Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 59 of 77
Found at i:11802893 original size:34 final size:34
Alignment explanation
Indices: 11802847--11802936 Score: 108
Period size: 34 Copynumber: 2.6 Consensus size: 34
11802837 TTTCAATTTT
* *
11802847 AAGTTTTCAAATTTGTAAATTTACAAAATTTTAA
1 AAGTCTTCAAATTTGTAAATTTACAAAATATTAA
* * *
11802881 AAGTCTTCAAATTTGTACATTTAGAAACTATTAA
1 AAGTCTTCAAATTTGTAAATTTACAAAATATTAA
* * *
11802915 AAATCTCCAAATTTATAAATTT
1 AAGTCTTCAAATTTGTAAATTT
11802937 TGAAGTTTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 47 1.00
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.41
Consensus pattern (34 bp):
AAGTCTTCAAATTTGTAAATTTACAAAATATTAA
Found at i:11802949 original size:34 final size:34
Alignment explanation
Indices: 11802854--11802984 Score: 100
Period size: 34 Copynumber: 3.9 Consensus size: 34
11802844 TTTAAGTTTT
* * * * *
11802854 CAAATTTGTAAATTTACAAAATTTTAAAAGTCTT
1 CAAATTTATAAATTTAGAAACTTTTAAAAATCTC
* * *
11802888 CAAATTTGTACATTTAGAAACTATTAAAAATCTC
1 CAAATTTATAAATTTAGAAACTTTTAAAAATCTC
* ** * *
11802922 CAAATTTATAAATTTTGAAGTTTTTAAAAATTTT
1 CAAATTTATAAATTTAGAAACTTTTAAAAATCTC
* * * * *
11802956 CAGATTCATATATTCAAAAACTTTTAAAA
1 CAAATTTATAAATTTAGAAACTTTTAAAA
11802985 TTTTTTGCTT
Statistics
Matches: 75, Mismatches: 22, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
34 75 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.40
Consensus pattern (34 bp):
CAAATTTATAAATTTAGAAACTTTTAAAAATCTC
Found at i:11803281 original size:16 final size:15
Alignment explanation
Indices: 11803260--11803294 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
11803250 TAAAATAAGT
11803260 AAATAATTTTATTTA
1 AAATAATTTTATTTA
*
11803275 CAAATAATTTTTTTTA
1 -AAATAATTTTATTTA
11803291 AAAT
1 AAAT
11803295 TTAAATAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 4 0.22
16 14 0.78
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (15 bp):
AAATAATTTTATTTA
Found at i:11803563 original size:12 final size:12
Alignment explanation
Indices: 11803546--11803570 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11803536 TATAAACATA
11803546 TTAAGAAAAAAT
1 TTAAGAAAAAAT
11803558 TTAAGAAAAAAT
1 TTAAGAAAAAAT
11803570 T
1 T
11803571 AAATAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (12 bp):
TTAAGAAAAAAT
Found at i:11803943 original size:23 final size:21
Alignment explanation
Indices: 11803917--11803973 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 21
11803907 TTATTATTAT
11803917 TAAATACAAAATAAAAAATAAAA
1 TAAA-ACAAAA-AAAAAATAAAA
*
11803940 TAAAAACAATAAAAACAATAAAA
1 T-AAAACAA-AAAAAAAATAAAA
*
11803963 CAAAACAAAAA
1 TAAAACAAAAA
11803974 GAAAGAAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 3 0.10
22 7 0.23
23 15 0.50
24 5 0.17
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (21 bp):
TAAAACAAAAAAAAAATAAAA
Found at i:11803952 original size:9 final size:9
Alignment explanation
Indices: 11803938--11803962 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
11803928 TAAAAAATAA
11803938 AATAAAAAC
1 AATAAAAAC
11803947 AATAAAAAC
1 AATAAAAAC
11803956 AATAAAA
1 AATAAAA
11803963 CAAAACAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.80, C:0.08, G:0.00, T:0.12
Consensus pattern (9 bp):
AATAAAAAC
Found at i:11804921 original size:12 final size:12
Alignment explanation
Indices: 11804895--11804945 Score: 70
Period size: 12 Copynumber: 4.3 Consensus size: 12
11804885 ATTTTTTTGA
*
11804895 ATTTTTTT-TAG
1 ATTTTTTTATAT
11804906 ATTTTTTTATAT
1 ATTTTTTTATAT
11804918 ATTTTTTTATAT
1 ATTTTTTTATAT
11804930 ATTATTTTTA-AT
1 ATT-TTTTTATAT
11804942 ATTT
1 ATTT
11804946 ATGTATGTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
11 9 0.24
12 22 0.59
13 6 0.16
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (12 bp):
ATTTTTTTATAT
Found at i:11804924 original size:14 final size:15
Alignment explanation
Indices: 11804907--11804938 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
11804897 TTTTTTTAGA
11804907 TTTTTT-TATA-TAT
1 TTTTTTATATATTAT
11804920 TTTTTTATATATTAT
1 TTTTTTATATATTAT
11804935 TTTT
1 TTTT
11804939 AATATTTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 4 0.24
15 7 0.41
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTTATATATTAT
Found at i:11805652 original size:27 final size:25
Alignment explanation
Indices: 11805606--11805659 Score: 63
Period size: 27 Copynumber: 2.1 Consensus size: 25
11805596 ATATAATGCT
*
11805606 AATTTCAAAAAAATATATTTTTAAATA
1 AATTTCAAAAAAATA-A-ATTTAAATA
* *
11805633 AATTTCAAGAAATTAAATTTAAATA
1 AATTTCAAAAAAATAAATTTAAATA
11805658 AA
1 AA
11805660 AAATTGTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 10 0.42
26 1 0.04
27 13 0.54
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (25 bp):
AATTTCAAAAAAATAAATTTAAATA
Found at i:11808952 original size:33 final size:31
Alignment explanation
Indices: 11808876--11808952 Score: 73
Period size: 33 Copynumber: 2.3 Consensus size: 31
11808866 TTTGATATGC
* *
11808876 AAAAGCAAATGATTAGGTCTCAACAAGAGTTG
1 AAAAG-AAATGACTAGGACTCAACAAGAGTTG
* *
11808908 ATAGAACAAATGACTAGGACTCAAGAAGAGATTCG
1 A-A-AAGAAATGACTAGGACTCAACAAGAG-TT-G
11808943 AAAAGAAATG
1 AAAAGAAATG
11808953 GCTACAATGA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
32 1 0.03
33 28 0.78
34 5 0.14
35 2 0.06
ACGTcount: A:0.48, C:0.12, G:0.22, T:0.18
Consensus pattern (31 bp):
AAAAGAAATGACTAGGACTCAACAAGAGTTG
Found at i:11816494 original size:23 final size:23
Alignment explanation
Indices: 11816467--11816513 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
11816457 AAATATTTGT
11816467 TATATGATTACTTGTTCTCCTTG
1 TATATGATTACTTGTTCTCCTTG
11816490 TATATGATTACTTGTTCTCCTTG
1 TATATGATTACTTGTTCTCCTTG
11816513 T
1 T
11816514 TCTATCCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.17, C:0.17, G:0.13, T:0.53
Consensus pattern (23 bp):
TATATGATTACTTGTTCTCCTTG
Found at i:11817231 original size:40 final size:40
Alignment explanation
Indices: 11817136--11817653 Score: 282
Period size: 40 Copynumber: 13.2 Consensus size: 40
11817126 TTGCCTTTCG
* ** * *
11817136 GCTTTTCAACATTTAAAGTTTATTGCCTTTGGTTA-AAGGA
1 GCTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAA-GA
* * *
11817176 GCTTTT-GA-ATTTAAAGTTCGTTGTCTCTAGTCAGAAGA
1 GCTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAAGA
* * * *
11817214 GCTTTTCAATATTTAAAGTTTGTTGCTTTTGGTTA-AAGGA
1 GCTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAA-GA
* * * *
11817254 GCTTTT-GA-ATTTAAAGTTCGTTGTCTCTAGTCAGAGGA
1 GCTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAAGA
* * *
11817292 GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTA-AAGGA
1 GCTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAA-GA
** * * *
11817332 GCTTTTTGA-ATTTAAAGTTCATTACCTCTGGTCAGATGA
1 GCTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAAGA
** * * * *
11817371 GCTTTTCAATATTTAAAGTTTTTTTCCTTTGCTTA-AATGA
1 GCTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAA-GA
** * *
11817411 GCCTTTTGGATCA---AAAGTTCGTTGCCTCTAGTTAGAAGA
1 G-CTTTTCAAT-ATTTAAAGTTCGTTGCCTCTGGTCAGAAGA
* ** * * *
11817450 GCTTTTCAATATCTAAAGTTTTTTACCTTTGGTTA-AAGGA
1 GCTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAA-GA
** * *
11817490 GCCTTTTGGATCA---AAAGTTCGTTACCTCTGGTCAGAGGA
1 G-CTTTTCAAT-ATTTAAAGTTCGTTGCCTCTGGTCAGAAGA
* * * *
11817529 GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTAAAAGA
1 GCTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAAGA
* * * *
11817569 GCCTTTT-GA-ATTTAAAGTTTGTTGCCTTTGGTCAGATGA
1 G-CTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAAGA
* * * * * *
11817608 GTTTTTCAACATTTAAAGTTTGTTACCTTTGGTTA-AAGGA
1 GCTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAA-GA
11817648 GCTTTT
1 GCTTTT
11817654 GAATTTAACG
Statistics
Matches: 364, Mismatches: 86, Indels: 56
0.72 0.17 0.11
Matches are distributed among these distances:
37 2 0.01
38 72 0.20
39 110 0.30
40 159 0.44
41 19 0.05
42 2 0.01
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (40 bp):
GCTTTTCAATATTTAAAGTTCGTTGCCTCTGGTCAGAAGA
Found at i:11817387 original size:79 final size:78
Alignment explanation
Indices: 11817136--11817669 Score: 701
Period size: 79 Copynumber: 6.8 Consensus size: 78
11817126 TTGCCTTTCG
* * *
11817136 GCTTTTCAACATTTAAAGTTTATTGCCTTTGGTTAAAGGAGCTTTTGAATTTAAAGTTCGTTGTC
1 GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTGAATTTAAAGTTCGTTGCC
11817201 TCTAGTCAGAAGA
66 TCTAGTCAGAAGA
* *
11817214 GCTTTTCAATATTTAAAGTTTGTTGCTTTTGGTTAAAGGAGCTTTTGAATTTAAAGTTCGTTGTC
1 GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTGAATTTAAAGTTCGTTGCC
*
11817279 TCTAGTCAGAGGA
66 TCTAGTCAGAAGA
* *
11817292 GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTGAATTTAAAGTTCATTAC
1 GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGC-TTTTGAATTTAAAGTTCGTTGC
* *
11817357 CTCTGGTCAGATGA
65 CTCTAGTCAGAAGA
* * * * * **
