAGTAGAGCAGCATGATGTGGTTTGTACTAAAGAGATTGAGGTTAGTGATGCAGTCT
261 ACCATCAGAAGTAGAGCAGCATGATGTGGTATCTACTAAAGAGATTGAAGTTAGTAATGCAGTCT
* *
9120154 CTGGTCTTCAAGAAAATAGTGAGAATGCTGCTGTTGAACCAAAAAATGAATATGAAGTAGAAGAC
326 CTGGTATTCAAGAAAATAGTGAGAATGCTGCTGGTGAACCAAAAAATGAATATGAAGTAGAAGAC
9120219 ATAAAAACG
391 ATAAAAACG
* *
9120228 GAGACCAATGTGGAGTTGCTTGTTCTTGAAGCAAGATCAGTAGAAGATATTGATTTGGCTTTTAA
1 GAGACCAATGTGGAGCTGCCTGTTCTTGAAGCAAGATCAGTAGAAGATATTGATTTGGCTTTTAA
* * *
9120293 GCAACTTCATGAAGGCGGAGATGTTGAGGAAGTAATTCTTCCAAGTATGATTGAGAATCAGCAAG
66 GCAACTTCATGAAGGAGGAGATCTTGAGGAAGTAATTCTTCCAAGTATGATCGAGAATCAGCAAG
9120358 ATCAGGCAGATACCAATACAAAATTACCTGTTGTCGAGGCGAGATCTCTGGAGGATATACATAAC
131 ATCAGGCAGATACCAATACAAAATTACCTGTTGTCGAGGCGAGATCTCTGGAGGATATACATAAC
* * * * **
9120423 GCTTTCCAGCAAGGCCCAGAATCTAATCCAGCTGAGCTGCCAAATTCTTCAGACTTAAGGAATGG
196 GCTTTCCAACAAGGCCCAGAACCCAATCCAGCTGAGCAGCCAAATTCCACAGACTTAAGGAATGG
*
9120488 ACCATCAGAAGTAGAGCGGCATGATGTGGTATCTACTAAAGAGATTGAAGTTAGTAATGCAGTCT
261 ACCATCAGAAGTAGAGCAGCATGATGTGGTATCTACTAAAGAGATTGAAGTTAGTAATGCAGTCT
*
9120553 CTGGTATTCAAGAAAATAGTGAGAATGCTGCTGGTGAACCAAAAATTGAATATGAAG
326 CTGGTATTCAAGAAAATAGTGAGAATGCTGCTGGTGAACCAAAAAATGAATATGAAG
9120610 AAGCATCTGA
Statistics
Matches: 346, Mismatches: 36, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
399 346 1.00
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (399 bp):
GAGACCAATGTGGAGCTGCCTGTTCTTGAAGCAAGATCAGTAGAAGATATTGATTTGGCTTTTAA
GCAACTTCATGAAGGAGGAGATCTTGAGGAAGTAATTCTTCCAAGTATGATCGAGAATCAGCAAG
ATCAGGCAGATACCAATACAAAATTACCTGTTGTCGAGGCGAGATCTCTGGAGGATATACATAAC
GCTTTCCAACAAGGCCCAGAACCCAATCCAGCTGAGCAGCCAAATTCCACAGACTTAAGGAATGG
ACCATCAGAAGTAGAGCAGCATGATGTGGTATCTACTAAAGAGATTGAAGTTAGTAATGCAGTCT
CTGGTATTCAAGAAAATAGTGAGAATGCTGCTGGTGAACCAAAAAATGAATATGAAGTAGAAGAC
ATAAAAACG
Found at i:9125201 original size:13 final size:13
Alignment explanation
Indices: 9125183--9125208 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9125173 TCCTCTATCG
9125183 AAAAAAATAAAAT
1 AAAAAAATAAAAT
9125196 AAAAAAATAAAAT
1 AAAAAAATAAAAT
9125209 GAAAGGGCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
AAAAAAATAAAAT
Found at i:9134861 original size:30 final size:30
Alignment explanation
Indices: 9134825--9134895 Score: 115
Period size: 30 Copynumber: 2.4 Consensus size: 30
9134815 TAGGCCTACT
9134825 TCTCAGCCTCAACAGCAGCCACAGTCTCAG
1 TCTCAGCCTCAACAGCAGCCACAGTCTCAG
**
9134855 TCTCAGCCTCTGCAGCAGCCACAGTCTCAG
1 TCTCAGCCTCAACAGCAGCCACAGTCTCAG
*
9134885 CCTCAGCCTCA
1 TCTCAGCCTCA
9134896 GCCTCAGCAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.23, C:0.42, G:0.17, T:0.18
Consensus pattern (30 bp):
TCTCAGCCTCAACAGCAGCCACAGTCTCAG
Found at i:9134891 original size:6 final size:6
Alignment explanation
Indices: 9134826--9134903 Score: 57
Period size: 6 Copynumber: 13.0 Consensus size: 6
9134816 AGGCCTACTT
* ** * * * * **
9134826 CTCAGC CTCAAC AGCAGC CACAGT CTCAGT CTCAGC CTCTGC AGCAGC
1 CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC
* *
9134874 CACAGT CTCAGC CTCAGC CTCAGC CTCAGC
1 CTCAGC CTCAGC CTCAGC CTCAGC CTCAGC
9134904 AGCGGCCAAC
Statistics
Matches: 54, Mismatches: 18, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.22, C:0.44, G:0.18, T:0.17
Consensus pattern (6 bp):
CTCAGC
Found at i:9137294 original size:56 final size:57
Alignment explanation
Indices: 9137215--9137330 Score: 207
Period size: 57 Copynumber: 2.1 Consensus size: 57
9137205 CAGTTACTAC
*
9137215 TCTGTTGATTAGATTGGTGTATTAGATTT-CATTCATATAATTTGGTTACGCTAGAG
1 TCTGTTGATTAGATTGGTATATTAGATTTCCATTCATATAATTTGGTTACGCTAGAG
*
9137271 TCTGTTGATTAGATTGGTATATTAGATTTCCATTCATATAATTTGGTTAGGCTAGAG
1 TCTGTTGATTAGATTGGTATATTAGATTTCCATTCATATAATTTGGTTACGCTAGAG
9137328 TCT
1 TCT
9137331 AGACCTGAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
56 28 0.49
57 29 0.51
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.45
Consensus pattern (57 bp):
TCTGTTGATTAGATTGGTATATTAGATTTCCATTCATATAATTTGGTTACGCTAGAG
Found at i:9143026 original size:23 final size:25
Alignment explanation
Indices: 9142971--9143031 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
9142961 TTGAAAGGGT
* *
9142971 TCGGCAATGAAGACCTAAACAAGAT
1 TCGGCAATGAAGGCCTAAACAAGAG
9142996 TCGGCAATGAAGGCCTAAA-AA-AG
1 TCGGCAATGAAGGCCTAAACAAGAG
9143019 TCGGCAATGAAGG
1 TCGGCAATGAAGG
9143032 TTGAAAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
23 14 0.41
24 2 0.06
25 18 0.53
ACGTcount: A:0.41, C:0.18, G:0.26, T:0.15
Consensus pattern (25 bp):
TCGGCAATGAAGGCCTAAACAAGAG
Found at i:9143275 original size:22 final size:22
Alignment explanation
Indices: 9143244--9143285 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
9143234 TTGTCTATTC
*
9143244 TAATTTTAGAGATACAAATACT
1 TAATTCTAGAGATACAAATACT
*
9143266 TAATTCTAGAGATGCAAATA
1 TAATTCTAGAGATACAAATA
9143286 TAAATATACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.10, G:0.12, T:0.33
Consensus pattern (22 bp):
TAATTCTAGAGATACAAATACT
Found at i:9144881 original size:98 final size:98
Alignment explanation
Indices: 9144777--9144972 Score: 302
Period size: 98 Copynumber: 2.0 Consensus size: 98
9144767 TGGTCACTTC
* * * *
9144777 GATTTAAAAAAATTAATAATTAATTTAATAAATTTTTATTTAATAAATAATTGAATTGATCGAAC
1 GATTTAAAAAAATTAATAATTAATTTAATAAATTTTTATTCAACAAATAATTAAATCGATCGAAC
* *
9144842 AATTTTAAATAATCAATTATAATTAAATTGATT
66 AATTTTAAATAATCAATCATAACTAAATTGATT
* *
9144875 GATTTAAAAAAATTAATAATTAATTTAATTAATTTTTATTCAACAAATAATTAAATCGATCGAAT
1 GATTTAAAAAAATTAATAATTAATTTAATAAATTTTTATTCAACAAATAATTAAATCGATCGAAC
**
9144940 AATTTTAAATAATTGATCATAACTAAATTGATT
66 AATTTTAAATAATCAATCATAACTAAATTGATT
9144973 TAAAATCAAT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
98 88 1.00
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.42
Consensus pattern (98 bp):
GATTTAAAAAAATTAATAATTAATTTAATAAATTTTTATTCAACAAATAATTAAATCGATCGAAC
AATTTTAAATAATCAATCATAACTAAATTGATT
Found at i:9155035 original size:27 final size:28
Alignment explanation
Indices: 9154980--9155058 Score: 106
Period size: 27 Copynumber: 2.9 Consensus size: 28
9154970 TTTGGTTAAG
*
9154980 AATGATTGTTTGAAATCTTACAAGTGCA
1 AATGATTGTTTGAAATCTTACAAGGGCA
* *
9155008 AGTGATTGTTTG-AATTTTACAAGGGCA
1 AATGATTGTTTGAAATCTTACAAGGGCA
* *
9155035 AAAGATTGGTTGAAATCTTACAAG
1 AATGATTGTTTGAAATCTTACAAG
9155059 TGATGATTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 22 0.51
28 21 0.49
ACGTcount: A:0.35, C:0.09, G:0.22, T:0.34
Consensus pattern (28 bp):
AATGATTGTTTGAAATCTTACAAGGGCA
Found at i:9159680 original size:7 final size:7
Alignment explanation
Indices: 9159639--9159679 Score: 50
Period size: 6 Copynumber: 6.0 Consensus size: 7
9159629 TATTAAATTG
9159639 AATTTTT
1 AATTTTT
9159646 -ATTTTT
1 AATTTTT
9159652 AATTTTT
1 AATTTTT
*
9159659 ACATTTAT
1 A-ATTTTT
9159667 AATTTTT
1 AATTTTT
9159674 -ATTTTT
1 AATTTTT
9159680 TTATATAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
6 12 0.40
7 12 0.40
8 6 0.20
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (7 bp):
AATTTTT
Found at i:9161656 original size:21 final size:21
Alignment explanation
Indices: 9161606--9161656 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
9161596 AACGAAAAGC
9161606 AAAAAAT-AAAAGAATAACTA
1 AAAAAATAAAAAGAATAACTA
* *
9161626 AATACAA-AAAATGAATAAC-A
1 AA-AAAATAAAAAGAATAACTA
9161646 AAAAAATAAAA
1 AAAAAATAAAA
9161657 TAAAAATATC
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
19 3 0.12
20 9 0.36
21 13 0.52
ACGTcount: A:0.76, C:0.06, G:0.04, T:0.14
Consensus pattern (21 bp):
AAAAAATAAAAAGAATAACTA
Found at i:9164543 original size:32 final size:32
Alignment explanation
Indices: 9164507--9164567 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
9164497 AAAGATTAAA
9164507 TCTTAATTAAATATTGGATGAATCTTGATAAT
1 TCTTAATTAAATATTGGATGAATCTTGATAAT
* *
9164539 TCTTAATTAAATCTTGGATGATTCTTGAT
1 TCTTAATTAAATATTGGATGAATCTTGAT
9164568 GCATTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.33, C:0.08, G:0.13, T:0.46
Consensus pattern (32 bp):
TCTTAATTAAATATTGGATGAATCTTGATAAT
Found at i:9167641 original size:2 final size:2
Alignment explanation
Indices: 9167634--9167665 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
9167624 GAAAGAGAAC
9167634 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9167666 GGAAATTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9170213 original size:42 final size:42
Alignment explanation
Indices: 9170166--9170253 Score: 149
Period size: 42 Copynumber: 2.1 Consensus size: 42
9170156 GTTAGTAATA
* *
9170166 ATTTTAAGATATTCTCTCACCTTAGAAATATTCAATGAGACT
1 ATTTTAAGACATTCCCTCACCTTAGAAATATTCAATGAGACT
*
9170208 ATTTTAGGACATTCCCTCACCTTAGAAATATTCAATGAGACT
1 ATTTTAAGACATTCCCTCACCTTAGAAATATTCAATGAGACT
9170250 ATTT
1 ATTT
9170254 GTCAACTTAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (42 bp):
ATTTTAAGACATTCCCTCACCTTAGAAATATTCAATGAGACT
Found at i:9179316 original size:40 final size:39
Alignment explanation
Indices: 9179256--9179710 Score: 308
Period size: 40 Copynumber: 11.4 Consensus size: 39
