Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 69 of 77
Found at i:13819724 original size:63 final size:63
Alignment explanation
Indices: 13819622--13819747 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
13819612 CCATGGTGCG
* *
13819622 GTTAAAGGGAAGGCGAGGAAGTGAAAAAGCTTAGAAAGAAAGTAAAAGGATTAAAGGAGTTTA
1 GTTAAAGGGAAGGAGAGGAAGTGAAAAAGCGTAGAAAGAAAGTAAAAGGATTAAAGGAGTTTA
* *
13819685 GTTAAAGGGAAGGAGAGGAAGTGAAAAAGCGTAGGAAGAAAGTAAATGGATTAAAGGAGTTTA
1 GTTAAAGGGAAGGAGAGGAAGTGAAAAAGCGTAGAAAGAAAGTAAAAGGATTAAAGGAGTTTA
13819748 AGTGGCTGTT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.47, C:0.02, G:0.33, T:0.17
Consensus pattern (63 bp):
GTTAAAGGGAAGGAGAGGAAGTGAAAAAGCGTAGAAAGAAAGTAAAAGGATTAAAGGAGTTTA
Found at i:13821072 original size:2 final size:2
Alignment explanation
Indices: 13821065--13821112 Score: 69
Period size: 2 Copynumber: 24.0 Consensus size: 2
13821055 ATTATTGAGT
* * *
13821065 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13821107 TA TA TA
1 TA TA TA
13821113 ATCGGAAGGA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13821197 original size:25 final size:23
Alignment explanation
Indices: 13821159--13821223 Score: 58
Period size: 25 Copynumber: 2.7 Consensus size: 23
13821149 TTATTCGGTC
* * *
13821159 TAATATATATTTTTAATATTAATT
1 TAATATTTAATTTTAAGATTAA-T
13821183 TGAATATTTAATTTTGAAAGATTAAT
1 T-AATATTTAATTTT--AAGATTAAT
*
13821209 TAATATTTTATTTTA
1 TAATATTTAATTTTA
13821224 TTTTTTATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
23 1 0.03
24 1 0.03
25 23 0.68
26 2 0.06
27 7 0.21
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (23 bp):
TAATATTTAATTTTAAGATTAAT
Found at i:13821455 original size:25 final size:25
Alignment explanation
Indices: 13821427--13821474 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
13821417 ATATATATAA
*
13821427 ATATATATATGCTACACTTGCTTAT
1 ATATATAAATGCTACACTTGCTTAT
13821452 ATATATAAATGCTACACTTGCTT
1 ATATATAAATGCTACACTTGCTT
13821475 TATTGTTCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.08, T:0.42
Consensus pattern (25 bp):
ATATATAAATGCTACACTTGCTTAT
Found at i:13821705 original size:32 final size:32
Alignment explanation
Indices: 13821639--13821706 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
13821629 TAGACTTTAT
*
13821639 AATTTATATATTTATATCATATAAAATATTAA
1 AATTTATATATTTATATCATATAAAATATAAA
* ***
13821671 AATTTATATATTTATATTATATTTTATATAAA
1 AATTTATATATTTATATCATATAAAATATAAA
13821703 AATT
1 AATT
13821707 ATTTATTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.51
Consensus pattern (32 bp):
AATTTATATATTTATATCATATAAAATATAAA
Found at i:13822908 original size:20 final size:21
Alignment explanation
Indices: 13822871--13822934 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
13822861 CGTACCTTAC
*
13822871 ATATATATATTTTATATTTAATA
1 ATATA-AT-TTTTATATTAAATA
*
13822894 A-ATAATTTTTTTATTAAATA
1 ATATAATTTTTATATTAAATA
* *
13822914 ATATAAATTATTATCTTAAAT
1 ATAT-AATTTTTATATTAAAT
13822935 TAATTAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
20 13 0.38
21 4 0.12
22 16 0.47
23 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (21 bp):
ATATAATTTTTATATTAAATA
Found at i:13825273 original size:20 final size:20
Alignment explanation
Indices: 13825248--13825285 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13825238 ATCATATAAA
13825248 ATATTAAAATTTATATAATT
1 ATATTAAAATTTATATAATT
* *
13825268 ATATTATATTTTATATAA
1 ATATTAAAATTTATATAA
13825286 AAATTATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATTAAAATTTATATAATT
Found at i:13825293 original size:31 final size:30
Alignment explanation
Indices: 13825252--13825371 Score: 97
Period size: 31 Copynumber: 4.0 Consensus size: 30
13825242 TATAAAATAT
*
13825252 TAAAATTTATATAATTATATTATATTTTATA
1 TAAAAATTATA-AATTATATTATATTTTATA
* *
13825283 TAAAAATTATATATTATAATT-TATATTGATA
1 TAAAAATTATAAATTAT-ATTATAT-TTTATA
* * * *
13825314 TGAAAA-TATAAAATATTTTTTTATTTTAT-
1 TAAAAATTATAAATTA-TATTATATTTTATA
*
13825343 T-AAAATTTTAAATTATATTAT-TTTTATA
1 TAAAAATTATAAATTATATTATATTTTATA
13825371 T
1 T
13825372 CTTTATTTCA
Statistics
Matches: 71, Mismatches: 12, Indels: 15
0.72 0.12 0.15
Matches are distributed among these distances:
27 6 0.08
28 9 0.13
29 8 0.11
30 21 0.30
31 27 0.38
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (30 bp):
TAAAAATTATAAATTATATTATATTTTATA
Found at i:13832393 original size:98 final size:99
Alignment explanation
Indices: 13832230--13832425 Score: 225
Period size: 98 Copynumber: 2.0 Consensus size: 99
13832220 AATCTGTAAA
* * * * * * *
13832230 AAAATATTTTGGGTCAAATTAAATTAAGATTCCATGACATAAATATATAATATGTCTAACGTAAA
1 AAAATATTTCGGATCAAATCAAATTAAGATTCCATGAAATAAATATATAATATATATAACATAAA
*
13832295 GTATTGTAAGTCTAATCGG-CTTAAGTAATTTAT
66 GCATTGTAAGTCTAATCGGTCTTAAGTAATTTAT
* * * *
13832328 AAAATATTTCGGATTAAATCAAATT-AGATTTCATGAAATAAATATATGATATATATACCTATAA
1 AAAATATTTCGGATCAAATCAAATTAAGATTCCATGAAATAAATATATAATATATATAAC-ATAA
* * * *
13832392 AGCATTTTAGGTCTAATCGGTTTTAATTAATTTA
65 AGCATTGTAAGTCTAATCGGTCTTAAGTAATTTA
13832426 AAATTAGGTC
Statistics
Matches: 80, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
97 28 0.35
98 41 0.51
99 11 0.14
ACGTcount: A:0.41, C:0.09, G:0.12, T:0.38
Consensus pattern (99 bp):
AAAATATTTCGGATCAAATCAAATTAAGATTCCATGAAATAAATATATAATATATATAACATAAA
GCATTGTAAGTCTAATCGGTCTTAAGTAATTTAT
Found at i:13834621 original size:26 final size:27
Alignment explanation
Indices: 13834570--13834632 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
13834560 TTATTTAAAA
13834570 TAATATTAAATATTAAAATATGA-TTT
1 TAATATTAAATATTAAAATATGATTTT
* *
13834596 TAATATTAATATTTTTAAATAT-ATTTT
1 TAATATTAA-ATATTAAAATATGATTTT
13834623 TAA-ATTAAAT
1 TAATATTAAAT
13834633 TAAATAATAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
25 2 0.06
26 15 0.45
27 16 0.48
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (27 bp):
TAATATTAAATATTAAAATATGATTTT
Found at i:13835277 original size:13 final size:13
Alignment explanation
Indices: 13835259--13835283 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13835249 ATTTTTAAAA
13835259 AATTTAAAAAATT
1 AATTTAAAAAATT
13835272 AATTTAAAAAAT
1 AATTTAAAAAAT
13835284 AAATGGGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AATTTAAAAAATT
Found at i:13835908 original size:16 final size:17
Alignment explanation
Indices: 13835887--13835918 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13835877 TATGACATAC