11817371 GCTTTTCAATATTTAAAGTTTTTTTCCTTTGCTTAAATGAGCCTTTTGGATCAAAAGTTCGTTGC
1 GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTAAAGGAG-CTTTTGAATTTAAAGTTCGTTGC
*
11817436 CTCTAGTTAGAAGA
65 CTCTAGTCAGAAGA
* * * * ** *
11817450 GCTTTTCAATATCTAAAGTTTTTTACCTTTGGTTAAAGGAGCCTTTTGGATCAAAAGTTCGTTAC
1 GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTAAAGGAG-CTTTTGAATTTAAAGTTCGTTGC
* *
11817515 CTCTGGTCAGAGGA
65 CTCTAGTCAGAAGA
* *
11817529 GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTAAAAGAGCCTTTTGAATTTAAAGTTTGTTGC
1 GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTAAAGGAG-CTTTTGAATTTAAAGTTCGTTGC
* * *
11817594 CTTTGGTCAGATGA
65 CTCTAGTCAGAAGA
* * * *
11817608 GTTTTTCAACATTTAAAGTTTGTTACCTTTGGTTAAAGGAGCTTTTGAATTTAACGTT-GTTG
1 GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTGAATTTAAAGTTCGTTG
11817670 AGCCTCTGCT
Statistics
Matches: 408, Mismatches: 46, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
77 4 0.01
78 131 0.32
79 272 0.67
80 1 0.00
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (78 bp):
GCTTTTCAATATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTGAATTTAAAGTTCGTTGCC
TCTAGTCAGAAGA
Found at i:11817790 original size:48 final size:49
Alignment explanation
Indices: 11817658--11817793 Score: 188
Period size: 48 Copynumber: 2.8 Consensus size: 49
11817648 GCTTTTGAAT
* *
11817658 TTAACGTTGTTGAGCCTCTGCTGAGATGAGCATTTTTCAAGATAAAATT
1 TTAAAGTTGTTGAGCCTCTGCTGAGATGAGCATTTTTCAAGATAAAATC
* *
11817707 TTAAAGTTGTTGAGCCTCTGCTGAGA-GAACTTTTTTCAAGATAAAATC
1 TTAAAGTTGTTGAGCCTCTGCTGAGATGAGCATTTTTCAAGATAAAATC
**
11817755 TTAAAGTT-TTGAGCCTCTATTGAGATGAGTC-TTTTTCAA
1 TTAAAGTTGTTGAGCCTCTGCTGAGATGAG-CATTTTTCAA
11817794 AATTTAGATT
Statistics
Matches: 78, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
47 15 0.19
48 37 0.47
49 26 0.33
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (49 bp):
TTAAAGTTGTTGAGCCTCTGCTGAGATGAGCATTTTTCAAGATAAAATC
Found at i:11817890 original size:2 final size:2
Alignment explanation
Indices: 11817885--11817920 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
11817875 GGTTCAAAAA
*
11817885 AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11817921 CTCTTTGGAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11818126 original size:25 final size:24
Alignment explanation
Indices: 11818074--11818157 Score: 91
Period size: 25 Copynumber: 3.5 Consensus size: 24
11818064 TATTATTATT
**
11818074 AAATAAAAAATACAATAAAATACCA
1 AAATAAAAAATACAATAAAA-AAAA
*
11818099 AAATATAAAATACAATAAAAAATAA
1 AAATAAAAAATACAATAAAAAA-AA
*
11818124 AAACAAAAAA-ACAA-AACAAAAAA
1 AAATAAAAAATACAATAA-AAAAAA
11818147 AAATAAAAAAT
1 AAATAAAAAAT
11818158 GAAGATTGAT
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
23 13 0.26
24 9 0.18
25 28 0.56
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.13
Consensus pattern (24 bp):
AAATAAAAAATACAATAAAAAAAA
Found at i:11818133 original size:13 final size:13
Alignment explanation
Indices: 11818123--11818147 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11818113 ATAAAAAATA
11818123 AAAACAAAAAAAC
1 AAAACAAAAAAAC
11818136 AAAACAAAAAAA
1 AAAACAAAAAAA
11818148 AATAAAAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAACAAAAAAAC
Found at i:11819472 original size:32 final size:29
Alignment explanation
Indices: 11819399--11819473 Score: 78
Period size: 32 Copynumber: 2.4 Consensus size: 29
11819389 TCGAGATATC
11819399 TAAATTTTTTTATAAAAAATTAATAAAAAA
1 TAAATTTTTTTA-AAAAAATTAATAAAAAA
*** *
11819429 TAAAAAATTTTAAAACAATCATAATAAGAAAA
1 TAAATTTTTTTAAAAAAAT--TAATAA-AAAA
11819461 TAAATTTTTTTAA
1 TAAATTTTTTTAA
11819474 TTAAAAAAAT
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
29 6 0.17
30 9 0.26
31 6 0.17
32 14 0.40
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (29 bp):
TAAATTTTTTTAAAAAAATTAATAAAAAA
Found at i:11820471 original size:36 final size:36
Alignment explanation
Indices: 11820431--11820502 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
11820421 AGATTTTATA
*
11820431 TTGTTCTATATTTACTTTCATTTTATGTGAAAAATC
1 TTGTTCTATATTTACTTTCATTTCATGTGAAAAATC
*
11820467 TTGTTCTATATTTACTTTTATTTCATGTGAAAAATC
1 TTGTTCTATATTTACTTTCATTTCATGTGAAAAATC
11820503 ATTTTACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.28, C:0.11, G:0.08, T:0.53
Consensus pattern (36 bp):
TTGTTCTATATTTACTTTCATTTCATGTGAAAAATC
Found at i:11820754 original size:14 final size:15
Alignment explanation
Indices: 11820730--11820760 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
11820720 TTAATCACTT
11820730 TTAACAATTTTAAAA
1 TTAACAATTTTAAAA
11820745 TTAA-AATTTTAAAA
1 TTAACAATTTTAAAA
11820759 TT
1 TT
11820761 TTAAGAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAACAATTTTAAAA
Found at i:11820756 original size:8 final size:8
Alignment explanation
Indices: 11820728--11820764 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
11820718 AGTTAATCAC
11820728 TTTTAACAA
1 TTTTAA-AA
11820737 TTTTAAAA
1 TTTTAAAA
11820745 --TTAAAA
1 TTTTAAAA
11820751 TTTTAAAA
1 TTTTAAAA
11820759 TTTTAA
1 TTTTAA
11820765 GAAGTTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
6 6 0.23
8 14 0.54
9 6 0.23
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (8 bp):
TTTTAAAA
Found at i:11821237 original size:14 final size:14
Alignment explanation
Indices: 11821218--11821244 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11821208 ATTAAATTTT
11821218 CTGAATTTGTAAAG
1 CTGAATTTGTAAAG
11821232 CTGAATTTGTAAA
1 CTGAATTTGTAAA
11821245 ACAAGTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (14 bp):
CTGAATTTGTAAAG
Found at i:11822314 original size:28 final size:27
Alignment explanation
Indices: 11822274--11822326 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
11822264 CATATACGAT
* *
11822274 TAGAATTCCTTGCAGGCTTGGAAAAGCA
1 TAGAAATCCTTGCAAGCTT-GAAAAGCA
*
11822302 TAGAAATCTTTGCAAGCTTGAAAAG
1 TAGAAATCCTTGCAAGCTTGAAAAG
11822327 GTACAAGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 6 0.27
28 16 0.73
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (27 bp):
TAGAAATCCTTGCAAGCTTGAAAAGCA
Found at i:11825852 original size:12 final size:12
Alignment explanation
Indices: 11825835--11825863 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
11825825 TCTCCGCAAA
11825835 TTTTTTT-TTAT
1 TTTTTTTATTAT
11825846 TTTTTTTATTAT
1 TTTTTTTATTAT
11825858 TTTTTT
1 TTTTTT
11825864 GCAAATCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 7 0.41
12 10 0.59
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTTATTAT
Found at i:11826293 original size:168 final size:168
Alignment explanation
Indices: 11826006--11826318 Score: 511
Period size: 168 Copynumber: 1.9 Consensus size: 168
11825996 TTAAACACTC
* *
11826006 CAGAAGGAACCTTGAATATTTGCTGCTTTTCCATCCATGATCTCTTCTTTCTGGGTACTTTAACA
1 CAGAAGGAACCTTGAATATTCGCTGCTTTCCCATCCATGATCTCTTCTTTCTGGGTACTTTAACA
* *
11826071 ACGTTGGCAAAGACTCCAACACCTAATTTGCTGTTGGAATCTCCCATGACGTCTCTTTTTCTGCT
66 ACGTTGGCAAAGACTCCAAAACCTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTTCTGCT
*
11826136 TTTATCACCCTCAACGTCAAAAACTC-GTTTCTGAGACT
131 TTTATCACCCTCAACGTCAAAAAC-CGGCTTCTGAGACT
*
11826174 CAGAAGGAACCTTGAATATTCGCTGCTTTCCCATCCATGATATCTTCTTTCTGGGTACTTTAACA
1 CAGAAGGAACCTTGAATATTCGCTGCTTTCCCATCCATGATCTCTTCTTTCTGGGTACTTTAACA
* * * *
11826239 ACGTTGGCAAAGACTCGAAAACCTAATTTGCTGTTGTAATCTCCCTCAACGTCTCTTTTTCTGCT
66 ACGTTGGCAAAGACTCCAAAACCTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTTCTGCT
*
11826304 TTTATCACCCCCAAC
131 TTTATCACCCTCAAC
11826319 TGCTTTTATC
Statistics
Matches: 135, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
168 135 1.00
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (168 bp):
CAGAAGGAACCTTGAATATTCGCTGCTTTCCCATCCATGATCTCTTCTTTCTGGGTACTTTAACA
ACGTTGGCAAAGACTCCAAAACCTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTTCTGCT
TTTATCACCCTCAACGTCAAAAACCGGCTTCTGAGACT
Found at i:11826323 original size:19 final size:19
Alignment explanation
Indices: 11826299--11826337 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
11826289 GTCTCTTTTT
11826299 CTGCTTTTATCACCCCCAA
1 CTGCTTTTATCACCCCCAA
*
11826318 CTGCTTTTATCACCCTCAA
1 CTGCTTTTATCACCCCCAA
11826337 C
1 C
11826338 GTCAAAGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.21, C:0.41, G:0.05, T:0.33
Consensus pattern (19 bp):
CTGCTTTTATCACCCCCAA
Found at i:11826452 original size:187 final size:187
Alignment explanation
Indices: 11826131--11826505 Score: 642
Period size: 187 Copynumber: 2.0 Consensus size: 187
11826121 GTCTCTTTTT
*
11826131 CTGCTTTTATCACCCTCAACGTCAAAAACTCGTTTCTGAGACTCAGAAGGAACCTTGAATATTCG
1 CTGCTTTTATCACCCTCAACGTCAAAAACTCGTTTCTAAGACTCAGAAGGAACCTTGAATATTCG
* *
11826196 CTGCTTTCCCATCCATGATATCTTCTTTCTGGGTACTTTAACAACGTTGGCAAAGACTCGAAAAC
66 CTGCTTTCCCATCCATGATATCTTCTTTCTGGGCACTTTAACAACGTTGGCAAAGACTCCAAAAC
* *
11826261 CTAATTTGCTGTTGTAATCTCCCTCAACGTCTCTTTTTCTGCTTTTATCACCCCCAA
