Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 48 of 77
Found at i:9315231 original size:1 final size:1
Alignment explanation
Indices: 9315225--9315249 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
9315215 TAAAAGAGGA
9315225 CCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCC
9315250 AGGGTAAACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:9318605 original size:13 final size:14
Alignment explanation
Indices: 9318587--9318616 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
9318577 TAAAGGGTTT
9318587 TGAAGCAG-GAAGA
1 TGAAGCAGAGAAGA
9318600 TGAAGCAGAGAAGA
1 TGAAGCAGAGAAGA
9318614 TGA
1 TGA
9318617 TTGTGCCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.47, C:0.07, G:0.37, T:0.10
Consensus pattern (14 bp):
TGAAGCAGAGAAGA
Found at i:9323024 original size:51 final size:51
Alignment explanation
Indices: 9322913--9323011 Score: 128
Period size: 51 Copynumber: 1.9 Consensus size: 51
9322903 CAATAATATG
* * * *
9322913 ATATAAATATAATATAAAAATAATATGATTTAAAATTTTAATATTAATTAT
1 ATATGAATTTAATATAAAAAAAATATGATTTAAAATTTTAATATCAATTAT
* *
9322964 ATATGAATTTAATATAATAAAAAATAT-ATTTTAAATTTTTATATCAAT
1 ATATGAATTTAATATAA-AAAAAATATGATTTAAAATTTTAATATCAAT
9323012 ATAATTTTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 33 0.80
52 8 0.20
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.44
Consensus pattern (51 bp):
ATATGAATTTAATATAAAAAAAATATGATTTAAAATTTTAATATCAATTAT
Found at i:9323543 original size:16 final size:18
Alignment explanation
Indices: 9323503--9323543 Score: 54
Period size: 16 Copynumber: 2.5 Consensus size: 18
9323493 ATTTTAAAAG
9323503 ATAATATTTAATAATTTT
1 ATAATATTTAATAATTTT
9323521 A-AA-ATTT-A-AATTTT
1 ATAATATTTAATAATTTT
9323535 ATAATATTT
1 ATAATATTT
9323544 TCTTTTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
14 7 0.33
15 3 0.14
16 8 0.38
17 2 0.10
18 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATAATATTTAATAATTTT
Found at i:9324056 original size:29 final size:27
Alignment explanation
Indices: 9324007--9324068 Score: 63
Period size: 27 Copynumber: 2.2 Consensus size: 27
9323997 AATTACATAT
*
9324007 TATAAATTTTATTGATATAAAAATATAAA
1 TATAATTTTTATTGATAT--AAATATAAA
* *
9324036 TATAATTTTTATT-TTATTAAATTTAAA
1 TATAATTTTTATTGATA-TAAATATAAA
9324063 TATAAT
1 TATAAT
9324069 AATTATTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 14 0.48
28 2 0.07
29 13 0.45
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (27 bp):
TATAATTTTTATTGATATAAATATAAA
Found at i:9324812 original size:44 final size:44
Alignment explanation
Indices: 9324749--9324840 Score: 141
Period size: 44 Copynumber: 2.1 Consensus size: 44
9324739 ATCTTCTTGC
* * *
9324749 TGGGATAATATTTGCTGATCTTTTCTTCATTAGTAACATCAAAA
1 TGGGATAATAGTTGCTGATCTTTTCCTCAATAGTAACATCAAAA
9324793 TGGGATAAT-GTTGACTGATCTTTTCCTCAATAGTAACATCAAAA
1 TGGGATAATAGTTG-CTGATCTTTTCCTCAATAGTAACATCAAAA
9324837 TGGG
1 TGGG
9324841 GACAATTTCT
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 3 0.07
44 41 0.93
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (44 bp):
TGGGATAATAGTTGCTGATCTTTTCCTCAATAGTAACATCAAAA
Found at i:9340795 original size:2 final size:2
Alignment explanation
Indices: 9340788--9340817 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
9340778 ACAAGAATTA
*
9340788 AT AT AT AT AG AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9340818 TGTAATGCCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
AT
Found at i:9341436 original size:15 final size:15
Alignment explanation
Indices: 9341416--9341448 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
9341406 TGATCACAAG
9341416 ACAGTGATATTTTAA
1 ACAGTGATATTTTAA
9341431 ACAGTGATATTTTAA
1 ACAGTGATATTTTAA
9341446 ACA
1 ACA
9341449 TTGCTGACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.09, G:0.12, T:0.36
Consensus pattern (15 bp):
ACAGTGATATTTTAA
Found at i:9346969 original size:2 final size:2
Alignment explanation
Indices: 9346962--9346993 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
9346952 CATCTTTTAC
9346962 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9346994 CTCAGATCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9347193 original size:11 final size:13
Alignment explanation
Indices: 9347146--9347186 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
9347136 TATTTGATTT
*
9347146 ATATCAAATTTGA
1 ATATTAAATTTGA
* *
9347159 ATATTAAATGTGT
1 ATATTAAATTTGA
9347172 ATATTAAATTTGA
1 ATATTAAATTTGA
9347185 AT
1 AT
9347187 TAAATTTCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (13 bp):
ATATTAAATTTGA
Found at i:9347274 original size:19 final size:20
Alignment explanation
Indices: 9347237--9347280 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
9347227 TCGAATCGAA
*
9347237 TTATATATTTTTGTTAATTT
1 TTATATATTTTTGTAAATTT
9347257 TTATATATTTTT-TAAATTT
1 TTATATATTTTTGTAAATTT
9347276 TTATA
1 TTATA
9347281 AAATAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (20 bp):
TTATATATTTTTGTAAATTT
Found at i:9349186 original size:31 final size:31
Alignment explanation
Indices: 9349130--9349191 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
9349120 ATACACTATC
*
9349130 AATAAATCAGATGATAACAATTCATTAATGA
1 AATAAATCAGATGATAACAACTCATTAATGA
* * *
9349161 AATAAATCAGATGATGATACCTCATTAATGA
1 AATAAATCAGATGATAACAACTCATTAATGA
9349192 GTAAATTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.29
Consensus pattern (31 bp):
AATAAATCAGATGATAACAACTCATTAATGA
Found at i:9349988 original size:26 final size:26
Alignment explanation
Indices: 9349959--9350011 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
9349949 ATATTACGAA
*
9349959 TTGTTCCTAAATTATGGTAAAGTGTT
1 TTGTTCCTAAATTATAGTAAAGTGTT
* *
9349985 TTGTTCCTTAATTATAGTAATGTGTT
1 TTGTTCCTAAATTATAGTAAAGTGTT
9350011 T
1 T
9350012 GATATAATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.08, G:0.17, T:0.51
Consensus pattern (26 bp):
TTGTTCCTAAATTATAGTAAAGTGTT
Found at i:9353820 original size:35 final size:34
Alignment explanation
Indices: 9353781--9353846 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
9353771 ATTTGAGTAC
9353781 AAATTAAAAATTAA-AAATTTATTTGAAAATTTAAA
1 AAATT-AAAA-TAATAAATTTATTTGAAAATTTAAA
* *
9353816 AAATTAAAATAATAAATTTTTTTTAAAATTT
1 AAATTAAAATAATAAATTTATTTGAAAATTT
9353847 TACAATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 3 0.11
34 20 0.71
35 5 0.18
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (34 bp):
AAATTAAAATAATAAATTTATTTGAAAATTTAAA
Found at i:9354780 original size:22 final size:21
Alignment explanation
Indices: 9354755--9354810 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
9354745 GAATGTGTTT
9354755 GATATATAATAAGATAAAATAA
1 GATATATAATAA-ATAAAATAA
* *
9354777 GATAATATTATAAATAAAATTA
1 GAT-ATATAATAAATAAAATAA
*
9354799 GATTAAATAATA
1 GA-TATATAATA
9354811 TCATTTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
22 19 0.68
23 9 0.32
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (21 bp):
GATATATAATAAATAAAATAA
Found at i:9355274 original size:17 final size:17
Alignment explanation
Indices: 9355236--9355274 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
9355226 ATATATTTTA
9355236 GTAAAAAAAGTTCACAT
1 GTAAAAAAAGTTCACAT
* * *
9355253 TTAAAAAAAGTTTATAT
1 GTAAAAAAAGTTCACAT
9355270 GTAAA
1 GTAAA
9355275 TATTAATAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.31
Consensus pattern (17 bp):
GTAAAAAAAGTTCACAT
Found at i:9359177 original size:87 final size:86
Alignment explanation
Indices: 9359030--9359238 Score: 251
Period size: 87 Copynumber: 2.4 Consensus size: 86
9359020 TCTGGTTATC
* * * * *
9359030 TAGCCTCTGAATGGAGGAGCCCATTTCTTATTTTAAAGTTGTTTAGCCTCTAAATAGAGGAGCTC
1 TAGCCTTTGAATAGAGGAGCCCATTTCATATTTTAAAATTGTTTAGCCTCTAAATAGAGGAGCCC
9359095 ATTTCATATGTTT-AAGTTGTT
66 ATTTCATAT-TTTAAAGTTGTT
* * * *
9359116 TAGCCTTTGAATAGATGAGCCCATTCTCATATTTTAAAATTGTTTAGCCTTTGAATTGAGGAGCC
1 TAGCCTTTGAATAGAGGAGCCCATT-TCATATTTTAAAATTGTTTAGCCTCTAAATAGAGGAGCC
*
9359181 CATTTCATATTTTAAAGTTTTT
65 CATTTCATATTTTAAAGTTGTT
** * *
9359203 TAGCCTTTGTTTAGAGGAGTCAATTTC-TCATTTTAA
1 TAGCCTTTGAATAGAGGAGCCCATTTCAT-ATTTTAA
9359239 TTTTGGTTGC
Statistics
Matches: 105, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
85 1 0.01
86 34 0.32
87 70 0.67
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (86 bp):
TAGCCTTTGAATAGAGGAGCCCATTTCATATTTTAAAATTGTTTAGCCTCTAAATAGAGGAGCCC
ATTTCATATTTTAAAGTTGTT
Found at i:9359209 original size:43 final size:43
Alignment explanation
Indices: 9359030--9359238 Score: 251
Period size: 43 Copynumber: 4.8 Consensus size: 43
9359020 TCTGGTTATC
* * *
9359030 TAGCCTCTGAATGGAGGAGCCCATTTCTTATTTTAAAGTTGTT
1 TAGCCTTTGAATAGAGGAGCCCATTTCATATTTTAAAGTTGTT
* * *
9359073 TAGCCTCTAAATAGAGGAGCTCATTTCATATGTTT-AAGTTGTT
1 TAGCCTTTGAATAGAGGAGCCCATTTCATAT-TTTAAAGTTGTT
* *
9359116 TAGCCTTTGAATAGATGAGCCCATTCTCATATTTTAAAATTGTT
1 TAGCCTTTGAATAGAGGAGCCCATT-TCATATTTTAAAGTTGTT
* *
9359160 TAGCCTTTGAATTGAGGAGCCCATTTCATATTTTAAAGTTTTT
1 TAGCCTTTGAATAGAGGAGCCCATTTCATATTTTAAAGTTGTT
** * *
9359203 TAGCCTTTGTTTAGAGGAGTCAATTTC-TCATTTTAA
1 TAGCCTTTGAATAGAGGAGCCCATTTCAT-ATTTTAA
9359239 TTTTGGTTGC
Statistics
Matches: 144, Mismatches: 18, Indels: 8
0.85 0.11 0.05
Matches are distributed among these distances:
42 1 0.01
43 104 0.72
44 39 0.27
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (43 bp):
TAGCCTTTGAATAGAGGAGCCCATTTCATATTTTAAAGTTGTT
Found at i:9360032 original size:19 final size:19
Alignment explanation
Indices: 9359972--9360029 Score: 75
Period size: 19 Copynumber: 3.1 Consensus size: 19
9359962 AATAATAAAA
9359972 AATAAATAAATAACCATGC
1 AATAAATAAATAACCATGC
*
9359991 AATAAATATAA-AATCATGC
1 AATAAATA-AATAACCATGC
*
9360010 AAT-AATAAATAACCGTGC
1 AATAAATAAATAACCATGC
9360028 AA
1 AA
9360030 ATATTAATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 2 0.06
18 12 0.35
19 18 0.53
20 2 0.06
ACGTcount: A:0.57, C:0.14, G:0.07, T:0.22
Consensus pattern (19 bp):
AATAAATAAATAACCATGC
Found at i:9360054 original size:37 final size:36
Alignment explanation
Indices: 9359975--9360083 Score: 95
Period size: 37 Copynumber: 3.1 Consensus size: 36
9359965 AATAAAAAAT
*
9359975 AAATAAATAACCATGCAATAAATATAAAATCATGCA
1 AAATAAATAACCATGCAATAAATATAAAATCATACA
*
9360011 ATAATAAATAACCGTGCAAATATTAATAT-AAATCATAC-
1 A-AATAAATAACCATGC-AATA--AATATAAAATCATACA
* *
9360049 AAAT--A-AA-CATGCAATTAAATATATAATAATACA
1 AAATAAATAACCATGCAA-TAAATATAAAATCATACA