9179246 TCCTCTCAGA
*
9179256 TTTTTAATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGCAC
1 TTTTAAATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGC-C
* * * *
9179296 TTTTGAATTTAAAGTTTGTTGCCTCTGATGAAAAGAGCC
1 TTTTAAATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGCC
*
9179335 TTTTAATATTTAAAGTTTGTTACCTTTGGTTAAAAGAGCAC
1 TTTTAA-ATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGC-C
* *
9179376 TTTTAAATTTAAAGTTTGTTGCCTCTGG-TAAGAGGAGCC
1 TTTTAAATTTAAAGTTTGTTGCCTTTGGTTAA-AAGAGCC
* *
9179415 TTTTAATATTTAAAGTTTGTTGCCTTTAGTTAAAAGAACAC
1 TTTTAA-ATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGC-C
* * * * * * * * *
9179456 TTTTGAATTTAAAGTTTATTGTCTCTGATGAGAGGA-AC
1 TTTTAAATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGCC
* * * * * * * *
9179494 TATTTACATTTAAAGTTTATTACCTCTAGTTAGAGGAGCG
1 T-TTTAAATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGCC
** * *
9179534 TTTTAACATTTAAAAG-TCATTGCCTCTT-G-TGAGAGAAGCC
1 TTTTAA-ATTT-AAAGTTTGTTGCCT-TTGGTTAAAAG-AGCC
* * *
9179574 TTTTTAATATTTAAAGTTTGTTACCTTTAGTTAAAGGAGCAC
1 -TTTTAA-ATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGC-C
* * * * * **
9179616 TTTTGAATTTAAAGTTCGTTGCCTTTGATGAAATGAGTT
1 TTTTAAATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGCC
* * * * * * *
9179655 TTTTAAATTTAAAGTTCGTTACCTCTAGTCAAAGGAGCT
1 TTTTAAATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGCC
*
9179694 TTTTGAATTTAAAGTTT
1 TTTTAAATTTAAAGTTT
9179711 CATAGCCTTT
Statistics
Matches: 328, Mismatches: 70, Indels: 35
0.76 0.16 0.08
Matches are distributed among these distances:
38 2 0.01
39 96 0.29
40 180 0.55
41 46 0.14
42 4 0.01
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.42
Consensus pattern (39 bp):
TTTTAAATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGCC
Found at i:9179395 original size:80 final size:80
Alignment explanation
Indices: 9179262--9179710 Score: 466
Period size: 80 Copynumber: 5.6 Consensus size: 80
9179252 CAGATTTTTA
* *
9179262 ATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGCACTTTTGAATTTAAAGTTTGTTGCCTCTGATGA
1 ATTTAAAGTTTGTTACCTTTAGTTAAAAGAGCACTTTTGAATTTAAAGTTTGTTGCCTCTGATGA
9179327 AAAGAGCCTTTTAAT
66 AAAGAGCCTTTTAAT
* * *
9179342 ATTTAAAGTTTGTTACCTTTGGTTAAAAGAGCACTTTTAAATTTAAAGTTTGTTGCCTCTGGT-A
1 ATTTAAAGTTTGTTACCTTTAGTTAAAAGAGCACTTTTGAATTTAAAGTTTGTTGCCTCTGATGA
*
9179406 AGAGGAGCCTTTTAAT
66 A-AAGAGCCTTTTAAT
* * * *
9179422 ATTTAAAGTTTGTTGCCTTTAGTTAAAAGAACACTTTTGAATTTAAAGTTTATTGTCTCTGATGA
1 ATTTAAAGTTTGTTACCTTTAGTTAAAAGAGCACTTTTGAATTTAAAGTTTGTTGCCTCTGATGA
* * * *
9179487 GAGGA-ACTATTT-AC
66 AAAGAGCCT-TTTAAT
* * * * * * **
9179501 ATTTAAAGTTTATTACCTCTAGTTAGAGGAGC-GTTTTAACATTTAAAAG-TCATTGCCTCTTG-
1 ATTTAAAGTTTGTTACCTTTAGTTAAAAGAGCACTTTTGA-ATTT-AAAGTTTGTTGCCTC-TGA
*
9179563 TG-AGAGAAGCCTTTTTAAT
63 TGAAAAG-AGCC-TTTTAAT
* * *
9179582 ATTTAAAGTTTGTTACCTTTAGTTAAAGGAGCACTTTTGAATTTAAAGTTCGTTGCCTTTGATGA
1 ATTTAAAGTTTGTTACCTTTAGTTAAAAGAGCACTTTTGAATTTAAAGTTTGTTGCCTCTGATGA
* **
9179647 AATGAGTTTTTTAA-
66 AAAGAGCCTTTTAAT
* * * * *
9179661 ATTTAAAGTTCGTTACCTCTAGTCAAAGGAGC-TTTTTGAATTTAAAGTTT
1 ATTTAAAGTTTGTTACCTTTAGTTAAAAGAGCACTTTTGAATTTAAAGTTT
9179711 CATAGCCTTT
Statistics
Matches: 310, Mismatches: 45, Indels: 30
0.81 0.12 0.08
Matches are distributed among these distances:
78 22 0.07
79 75 0.24
80 158 0.51
81 48 0.15
82 7 0.02
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.42
Consensus pattern (80 bp):
ATTTAAAGTTTGTTACCTTTAGTTAAAAGAGCACTTTTGAATTTAAAGTTTGTTGCCTCTGATGA
AAAGAGCCTTTTAAT
Found at i:9179736 original size:160 final size:159
Alignment explanation
Indices: 9179262--9179745 Score: 562
Period size: 160 Copynumber: 3.0 Consensus size: 159
9179252 CAGATTTTTA
*
9179262 ATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGCACTTTTGAATTTAAAGTTTGTTGCCTCTGATGA
1 ATTTAAAGTTTGTTGCCTTTAGTTAAAAGAGCACTTTTGAATTTAAAGTTTGTTGCCTCTGATGA
* * * *
9179327 AAAGAGCCTTTTAATATTTAAAGTTTGTTACCTTTGGTTAAAAGAGCACTTTTAAATTTAAAGTT
66 AAAGAGCTTTTTAA-ATTTAAAGTTTGTTACCTCTAGTTAAAGGAGC-CTTTTAAATTTAAAGTT
* *
9179392 T-GTTGCCTCTGGTAAGAGGAGCC-TTTTAAT
129 TCATTGCCT-TTGTAAGAGGAGCCTTTTTAAT
* * *
9179422 ATTTAAAGTTTGTTGCCTTTAGTTAAAAGAACACTTTTGAATTTAAAGTTTATTGTCTCTGATGA
1 ATTTAAAGTTTGTTGCCTTTAGTTAAAAGAGCACTTTTGAATTTAAAGTTTGTTGCCTCTGATGA
* * * * * * * *
9179487 GAGGAACTATTTACATTTAAAGTTTATTACCTCTAGTTAGAGGAGCGTTTTAACATTTAAAAG--
66 AAAGAGCTTTTTAAATTTAAAGTTTGTTACCTCTAGTTAAAGGAGCCTTTTAA-ATTT-AAAGTT
* *
9179550 TCATTGCCTCTTGTGAGAGAAGCCTTTTTAAT
129 TCATTGCCT-TTGTAAGAGGAGCCTTTTTAAT
* * * *
9179582 ATTTAAAGTTTGTTACCTTTAGTTAAAGGAGCACTTTTGAATTTAAAGTTCGTTGCCTTTGATGA
1 ATTTAAAGTTTGTTGCCTTTAGTTAAAAGAGCACTTTTGAATTTAAAGTTTGTTGCCTCTGATGA
* * * * * *
9179647 AATGAGTTTTTTAAATTTAAAGTTCGTTACCTCTAGTCAAAGGAGCTTTTTGAATTTAAAGTTTC
66 AAAGAGCTTTTTAAATTTAAAGTTTGTTACCTCTAGTTAAAGGAGCCTTTTAAATTTAAAGTTTC
* * * **
9179712 ATAGCCTTTATTTAGAGGAGCCTTTCAAAT
131 ATTGCCTTT-GTAAGAGGAGCCTTTTTAAT
9179742 ATTT
1 ATTT
9179746 TTTCAAAAAA
Statistics
Matches: 272, Mismatches: 45, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
158 11 0.04
159 55 0.20
160 206 0.76
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.42
Consensus pattern (159 bp):
ATTTAAAGTTTGTTGCCTTTAGTTAAAAGAGCACTTTTGAATTTAAAGTTTGTTGCCTCTGATGA
AAAGAGCTTTTTAAATTTAAAGTTTGTTACCTCTAGTTAAAGGAGCCTTTTAAATTTAAAGTTTC
ATTGCCTTTGTAAGAGGAGCCTTTTTAAT
Found at i:9180874 original size:24 final size:26
Alignment explanation
Indices: 9180847--9180894 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
9180837 ACATAAAGAC
9180847 TTAAAAAT-ATAA-TATATAAAAAAA
1 TTAAAAATAATAACTATATAAAAAAA
* *
9180871 TTAATAATAATAACTATTTAAAAA
1 TTAAAAATAATAACTATATAAAAA
9180895 TAAATTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 7 0.35
25 4 0.20
26 9 0.45
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (26 bp):
TTAAAAATAATAACTATATAAAAAAA
Found at i:9185950 original size:3 final size:3
Alignment explanation
Indices: 9185942--9185977 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
9185932 ATCAGTCTTG
9185942 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
9185978 GCAAGAAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:9187576 original size:11 final size:11
Alignment explanation
Indices: 9187545--9187584 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
9187535 CATTACTTTT
9187545 AATAAATTT-A
1 AATAAATTTAA
9187555 AA-AAA-TTAA
1 AATAAATTTAA
9187564 AATAAATTTAA
1 AATAAATTTAA
9187575 AATAAGATTT
1 AATAA-ATTT
9187585 GTAAATTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 2 0.08
9 6 0.23
10 5 0.19
11 9 0.35
12 4 0.15
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (11 bp):
AATAAATTTAA
Found at i:9190837 original size:25 final size:24
Alignment explanation
Indices: 9190805--9190857 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
9190795 TTTAAATTAA
* *
9190805 TTTA-AATAAAATTTGAATTTAATT
1 TTTATAATAAAATCT-AATTTAAGT
*
9190829 TTTATAATATAATCTAATTTAAGT
1 TTTATAATAAAATCTAATTTAAGT
9190853 TTTAT
1 TTTAT
9190858 TTTTTAATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 17 0.68
25 8 0.32
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (24 bp):
TTTATAATAAAATCTAATTTAAGT
Found at i:9192799 original size:12 final size:12
Alignment explanation
Indices: 9192783--9192812 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
9192773 TTAGTAAATG
9192783 ATTTAATAAAAA
1 ATTTAATAAAAA
*
9192795 TTTTAATAAAAA
1 ATTTAATAAAAA
9192807 ATTTAA
1 ATTTAA
9192813 ATCTTGATAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATTTAATAAAAA
Found at i:9193010 original size:14 final size:14
Alignment explanation
Indices: 9192988--9193034 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
9192978 TAATAAAATC
*
9192988 TTTTAATTTATTCA
1 TTTTTATTTATTCA
*
9193002 TTTTTATTT-TTTA
1 TTTTTATTTATTCA
*
9193015 TTTTTATTTACTCA
1 TTTTTATTTATTCA
*
9193029 ATTTTA
1 TTTTTA
9193035 ATAAAAAAAA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
13 12 0.44
14 15 0.56
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTTATTTATTCA
Found at i:9194620 original size:14 final size:14
Alignment explanation
Indices: 9194601--9194629 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9194591 CCTGTTGAAG
9194601 AATATATATATATA
1 AATATATATATATA
9194615 AATATATATATATA
1 AATATATATATATA
9194629 A
1 A
9194630 TGCAACACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATATATATATATA
Found at i:9201120 original size:4 final size:4
Alignment explanation
Indices: 9201113--9201143 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
9201103 ATTAATTTGA
9201113 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAA
9201144 AATGATTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
TAAT
Found at i:9201189 original size:24 final size:24
Alignment explanation
Indices: 9201138--9201190 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
9201128 TTAATTAATT
* *
9201138 AATT-AAAATGATTTCATTTGATT
1 AATTAAAAATAATTTCATTTGATC
* *
9201161 GATTAAAAATAATTTTATTTGATC