13835887 TGATAT-AATAAAAAAA
1 TGATATGAATAAAAAAA
13835903 TGATATGAATAAAAAA
1 TGATATGAATAAAAAA
13835919 TATAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (17 bp):
TGATATGAATAAAAAAA
Found at i:13838157 original size:16 final size:18
Alignment explanation
Indices: 13838138--13838170 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
13838128 TTTTTTATTG
13838138 ATATCA-TTT-TCATATC
1 ATATCACTTTATCATATC
13838154 ATATCACTTTATCATAT
1 ATATCACTTTATCATAT
13838171 TTGAGATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 3 0.20
18 6 0.40
ACGTcount: A:0.33, C:0.18, G:0.00, T:0.48
Consensus pattern (18 bp):
ATATCACTTTATCATATC
Found at i:13838650 original size:18 final size:19
Alignment explanation
Indices: 13838622--13838660 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
13838612 AAATTAATCA
13838622 AATTAAATTAAATT-ATTTT
1 AATTAAATT-AATTAATTTT
13838641 AATT-AATTAATTAATTTT
1 AATTAAATTAATTAATTTT
13838659 AA
1 AA
13838661 AAATTAACCG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 11 0.58
19 4 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AATTAAATTAATTAATTTT
Found at i:13845538 original size:30 final size:30
Alignment explanation
Indices: 13845465--13845540 Score: 91
Period size: 30 Copynumber: 2.5 Consensus size: 30
13845455 TTATTCCAAA
* *
13845465 CAAATAAGTCCTTAATCTTTAATTTGCATC
1 CAAATAAATCCTTAATCTTCAATTTGCATC
* *
13845495 CAAATAAACCCTTAATCTTCAATTTGTA-C
1 CAAATAAATCCTTAATCTTCAATTTGCATC
*
13845524 CTAAATATATCCTTAAT
1 C-AAATAAATCCTTAAT
13845541 ATAAATCAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
29 2 0.05
30 37 0.95
ACGTcount: A:0.37, C:0.21, G:0.04, T:0.38
Consensus pattern (30 bp):
CAAATAAATCCTTAATCTTCAATTTGCATC
Found at i:13845639 original size:24 final size:26
Alignment explanation
Indices: 13845588--13845641 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 26
13845578 GATACAAATG
13845588 AAGTATAAAGGCTTATTTGAGTTCAATAA
1 AAGTATAAAGGCTTATTTGA--T-AATAA
13845617 AAGTATAAAGGCTTATTT-A-AATAA
1 AAGTATAAAGGCTTATTTGATAATAA
13845641 A
1 A
13845642 GTTGAATAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
24 6 0.24
28 1 0.04
29 18 0.72
ACGTcount: A:0.46, C:0.06, G:0.15, T:0.33
Consensus pattern (26 bp):
AAGTATAAAGGCTTATTTGATAATAA
Found at i:13850427 original size:22 final size:23
Alignment explanation
Indices: 13850382--13850427 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
13850372 GATATATAAG
**
13850382 TTTTTAAAAATTAATTTTTTTAT
1 TTTTTAAAAATTAATTTTAATAT
*
13850405 TTTTTAAATATT-ATTTTAATAT
1 TTTTTAAAAATTAATTTTAATAT
13850427 T
1 T
13850428 AAAATATAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (23 bp):
TTTTTAAAAATTAATTTTAATAT
Found at i:13853157 original size:83 final size:84
Alignment explanation
Indices: 13853017--13853182 Score: 271
Period size: 83 Copynumber: 2.0 Consensus size: 84
13853007 GTAAGTTCCC
13853017 TTTTACTTTTCTCTCATTTTTCATTCATTTTCTCGGTAACCAAACATGGGTCAATTTTAGATTTT
1 TTTTACTTTTCTCTCATTTTTCATTCATTTTCTCGGTAACCAAACATGGGTCAATTTTAGATTTT
*
13853082 -AGTCTTAGGGTTTTATCT
66 AAGTCTTACGGTTTTATCT
* * * *
13853100 TTTTATTTTTCTCTCATTTTTCATTTATTTTCTTGGTAACCAAACATGGGTCGATTTTAGATTTT
1 TTTTACTTTTCTCTCATTTTTCATTCATTTTCTCGGTAACCAAACATGGGTCAATTTTAGATTTT
13853165 AGAGTCTTACGGTTTTAT
66 A-AGTCTTACGGTTTTAT
13853183 GTAGATCCCT
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
83 61 0.80
85 15 0.20
ACGTcount: A:0.20, C:0.15, G:0.13, T:0.52
Consensus pattern (84 bp):
TTTTACTTTTCTCTCATTTTTCATTCATTTTCTCGGTAACCAAACATGGGTCAATTTTAGATTTT
AAGTCTTACGGTTTTATCT
Found at i:13856814 original size:14 final size:14
Alignment explanation
Indices: 13856791--13856827 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
13856781 TTTTTTCTAA
13856791 ATTATATAATTTAT
1 ATTATATAATTTAT
*
13856805 ATTATGTAATTTAT
1 ATTATATAATTTAT
13856819 ATTATATAA
1 ATTATATAA
13856828 AAGATAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (14 bp):
ATTATATAATTTAT
Found at i:13858299 original size:2 final size:2
Alignment explanation
Indices: 13858292--13858318 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
13858282 GTTTTGATGT
13858292 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
13858319 TTTATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13859048 original size:157 final size:163
Alignment explanation
Indices: 13858744--13859064 Score: 456
Period size: 157 Copynumber: 2.0 Consensus size: 163
13858734 GCTCCTGGGA
* * * *
13858744 TTAATGATAAGAACTAATATCAAATGGCCTGTTCATGGTGGCCAGCAGTAGAATTATTTGGTATC
1 TTAATGATAAGAAATAACATCAAATGGCCTGTTCATGGTGGCCAGCAGTAGAATTA-TT-GCAAC
*
13858809 ATCATATTAGTTTTATTCATTAAATTTTACCTATTGTTTGAACATCTTCAGTATGGAAATGGAGA
64 ATCATATTAGTTTCATTCATTAAATTTTACCTATTGTTTGAACATCTTCAGTATGGAAATGGAGA
*
13858874 TGACTTGACTGCGATAAATGTTCATATCTGATAGT
129 TGACTTGACTGCCATAAATGTTCATATCTGATAGT
**
13858909 TTAATGATAAGAAATAACATCAAATGGCCTGTTCATGGTGTTCAGCAGTAGAA-TA-T-CAACAT
1 TTAATGATAAGAAATAACATCAAATGGCCTGTTCATGGTGGCCAGCAGTAGAATTATTGCAACAT
* * * *
13858971 -AT-TTCG-TTCATTCATTGAATTTTACCTATTGTTTTAACATCTTCAGTATGGCAATGGAGATG
66 CATATTAGTTTCATTCATTAAATTTTACCTATTGTTTGAACATCTTCAGTATGGAAATGGAGATG
* *
13859033 ACTTTACTTCCATAAATGTTCATATCTGATAG
131 ACTTGACTGCCATAAATGTTCATATCTGATAG
13859065 GTTTTTTAGC
Statistics
Matches: 142, Mismatches: 14, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
157 81 0.57
158 3 0.02
159 2 0.01
160 4 0.03
162 1 0.01
164 2 0.01
165 49 0.35
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37
Consensus pattern (163 bp):
TTAATGATAAGAAATAACATCAAATGGCCTGTTCATGGTGGCCAGCAGTAGAATTATTGCAACAT
CATATTAGTTTCATTCATTAAATTTTACCTATTGTTTGAACATCTTCAGTATGGAAATGGAGATG
ACTTGACTGCCATAAATGTTCATATCTGATAGT
Found at i:13862990 original size:29 final size:31
Alignment explanation
Indices: 13862948--13863024 Score: 79
Period size: 29 Copynumber: 2.5 Consensus size: 31
13862938 GAAATATTTT
* *
13862948 ATATAATGTGTGAATTTTAAAAAT-TT-TTA
1 ATATAATATTTGAATTTTAAAAATGTTATTA
* * *
13862977 ATATGATATTTGAATTATAAATATGTTAATTA
1 ATATAATATTTGAATTTTAAAAATGTT-ATTA
13863009 ATATAATATTT-AATTT
1 ATATAATATTTGAATTT
13863025 AATTTGATTA
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
29 19 0.50
30 2 0.05
31 4 0.11
32 13 0.34
ACGTcount: A:0.43, C:0.00, G:0.08, T:0.49
Consensus pattern (31 bp):
ATATAATATTTGAATTTTAAAAATGTTATTA
Found at i:13865666 original size:2 final size:2
Alignment explanation
Indices: 13865659--13865689 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13865649 TTTGATGTTT