9360082 AA
1 AA
9360084 TAATAATATA
Statistics
Matches: 61, Mismatches: 5, Indels: 17
0.73 0.06 0.20
Matches are distributed among these distances:
31 5 0.08
32 9 0.15
33 8 0.13
34 2 0.03
35 1 0.02
36 1 0.02
37 17 0.28
38 5 0.08
39 8 0.13
40 5 0.08
ACGTcount: A:0.58, C:0.12, G:0.05, T:0.26
Consensus pattern (36 bp):
AAATAAATAACCATGCAATAAATATAAAATCATACA
Found at i:9360055 original size:53 final size:53
Alignment explanation
Indices: 9360005--9360132 Score: 134
Period size: 53 Copynumber: 2.5 Consensus size: 53
9359995 AATATAAAAT
** * *
9360005 CATGCAA-T-AATAAATAACCGTGCAAATATTAATATAAATCATACAAATAAA
1 CATGCAATTAAATAAATAACAATACAAATAATAATATAAATCATACAAATAAA
* * ** *
9360056 CATGCAATTAAATATATAATAATACAAATAATAATATAAATCATGTAAATAGA
1 CATGCAATTAAATAAATAACAATACAAATAATAATATAAATCATACAAATAAA
* * *
9360109 TATGCAATTAAATATATAATAATA
1 CATGCAATTAAATAAATAACAATA
9360133 ATCATGCAAT
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 7 0.11
52 1 0.02
53 57 0.88
ACGTcount: A:0.55, C:0.09, G:0.05, T:0.30
Consensus pattern (53 bp):
CATGCAATTAAATAAATAACAATACAAATAATAATATAAATCATACAAATAAA
Found at i:9360179 original size:20 final size:20
Alignment explanation
Indices: 9360154--9360244 Score: 83
Period size: 20 Copynumber: 4.5 Consensus size: 20
9360144 ACACAAATAA
*
9360154 ATAAATTGATAATCATGCAG
1 ATAAATTAATAATCATGCAG
*
9360174 ATAAATTAATAATCATGCAA
1 ATAAATTAATAATCATGCAG
* * * *
9360194 ACATATTAATAGTCATGCAA
1 ATAAATTAATAATCATGCAG
* * *
9360214 ATATATTAATAAATCATACAA
1 ATAAATTAAT-AATCATGCAG
*
9360235 ATATATTAAT
1 ATAAATTAAT
9360245 CATGTAAATA
Statistics
Matches: 62, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
20 44 0.71
21 18 0.29
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.33
Consensus pattern (20 bp):
ATAAATTAATAATCATGCAG
Found at i:9360210 original size:40 final size:41
Alignment explanation
Indices: 9360166--9360244 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
9360156 AAATTGATAA
* *
9360166 TCATGCAGATAAATTAAT-AATCATGCAAACATATTAATAG
1 TCATGCAAATAAATTAATAAATCATACAAACATATTAATAG
* *
9360206 TCATGCAAATATATTAATAAATCATACAAATATATTAAT
1 TCATGCAAATAAATTAATAAATCATACAAACATATTAAT
9360245 CATGTAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
40 16 0.47
41 18 0.53
ACGTcount: A:0.49, C:0.11, G:0.06, T:0.33
Consensus pattern (41 bp):
TCATGCAAATAAATTAATAAATCATACAAACATATTAATAG
Found at i:9360286 original size:32 final size:33
Alignment explanation
Indices: 9360232--9360295 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 33
9360222 ATAAATCATA
* ** *
9360232 CAAATATATTAATCATGTAAATAAAATTTTAGG
1 CAAATATAATAATCATACAAATAAAATATTAGG
*
9360265 CAAATA-AATAATCATACAAATATAATATTAG
1 CAAATATAATAATCATACAAATAAAATATTAG
9360296 TCATGCAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
32 20 0.77
33 6 0.23
ACGTcount: A:0.53, C:0.08, G:0.06, T:0.33
Consensus pattern (33 bp):
CAAATATAATAATCATACAAATAAAATATTAGG
Found at i:9364382 original size:21 final size:23
Alignment explanation
Indices: 9364336--9364388 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 23
9364326 CGGGGCCCGA
*
9364336 ATCAATT-GGGCCTGGGTACCCGG
1 ATCAATTGGGGCCT-GGTACCCAG
9364359 ATCAATTGGGGCCT-G-ACCCAG
1 ATCAATTGGGGCCTGGTACCCAG
*
9364380 ATCATTTGG
1 ATCAATTGG
9364389 CCTGGCCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 13 0.48
22 1 0.04
23 7 0.26
24 6 0.22
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (23 bp):
ATCAATTGGGGCCTGGTACCCAG
Found at i:9364582 original size:17 final size:16
Alignment explanation
Indices: 9364556--9364589 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
9364546 ATATAGTATA
9364556 TATTATTATTATTATT
1 TATTATTATTATTATT
9364572 TATTAATTATTATTATT
1 TATT-ATTATTATTATT
9364589 T
1 T
9364590 TTGTAAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTATTATTATTATT
Found at i:9365125 original size:32 final size:31
Alignment explanation
Indices: 9365060--9365133 Score: 105
Period size: 31 Copynumber: 2.4 Consensus size: 31
9365050 AATTTCCAGA
*
9365060 TTCCGGCGAAAATTCCAGCGACTTTTGAATT
1 TTCCGGCGACAATTCCAGCGACTTTTGAATT
*
9365091 TTCCGGCGACAATTCCGGCGAAC-TTTGAAGTT
1 TTCCGGCGACAATTCCAGCG-ACTTTTGAA-TT
9365123 TTCCGGCGACA
1 TTCCGGCGACA
9365134 GACCCAGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
31 24 0.62
32 15 0.38
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (31 bp):
TTCCGGCGACAATTCCAGCGACTTTTGAATT
Found at i:9365218 original size:19 final size:19
Alignment explanation
Indices: 9365194--9365237 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
9365184 TCCGGCCAAT
9365194 TTCCGGCAAAATTCCCAGA
1 TTCCGGCAAAATTCCCAGA
** *
9365213 TTCCGGTGAAATTTCCAGA
1 TTCCGGCAAAATTCCCAGA
*
9365232 ATCCGG
1 TTCCGG
9365238 TACCGGCGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (19 bp):
TTCCGGCAAAATTCCCAGA
Found at i:9365238 original size:19 final size:19
Alignment explanation
Indices: 9365202--9365238 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
9365192 ATTTCCGGCA
*
9365202 AAATTCCCAGATTCCGGTG
1 AAATTCCCAGAATCCGGTG
*
9365221 AAATTTCCAGAATCCGGT
1 AAATTCCCAGAATCCGGT
9365239 ACCGGCGTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (19 bp):
AAATTCCCAGAATCCGGTG
Found at i:9365981 original size:153 final size:157
Alignment explanation
Indices: 9365564--9366003 Score: 730
Period size: 153 Copynumber: 2.8 Consensus size: 157
9365554 ATTTTTTTTC
* * *
9365564 TTTTTCTTTAATTAATCCGACGACGGAGCCTCTACAAGTAAAAACAGTAGTTTTTCTTGCATACT
1 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGT-GAAACAGTAGTTTTTCTTGCATACT
*
9365629 CCTGAGGTGAGGGAATTTTCTCAATTTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTC
65 CTTGAGGTGAGGGAATTTTCTCAATTTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTC
*
9365694 CGATAATTAATTACTTGGCTGATTTTGAT
130 CGA-AATTAATTAATTGGCTGATTTTGAT
* *
9365723 TTTTT-TTTTAATAAACCCGACGACGGAGCCTCTGCAAGTGAAACAGTAG-TTTTCTTGCATACT
1 TTTTTCTTTAAAT-AATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACT
*
9365786 CTTGAGGTGAGGGAATTTTCTCAATTTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTT
65 CTTGAGGTGAGGGAATTTTCTCAATTTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTC
*
9365851 CG-AA-TAATTAATTGGTTGATTTTG-T
130 CGAAATTAATTAATTGGCTGATTTTGAT
9365876 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
1 TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
9365941 TTGAGGTGAGGGAATTTTCTCAA-TTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTC
66 TTGAGGTGAGGGAATTTTCTCAATTTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTC
9366004 AACAACTAAT
Statistics
Matches: 266, Mismatches: 12, Indels: 12
0.92 0.04 0.04
Matches are distributed among these distances:
153 80 0.30
154 62 0.23
155 2 0.01
157 79 0.30
158 14 0.05
159 29 0.11
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (157 bp):
TTTTTCTTTAAATAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGCATACTC
TTGAGGTGAGGGAATTTTCTCAATTTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAATTTCC
GAAATTAATTAATTGGCTGATTTTGAT
Found at i:9369636 original size:1 final size:1
Alignment explanation
Indices: 9369632--9369706 Score: 51
Period size: 1 Copynumber: 75.0 Consensus size: 1
9369622 AAAAATGATG
* * * ** * ** * *
9369632 AAAAAAAAAGAAAAAAAAAGAAAAAAAAGAAAAAATGAAAAAAAAAAGAAGGAAAAAAAGAGAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
9369697 ATAAAAAAAA
1 AAAAAAAAAA
9369707 GAGATTCAAA
Statistics
Matches: 55, Mismatches: 19, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.85, C:0.00, G:0.12, T:0.03
Consensus pattern (1 bp):
A
Found at i:9369644 original size:10 final size:10
Alignment explanation
Indices: 9369631--9369703 Score: 78
Period size: 10 Copynumber: 7.0 Consensus size: 10
9369621 AAAAAATGAT
9369631 GAAAAAAAAA
1 GAAAAAAAAA
9369641 GAAAAAAAAA
1 GAAAAAAAAA
9369651 G-AAAAAAAA
1 GAAAAAAAAA
9369660 GAAAAAATGAAA
1 GAAAAAA--AAA
9369672 -AAAAAAAGAA
1 GAAAAAAA-AA
*
9369682 GGAAAAAAAGA
1 -GAAAAAAAAA
9369693 GAAAATAAAAA
1 GAAAA-AAAAA
9369704 AAAGAGATTC
Statistics
Matches: 54, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
9 10 0.19
10 23 0.43
11 11 0.20
12 10 0.19
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.03
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:9369678 original size:19 final size:19
Alignment explanation
Indices: 9369617--9369681 Score: 80
Period size: 19 Copynumber: 3.4 Consensus size: 19
9369607 ACAATGGATG
9369617 AAAA-AAAAAATGATGAAAAA
1 AAAAGAAAAAATGA--AAAAA
*
9369637 AAAAGAAAAAA-AAAGAAAA
1 AAAAGAAAAAATGAA-AAAA
9369656 AAAAGAAAAAATGAAAAAA
1 AAAAGAAAAAATGAAAAAA
9369675 AAAAGAA
1 AAAAGAA
9369682 GGAAAAAAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
18 1 0.03
19 26 0.65
20 7 0.17
21 6 0.15
ACGTcount: A:0.85, C:0.00, G:0.11, T:0.05
Consensus pattern (19 bp):
AAAAGAAAAAATGAAAAAA
Found at i:9369697 original size:19 final size:16
Alignment explanation
Indices: 9369635--9369678 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
9369625 AATGATGAAA
9369635 AAAAAAGAAAAAAAAAG
1 AAAAAA-AAAAAAAAAG
*
9369652 AAAAAAAAGAAAAAATG
1 AAAAAAAA-AAAAAAAG
9369669 AAAAAAAAAA
1 AAAAAAAAAA
9369679 GAAGGAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 4 0.16
17 21 0.84
ACGTcount: A:0.89, C:0.00, G:0.09, T:0.02
Consensus pattern (16 bp):
AAAAAAAAAAAAAAAG
Found at i:9369708 original size:28 final size:29
Alignment explanation
Indices: 9369631--9369706 Score: 91
Period size: 31 Copynumber: 2.6 Consensus size: 29
9369621 AAAAAATGAT
*
9369631 GAAAAAA-AAAGAAAAAAAAAGAAAAAAAA
1 GAAAAAATAAA-AAAAAAGAAGAAAAAAAA
*
9369660 GAAAAAATGAAAAAAAAAAGAAGGAAAAAAA
1 GAAAAAAT--AAAAAAAAAGAAGAAAAAAAA
*
9369691 GAGAAAATAAAAAAAA
1 GAAAAAATAAAAAAAA
9369707 GAGATTCAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 15 0.37
31 23 0.56
32 3 0.07
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (29 bp):
GAAAAAATAAAAAAAAAGAAGAAAAAAAA
Found at i:9370969 original size:41 final size:39
Alignment explanation
Indices: 9370918--9371900 Score: 1392
Period size: 41 Copynumber: 24.0 Consensus size: 39
9370908 GTCTAGGAGT
*
9370918 ATTTACTTTTCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTCGT--TGCCTCTGTTTAGAGGAGCA
9370959 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTTGCCTCTGTTTAGAGGAGCA
9370999 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTTGCCTCTGTTTAGAGGAGCA
*
9371039 ATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CAAAGTCGT--TGCCTCTGTTTAGAGGAGCA