1 AATTAAAAATAATTTCATTTGATC
9201185 AATTAA
1 AATTAA
9201191 TTCATTGATT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
23 3 0.12
24 21 0.88
ACGTcount: A:0.43, C:0.04, G:0.08, T:0.45
Consensus pattern (24 bp):
AATTAAAAATAATTTCATTTGATC
Found at i:9201439 original size:4 final size:4
Alignment explanation
Indices: 9201422--9201476 Score: 53
Period size: 4 Copynumber: 14.2 Consensus size: 4
9201412 TAAAAATTAA
* * *
9201422 ATTT -TTT A-TT ATTT ATTT AATTT -TTT ATTT ATAT ATTT ATAT AATT
1 ATTT ATTT ATTT ATTT ATTT -ATTT ATTT ATTT ATTT ATTT ATTT ATTT
9201468 ATTT ATTT A
1 ATTT ATTT A
9201477 AATATTTATA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
3 9 0.22
4 28 0.68
5 4 0.10
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (4 bp):
ATTT
Found at i:9201448 original size:12 final size:12
Alignment explanation
Indices: 9201429--9201485 Score: 71
Period size: 12 Copynumber: 4.8 Consensus size: 12
9201419 TAAATTTTTT
9201429 ATTATTTATTTA
1 ATTATTTATTTA
*
9201441 ATTTTTTATTT-
1 ATTATTTATTTA
*
9201452 ATATATTTATATA
1 AT-TATTTATTTA
9201465 ATTATTTATTTA
1 ATTATTTATTTA
*
9201477 AATATTTAT
1 ATTATTTAT
9201486 ATTTTAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
11 2 0.05
12 34 0.89
13 2 0.05
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATTATTTATTTA
Found at i:9201458 original size:8 final size:8
Alignment explanation
Indices: 9201426--9201491 Score: 57
Period size: 8 Copynumber: 8.5 Consensus size: 8
9201416 AATTAAATTT
9201426 TTTAT-TA
1 TTTATATA
*
9201433 TTTATTTAA
1 TTTATAT-A
*
9201442 TTT-TTTA
1 TTTATATA
9201449 TTTATATA
1 TTTATATA
9201457 TTTATATA
1 TTTATATA
* *
9201465 ATTATTTA
1 TTTATATA
*
9201473 TTTAAATA
1 TTTATATA
9201481 TTTATAT-
1 TTTATATA
9201488 TTTA
1 TTTA
9201492 AAAATAATAT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
7 13 0.27
8 32 0.65
9 4 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (8 bp):
TTTATATA
Found at i:9201458 original size:24 final size:24
Alignment explanation
Indices: 9201422--9201487 Score: 91
Period size: 24 Copynumber: 2.8 Consensus size: 24
9201412 TAAAAATTAA
*
9201422 ATTT-TTTAT-TATTTATTTAATT
1 ATTTATTTATATATTTATATAATT
*
9201444 TTTTATTTATATATTTATATAATT
1 ATTTATTTATATATTTATATAATT
*
9201468 ATTTATTTAAATATTTATAT
1 ATTTATTTATATATTTATAT
9201488 TTTAAAAATA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
22 3 0.08
23 5 0.13
24 30 0.79
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (24 bp):
ATTTATTTATATATTTATATAATT
Found at i:9201507 original size:21 final size:22
Alignment explanation
Indices: 9201477--9201529 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
9201467 TATTTATTTA
9201477 AATA-TTTATA-TTTTAAAAAT
1 AATATTTTATATTTTTAAAAAT
9201497 AATATTTTATATTTTTAAAAAT
1 AATATTTTATATTTTTAAAAAT
9201519 ATATATTTTAT
1 A-ATATTTTAT
9201530 TAATTTCGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 11 0.37
23 9 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
AATATTTTATATTTTTAAAAAT
Found at i:9203602 original size:18 final size:18
Alignment explanation
Indices: 9203581--9203627 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
9203571 TTATTTTTCA
9203581 TTATTTATTTA-ATTATAT
1 TTATTTATTTATATTAT-T
*
9203599 TTATATATTTATATTATT
1 TTATTTATTTATATTATT
9203617 TTATATTATTT
1 TTAT-TTATTT
9203628 TTTAAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 15 0.60
19 10 0.40
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTTATTTATATTATT
Found at i:9204127 original size:23 final size:21
Alignment explanation
Indices: 9204101--9204168 Score: 55
Period size: 26 Copynumber: 2.9 Consensus size: 21
9204091 ACTATATGTG
*
9204101 TAATATATTTAATTATTTTGATT
1 TAATA-ATTTAATTATTTT-ATA
9204124 TAATTTAAATTTTAATTATTTTATA
1 TAA--T-AA-TTTAATTATTTTATA
9204149 TAATAATTTATATTTATTTT
1 TAATAATTTA-A-TTATTTT
9204169 TTTTACATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
21 4 0.11
22 3 0.08
23 11 0.29
25 7 0.18
26 13 0.34
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (21 bp):
TAATAATTTAATTATTTTATA
Found at i:9204736 original size:19 final size:20
Alignment explanation
Indices: 9204691--9204736 Score: 53
Period size: 19 Copynumber: 2.4 Consensus size: 20
9204681 ATTTAATAAA
9204691 AAATTTAAAATGAATAGATTT
1 AAATTTAAAATGAATA-ATTT
*
9204712 -AA-TTAAAATTAAT-ATTT
1 AAATTTAAAATGAATAATTT
9204729 AAATTTAA
1 AAATTTAA
9204737 TTAATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
17 4 0.18
18 2 0.09
19 14 0.64
20 2 0.09
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.41
Consensus pattern (20 bp):
AAATTTAAAATGAATAATTT
Found at i:9205658 original size:18 final size:18
Alignment explanation
Indices: 9205632--9205682 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
9205622 CGGGTTGGTC
*
9205632 TCAGTAGTTTCACTGCCT
1 TCAGCAGTTTCACTGCCT
* *
9205650 TCAGCAGTTTCATTGCTT
1 TCAGCAGTTTCACTGCCT
*
9205668 TCAACAGTTTCACTG
1 TCAGCAGTTTCACTG
9205683 GTCTCTGTGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.20, C:0.25, G:0.16, T:0.39
Consensus pattern (18 bp):
TCAGCAGTTTCACTGCCT
Found at i:9207631 original size:12 final size:12
Alignment explanation
Indices: 9207614--9207640 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9207604 TCTATCATAA
9207614 TCACAATCCATG
1 TCACAATCCATG
9207626 TCACAATCCATG
1 TCACAATCCATG
9207638 TCA
1 TCA
9207641 TTGAGTCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.33, G:0.07, T:0.26
Consensus pattern (12 bp):
TCACAATCCATG
Found at i:9210667 original size:18 final size:18
Alignment explanation
Indices: 9210638--9210674 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
9210628 GATAAATATG
9210638 ATTTTTTAAAATTTGAAAT
1 ATTTTTTAAAATTT-AAAT
9210657 ATTTTTT-AAATTTAAAT
1 ATTTTTTAAAATTTAAAT
9210674 A
1 A
9210675 ATAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
18 6 0.33
19 7 0.39
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
ATTTTTTAAAATTTAAAT
Found at i:9220305 original size:32 final size:31
Alignment explanation
Indices: 9220243--9220305 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 31
9220233 TAATTTGATT
* * *
9220243 TGAATTTTTGTATATATAAATTATATATAAA
1 TGAATTTTTATATATATAAATTAAAAATAAA
9220274 TGAATTTATTATATATA-AAAGTTAAAAATAAA
1 TGAATTT-TTATATATATAAA-TTAAAAATAAA
9220306 AATTATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 10 0.37
32 17 0.63
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (31 bp):
TGAATTTTTATATATATAAATTAAAAATAAA
Found at i:9221061 original size:21 final size:21
Alignment explanation
Indices: 9221034--9221164 Score: 81
Period size: 21 Copynumber: 6.3 Consensus size: 21
9221024 AATATAATTT
9221034 TAATTTTGATAACCTTTGATA
1 TAATTTTGATAACCTTTGATA
* * * *
9221055 CAATTTTGGTAACTTTTGCTA
1 TAATTTTGATAACCTTTGATA
* *
9221076 TTAGTTTGATAA-CTTATGATA
1 TAATTTTGATAACCTT-TGATA
* **
9221097 TAATTTTG---ACCATCAATA
1 TAATTTTGATAACCTTTGATA
* **
9221115 TAGTTTTGATAATTTTTGATA
1 TAATTTTGATAACCTTTGATA
* * *
9221136 AAATTTTGATAACCTATTGGTG
1 TAATTTTGATAACCT-TTGATA
9221158 TAATTTT
1 TAATTTT
9221165 AGTAACATTT
Statistics
Matches: 76, Mismatches: 28, Indels: 11
0.66 0.24 0.10
Matches are distributed among these distances:
18 11 0.14
19 2 0.03
20 2 0.03
21 51 0.67
22 10 0.13
ACGTcount: A:0.31, C:0.08, G:0.12, T:0.48
Consensus pattern (21 bp):
TAATTTTGATAACCTTTGATA
Found at i:9221566 original size:22 final size:22
Alignment explanation
Indices: 9221535--9221640 Score: 99
Period size: 22 Copynumber: 4.8 Consensus size: 22
9221525 AATCAAAAAT
*
9221535 TTATGAATGATTTATTATTAAA
1 TTATTAATGATTTATTATTAAA
* *
9221557 TTATTGATGATTTACTATTAAA
1 TTATTAATGATTTATTATTAAA
** *
9221579 TTGCTAATGA-TTAGTTATAAAA
1 TTATTAATGATTTA-TTATTAAA
* *
9221601 TTA-TAACTAATTTATTATTAAT
1 TTATTAA-TGATTTATTATTAAA
*
9221623 TTATTAATAATTTATTAT
1 TTATTAATGATTTATTAT
9221641 AGAAAATTTC
Statistics
Matches: 68, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
21 6 0.09
22 56 0.82
23 6 0.09
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.51
Consensus pattern (22 bp):
TTATTAATGATTTATTATTAAA
Found at i:9221622 original size:11 final size:11
Alignment explanation
Indices: 9221608--9221640 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
9221598 AAATTATAAC
9221608 TAATTTATTAT
1 TAATTTATTAT
*
9221619 TAATTTATTAA
1 TAATTTATTAT
9221630 TAATTTATTAT
1 TAATTTATTAT
9221641 AGAAAATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (11 bp):
TAATTTATTAT
Found at i:9221733 original size:43 final size:43
Alignment explanation
Indices: 9221686--9221767 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 43
9221676 TTATCATTGA
* * *
9221686 TTACAACTAAGTTATTATTAATTCACTAT-TAAATTATCAAAAT
1 TTACAACTAAATTATCAATAATTCAC-ATCTAAATTATCAAAAT
* *
9221729 TTACATCTAAATTATCAATAATTTACATCTAAATTATCA
1 TTACAACTAAATTATCAATAATTCACATCTAAATTATCA
9221768 GTAATTTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 2 0.06
43 31 0.94
ACGTcount: A:0.44, C:0.13, G:0.01, T:0.41
Consensus pattern (43 bp):
TTACAACTAAATTATCAATAATTCACATCTAAATTATCAAAAT
Found at i:9221754 original size:22 final size:22