131 CTAATTTGCTGTTGGAATCTCCCACAACGTCTCTTTTTCTGCTTTTATCACCCCCAA
* * *
11826318 CTGCTTTTATCACCCTCAACGTCAAAGACTTGTTTCTAAGACTGAGAAGGAACCTTGAATATTCG
1 CTGCTTTTATCACCCTCAACGTCAAAAACTCGTTTCTAAGACTCAGAAGGAACCTTGAATATTCG
* *
11826383 CTGCTTTCCCATCCATGATCTCTTCTTTCTGGGCACTTTAACAACGTTGGCAAAGACTCCAACAC
66 CTGCTTTCCCATCCATGATATCTTCTTTCTGGGCACTTTAACAACGTTGGCAAAGACTCCAAAAC
* *
11826448 CTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTTCTGCTTTTATCACCCTCAA
131 CTAATTTGCTGTTGGAATCTCCCACAACGTCTCTTTTTCTGCTTTTATCACCCCCAA
11826505 C
1 C
11826506 GTCAAAAACC
Statistics
Matches: 176, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
187 176 1.00
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (187 bp):
CTGCTTTTATCACCCTCAACGTCAAAAACTCGTTTCTAAGACTCAGAAGGAACCTTGAATATTCG
CTGCTTTCCCATCCATGATATCTTCTTTCTGGGCACTTTAACAACGTTGGCAAAGACTCCAAAAC
CTAATTTGCTGTTGGAATCTCCCACAACGTCTCTTTTTCTGCTTTTATCACCCCCAA
Found at i:11826596 original size:168 final size:168
Alignment explanation
Indices: 11826318--11826936 Score: 956
Period size: 168 Copynumber: 3.7 Consensus size: 168
11826308 TCACCCCCAA
* ** * * *
11826318 CTGCTTTTATCACCCTCAACGTCAAAGACTTGTTTCTAAGACTGAGAAGGAACCTTGAATATTCG
1 CTGCTTTTATCACCCTCAACGTCAAAAACCGGCTTCTGAGACTCAGAAGGAACCTTGAATATTCG
*
11826383 CTGCTTTCCCATCCATGATCTCTTCTTTCTGGGCACTTTAACAACGTTGGCAAAGACTCCAACAC
66 CTGCTTTCCCATCCATGATCTCTTCTTTCTGGGCACGTTAACAACGTTGGCAAAGACTCCAACAC
11826448 CTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTT
131 CTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTT
11826486 CTGCTTTTATCACCCTCAACGTCAAAAACCGGCTTCTGAGACTCAGAAGGAACCTTGAATATTCG
1 CTGCTTTTATCACCCTCAACGTCAAAAACCGGCTTCTGAGACTCAGAAGGAACCTTGAATATTCG
* *
11826551 CTGCTTTCCCATCCAAGATCTCTTCTTTCTGGGCACTTTAACAACGTTGGCAAAGACTCCAACAC
66 CTGCTTTCCCATCCATGATCTCTTCTTTCTGGGCACGTTAACAACGTTGGCAAAGACTCCAACAC
11826616 CTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTT
131 CTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTT
11826654 CTGCTTTTATCACCCTCAACGTCAAAAACCGGCTTCTGAGACTCAGAAGGAACCTTGAATATTCG
1 CTGCTTTTATCACCCTCAACGTCAAAAACCGGCTTCTGAGACTCAGAAGGAACCTTGAATATTCG
* * * *
11826719 CTGCTTTCCCATCCATGATCTCTTCTTTCTGGGTACGTTAACAATGTTAGG-AAAGTCTCCAATA
66 CTGCTTTCCCATCCATGATCTCTTCTTTCTGGGCACGTTAACAACGTT-GGCAAAGACTCCAACA
* * *
11826783 CCTAATTCGCTGTTGGAATCTCCCACGACATCTCTTTCT
130 CCTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTT
* * * * * *
11826822 CTGCTTTT-TC-CTTCCTCAATGTCAAAACCCCGTTTCTCAGACTGAGAAGGAACCTTGAATATT
1 CTGCTTTTATCAC--CCTCAACGTCAAAAACCGGCTTCTGAGACTCAGAAGGAACCTTGAATATT
* * * *
11826885 GGCTGCTTTCTCATCCATGATCTCTTCTTTCTGGGTACGTTAACAATGTTGG
64 CGCTGCTTTCCCATCCATGATCTCTTCTTTCTGGGCACGTTAACAACGTTGG
11826937 AGAAGACCCC
Statistics
Matches: 424, Mismatches: 24, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
166 1 0.00
167 4 0.01
168 417 0.98
169 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.16, T:0.33
Consensus pattern (168 bp):
CTGCTTTTATCACCCTCAACGTCAAAAACCGGCTTCTGAGACTCAGAAGGAACCTTGAATATTCG
CTGCTTTCCCATCCATGATCTCTTCTTTCTGGGCACGTTAACAACGTTGGCAAAGACTCCAACAC
CTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTT
Found at i:11826658 original size:355 final size:335
Alignment explanation
Indices: 11826006--11826949 Score: 1311
Period size: 355 Copynumber: 2.8 Consensus size: 335
11825996 TTAAACACTC
* *
11826006 CAGAAGGAACCTTGAATATTTGCTGCTTTTCCATCCATGATCTCTTCTTTCTGGGTACTTTAACA
1 CAGAAGGAACCTTGAATATTCGCTGCTTTCCCATCCATGATCTCTTCTTTCTGGGTACTTTAACA
*
11826071 ACGTTGGCAAAGACTCCAACACCTAATTTGCTGTTGGAATCTCCCATGACGTCTCTTTTTCTGCT
66 ACGTTGGCAAAGACTCCAACACCTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTTCTGCT
11826136 TTTATCACCCTCAACGTCAAAAACTCGTTTCTGAGACTCAGAAGGAACCTTGAATATTCGCTGCT
131 TTTATCACCCTCAACGTCAAAAAC-CGTTTCTGAGACTCAGAAGGAACCTTGAATATTCGCTGCT
* *
11826201 TTCCCATCCATGATATCTTCTTTCTGGGTACTTTAACAACGTTGGCAAAGACTCGAAAACCTAAT
195 TTCCCATCCATGATCTCTTCTTTCTGGGTACTTTAACAACGTTGGCAAAGACTCCAAAACCTAAT
* *
11826266 TTGCTGTTGTAATCTCCCTCAACGTCTCTTTTTCTGCTTTTATCACCCCCAACTGCTTTTATCAC
260 TTGCTGTTGGAATCTCCCACAACG--------TCT-CTTTT-T---------CTGCTTTTATCAC
* ** *
11826331 CCTCAACGTCAAAGACTTGTTTCTAAGACT
306 CCTCAACGTCAAAAACCGGCTTCTAAGACT
* *
11826361 GAGAAGGAACCTTGAATATTCGCTGCTTTCCCATCCATGATCTCTTCTTTCTGGGCACTTTAACA
1 CAGAAGGAACCTTGAATATTCGCTGCTTTCCCATCCATGATCTCTTCTTTCTGGGTACTTTAACA
11826426 ACGTTGGCAAAGACTCCAACACCTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTTCTGCT
66 ACGTTGGCAAAGACTCCAACACCTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTTCTGCT
*
11826491 TTTATCACCCTCAACGTCAAAAACCGGCTTCTGAGACTCAGAAGGAACCTTGAATATTCGCTGCT
131 TTTATCACCCTCAACGTCAAAAACC-GTTTCTGAGACTCAGAAGGAACCTTGAATATTCGCTGCT
* * *
11826556 TTCCCATCCAAGATCTCTTCTTTCTGGGCACTTTAACAACGTTGGCAAAGACTCCAACACCTAAT
195 TTCCCATCCATGATCTCTTCTTTCTGGGTACTTTAACAACGTTGGCAAAGACTCCAAAACCTAAT
*
11826621 TTGCTGTTGGAATCTCCCACGACGTCTCTTTTTCTGCTTTTATCACCCTCAACGTCAAAAACCGG
260 TTGCTGTTGGAATCTCCCACAACGTCTCTTTTTCTGCTTTTATCACCCTCAACGTCAAAAACCGG
*
11826686 CTTCTGAGACT
325 CTTCTAAGACT
*
11826697 CAGAAGGAACCTTGAATATTCGCTGCTTTCCCATCCATGATCTCTTCTTTCTGGGTACGTTAACA
1 CAGAAGGAACCTTGAATATTCGCTGCTTTCCCATCCATGATCTCTTCTTTCTGGGTACTTTAACA
* * * * * *
11826762 ATGTTAGG-AAAGTCTCCAATACCTAATTCGCTGTTGGAATCTCCCACGACATCTCTTTCTCTGC
66 ACGTT-GGCAAAGACTCCAACACCTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTTCTGC
* * * * *
11826826 TTTT-TC-CTTCCTCAATGTCAAAACCCCGTTTCTCAGACTGAGAAGGAACCTTGAATATTGGCT
130 TTTTATCAC--CCTCAACGTCAAAA-ACCGTTTCTGAGACTCAGAAGGAACCTTGAATATTCGCT
* * * *
11826889 GCTTTCTCATCCATGATCTCTTCTTTCTGGGTACGTTAACAATGTTGG-AGAAGACCCCAAA
192 GCTTTCCCATCCATGATCTCTTCTTTCTGGGTACTTTAACAACGTTGGCA-AAGACTCCAAA
11826950 GTACCCAACA
Statistics
Matches: 542, Mismatches: 41, Indels: 31
0.88 0.07 0.05
Matches are distributed among these distances:
334 1 0.00
335 3 0.01
336 256 0.47
337 4 0.01
345 1 0.00
346 5 0.01
347 3 0.01
354 1 0.00
355 268 0.49
ACGTcount: A:0.24, C:0.27, G:0.15, T:0.33
Consensus pattern (335 bp):
CAGAAGGAACCTTGAATATTCGCTGCTTTCCCATCCATGATCTCTTCTTTCTGGGTACTTTAACA
ACGTTGGCAAAGACTCCAACACCTAATTTGCTGTTGGAATCTCCCACGACGTCTCTTTTTCTGCT
TTTATCACCCTCAACGTCAAAAACCGTTTCTGAGACTCAGAAGGAACCTTGAATATTCGCTGCTT
TCCCATCCATGATCTCTTCTTTCTGGGTACTTTAACAACGTTGGCAAAGACTCCAAAACCTAATT
TGCTGTTGGAATCTCCCACAACGTCTCTTTTTCTGCTTTTATCACCCTCAACGTCAAAAACCGGC
TTCTAAGACT
Found at i:11828096 original size:17 final size:17
Alignment explanation
Indices: 11828076--11828108 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
11828066 TTAGGTTTCG
11828076 ATTCATGTTTCCAACTT
1 ATTCATGTTTCCAACTT
*
11828093 ATTCATTTTTCCAACT
1 ATTCATGTTTCCAACT
11828109 GTTCCTTCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.24, G:0.03, T:0.48
Consensus pattern (17 bp):
ATTCATGTTTCCAACTT
Found at i:11828155 original size:101 final size:102
Alignment explanation
Indices: 11827991--11828192 Score: 334
Period size: 101 Copynumber: 2.0 Consensus size: 102
11827981 TTAGGTTTCG
* * *
11827991 ATTCATTTTTCCAACTTTATCCCTCTTTCACATTCATTCTCTTCGTTCGCCTGTGTAAGTCGTTG
1 ATTCATTTTTCCAACTGTATCCCTCCTTCACATTCATTCTCTTCGTTCGCCGGTGTAAGTCGTTG
*
11828056 CTTATAAATGTTAGGTTTCGATTCATGTTTCCAACTT
66 CTTATAAATGTCAGGTTTCGATTCATGTTTCCAACTT
* *
11828093 ATTCATTTTTCCAACTGT-TCCTTCCTTCACATTCATTCTCTTCGTTCGCCGGTGTAATTCGTTG
1 ATTCATTTTTCCAACTGTATCCCTCCTTCACATTCATTCTCTTCGTTCGCCGGTGTAAGTCGTTG
*
11828157 CTTATAAATGTCAGGTTTCGATTCATTTTTCCAACT
66 CTTATAAATGTCAGGTTTCGATTCATGTTTCCAACT
11828193 AACATTATGC
Statistics
Matches: 93, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
101 76 0.82
102 17 0.18
ACGTcount: A:0.18, C:0.24, G:0.12, T:0.46
Consensus pattern (102 bp):
ATTCATTTTTCCAACTGTATCCCTCCTTCACATTCATTCTCTTCGTTCGCCGGTGTAAGTCGTTG
CTTATAAATGTCAGGTTTCGATTCATGTTTCCAACTT
Found at i:11828223 original size:25 final size:25
Alignment explanation
Indices: 11828186--11828234 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
11828176 GATTCATTTT
11828186 TCCAACTAACATTATGCAAGTATTA
1 TCCAACTAACATTATGCAAGTATTA
* *
11828211 TCCAAGTAGCATTATGCAAGTATT
1 TCCAACTAACATTATGCAAGTATT
11828235 CACACGGCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (25 bp):
TCCAACTAACATTATGCAAGTATTA
Found at i:11828447 original size:34 final size:34
Alignment explanation
Indices: 11828376--11828448 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 34
11828366 TTAATTTTCG
* *
11828376 AATTTGTAAATTTAAAAAATTTTAAAAGTCTTCA
1 AATTTGTAAATTTAAAAAATATTAAAAATCTTCA
* *
11828410 AATTTGTAAATTTAGAAACTATTAAAAATC-TCTA
1 AATTTGTAAATTTAAAAAATATTAAAAATCTTC-A
11828444 AATTT
1 AATTT
11828449 ATAATTTTGG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 2 0.06
34 32 0.94
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (34 bp):
AATTTGTAAATTTAAAAAATATTAAAAATCTTCA
Found at i:11829011 original size:2 final size:2
Alignment explanation
Indices: 11829004--11829033 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