9371081 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTCGT--TGCCTCTGTTTAGAGGAGCA
9371122 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTC-AAAGTCGT--TGCCTCTGTTTAGAGGAGCA
9371164 ATTTACTTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTAC-TTTTCAAAG-TCGTTGCCTCTGTTTAGAGGAGCA
*
9371205 ATTTATTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-T-CGTTGCCTCTGTTTAGAGGAGCA
9371246 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTTGCCTCTGTTTAGAGGAGCA
* *
9371286 ATTTACTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTCGT--TGCCTCTGTTTAGAGGAGCA
9371327 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTTGCCTCTGTTTAGAGGAGCA
9371367 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTTGCCTCTGTTTAGAGGAGCA
*
9371407 ATTTACTTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CAAAGTCGT--TGCCTCTGTTTAGAGGAGCA
9371449 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTC-AAAGTCGT--TGCCTCTGTTTAGAGGAGCA
*
9371491 ATTTATTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CAAAGTCGT--TGCCTCTGTTTAGAGGAGCA
9371533 ATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGTCGT--TGCCTCTGTTTAGAGGAGCA
* *
9371574 ATTTATTTTTTCAAAGTTCGTTGCCTCTATTTAGAGGAGCA
1 ATTTA-CTTTTCAAAG-TCGTTGCCTCTGTTTAGAGGAGCA
9371615 ATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-TCGTTGCCTCTGTTTAGAGGAGCA
*
9371655 ATTTATTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-T-CGTTGCCTCTGTTTAGAGGAGCA
9371696 ATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTC-AAAGTCGT--TGCCTCTGTTTAGAGGAGCA
*
9371738 ATTTATTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAG-T-CGTTGCCTCTGTTTAGAGGAGCA
*
9371779 ATTTATTTTTCCAAAGTCGTGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTT-CAAAGTC--GTTGCCTCTGTTTAGAGGAGCA
*
9371821 ATTTACTTTCCAAAGTCCGTTGCCTCTGTTTAGAGGAGCA
1 ATTTACTTTTCAAAGT-CGTTGCCTCTGTTTAGAGGAGCA
*
9371861 ATTTAC-TTTCAAAAGTCGTTGAGTCTCTGTTTAGAGGAGC
1 ATTTACTTTTC-AAAGTCGTT--GCCTCTGTTTAGAGGAGC
9371901 TTCAGCCAAA
Statistics
Matches: 887, Mismatches: 24, Indels: 62
0.91 0.02 0.06
Matches are distributed among these distances:
39 11 0.01
40 280 0.32
41 316 0.36
42 263 0.30
43 17 0.02
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.38
Consensus pattern (39 bp):
ATTTACTTTTCAAAGTCGTTGCCTCTGTTTAGAGGAGCA
Found at i:9371519 original size:247 final size:242
Alignment explanation
Indices: 9370918--9371900 Score: 1502
Period size: 247 Copynumber: 4.0 Consensus size: 242
9370908 GTCTAGGAGT
9370918 ATTTAC-TTTTCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTG
1 ATTTACTTTTTCAAAGTTCGT--TACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTG
9370981 CCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACT
64 CCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTAC-
9371046 TTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG-TCGTGGTGCCTCTG
128 TTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGT--TGCCTCTG
9371110 TTTAGAGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCA
191 TTTAGAGGAGCAATTTACTTTTCAAAAGTCGT--TGCCTCTGTTTAGAGGAGCA
* *
9371164 ATTTACTTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCCGTTGC
1 ATTTACTTTTTCAAAGTTCGTTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTT-CGTTGC
9371229 CTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTT
65 CTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTT
9371294 TCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTA
130 TCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTA
9371359 GAGGAGCAATTTACTTTTC-AAAGTTCGTTGCCTCTGTTTAGAGGAGCA
195 GAGGAGCAATTTACTTTTCAAAAG-TCGTTGCCTCTGTTTAGAGGAGCA
*
9371407 ATTTACTTTTCCAAAG-TCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAG-TCGTG
1 ATTTACTTTTTCAAAGTTCGT--TACCTCTGTTTAGAGGAGCAATTTACTTTTC-AAAGTTCGT-
*
9371470 GTGCCTCTGTTTAGAGGAGCAATTTATTTTTCCAAAG-TCGTGGTGCCTCTGTTTAGAGGAGCAA
62 -TGCCTCTGTTTAGAGGAGCAATTTACTTTT-CAAAGTTCGT--TGCCTCTGTTTAGAGGAGCAA
* * *
9371534 TTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTTCAAAGTTCGTTGCC
123 TTTACTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTA-CTTTTCAAAGTTCGTTGCC
*
9371599 TCTATTTAGAGGAGCAATTTACTTTTC-AAAGTTCGTTGCCTCTGTTTAGAGGAGCA
187 TCTGTTTAGAGGAGCAATTTACTTTTCAAAAG-TCGTTGCCTCTGTTTAGAGGAGCA
*
9371655 ATTTA-TTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAAG-TCGTGG
1 ATTTACTTTTTCAAAGTT-CGTTACCTCTGTTTAGAGGAGCAATTTACTTTTC-AAAGTTCGT--
*
9371718 TGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTCCGTTGCCTCTGTTTAGAGGAGCAATTT
62 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTT-CGTTGCCTCTGTTTAGAGGAGCAATTT
* * * * *
9371783 ATTTTTCCAAAGTCGTGTTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCCGTTGCCTCT
126 A-CTTTCCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCT
*
9371848 GTTTAGAGGAGCAATTTAC-TTTCAAAAGTCGTTGAGTCTCTGTTTAGAGGAGC
190 GTTTAGAGGAGCAATTTACTTTTCAAAAGTCGTT--GCCTCTGTTTAGAGGAGC
9371901 TTCAGCCAAA
Statistics
Matches: 695, Mismatches: 20, Indels: 43
0.92 0.03 0.06
Matches are distributed among these distances:
242 4 0.01
243 38 0.05
244 34 0.05
245 81 0.12
246 167 0.24
247 282 0.41
248 86 0.12
249 3 0.00
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.38
Consensus pattern (242 bp):
ATTTACTTTTTCAAAGTTCGTTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCC
TCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAGAGGAGCAATTTACTTT
CCAAAGTCGTGGTACCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTTCGTTGCCTCTGTTTAG
AGGAGCAATTTACTTTTCAAAAGTCGTTGCCTCTGTTTAGAGGAGCA
Found at i:9371929 original size:16 final size:16
Alignment explanation
Indices: 9371908--9372025 Score: 123
Period size: 16 Copynumber: 7.3 Consensus size: 16
9371898 AGCTTCAGCC
*
9371908 AAAAAAAAAA-AAACA
1 AAAAAAAAAACAAAAA
9371923 AAAAAAAAAACAAAAA
1 AAAAAAAAAACAAAAA
*
9371939 AACAAAAAAACAAAAA
1 AAAAAAAAAACAAAAA
9371955 CAAAAAAATAAA-AAAAA
1 -AAAAAAA-AAACAAAAA
** *
9371972 ATCAAAAAAATAAAAA
1 AAAAAAAAAACAAAAA
*
9371988 AAAATAAAAACAAAAA
1 AAAAAAAAAACAAAAA
* *
9372004 TAAAAAAAATCAAAAA
1 AAAAAAAAAACAAAAA
9372020 TAAAAA
1 -AAAAA
9372026 TGTTGAGTTG
Statistics
Matches: 85, Mismatches: 13, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
15 13 0.15
16 54 0.64
17 15 0.18
18 3 0.04
ACGTcount: A:0.87, C:0.07, G:0.00, T:0.06
Consensus pattern (16 bp):
AAAAAAAAAACAAAAA
Found at i:9371940 original size:22 final size:21
Alignment explanation
Indices: 9371908--9372012 Score: 115
Period size: 22 Copynumber: 5.0 Consensus size: 21
9371898 AGCTTCAGCC
*
9371908 AAAAA-AAAAAAAACAAAAAA
1 AAAAACAAAAAAAAAAAAAAA
*
9371928 AAAAACAAAAAAACAAAAAAAC
1 AAAAACAAAAAAA-AAAAAAAA
9371950 AAAAACAAAAAAATAAAAAAAA
1 AAAAACAAAAAAA-AAAAAAAA
* * *
9371972 ATCAAA-AAAATAAAAAAAAAT
1 A-AAAACAAAAAAAAAAAAAAA
*
9371993 AAAAACAAAAATAAAAAAAA
1 AAAAACAAAAAAAAAAAAAA
9372013 TCAAAAATAA
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
20 8 0.11
21 27 0.38
22 33 0.46
23 3 0.04
ACGTcount: A:0.89, C:0.07, G:0.00, T:0.05
Consensus pattern (21 bp):
AAAAACAAAAAAAAAAAAAAA
Found at i:9371968 original size:41 final size:41
Alignment explanation
Indices: 9371909--9372012 Score: 140
Period size: 41 Copynumber: 2.5 Consensus size: 41
9371899 GCTTCAGCCA
*
9371909 AAAAAAAAAAAACAAAAAAAAAAACAAAAAAACAAAAAAAC
1 AAAAAAAAAAAATAAAAAAAAAAACAAAAAAACAAAAAAAC
* *
9371950 AAAAACAAAAAAAT-AAAAAAAAATCAAAAAAATAAAAAAA-
1 AAAAA-AAAAAAATAAAAAAAAAAACAAAAAAACAAAAAAAC
9371990 AATAAAAACAAAAATAAAAAAAA
1 AA-AAAAA-AAAAATAAAAAAAA
9372013 TCAAAAATAA
Statistics
Matches: 56, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
40 4 0.07
41 38 0.68
42 14 0.25
ACGTcount: A:0.88, C:0.07, G:0.00, T:0.05
Consensus pattern (41 bp):
AAAAAAAAAAAATAAAAAAAAAAACAAAAAAACAAAAAAAC
Found at i:9372018 original size:22 final size:21
Alignment explanation
Indices: 9371909--9372026 Score: 72
Period size: 22 Copynumber: 5.6 Consensus size: 21
9371899 GCTTCAGCCA
9371909 AAAAAAAAAAAA-CAAAAA-A
1 AAAAAAAAAAAATCAAAAACA
9371928 AAAAACAAAAAAA-CAAAAAAACA
1 AAAAA-AAAAAAATC--AAAAACA
*
9371951 AAAACAAAAAAAT-AAAAA-A
1 AAAAAAAAAAAATCAAAAACA
** *
9371970 AAATCAAAAAAAT-AAAAAAA
1 AAAAAAAAAAAATCAAAAACA
9371990 AATAAAAACAAAAAT-AAAAA-A
1 AA-AAAAA-AAAAATCAAAAACA
9372011 AATCAAAAATAAAAAT
1 AA--AAAAA-AAAAAT
9372027 GTTGAGTTGA
Statistics
Matches: 84, Mismatches: 6, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
19 23 0.27
20 16 0.19
21 6 0.07
22 34 0.40
23 5 0.06
ACGTcount: A:0.86, C:0.07, G:0.00, T:0.07
Consensus pattern (21 bp):
AAAAAAAAAAAATCAAAAACA
Found at i:9372019 original size:49 final size:49
Alignment explanation
Indices: 9371908--9372024 Score: 143
Period size: 49 Copynumber: 2.4 Consensus size: 49
9371898 AGCTTCAGCC
*
9371908 AAAAAAAAA-AAAACAAAA--AAAAAAACAAAAAAACAAAAAAACAAAA
1 AAAAAAAAATAAAAAAAAATCAAAAAAACAAAAAAACAAAAAAACAAAA
* *
9371954 ACAAAAAAATAAAAAAAAATCAAAAAAATAAAAAAA-AATAAAAACAAAA
1 AAAAAAAAATAAAAAAAAATCAAAAAAACAAAAAAACAA-AAAAACAAAA
9372003 ATAAAAAAAATCAAAAATAAAA
1 A-AAAAAAAAT-AAAAA-AAAA
9372025 ATGTTGAGTT
Statistics
Matches: 60, Mismatches: 4, Indels: 8
0.83 0.06 0.11
Matches are distributed among these distances:
46 8 0.13
47 8 0.13
48 2 0.03
49 25 0.42
50 8 0.13
51 5 0.08
52 4 0.07
ACGTcount: A:0.87, C:0.07, G:0.00, T:0.06
Consensus pattern (49 bp):
AAAAAAAAATAAAAAAAAATCAAAAAAACAAAAAAACAAAAAAACAAAA
Found at i:9372025 original size:1 final size:1
Alignment explanation
Indices: 9371908--9372012 Score: 102
Period size: 1 Copynumber: 105.0 Consensus size: 1
9371898 AGCTTCAGCC
* * * * * *
9371908 AAAAAAAAAAAAACAAAAAAAAAAACAAAAAAACAAAAAAACAAAAACAAAAAAATAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
** * * * *
9371973 TCAAAAAAATAAAAAAAAATAAAAACAAAAATAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
9372013 TCAAAAATAA
Statistics
Matches: 81, Mismatches: 23, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 81 1.00
ACGTcount: A:0.89, C:0.07, G:0.00, T:0.05
Consensus pattern (1 bp):
A
Found at i:9372153 original size:20 final size:20
Alignment explanation
Indices: 9372128--9372186 Score: 100
Period size: 20 Copynumber: 3.0 Consensus size: 20
9372118 CAGGTCCGGG
9372128 CCCGGATCAATTGGGCCTGA
1 CCCGGATCAATTGGGCCTGA
9372148 CCCGGATCAATTGGGCCTGA
1 CCCGGATCAATTGGGCCTGA
* *
9372168 CCCAGATCATTTGGGCCTG
1 CCCGGATCAATTGGGCCTG
9372187 GCCCAAATGG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.22
Consensus pattern (20 bp):
CCCGGATCAATTGGGCCTGA