13865659 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
13865690 TTTTTTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13867899 original size:37 final size:37
Alignment explanation
Indices: 13867849--13867924 Score: 152
Period size: 37 Copynumber: 2.1 Consensus size: 37
13867839 TATGATAAAC
13867849 TGCCCATTTAAGTTCTAAATAATAACTATGCATTGTT
1 TGCCCATTTAAGTTCTAAATAATAACTATGCATTGTT
13867886 TGCCCATTTAAGTTCTAAATAATAACTATGCATTGTT
1 TGCCCATTTAAGTTCTAAATAATAACTATGCATTGTT
13867923 TG
1 TG
13867925 ATTTCAGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.41
Consensus pattern (37 bp):
TGCCCATTTAAGTTCTAAATAATAACTATGCATTGTT
Found at i:13876210 original size:27 final size:27
Alignment explanation
Indices: 13876180--13876249 Score: 131
Period size: 27 Copynumber: 2.6 Consensus size: 27
13876170 TGCAATTAGA
13876180 TTATCATAATATAAAAGCTGAAACAGT
1 TTATCATAATATAAAAGCTGAAACAGT
*
13876207 TTATCATAATATAAAAGCTGAAACTGT
1 TTATCATAATATAAAAGCTGAAACAGT
13876234 TTATCATAATATAAAA
1 TTATCATAATATAAAA
13876250 AGCAATAAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.49, C:0.10, G:0.09, T:0.33
Consensus pattern (27 bp):
TTATCATAATATAAAAGCTGAAACAGT
Found at i:13883786 original size:26 final size:24
Alignment explanation
Indices: 13883757--13883807 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 24
13883747 TTAAAATTTT
*
13883757 AAAATTTTTAATATCAAAAATTAAAA
1 AAAATTTTAAATAT-AAAAA-TAAAA
13883783 AAAATTTTAAATATAAAAATAAAA
1 AAAATTTTAAATATAAAAATAAAA
13883807 A
1 A
13883808 TTTTGAAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 6 0.25
25 5 0.21
26 13 0.54
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (24 bp):
AAAATTTTAAATATAAAAATAAAA
Found at i:13888238 original size:63 final size:63
Alignment explanation
Indices: 13888157--13888327 Score: 195
Period size: 62 Copynumber: 2.7 Consensus size: 63
13888147 CTTTTTTTTT
* *
13888157 GGGATTATTTAAAACATTTTTTATCAAAAAATATCTTGAATAATCTCTTACAAAAAATTAAAT
1 GGGATTATTTAAAGCATTTTTTATCAAAAAATATCTTGAATAATCTCTTACAAAAAATTAAAA
* * * * * * *
13888220 GGTATTATTTAAAGCATTTTTTAT-TAAAAACA-CTTTCAATAATTTCTTTCATAAAATTAAAA
1 GGGATTATTTAAAGCATTTTTTATCAAAAAATATC-TTGAATAATCTCTTACAAAAAATTAAAA
* ** *
13888282 GGGATTATTAAAAGC-GCTTTTAACAAAAAATATCTTGAATAATCTC
1 GGGATTATTTAAAGCATTTTTTATCAAAAAATATCTTGAATAATCTC
13888328 ATTTAAATTT
Statistics
Matches: 87, Mismatches: 18, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
61 6 0.07
62 58 0.67
63 23 0.26
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.39
Consensus pattern (63 bp):
GGGATTATTTAAAGCATTTTTTATCAAAAAATATCTTGAATAATCTCTTACAAAAAATTAAAA
Found at i:13891948 original size:33 final size:33
Alignment explanation
Indices: 13891906--13891972 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
13891896 CCTGTGCCCT
13891906 GAAGTTGTTTCTGACTTGCATACCATTTGATGA
1 GAAGTTGTTTCTGACTTGCATACCATTTGATGA
13891939 GAAGTTGTTTCTGACTTGCATACCATTTGATGA
1 GAAGTTGTTTCTGACTTGCATACCATTTGATGA
13891972 G
1 G
13891973 GGATGTCTTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.39
Consensus pattern (33 bp):
GAAGTTGTTTCTGACTTGCATACCATTTGATGA
Found at i:13892525 original size:55 final size:52
Alignment explanation
Indices: 13892463--13892566 Score: 147
Period size: 52 Copynumber: 1.9 Consensus size: 52
13892453 CGCAACGGCT
*
13892463 CAGATATTAGCACAACATTTCACATAGTCATG-CATTACTAAATACCAAGTTGGCC
1 CAGATATTAGCACAAAATTT--C--AGTCATGCCATTACTAAATACCAAGTTGGCC
*
13892518 CAGATATTAGCACAAAATTTCAGTCATGCCTTTACTAAATACCAAGTTG
1 CAGATATTAGCACAAAATTTCAGTCATGCCATTACTAAATACCAAGTTG
13892567 AGGAGCATCC
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
51 7 0.15
52 19 0.41
53 1 0.02
55 19 0.41
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.29
Consensus pattern (52 bp):
CAGATATTAGCACAAAATTTCAGTCATGCCATTACTAAATACCAAGTTGGCC
Found at i:13900121 original size:16 final size:17
Alignment explanation
Indices: 13900089--13900122 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
13900079 AGTGCTAGAT
*
13900089 TCTTTTATTTTTCAAAA
1 TCTTTTATTTTTAAAAA
13900106 TCTTTTA-TTTTAAAAA
1 TCTTTTATTTTTAAAAA
13900122 T
1 T
13900123 TACATATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.32, C:0.09, G:0.00, T:0.59
Consensus pattern (17 bp):
TCTTTTATTTTTAAAAA
Found at i:13909533 original size:21 final size:21
Alignment explanation
Indices: 13909462--13909534 Score: 60
Period size: 21 Copynumber: 3.5 Consensus size: 21
13909452 GAAATACGTA
* *
13909462 TTTTGGTAACCTTTGTTGTGT
1 TTTTGGTAATCTTTGTAGTGT
* * **
13909483 TTTTGGCAA-CTTTTTAAG-AA
1 TTTTGGTAATCTTTGT-AGTGT
*
13909503 TTTTGATAATCTTTGTAGTGT
1 TTTTGGTAATCTTTGTAGTGT
13909524 TTTTGGTAATC
1 TTTTGGTAATC
13909535 CATGTAAGAA
Statistics
Matches: 38, Mismatches: 11, Indels: 6
0.69 0.20 0.11
Matches are distributed among these distances:
20 14 0.37
21 24 0.63
ACGTcount: A:0.19, C:0.08, G:0.19, T:0.53
Consensus pattern (21 bp):
TTTTGGTAATCTTTGTAGTGT
Found at i:13909581 original size:12 final size:12
Alignment explanation
Indices: 13909564--13909590 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
13909554 ATCTTTGTAG
13909564 TTTTTTGTAATA
1 TTTTTTGTAATA
13909576 TTTTTTGTAATA
1 TTTTTTGTAATA
13909588 TTT
1 TTT
13909591 GTAATTTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (12 bp):
TTTTTTGTAATA
Found at i:13913866 original size:6 final size:6
Alignment explanation
Indices: 13913855--13913883 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
13913845 GTTGTTTCCT
13913855 TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
13913884 ATTTCAGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (6 bp):
TTTTTG
Found at i:13913869 original size:18 final size:19
Alignment explanation
Indices: 13913841--13913888 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
13913831 GCAAAGTGCC
13913841 GTTTGTTGTTTCCT-TTTTT
1 GTTT-TTGTTTCCTGTTTTT
*
13913860 GTTTTTGTTT-TTGTTTTT
1 GTTTTTGTTTCCTGTTTTT
*
13913878 GTTTTTATTTC
1 GTTTTTGTTTC
13913889 AGGTTTGTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 1 0.04
18 20 0.80
19 4 0.16
ACGTcount: A:0.02, C:0.06, G:0.15, T:0.77
Consensus pattern (19 bp):
GTTTTTGTTTCCTGTTTTT
Found at i:13929585 original size:145 final size:145
Alignment explanation
Indices: 13929408--13929697 Score: 571
Period size: 145 Copynumber: 2.0 Consensus size: 145
13929398 AAATGATCAA
13929408 AATTATAGCTTAATCATTATTTTAATCGAATTGATTCGCCCTAGTTTTGTTTTTCACTTGTTTTG