Alignment explanation
Indices: 9221671--9221774 Score: 106
Period size: 22 Copynumber: 4.8 Consensus size: 22
9221661 TAATTGACTG
* * *
9221671 CTAAATTATCATTGA-TTACAA
1 CTAAATTATCAATAATTTACAT
* * * *
9221692 CTAAGTTATTATTAATTCACTAT
1 CTAAATTATCAATAATTTAC-AT
9221715 -TAAATTATCAA-AATTTACAT
1 CTAAATTATCAATAATTTACAT
9221735 CTAAATTATCAATAATTTACAT
1 CTAAATTATCAATAATTTACAT
*
9221757 CTAAATTATCAGTAATTT
1 CTAAATTATCAATAATTT
9221775 TTTATTATCT
Statistics
Matches: 69, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
20 2 0.03
21 29 0.42
22 37 0.54
23 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (22 bp):
CTAAATTATCAATAATTTACAT
Found at i:9221818 original size:22 final size:21
Alignment explanation
Indices: 9221761--9221824 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 21
9221751 TTACATCTAA
* *
9221761 ATTATCAGTAATTTTTTATTAT
1 ATTATCA-TGATTTATTATTAT
* *
9221783 CTTATTATGCATTTATTATTAT
1 ATTATCATG-ATTTATTATTAT
*
9221805 ATTATCATTGATTTACTATT
1 ATTATCA-TGATTTATTATT
9221825 TAATTTTTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 30 0.91
23 2 0.06
ACGTcount: A:0.30, C:0.08, G:0.05, T:0.58
Consensus pattern (21 bp):
ATTATCATGATTTATTATTAT
Found at i:9221939 original size:22 final size:22
Alignment explanation
Indices: 9221876--9221969 Score: 77
Period size: 22 Copynumber: 4.3 Consensus size: 22
9221866 ACTAAATAAC
*
9221876 CATGATTTATTATCAAGTTA-T
1 CATGATTTATTATTAAGTTATT
*
9221897 CACTGATTTA-TATTAAATTATT
1 CA-TGATTTATTATTAAGTTATT
* *
9221919 TATGATTTATTGTTAAGTTATT
1 CATGATTTATTATTAAGTTATT
** *
9221941 -ATTGATAAACTATTAAGTTATT
1 CA-TGATTTATTATTAAGTTATT
*
9221963 AATGATT
1 CATGATT
9221970 AACTACTGCT
Statistics
Matches: 58, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
21 18 0.31
22 39 0.67
23 1 0.02
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.50
Consensus pattern (22 bp):
CATGATTTATTATTAAGTTATT
Found at i:9221973 original size:22 final size:22
Alignment explanation
Indices: 9221890--9222049 Score: 78
Period size: 22 Copynumber: 7.4 Consensus size: 22
9221880 ATTTATTATC
* * *
9221890 AAGTTATCACTGATTTA-TATT
1 AAGTTATTAATGATTAACTATT
* * * * *
9221911 AAATTATTTATGATTTATTGTT
1 AAGTTATTAATGATTAACTATT
* *
9221933 AAGTTATTATTGATAAACTATT
1 AAGTTATTAATGATTAACTATT
9221955 AAGTTATTAATGATTAACTACTGCT
1 AAGTTATTAATGATTAACTA-T--T
* * * *
9221980 AAATTA-TATTTATTCACT-TT
1 AAGTTATTAATGATTAACTATT
*
9222000 AAGTT-TTAATGATTAATTATT
1 AAGTTATTAATGATTAACTATT
* * * * *
9222021 AAATTA-TCATTATTTACTACT
1 AAGTTATTAATGATTAACTATT
9222042 AAGTTATT
1 AAGTTATT
9222050 TATAATTTAT
Statistics
Matches: 101, Mismatches: 30, Indels: 15
0.69 0.21 0.10
Matches are distributed among these distances:
20 13 0.13
21 34 0.34
22 38 0.38
23 1 0.01
24 9 0.09
25 6 0.06
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.49
Consensus pattern (22 bp):
AAGTTATTAATGATTAACTATT
Found at i:9222034 original size:41 final size:44
Alignment explanation
Indices: 9221953--9222049 Score: 112
Period size: 41 Copynumber: 2.2 Consensus size: 44
9221943 TGATAAACTA
9221953 TTAAGTTATTAATGATTAACTACTGCTAAATTATATTTATTCACT
1 TTAAGTTATTAATGATTAACTACT-CTAAATTATATTTATTCACT
* *
9221998 TTAAGTT-TTAATGATTAATTA-T-TAAATTATCA-TTATTTACT
1 TTAAGTTATTAATGATTAACTACTCTAAATTAT-ATTTATTCACT
*
9222039 ACTAAGTTATT
1 -TTAAGTTATT
9222050 TATAATTTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
41 16 0.35
42 7 0.15
43 3 0.07
44 13 0.28
45 7 0.15
ACGTcount: A:0.36, C:0.08, G:0.06, T:0.49
Consensus pattern (44 bp):
TTAAGTTATTAATGATTAACTACTCTAAATTATATTTATTCACT
Found at i:9222132 original size:22 final size:22
Alignment explanation
Indices: 9222099--9222157 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
9222089 ACTAAAACTG
*
9222099 ATTTACTT-TTAAGTTATTACTA
1 ATTTA-TTATTAAGTTATCACTA
* *
9222121 ATTT-TTAATTAAATTATCATTA
1 ATTTATT-ATTAAGTTATCACTA
9222143 ATTTATTATTAAGTT
1 ATTTATTATTAAGTT
9222158 TTTAATTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
20 2 0.07
22 26 0.87
23 2 0.07
ACGTcount: A:0.36, C:0.05, G:0.03, T:0.56
Consensus pattern (22 bp):
ATTTATTATTAAGTTATCACTA
Found at i:9222602 original size:87 final size:88
Alignment explanation
Indices: 9222486--9222674 Score: 231
Period size: 87 Copynumber: 2.2 Consensus size: 88
9222476 TACTAAGTTG
* ** * * *
9222486 TTAATAATTTACTATTAAATTATTAATGATTTATTACTAATTTATGAATGATTT-TTCATTAAGT
1 TTAATGATTTACTATTAAATTATTAATGATTTACCACTAAGTTATGAATGATTTATT-ATAAAAT
*
9222550 TATGAA-TGGTTTACTATTAACTTA
65 TAT-AACTGATTTACTATTAACTTA
* * *
9222574 TTAATGATTT-CTATTAAATTATTGATGATTTACCACTAAGTTATTAATGATTTATTGTAAAATT
1 TTAATGATTTACTATTAAATTATTAATGATTTACCACTAAGTTATGAATGATTTATTATAAAATT
*
9222638 ATAACTGATTTACTATTAATTTA
66 ATAACTGATTTACTATTAACTTA
*
9222661 CTAATGATTTACTA
1 TTAATGATTTACTA
9222675 AAAAGTTATC
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
86 2 0.02
87 70 0.81
88 14 0.16
ACGTcount: A:0.37, C:0.07, G:0.08, T:0.49
Consensus pattern (88 bp):
TTAATGATTTACTATTAAATTATTAATGATTTACCACTAAGTTATGAATGATTTATTATAAAATT
ATAACTGATTTACTATTAACTTA
Found at i:9222623 original size:22 final size:22
Alignment explanation
Indices: 9222455--9222683 Score: 167
Period size: 22 Copynumber: 10.5 Consensus size: 22
9222445 ATAATTGAAA
* * * *
9222455 ATTAAGTTATCAGTTATTTAAT
1 ATTAAGTTATTAATGATTTACT
* * *
9222477 ACTAAGTTGTTAATAATTTACT
1 ATTAAGTTATTAATGATTTACT
* *
9222499 ATTAAATTATTAATGATTTATT
1 ATTAAGTTATTAATGATTTACT
* * * *
9222521 ACTAATTTATGAATGATTT-TT
1 ATTAAGTTATTAATGATTTACT
* *
9222542 CATTAAGTTATGAATGGTTTACT
1 -ATTAAGTTATTAATGATTTACT
*
9222565 ATTAACTTATTAATGATTT-CT
1 ATTAAGTTATTAATGATTTACT
* * *
9222586 ATTAAATTATTGATGATTTACC
1 ATTAAGTTATTAATGATTTACT
* *
9222608 ACTAAGTTATTAATGATTTATT
1 ATTAAGTTATTAATGATTTACT
* * *
9222630 GTAAAATTA-TAACTGATTTACT
1 ATTAAGTTATTAA-TGATTTACT
* *
9222652 ATTAATTTACTAATGATTTACT
1 ATTAAGTTATTAATGATTTACT
**
9222674 AAAAAGTTAT
1 ATTAAGTTAT
9222684 CAACGACTAA
Statistics
Matches: 161, Mismatches: 41, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
21 24 0.15
22 133 0.83
23 4 0.02
ACGTcount: A:0.37, C:0.07, G:0.09, T:0.48
Consensus pattern (22 bp):
ATTAAGTTATTAATGATTTACT
Found at i:9222810 original size:22 final size:22
Alignment explanation
Indices: 9222697--9223120 Score: 88
Period size: 22 Copynumber: 19.5 Consensus size: 22
9222687 CGACTAACTA
* *
9222697 ATTTATTATTAAATTATTAATG
1 ATTTACTACTAAATTATTAATG
* *
9222719 ATTTA-TAACTAAGTTATTAATA
1 ATTTACT-ACTAAATTATTAATG
** * * *
9222741 ATTTGTTA-TAATGTTATTAGTA
1 ATTTACTACTAA-ATTATTAATG
* *
9222763 ATTTA-TAGCTAAGTTA-TCA--
1 ATTTACTA-CTAAATTATTAATG
9222782 ATTTACTACTAAATTATTAATG
1 ATTTACTACTAAATTATTAATG
** * *
9222804 ATTTACTGTTATATT-TTTATG
1 ATTTACTACTAAATTATTAATG
* * ** * *
9222825 TATTTATTATTATGTTATCATTG
1 -ATTTACTACTAAATTATTAATG
* *
9222848 ATTTACTACTTAATT-TTAAATA
1 ATTTACTACTAAATTATT-AATG
* **
9222870 ATTTACTA-TAAAATTATCACCG
1 ATTTACTACT-AAATTATTAATG
* *
9222892 ATTTACTACTAAATTATTTATA
1 ATTTACTACTAAATTATTAATG
* * * * *
9222914 ATTCACTACCAAGTTATTACTA
1 ATTTACTACTAAATTATTAATG
* **
9222936 ATTTA-TATTAAATTATGCATG
1 ATTTACTACTAAATTATTAATG
* * ***
9222957 ATTTA-TAATTAAGTTATCGCTG
1 ATTTACT-ACTAAATTATTAATG
* ** ** *
9222979 ATTAACTA-TCATGTTATCGATA
1 ATTTACTACT-AAATTATTAATG
*
9223001 ATTTACTACTAAATTA-TACTG
1 ATTTACTACTAAATTATTAATG
**
9223022 ATTTACTTTTAAATT-TTCAATG
1 ATTTACTACTAAATTATT-AATG
* * *
9223044 A-TTAATAACTAAATTATCAATT
1 ATTTACT-ACTAAATTATTAATG
* * * * *
9223066 ATTTA-TGTCTAATTTATCATTA
1 ATTTACT-ACTAAATTATTAATG
* * *
9223088 ATTTATTACTAAGTTATTTATG
1 ATTTACTACTAAATTATTAATG
9223110 ATTTACTACTA
1 ATTTACTACTA
9223121 TCAATTAATT
Statistics
Matches: 291, Mismatches: 86, Indels: 50
0.68 0.20 0.12
Matches are distributed among these distances:
19 12 0.04
20 4 0.01
21 49 0.17
22 210 0.72
23 16 0.05
ACGTcount: A:0.37, C:0.09, G:0.06, T:0.48
Consensus pattern (22 bp):
ATTTACTACTAAATTATTAATG
Found at i:9223167 original size:44 final size:43
Alignment explanation
Indices: 9223119--9223218 Score: 103
Period size: 44 Copynumber: 2.3 Consensus size: 43
9223109 GATTTACTAC
9223119 TATCAATTAATTACTAGTAAACTAAAAATT-ATTTACTATTAAGT
1 TATCAA-TAATTACTA-TAAACTAAAAATTAATTTACTATTAAGT
* * * * ** *
9223163 TATCACTAATTTACTATTAATTTATCATTAATTTATTATTAAGT
1 TATCAATAA-TTACTATAAACTAAAAATTAATTTACTATTAAGT
9223207 TATCAATAATTA
1 TATCAATAATTA
9223219 ACCACTAAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
43 14 0.30
44 32 0.70
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.46
Consensus pattern (43 bp):
TATCAATAATTACTATAAACTAAAAATTAATTTACTATTAAGT
Found at i:9223174 original size:22 final size:22
Alignment explanation
Indices: 9223149--9223235 Score: 102
Period size: 22 Copynumber: 4.0 Consensus size: 22
9223139 ACTAAAAATT
9223149 ATTTACTATTAAGTTATCACTA
1 ATTTACTATTAAGTTATCACTA
* *
9223171 ATTTACTATTAATTTATCATTA
1 ATTTACTATTAAGTTATCACTA
* *
9223193 ATTTATTATTAAGTTATCAATA
1 ATTTACTATTAAGTTATCACTA
* * * *
9223215 ATTAACCACTAAATTATCACT
1 ATTTACTATTAAGTTATCACT