Found at i:9372361 original size:3 final size:3
Alignment explanation
Indices: 9372353--9372381 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
9372343 AGTTATATAT
9372353 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9372382 TTTGTAAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:9372928 original size:32 final size:30
Alignment explanation
Indices: 9372857--9372930 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 30
9372847 AATTTCCAGA
* *
9372857 TTCCGGCGAAAATTCCGGCGACTTTTGAATT
1 TTCCGGCGACAATTCCGGCGAC-TTTGAAGT
9372888 TTCCGGCGACAATTCCGGCGAAC-TTGAAAGGT
1 TTCCGGCGACAATTCCGGCG-ACTTTG-AA-GT
9372920 TTCCGGCGACA
1 TTCCGGCGACA
9372931 GACCCAGTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
30 3 0.08
31 21 0.55
32 14 0.37
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (30 bp):
TTCCGGCGACAATTCCGGCGACTTTGAAGT
Found at i:9373325 original size:1 final size:1
Alignment explanation
Indices: 9373319--9373353 Score: 70
Period size: 1 Copynumber: 35.0 Consensus size: 1
9373309 GCCGCTCCAG
9373319 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9373354 GACTTTGATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:9373668 original size:157 final size:153
Alignment explanation
Indices: 9373376--9373837 Score: 746
Period size: 152 Copynumber: 3.0 Consensus size: 153
9373366 ATCTTGATTT
* * * *
9373376 TTTTCTTTTTTCTTTAATTAATCCGACGACGGAGCCTCTACAAGTAAAAACAGTAGTTTTTCTTG
1 TTTTGTTTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGT-GAAACAGTAGTTTTTCTTG
9373441 CATACTCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATA
65 CATACTCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATA
*
9373506 ATTTCCGATAATTAATTACTTGGCTGA
130 ATTTCC-A-AA-TAATTACTTGGATGA
* *
9373533 TTTTGATTTTTTTTTTAATAAACCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTG
1 TTTTG-TTTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTG
* *
9373598 CATACTCTTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTTAATTGAGAATA
65 CATACTCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATA
*
9373663 ATTTCC-AATAATTAATTGGATGA
130 ATTTCCAAATAATTACTTGGATGA
*
9373686 TTTTGTTTTTTCTTTAATAAATCCGACGACGGAGCCCCTGCAAGTGAAACAGTAGTTTTTCTTGC
1 TTTTGTTTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGC
9373751 ATACTCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
66 ATACTCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
9373816 TTTCCAACAACTAATTACTTGG
131 TTTCC-A-AA-TAATTACTTGG
9373838 TAAAATTTTA
Statistics
Matches: 284, Mismatches: 16, Indels: 11
0.91 0.05 0.04
Matches are distributed among these distances:
152 125 0.44
153 18 0.06
154 2 0.01
155 2 0.01
156 10 0.04
157 91 0.32
158 36 0.13
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (153 bp):
TTTTGTTTTTTCTTTAATAAATCCGACGACGGAGCCTCTGCAAGTGAAACAGTAGTTTTTCTTGC
ATACTCCTGAGGTGAGGGAATTTTCTCAATTTTCTGCTAAAAGTATTAGAGTCAATTGAGAATAA
TTTCCAAATAATTACTTGGATGA
Found at i:9374743 original size:44 final size:42
Alignment explanation
Indices: 9374587--9374782 Score: 212
Period size: 43 Copynumber: 4.5 Consensus size: 42
9374577 GTTAGAGGAT
* * * ** * *
9374587 TATTTTAAAGTTATTTAGCCTCTGAATGGAGGAATCTATTTCT
1 TATTTTAAAGTTGTTTAGCCTCTGAAT-AAAGAGCCCATTTCA
* **
9374630 TATTTTAAAGTTGTTTAGCCTCTAAATAGAAGAGCTTATTTCA
1 TATTTTAAAGTTGTTTAGCCTCTGAATA-AAGAGCCCATTTCA
* *
9374673 TATTTTAAAGTTGTTTAGCCTTTGAATAAAGAAGCCCATTCTTA
1 TATTTTAAAGTTGTTTAGCCTCTGAATAAAG-AGCCCATT-TCA
* *
9374717 TATTTTAAAGTTGTTTAGACTCTGAATTGAAGAGCCCATTTCA
1 TATTTTAAAGTTGTTTAGCCTCTGAA-TAAAGAGCCCATTTCA
*
9374760 TATTTTAAAGTTTTTTAGCCTCT
1 TATTTTAAAGTTGTTTAGCCTCT
9374783 ATTTAGAAGA
Statistics
Matches: 130, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
42 3 0.02
43 89 0.68
44 34 0.26
45 4 0.03
ACGTcount: A:0.30, C:0.13, G:0.14, T:0.43
Consensus pattern (42 bp):
TATTTTAAAGTTGTTTAGCCTCTGAATAAAGAGCCCATTTCA
Found at i:9374792 original size:43 final size:43
Alignment explanation
Indices: 9374587--9374824 Score: 209
Period size: 43 Copynumber: 5.5 Consensus size: 43
9374577 GTTAGAGGAT
* * * ** * *
9374587 TATTTTAAAGTTATTTAGCCTCTGAA-TGGAGGAATCTATTTCT
1 TATTTTAAAGTTGTTTAGCCTCT-AATTAGAAGAGCCCATTTCA
* **
9374630 TATTTTAAAGTTGTTTAGCCTCTAAATAGAAGAGCTTATTTCA
1 TATTTTAAAGTTGTTTAGCCTCTAATTAGAAGAGCCCATTTCA
* *
9374673 TATTTTAAAGTTGTTTAGCCTTTGAA-TA-AAGAAGCCCATTCTTA
1 TATTTTAAAGTTGTTTAGCCTCT-AATTAGAAG-AGCCCATT-TCA
*
9374717 TATTTTAAAGTTGTTTAGACTCTGAATT-GAAGAGCCCATTTCA
1 TATTTTAAAGTTGTTTAGCCTCT-AATTAGAAGAGCCCATTTCA
* * * *
9374760 TATTTTAAAGTTTTTTAGCCTCTATTTAGAAGAGTCAATTTC-
1 TATTTTAAAGTTGTTTAGCCTCTAATTAGAAGAGCCCATTTCA
**
9374802 TCATTTTAATTTTGTTT-GCCTCT
1 T-ATTTTAAAGTTGTTTAGCCTCT
9374825 GTTTAGAGGA
Statistics
Matches: 165, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
42 15 0.09
43 110 0.67
44 36 0.22
45 4 0.02
ACGTcount: A:0.29, C:0.13, G:0.14, T:0.45
Consensus pattern (43 bp):
TATTTTAAAGTTGTTTAGCCTCTAATTAGAAGAGCCCATTTCA
Found at i:9375532 original size:19 final size:19
Alignment explanation
Indices: 9375473--9375534 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 19
9375463 AATTATGCAC
**
9375473 ACAATAAATATAAAAAAAT
1 ACAATAAATATAAAATCAT
* *
9375492 GCAAT-AATAT-ATATCAT
1 ACAATAAATATAAAATCAT
*
9375509 GCAATAAATATAAAATCAT
1 ACAATAAATATAAAATCAT
9375528 ACAATAA
1 ACAATAA
9375535 TAATAAATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 9 0.26
18 10 0.29
19 16 0.46
ACGTcount: A:0.61, C:0.10, G:0.03, T:0.26
Consensus pattern (19 bp):
ACAATAAATATAAAATCAT
Found at i:9375540 original size:19 final size:19
Alignment explanation
Indices: 9375494--9375541 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
9375484 AAAAAAATGC
* *
9375494 AATAATATATATCATGCAAT
1 AATAATA-AAATCATACAAT
9375514 AA-ATATAAAATCATACAAT
1 AATA-ATAAAATCATACAAT
9375533 AATAATAAA
1 AATAATAAA
9375542 TAAATAAATA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.60, C:0.08, G:0.02, T:0.29
Consensus pattern (19 bp):
AATAATAAAATCATACAAT
Found at i:9375563 original size:48 final size:49
Alignment explanation
Indices: 9375509--9375630 Score: 185
Period size: 48 Copynumber: 2.5 Consensus size: 49
9375499 TATATATCAT
9375509 GCAATAAATATAAAATCATACAATAAT-AATAAATAAATAAATAACCAA
1 GCAATAAATATAAAATCATACAATAATAAATAAATAAATAAATAACCAA
* *
9375557 GCAATAAATATAAAATCATGCAATAATAAATAAATAAATAAATAACCAT
1 GCAATAAATATAAAATCATACAATAATAAATAAATAAATAAATAACCAA
9375606 GCAAATATTAATAT-AAATCATACAA
1 GC-AATA--AATATAAAATCATACAA
9375631 ATAAACATGC
Statistics
Matches: 67, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
48 26 0.39
49 22 0.33
50 4 0.06
51 10 0.15
52 5 0.07
ACGTcount: A:0.61, C:0.11, G:0.03, T:0.25
Consensus pattern (49 bp):
GCAATAAATATAAAATCATACAATAATAAATAAATAAATAAATAACCAA
Found at i:9375564 original size:19 final size:19
Alignment explanation
Indices: 9375540--9375589 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
9375530 AATAATAATA
9375540 AATAAATAAATAACCAAGC
1 AATAAATAAATAACCAAGC
* *
9375559 AATAAATATAA-AATCATGC
1 AATAAATA-AATAACCAAGC
9375578 AAT-AATAAATAA
1 AATAAATAAATAA
9375590 ATAAATAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 2 0.07
18 6 0.22
19 17 0.63
20 2 0.07
ACGTcount: A:0.64, C:0.10, G:0.04, T:0.22
Consensus pattern (19 bp):
AATAAATAAATAACCAAGC
Found at i:9375593 original size:30 final size:32
Alignment explanation
Indices: 9375559--9375642 Score: 84
Period size: 30 Copynumber: 2.7 Consensus size: 32
9375549 ATAACCAAGC
*
9375559 AATAAATATAA-AATCATGCA-ATAATAA-ATA
1 AATAAATA-AATAACCATGCAAATAATAATATA
*
9375589 AATAAATAAATAACCATGCAAATATTAATATA
1 AATAAATAAATAACCATGCAAATAATAATATA
* * *
9375621 AATCATACAAATAAACATGCAA
1 AAT-AAATAAATAACCATGCAA
9375643 TTAAATATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 2 0.04
30 16 0.36
31 6 0.13
32 6 0.13
33 15 0.33
ACGTcount: A:0.61, C:0.11, G:0.04, T:0.25
Consensus pattern (32 bp):
AATAAATAAATAACCATGCAAATAATAATATA
Found at i:9375648 original size:53 final size:51
Alignment explanation
Indices: 9375506--9375707 Score: 168
Period size: 53 Copynumber: 4.0 Consensus size: 51
9375496 TAATATATAT
* * *
9375506 CATGC-AATA-AATATAAAATCATAC-AATAATAAT-AAATAAATAAATAAC
1 CATGCAAATATAATAT-AAATCATGCAAATAAAAATGAATTAAATAAATAAC
* *
9375554 CAAGC-AATA-AATATAAAATCATGC-AATAATAAAT-AAATAAATAAATAAC
1 CATGCAAATATAATAT-AAATCATGCAAATAA-AAATGAATTAAATAAATAAC
* * * *
9375603 CATGCAAATATTAATATAAATCATACAAATAAACATGCAATTAAATATATAAT
1 CATGCAAATA-TAATATAAATCATGCAAATAAAAATG-AATTAAATAAATAAC
* * * *
9375656 AATACAAATAATAATATAAATCATGCAAATAAATATGTAATTAAATATATAA
1 CATGCAAAT-ATAATATAAATCATGCAAATAAAAATG-AATTAAATAAATAA
9375708 TAATAATCAT
Statistics
Matches: 132, Mismatches: 14, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
48 27 0.20
49 22 0.17
50 4 0.03
51 11 0.08
52 10 0.08
53 57 0.43
54 1 0.01
ACGTcount: A:0.60, C:0.09, G:0.03, T:0.27
Consensus pattern (51 bp):
CATGCAAATATAATATAAATCATGCAAATAAAAATGAATTAAATAAATAAC
Found at i:9375666 original size:32 final size:33
Alignment explanation
Indices: 9375586--9375666 Score: 96
Period size: 32 Copynumber: 2.5 Consensus size: 33
9375576 GCAATAATAA
* * *
9375586 ATAAATAA-ATAAATAACCATGCAAATATTAAT
1 ATAAATAATACAAATAAACATGCAAATATAAAT
*
9375618 ATAAATCATACAAATAAACATGC-AAT-TAAAT
1 ATAAATAATACAAATAAACATGCAAATATAAAT
9375649 ATATAATAATACAAATAA
1 ATA-AATAATACAAATAA
9375667 TAATATAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 7 0.17
32 23 0.55
33 12 0.29
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.27
Consensus pattern (33 bp):
ATAAATAATACAAATAAACATGCAAATATAAAT
Found at i:9375708 original size:41 final size:40
Alignment explanation
Indices: 9375631--9375714 Score: 105
Period size: 41 Copynumber: 2.0 Consensus size: 40
9375621 AATCATACAA
*
9375631 ATAAACATGCAATTAAATATATAATAATACAAATAATAAT
1 ATAAACATGCAAATAAATATATAATAATACAAATAATAAT
* *
9375671 ATAAATCATGCAAATAAATATGTAATTAAATATATAATAATAAT
1 ATAAA-CATGCAAATAAATATATAA-T-AATACA-AATAATAAT
9375715 CATGTAATCA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 5 0.14
41 17 0.46
42 1 0.03
43 5 0.14
44 9 0.24
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (40 bp):
ATAAACATGCAAATAAATATATAATAATACAAATAATAAT
Found at i:9375708 original size:53 final size:53
Alignment explanation
Indices: 9375563--9375712 Score: 178
Period size: 53 Copynumber: 2.8 Consensus size: 53
9375553 CCAAGCAATA
** * * ** * *
9375563 AATATAAAATCATGC-AAT-AATAAATAAATAAATAAATAACCATGCAAATATT