1 AATTATAGCTTAATCATTATTTTAATCGAATTGATTCGCCCTAGTTTTGTTTTTCACTTGTTTTG
13929473 TTACTTTAGCTCATTTTGGAATTTTTATTTATTTATTTATTTTTATTTGTATCTCTCGTGATGGT
66 TTACTTTAGCTCATTTTGGAATTTTTATTTATTTATTTATTTTTATTTGTATCTCTCGTGATGGT
13929538 TTGACTATGTTTTAC
131 TTGACTATGTTTTAC
13929553 AATTATAGCTTAATCATTATTTTAATCGAATTGATTCGCCCTAGTTTTGTTTTTCACTTGTTTTG
1 AATTATAGCTTAATCATTATTTTAATCGAATTGATTCGCCCTAGTTTTGTTTTTCACTTGTTTTG
*
13929618 TTACTTTAGCTCATTTTGGAATTTTTATTTATTTATTTATTTTTATTTTTATCTCTCGTGATGGT
66 TTACTTTAGCTCATTTTGGAATTTTTATTTATTTATTTATTTTTATTTGTATCTCTCGTGATGGT
13929683 TTGACTATGTTTTAC
131 TTGACTATGTTTTAC
13929698 GCTGGCCATC
Statistics
Matches: 144, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 144 1.00
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.56
Consensus pattern (145 bp):
AATTATAGCTTAATCATTATTTTAATCGAATTGATTCGCCCTAGTTTTGTTTTTCACTTGTTTTG
TTACTTTAGCTCATTTTGGAATTTTTATTTATTTATTTATTTTTATTTGTATCTCTCGTGATGGT
TTGACTATGTTTTAC
Found at i:13934301 original size:18 final size:18
Alignment explanation
Indices: 13934280--13934320 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
13934270 ACTTAATTTT
*
13934280 ATTTATTTATTTA-ATCTC
1 ATTTATTTATCTAGA-CTC
13934298 ATTTATTTATCTAGACTC
1 ATTTATTTATCTAGACTC
13934316 ATTTA
1 ATTTA
13934321 ACAAATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.29, C:0.12, G:0.02, T:0.56
Consensus pattern (18 bp):
ATTTATTTATCTAGACTC
Found at i:13935360 original size:25 final size:26
Alignment explanation
Indices: 13935332--13935380 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
13935322 AAATTGAGTT
*
13935332 TTGAATAATA-AATTTCAAATCGAAC
1 TTGAATAATATAAATTCAAATCGAAC
*
13935357 TTGAATAATATAAATTCGAATCGA
1 TTGAATAATATAAATTCAAATCGA
13935381 TTCAATTACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.47, C:0.10, G:0.10, T:0.33
Consensus pattern (26 bp):
TTGAATAATATAAATTCAAATCGAAC
Found at i:13945290 original size:18 final size:18
Alignment explanation
Indices: 13945267--13945302 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
13945257 GGTTCCTCAA
13945267 TTGTGAATAAGAAGCATT
1 TTGTGAATAAGAAGCATT
13945285 TTGTGAATAAGAAGCATT
1 TTGTGAATAAGAAGCATT
13945303 CTGTTTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.22, T:0.33
Consensus pattern (18 bp):
TTGTGAATAAGAAGCATT
Found at i:13945729 original size:14 final size:14
Alignment explanation
Indices: 13945710--13945738 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13945700 GACCTTATTT
13945710 ACCGGTCTTGAATG
1 ACCGGTCTTGAATG
13945724 ACCGGTCTTGAATG
1 ACCGGTCTTGAATG
13945738 A
1 A
13945739 AAACGGCTCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (14 bp):
ACCGGTCTTGAATG
Found at i:13945900 original size:89 final size:89
Alignment explanation
Indices: 13945782--13945952 Score: 299
Period size: 89 Copynumber: 1.9 Consensus size: 89
13945772 AAAACATGAT
* *
13945782 TATAAAAATAATAAGAAAATATACTGTTTAAAATTTTAATAAACACTATAAATATGTTTAATAAA
1 TATAAAAATAATAACAAAATATACTGTTTAAAATTTTAATAAAAACTATAAATATGTTTAATAAA
*
13945847 ATAAAAAAGTATTTTATAATACAAC
66 ATAAAAAA-AATTTTATAATACAAC
13945872 TATAAAAATAAT-ACAAAATATACTGTTTAAAATTTTAATAAAAACTATAAATATGTTTAATAAA
1 TATAAAAATAATAACAAAATATACTGTTTAAAATTTTAATAAAAACTATAAATATGTTTAATAAA
13945936 ATAAAAAAAATTTTATA
66 ATAAAAAAAATTTTATA
13945953 TTTTCATATT
Statistics
Matches: 78, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
88 8 0.10
89 58 0.74
90 12 0.15
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.35
Consensus pattern (89 bp):
TATAAAAATAATAACAAAATATACTGTTTAAAATTTTAATAAAAACTATAAATATGTTTAATAAA
ATAAAAAAAATTTTATAATACAAC
Found at i:13947005 original size:2 final size:2
Alignment explanation
Indices: 13946998--13947035 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
13946988 GTTGGTCAAC
13946998 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
13947036 GTATTGTCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:13948270 original size:10 final size:10
Alignment explanation
Indices: 13948255--13948287 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
13948245 AAAAATTATA
13948255 TATATGTATG
1 TATATGTATG
*
13948265 TATATGTATA
1 TATATGTATG
13948275 TATATGTATG
1 TATATGTATG
13948285 TAT
1 TAT
13948288 GAATGAATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (10 bp):
TATATGTATG
Found at i:13961585 original size:161 final size:161
Alignment explanation
Indices: 13961320--13961638 Score: 530
Period size: 161 Copynumber: 2.0 Consensus size: 161
13961310 TGAATAGTAA
* * * *
13961320 ATAACAAATCCTAACAAGACTGTATTATAACATCTAAACTTTAGACCGTCTGAACTCGAACCAAA
1 ATAACAAATCCTAACAAGACTATATAAGAACATCTAAACTTTAGACCGTCTGAACCCGAACCAAA
*
13961385 TCTCATAGTGATTGAACAGTAAACTATCATGTGTATGCTTTCCTAGATACTCAAGCCCTAAACTC
66 TCTCATAGTGATTGAACAGTAAACTATCATGTGTATGCTTTCCAAGATACTCAAGCCCTAAACTC
*
13961450 GCAAGCCTCTTTGTGCATTCATCCCCTCCCG
131 GCAAGCCTCTTCGTGCATTCATCCCCTCCCG
* *
13961481 ATAACAAATCCTAACAAGACTATATAAGAACATCTAAGCTTTGGACCGTCTGAACCCGAACCAAA
1 ATAACAAATCCTAACAAGACTATATAAGAACATCTAAACTTTAGACCGTCTGAACCCGAACCAAA
* *
13961546 TCTCATAGTGATTGAACAGTAAACTATCATGTGTATGCTTTCCAATATACTCGAGCCCTAAACTC
66 TCTCATAGTGATTGAACAGTAAACTATCATGTGTATGCTTTCCAAGATACTCAAGCCCTAAACTC
* *
13961611 GTAAGCCTCTTCGTGCATTCCTCCCCTC
131 GCAAGCCTCTTCGTGCATTCATCCCCTC
13961639 TGAGTCGAGA
Statistics
Matches: 146, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
161 146 1.00
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (161 bp):
ATAACAAATCCTAACAAGACTATATAAGAACATCTAAACTTTAGACCGTCTGAACCCGAACCAAA
TCTCATAGTGATTGAACAGTAAACTATCATGTGTATGCTTTCCAAGATACTCAAGCCCTAAACTC
GCAAGCCTCTTCGTGCATTCATCCCCTCCCG
Found at i:13969662 original size:11 final size:11
Alignment explanation
Indices: 13969646--13969674 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
13969636 AAATTTAAAT
13969646 TATATTATTTA
1 TATATTATTTA
13969657 TATATTATTTA
1 TATATTATTTA
13969668 T-TATTAT
1 TATATTAT
13969675 CATTATATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (11 bp):
TATATTATTTA
Found at i:13970122 original size:18 final size:18
Alignment explanation
Indices: 13970099--13970133 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
13970089 ATAAAAATAT
13970099 TTAAATTTAATTCGATAC
1 TTAAATTTAATTCGATAC
13970117 TTAAATTTAATTCGATA
1 TTAAATTTAATTCGATA
13970134 AATAAATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.40, C:0.09, G:0.06, T:0.46
Consensus pattern (18 bp):
TTAAATTTAATTCGATAC