11828994 TTTGTATAAG
11829004 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11829034 GTATCCATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11831375 original size:34 final size:33
Alignment explanation
Indices: 11831318--11831430 Score: 102
Period size: 33 Copynumber: 3.4 Consensus size: 33
11831308 AATTTTTTTA
** *
11831318 TTTTTAAGTTTTTGAATTTGTAAATTAAAAAAT
1 TTTTTAAAATTTTAAATTTGTAAATTAAAAAAT
*
11831351 TTTTTAAAATCTTTAAATTTGTAAATTTAGAAAA-
1 TTTTTAAAAT-TTTAAATTTGTAAA-TTAAAAAAT
* ** ** *
11831385 TTTATAAAATTTTGGATTTACAAATTTAAAAAT
1 TTTTTAAAATTTTAAATTTGTAAATTAAAAAAT
*
11831418 TTTTAAAAATTTT
1 TTTTTAAAATTTT
11831431 TGGATTTATA
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
32 6 0.09
33 29 0.45
34 22 0.34
35 7 0.11
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (33 bp):
TTTTTAAAATTTTAAATTTGTAAATTAAAAAAT
Found at i:11831437 original size:34 final size:33
Alignment explanation
Indices: 11831317--11831464 Score: 138
Period size: 34 Copynumber: 4.4 Consensus size: 33
11831307 AAATTTTTTT
* * * *
11831317 ATTTTT-AAGTTTTTGAATTTGTAAATTAAAAA
1 ATTTTTAAAATTTTTGGATTTATAAATTTAAAA
* ** *
11831349 ATTTTTTAAAATCTTTAAATTTGTAAATTTAGAAA
1 A-TTTTTAAAATTTTTGGATTTATAAATTTA-AAA
* *
11831384 ATTTATAAAA-TTTTGGATTTACAAATTTAAAA
1 ATTTTTAAAATTTTTGGATTTATAAATTTAAAA
* *
11831416 ATTTTTAAAAATTTTTGGATTTATATATCTAAAA
1 ATTTTT-AAAATTTTTGGATTTATAAATTTAAAA
11831450 AGTTTTTAAAATTTT
1 A-TTTTTAAAATTTT
11831465 CTGCTTCAAA
Statistics
Matches: 96, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
32 9 0.09
33 23 0.24
34 55 0.57
35 9 0.09
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (33 bp):
ATTTTTAAAATTTTTGGATTTATAAATTTAAAA
Found at i:11831460 original size:67 final size:67
Alignment explanation
Indices: 11831339--11831464 Score: 155
Period size: 67 Copynumber: 1.9 Consensus size: 67
11831329 TTGAATTTGT
* * *
11831339 AAATTAAAAAATTTTTTAAAATCTTTAAATTTGTAAATTTAGAAAATTTATAAAATTTTGGATTT
1 AAATTAAAAAATTTTTAAAAATCTTTAAATTTATAAATCTAGAAAATTTATAAAATTTTGGATTT
11831404 AC
66 AC
* * ** * *
11831406 AAATTTAAAAATTTTTAAAAATTTTTGGATTTATATATCTA-AAAAGTTTTTAAAATTTT
1 AAATTAAAAAATTTTTAAAAATCTTTAAATTTATAAATCTAGAAAA-TTTATAAAATTTT
11831465 CTGCTTCAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
66 4 0.08
67 45 0.92
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (67 bp):
AAATTAAAAAATTTTTAAAAATCTTTAAATTTATAAATCTAGAAAATTTATAAAATTTTGGATTT
AC
Found at i:11833563 original size:17 final size:17
Alignment explanation
Indices: 11833543--11833578 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
11833533 AATTAACATG
11833543 TAAAACAAAATTTTTTA
1 TAAAACAAAATTTTTTA
* *
11833560 TAAAATACAATTTTTTA
1 TAAAACAAAATTTTTTA
11833577 TA
1 TA
11833579 CTATAGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAAACAAAATTTTTTA
Found at i:11833828 original size:23 final size:23
Alignment explanation
Indices: 11833801--11833849 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
11833791 CATTTGAAGA
11833801 ATAACAAATACTTATTTTCTTAT
1 ATAACAAATACTTATTTTCTTAT
11833824 ATAACAAATACTTATTTTCTTAT
1 ATAACAAATACTTATTTTCTTAT
11833847 ATA
1 ATA
11833850 CAATGAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (23 bp):
ATAACAAATACTTATTTTCTTAT
Found at i:11836591 original size:31 final size:30
Alignment explanation
Indices: 11836535--11836611 Score: 102
Period size: 31 Copynumber: 2.6 Consensus size: 30
11836525 CTTTCTTGCA
* *
11836535 TTATT-ATTAATAAATCAAATAATATTATT
1 TTATTAATAAATAAATTAAATAATATTATT
*
11836564 TTATTAATAAATTAAATTAAATGATATTATT
1 TTATTAATAAA-TAAATTAAATAATATTATT
*
11836595 TTATTAATGAATAAATT
1 TTATTAATAAATAAATT
11836612 TTTTTAAAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
29 5 0.12
30 10 0.24
31 27 0.64
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (30 bp):
TTATTAATAAATAAATTAAATAATATTATT
Found at i:11836593 original size:26 final size:26
Alignment explanation
Indices: 11836536--11836594 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
11836526 TTTCTTGCAT
*
11836536 TATTATTAATAAATCAAATAATATTA
1 TATTATTAATAAATCAAATAATATGA
* *
11836562 TTTTATTAATAAATTAAATTAA-ATGA
1 TATTATTAATAAATCAAA-TAATATGA
11836588 TATTATT
1 TATTATT
11836595 TTATTAATGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (26 bp):
TATTATTAATAAATCAAATAATATGA
Found at i:11836676 original size:23 final size:23
Alignment explanation
Indices: 11836632--11836682 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
11836622 ATTAATTTTT
***
11836632 TATTTATTTATTTTTAAAATTAA
1 TATTTATTTATAAATAAAATTAA
* *
11836655 TATTTATTTATAAATAATATTAC
1 TATTTATTTATAAATAAAATTAA
11836678 TATTT
1 TATTT
11836683 TATTCATTGA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (23 bp):
TATTTATTTATAAATAAAATTAA
Found at i:11838739 original size:18 final size:18
Alignment explanation
Indices: 11838707--11838745 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
11838697 AAGGTGTGAA
*
11838707 AGAGAAAATAAAGAAGCG
1 AGAGAAAAGAAAGAAGCG
* *
11838725 AGAGAAAAGAGAGAAGGG
1 AGAGAAAAGAAAGAAGCG
11838743 AGA
1 AGA
11838746 ATTGATTGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.03, G:0.36, T:0.03
Consensus pattern (18 bp):
AGAGAAAAGAAAGAAGCG
Found at i:11840937 original size:23 final size:18
Alignment explanation
Indices: 11840892--11840928 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
11840882 TCCAATTACA
11840892 ACTAAGAGGTCCAAAACT
1 ACTAAGAGGTCCAAAACT
11840910 ACTAAGAGGTCCAAAACT
1 ACTAAGAGGTCCAAAACT
11840928 A
1 A
11840929 TACTTCTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.22, G:0.16, T:0.16
Consensus pattern (18 bp):
ACTAAGAGGTCCAAAACT
Found at i:11841283 original size:14 final size:14
Alignment explanation
Indices: 11841265--11841294 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
11841255 ATAATTTTTA
11841265 AAAAATATATATATG
1 AAAAA-ATATATATG
11841280 AAAAAATATATATG
1 AAAAAATATATATG
11841294 A
1 A
11841295 TTAAAATAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (14 bp):
AAAAAATATATATG
Found at i:11841478 original size:22 final size:25
Alignment explanation
Indices: 11841432--11841479 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 25
11841422 ACCTAAAATT
*
11841432 TTGTTTTCATTCGTAATTTTTGAAA
1 TTGTTTTCATTCGTAATCTTTGAAA
11841457 TTGTTTTCA-T-G-AATCTTTGAAA
1 TTGTTTTCATTCGTAATCTTTGAAA
11841479 T
1 T
11841480 AGAACTATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 11 0.50
23 1 0.05
24 1 0.05
25 9 0.41
ACGTcount: A:0.25, C:0.08, G:0.12, T:0.54
Consensus pattern (25 bp):
TTGTTTTCATTCGTAATCTTTGAAA
Found at i:11841953 original size:39 final size:39
Alignment explanation
Indices: 11841874--11841950 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 39
11841864 AAGTCTTCGA
*
11841874 ATGTTAATATTTTATTTGATTTGTGTAGAATTATATTTT
1 ATGTAAATATTTTATTTGATTTGTGTAGAATTATATTTT
* *
11841913 ATGTAAATATTTTA-TTGGTTTGTGTGGAATTATATTTT
1 ATGTAAATATTTTATTTGATTTGTGTAGAATTATATTTT
11841951 TATTTAATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 22 0.63
39 13 0.37
ACGTcount: A:0.27, C:0.00, G:0.16, T:0.57
Consensus pattern (39 bp):
ATGTAAATATTTTATTTGATTTGTGTAGAATTATATTTT
Found at i:11842890 original size:55 final size:55
Alignment explanation
Indices: 11842806--11842958 Score: 279
Period size: 55 Copynumber: 2.8 Consensus size: 55
11842796 TTAATTGGTT
*
11842806 TTAATTGATTTGACAGGATTGAAAGGCTCTATCGTTTTCCATACACATTCCCTGA
1 TTAATTGATTTGGCAGGATTGAAAGGCTCTATCGTTTTCCATACACATTCCCTGA
11842861 TTAATTGATTTGGCAGGATTGAAAGGCTCTATCGTTTTCCATACACATTCCCTGA
1 TTAATTGATTTGGCAGGATTGAAAGGCTCTATCGTTTTCCATACACATTCCCTGA
*
11842916 TTAATTTATTTGGCAGGATTTGAAAGGCTCTATCGTTTTCCAT
1 TTAATTGATTTGGCAGGA-TTGAAAGGCTCTATCGTTTTCCAT
11842959 CTTTCAACTG
Statistics
Matches: 95, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
55 71 0.75
56 24 0.25
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (55 bp):
TTAATTGATTTGGCAGGATTGAAAGGCTCTATCGTTTTCCATACACATTCCCTGA
Found at i:11845873 original size:33 final size:33
Alignment explanation
Indices: 11845831--11845899 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
11845821 CTATTTGTCA
*
11845831 CATAAGATGGTGAAAATAGTTGGGGCAAAATGG
1 CATAAGATGGTGAAAATAGTTAGGGCAAAATGG
11845864 CATAAGATGGTGAAAATAGTTAGGGCAAAATGG
1 CATAAGATGGTGAAAATAGTTAGGGCAAAATGG
11845897 CAT
1 CAT
11845900 GACCTTCACA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.07, G:0.30, T:0.22
Consensus pattern (33 bp):
CATAAGATGGTGAAAATAGTTAGGGCAAAATGG
Found at i:11852453 original size:3 final size:3
Alignment explanation
Indices: 11852445--11852479 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
11852435 TGGTTTTTAC
11852445 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
11852480 TTCTGAGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:11853729 original size:140 final size:138
Alignment explanation
Indices: 11853471--11853737 Score: 396
Period size: 140 Copynumber: 1.9 Consensus size: 138