9223236 TTTTTTGTTA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 54 1.00
ACGTcount: A:0.39, C:0.13, G:0.02, T:0.46
Consensus pattern (22 bp):
ATTTACTATTAAGTTATCACTA
Found at i:9223185 original size:11 final size:10
Alignment explanation
Indices: 9223149--9223209 Score: 50
Period size: 11 Copynumber: 5.6 Consensus size: 10
9223139 ACTAAAAATT
9223149 ATTTACTATTA
1 ATTTA-TATTA
* *
9223160 AGTTATCACTA
1 ATTTAT-ATTA
9223171 ATTTACTATTA
1 ATTTA-TATTA
9223182 ATTTATCATTA
1 ATTTAT-ATTA
9223193 ATTTATTATTA
1 ATTTA-TATTA
*
9223204 AGTTAT
1 ATTTAT
9223210 CAATAATTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
10 3 0.07
11 36 0.88
12 2 0.05
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.52
Consensus pattern (10 bp):
ATTTATATTA
Found at i:9223232 original size:44 final size:44
Alignment explanation
Indices: 9223149--9223233 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
9223139 ACTAAAAATT
* * * * *
9223149 ATTTACTATTAAGTTATCACTAATTTACTATTAATTTATCATTA
1 ATTTACTATTAAGTTATCAATAATTAACCACTAAATTATCATTA
*
9223193 ATTTATTATTAAGTTATCAATAATTAACCACTAAATTATCA
1 ATTTACTATTAAGTTATCAATAATTAACCACTAAATTATCA
9223234 CTTTTTTTGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (44 bp):
ATTTACTATTAAGTTATCAATAATTAACCACTAAATTATCATTA
Found at i:9223299 original size:22 final size:21
Alignment explanation
Indices: 9223273--9223344 Score: 72
Period size: 22 Copynumber: 3.3 Consensus size: 21
9223263 TTTGTTTTGC
*
9223273 ATTTACAATTATATTATAATTG
1 ATTTACAATTATATTATTA-TG
* *
9223295 ATTTACCATTATAGTATTATG
1 ATTTACAATTATATTATTATG
**
9223316 TATTTATTATTATATTATTACTG
1 -ATTTACAATTATATTATTA-TG
9223339 ATTTAC
1 ATTTAC
9223345 TCAAAAATTA
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
21 2 0.05
22 37 0.90
23 2 0.05
ACGTcount: A:0.35, C:0.07, G:0.06, T:0.53
Consensus pattern (21 bp):
ATTTACAATTATATTATTATG
Found at i:9227321 original size:28 final size:29
Alignment explanation
Indices: 9227265--9227333 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 29
9227255 AAATTAAATT
* *
9227265 TAAATAAATTAATAAAAATTAAATATTTA
1 TAAATAAATTTATAAAAATTAAAAATTTA
* *
9227294 TAAATAAATTTAT-TAATTTAAAAATTTA
1 TAAATAAATTTATAAAAATTAAAAATTTA
9227322 TAAA-AATATTTA
1 TAAATAA-ATTTA
9227334 AGTTGAATTA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.06
28 21 0.60
29 12 0.34
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (29 bp):
TAAATAAATTTATAAAAATTAAAAATTTA
Found at i:9227867 original size:24 final size:26
Alignment explanation
Indices: 9227820--9227867 Score: 64
Period size: 24 Copynumber: 1.9 Consensus size: 26
9227810 TAATCTAATA
**
9227820 ATAAAAAATTCATTTATTTTAAATTT
1 ATAAAAAATTCATTTATTACAAATTT
9227846 ATAAAAAA-T-ATTTATTACAAAT
1 ATAAAAAATTCATTTATTACAAAT
9227868 ATTTTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 11 0.55
25 1 0.05
26 8 0.40
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (26 bp):
ATAAAAAATTCATTTATTACAAATTT
Found at i:9235296 original size:65 final size:65
Alignment explanation
Indices: 9235215--9235347 Score: 239
Period size: 65 Copynumber: 2.0 Consensus size: 65
9235205 AGAATGTGCC
9235215 GAGCAAATTAATCAATTAACAGGAACTCTTATGTCATAAAATTTGCTGTACTAATAAAAACTGAA
1 GAGCAAATTAATCAATTAACAGGAACTCTTATGTCATAAAATTTGCTGTACTAATAAAAACTGAA
* * *
9235280 GAGCAAATTAATCAATTAACAGGAACTCTTATGTCATAAGATTTGTTGTACTACTAAAAACTGAA
1 GAGCAAATTAATCAATTAACAGGAACTCTTATGTCATAAAATTTGCTGTACTAATAAAAACTGAA
9235345 GAG
1 GAG
9235348 GTAAATAGCT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (65 bp):
GAGCAAATTAATCAATTAACAGGAACTCTTATGTCATAAAATTTGCTGTACTAATAAAAACTGAA
Found at i:9236635 original size:18 final size:18
Alignment explanation
Indices: 9236612--9236647 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
9236602 CTCTGCAGAA
9236612 TTCATGACTTTAGGCTTC
1 TTCATGACTTTAGGCTTC
9236630 TTCATGACTTTAGGCTTC
1 TTCATGACTTTAGGCTTC
9236648 AGAGTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (18 bp):
TTCATGACTTTAGGCTTC
Found at i:9237484 original size:53 final size:52
Alignment explanation
Indices: 9237425--9237544 Score: 134
Period size: 53 Copynumber: 2.3 Consensus size: 52
9237415 ATAAGTATAT
* * *
9237425 AAACTTGTCTATTAAAAATCCACTTTCTCTTA-TAATTTTTCTTCTGTAAGTCC
1 AAACTTGTCTATTAAAAATCCACTTTCTCTTAGAAATTTTT-TTCTATAAAT-C
* * **
9237478 AAACTTGCCTATTAAAAATTCTTTTTCTCTTAGAAATTTTTTTCTATAAATC
1 AAACTTGTCTATTAAAAATCCACTTTCTCTTAGAAATTTTTTTCTATAAATC
* *
9237530 AAATTTATCTATTAA
1 AAACTTGTCTATTAA
9237545 GAATTTTACT
Statistics
Matches: 56, Mismatches: 10, Indels: 3
0.81 0.14 0.04
Matches are distributed among these distances:
52 13 0.23
53 36 0.64
54 7 0.12
ACGTcount: A:0.33, C:0.17, G:0.04, T:0.47
Consensus pattern (52 bp):
AAACTTGTCTATTAAAAATCCACTTTCTCTTAGAAATTTTTTTCTATAAATC
Found at i:9239123 original size:10 final size:11
Alignment explanation
Indices: 9239108--9239144 Score: 51
Period size: 10 Copynumber: 3.5 Consensus size: 11
9239098 GTGGTTAAAA
9239108 TATTTATTT-T
1 TATTTATTTCT
9239118 TATTTATTTCT
1 TATTTATTTCT
9239129 T-TTATATTTCT
1 TATT-TATTTCT
9239140 TATTT
1 TATTT
9239145 CTCAATATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
10 11 0.46
11 11 0.46
12 2 0.08
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (11 bp):
TATTTATTTCT
Found at i:9246548 original size:21 final size:21
Alignment explanation
Indices: 9246509--9246548 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
9246499 CAACATTTCT
*
9246509 TTTTAGTTTTTTTTTCTCCTC
1 TTTTAGTTTTTTTTACTCCTC
9246530 TTTT-GTTTTTTTATACTCC
1 TTTTAGTTTTTTT-TACTCC
9246549 AGCTCAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.07, C:0.17, G:0.05, T:0.70
Consensus pattern (21 bp):
TTTTAGTTTTTTTTACTCCTC
Found at i:9257085 original size:18 final size:18
Alignment explanation
Indices: 9257058--9257093 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
9257048 TTTCAACTCT
9257058 GAAGCCTAAAGTCATGAA
1 GAAGCCTAAAGTCATGAA
*
9257076 GAAGCGTAAAGTCATGAA
1 GAAGCCTAAAGTCATGAA
9257094 TTCTGCAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.14, G:0.25, T:0.17
Consensus pattern (18 bp):
GAAGCCTAAAGTCATGAA
Found at i:9258568 original size:3 final size:3
Alignment explanation
Indices: 9258560--9258590 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
9258550 ATTTTGGGTT
*
9258560 TTA TTA TTA TTT TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
9258591 GGATAAAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:9261944 original size:14 final size:15
Alignment explanation
Indices: 9261925--9261963 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
9261915 ATAATATTTA
9261925 ATAATTTTAAAAATT
1 ATAATTTTAAAAATT
* *
9261940 A-AATTTTAACACTT
1 ATAATTTTAAAAATT
9261954 ATAATTTTAA
1 ATAATTTTAA
9261964 TCATTATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (15 bp):
ATAATTTTAAAAATT
Found at i:9261970 original size:15 final size:14
Alignment explanation
Indices: 9261925--9261971 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
9261915 ATAATATTTA
*
9261925 ATAATTTTAAAAATT
1 ATAATTTT-AACATT
9261940 A-AATTTTAACACTT
1 ATAATTTTAACA-TT
9261954 ATAATTTTAATCATT
1 ATAATTTTAA-CATT
9261969 ATA
1 ATA
9261972 TTAGATTGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
13 3 0.11
14 9 0.32
15 14 0.50
16 2 0.07
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTTTAACATT
Found at i:9262335 original size:30 final size:30
Alignment explanation
Indices: 9262301--9262363 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
9262291 ATTTTTAATG
*
9262301 TAAAAAATATATAT-TTTAAAATATAAAAAA
1 TAAAAAATATAAATGTTTAAAATA-AAAAAA
* *
9262331 TAAAAATTTTAAATGTTTAAAATAAAAAAA
1 TAAAAAATATAAATGTTTAAAATAAAAAAA
9262361 TAA
1 TAA
9262364 TTTTAAAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 20 0.69
31 9 0.31
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (30 bp):
TAAAAAATATAAATGTTTAAAATAAAAAAA
Found at i:9262358 original size:52 final size:51
Alignment explanation
Indices: 9262256--9262371 Score: 126
Period size: 53 Copynumber: 2.3 Consensus size: 51
9262246 TACAAGCATT
* * * * * * **
9262256 AATAAATTTAAATTTTATAAAATTAAAATTTCATAATTTTTAATGTAAAAA
1 AATAATTTTAAAATATAAAAAATAAAAATTTCATAATGTTTAAAATAAAAA
*
9262307 ATATATATTTTAAAATATAAAAAATAAAAATTTTA-AATGTTTAAAATAAAAA
1 A-ATA-ATTTTAAAATATAAAAAATAAAAATTTCATAATGTTTAAAATAAAAA
9262359 AATAATTTTAAAA
1 AATAATTTTAAAA
9262372 CATTCTAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
50 9 0.17
51 4 0.07
52 18 0.33
53 23 0.43
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.40
Consensus pattern (51 bp):
AATAATTTTAAAATATAAAAAATAAAAATTTCATAATGTTTAAAATAAAAA
Found at i:9262382 original size:52 final size:53
Alignment explanation
Indices: 9262274--9262374 Score: 127
Period size: 52 Copynumber: 2.0 Consensus size: 53
9262264 TAAATTTTAT
* * ** *
9262274 AAAATTAAAATTTCATAATTTTTAATGTAAAAAATATATATTTTAAAATATAA
1 AAAATAAAAATTTCATAATGTTTAAAATAAAAAATATATATTTTAAAACATAA
*
9262327 AAAATAAAAATTTTA-AATGTTTAAAATAAAAAA-ATA-ATTTTAAAACAT
1 AAAATAAAAATTTCATAATGTTTAAAATAAAAAATATATATTTTAAAACAT
9262375 TCTAAAAAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