Found at i:13970139 original size:18 final size:18
Alignment explanation
Indices: 13970100--13970140 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
13970090 TAAAAATATT
**
13970100 TAAATTTAATTCGATACT
1 TAAATTTAATTCGATAAA
13970118 TAAATTTAATTCGATAAA
1 TAAATTTAATTCGATAAA
13970136 TAAAT
1 TAAAT
13970141 CAAATTATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.41
Consensus pattern (18 bp):
TAAATTTAATTCGATAAA
Found at i:13980158 original size:14 final size:14
Alignment explanation
Indices: 13980139--13980181 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
13980129 TAATTTATTT
13980139 AATAATTTAAAATA
1 AATAATTTAAAATA
*
13980153 AATAATTATAAATTA
1 AATAATT-TAAAATA
*
13980168 TAT-ATTTAAAATA
1 AATAATTTAAAATA
13980181 A
1 A
13980182 TTTTAATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 6 0.25
14 10 0.42
15 8 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATAATTTAAAATA
Found at i:13980891 original size:18 final size:17
Alignment explanation
Indices: 13980849--13980891 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
13980839 TCTAATTATT
*
13980849 TAAAATATAATATAATA
1 TAAAATATAATATAACA
*
13980866 TAATAATATCATATAAACA
1 TAA-AATATAATAT-AACA
13980885 TAAAATA
1 TAAAATA
13980892 AAAAATACGA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 3 0.14
18 13 0.59
19 6 0.27
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAAATATAATATAACA
Found at i:13981136 original size:12 final size:11
Alignment explanation
Indices: 13981102--13981136 Score: 52
Period size: 12 Copynumber: 3.0 Consensus size: 11
13981092 TGATATAATA
13981102 TTAAATTTGAAT
1 TTAAATTTG-AT
13981114 TTAAATTTGAT
1 TTAAATTTGAT
13981125 TTAAAATTTGAT
1 TT-AAATTTGAT
13981137 ACTCGAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 4 0.18
12 18 0.82
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (11 bp):
TTAAATTTGAT
Found at i:13981354 original size:18 final size:19
Alignment explanation
Indices: 13981311--13981355 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
13981301 ATATTTTATA
13981311 AATTAAAATAATAAAAATAT
1 AATT-AAATAATAAAAATAT
* *
13981331 ATTTAAAT-ATAAAAATTT
1 AATTAAATAATAAAAATAT
13981349 AATTAAA
1 AATTAAA
13981356 ATTGTGAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 15 0.68
19 4 0.18
20 3 0.14
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AATTAAATAATAAAAATAT
Found at i:13981357 original size:19 final size:20
Alignment explanation
Indices: 13981311--13981357 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
13981301 ATATTTTATA
13981311 AATTAAAATAATAAAAATAT
1 AATTAAAATAATAAAAATAT
* *
13981331 -ATTTAAAT-ATAAAAATTT
1 AATTAAAATAATAAAAATAT
13981349 AATTAAAAT
1 AATTAAAAT
13981358 TGTGAGTTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AATTAAAATAATAAAAATAT
Found at i:13981460 original size:22 final size:22
Alignment explanation
Indices: 13981435--13981487 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
13981425 TTTAAAATTT
13981435 TTTAAATAATAAT-TAATTTAAA
1 TTTAAATAATAATCTAA-TTAAA
** *
13981457 TTTAAATTTTATTCTAATTAAA
1 TTTAAATAATAATCTAATTAAA
13981479 TTTAAATAA
1 TTTAAATAA
13981488 CTTAAGAATG
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
22 22 0.88
23 3 0.12
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
TTTAAATAATAATCTAATTAAA
Found at i:13989694 original size:45 final size:45
Alignment explanation
Indices: 13989643--13989839 Score: 290
Period size: 45 Copynumber: 4.4 Consensus size: 45
13989633 GAGATGGCGC
13989643 AGGCCTTCCAGTCCTGTTCGCTATCATGTCGAAGAGAAATGGAAT
1 AGGCCTTCCAGTCCTGTTCGCTATCATGTCGAAGAGAAATGGAAT
* * *
13989688 AAGCCTTCCAGTCCTGTTCGCTATCATGCCGAACAGAAATGGAAT
1 AGGCCTTCCAGTCCTGTTCGCTATCATGTCGAAGAGAAATGGAAT
*
13989733 AGGCCTTCCAGTCCTGCTCGCTATCATG-CTGAAGAGAAATGGAAT
1 AGGCCTTCCAGTCCTGTTCGCTATCATGTC-GAAGAGAAATGGAAT
* *
13989778 AGGCCTTCCAGTCCTGTTCGTTA-CTATGTTGAAGAGAAATGGAAT
1 AGGCCTTCCAGTCCTGTTCGCTATC-ATGTCGAAGAGAAATGGAAT
* *
13989823 AGGCCTTCAAGCCCTGT
1 AGGCCTTCCAGTCCTGT
13989840 CCATGAGCGC
Statistics
Matches: 138, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
44 2 0.01
45 136 0.99
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (45 bp):
AGGCCTTCCAGTCCTGTTCGCTATCATGTCGAAGAGAAATGGAAT
Found at i:13998570 original size:3 final size:3
Alignment explanation
Indices: 13998562--13998614 Score: 70
Period size: 3 Copynumber: 16.7 Consensus size: 3
13998552 TCTATATACT
*
13998562 TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTTA TTTA TTA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA TTA -TTA
13998610 TTA TT
1 TTA TT
13998615 TATTCATAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
3 36 0.78
4 10 0.22
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:13998626 original size:18 final size:18
Alignment explanation
Indices: 13998589--13998626 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
13998579 ATTATTATTA
* *
13998589 TTATTATTTATTTATTAT
1 TTATTATTTATTCATAAT
13998607 TTATTATTTATTCATAAT
1 TTATTATTTATTCATAAT
13998625 TT
1 TT
13998627 GTGATTTGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTATTTATTCATAAT
Found at i:14002969 original size:27 final size:27
Alignment explanation
Indices: 14002908--14002963 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
14002898 CTTCCATTGG
14002908 TTACTCTTCAAGCAGAGAGTTGAAAGC
1 TTACTCTTCAAGCAGAGAGTTGAAAGC
14002935 TTACTCTTCAAGC-GCAGAGTTGAAAGC
1 TTACTCTTCAAGCAG-AGAGTTGAAAGC
14002962 TT
1 TT
14002964 TTTCTTAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (27 bp):
TTACTCTTCAAGCAGAGAGTTGAAAGC
Found at i:14011615 original size:7 final size:7
Alignment explanation
Indices: 14011603--14011628 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14011593 AATTATTTTC
14011603 TAAAAAT
1 TAAAAAT
14011610 TAAAAAT
1 TAAAAAT
14011617 TAAAAAT
1 TAAAAAT
14011624 TAAAA
1 TAAAA
14011629 CAAAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
TAAAAAT
Found at i:14011879 original size:18 final size:19
Alignment explanation
Indices: 14011858--14011900 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
14011848 ATATATTATT
*
14011858 TTTATTATATAAA-TTAAA
1 TTTATTAGATAAATTTAAA
* *
14011876 TTTAATGGATAAATTTAAA
1 TTTATTAGATAAATTTAAA
14011895 TTTATT
1 TTTATT
14011901 TTTATAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (19 bp):
TTTATTAGATAAATTTAAA
Found at i:14024545 original size:2 final size:2
Alignment explanation