1 AATAT-AAATCATGCAAATAAATATGTAATTAAATATATAATAATACAAATAAT
* * *
9375615 AATATAAATCATACAAATAAACATGCAATTAAATATATAATAATACAAATAAT
1 AATATAAATCATGCAAATAAATATGTAATTAAATATATAATAATACAAATAAT
9375668 AATATAAATCATGCAAATAAATATGTAATTAAATATATAATAATA
1 AATATAAATCATGCAAATAAATATGTAATTAAATATATAATAATA
9375713 ATCATGTAAT
Statistics
Matches: 82, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
51 8 0.10
52 8 0.10
53 66 0.80
ACGTcount: A:0.59, C:0.08, G:0.03, T:0.29
Consensus pattern (53 bp):
AATATAAATCATGCAAATAAATATGTAATTAAATATATAATAATACAAATAAT
Found at i:9375756 original size:20 final size:20
Alignment explanation
Indices: 9375732--9375824 Score: 98
Period size: 20 Copynumber: 4.6 Consensus size: 20
9375722 TCACACAAAT
* *
9375732 AAATAAATTGATAATCATGT
1 AAATAAATTAATAATCATGC
*
9375752 AAATAAATTAACT-GTCATGC
1 AAATAAATTAA-TAATCATGC
*
9375772 AGATAAATTAATAATCATGC
1 AAATAAATTAATAATCATGC
* *
9375792 AAATATATTAATAAATCATAC
1 AAATAAATTAAT-AATCATGC
*
9375813 AAATATATTAAT
1 AAATAAATTAAT
9375825 CATGTAAATA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
19 1 0.02
20 41 0.66
21 20 0.32
ACGTcount: A:0.52, C:0.09, G:0.06, T:0.33
Consensus pattern (20 bp):
AAATAAATTAATAATCATGC
Found at i:9381490 original size:3 final size:3
Alignment explanation
Indices: 9381482--9381512 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
9381472 CATACACATT
9381482 TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9381513 CTTTTTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:9382431 original size:13 final size:13
Alignment explanation
Indices: 9382413--9382437 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9382403 GTGCTTTTTC
9382413 AAAATATATAAAA
1 AAAATATATAAAA
9382426 AAAATATATAAA
1 AAAATATATAAA
9382438 CAAATTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AAAATATATAAAA
Found at i:9387140 original size:23 final size:23
Alignment explanation
Indices: 9387087--9387140 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
9387077 CTATCTTCAT
* *
9387087 AATGCAATTTTTTATCATATTAA
1 AATGTAATTATTTATCATATTAA
**
9387110 AAAATAATTATTTATCTATATT-A
1 AATGTAATTATTTATC-ATATTAA
9387133 AATGTAAT
1 AATGTAAT
9387141 CCTACAACGA
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (23 bp):
AATGTAATTATTTATCATATTAA
Found at i:9389898 original size:24 final size:24
Alignment explanation
Indices: 9389868--9389916 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
9389858 GAACTATAGT
*
9389868 TTAAAAAAAAGTAAAGAGACAGAAA
1 TTAAAAATAAGT-AAGAGACAGAAA
9389893 TTAAAAATAAGTAAGAGACAGAAA
1 TTAAAAATAAGTAAGAGACAGAAA
9389917 GACAGAGCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.65, C:0.04, G:0.16, T:0.14
Consensus pattern (24 bp):
TTAAAAATAAGTAAGAGACAGAAA
Found at i:9395407 original size:2 final size:2
Alignment explanation
Indices: 9395400--9395428 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
9395390 TGCAGCATAC
9395400 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9395429 AATAGGTATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9398725 original size:20 final size:20
Alignment explanation
Indices: 9398681--9398725 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
9398671 TGTATGTTTA
*
9398681 GTATTACTTGGTTGAGAATT
1 GTATTACTTGGTTGAGAAGT
* * *
9398701 ATATTACTTGGTTGTGAGGT
1 GTATTACTTGGTTGAGAAGT
9398721 GTATT
1 GTATT
9398726 TTCATGTTAC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.22, C:0.04, G:0.27, T:0.47
Consensus pattern (20 bp):
GTATTACTTGGTTGAGAAGT
Found at i:9400565 original size:19 final size:19
Alignment explanation
Indices: 9400530--9400568 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9400520 ATAAATTAAA
9400530 ATTAAATAAAAATAATTTT
1 ATTAAATAAAAATAATTTT
*
9400549 ATTAATATAATAA-AATTTT
1 ATTAA-ATAAAAATAATTTT
9400568 A
1 A
9400569 AATCAAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTAAATAAAAATAATTTT
Found at i:9400991 original size:3 final size:3
Alignment explanation
Indices: 9400985--9401042 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
9400975 AACAACAACA
9400985 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9401033 AAT AAT AAT A
1 AAT AAT AAT A
9401043 GTGGCAGGTT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:9401988 original size:13 final size:13
Alignment explanation
Indices: 9401970--9401997 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
9401960 CCAAACTTGT
9401970 TACATCTAACACA
1 TACATCTAACACA
9401983 TACATCTAACACA
1 TACATCTAACACA
9401996 TA
1 TA
9401998 AATTAAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (13 bp):
TACATCTAACACA
Found at i:9404171 original size:23 final size:22
Alignment explanation
Indices: 9404119--9404171 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
9404109 CTATCTTCAT
*
9404119 AATGCAATTTTTATCATATTAA
1 AATGTAATTTTTATCATATTAA
**
9404141 AAAATAATTATTTATCTATATT-A
1 AATGTAATT-TTTATC-ATATTAA
9404164 AATGTAAT
1 AATGTAAT
9404172 CCTACAACGA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
22 6 0.25
23 13 0.54
24 5 0.21
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (22 bp):
AATGTAATTTTTATCATATTAA
Found at i:9406921 original size:24 final size:23
Alignment explanation
Indices: 9406894--9406938 Score: 72
Period size: 23 Copynumber: 1.9 Consensus size: 23
9406884 TATAGTTTAA
9406894 AAAAAAAGTAAAGAGACAGAAATT
1 AAAAAAAGT-AAGAGACAGAAATT
*
9406918 AAAATAAGTAAGAGACAGAAA
1 AAAAAAAGTAAGAGACAGAAA
9406939 GACAGAGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.67, C:0.04, G:0.18, T:0.11
Consensus pattern (23 bp):
AAAAAAAGTAAGAGACAGAAATT
Found at i:9409574 original size:2 final size:2
Alignment explanation
Indices: 9409562--9409591 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
9409552 GGAATTGAAA
*
9409562 AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9409592 GATTTGAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9412424 original size:2 final size:2
Alignment explanation
Indices: 9412417--9412441 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
9412407 TGCAGCATAC
9412417 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
9412442 AATAGGTATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:9417612 original size:19 final size:19
Alignment explanation
Indices: 9417577--9417615 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
9417567 TAAAATTAAA
9417577 ATTAAATAAAAATAATTTT
1 ATTAAATAAAAATAATTTT
*
9417596 ATTAATATAATAA-AATTTT
1 ATTAA-ATAAAAATAATTTT
9417615 A
1 A
9417616 AATCAAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
ATTAAATAAAAATAATTTT
Found at i:9418045 original size:12 final size:12
Alignment explanation
Indices: 9418008--9418046 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
9417998 AAACGATTAA
9418008 AATAACAATCAAC
1 AATAACAA-CAAC
*
9418021 AATAACAATAAC
1 AATAACAACAAC
9418033 AATAACAACAAC
1 AATAACAACAAC
9418045 AA
1 AA
9418047 CAATAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 16 0.67
13 8 0.33
ACGTcount: A:0.67, C:0.21, G:0.00, T:0.13
Consensus pattern (12 bp):
AATAACAACAAC
Found at i:9418054 original size:3 final size:3
Alignment explanation
Indices: 9418048--9418102 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
9418038 CAACAACAAC
9418048 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
9418096 AAT AAT A
1 AAT AAT A
9418103 GTAGTAGGTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:9419095 original size:13 final size:13
Alignment explanation
Indices: 9419077--9419104 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
9419067 CCAAACTTGT
9419077 TACATCTAACACA
1 TACATCTAACACA
9419090 TACATCTAACACA
1 TACATCTAACACA
9419103 TA
1 TA
9419105 AATTAAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (13 bp):
TACATCTAACACA
Found at i:9423020 original size:39 final size:38
Alignment explanation
Indices: 9422977--9423064 Score: 90
Period size: 39 Copynumber: 2.3 Consensus size: 38
9422967 AACTAAATCC
* *
9422977 TAAACCTAAACCATAACCTTAAA-CTCTAAAG-CGAACTTT
1 TAAACCTAAA-CATAACCTTAAATC-CTAAAGTCCAAC-CT
**
9423016 TAAACCCTAAATTTAACCTTAAATCCTAAAGTCCAACCT
1 TAAA-CCTAAACATAACCTTAAATCCTAAAGTCCAACCT
9423055 TAAACCTAAA
1 TAAACCTAAA
9423065 ACCGAAATCA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
38 6 0.14
39 25 0.60
40 11 0.26
ACGTcount: A:0.44, C:0.26, G:0.03, T:0.26
Consensus pattern (38 bp):
TAAACCTAAACATAACCTTAAATCCTAAAGTCCAACCT
Found at i:9430422 original size:334 final size:334
Alignment explanation
Indices: 9429865--9430481 Score: 1234
Period size: 334 Copynumber: 1.8 Consensus size: 334
9429855 AGTTGTTAAA
9429865 CTAACAAACATATGACAGAAGATTACTTAACTGAATTCATATGAACTAAAACGAGGGCGGTTCAA
1 CTAACAAACATATGACAGAAGATTACTTAACTGAATTCATATGAACTAAAACGAGGGCGGTTCAA
9429930 TCCATATTCTTTCACTGAAGTCGTGCACAACTCCAGGATAAAAATCCTCCTAAGGATTTTTTTGT
66 TCCATATTCTTTCACTGAAGTCGTGCACAACTCCAGGATAAAAATCCTCCTAAGGATTTTTTTGT
9429995 TTGTGCGCAAATAATAAAAATAAGAATGGCGCCAATCGCCATGGTAGTAGATCCTGTCTGCCAAA
131 TTGTGCGCAAATAATAAAAATAAGAATGGCGCCAATCGCCATGGTAGTAGATCCTGTCTGCCAAA
9430060 GCCGATGTTTTCCCCTCAGCTGTTACTGTAAACGAGGTACAGCCAAGAAACAGTGCTTGGTTTCC
196 GCCGATGTTTTCCCCTCAGCTGTTACTGTAAACGAGGTACAGCCAAGAAACAGTGCTTGGTTTCC
9430125 TAATTTGTGTATCTCTATCCAATAAGTTTCACTAATGAGGGTGAAGAATCACAGTTGTTAAATTA
261 TAATTTGTGTATCTCTATCCAATAAGTTTCACTAATGAGGGTGAAGAATCACAGTTGTTAAATTA
9430190 AAATAGCAT
326 AAATAGCAT
9430199 CTAACAAACATATGACAGAAGATTACTTAACTGAATTCATATGAACTAAAACGAGGGCGGTTCAA
1 CTAACAAACATATGACAGAAGATTACTTAACTGAATTCATATGAACTAAAACGAGGGCGGTTCAA
9430264 TCCATATTCTTTCACTGAAGTCGTGCACAACTCCAGGATAAAAATCCTCCTAAGGATTTTTTTGT
66 TCCATATTCTTTCACTGAAGTCGTGCACAACTCCAGGATAAAAATCCTCCTAAGGATTTTTTTGT
9430329 TTGTGCGCAAATAATAAAAATAAGAATGGCGCCAATCGCCATGGTAGTAGATCCTGTCTGCCAAA
131 TTGTGCGCAAATAATAAAAATAAGAATGGCGCCAATCGCCATGGTAGTAGATCCTGTCTGCCAAA
9430394 GCCGATGTTTTCCCCTCAGCTGTTACTGTAAACGAGGTACAGCCAAGAAACAGTGCTTGGTTTCC
196 GCCGATGTTTTCCCCTCAGCTGTTACTGTAAACGAGGTACAGCCAAGAAACAGTGCTTGGTTTCC
9430459 TAATTTGTGTATCTCTATCCAAT
261 TAATTTGTGTATCTCTATCCAAT
9430482 CCATGTCAGA
Statistics
Matches: 283, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
334 283 1.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (334 bp):
CTAACAAACATATGACAGAAGATTACTTAACTGAATTCATATGAACTAAAACGAGGGCGGTTCAA
TCCATATTCTTTCACTGAAGTCGTGCACAACTCCAGGATAAAAATCCTCCTAAGGATTTTTTTGT
TTGTGCGCAAATAATAAAAATAAGAATGGCGCCAATCGCCATGGTAGTAGATCCTGTCTGCCAAA
GCCGATGTTTTCCCCTCAGCTGTTACTGTAAACGAGGTACAGCCAAGAAACAGTGCTTGGTTTCC