50 11 0.26
51 3 0.07
52 15 0.36
53 13 0.31
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (53 bp):
AAAATAAAAATTTCATAATGTTTAAAATAAAAAATATATATTTTAAAACATAA
Found at i:9264229 original size:4 final size:4
Alignment explanation
Indices: 9264220--9264244 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
9264210 TGTTTCAACA
9264220 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
9264245 TGGTCCTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:9269731 original size:33 final size:35
Alignment explanation
Indices: 9269689--9269760 Score: 103
Period size: 38 Copynumber: 2.0 Consensus size: 35
9269679 GGCCATGGCT
9269689 AGAATTGATC-G-CGGTGAGGTGGGGTGAGTAAGG
1 AGAATTGATCGGACGGTGAGGTGGGGTGAGTAAGG
9269722 AGAATTGATCGAGGGACGGTGAGGTGGGGTGAGTAAGG
1 AGAATTGATC---GGACGGTGAGGTGGGGTGAGTAAGG
9269760 A
1 A
9269761 TGTAAATAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
33 10 0.29
37 1 0.03
38 23 0.68
ACGTcount: A:0.26, C:0.06, G:0.49, T:0.19
Consensus pattern (35 bp):
AGAATTGATCGGACGGTGAGGTGGGGTGAGTAAGG
Found at i:9271457 original size:14 final size:14
Alignment explanation
Indices: 9271424--9271457 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
9271414 AATATTTTGA
*
9271424 TATTTAAATATTTT
1 TATTTAAATAATTT
9271438 TA-TTAAATAATTT
1 TATTTAAATAATTT
9271451 TATTTAA
1 TATTTAA
9271458 TTTGTTTCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATTTAAATAATTT
Found at i:9272214 original size:17 final size:17
Alignment explanation
Indices: 9272189--9272222 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9272179 AATAATATAT
*
9272189 TATTTTTTAATATAAAA
1 TATTATTTAATATAAAA
9272206 TATTATTTAATATAAAA
1 TATTATTTAATATAAAA
9272223 ATAAAATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATTATTTAATATAAAA
Found at i:9277688 original size:2 final size:2
Alignment explanation
Indices: 9277681--9277709 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
9277671 GTTAATAATT
9277681 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9277710 AATGAACACT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9278109 original size:40 final size:40
Alignment explanation
Indices: 9278049--9278125 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
9278039 TTCTTTAACC
*
9278049 AATACAGTAATTTGGGTAGTTGCAGAAGTAATTCTATTCA
1 AATACAGTAATTAGGGTAGTTGCAGAAGTAATTCTATTCA
* *
9278089 AATATAGTAATTAGGGTAGTTGCAGGAGTAATTCTAT
1 AATACAGTAATTAGGGTAGTTGCAGAAGTAATTCTAT
9278126 AATTTTTGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (40 bp):
AATACAGTAATTAGGGTAGTTGCAGAAGTAATTCTATTCA
Found at i:9278773 original size:14 final size:15
Alignment explanation
Indices: 9278747--9278781 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
9278737 ATGAGCAAAT
9278747 ATAAAAGTAAAATAA
1 ATAAAAGTAAAATAA
9278762 ATAAAA-TAAAATAA
1 ATAAAAGTAAAATAA
9278776 A-AAAAG
1 ATAAAAG
9278782 AAAGAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 4 0.21
14 9 0.47
15 6 0.32
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (15 bp):
ATAAAAGTAAAATAA
Found at i:9279177 original size:3 final size:3
Alignment explanation
Indices: 9279169--9279208 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
9279159 TGGATCTTTA
9279169 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
9279209 CAAAAAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:9284845 original size:3 final size:3
Alignment explanation
Indices: 9284839--9284877 Score: 60
Period size: 3 Copynumber: 12.7 Consensus size: 3
9284829 AGAAGAAATG
*
9284839 AAT AAT AATT AAT AAT AAT AAT AAT AAT AAT AAC AAT AA
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
9284878 CCATATATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:9287044 original size:2 final size:2
Alignment explanation
Indices: 9286994--9287025 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
9286984 TCTCTCTCTC
*
9286994 TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9287026 AACCTCACTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9287782 original size:31 final size:32
Alignment explanation
Indices: 9287729--9287796 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 32
9287719 AATATGTAAT
* * *
9287729 TAAAATTTATTTATTTGTTTATTATATACTAA
1 TAAATTTTATTTATTTGATTATTATATAATAA
*
9287761 TAAATTTTATTTATTT-ATTATTTTATAATAA
1 TAAATTTTATTTATTTGATTATTATATAATAA
*
9287792 AAAAT
1 TAAAT
9287797 AAAATAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
31 16 0.52
32 15 0.48
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (32 bp):
TAAATTTTATTTATTTGATTATTATATAATAA
Found at i:9288277 original size:2 final size:2
Alignment explanation
Indices: 9288270--9288299 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9288260 TGGGACCACA
9288270 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9288300 GTTTTAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9289576 original size:12 final size:12
Alignment explanation
Indices: 9289556--9289585 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
9289546 AAGAAATATA
*
9289556 TTTATTATTTTT
1 TTTAGTATTTTT
9289568 TTTAGTATTTTT
1 TTTAGTATTTTT
9289580 TTTAGT
1 TTTAGT
9289586 TTTGAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.07, T:0.77
Consensus pattern (12 bp):
TTTAGTATTTTT
Found at i:9293009 original size:15 final size:15
Alignment explanation
Indices: 9292986--9293073 Score: 51
Period size: 15 Copynumber: 5.9 Consensus size: 15
9292976 TCAGAACCTT
*
9292986 GGATCTTAGGGTTTA
1 GGATTTTAGGGTTTA
**
9293001 GGATTTTAGATTTTTTA
1 GGATTTTAG--GGTTTA
* *
9293018 GG-GTTTAGGATTTA
1 GGATTTTAGGGTTTA
*
9293032 GGATTTTGGGGTTT-
1 GGATTTTAGGGTTTA
9293046 GAGATTTT-GGGTTTTA
1 G-GATTTTAGGG-TTTA
9293062 -G-TTTTAGGGTTT
1 GGATTTTAGGGTTT
9293074 TTAGGGTTTA
Statistics
Matches: 57, Mismatches: 9, Indels: 16
0.70 0.11 0.20
Matches are distributed among these distances:
13 7 0.12
14 14 0.25
15 25 0.44
16 5 0.09
17 6 0.11
ACGTcount: A:0.17, C:0.01, G:0.32, T:0.50
Consensus pattern (15 bp):
GGATTTTAGGGTTTA
Found at i:9293018 original size:24 final size:24
Alignment explanation
Indices: 9292991--9293038 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
9292981 ACCTTGGATC
9292991 TTAGGGTTTAGGATTTTA-GATTTT
1 TTAGGGTTTAGGA-TTTAGGATTTT
9293015 TTAGGGTTTAGGATTTAGGATTTT
1 TTAGGGTTTAGGATTTAGGATTTT
9293039 GGGGTTTGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 4 0.17
24 19 0.83
ACGTcount: A:0.21, C:0.00, G:0.27, T:0.52
Consensus pattern (24 bp):
TTAGGGTTTAGGATTTAGGATTTT
Found at i:9293060 original size:22 final size:22
Alignment explanation
Indices: 9292986--9293062 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
9292976 TCAGAACCTT
*
9292986 GGATCTTAGGGTTTAGGATTTTA
1 GGATTTTAGGGTTTAGGA-TTTA
9293009 -GATTTTTTAGGGTTTAGGATTTA
1 GGA--TTTTAGGGTTTAGGATTTA
* *
9293032 GGATTTTGGGGTTT-GAGATTTT
1 GGATTTTAGGGTTTAG-GATTTA
*
9293054 GGGTTTTAG
1 GGATTTTAG
9293063 TTTTAGGGTT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
21 1 0.02
22 24 0.53
23 4 0.09
24 16 0.36
ACGTcount: A:0.18, C:0.01, G:0.32, T:0.48
Consensus pattern (22 bp):
GGATTTTAGGGTTTAGGATTTA
Found at i:9293074 original size:14 final size:14
Alignment explanation
Indices: 9293035--9293103 Score: 50
Period size: 14 Copynumber: 4.8 Consensus size: 14
9293025 GGATTTAGGA
* *
9293035 TTTTGGGGTTTGAG
1 TTTTAGGGTTTTAG
9293049 ATTTT-GGGTTTTAG
1 -TTTTAGGGTTTTAG
9293063 TTTTAGGGTTTTTAGG
1 TTTTAGGG-TTTTA-G
* * * *
9293079 GTTTAAGATTTTAA
1 TTTTAGGGTTTTAG
9293093 TTTTAGGGTTT
1 TTTTAGGGTTT
9293104 AAGGGTTTAG
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
13 4 0.09
14 19 0.44
15 14 0.33
16 6 0.14
ACGTcount: A:0.16, C:0.00, G:0.29, T:0.55
Consensus pattern (14 bp):
TTTTAGGGTTTTAG
Found at i:9293112 original size:21 final size:21
Alignment explanation
Indices: 9293072--9293117 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
9293062 GTTTTAGGGT
*
9293072 TTTTAGGGTTTAAGATTTTAA
1 TTTTAGGGTTTAAGAGTTTAA
* *
9293093 TTTTAGGGTTTAAGGGTTTAG
1 TTTTAGGGTTTAAGAGTTTAA
9293114 TTTT
1 TTTT
9293118 GAAGTTTGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.24, T:0.54
Consensus pattern (21 bp):
TTTTAGGGTTTAAGAGTTTAA
Found at i:9293155 original size:14 final size:13
Alignment explanation
Indices: 9293129--9293191 Score: 56
Period size: 14 Copynumber: 4.5 Consensus size: 13
9293119 AAGTTTGGAG
*
9293129 GATTTAAGGTTTC
1 GATTTTAGGTTTC
9293142 GATTTTAGGATTTC
1 GATTTTAGG-TTTC
9293156 GATTTTATGGTTT-
1 GATTTTA-GGTTTC
9293169 GATGTTTTAGGGTTTC
1 GA--TTTTA-GGTTTC
*
9293185 AATTTTA
1 GATTTTA
9293192 AGATTTAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
13 10 0.24
14 19 0.45
15 12 0.29
16 1 0.02
ACGTcount: A:0.21, C:0.05, G:0.22, T:0.52
Consensus pattern (13 bp):
GATTTTAGGTTTC
Found at i:9293249 original size:29 final size:28
Alignment explanation
Indices: 9293145--9293562 Score: 153
Period size: 29 Copynumber: 14.6 Consensus size: 28
9293135 AGGTTTCGAT
* * *
9293145 TTTAGGATTTCGATTTTATGGTTTGATGT
1 TTTAGGATTTTGATTTTA-GGTTTGAAGG
* ** * *