Indices: 14024538--14024563 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14024528 TTGTTAACTG
14024538 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14024564 GGGGATTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14027874 original size:2 final size:2
Alignment explanation
Indices: 14027867--14027895 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14027857 TTCAAAGTTT
14027867 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14027896 TAGTTTATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14037688 original size:2 final size:2
Alignment explanation
Indices: 14037681--14037723 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
14037671 CTCCGCCCAT
14037681 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
14037723 T
1 T
14037724 TCTTTTTTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:14039175 original size:2 final size:2
Alignment explanation
Indices: 14039168--14039198 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
14039158 AAATAGGTTA
14039168 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
14039199 AATACATTCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:14043859 original size:26 final size:26
Alignment explanation
Indices: 14043822--14043902 Score: 71
Period size: 26 Copynumber: 3.3 Consensus size: 26
14043812 TCGATTGGTT
*
14043822 TTTAAAATTATTTTAAATTTAATAAA
1 TTTAAAAATATTTTAAATTTAATAAA
* * *
14043848 TTTAAAAATATTTAAAATATATTAAA
1 TTTAAAAATATTTTAAATTTAATAAA
* * *
14043874 -ATAATAAT-TTTTAAAATT-A-AAA
1 TTTAAAAATATTTTAAATTTAATAAA
14043896 TTTAAAA
1 TTTAAAA
14043903 TTAATTCAAT
Statistics
Matches: 42, Mismatches: 12, Indels: 5
0.71 0.20 0.08
Matches are distributed among these distances:
22 3 0.07
23 4 0.10
24 7 0.17
25 6 0.14
26 22 0.52
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
TTTAAAAATATTTTAAATTTAATAAA
Found at i:14045192 original size:16 final size:16
Alignment explanation
Indices: 14045171--14045201 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14045161 TATTTAATTT
14045171 ATTTAAAATATAAAAA
1 ATTTAAAATATAAAAA
*
14045187 ATTTAAAATTTAAAA
1 ATTTAAAATATAAAA
14045202 TATAATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTTAAAATATAAAAA
Found at i:14045218 original size:16 final size:16
Alignment explanation
Indices: 14045193--14045225 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14045183 AAAAATTTAA
14045193 AATTTAAAATATAATTT
1 AATTTAAAATAT-ATTT
14045210 AATTT-AAATATATTT
1 AATTTAAAATATATTT
14045225 A
1 A
14045226 TTATTCGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 6 0.38
17 5 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
AATTTAAAATATATTT
Found at i:14045218 original size:23 final size:23
Alignment explanation
Indices: 14045162--14045218 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
14045152 GAATAGTTTT
14045162 ATTTAATTT--ATTTAAAATATA
1 ATTTAATTTAAATTTAAAATATA
**
14045183 A-AAAATTTAAAATTTAAAATATA
1 ATTTAATTT-AAATTTAAAATATA
14045206 ATTTAATTTAAAT
1 ATTTAATTTAAAT
14045219 ATATTTATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
20 5 0.18
21 1 0.04
23 17 0.61
24 5 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTTAATTTAAATTTAAAATATA
Found at i:14051678 original size:5 final size:5
Alignment explanation
Indices: 14051668--14051693 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14051658 AAAACCACTA
14051668 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
14051694 GAGAGGCCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:14053378 original size:29 final size:30
Alignment explanation
Indices: 14053335--14053395 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 30
14053325 TCGAAAAATC
14053335 AATTAATTTGAAATAAAAAATTTAA-AATTT
1 AATTAATTTGAAATAAAAAA-TTAATAATTT
* *
14053365 AATTAATTT-CAATAAAATATTAATAATTT
1 AATTAATTTGAAATAAAAAATTAATAATTT
14053394 AA
1 AA
14053396 ATGATTTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 4 0.14
29 15 0.54
30 9 0.32
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (30 bp):
AATTAATTTGAAATAAAAAATTAATAATTT
Found at i:14064665 original size:105 final size:103
Alignment explanation
Indices: 14064498--14064704 Score: 351
Period size: 105 Copynumber: 2.0 Consensus size: 103
14064488 AGCACCGTAC
* * **
14064498 TTAGTTTGAGGAAAAAGAAGACCCCATGTGACAACCACAGCCAAAGAGCTGGGTGCCAATCCCCG
1 TTAGTTTAAGGAAAAAGAAGACCCCATGTAACAACCACAGCCAAAGAGCCAGGTGCCAATCCCC-
*
14064563 TGTTCTTCGTATATTCAAACTTCAAATCCAACTCTAAACT
65 -GTTCTTCGTATATTCAAACTTCAAATCCAACTCCAAACT
14064603 TTAGTTTAAGGAAAAAGAAGACCCCATGTAACAACCACAGCCAAAGAGCCAGGTGCCAATCCCCG
1 TTAGTTTAAGGAAAAAGAAGACCCCATGTAACAACCACAGCCAAAGAGCCAGGTGCCAATCCCCG
14064668 TTCTTCGTATATTCAAACTTCAAATCCAACTCCAAAC
66 TTCTTCGTATATTCAAACTTCAAATCCAACTCCAAAC
14064705 ACCATGGCGG
Statistics
Matches: 97, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 37 0.38
105 60 0.62
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.22
Consensus pattern (103 bp):
TTAGTTTAAGGAAAAAGAAGACCCCATGTAACAACCACAGCCAAAGAGCCAGGTGCCAATCCCCG
TTCTTCGTATATTCAAACTTCAAATCCAACTCCAAACT
Found at i:14067932 original size:68 final size:68
Alignment explanation
Indices: 14067831--14067958 Score: 195
Period size: 68 Copynumber: 1.9 Consensus size: 68
14067821 ATTTCGCCCA
* *
14067831 AATCTAATCGAATTCAACCAGCTCACCAAAAAATTAGGGATTT-TAAAGGGGTAAAACAACTTCG
1 AATCTAATCAAATTCAACCAGCTCACCAAAAAATTAGCG-TTTCTAAAGGGGTAAAACAACTTCG
14067895 CCTG
65 CCTG
* * *
14067899 AATCTAATCAAATTCAACCCGTTCACCAAAAAATTAGCGTTTCTAAAGGGGTAAAGCAAC
1 AATCTAATCAAATTCAACCAGCTCACCAAAAAATTAGCGTTTCTAAAGGGGTAAAACAAC
14067959 AAAATTTGGG
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
67 3 0.06
68 51 0.94
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.23
Consensus pattern (68 bp):
AATCTAATCAAATTCAACCAGCTCACCAAAAAATTAGCGTTTCTAAAGGGGTAAAACAACTTCGC
CTG
Found at i:14069511 original size:20 final size:21
Alignment explanation
Indices: 14069475--14069526 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 21
14069465 ACCCAAAATT
*
14069475 AATA-AAATCTTATTTTTTAA
1 AATATAAATATTATTTTTTAA
14069495 AATATAAATATTA-TTTTTAA
1 AATATAAATATTATTTTTTAA
14069515 AATATAAATATT
1 AATATAAATATT
14069527 TAAAATATCA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 23 0.77
21 7 0.23
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
AATATAAATATTATTTTTTAA
Found at i:14078434 original size:2 final size:2
Alignment explanation
Indices: 14078427--14078461 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