11853461 TAAAATATCA
* *
11853471 TATCACCAACTAGTTAAAACAGGATTTACTTGGAAATAGTGGTGTTTAGGAGATGCTACCTTGGG
1 TATCACCAACTAGTTAAAACAGGATTTACTTGGAAATAGTGGTGTCTAGGAGATGCTACCTGGGG
*
11853536 TCCAACTGGCATATGATATCATCCGCAATAGAAATTTAATCCAGAGTTTTTGTACCAAATCAACC
66 TCCAACTGGCATATGATATCATCCGCAATAGAAATTTAAT-CAGACTTTTTGTACCAAATCAACC
11853601 TTTATCATG
130 TTTATCATG
* *
11853610 TATCACCCAA-TAGTTAAAACAGGATTTACTTGGAAA-ACCTTGGTGTCTAGGAGATGCTATCTG
1 TATCA-CCAACTAGTTAAAACAGGATTTACTTGGAAATA--GTGGTGTCTAGGAGATGCTACCTG
* *
11853673 GGGTCCAACTGGCATATGATATCATCTGCAATAGAAATTTAAT-TGACTATTGTTGTACCAAATC
63 GGGTCCAACTGGCATATGATATCATCCGCAATAGAAATTTAATCAGACT-TT-TTGTACCAAATC
11853737 A
126 A
11853738 GTCTTGATGA
Statistics
Matches: 116, Mismatches: 7, Indels: 9
0.88 0.05 0.07
Matches are distributed among these distances:
138 4 0.03
139 33 0.28
140 79 0.68
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (138 bp):
TATCACCAACTAGTTAAAACAGGATTTACTTGGAAATAGTGGTGTCTAGGAGATGCTACCTGGGG
TCCAACTGGCATATGATATCATCCGCAATAGAAATTTAATCAGACTTTTTGTACCAAATCAACCT
TTATCATG
Found at i:11854070 original size:151 final size:150
Alignment explanation
Indices: 11853798--11854099 Score: 412
Period size: 151 Copynumber: 2.0 Consensus size: 150
11853788 CATGAAAGGG
** ** *
11853798 CCATTGCTTGGATTTCATTTTTCACTTTTTTTTATGATATAGAGGGCTAGCCTATGAGATATTTG
1 CCATTGCTTGGATGGCATTTCCCACTTTTTTTTATGATATAGAGGGCTAGCCTATGAAATATTTG
* * * *
11853863 GTCCTTTTGGTGGATAACAAGTTTCAAGTGGATGAATGTTGGACTTTGATATGATAAGTCCT-GT
66 GTCCTTTTGGTGGATAACAAGTTTCAAGTGGATGAAGGTTGCACTTTGACATGATAAGTCCTAAT
*
11853927 AAATCATCACTCAGAGAAAT
131 AAATCATCACTCACAGAAAT
*
11853947 CCATTGCTTGGATGGCATTTCCCA-TTTTTTTACTAATGATATAGAGGGCTAGTCTATGAAATAT
1 CCATTGCTTGGATGGCATTTCCCACTTTTTTT--T-ATGATATAGAGGGCTAGCCTATGAAATAT
* * *
11854011 TTGGTCCTTTTGGTGGATGACAAGTTTCAA-TCGGATGAGGGTTGCACTTTGACATGATAAGTCT
63 TTGGTCCTTTTGGTGGATAACAAGTTTCAAGT-GGATGAAGGTTGCACTTTGACATGATAAGTCC
*
11854075 TAATGAATCATCACTCACAGAAAT
127 TAATAAATCATCACTCACAGAAAT
11854099 C
1 C
11854100 TATAAAGAGA
Statistics
Matches: 133, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
148 7 0.05
149 20 0.15
150 2 0.02
151 84 0.63
152 20 0.15
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (150 bp):
CCATTGCTTGGATGGCATTTCCCACTTTTTTTTATGATATAGAGGGCTAGCCTATGAAATATTTG
GTCCTTTTGGTGGATAACAAGTTTCAAGTGGATGAAGGTTGCACTTTGACATGATAAGTCCTAAT
AAATCATCACTCACAGAAAT
Found at i:11858430 original size:23 final size:23
Alignment explanation
Indices: 11858379--11858429 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
11858369 AATTTTAATC
11858379 ATTTTTAAAAAATAATATTTATT
1 ATTTTTAAAAAATAATATTTATT
* **
11858402 AATTTTAAAATTTAATATTTA-T
1 ATTTTTAAAAAATAATATTTATT
11858424 ATTTTT
1 ATTTTT
11858430 TTTTCAGACT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
22 6 0.25
23 18 0.75
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (23 bp):
ATTTTTAAAAAATAATATTTATT
Found at i:11859784 original size:17 final size:17
Alignment explanation
Indices: 11859746--11859784 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
11859736 CCACCATCTC
11859746 TTTTTTTTTCTTTTCTA
1 TTTTTTTTTCTTTTCTA
*
11859763 ATTTTTTTTCTTTT-T-
1 TTTTTTTTTCTTTTCTA
11859778 TTTTTTT
1 TTTTTTT
11859785 GGGGGGGGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 1 0.05
17 13 0.65
ACGTcount: A:0.05, C:0.08, G:0.00, T:0.87
Consensus pattern (17 bp):
TTTTTTTTTCTTTTCTA
Found at i:11860871 original size:104 final size:100
Alignment explanation
Indices: 11860762--11860954 Score: 334
Period size: 104 Copynumber: 1.9 Consensus size: 100
11860752 AAGAGAGCTT
11860762 GTTAAATTAAATTAATTTTTTGCTTATTGCAATTTTATTTTTAATATAATAACACATA-AAACAT
1 GTTAAATTAAATTAATTTTTTGCTTATTGCAATTTTA-----AATATAATAACACATACAAACAT
11860826 ATGTAGTAGGGCCTAACATGTACGTGGACAGCTTGTTTAA
61 ATGTAGTAGGGCCTAACATGTACGTGGACAGCTTGTTTAA
11860866 GTTAAATTAAATTAATTTTTTGCTTATTGCAATTTTAAATATAATAACACATACAAACATATGTA
1 GTTAAATTAAATTAATTTTTTGCTTATTGCAATTTTAAATATAATAACACATACAAACATATGTA
11860931 GTAGGGCCTAACATGTACGTGGAC
66 GTAGGGCCTAACATGTACGTGGAC
11860955 CTTTGTGTTT
Statistics
Matches: 88, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
99 16 0.18
100 35 0.40
104 37 0.42
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.38
Consensus pattern (100 bp):
GTTAAATTAAATTAATTTTTTGCTTATTGCAATTTTAAATATAATAACACATACAAACATATGTA
GTAGGGCCTAACATGTACGTGGACAGCTTGTTTAA
Found at i:11867150 original size:1 final size:1
Alignment explanation
Indices: 11867144--11867177 Score: 50
Period size: 1 Copynumber: 34.0 Consensus size: 1
11867134 AACTGTCTCC
* *
11867144 TTTTTTTGTTTTGTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
11867178 GTGTAAGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.06, T:0.94
Consensus pattern (1 bp):
T
Found at i:11869876 original size:23 final size:23
Alignment explanation
Indices: 11869850--11869893 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
11869840 TCATATATAT
*
11869850 ATATATATATAAA-TTTATTTTTG
1 ATATATAGA-AAATTTTATTTTTG
*
11869873 ATATGTAGAAAATTTTATTTT
1 ATATATAGAAAATTTTATTTT
11869894 GTATTTATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.55
Consensus pattern (23 bp):
ATATATAGAAAATTTTATTTTTG
Found at i:11869921 original size:28 final size:29
Alignment explanation
Indices: 11869873--11869927 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
11869863 TTTATTTTTG
* *
11869873 ATATGTAGAAAATTTTATTTTGTATTTAT
1 ATATGTAGAAAAATTAATTTTGTATTTAT
*
11869902 ATATGTA-AAAAATTAATTTTTTATTT
1 ATATGTAGAAAAATTAATTTTGTATTT
11869928 GTGATAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (29 bp):
ATATGTAGAAAAATTAATTTTGTATTTAT
Found at i:11869922 original size:29 final size:28
Alignment explanation
Indices: 11869863--11869927 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
11869853 TATATATAAA
* * *
11869863 TTTATTTTTGATATGTAGAAAATTTTATT
1 TTTATTTAT-ATATGTAAAAAATTATATT
11869892 TTGTATTTATATATGTAAAAAATTA-ATTT
1 TT-TATTTATATATGTAAAAAATTATA-TT
11869921 TTTATTT
1 TTTATTT
11869928 GTGATAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 6 0.19
29 19 0.61
30 6 0.19
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (28 bp):
TTTATTTATATATGTAAAAAATTATATT
Found at i:11870407 original size:20 final size:20
Alignment explanation
Indices: 11870356--11870407 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
11870346 TTTAAATTCG
*
11870356 ATTCAAATATTACTTAATCAA
1 ATTC-AATATTGCTTAATCAA
*
11870377 ATTTAATATTGCTTAATCAA
1 ATTCAATATTGCTTAATCAA
11870397 ATTCAATATTG
1 ATTCAATATTG
11870408 AGTTTAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 25 0.89
21 3 0.11
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (20 bp):
ATTCAATATTGCTTAATCAA
Found at i:11873950 original size:1 final size:1
Alignment explanation
Indices: 11873946--11873984 Score: 78
Period size: 1 Copynumber: 39.0 Consensus size: 1
11873936 GTAAAAATAG
11873946 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
11873985 CGAATTAGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:11874993 original size:11 final size:11
Alignment explanation
Indices: 11874973--11875013 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
11874963 TTCCAAGTTG
11874973 TCTTTCTTTTT
1 TCTTTCTTTTT
11874984 TCTTT-TTTTT
1 TCTTTCTTTTT
*
11874994 T-TTTCATTTT
1 TCTTTCTTTTT
*
11875004 GCTTTCTTTT
1 TCTTTCTTTT
11875014 AAAAGATTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 3 0.12
10 10 0.40
11 12 0.48
ACGTcount: A:0.02, C:0.15, G:0.02, T:0.80
Consensus pattern (11 bp):
TCTTTCTTTTT
Found at i:11875003 original size:20 final size:21
Alignment explanation
Indices: 11874975--11875013 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
11874965 CCAAGTTGTC
* *
11874975 TTTCTTTTTTCTTT-TTTTTT
1 TTTCATTTTGCTTTCTTTTTT
11874995 TTTCATTTTGCTTTCTTTT
1 TTTCATTTTGCTTTCTTTT
11875014 AAAAGATTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.03, C:0.13, G:0.03, T:0.82
Consensus pattern (21 bp):
TTTCATTTTGCTTTCTTTTTT
Found at i:11882979 original size:22 final size:22
Alignment explanation
Indices: 11882938--11882980 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
11882928 CTGTATATTT
** *
11882938 ATATTTGTATCTTTAGAATTAC
1 ATATTTGTATCCCTAAAATTAC
11882960 ATATTTGTATCCCTAAAATTA
1 ATATTTGTATCCCTAAAATTA
11882981 AGGACAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.47
Consensus pattern (22 bp):
ATATTTGTATCCCTAAAATTAC
Found at i:11887721 original size:24 final size:24
Alignment explanation
Indices: 11887693--11887741 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
11887683 GTAAGGAAAG
11887693 ATAGAATCAATGAGTGGAAACACA
1 ATAGAATCAATGAGTGGAAACACA
11887717 ATAGAATCAATGAGTGGAAACACA
1 ATAGAATCAATGAGTGGAAACACA
11887741 A
1 A
11887742 CAACCGCCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.12, G:0.20, T:0.16
Consensus pattern (24 bp):
ATAGAATCAATGAGTGGAAACACA
Found at i:11891565 original size:18 final size:18