9293174 TTTAGGGTTTCAATTTTAAGATTTAAAGGG
1 TTTAGGATTTTGATTTT-AGGTTTGAA-GG
* *
9293204 TTAAAGG-TTTT-AGTTTTAGGTTTGGAGG
1 TT-TAGGATTTTGA-TTTTAGGTTTGAAGG
9293232 ATTTAGGATTTTGATTTTA-----G--GG
1 -TTTAGGATTTTGATTTTAGGTTTGAAGG
* *
9293254 TTTAGGGTTTTGATTTTAAGGTTTGAAAG
1 TTTAGGATTTTGATTTT-AGGTTTGAAGG
9293283 TTT-GGAGTTTTGATTTTAGAGTTT-AGAGG
1 TTTAGGA-TTTTGATTTTAG-GTTTGA-AGG
*
9293312 ATTTAAGG--TTTAATTTTAGGTTTG-AGAG
1 -TTT-AGGATTTTGATTTTAGGTTTGAAG-G
* * *
9293340 TTTAGGGTTTCG-TTCTTATGGTTTATAAGG
1 TTTAGGATTTTGATT-TTA-GGTTT-GAAGG
* *
9293370 TTTAGG-GTTTCATTTCATA-GTTTGAAGGG
1 TTTAGGATTTTGATTT--TAGGTTTGAA-GG
* *
9293399 TTTAGGGTTTTGTTTTTAGGGTTTGAAAGG
1 TTTAGGATTTTGATTTTA-GGTTTG-AAGG
9293429 TTTAGGATTTTG-TGTTTAGGGTTTGAAAGG
1 TTTAGGATTTTGAT-TTTA-GGTTTG-AAGG
* *
9293459 TTTAGGGA--TTAATTTTAGAGTTTAAAGGG
1 TTTA-GGATTTTGATTTTAG-GTTTGAA-GG
*
9293488 TTTAGAGA-TTT-ATTTTAGGGTTTGGAGGG
1 TTTAG-GATTTTGATTTTA-GGTTT-GAAGG
*
9293517 TTTAGGGTTTT-ATTTTAGGGTTTGAAGG
1 TTTAGGATTTTGATTTTA-GGTTTGAAGG
* *
9293545 ATTTAGGGTTTTGTTTTT
1 -TTTAGGATTTTGATTTT
9293563 GTAATTGAAA
Statistics
Matches: 305, Mismatches: 35, Indels: 97
0.70 0.08 0.22
Matches are distributed among these distances:
21 16 0.05
22 3 0.01
24 1 0.00
26 3 0.01
27 8 0.03
28 33 0.11
29 150 0.49
30 77 0.25
31 12 0.04
32 2 0.01
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.48
Consensus pattern (28 bp):
TTTAGGATTTTGATTTTAGGTTTGAAGG
Found at i:9293257 original size:21 final size:21
Alignment explanation
Indices: 9293233--9293277 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
9293223 GTTTGGAGGA
*
9293233 TTTAGGATTTTGATTTTAGGG
1 TTTAGGATTTTGATTTTAAGG
*
9293254 TTTAGGGTTTTGATTTTAAGG
1 TTTAGGATTTTGATTTTAAGG
9293275 TTT
1 TTT
9293278 GAAAGTTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.27, T:0.56
Consensus pattern (21 bp):
TTTAGGATTTTGATTTTAAGG
Found at i:9293373 original size:30 final size:29
Alignment explanation
Indices: 9293252--9293561 Score: 197
Period size: 29 Copynumber: 10.6 Consensus size: 29
9293242 TTGATTTTAG
* *
9293252 GGTTTAGGGTTTTGATTTTAAGGTTTGAAA
1 GGTTTAGGGTTTCG-TTTTAGGGTTTGAAA
* * *
9293282 -GTTT-GGAGTTTTGATTTTAGAGTTT-AGA
1 GGTTTAGG-GTTTCG-TTTTAGGGTTTGAAA
* ** *
9293310 GGATTTAAGGTTTAATTTTA-GGTTTGAGA
1 GG-TTTAGGGTTTCGTTTTAGGGTTTGAAA
*
9293339 -GTTTAGGGTTTCGTTCTTATGGTTT-ATAA
1 GGTTTAGGGTTTCGTT-TTAGGGTTTGA-AA
* * ** *
9293368 GGTTTAGGGTTTCATTTCATAGTTTGAAG
1 GGTTTAGGGTTTCGTTTTAGGGTTTGAAA
*
9293397 GGTTTAGGGTTTTGTTTTTAGGGTTTGAAA
1 GGTTTAGGGTTTCG-TTTTAGGGTTTGAAA
* *
9293427 GGTTTAGGATTTTGTGTTTAGGGTTTGAAA
1 GGTTTAGGGTTTCGT-TTTAGGGTTTGAAA
* ** *
9293457 GGTTTAGGGATTAATTTTAGAGTTT-AAA
1 GGTTTAGGGTTTCGTTTTAGGGTTTGAAA
* * * *
9293485 GGGTTTAGAGATTT-ATTTTAGGGTTTGGAG
1 -GGTTTAG-GGTTTCGTTTTAGGGTTTGAAA
**
9293515 GGTTTAGGGTTTTATTTTAGGGTTTG-AA
1 GGTTTAGGGTTTCGTTTTAGGGTTTGAAA
*
9293543 GGATTTAGGGTTTTGTTTT
1 GG-TTTAGGGTTTCGTTTT
9293562 TGTAATTGAA
Statistics
Matches: 228, Mismatches: 35, Indels: 35
0.77 0.12 0.12
Matches are distributed among these distances:
27 11 0.05
28 23 0.10
29 118 0.52
30 75 0.33
31 1 0.00
ACGTcount: A:0.21, C:0.01, G:0.30, T:0.48
Consensus pattern (29 bp):
GGTTTAGGGTTTCGTTTTAGGGTTTGAAA
Found at i:9293434 original size:16 final size:16
Alignment explanation
Indices: 9293413--9293465 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
9293403 GGGTTTTGTT
9293413 TTTAGGGTTTGAAAGG
1 TTTAGGGTTTGAAAGG
* *
9293429 TTTAGGATTTTG---TG
1 TTTAGG-GTTTGAAAGG
9293443 TTTAGGGTTTGAAAGG
1 TTTAGGGTTTGAAAGG
9293459 TTTAGGG
1 TTTAGGG
9293466 ATTAATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
13 4 0.14
14 7 0.24
16 14 0.48
17 4 0.14
ACGTcount: A:0.21, C:0.00, G:0.36, T:0.43
Consensus pattern (16 bp):
TTTAGGGTTTGAAAGG
Found at i:9293522 original size:16 final size:16
Alignment explanation
Indices: 9293501--9293555 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
9293491 AGAGATTTAT
* *
9293501 TTTAGGGTTTGGAGGG
1 TTTAGGGTTTGAAGGA
* *
9293517 TTTAGGGTTT-TA--T
1 TTTAGGGTTTGAAGGA
9293530 TTTAGGGTTTGAAGGA
1 TTTAGGGTTTGAAGGA
9293546 TTTAGGGTTT
1 TTTAGGGTTT
9293556 TGTTTTTGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
13 10 0.31
14 1 0.03
15 1 0.03
16 20 0.62
ACGTcount: A:0.16, C:0.00, G:0.36, T:0.47
Consensus pattern (16 bp):
TTTAGGGTTTGAAGGA
Found at i:9294002 original size:15 final size:15
Alignment explanation
Indices: 9293953--9294010 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
9293943 TAAATATTTT
* *
9293953 TTAAAAAACTCAAAA
1 TTAAAAAAATAAAAA
9293968 -TAACAAAAATAATAATA
1 TTAA-AAAAATAA-AA-A
*
9293985 TTAAAAAATTAAAAA
1 TTAAAAAAATAAAAA
9294000 TTAAAAAAATA
1 TTAAAAAAATA
9294011 CCTGAACCGG
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 3 0.09
15 17 0.49
16 4 0.11
17 8 0.23
18 3 0.09
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (15 bp):
TTAAAAAAATAAAAA
Found at i:9295197 original size:18 final size:18
Alignment explanation
Indices: 9295174--9295210 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
9295164 GTCAAAACAG
*
9295174 TCCAAAATGTTTAGAATA
1 TCCAAAATATTTAGAATA
9295192 TCCAAAATATTTAGAATA
1 TCCAAAATATTTAGAATA
9295210 T
1 T
9295211 AAAGTAGTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.11, G:0.08, T:0.35
Consensus pattern (18 bp):
TCCAAAATATTTAGAATA
Found at i:9296050 original size:22 final size:22
Alignment explanation
Indices: 9295973--9296052 Score: 74
Period size: 22 Copynumber: 3.7 Consensus size: 22
9295963 GATCTTATAA
* *
9295973 ATTATGCTC-AAGGTCTTAAAA
1 ATTATGCTCGAAGGTCTTAGAG
* * **
9295994 ATTATGCCCAAATATCTTAGAG
1 ATTATGCTCGAAGGTCTTAGAG
*
9296016 ATTATGCTTGAAGGTCTTAGAG
1 ATTATGCTCGAAGGTCTTAGAG
9296038 ATTATG-TCCGAAGGT
1 ATTATGCT-CGAAGGT
9296053 TTTATGAATC
Statistics
Matches: 46, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
21 9 0.20
22 37 0.80
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.34
Consensus pattern (22 bp):
ATTATGCTCGAAGGTCTTAGAG
Found at i:9296168 original size:101 final size:103
Alignment explanation
Indices: 9296027--9296248 Score: 270
Period size: 101 Copynumber: 2.2 Consensus size: 103
9296017 TTATGCTTGA
* * *
9296027 AGGTCTTAGAGATTATGTCCGAAGGTTTTATGAATCTTAAAATATTTAAATGCTCATCGTAG-AA
1 AGGTCTTAGAGATTATGTCCGAAAGTCTTACGAATCTTAAAATATTTAAATGCTCATCGTAGAAA
* * *
9296091 GGTATTGAAAC-TTAAAAATTTAAAATGTTTTACCCTG
66 GGCATTAAAACTTTAAAAATTCAAAATGTTTTACCCTG
* * *
9296128 AGGTTTTAGAGATTATG-CCTGAAAGTCTTACGAATCTTAAAATCTTTAAATGCTCATTGTAGAA
1 AGGTCTTAGAGATTATGTCC-GAAAGTCTTACGAATCTTAAAATATTTAAATGCTCATCGTAG-A
* ** **
9296192 AAGGCATTAAAACTTTAAAAATTCAGAATGTTTTGTCAGG
64 AAGGCATTAAAACTTTAAAAATTCAAAATGTTTTACCCTG
*
9296232 AGGTCTTAGTGATTATG
1 AGGTCTTAGAGATTATG
9296249 CTTGGAAGAC
Statistics
Matches: 101, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
100 2 0.02
101 53 0.52
103 11 0.11
104 35 0.35
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (103 bp):
AGGTCTTAGAGATTATGTCCGAAAGTCTTACGAATCTTAAAATATTTAAATGCTCATCGTAGAAA
GGCATTAAAACTTTAAAAATTCAAAATGTTTTACCCTG
Found at i:9296306 original size:126 final size:126
Alignment explanation
Indices: 9296139--9296628 Score: 447
Period size: 126 Copynumber: 3.9 Consensus size: 126
9296129 GGTTTTAGAG
*
9296139 ATTATGCCTGAAAGTCTTACGAATCTTAAAATCTTTAAATGCTCATTGTAGAAAAGGCATTAAAA
1 ATTATTCCTGAAAGTCTTACGAATCTTAAAATCTTTAAATGCTCATTGTAGAAAAGGCATTAAAA
* * * * * * *
9296204 CTTTAAAAATTCAGAATGTTTTGTC-AGGAGGTCTTAGTGATTATGCTTGGAAGACTTACAA
66 CTTTAAAAATTCAAAATGTTTTGCCTA-GAAGTCTTAGAGATTATGCCTGAAAGACTAACAA
* * * *
9296265 ATTATTCCTGAAGGTCTTATGACTCTTAAAATCTTTGAATGCTCATTGTAGAAAAGGCATTAAAA
1 ATTATTCCTGAAAGTCTTACGAATCTTAAAATCTTTAAATGCTCATTGTAGAAAAGGCATTAAAA
* * *
9296330 CTTTAAAAATTTAAAATGTTTTGCCTAGAAGTCTTAGAGATTATGCCTGAAAGACTAAGAG
66 CTTTAAAAATTCAAAATGTTTTGCCTAGAAGTCTTAGAGATTATGCCTGAAAGACTAACAA
* * * * ** *
9296391 ATTA-TGCTCGAAAGTCTTACGAATATCAAAATCTTTAAATGCTCATCGTTA-AAAAGGTGTTGA
1 ATTATTCCT-GAAAGTCTTACGAATCTTAAAATCTTTAAATGCTCATTG-TAGAAAAGGCATTAA
* * * * * * * * * * * *
9296454 AACTTTAAAAATTTAAAATTTTTTACAT-GAAGATTTTAGAGATTATGTCTGGAGGATTTAGAG
64 AACTTTAAAAATTCAAAATGTTTTGCCTAGAAG-TCTTAGAGATTATGCCTGAAAGACTAACAA
* * * * * * *
9296517 ATTA--CACTTAGAGGTCTTACAAATCTTAAAATCTTTGAATGC-CTATCGTAGAAAAGGCGTTG
1 ATTATTC-CTGA-AAGTCTTACGAATCTTAAAATCTTTAAATGCTC-ATTGTAGAAAAGGCATTA
* * * *
9296579 AAATTTTAAAAATTTAAAATATTTTACCCT-GAAGTCTTAGAGATTATGCC
63 AAACTTTAAAAATTCAAAATGTTTT-GCCTAGAAGTCTTAGAGATTATGCC
9296629 CAAAGGTTTT
Statistics
Matches: 306, Mismatches: 49, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
125 11 0.04
126 286 0.93
127 9 0.03
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (126 bp):
ATTATTCCTGAAAGTCTTACGAATCTTAAAATCTTTAAATGCTCATTGTAGAAAAGGCATTAAAA
CTTTAAAAATTCAAAATGTTTTGCCTAGAAGTCTTAGAGATTATGCCTGAAAGACTAACAA
Found at i:9296459 original size:252 final size:252
Alignment explanation
Indices: 9296135--9296628 Score: 610
Period size: 252 Copynumber: 2.0 Consensus size: 252
9296125 CTGAGGTTTT
* * *
9296135 AGAGATTATGCCTGAAAGTCTTACGAATCTTAAAATCTTTAAATGCTCATTGTAGAAAAGGCATT