TAATTTGTGTATCTCTATCCAATAAGTTTCACTAATGAGGGTGAAGAATCACAGTTGTTAAATTA
AAATAGCAT
Found at i:9435192 original size:15 final size:16
Alignment explanation
Indices: 9435172--9435204 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
9435162 TTTTTTTTAA
9435172 TTTAATTTAATT-TTT
1 TTTAATTTAATTATTT
*
9435187 TTTAATTTTATTATTT
1 TTTAATTTAATTATTT
9435203 TT
1 TT
9435205 CATTATGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTAATTTAATTATTT
Found at i:9435195 original size:10 final size:10
Alignment explanation
Indices: 9435162--9435195 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
9435152 TATTATAGGT
9435162 TTTTTTTTAA
1 TTTTTTTTAA
**
9435172 TTTAATTTAA
1 TTTTTTTTAA
9435182 TTTTTTTTAA
1 TTTTTTTTAA
9435192 TTTT
1 TTTT
9435196 ATTATTTTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTTTTAA
Found at i:9435215 original size:3 final size:3
Alignment explanation
Indices: 9435209--9435243 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
9435199 ATTTTTCATT
9435209 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
9435244 TATTATTATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:9435248 original size:3 final size:3
Alignment explanation
Indices: 9435242--9435361 Score: 102
Period size: 3 Copynumber: 38.0 Consensus size: 3
9435232 GATGATGATG
9435242 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATCT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT-T
* *
9435291 ATT AAT ATT -TT -TT ATTT ATCT AATT ATT TTCT ATT AGTT ATCT ATT
1 ATT ATT ATT ATT ATT A-TT AT-T -ATT ATT AT-T ATT A-TT AT-T ATT
* *
9435337 AAT A-T ATTT ATCT ATT ATT TTT ATT
1 ATT ATT A-TT AT-T ATT ATT ATT ATT
9435362 TTTTTACTTT
Statistics
Matches: 99, Mismatches: 7, Indels: 22
0.77 0.05 0.17
Matches are distributed among these distances:
2 6 0.06
3 70 0.71
4 21 0.21
5 2 0.02
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:9435361 original size:43 final size:39
Alignment explanation
Indices: 9435242--9435364 Score: 133
Period size: 43 Copynumber: 3.0 Consensus size: 39
9435232 GATGATGATG
* *
9435242 ATTATTAT-TATTATTATTATTATTATTATTATTATTATT
1 ATTATTATCTATTAATATT-TTATTATTATTATTATTTTT
9435281 ATTATTATCTATTAATATTTT-TTATTTATCTAATTATTTTCT
1 ATTATTATCTATTAATATTTTATTA-TTAT-T-ATTATTTT-T
*
9435323 ATTAGTTATCTATTAATATATTTATCTATTATTTTTATTTTT
1 ATTA-TTATCTATTAATAT-TTTAT-TATTATTATTATTTTT
9435365 TTACTTTTTT
Statistics
Matches: 72, Mismatches: 3, Indels: 15
0.80 0.03 0.17
Matches are distributed among these distances:
38 3 0.04
39 14 0.19
40 10 0.14
41 7 0.10
42 6 0.08
43 21 0.29
44 4 0.06
45 5 0.07
46 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (39 bp):
ATTATTATCTATTAATATTTTATTATTATTATTATTTTT
Found at i:9435673 original size:24 final size:22
Alignment explanation
Indices: 9435605--9435673 Score: 59
Period size: 24 Copynumber: 3.0 Consensus size: 22
9435595 TAGAAACAAC
* *
9435605 TTTAAGAATTTGTGAGAA-ATTT
1 TTTAA-AATTTTTGAAAATATTT
** *
9435627 TTTAAAATTTTTGAAGCTTTTT
1 TTTAAAATTTTTGAAAATATTT
9435649 TTTGGAAAATTTTTGAAAATATTT
1 TTT--AAAATTTTTGAAAATATTT
9435673 T
1 T
9435674 AGAATCCGGA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
21 8 0.22
22 11 0.31
24 17 0.47
ACGTcount: A:0.33, C:0.01, G:0.13, T:0.52
Consensus pattern (22 bp):
TTTAAAATTTTTGAAAATATTT
Found at i:9436115 original size:3 final size:3
Alignment explanation
Indices: 9436109--9436181 Score: 87
Period size: 3 Copynumber: 24.0 Consensus size: 3
9436099 TTTTTCTTAT
* *
9436109 TTA TTA TTA TTA TT- TCTT TTA TTA TTA TTA TTA TTA TTA TCA TTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9436154 TTA TTA TTA TTA CTTA TTGA TTA -TA TTA
1 TTA TTA TTA TTA -TTA TT-A TTA TTA TTA
9436182 GAATAATTTG
Statistics
Matches: 62, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
2 3 0.05
3 52 0.84
4 7 0.11
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:9436213 original size:6 final size:6
Alignment explanation
Indices: 9436202--9436240 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
9436192 GTATTCCTTA
* *
9436202 TTTTAT TTTTAT TTTTAT TCTTAT TCTTA- TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
9436241 TTAAATGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:9436225 original size:18 final size:17
Alignment explanation
Indices: 9436199--9436239 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
9436189 TTGGTATTCC
*
9436199 TTATTTTATTTTTATTT
1 TTATTTTATTCTTATTT
9436216 TTATTCTTATTCTTA-TT
1 TTATT-TTATTCTTATTT
9436233 TTATTTT
1 TTATTTT
9436240 TTTAAATGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 2 0.09
17 12 0.55
18 8 0.36
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (17 bp):
TTATTTTATTCTTATTT
Found at i:9436366 original size:28 final size:28
Alignment explanation
Indices: 9436278--9436366 Score: 76
Period size: 28 Copynumber: 3.2 Consensus size: 28
9436268 TAAAAAAATA
9436278 TTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TTTTTGAGGAAAAGTTGAAAGTATCAAT
** * * * *
9436306 TTTTT--TTAAAA-TAGAAACTCTTAAAT
1 TTTTTGAGGAAAAGTTGAAAGT-ATCAAT
*
9436332 GCTTTTGAGGAAAAGTTGAAAGTATCAAT
1 -TTTTTGAGGAAAAGTTGAAAGTATCAAT
9436361 TTTTTG
1 TTTTTG
9436367 TACAAAAGCA
Statistics
Matches: 42, Mismatches: 14, Indels: 10
0.64 0.21 0.15
Matches are distributed among these distances:
25 6 0.14
26 8 0.19
27 4 0.10
28 10 0.24
29 8 0.19
30 6 0.14
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.40
Consensus pattern (28 bp):
TTTTTGAGGAAAAGTTGAAAGTATCAAT
Found at i:9439387 original size:161 final size:159
Alignment explanation
Indices: 9439220--9440486 Score: 715
Period size: 161 Copynumber: 7.8 Consensus size: 159
9439210 ATATAAAACC
* * * * *
9439220 GTAACTTATTCATACGTATCAAGCATGGCAATCAAGTTCAAACATTCAGACAAATTTAATATCAT
1 GTAACTTATTCACACATATCAAGCATGGAAATCAAGTTCAAACATTCAAACAAGTTTAATATCAT
* * * *
9439285 ATATTGAAGTTATCTAAACTATTAAAACAGAAATATAAATGTAAAGCTACATTTGTACCCTTTAA
66 ATATT-AAGCTATCTAAACTATTAAAACAGAAATATAACTGTAAA-TTACATTTTTACCCTTTAA
* * *
9439350 TGGCACAAAAAGTTCTAAATAGATATAAATG
129 CGGTACAAAAAGTTCTAAATAAATATAAATG
* * * * * *
9439381 GTAACTT-TCTTATACATATCAAACGT-GAAA-AAAGTTCAAACATTCAAATAAGTTTAATATCA
1 GTAACTTAT-TCACACATATCAAGCATGGAAATCAAGTTCAAACATTCAAACAAGTTTAATATCA
* * * * * *
9439443 TGTATTAGAGCTATCTAAACTGTTAAAATAGAACTATAATTGTAAAATTACATTTTTACCTTTTA
65 TATATTA-AGCTATCTAAACTATTAAAACAGAAATATAACTGT-AAATTACATTTTTACCCTTTA
* * *
9439508 ATGGTACAAAAAGTTTTAAACAAACATAAATTGTAATTTTTTAAATA
128 ACGGTACAAAAAG--TT---CTAA-ATAAA---T-A-----TAAATG
* * * * * ** * * * ** *
9439555 GCAACTTTTTCACATATACCTATAATGGAAACCAAATTCGATTATTCAAACAAGTTTAATATAAT
1 GTAACTTATTCACACATATCAAGCATGGAAATCAAGTTCAAACATTCAAACAAGTTTAATATCAT
* * * *
9439620 ATATTTAAAGTTATCTAAACAATTAAAACAGAACA-ATAA-TAGCATAATTACATTTTTGACCTT
66 ATA-TT-AAGCTATCTAAACTATTAAAACAGAA-ATATAACT-GTA-AATTACATTTTT-ACCCT
** *
9439683 TTAACATTACAAAAAG-TCTTAATCAAATATAAATG
125 TTAACGGTACAAAAAGTTCTAAAT-AAATATAAATG
* * * * *
9439718 GTAACTTTTTCACACATATCAAGCATGAAAATCAAGTTCAAGCATTCGAACAAATTTAATATCAT
1 GTAACTTATTCACACATATCAAGCATGGAAATCAAGTTCAAACATTCAAACAAGTTTAATATCAT
* * * *
9439783 ATATTGGAGCTATCTAAACTATTAAAACAAAAATATAACTGTAAAATTATATTTTTACTCTTTAA
66 ATATT-AAGCTATCTAAACTATTAAAACAGAAATATAACTGT-AAATTACATTTTTACCCTTTAA
** * * * *
9439848 CAATACAAAAA-ATCATAAATAGACATAAATA
129 CGGTACAAAAAGTTC-TAAATAAATATAAATG
* * * * *
9439879 ATAACTTTTTCACACATATC---CGTGGAAATTAAGTTC--A-ATTCAAATAAGTTTAATATCAT
1 GTAACTTATTCACACATATCAAGCATGGAAATCAAGTTCAAACATTCAAACAAGTTTAATATCAT
* ** * * * *
9439938 ATATTTAAGCTATTTGTATTATTAAAACA-AAACAATAACTGTATAATTATATTTTTTCCCTTTA
66 ATA-TTAAGCTATCTAAACTATTAAAACAGAAA-TATAACTGTA-AATTACATTTTTACCCTTTA
* * * *
9440002 ACGATA-AAAAAGTACTAAATAAACATACATG
128 ACGGTACAAAAAGTTCTAAATAAATATAAATG
* * * ** * * * *
9440033 ATAACTT-TGGCACACATATCAAGAATAAAAACCAAGTTCAAATATTCAAACAAAATTT-ATATA
1 GTAACTTAT-TCACACATATCAAGCATGGAAATCAAGTTCAAACATTCAAAC-AAGTTTAATATC
* * * * *
9440096 ATGTATTAGAGCTATCTAAACTATTAAAATAGAAATATAACTATAAAATT-CTGTTTTTGCCCTT
64 ATATATTA-AGCTATCTAAACTATTAAAACAGAAATATAACTGT-AAATTAC-ATTTTTACCCTT
** * * * *
9440160 TAACGCCATAAAAAATCCTAAACAAATATAAATG
126 TAACGGTACAAAAAGTTCTAAATAAATATAAATG
* ** * * * *
9440194 GTAACTTTTTCACACATATCAATTATAGAAATGAAGTT-AAATCATTCAGATAAGTTTAATATCA
1 GTAACTTATTCACACATATCAAGCATGGAAATCAAGTTCAAA-CATTCAAACAAGTTTAATATCA
* ** * * *
9440258 TTTATTAAAGCTATCTAAACTGCTAAAACAGAACA-ATAACTGTAAATTTATATTGTTACCTTTT
65 TATATT-AAGCTATCTAAACTATTAAAACAGAA-ATATAACTGTAAA-TTACATTTTTACCCTTT
* * * * * **
9440322 GATGGTAGAAAAAG-TCTTAAACAGATATAAACC
127 AACGGTACAAAAAGTTC-TAAATAAATATAAATG
* * ** *** * * * *
9440355 GTAACTTATTTATACATATCAAGTGTGTCCATTAAGTTCAAACATACATACACGTTTAATATCAT
1 GTAACTTATTCACACATATCAAGCATGGAAATCAAGTTCAAACATTCAAACAAGTTTAATATCAT
* * * * * ** ** *
9440420 GTATTGGAGCTATCTAAA-TGGTTAAAATAAAAATATAACTACAAAATTATGTTTTTACTCTTTA
66 ATATT-AAGCTATCTAAACT-ATTAAAACAGAAATATAACT-GTAAATTACATTTTTACCCTTTA
9440484 ACG
128 ACG
9440487 ATATATTAAG
Statistics
Matches: 854, Mismatches: 190, Indels: 124
0.73 0.16 0.11
Matches are distributed among these distances:
153 1 0.00
154 39 0.05
155 72 0.08
156 2 0.00
157 10 0.01
158 14 0.02
159 94 0.11
160 80 0.09
161 296 0.35
162 53 0.06
163 60 0.07
164 3 0.00
165 4 0.00
168 2 0.00
169 2 0.00
171 2 0.00
172 5 0.01
174 20 0.02
175 6 0.01
176 30 0.04
177 40 0.05
178 19 0.02
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.34
Consensus pattern (159 bp):
GTAACTTATTCACACATATCAAGCATGGAAATCAAGTTCAAACATTCAAACAAGTTTAATATCAT
ATATTAAGCTATCTAAACTATTAAAACAGAAATATAACTGTAAATTACATTTTTACCCTTTAACG
GTACAAAAAGTTCTAAATAAATATAAATG
Found at i:9441071 original size:13 final size:13
Alignment explanation
Indices: 9441053--9441079 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9441043 AAATCATCAA
9441053 TCTTAACTTCTGT
1 TCTTAACTTCTGT
9441066 TCTTAACTTCTGT
1 TCTTAACTTCTGT
9441079 T
1 T
9441080 AGAACTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.22, G:0.07, T:0.56
Consensus pattern (13 bp):
TCTTAACTTCTGT
Found at i:9443940 original size:21 final size:21
Alignment explanation
Indices: 9443916--9443962 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
9443906 CCTCACTACT
*
9443916 TTGAACATCAATA-CTATCAAC
1 TTGAACATCAACATC-ATCAAC
**
9443937 TTGAGTATCAACATCATCAAC
1 TTGAACATCAACATCATCAAC
9443958 TTGAA
1 TTGAA
9443963 GAATAAAAGG
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 20 0.95
22 1 0.05
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (21 bp):