Alignment explanation
Indices: 11891528--11891561 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11891518 TTAAATGAAA
*
11891528 TTATATATTTTTATTAAT
1 TTATATATTTTTATAAAT
11891546 TTATATATTTTT-TAAA
1 TTATATATTTTTATAAA
11891562 ATTTTATAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 3 0.20
18 12 0.80
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTATATATTTTTATAAAT
Found at i:11901993 original size:8 final size:9
Alignment explanation
Indices: 11901969--11901994 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
11901959 CCACATGTTT
11901969 TTCTTTTTC
1 TTCTTTTTC
11901978 TTCTTTTTC
1 TTCTTTTTC
11901987 TTCTTTTT
1 TTCTTTTT
11901995 TAATCTTCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (9 bp):
TTCTTTTTC
Found at i:11926580 original size:14 final size:14
Alignment explanation
Indices: 11926563--11926608 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 14
11926553 AAAATTAAAA
11926563 TAAATTATAAATAT
1 TAAATTATAAATAT
11926577 TAAAATT-TAAATAT
1 T-AAATTATAAATAT
11926591 TAAATATATTAAATAT
1 TAAAT-TA-TAAATAT
11926607 TA
1 TA
11926609 CTTTTGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 4 0.14
14 10 0.36
15 5 0.18
16 9 0.32
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TAAATTATAAATAT
Found at i:11926580 original size:19 final size:18
Alignment explanation
Indices: 11926540--11926582 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
11926530 GATATTTTTA
*
11926540 TAAAAAAAAATATAAAAT
1 TAAAATAAAATATAAAAT
*
11926558 TAAAATAAATTATAAATAT
1 TAAAATAAAATATAAA-AT
11926577 TAAAAT
1 TAAAAT
11926583 TTAAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAAATAAAATATAAAAT
Found at i:11926596 original size:32 final size:30
Alignment explanation
Indices: 11926546--11926608 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 30
11926536 TTTATAAAAA
11926546 AAAATATAAAATTAAAATAAATTATAAATATT
1 AAAATATAAAATTAAAATAAA-T-TAAATATT
* *
11926578 AAAATTTAAATATT-AAATATATTAAATATT
1 AAAATATAAA-ATTAAAATAAATTAAATATT
11926608 A
1 A
11926609 CTTTTGAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 9 0.32
31 1 0.04
32 15 0.54
33 3 0.11
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (30 bp):
AAAATATAAAATTAAAATAAATTAAATATT
Found at i:11928105 original size:11 final size:11
Alignment explanation
Indices: 11928091--11928142 Score: 68
Period size: 11 Copynumber: 4.5 Consensus size: 11
11928081 TAATTTTAAA
11928091 TTATATTATTT
1 TTATATTATTT
*
11928102 TTATATCATTT
1 TTATATTATTT
*
11928113 TTATATTTTTTAT
1 TTATA-TTATT-T
11928126 TTATATTATTT
1 TTATATTATTT
11928137 TTATAT
1 TTATAT
11928143 AATATTACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
11 22 0.63
12 7 0.20
13 6 0.17
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (11 bp):
TTATATTATTT
Found at i:11928163 original size:35 final size:35
Alignment explanation
Indices: 11928091--11928169 Score: 88
Period size: 35 Copynumber: 2.2 Consensus size: 35
11928081 TAATTTTAAA
* * * **
11928091 TTATATTATTTTTATATCATTTTTATATTTTTTAT
1 TTATATTATTTTTATATCAATATTATATATTGAAT
11928126 TTATATTATTTTTATAT-AATATTACTATATTGAAT
1 TTATATTATTTTTATATCAATATTA-TATATTGAAT
11928161 TTAATATTA
1 TT-ATATTA
11928170 ATATTCCTAC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
34 5 0.14
35 26 0.70
36 6 0.16
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (35 bp):
TTATATTATTTTTATATCAATATTATATATTGAAT
Found at i:11929380 original size:21 final size:20
Alignment explanation
Indices: 11929355--11929393 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
11929345 GTTTTTAAAG
11929355 TTATTAAAATTTAAAATTTGA
1 TTATTAAAA-TTAAAATTTGA
*
11929376 TTATTAACATTAAAATTT
1 TTATTAAAATTAAAATTT
11929394 TAATATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (20 bp):
TTATTAAAATTAAAATTTGA
Found at i:11929412 original size:27 final size:27
Alignment explanation
Indices: 11929357--11929414 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
11929347 TTTTAAAGTT
*
11929357 ATTAAAATTTAAAATTTGATTATTAAC
1 ATTAAAATTTAAAATTTGATTAATAAC
* *
11929384 ATTAAAATTTTAATATTTTATTAAT-AC
1 ATTAAAA-TTTAAAATTTGATTAATAAC
11929411 ATTA
1 ATTA
11929415 TGTGTATGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 13 0.48
28 14 0.52
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (27 bp):
ATTAAAATTTAAAATTTGATTAATAAC
Found at i:11929451 original size:21 final size:21
Alignment explanation
Indices: 11929427--11929477 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
11929417 TGTATGTTAA
11929427 TTTATTGTTTGAT-TTTGA-TTT
1 TTTATT-TTT-ATATTTGAGTTT
11929448 TTTATTTTTATATTTGAGTTT
1 TTTATTTTTATATTTGAGTTT
*
11929469 TTTTTTTTT
1 TTTATTTTT
11929478 TTTTTTGCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 2 0.07
20 8 0.30
21 17 0.63
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (21 bp):
TTTATTTTTATATTTGAGTTT
Found at i:11929469 original size:20 final size:20
Alignment explanation
Indices: 11929427--11929475 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
11929417 TGTATGTTAA
*
11929427 TTTATTGTTTGATTTTGATTT
1 TTTATT-TTTGATTTTGAGTT
11929448 TTTATTTTT-ATATTTGAGTT
1 TTTATTTTTGAT-TTTGAGTT
11929468 TTT-TTTTT
1 TTTATTTTT
11929476 TTTTTTTTGC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 7 0.27
20 13 0.50
21 6 0.23
ACGTcount: A:0.14, C:0.00, G:0.10, T:0.76
Consensus pattern (20 bp):
TTTATTTTTGATTTTGAGTT
Found at i:11930038 original size:18 final size:18
Alignment explanation
Indices: 11930017--11930051 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11930007 TTCAAATATT
*
11930017 TTAAAATTAAATAATTAA
1 TTAAAATAAAATAATTAA
*
11930035 TTAAAATAAAATTATTA
1 TTAAAATAAAATAATTA
11930052 TTTTAGGTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAAAATAAAATAATTAA
Found at i:11934455 original size:2 final size:2
Alignment explanation
Indices: 11934448--11934477 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
11934438 CTTTTTCATG
11934448 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11934478 ATTTTTAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11937513 original size:29 final size:26
Alignment explanation
Indices: 11937466--11937524 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 26
11937456 TATTTTGTAG
*
11937466 TTAA-ATAATTTTTTATAAAGATATA
1 TTAATATAATTTTTTATAAAAATATA
*
11937491 TTAATATATATTTTTTCAATAAAAATATC
1 TTAATATA-ATTTTTT--ATAAAAATATA
11937520 TTAAT
1 TTAAT
11937525 TTTAATTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 4 0.14
26 3 0.11
27 7 0.25
29 14 0.50
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (26 bp):
TTAATATAATTTTTTATAAAAATATA
Found at i:11940738 original size:30 final size:30
Alignment explanation
Indices: 11940704--11940775 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
11940694 TTTAAAATAT
11940704 AAAAAAATAAAAGTTTTA-GATATTC-AAAAA
1 AAAAAAATAAAAG-TTTAGGAT-TTCTAAAAA
* *
11940734 AAAAAAACATAAGTTTAGGATTTCTTAAAAA
1 AAAAAAATAAAAGTTTAGGATTTC-TAAAAA
*
11940765 AGAAAAATAAA
1 AAAAAAATAAA
11940776 GAAAATAACA
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
29 7 0.21
30 14 0.41
31 13 0.38
ACGTcount: A:0.62, C:0.04, G:0.08, T:0.25
Consensus pattern (30 bp):
AAAAAAATAAAAGTTTAGGATTTCTAAAAA
Found at i:11941752 original size:24 final size:25
Alignment explanation
Indices: 11941723--11941769 Score: 71
Period size: 24 Copynumber: 1.9 Consensus size: 25
11941713 TAGAATTAAA
11941723 ATTTAAAAA-TGTAAT-AAATAAAAT
1 ATTTAAAAAGT-TAATGAAATAAAAT
11941747 ATTTAAAAAGTTAATGAAATAAA
1 ATTTAAAAAGTTAATGAAATAAA
11941770 CTTATTTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (25 bp):
ATTTAAAAAGTTAATGAAATAAAAT
Found at i:11944298 original size:53 final size:53
Alignment explanation
Indices: 11944189--11944291 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 53
11944179 TTTGGAAAAT
*
11944189 TTTTTTTAATTTCTAAATTTTTCACCATTTGAACCTATTTAGAAAATTTTTCC
1 TTTTTTTAATTTCTAAATTTTTCACCATTTGAACCAATTTAGAAAATTTTTCC
* ***
11944242 TTTTTTT-ATTTCTAAATTTTTCACTATTTGGGTCAATTTAGAAAATTTTT
1 TTTTTTTAATTTCTAAATTTTTCACCATTTGAACCAATTTAGAAAATTTTT
11944292 TTCTTTTCTT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
52 38 0.84
53 7 0.16
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (53 bp):
TTTTTTTAATTTCTAAATTTTTCACCATTTGAACCAATTTAGAAAATTTTTCC
Found at i:11945047 original size:17 final size:17
Alignment explanation
Indices: 11945012--11945056 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
11945002 TTTCTTCAGA
*
11945012 TTCTC-CTTTTTCCCCT
1 TTCTCTCTTCTTCCCCT
*
11945028 TTCTCTCTTCTTCCCTT
1 TTCTCTCTTCTTCCCCT
11945045 TTCTCTCATTCT
1 TTCTCTC-TTCT
11945057 CTCTCTACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 5 0.20
17 16 0.64
18 4 0.16
ACGTcount: A:0.02, C:0.40, G:0.00, T:0.58
Consensus pattern (17 bp):
TTCTCTCTTCTTCCCCT
Found at i:11946263 original size:5 final size:5
Alignment explanation
Indices: 11946253--11946298 Score: 65
Period size: 5 Copynumber: 9.2 Consensus size: 5