14078417 TAAATAAATC
14078427 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
14078462 TTCCCAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:14079259 original size:77 final size:78
Alignment explanation
Indices: 14079122--14079276 Score: 285
Period size: 77 Copynumber: 2.0 Consensus size: 78
14079112 CCTCCAAAAT
14079122 CTCAATTGCCTACAAATATTAAAAGATTAAAAACAGAACGACAAATCACAACATTTTATCATCGA
1 CTCAATTGCCTACAAATATTAAAAGATTAAAAACAGAACGACAAATCACAACATTTTATCATCGA
* *
14079187 TAATTACCACTGC
66 CAATTAACACTGC
14079200 CTCAATTGCCTACAAATATTAAAAGATT-AAAACAGAACGACAAATCACAACATTTTATCATCGA
1 CTCAATTGCCTACAAATATTAAAAGATTAAAAACAGAACGACAAATCACAACATTTTATCATCGA
14079264 CAATTAACACTGC
66 CAATTAACACTGC
14079277 TTGGGTCATT
Statistics
Matches: 75, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
77 47 0.63
78 28 0.37
ACGTcount: A:0.45, C:0.22, G:0.08, T:0.25
Consensus pattern (78 bp):
CTCAATTGCCTACAAATATTAAAAGATTAAAAACAGAACGACAAATCACAACATTTTATCATCGA
CAATTAACACTGC
Found at i:14084030 original size:143 final size:144
Alignment explanation
Indices: 14083772--14084059 Score: 515
Period size: 143 Copynumber: 2.0 Consensus size: 144
14083762 TGGCACACAG
* * *
14083772 TGGGATACTAGCACCCGTCTTTACCCACACAAAGAGGGTTGTTGATAATAACTCGGTTATTCAAT
1 TGGGATAATAGCACCCGTCTTTACCCACACAAAGAAGGTTGTTGACAATAACTCGGTTATTCAAT
* * *
14083837 TAATCAAGCAGCCAACTTGAAATTCACGGCTCAAATTGCAAAGAATCTAATAAAATCAA-AACCA
66 TAACCAAGCAGCCAACTCGAAATTCACAGCTCAAATTGCAAAGAATCTAATAAAATCAATAACCA
14083901 ACTAATCTAACTAA
131 ACTAATCTAACTAA
14083915 TGGGATAATAGCACCCGTCTTTACCCACACAAAGAAGGTTGTTGACAATAACTCGGTTATTCAAT
1 TGGGATAATAGCACCCGTCTTTACCCACACAAAGAAGGTTGTTGACAATAACTCGGTTATTCAAT
14083980 TAACCAAGCAGCCAACTCGAAATTCACAGCTCAAATTGCAAAGAATCTAATAAAATCAATAACCA
66 TAACCAAGCAGCCAACTCGAAATTCACAGCTCAAATTGCAAAGAATCTAATAAAATCAATAACCA
14084045 ACTAATCTAACTAA
131 ACTAATCTAACTAA
14084059 T
1 T
14084060 AAAAAGTAAA
Statistics
Matches: 138, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
143 118 0.86
144 20 0.14
ACGTcount: A:0.40, C:0.22, G:0.13, T:0.25
Consensus pattern (144 bp):
TGGGATAATAGCACCCGTCTTTACCCACACAAAGAAGGTTGTTGACAATAACTCGGTTATTCAAT
TAACCAAGCAGCCAACTCGAAATTCACAGCTCAAATTGCAAAGAATCTAATAAAATCAATAACCA
ACTAATCTAACTAA
Found at i:14093573 original size:3 final size:3
Alignment explanation
Indices: 14093565--14093597 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
14093555 TCTTCCTTTT
14093565 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
14093598 AAAACTGGCT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:14094460 original size:20 final size:22
Alignment explanation
Indices: 14094421--14094460 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
14094411 GGCCTTAGCA
*
14094421 AAGCATAATGCTCTGATTGTCG
1 AAGCATAATGCTCAGATTGTCG
14094443 AAGCAT-ATGCT-AGATTGT
1 AAGCATAATGCTCAGATTGT
14094461 TAATAAAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 5 0.29
22 6 0.35
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.33
Consensus pattern (22 bp):
AAGCATAATGCTCAGATTGTCG
Found at i:14103162 original size:26 final size:26
Alignment explanation
Indices: 14103126--14103179 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
14103116 ATCTTGTACA
14103126 AGACTACAAGTATTATGGAAAAATAT
1 AGACTACAAGTATTATGGAAAAATAT
14103152 AGACTACAAGTATTATGGAAAAATAT
1 AGACTACAAGTATTATGGAAAAATAT
14103178 AG
1 AG
14103180 TCATAATAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.50, C:0.07, G:0.17, T:0.26
Consensus pattern (26 bp):
AGACTACAAGTATTATGGAAAAATAT
Found at i:14105056 original size:44 final size:44
Alignment explanation
Indices: 14104993--14105079 Score: 174
Period size: 44 Copynumber: 2.0 Consensus size: 44
14104983 GAACATCACT
14104993 ATTGTAATTTAATCATCCAAATAATTTTATTATATGATAATTTC
1 ATTGTAATTTAATCATCCAAATAATTTTATTATATGATAATTTC
14105037 ATTGTAATTTAATCATCCAAATAATTTTATTATATGATAATTT
1 ATTGTAATTTAATCATCCAAATAATTTTATTATATGATAATTT
14105080 TATCATTTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.48
Consensus pattern (44 bp):
ATTGTAATTTAATCATCCAAATAATTTTATTATATGATAATTTC
Found at i:14105208 original size:25 final size:23
Alignment explanation
Indices: 14105155--14105209 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 23
14105145 ATTATATTTG
14105155 ATATTA-ATAAAAATAGAATATT
1 ATATTATATAAAAATAGAATATT
*
14105177 ATTTTATATAAAATATCA-AATAATT
1 ATATTATATAAAA-AT-AGAAT-ATT
14105202 ATATTATA
1 ATATTATA
14105210 ATAATTACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
22 5 0.19
23 6 0.22
24 5 0.19
25 11 0.41
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
ATATTATATAAAAATAGAATATT
Found at i:14105241 original size:14 final size:15
Alignment explanation
Indices: 14105184--14105262 Score: 56
Period size: 14 Copynumber: 5.3 Consensus size: 15
14105174 ATTATTTTAT
*
14105184 ATAAAATATCAAATA
1 ATAAAATATAAAATA
* * *
14105199 ATTATAT-TATAATA
1 ATAAAATATAAAATA
14105213 ATTACACAATA-AAAATA
1 A-TA-A-AATATAAAATA
14105230 ATAAAAT-TAAAATA
1 ATAAAATATAAAATA
**
14105244 ATAATTTATAAAATA
1 ATAAAATATAAAATA
14105259 ATAA
1 ATAA
14105263 TATTTTATTA
Statistics
Matches: 49, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
14 20 0.41
15 18 0.37
16 3 0.06
17 8 0.16
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAAATATAAAATA
Found at i:14105255 original size:15 final size:14
Alignment explanation
Indices: 14105224--14105266 Score: 59
Period size: 15 Copynumber: 3.0 Consensus size: 14
14105214 TTACACAATA
*
14105224 AAAATAATAAAATT
1 AAAATAATAATATT
*
14105238 AAAATAATAATTTAT
1 AAAATAATAATAT-T
14105253 AAAATAATAATATT
1 AAAATAATAATATT
14105267 TTATTAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (14 bp):
AAAATAATAATATT
Found at i:14105425 original size:18 final size:18
Alignment explanation
Indices: 14105386--14105425 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14105376 TTTTAAAATT
**
14105386 TTAAAAAAATATTTAATC
1 TTAAAAAAATATTTAAAA
*
14105404 TTAAAAATATATTTAAAA
1 TTAAAAAAATATTTAAAA
14105422 TTAA
1 TTAA
14105426 TTCTATATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (18 bp):
TTAAAAAAATATTTAAAA
Found at i:14107101 original size:15 final size:15
Alignment explanation
Indices: 14107083--14107117 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
14107073 AGGAGGCAGA
14107083 GGTGGCAGTAGAGGT
1 GGTGGCAGTAGAGGT
* *
14107098 GGTGGCCGTGGAGGT
1 GGTGGCAGTAGAGGT
14107113 GGTGG
1 GGTGG