TTGAACATCAACATCATCAAC
Found at i:9461692 original size:16 final size:16
Alignment explanation
Indices: 9461671--9461717 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
9461661 AGCTAACTTC
9461671 AGAATAAAACATAAAA
1 AGAATAAAACATAAAA
* *
9461687 AGAAT-AAGCACAAAA
1 AGAATAAAACATAAAA
9461702 AGACA-AAAACATAAAA
1 AGA-ATAAAACATAAAA
9461718 CCAATGTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
15 11 0.44
16 14 0.56
ACGTcount: A:0.72, C:0.11, G:0.09, T:0.09
Consensus pattern (16 bp):
AGAATAAAACATAAAA
Found at i:9463436 original size:17 final size:17
Alignment explanation
Indices: 9463414--9463446 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9463404 GCTGACGTAA
9463414 GAAAGACAAAAG-AAAAG
1 GAAAGA-AAAAGCAAAAG
9463431 GAAAGAAAAAGCAAAA
1 GAAAGAAAAAGCAAAA
9463447 AGGACTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.73, C:0.06, G:0.21, T:0.00
Consensus pattern (17 bp):
GAAAGAAAAAGCAAAAG
Found at i:9464175 original size:29 final size:28
Alignment explanation
Indices: 9464142--9464210 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 28
9464132 AATTTCATTT
*
9464142 AATTAAAAATTAATTGAGTTGAAATAAAA
1 AATTAAAAATTAATTGA-TTCAAATAAAA
* * *
9464171 AATTAAAAACTTGATTTATTCTAATAAAA
1 AATTAAAAA-TTAATTGATTCAAATAAAA
*
9464200 TATTAAAAATT
1 AATTAAAAATT
9464211 CAAATAATTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
28 2 0.06
29 26 0.76
30 6 0.18
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.36
Consensus pattern (28 bp):
AATTAAAAATTAATTGATTCAAATAAAA
Found at i:9466307 original size:30 final size:29
Alignment explanation
Indices: 9466271--9466350 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 29
9466261 ATTTCGTCTA
*
9466271 ATTAAAAATTTAATGGAGTTGA-AATAAAAT
1 ATTAAAAATTTAAT-GAATT-ATAATAAAAT
* * *
9466301 ATTAAAAACTTGATTAATTATAATAAAAT
1 ATTAAAAATTTAATGAATTATAATAAAAT
9466330 ATTAAAAATTTAAATG-ATTAT
1 ATTAAAAATTT-AATGAATTAT
9466351 CAAATTATCA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
28 1 0.02
29 26 0.63
30 14 0.34
ACGTcount: A:0.54, C:0.01, G:0.07, T:0.38
Consensus pattern (29 bp):
ATTAAAAATTTAATGAATTATAATAAAAT
Found at i:9467837 original size:34 final size:34
Alignment explanation
Indices: 9467767--9467850 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 34
9467757 AGATTTCATT
* * *
9467767 AAAATAAATAATAAAATTAATTCTGATGATATTAA
1 AAAAT-AATAATAAAATTAATTATAATGATAATAA
*
9467802 AAAATAATAATAATAATT-ATTATAATTATAATAA
1 AAAATAATAATAA-AATTAATTATAATGATAATAA
*
9467836 AAAATTATAATAAAA
1 AAAATAATAATAAAA
9467851 ATTTAGACTA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
33 2 0.05
34 32 0.74
35 9 0.21
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (34 bp):
AAAATAATAATAAAATTAATTATAATGATAATAA
Found at i:9467853 original size:12 final size:13
Alignment explanation
Indices: 9467825--9467851 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9467815 TAATTATTAT
9467825 AATTATAATAAAA
1 AATTATAATAAAA
9467838 AATTATAATAAAA
1 AATTATAATAAAA
9467851 A
1 A
9467852 TTTAGACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AATTATAATAAAA
Found at i:9468728 original size:21 final size:22
Alignment explanation
Indices: 9468704--9468747 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
9468694 ACGTAAAAAA
* *
9468704 TATATATATTTTTA-TAAAATT
1 TATATACAATTTTATTAAAATT
9468725 TATATACAATTTTATTAAAATT
1 TATATACAATTTTATTAAAATT
9468747 T
1 T
9468748 TAAATCTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TATATACAATTTTATTAAAATT
Found at i:9469231 original size:30 final size:30
Alignment explanation
Indices: 9469170--9469265 Score: 102
Period size: 30 Copynumber: 3.2 Consensus size: 30
9469160 TGTTAAGAGC
** *
9469170 TTATTTAGGTATAAATTAAAGGATAAAAAT
1 TTATTTAAATATAAATTAAAAGATAAAAAT
** *
9469200 TTATTTAAATATAAATTAAAATTTAAGAAT
1 TTATTTAAATATAAATTAAAAGATAAAAAT
* * * *
9469230 TTATTTAAATCTAAATTAAGAGTTAAAAAC
1 TTATTTAAATATAAATTAAAAGATAAAAAT
9469260 TTATTT
1 TTATTT
9469266 GGATATAACA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 55 1.00
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (30 bp):
TTATTTAAATATAAATTAAAAGATAAAAAT
Found at i:9475985 original size:31 final size:31
Alignment explanation
Indices: 9475947--9476017 Score: 142
Period size: 31 Copynumber: 2.3 Consensus size: 31
9475937 TATATTTCTC
9475947 AATAAAAATATATTAATTTTAATTAATCTAA
1 AATAAAAATATATTAATTTTAATTAATCTAA
9475978 AATAAAAATATATTAATTTTAATTAATCTAA
1 AATAAAAATATATTAATTTTAATTAATCTAA
9476009 AATAAAAAT
1 AATAAAAAT
9476018 TTATATTACT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (31 bp):
AATAAAAATATATTAATTTTAATTAATCTAA
Found at i:9476039 original size:33 final size:31
Alignment explanation
Indices: 9475947--9476040 Score: 109
Period size: 31 Copynumber: 3.0 Consensus size: 31
9475937 TATATTTCTC
* *
9475947 AATAAAAATATATTAATTTTAATTAATCTAA
1 AATAAAAATATATTAATTATAATAAATCTAA
* *
9475978 AATAAAAATATATTAATTTTAATTAATCTAA
1 AATAAAAATATATTAATTATAATAAATCTAA
*
9476009 AATAAAAATTTATATTACTTAATAA-AAATCTA
1 AATAAAAA--TATATTAATT-ATAATAAATCTA
9476041 TATAATCAAT
Statistics
Matches: 57, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
31 39 0.68
33 15 0.26
34 3 0.05
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (31 bp):
AATAAAAATATATTAATTATAATAAATCTAA
Found at i:9476051 original size:19 final size:20
Alignment explanation
Indices: 9476009--9476051 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
9475999 ATTAATCTAA
* * *
9476009 AATAAAAATTTATATTACTT
1 AATAAAAATCTATATTAATC
9476029 AATAAAAATCTATA-TAATC
1 AATAAAAATCTATATTAATC
9476048 AATA
1 AATA
9476052 TATATAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (20 bp):
AATAAAAATCTATATTAATC
Found at i:9476468 original size:23 final size:26
Alignment explanation
Indices: 9476406--9476478 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 26
9476396 AAAAAAATGC
* *
9476406 AACTAAAACAATAATCAATTAAAAAAT
1 AACTAACACAAAAATCAATT-AAAAAT
*
9476433 AACTTACACAAAAATCAATTAAAAA-
1 AACTAACACAAAAATCAATTAAAAAT
9476458 AA-TAAC-CAAAACAT-AATTAAA
1 AACTAACACAAAA-ATCAATTAAA
9476479 TTTTTTTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
23 12 0.29
24 5 0.12
25 2 0.05
26 5 0.12
27 17 0.41
ACGTcount: A:0.66, C:0.14, G:0.00, T:0.21
Consensus pattern (26 bp):
AACTAACACAAAAATCAATTAAAAAT
Found at i:9480456 original size:2 final size:2
Alignment explanation
Indices: 9480449--9480485 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
9480439 TCCATTCAGC
*
9480449 TA TA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9480486 TTCCATTCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:9506316 original size:12 final size:11
Alignment explanation
Indices: 9506291--9506323 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 11
9506281 TTATAATATG
9506291 ATAAGA-TAAA
1 ATAAGATTAAA
9506301 ATAAGATTATAA
1 ATAAGATTA-AA
9506313 ATAAGATTAAA
1 ATAAGATTAAA
9506324 TTAAATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.29
11 4 0.19
12 11 0.52
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (11 bp):
ATAAGATTAAA
Found at i:9514759 original size:14 final size:15
Alignment explanation
Indices: 9514730--9514767 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
9514720 AAAAAATAAT
*
9514730 ATTAATAATTTTAAA
1 ATTAATAATCTTAAA
9514745 ATTAA-AATCTTAAA
1 ATTAATAATCTTAAA
*
9514759 ATTTATAAT
1 ATTAATAAT
9514768 TTTTACATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTAATAATCTTAAA
Found at i:9516267 original size:2 final size:2
Alignment explanation
Indices: 9516260--9516285 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9516250 GCACTACATT
9516260 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
9516286 ACATAATTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9519584 original size:69 final size:68
Alignment explanation
Indices: 9519454--9519593 Score: 183
Period size: 69 Copynumber: 2.0 Consensus size: 68
9519444 AGCAATATAG
* * * * *
9519454 TTGCATTCCATATTTAATAAATGTGTAATTGCATTCCATAATCAATAGAAATCAACGGAGCAATG
1 TTGCATTCCATAATCAATAAAAGTGTAACTGCAATCCATAATCAATAGAAATCAACGGAGCAATG
9519519 GAA
66 GAA
* *
9519522 TTGCATTCCATAATCAATAAACAGTGTAACTGCAATCTATAATCAATAGATATCAATC-GAGCAA
1 TTGCATTCCATAATCAATAAA-AGTGTAACTGCAATCCATAATCAATAGAAATCAA-CGGAGCAA
*
9519586 TGTAA
64 TGGAA
9519591 TTG
1 TTG
9519594 TATTAGATAG
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
68 19 0.31
69 42 0.68
70 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.31
Consensus pattern (68 bp):
TTGCATTCCATAATCAATAAAAGTGTAACTGCAATCCATAATCAATAGAAATCAACGGAGCAATG
GAA
Found at i:9519686 original size:29 final size:29
Alignment explanation
Indices: 9519644--9519781 Score: 131
Period size: 29 Copynumber: 4.8 Consensus size: 29
9519634 AACTAAGCAA
* *
9519644 TGTAATTGCATTCCATAATTAATGGATAG
1 TGTAATTGCATTCCATAATTAATAGACAG
*
9519673 TGTAATTGCATTCCATAATTAATACACAG
1 TGTAATTGCATTCCATAATTAATAGACAG
* * *
9519702 TGTAAGTGCATTCTATAATCAATAGACA-
1 TGTAATTGCATTCCATAATTAATAGACAG
* * * *
9519730 T-CAATCGTGCAAT--GTAATTAATAGATAG
1 TGTAAT--TGCATTCCATAATTAATAGACAG
*
9519758 TGTAATTGCATTCCATAATCAATA
1 TGTAATTGCATTCCATAATTAATA
9519782 AACATTAACC
Statistics
Matches: 86, Mismatches: 17, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
27 18 0.21
28 2 0.02
29 66 0.77
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.35
Consensus pattern (29 bp):
TGTAATTGCATTCCATAATTAATAGACAG
Found at i:9519804 original size:40 final size:40
Alignment explanation
Indices: 9519760--9519839 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
9519750 ATAGATAGTG
* *
9519760 TAATTGCATTCCATAATCAATAAACATTAACCAAACAATA
1 TAATTACATTCCATAATCAATAAACATCAACCAAACAATA
* * * *
9519800 TAATTACATTCCATAATTAATAGATATCAACCAAGCAATA
1 TAATTACATTCCATAATCAATAAACATCAACCAAACAATA
9519840 ATCTCATTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.49, C:0.19, G:0.04, T:0.29
Consensus pattern (40 bp):
TAATTACATTCCATAATCAATAAACATCAACCAAACAATA
Found at i:9519804 original size:56 final size:56
Alignment explanation
Indices: 9519687--9519805 Score: 139
Period size: 56 Copynumber: 2.1 Consensus size: 56
9519677 ATTGCATTCC
* * * ***
9519687 ATAATTAATACACAGTGTAAGTGCATTCTATAATCAATAGACATCAATCGTGCAAT
1 ATAATTAATACACAGTGTAAGTGCATTCCATAATCAATAAACATCAACCAAACAAT
* * * * *
9519743 GTAATTAATAGATAGTGTAATTGCATTCCATAATCAATAAACATTAACCAAACAAT
1 ATAATTAATACACAGTGTAAGTGCATTCCATAATCAATAAACATCAACCAAACAAT