1 AGAGATTATGCCTGAAAGTCTTACGAATATCAAAATCTTTAAATGCTCATCGTAGAAAAGGCATT
* * * *
9296200 AAAACTTTAAAAATTCAGAATGTTTTGT-CA-GGAGGTCTTAGTGATTATG-CTTGGAAGACTTA
66 AAAACTTTAAAAATTCAAAAT-TTTT-TACATGAAGATCTTAGAGATTATGTC-TGGAAGACTTA
** * *
9296262 CAAATTATTC-CTGA-AGGTCTTATGACTCTTAAAATCTTTGAATG-CTCATTGTAGAAAAGGCA
128 CAAATTA--CACTGAGAGGTCTTACAAATCTTAAAATCTTTGAATGCCT-ATCGTAGAAAAGGCA
* *
9296324 TTAAAACTTTAAAAATTTAAAATGTTTT-GCCTAGAAGTCTTAGAGATTATGCCTGAAAGACTA
190 TTAAAACTTTAAAAATTTAAAATATTTTACCCT-GAAGTCTTAGAGATTATGCCTGAAAGACTA
**
9296387 AGAGATTATG-CTCGAAAGTCTTACGAATATCAAAATCTTTAAATGCTCATCGTTA-AAAAGGTG
1 AGAGATTATGCCT-GAAAGTCTTACGAATATCAAAATCTTTAAATGCTCATCG-TAGAAAAGGCA
* * * * * *
9296450 TTGAAACTTTAAAAATTTAAAATTTTTTACATGAAGATTTTAGAGATTATGTCTGGAGGATTTAG
64 TTAAAACTTTAAAAATTCAAAATTTTTTACATGAAGATCTTAGAGATTATGTCTGGAAGACTTAC
* * * *
9296515 AGATTACACTTAGAGGTCTTACAAATCTTAAAATCTTTGAATGCCTATCGTAGAAAAGGCGTTGA
129 AAATTACACTGAGAGGTCTTACAAATCTTAAAATCTTTGAATGCCTATCGTAGAAAAGGCATTAA
*
9296580 AATTTTAAAAATTTAAAATATTTTACCCTGAAGTCTTAGAGATTATGCC
194 AACTTTAAAAATTTAAAATATTTTACCCTGAAGTCTTAGAGATTATGCC
9296629 CAAAGGTTTT
Statistics
Matches: 207, Mismatches: 26, Indels: 18
0.82 0.10 0.07
Matches are distributed among these distances:
250 2 0.01
251 11 0.05
252 186 0.90
253 8 0.04
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.35
Consensus pattern (252 bp):
AGAGATTATGCCTGAAAGTCTTACGAATATCAAAATCTTTAAATGCTCATCGTAGAAAAGGCATT
AAAACTTTAAAAATTCAAAATTTTTTACATGAAGATCTTAGAGATTATGTCTGGAAGACTTACAA
ATTACACTGAGAGGTCTTACAAATCTTAAAATCTTTGAATGCCTATCGTAGAAAAGGCATTAAAA
CTTTAAAAATTTAAAATATTTTACCCTGAAGTCTTAGAGATTATGCCTGAAAGACTA
Found at i:9298665 original size:13 final size:13
Alignment explanation
Indices: 9298642--9298666 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9298632 CTTTATTGCT
9298642 TTATTTTATTTTA
1 TTATTTTATTTTA
9298655 TTATTTTATTTT
1 TTATTTTATTTT
9298667 TTTGAAACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:9302142 original size:536 final size:529
Alignment explanation
Indices: 9300558--9302143 Score: 1899
Period size: 536 Copynumber: 3.0 Consensus size: 529
9300548 CTTTGTCATT
* * * *
9300558 TTTTTTATTGGTCGAGTGGTAGGCTCAAGTGTAGGAACAAGATCGTGAATGGTTATTTAAGGATT
1 TTTTTTATTGGTTGGGTGGTAGGCTCAAGTGTAGGAATAAGATTGTGAATGGTTA--TAAGGA-T
* * *
9300623 AGGATTTACTAAAAAACCCAAATGCTAGCTTAGTTGACAAATATATGTGCTTTAAGAGATACTAC
63 -GGATTTGCTGAAAAACCCAAATGCTAGCTTAGTTGACAAATATATGGGCTTTAAGAGATACTAC
* * * *
9300688 CTATAACT-AGGAAGTGGGGTTGATGAAAA-AATAAGAATTGCATGGGATGAAGTTTTTGGGTAA
127 CTATAA-TAAGAAAGTGGGGTTGATGAAAAGGATAAGAATTGCATGGGATGAAGTTATTGGGTAG
* * * *
9300751 ATGCCCCTCAAGTGTGACT-ATTTACATCTCTTTTTCATTCTTTTTCGATGTCTTTTCCTTTTCA
191 ATGCCCTTCAAGTGTGACTGA-TTGCATCTCCTTTTCATTCTTTTTCGATGTATTTTCCTTTTCA
* * * * *
9300815 ACATCAGTTGTATCTTTCAATCTAATCCTGCCATTCTTGATTATATTTTTTATCATTTTAC-TAG
255 ACATTAGTTGCATCTTTCAACCTAATCCTGCCATTCTTGATTATATTTTCTATCATTTT-CTTGG
* * *
9300879 CAATCACCATTTCAATAAAATTTTT-AAAGATA-TTTGAATCATCCTTTCGTAATAGGGAATGTG
319 CAATCACCATTTTAACAAAATTTTTGAAAGATATTTTGAATCAT-CTTTTGTAATA-GGAATGT-
* * *
9300942 T-AAGGAATTGACAAACAAAACAGTAATTTTTTTTTGACAAAGGTGGTTGAACTTGGGTTGCCAT
381 TCAAGGAATTGACAAATAAAACAGTAATTTTTTTTTGACAAA-GTGGTTGAACCTGGGTTGTCAT
* * * * *
9301006 ATC-CT-TCATCTGTGTGCATATTCATTGAAAATTTCAGTTACCTTTTCTCCATGTTTCGTAAGG
445 ATCTCTCT-ATTTGTGTGCATATTCTTTGAAAATTTTAGTTACTTTTTCTTCATGTTT-GTAAGG
9301069 ACAATTTATTTTTCTTTTTTGA
508 ACAATTTATTTTTCTTTTTTGA
* * * * * * * *
9301091 -TTTTTGTTGGTTTGGTGGTAAGCTCAAATGTAAGAATAAGATTGTGGATAGTTATAAGGAAAGG
1 TTTTTTATTGGTTGGGTGGTAGGCTCAAGTGTAGGAATAAGATTGTGAATGGTTATAAGG--ATG
* *
9301155 GATTTGCTGAAAAACCCAAATGCTGGCTTAGTTGACAAATATATGGGCTTTAAGAAATACTACCT
64 GATTTGCTGAAAAACCCAAATGCTAGCTTAGTTGACAAATATATGGGCTTTAAGAGATACTACCT
* * * *
9301220 ATAACAA-AGAAGTGGGGTTGATAAAAAGGATAAGAATTGCATGGGATAAAGTTCTTGGGTAGAT
129 ATAATAAGA-AAGTGGGGTTGATGAAAAGGATAAGAATTGCATGGGATGAAGTTATTGGGTAGAT
*** * * * * * *
9301284 GTTTTTCAAGTGTAATTGCTTGTATCTCCTTTTTATTCTTTTTCAATGTA-TTTCCTTTTCAACA
193 GCCCTTCAAGTGTGACTGATTGCATCTCCTTTTCATTCTTTTTCGATGTATTTTCCTTTTCAACA
* * * *
9301348 TTAGTTACATCTTGCAACCTAATCTTGCCATTCTTAATTATATTTTCTATCATTTTCTTGGCAAT
258 TTAGTTGCATCTTTCAACCTAATCCTGCCATTCTTGATTATATTTTCTATCATTTTCTTGGCAAT
* ** * *
9301413 CATCATTTTAACAAAATTTTTG-AAGATATTTCAAATAATCTTTTCGTAATAGAGAATGTTCAAA
323 CACCATTTTAACAAAATTTTTGAAAGATATTTTGAATCATCTTTT-GTAATAG-GAATGTTCAAG
* *
9301477 GAATTGACAAATATAACAGTAATTTTCTTTTCTGATAGAAGTGGTTGAACCTGGGTTGTCATATC
386 GAATTGACAAATAAAACAGTAATTTT-TTTT-TGACA-AAGTGGTTGAACCTGGGTTGTCATATC
*
9301542 TCTCCATTTGTGTGCATATTCTTTGAAAATTTTAGTTACCTTTTTCTTCATGTTTTGTAAGGACA
448 TCTCTATTTGTGTGCATATTCTTTGAAAATTTTAGTTA-CTTTTTCTTCATG-TTTGTAAGGACA
9301607 ATTTATTTTTCGTTTTTT-A
511 ATTTATTTTTC-TTTTTTGA
* *
9301626 TTTTTTATTAGTTGGGTGATAGGCTCAAGTGTAGGAATAAGATTGTGAATGGTTATAAGGATGGA
1 TTTTTTATTGGTTGGGTGGTAGGCTCAAGTGTAGGAATAAGATTGTGAATGGTTATAAGGATGG-
* *
9301691 AATTTGCTGAAGAACCCAAATGCTAGCTTGGTTGACAAATATATGGGCTTTAAGAGATACTAACC
65 -ATTTGCTGAAAAACCCAAATGCTAGCTTAGTTGACAAATATATGGGCTTTAAGAGATACT-ACC
* * *
9301756 -ATAATAAGAAAGTAAGGGTTGATGAAAAGGATAAGAATTGCATGGTACGAAGTTATTGGGTAGA
128 TATAATAAGAAAGT-GGGGTTGATGAAAAGGATAAGAATTGCATGGGATGAAGTTATTGGGTAGA
* * *
9301820 TGCCCTTCAAGTGTGACTGATTGCATTTCCTTTTCATTCTTTTTTGATGTATTTTTCTTTTCAAC
192 TGCCCTTCAAGTGTGACTGATTGCATCTCCTTTTCATTCTTTTTCGATGTATTTTCCTTTTCAAC
* * * *
9301885 ATTAGTTGCATCTTTCAGCCTAATCCTACTATTCTTGATTGTATTTTCTATCATTTTCTTGGCAA
257 ATTAGTTGCATCTTTCAACCTAATCCTGCCATTCTTGATTATATTTTCTATCATTTTCTTGGCAA
* *
9301950 TCACCATTTTAACAAAATTTTTGAAAAATATTTTGAATCATCATTTTGTAATAGGAGTGTTCAAG
322 TCACCATTTTAACAAAATTTTTGAAAGATATTTTGAATCATC-TTTTGTAATAGGAATGTTCAAG
* * * * * * *
9302015 GAATTAAAAAATAGAACAATAATTTTTTTTGGACAAAGATGGTTAAACCAT-GGTTGTCATGTCT
386 GAATTGACAAATAAAACAGTAATTTTTTTTTGACAAAG-TGGTTGAACC-TGGGTTGTCATATCT
* * ** * * *
9302079 CTCTATTTGTATACATATTCTTTGGCAATTTTAGTTGTCTTTTTCTTTATGTTCTGCAAGGACAA
449 CTCTATTTGTGTGCATATTCTTTGAAAATTTTAGTT-ACTTTTTCTTCATGTT-TGTAAGGACAA
9302144 CCTATTTGGT
Statistics
Matches: 891, Mismatches: 129, Indels: 63
0.82 0.12 0.06
Matches are distributed among these distances:
529 1 0.00
530 186 0.21
531 113 0.13
532 48 0.05
533 27 0.03
534 37 0.04
535 37 0.04
536 202 0.23
537 93 0.10
538 122 0.14
539 21 0.02
540 4 0.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (529 bp):
TTTTTTATTGGTTGGGTGGTAGGCTCAAGTGTAGGAATAAGATTGTGAATGGTTATAAGGATGGA
TTTGCTGAAAAACCCAAATGCTAGCTTAGTTGACAAATATATGGGCTTTAAGAGATACTACCTAT
AATAAGAAAGTGGGGTTGATGAAAAGGATAAGAATTGCATGGGATGAAGTTATTGGGTAGATGCC
CTTCAAGTGTGACTGATTGCATCTCCTTTTCATTCTTTTTCGATGTATTTTCCTTTTCAACATTA
GTTGCATCTTTCAACCTAATCCTGCCATTCTTGATTATATTTTCTATCATTTTCTTGGCAATCAC
CATTTTAACAAAATTTTTGAAAGATATTTTGAATCATCTTTTGTAATAGGAATGTTCAAGGAATT
GACAAATAAAACAGTAATTTTTTTTTGACAAAGTGGTTGAACCTGGGTTGTCATATCTCTCTATT
TGTGTGCATATTCTTTGAAAATTTTAGTTACTTTTTCTTCATGTTTGTAAGGACAATTTATTTTT
CTTTTTTGA
Found at i:9305126 original size:37 final size:35
Alignment explanation
Indices: 9305085--9305165 Score: 99
Period size: 35 Copynumber: 2.2 Consensus size: 35
9305075 AGCATTTTTC
*
9305085 ATTTATTAATATGTGCATGAAATAGAATGTATGTACT
1 ATTTATTAATATG-G-ATGAAATAGAATGCATGTACT
* * *
9305122 ATTTATTAATATGGATGAGATGGAATGCATGTATT
1 ATTTATTAATATGGATGAAATAGAATGCATGTACT
9305157 ATGTTATTA
1 AT-TTATTA
9305166 TGATGTGTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
35 19 0.49
36 7 0.18
37 13 0.33
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.42
Consensus pattern (35 bp):
ATTTATTAATATGGATGAAATAGAATGCATGTACT
Found at i:9306514 original size:21 final size:21
Alignment explanation
Indices: 9306488--9306533 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
9306478 TATCATTTAC
*
9306488 TTTTGGTATTTAAAAACTTAA
1 TTTTGGTATTTAAAAAATTAA
9306509 TTTTGGTATTTAAAAAATTAA
1 TTTTGGTATTTAAAAAATTAA
9306530 TTTT
1 TTTT
9306534 CTCAATTTCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.52
Consensus pattern (21 bp):
TTTTGGTATTTAAAAAATTAA
Found at i:9310985 original size:31 final size:31
Alignment explanation
Indices: 9310925--9310986 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
9310915 ATCAATAAAT
**
9310925 GGTTAATTTAATGATATTGAATTTGGTTTTA
1 GGTTAATTTAATGATATTGAATTCAGTTTTA
*
9310956 GGTTAATTTAATGATGTT-AGATTCAGTTTTA
1 GGTTAATTTAATGATATTGA-ATTCAGTTTTA
9310987 AGCTAAAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 1 0.04
31 26 0.96
ACGTcount: A:0.29, C:0.02, G:0.19, T:0.50
Consensus pattern (31 bp):
GGTTAATTTAATGATATTGAATTCAGTTTTA
Found at i:9313664 original size:11 final size:11
Alignment explanation
Indices: 9313643--9313686 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
9313633 ACAAATTTCA
9313643 TCAATATTCTAT
1 TCAA-ATTCTAT
9313655 TCAAATTCTAT
1 TCAAATTCTAT
* *
9313666 CCATATTCTAT
1 TCAAATTCTAT
9313677 TCAAATTCTA
1 TCAAATTCTA
9313687 ATGGTGTACT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
11 24 0.86
12 4 0.14
ACGTcount: A:0.34, C:0.20, G:0.00, T:0.45
Consensus pattern (11 bp):
TCAAATTCTAT
Done.