11946243 AAATATTAAT
* * *
11946253 AAAGG AAAGG AAAGG AAAGG AAAGG AAAAG AGAGG AAAAG AAAGG A
1 AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG AAAGG A
11946299 TATATATATC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (5 bp):
AAAGG
Found at i:11954717 original size:15 final size:15
Alignment explanation
Indices: 11954693--11954741 Score: 53
Period size: 15 Copynumber: 3.1 Consensus size: 15
11954683 TTAAATTTTT
* *
11954693 AATTTCAATTATCAA
1 AATTTAAATTATAAA
*
11954708 AATTTAAATTCTAAA
1 AATTTAAATTATAAA
11954723 AATTTTAAATATATAAA
1 AA-TTTAAAT-TATAAA
11954740 AA
1 AA
11954742 AAATTATATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
15 14 0.50
16 7 0.25
17 7 0.25
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTTAAATTATAAA
Found at i:11954786 original size:2 final size:2
Alignment explanation
Indices: 11954781--11954824 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
11954771 AATGTGTGTG
11954781 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11954823 TA
1 TA
11954825 AACAACTCTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:11955753 original size:19 final size:20
Alignment explanation
Indices: 11955707--11955753 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
11955697 TTCTTTTATC
11955707 TATTTT-AATATTTAATAAA
1 TATTTTAAATATTTAATAAA
**
11955726 TATTTTAAATATTTTTTAAA
1 TATTTTAAATATTTAATAAA
11955746 -ATTTTAAA
1 TATTTTAAA
11955754 GCGAGGTCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TATTTTAAATATTTAATAAA
Found at i:11956598 original size:12 final size:12
Alignment explanation
Indices: 11956583--11956626 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
11956573 TTGTATTTCA
*
11956583 ATTAATAAAGAT
1 ATTAATAAATAT
* *
11956595 ATTATTTAATAT
1 ATTAATAAATAT
11956607 ATTAATTAAATAT
1 ATTAA-TAAATAT
11956620 ATTAATA
1 ATTAATA
11956627 TTTTAAACTC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
12 15 0.58
13 11 0.42
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (12 bp):
ATTAATAAATAT
Found at i:11956620 original size:13 final size:13
Alignment explanation
Indices: 11956583--11956625 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
11956573 TTGTATTTCA
*
11956583 ATTAA-TAAAGAT
1 ATTAATTAAATAT
*
11956595 ATT-ATTTAATAT
1 ATTAATTAAATAT
11956607 ATTAATTAAATAT
1 ATTAATTAAATAT
11956620 ATTAAT
1 ATTAAT
11956626 ATTTTAAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 1 0.04
12 11 0.42
13 14 0.54
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (13 bp):
ATTAATTAAATAT
Found at i:11965393 original size:21 final size:21
Alignment explanation
Indices: 11965363--11965402 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
11965353 AAAAAGAAAT
*
11965363 TTATAAAATATAA-TTTTACA
1 TTATAAAATAAAAGTTTTACA
11965383 TTATAAAAATAAAAGTTTTA
1 TTAT-AAAATAAAAGTTTTA
11965403 GATATTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 8 0.47
22 5 0.29
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (21 bp):
TTATAAAATAAAAGTTTTACA
Found at i:11975677 original size:22 final size:22
Alignment explanation
Indices: 11975618--11975679 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 22
11975608 CTTTAAAATA
*
11975618 TTAAAAATAGTTTAATTTTTATAT
1 TTAAAAATA-TTT-ATTTTTATAC
*
11975642 TTAAAAGA-AATTATTTTTATAC
1 TTAAAA-ATATTTATTTTTATAC
*
11975664 TTAAAATTATTTATTT
1 TTAAAAATATTTATTT
11975680 AAAGTTTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
22 22 0.69
23 2 0.06
24 7 0.22
25 1 0.03
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (22 bp):
TTAAAAATATTTATTTTTATAC
Found at i:11987351 original size:21 final size:21
Alignment explanation
Indices: 11987289--11987358 Score: 68
Period size: 23 Copynumber: 3.1 Consensus size: 21
11987279 AAATAAAAAA
*
11987289 ATTATAAAAAATAATTATATAAT
1 ATTA-AAAAAATAATTTTA-AAT
* *
11987312 ATAAAAAATTAATAGTTTTAAAT
1 ATTAAAAA--AATAATTTTAAAT
11987335 ATTAAAAAAATAATTTTGAAAT
1 ATTAAAAAAATAATTTT-AAAT
11987357 AT
1 AT
11987359 CCAAAAAAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
21 8 0.21
22 10 0.26
23 13 0.33
24 8 0.21
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.39
Consensus pattern (21 bp):
ATTAAAAAAATAATTTTAAAT
Found at i:11987364 original size:22 final size:21
Alignment explanation
Indices: 11987294--11987366 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 21
11987284 AAAAAATTAT
* *
11987294 AAAAAATAATTATATAATATAA
1 AAAAAATAATTTTA-AATATCA
* *
11987316 AAAATTAATAGTTTTAAATATTA
1 AAAA--AATAATTTTAAATATCA
*
11987339 AAAAAATAATTTTGAAATATCC
1 AAAAAATAATTTT-AAATATCA
11987361 AAAAAA
1 AAAAAA
11987367 GAAATGAACA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
21 8 0.19
22 16 0.38
23 10 0.24
24 8 0.19
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (21 bp):
AAAAAATAATTTTAAATATCA
Found at i:11995955 original size:3 final size:3
Alignment explanation
Indices: 11995949--11995984 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
11995939 TGCAAAAAAA
11995949 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
11995985 AAAACCATTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:11996953 original size:17 final size:17
Alignment explanation
Indices: 11996933--11996970 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
11996923 TTTTTTTCAA
11996933 TTTTTAT-ATTTAATATT
1 TTTTTATCATTTAA-ATT
*
11996950 TTTTTTTCATTTAAATT
1 TTTTTATCATTTAAATT
11996967 TTTT
1 TTTT
11996971 AAAGCTAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTATCATTTAAATT
Found at i:11997303 original size:20 final size:19
Alignment explanation
Indices: 11997267--11997308 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
11997257 CTTTTATCTA
11997267 TTTTAATATTTAATAAATAT
1 TTTTAATATTTAATAAA-AT
**
11997287 TTTTAATATTTTTTAAAAT
1 TTTTAATATTTAATAAAAT
11997306 TTT
1 TTT
11997309 GAATCGAGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTAATATTTAATAAAAT
Found at i:11998050 original size:5 final size:5
Alignment explanation
Indices: 11998040--11998072 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
11998030 CTCATTTGGC
11998040 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
11998073 TTCATTTTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:11998133 original size:20 final size:20
Alignment explanation
Indices: 11998110--11998155 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
11998100 CTCTTTTTTA
**
11998110 TTTTTTTTGTTTATTTTTCC
1 TTTTTTTTCATTATTTTTCC
* *
11998130 TTTTTCTTCATTATTTTTTC
1 TTTTTTTTCATTATTTTTCC
11998150 TTTTTT
1 TTTTTT
11998156 GGATTTCAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.07, C:0.11, G:0.02, T:0.80
Consensus pattern (20 bp):
TTTTTTTTCATTATTTTTCC
Found at i:11998201 original size:13 final size:13
Alignment explanation
Indices: 11998174--11998206 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
11998164 ATTAATAACG
*
11998174 ATATT-ATTTAAT
1 ATATTAATTAAAT
11998186 ATATTAATTAAAT
1 ATATTAATTAAAT
11998199 ATATTAAT
1 ATATTAAT
11998207 ATTTTAAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATTAATTAAAT
Found at i:11998727 original size:16 final size:16
Alignment explanation
Indices: 11998706--11998736 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
11998696 CATGTGGTTA
*
11998706 TTTTTTATTTTTTTAC
1 TTTTTTATTCTTTTAC
11998722 TTTTTTATTCTTTTA
1 TTTTTTATTCTTTTA
11998737 ATTACATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTTATTCTTTTAC
Found at i:11999093 original size:1 final size:1
Alignment explanation
Indices: 11999087--11999129 Score: 86
Period size: 1 Copynumber: 43.0 Consensus size: 1
11999077 CAAAAGAGTG
11999087 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
11999130 CACTAGCACT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:12007087 original size:16 final size:17
Alignment explanation
Indices: 12007066--12007111 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
12007056 CATAAAAGAA
12007066 TATTTTTTAAAA-GTTT
1 TATTTTTTAAAATGTTT
* *
12007082 TA-TTTTAAAAATTTTT
1 TATTTTTTAAAATGTTT
12007098 TATTTTTATAAAAT
1 TATTTTT-TAAAAT
12007112 AATATTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 8 0.33
16 7 0.29
17 4 0.17
18 5 0.21
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (17 bp):
TATTTTTTAAAATGTTT
Found at i:12007533 original size:2 final size:2
Alignment explanation
Indices: 12007526--12007557 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
12007516 ACCTGACCTG
12007526 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12007558 GATTTTATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12007609 original size:19 final size:20
Alignment explanation
Indices: 12007559--12007610 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
12007549 TATATATATG
*
12007559 ATTTTATTATTATTTATTTA
1 ATTTTATTTTTATTTATTTA
*
12007579 ATTTTATATTTATTTATTT-
1 ATTTTATTTTTATTTATTTA
12007598 ATTTTATTTTTAT
1 ATTTTATTTTTAT
12007611 ATTAAAATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (20 bp):