9519799 ATAATTA
1 ATAATTA
9519806 CATTCCATAA
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (56 bp):
ATAATTAATACACAGTGTAAGTGCATTCCATAATCAATAAACATCAACCAAACAAT
Found at i:9524117 original size:14 final size:14
Alignment explanation
Indices: 9524098--9524142 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
9524088 TTTGAAATAA
9524098 AAAATTTAAATATT
1 AAAATTTAAATATT
*
9524112 AAAATTTAAATCTT
1 AAAATTTAAATATT
9524126 AAATATATTAAATATT
1 AAA-AT-TTAAATATT
9524142 A
1 A
9524143 TTTTGTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
14 16 0.59
15 2 0.07
16 9 0.33
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (14 bp):
AAAATTTAAATATT
Found at i:9524570 original size:22 final size:21
Alignment explanation
Indices: 9524531--9524577 Score: 67
Period size: 22 Copynumber: 2.2 Consensus size: 21
9524521 ATATAATTTT
9524531 TATATAAAATATAATATTAAA
1 TATATAAAATATAATATTAAA
* *
9524552 TATATAAATTATTAATATTATA
1 TATATAAAATA-TAATATTAAA
9524574 TATA
1 TATA
9524578 ATATAAAGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TATATAAAATATAATATTAAA
Found at i:9525060 original size:12 final size:12
Alignment explanation
Indices: 9525045--9525085 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
9525035 AAATTTTATA
9525045 TTATATTTATTT
1 TTATATTTATTT
*
9525057 TTATATTAATATT
1 TTATATTTAT-TT
*
9525070 TTAAATTTATTT
1 TTATATTTATTT
9525082 TTAT
1 TTAT
9525086 TCTCATCTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 14 0.58
13 10 0.42
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATATTTATTT
Found at i:9525208 original size:26 final size:28
Alignment explanation
Indices: 9525179--9525243 Score: 89
Period size: 29 Copynumber: 2.4 Consensus size: 28
9525169 ATTTTTATTT
*
9525179 TATATATTTAGATA-ATTTTTT-ATAAA
1 TATATATTAAGATATATTTTTTAATAAA
9525205 TATATATTAAGATATATTTTTTCAATAAA
1 TATATATTAAGATATATTTTTT-AATAAA
*
9525234 AATATATTAA
1 TATATATTAA
9525244 TTTGAATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 13 0.38
27 7 0.21
29 14 0.41
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (28 bp):
TATATATTAAGATATATTTTTTAATAAA
Found at i:9525287 original size:20 final size:19
Alignment explanation
Indices: 9525258--9525295 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
9525248 AATTATGTAA
*
9525258 AATAATAATTTATATTATTT
1 AATAAAAATTTAT-TTATTT
9525278 AATAAAAATTTATTTATT
1 AATAAAAATTTATTTATT
9525296 ACATATATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
AATAAAAATTTATTTATTT
Found at i:9530552 original size:15 final size:15
Alignment explanation
Indices: 9530524--9530556 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
9530514 TTTTATTAAA
9530524 ATTTTAAATCTTATT
1 ATTTTAAATCTTATT
9530539 ATTTTCAAAT-TTATT
1 ATTTT-AAATCTTATT
9530554 ATT
1 ATT
9530557 CATATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTTTAAATCTTATT
Found at i:9532654 original size:477 final size:473
Alignment explanation
Indices: 9531500--9532917 Score: 1962
Period size: 477 Copynumber: 3.0 Consensus size: 473
9531490 ATAAAGTGTA
* * *
9531500 ATTTATTAATTTTAATGAATGATTACGAATCATATTTTAAGATTATAAATTAAATAAAAATATCA
1 ATTTATTAATTTTAATAAATGATCACGAATAATATTTTAAGATTATAAATTAAA-AAAAATATCA
* *
9531565 TGAATAT-AAAAAATTTGTTTATGTTTAATTCATTTTTATTTGAAATATAAATAAATAGAATATT
65 TGAATATAAAAAAATTTATTTATGTTTAGTTCATTTTTATTTGAAATATAAATAAATAGAATATT
* *
9531629 CGATGAATAATTTATGAATATATTTATTTTTTATTTGTTTATTAAAATTAAAAACAATCACAAAT
130 CGATGAATAATTTATGAATATATTTATTTTTTATTCGTTTATTAAAATTAAAAACAATCAAAAAT
* * *
9531694 AATATTTTAGAATTCGTCAATTAAATAAACAATATTTGACTCAAAATTGTTGGTTTATTGCTTGT
195 AATATTTTAAAATTCATTAATTAAATAAACAATATTTGACTCAAAATTGTTGGTTTATTGCTTGT
*
9531759 AAATAAAC--T-------TATA-G-------CTTTGATATGGAGAATCTTTAGAAAAATAAAAGT
260 AAATAAACTATAGCAAGCTATATGTTTTCACCTTTGATATAGAGAATCTTTAGAAAAATAAAAGT
** *
9531807 AAAAACTTTAAGGAAGCTTCTCCAATGAAAACT-AAAGGAGGTAGACCAAATATAATTCAAGTGT
325 AAAAACTTTAAGGAAGCTTCTCCTTTGAAAACTAAAAAG-GGTAGACCAAATATAATTCAAGTGT
* * *
9531871 GATAATAATAAAGGTAAAGACAGGTTTGTAGCTAAAGCG-TTT-----T-AGG-AAATAGGTTTG
389 GATAATAATAAAGTTAAAGACAGGTTTGTAGCTAAAACGTTTTAAGAATAAGGTAAATAGATTTG
9531928 ATTTTTGTTTATTTATATTT
454 ATTTTTGTTTATTTATATTT
* ** * *
9531948 A--T-TTAATTTTAATAAACGATCATAAATAATATTTTAAGATTGTAAATTAAAACAAACTATCA
1 ATTTATTAATTTTAATAAATGATCACGAATAATATTTTAAGATTATAAATTAAAA-AAAATATCA
* * * * * **
9532010 TGAATATAAAAAAATTTATCTATATTTTGTTCGTTTTTATTTGAAATACAAGCAAATAGAATATT
65 TGAATATAAAAAAATTTATTTATGTTTAGTTCATTTTTATTTGAAATATAAATAAATAGAATATT
* * * * *
9532075 CGACGAATAATTTATGAATATATTTACTTTTTATTCATTTATTAAAATTAAAAACAATTATAAAT
130 CGATGAATAATTTATGAATATATTTATTTTTTATTCGTTTATTAAAATTAAAAACAATCAAAAAT
*
9532140 AATATTTTAAAATTTATTAATTAAATAAACAATATTTGACTCAAAATTGTTGGTTTATTGCTTGT
195 AATATTTTAAAATTCATTAATTAAATAAACAATATTTGACTCAAAATTGTTGGTTTATTGCTTGT
*
9532205 AAATAAACTATTAGCAAGCTATATGTTTTCACCTTTGATATAAAGAATCTTTAGAAAAATAAAAG
260 AAATAAACTA-TAGCAAGCTATATGTTTTCACCTTTGATATAGAGAATCTTTAGAAAAATAAAAG
* * *
9532270 TGAAAACTTTAAGGAAGCTTCTCCTTTGAAAACTAAAAAGGGTAGTCCAAATATAACTCAAGTGT
324 TAAAAACTTTAAGGAAGCTTCTCCTTTGAAAACTAAAAAGGGTAGACCAAATATAATTCAAGTGT
* * *
9532335 GATAATAATAAAGTTAAGGACAGGTTTGCAGCTAAAACGTTTTAAGAATAGAGTGTAAATAGTTT
389 GATAATAATAAAGTTAAAGACAGGTTTGTAGCTAAAACGTTTTAAGAATA-AG-GTAAATAGATT
9532400 TGATTTTTGTTTATTTATATTT
452 TGATTTTTGTTTATTTATATTT
* * *
9532422 ATTTATTAATTTTAACAAATGATCACGATTAATATTTTAAAATTATAAATTAAACAAAAATATCA
1 ATTTATTAATTTTAATAAATGATCACGAATAATATTTTAAGATTATAAATTAAA-AAAAATATCA
* * * *
9532487 CGAATATAAAAAAATTTATTTATGTTTCGTTCATTTTTATTTTAAATATAAATAAATAAAATATT
65 TGAATATAAAAAAATTTATTTATGTTTAGTTCATTTTTATTTGAAATATAAATAAATAGAATATT
* * *
9532552 CAATGAATAATTTATGAAAATATTTATTTTTTATTCGTTTATTAAAATTAAAAATAATCAAAAAT
130 CGATGAATAATTTATGAATATATTTATTTTTTATTCGTTTATTAAAATTAAAAACAATCAAAAAT
*
9532617 AATATTTTAAAATTCATTAATTAAATAAACAATATTTGACTCAAAATTATTGGTTTATTGCTTGT
195 AATATTTTAAAATTCATTAATTAAATAAACAATATTTGACTCAAAATTGTTGGTTTATTGCTTGT
*
9532682 AAATAAACTACTAGCAAGCTATATGTTTTCACCTTTGATATCGAGAATCTTTAGAAAAATAAAAG
260 AAATAAACTA-TAGCAAGCTATATGTTTTCACCTTTGATATAGAGAATCTTTAGAAAAATAAAAG
*
9532747 TAAAAACTTTAAGGAAGCTTCTCCTTTGAAAACTTAAAAA-GGTAGACTAAATATAATTCAAGTG
324 TAAAAACTTTAAGGAAGCTTCTCCTTTGAAAAC-TAAAAAGGGTAGACCAAATATAATTCAAGTG
* * * ** * *
9532811 TCATAATCATAAAGTTAAAGACAGATTTGTTTCTAAAACTTTTTAAGAATAAAGGGTAAACAGAT
388 TGATAATAATAAAGTTAAAGACAGGTTTGTAGCTAAAACGTTTTAAGAAT-AA-GGTAAATAGAT
9532876 TTGATTTTTGTTTATTTATATTT
451 TTGATTTTTGTTTATTTATATTT
9532899 ATTTATTAATTTTAATAAA
1 ATTTATTAATTTTAATAAA
9532918 CTATCATGAA
Statistics
Matches: 846, Mismatches: 86, Indels: 47
0.86 0.09 0.05
Matches are distributed among these distances:
444 1 0.00
445 57 0.07
446 177 0.21
448 1 0.00
449 1 0.00
456 4 0.00
457 1 0.00
464 120 0.14
465 7 0.01
470 1 0.00
472 2 0.00
473 1 0.00
474 31 0.04
476 1 0.00
477 432 0.51
478 9 0.01
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.39
Consensus pattern (473 bp):
ATTTATTAATTTTAATAAATGATCACGAATAATATTTTAAGATTATAAATTAAAAAAAATATCAT
GAATATAAAAAAATTTATTTATGTTTAGTTCATTTTTATTTGAAATATAAATAAATAGAATATTC
GATGAATAATTTATGAATATATTTATTTTTTATTCGTTTATTAAAATTAAAAACAATCAAAAATA
ATATTTTAAAATTCATTAATTAAATAAACAATATTTGACTCAAAATTGTTGGTTTATTGCTTGTA
AATAAACTATAGCAAGCTATATGTTTTCACCTTTGATATAGAGAATCTTTAGAAAAATAAAAGTA
AAAACTTTAAGGAAGCTTCTCCTTTGAAAACTAAAAAGGGTAGACCAAATATAATTCAAGTGTGA
TAATAATAAAGTTAAAGACAGGTTTGTAGCTAAAACGTTTTAAGAATAAGGTAAATAGATTTGAT
TTTTGTTTATTTATATTT
Found at i:9533363 original size:434 final size:437
Alignment explanation
Indices: 9532482--9533351 Score: 1310
Period size: 434 Copynumber: 2.0 Consensus size: 437
9532472 TAAACAAAAA
* *
9532482 TATCACGAATATAAAAAAATTTATTTATGTTTCGTTCATTTTTATTTTAAATATAAATAAATAAA
1 TATCATGAATATAAAAAAATTTATTTATGTTTCGTTCATTTTTATTTGAAATATAAATAAATAAA
* * *
9532547 ATATTCAATGAATAATTTATGAAAATATTTATTTTTTATTCGTTTATTAAAATTAAAAATAATCA
66 ATATTCAATAAATAATTTATGAAAATATTCATTTTTTATTCATTTATTAAAATTAAAAATAATCA
* *
9532612 AAAATAATATTTTAAAATTCATTAATTAAATAAACAATATTTGACTCAAAATTATTGGTTTATTG
131 AAAATAATATTTTAAAATTCATTAATTAAATAAACAATATTTGACTCAAAATTATTAGTTCATTG
* *
9532677 CTTGTAAATAAACTACTAGCAAGCTATATGTTTTCACCTTTGATATCGAGAATCTTTAGAAAAAT
196 CTTGTAAATAAACTACTAGCAAGATATATGCTTTCACCTTTGATATCGAGAATCTTTAGAAAAAT
* * *
9532742 AAAAGTAAAAACTTTAAGGAAGCTTCTCCTTTGAAAACTTAAAAAGGTAGACTAAATATAATTCA
261 AAAAGTAAAAACTTTAAGGAAGCTTCTCCTTTGAAAACTAAAAAAGGTAGACCAAATATAATTAA
* * ** * *
9532807 AGTGTCATAATCATAAAGTTAAAGACAGATTTGTTTCTAAAACTTTTTAAGAATAAAGGGTAAAC
326 AGTGTCATAATAACAAAGTTAAAGACAGATTTGTAGCTAAAACGTTTTAAGAATAAAGGGTAAAA
*
9532872 AGATTTGATTTTTGTTTATTTATATTTATTTATTAATTTTAATAAAC
391 AGATTCGATTTTTGTTTATTTATATTTATTTATTAATTTTAATAAAC
* *
9532919 TATCATGAATAT-AGAAAATTTCATTTTTGTTTCGTT-AGTTTTTATTTGAAATATAAATAAATA
1 TATCATGAATATAAAAAAATTT-ATTTATGTTTCGTTCA-TTTTTATTTGAAATATAAATAAATA
* *
9532982 GAATATTCGATAAATAATTTAT-AAATATATTCA-TTTTTATTCATTTATTAAAA-TAAAAA-AA
64 AAATATTCAATAAATAATTTATGAAA-ATATTCATTTTTTATTCATTTATTAAAATTAAAAATAA
* *
9533043 TCACAAATAATATTTTAAAATTTC-TTAATTAAATAAACAATATTTGACTCAAAATTGTTAGTTC
128 TCAAAAATAATATTTTAAAA-TTCATTAATTAAATAAACAATATTTGACTCAAAATTATTAGTTC
* * *
9533107 ATTGCTTGTAAATAAACTACTAGCAATATGTATGCTTTCACCTTTGATATGGAGAATCTTTAGAA
192 ATTGCTTGTAAATAAACTACTAGCAAGATATATGCTTTCACCTTTGATATCGAGAATCTTTAGAA
*
9533172 AAATAAAAGTAAAAACTTTAAGGAAGCTTCTCCTTTGAAAAC-AAAAGAAGGTAGTCCAAATATA
257 AAATAAAAGTAAAAACTTTAAGGAAGCTTCTCCTTTGAAAACTAAAA-AAGGTAGACCAAATATA
* * *
9533236 ATTAAAGTGTGATAATAACAAAGTTAAAGACA-AGTTTGTAGCTAAAACGTTTTAAGAATAGAGT
321 ATTAAAGTGTCATAATAACAAAGTTAAAGACAGA-TTTGTAGCTAAAACGTTTTAAGAATAAAGG
*
9533300 GTAAAGAAGA-TCGATTTTTGTTTCTTTATATTTATTTATTAATTTTAATAAA
385 GTAAA-AAGATTCGATTTTTGTTTATTTATATTTATTTATTAATTTTAATAAA
9533352 TGATTATGAA
Statistics
Matches: 393, Mismatches: 33, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
433 4 0.01
434 273 0.69
435 12 0.03
436 31 0.08
437 73 0.19
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.39
Consensus pattern (437 bp):
TATCATGAATATAAAAAAATTTATTTATGTTTCGTTCATTTTTATTTGAAATATAAATAAATAAA
ATATTCAATAAATAATTTATGAAAATATTCATTTTTTATTCATTTATTAAAATTAAAAATAATCA
AAAATAATATTTTAAAATTCATTAATTAAATAAACAATATTTGACTCAAAATTATTAGTTCATTG
CTTGTAAATAAACTACTAGCAAGATATATGCTTTCACCTTTGATATCGAGAATCTTTAGAAAAAT
AAAAGTAAAAACTTTAAGGAAGCTTCTCCTTTGAAAACTAAAAAAGGTAGACCAAATATAATTAA
AGTGTCATAATAACAAAGTTAAAGACAGATTTGTAGCTAAAACGTTTTAAGAATAAAGGGTAAAA
AGATTCGATTTTTGTTTATTTATATTTATTTATTAATTTTAATAAAC
Done.