ATTTTATTTTTATTTATTTA
Found at i:12007613 original size:8 final size:9
Alignment explanation
Indices: 12007529--12007613 Score: 54
Period size: 8 Copynumber: 9.7 Consensus size: 9
12007519 TGACCTGATA
*
12007529 TATATATAT
1 TATATTTAT
*
12007538 ATATATATAT
1 -TATATTTAT
*
12007548 ATATATATAT
1 -TATATTTAT
*
12007558 GAT-TTTAT
1 TATATTTAT
12007566 TATTATTTAT
1 TA-TATTTAT
*
12007576 T-TAATT-T
1 TATATTTAT
12007583 TATATTTAT
1 TATATTTAT
12007592 T-TATTTAT
1 TATATTTAT
*
12007600 TTTATTT-T
1 TATATTTAT
12007608 TATATT
1 TATATT
12007614 AAAATATTAA
Statistics
Matches: 64, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
7 2 0.03
8 27 0.42
9 10 0.16
10 25 0.39
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (9 bp):
TATATTTAT
Found at i:12007621 original size:25 final size:25
Alignment explanation
Indices: 12007569--12007632 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
12007559 ATTTTATTAT
* * **
12007569 TATTTA-TTTAATTTTATATTTATT
1 TATTTATTTTATTTTTATATTAAAA
12007593 TATTTATTTTATTTTTATATTAAAA
1 TATTTATTTTATTTTTATATTAAAA
12007618 TATTAATATTTTATT
1 TATT--TATTTTATT
12007633 AATTTTAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 6 0.18
25 18 0.55
27 9 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (25 bp):
TATTTATTTTATTTTTATATTAAAA
Found at i:12007705 original size:32 final size:32
Alignment explanation
Indices: 12007645--12007705 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
12007635 TTTTAATTGT
* * *
12007645 ATCAAATCGATTATAAATTTAAATATATATAA
1 ATCAAATCAATTATAAATATAAAAATATATAA
12007677 ATCAAATCAAATTA-AAATATAAAAATATA
1 ATCAAATC-AATTATAAATATAAAAATATA
12007706 ATATTTTAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
32 21 0.84
33 4 0.16
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.33
Consensus pattern (32 bp):
ATCAAATCAATTATAAATATAAAAATATATAA
Found at i:12008493 original size:24 final size:24
Alignment explanation
Indices: 12008456--12008502 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
12008446 TAATTTATTA
* * *
12008456 ATAATATATAAAATTTATATTTTG
1 ATAATACATAAAATATAAATTTTG
*
12008480 ATAATACATCAAATATAAATTTT
1 ATAATACATAAAATATAAATTTT
12008503 TTAAAATTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAATACATAAAATATAAATTTTG
Found at i:12008516 original size:19 final size:20
Alignment explanation
Indices: 12008492--12008529 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
12008482 AATACATCAA
12008492 ATATAAATTT-TTTAAAATT
1 ATATAAATTTATTTAAAATT
12008511 ATATAAATTTATTTAAAAT
1 ATATAAATTTATTTAAAAT
12008530 GTAATTGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATAAATTTATTTAAAATT
Found at i:12008716 original size:6 final size:6
Alignment explanation
Indices: 12008705--12008731 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
12008695 ACTTAAGCAT
12008705 AATCAA AATCAA AATCAA AATCAA AAT
1 AATCAA AATCAA AATCAA AATCAA AAT
12008732 GCAATTAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.15, G:0.00, T:0.19
Consensus pattern (6 bp):
AATCAA
Found at i:12021123 original size:27 final size:28
Alignment explanation
Indices: 12021086--12021139 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
12021076 ACAAATATGA
12021086 TTTTAACTATTTTGA-TTTAAATTTATTT
1 TTTTAACTA-TTTGAGTTTAAATTTATTT
12021114 TTTTAA-TATTTGAGTTTAAATTTATT
1 TTTTAACTATTTGAGTTTAAATTTATT
12021140 AAAAAGTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 5 0.20
27 14 0.56
28 6 0.24
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.63
Consensus pattern (28 bp):
TTTTAACTATTTGAGTTTAAATTTATTT
Found at i:12021806 original size:20 final size:20
Alignment explanation
Indices: 12021781--12021830 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
12021771 ATTTTTTAAA
12021781 TTATTTATTT-ATATTTATAT
1 TTATTTATTTAAT-TTTATAT
12021801 TTATTTATTTAATTTTATA-
1 TTATTTATTTAATTTTATAT
12021820 TT-TTTATTTAA
1 TTATTTATTTAA
12021831 AATAATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 9 0.31
19 2 0.07
20 16 0.55
21 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (20 bp):
TTATTTATTTAATTTTATAT
Found at i:12023962 original size:2 final size:2
Alignment explanation
Indices: 12023955--12023994 Score: 53
Period size: 2 Copynumber: 20.0 Consensus size: 2
12023945 GTTTATATGA
* * *
12023955 AT AT AT AT AT AT AT AT AT AT GT AT AT TT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12023995 GCCTTTGCAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12030742 original size:34 final size:33
Alignment explanation
Indices: 12030704--12030783 Score: 88
Period size: 34 Copynumber: 2.4 Consensus size: 33
12030694 TTTTGAGAAT
* **
12030704 TTATAATACTTTTCAAAAATGTATTTTCAAAAAA
1 TTATAAAACTTTTCAAAAATACATTTT-AAAAAA
* *
12030738 TTATAAAATTTTTTAAAAATACATTTTAAAAAA
1 TTATAAAACTTTTCAAAAATACATTTTAAAAAA
*
12030771 TCTATAACACTTT
1 T-TATAAAACTTT
12030784 ACTTCTCGAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 7 0.18
34 31 0.82
ACGTcount: A:0.47, C:0.09, G:0.01, T:0.42
Consensus pattern (33 bp):
TTATAAAACTTTTCAAAAATACATTTTAAAAAA
Found at i:12035079 original size:2 final size:2
Alignment explanation
Indices: 12035072--12035112 Score: 64
Period size: 2 Copynumber: 19.5 Consensus size: 2
12035062 TTTAAATTTC
12035072 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TCA TA TCA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA T-A TA T
12035113 CTACACATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 33 0.89
3 4 0.11
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:12037955 original size:18 final size:19
Alignment explanation
Indices: 12037934--12037981 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
12037924 AAACTAAAAT
12037934 AAAAATAAAAACTCC-CAA
1 AAAAATAAAAACTCCTCAA
* *
12037952 AAAAA-CAAAATTCCTCAA
1 AAAAATAAAAACTCCTCAA
12037970 AAAAATTAAAAA
1 AAAAA-TAAAAA
12037982 AAAAAAGAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 7 0.29
18 13 0.54
20 4 0.17
ACGTcount: A:0.69, C:0.17, G:0.00, T:0.15
Consensus pattern (19 bp):
AAAAATAAAAACTCCTCAA
Found at i:12046341 original size:12 final size:12
Alignment explanation
Indices: 12046326--12046365 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
12046316 CTAAATAATA
12046326 ATAAAAATTATT
1 ATAAAAATTATT
**
12046338 ATAATTATTATT
1 ATAAAAATTATT
*
12046350 AAAAAAATTATT
1 ATAAAAATTATT
12046362 ATAA
1 ATAA
12046366 TTTTAATTAA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATAAAAATTATT
Found at i:12046355 original size:24 final size:24
Alignment explanation
Indices: 12046328--12046379 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
12046318 AAATAATAAT
12046328 AAAAATTATTATAATTATT-ATTAA
1 AAAAATTATTATAATT-TTAATTAA
12046352 AAAAATTATTATAATTTTAATTAA
1 AAAAATTATTATAATTTTAATTAA
12046376 AAAA
1 AAAA
12046380 TTCAATGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 2 0.07
24 25 0.93
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (24 bp):
AAAAATTATTATAATTTTAATTAA
Found at i:12057647 original size:23 final size:21
Alignment explanation
Indices: 12057617--12057775 Score: 81
Period size: 23 Copynumber: 7.7 Consensus size: 21
12057607 TAATTTTATT
12057617 TTATAAATAATATTATAATATA
1 TTATAAATAATA-TATAATATA
12057639 TTCATAAATAATATATTAATAAATA
1 TT-ATAAATAATATA-TAAT--ATA
*
12057664 TTAT-ACTAATATATTAATAT-
1 TTATAAATAATATA-TAATATA
* *
12057684 TAATAAATAATAT-T-GTAT-
1 TTATAAATAATATATAATATA
*
12057702 TAATAAATAA-ATA-ACAT-TA
1 TTATAAATAATATATA-ATATA
*
12057721 -TATTAATAA-ATCAT-ATAT-
1 TTATAAATAATAT-ATAATATA
* *
12057739 TAAGAAATAATATTATAATATA
1 TTATAAATAATA-TATAATATA
12057761 TTAATAAATAATATA
1 TT-ATAAATAATATA
12057776 AAAATAATAA
Statistics
Matches: 107, Mismatches: 12, Indels: 36
0.69 0.08 0.23
Matches are distributed among these distances:
17 2 0.02
18 25 0.23
19 10 0.09
20 6 0.06
21 14 0.13
22 7 0.07
23 36 0.34
24 2 0.02
25 5 0.05
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.42
Consensus pattern (21 bp):
TTATAAATAATATATAATATA
Found at i:12057692 original size:44 final size:42
Alignment explanation
Indices: 12057618--12057766 Score: 128
Period size: 44 Copynumber: 3.5 Consensus size: 42
12057608 AATTTTATTT
* * *
12057618 TATAAATAATATTATAATATATTCATAAATAATATATTAATAAA
1 TATATATAATA-TATTA-ATATTAATAAATAATATATTAATAAA
12057662 TATTATACTAATATATTAATATTAATAAATAATATTGTATTAATAAA
1 TA-TATA-TAATATATTAATATTAATAAATAATA---TATTAATAAA
* * *
12057709 TA-A-AT-A-ACATT-ATATTAATAAATCATATATTAAGAAA
1 TATATATAATATATTAATATTAATAAATAATATATTAATAAA
12057746 TAATATTATAATATATTAATA
1 T-ATA-TATAATATATTAATA
12057767 AATAATATAA
Statistics
Matches: 86, Mismatches: 7, Indels: 24
0.74 0.06 0.21
Matches are distributed among these distances:
37 10 0.12
38 1 0.01
39 1 0.01
40 15 0.17
41 6 0.07
42 2 0.02
43 5 0.06
44 21 0.24
45 8 0.09
46 5 0.06
47 12 0.14
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (42 bp):
TATATATAATATATTAATATTAATAAATAATATATTAATAAA
Done.