14107118 ATTTCGTGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.11, C:0.09, G:0.60, T:0.20
Consensus pattern (15 bp):
GGTGGCAGTAGAGGT
Found at i:14111227 original size:159 final size:164
Alignment explanation
Indices: 14111015--14111316 Score: 533
Period size: 159 Copynumber: 1.9 Consensus size: 164
14111005 CATTTGGGGT
14111015 AAAAAAAAAAATCAATAAAAACAAGGGCCCCTACCTTTGTAATTTCAATTTCATATCAACTCTCA
1 AAAAAAAAAAATCAATAAAAACAAGGGCCCCTACCTTTGTAATTTCAATTTCATATCAACTCTCA
* * *
14111080 TTTCATGAATAATGAAATTTCATGTAGTATAAAATTACAA-AAAA-A-AAAAAAAATTAAGATTC
66 TTTCATGAATAATGAAAATTCATGTAGTACAAAATTACAATAAAAGACAAAAAAAACTAAGATTC
14111142 ATGAA-CAAGACAGCATTTAACCTAGCATTCTCC
131 ATGAACCAAGACAGCATTTAACCTAGCATTCTCC
*
14111175 AAAAAAAAAAATCAATAAAAACAAGGG-GCCTACCTTTGTAATTTCAATTTCATATCAACTCTCA
1 AAAAAAAAAAATCAATAAAAACAAGGGCCCCTACCTTTGTAATTTCAATTTCATATCAACTCTCA
14111239 TTTCATGAATAATGAAAATTCATGTAGTACAAAATTACAATAAAAGACAAAAAAAACTAAGATTC
66 TTTCATGAATAATGAAAATTCATGTAGTACAAAATTACAATAAAAGACAAAAAAAACTAAGATTC
14111304 ATGAACCAAGACA
131 ATGAACCAAGACA
14111317 TGTAATCCTA
Statistics
Matches: 134, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
159 74 0.55
160 31 0.23
161 1 0.01
162 21 0.16
163 7 0.05
ACGTcount: A:0.49, C:0.16, G:0.09, T:0.26
Consensus pattern (164 bp):
AAAAAAAAAAATCAATAAAAACAAGGGCCCCTACCTTTGTAATTTCAATTTCATATCAACTCTCA
TTTCATGAATAATGAAAATTCATGTAGTACAAAATTACAATAAAAGACAAAAAAAACTAAGATTC
ATGAACCAAGACAGCATTTAACCTAGCATTCTCC
Found at i:14119672 original size:18 final size:18
Alignment explanation
Indices: 14119649--14119702 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 18
14119639 ATTAAATTTT
14119649 TAATAAAATATTATAATA
1 TAATAAAATATTATAATA
*
14119667 TAATAAACTA--ATAATA
1 TAATAAAATATTATAATA
14119683 T-ATAACATATATTAATAATA
1 TAATAA-A-ATATT-ATAATA
14119703 CATAATATAG
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 4 0.14
16 8 0.28
17 2 0.07
18 9 0.31
20 6 0.21
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAAAATATTATAATA
Found at i:14119926 original size:24 final size:24
Alignment explanation
Indices: 14119894--14119940 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
14119884 AAACAAATTC
14119894 AAACCAATGTTATTAGAATAAAGT
1 AAACCAATGTTATTAGAATAAAGT
*
14119918 AAACCAATGTTCTTAGAATAAAG
1 AAACCAATGTTATTAGAATAAAG
14119941 AAATTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.49, C:0.11, G:0.13, T:0.28
Consensus pattern (24 bp):
AAACCAATGTTATTAGAATAAAGT
Found at i:14120415 original size:28 final size:29
Alignment explanation
Indices: 14120383--14120444 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 29
14120373 TTTTTTAAAA
* *
14120383 AATTTTACATAATCTTTTA-ATTGTTTAT
1 AATTTTAAATAATATTTTATATTGTTTAT
* *
14120411 AATTTTAAATAATATTTTATATTTTTTGT
1 AATTTTAAATAATATTTTATATTGTTTAT
14120440 AATTT
1 AATTT
14120445 ATTATAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 17 0.59
29 12 0.41
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.60
Consensus pattern (29 bp):
AATTTTAAATAATATTTTATATTGTTTAT
Found at i:14121686 original size:30 final size:29
Alignment explanation
Indices: 14121600--14121692 Score: 82
Period size: 30 Copynumber: 3.2 Consensus size: 29
14121590 TTGTTAAATT
* * *
14121600 TTTTAGATTTTTTTTTGAATTTTCATAATC
1 TTTTAGATTTTTTTAT-AATTTTAATAATA
*
14121630 TTTTA-A-TTGTTTATAATTTTAAATAATA
1 TTTTAGATTTTTTTATAATTTT-AATAATA
* * *
14121658 TTTTAGATTTTTTTGTAATTTATTATAATT
1 TTTTAGATTTTTTTATAATTT-TAATAATA
14121688 TTTTA
1 TTTTA
14121693 AATTATTTAA
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
27 6 0.12
28 16 0.31
29 2 0.04
30 26 0.51
31 1 0.02
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.63
Consensus pattern (29 bp):
TTTTAGATTTTTTTATAATTTTAATAATA
Found at i:14121749 original size:15 final size:17
Alignment explanation
Indices: 14121729--14121760 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
14121719 ATTTAAATTT
14121729 TTTTAG-ATT-TTTTAA
1 TTTTAGAATTATTTTAA
14121744 TTTTAGAATTATTTTAA
1 TTTTAGAATTATTTTAA
14121761 ATTCTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 3 0.20
17 6 0.40
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
TTTTAGAATTATTTTAA
Found at i:14122536 original size:24 final size:24
Alignment explanation
Indices: 14122482--14122536 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
14122472 ATATTTTATA
* *
14122482 AATAAAATAAACCATTGTTATTAG
1 AATAAAGTAAACCAATGTTATTAG
*
14122506 AATAAAGTAAACCAATGTTCTTAG
1 AATAAAGTAAACCAATGTTATTAG
14122530 AATAAAG
1 AATAAAG
14122537 CAAGTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.51, C:0.09, G:0.11, T:0.29
Consensus pattern (24 bp):
AATAAAGTAAACCAATGTTATTAG
Found at i:14125144 original size:32 final size:31
Alignment explanation
Indices: 14125106--14125185 Score: 81
Period size: 32 Copynumber: 2.5 Consensus size: 31
14125096 AATTTTATTT
14125106 ATTATAATATTTATAAATATATTAAATTTAA
1 ATTATAATATTTATAAATATATTAAATTTAA
* * * *
14125137 ATTTATAATGA-TGATATATTTATTAATTTTAA
1 A-TTATAAT-ATTTATAAATATATTAAATTTAA
*
14125169 ATTAAAATTATTTATAA
1 ATTATAA-TATTTATAA
14125186 TAACTAAACT
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
31 7 0.18
32 30 0.79
33 1 0.03
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (31 bp):
ATTATAATATTTATAAATATATTAAATTTAA
Found at i:14128820 original size:18 final size:19
Alignment explanation
Indices: 14128799--14128842 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14128789 ATAATTAAAT
*
14128799 TTATTTAATATAAT-AATA
1 TTATTTAATAAAATGAATA
14128817 TTATTTTAATAAAATGAATA
1 TTA-TTTAATAAAATGAATA
14128837 TT-TTTA
1 TTATTTA
14128843 GTCTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 7 0.30
19 10 0.43
20 6 0.26
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TTATTTAATAAAATGAATA
Found at i:14128822 original size:22 final size:21
Alignment explanation
Indices: 14128768--14128842 Score: 52
Period size: 20 Copynumber: 3.7 Consensus size: 21
14128758 CCAAATTGTA
* *
14128768 AATAATATT-TTTATTATTGT
1 AATAATATTATTTATTAATAT
*
14128788 AATAAT-TAAATTTATTTAATAT
1 AATAATAT-TATTTA-TTAATAT
*
14128810 AATAATATTA-TT-TTAATAA
1 AATAATATTATTTATTAATAT
14128829 AATGAATATT-TTTA
1 AAT-AATATTATTTA
14128843 GTCTTTATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 13
0.70 0.08 0.21
Matches are distributed among these distances:
19 10 0.23
20 14 0.33
21 6 0.14
22 12 0.28
23 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (21 bp):
AATAATATTATTTATTAATAT
Found at i:14128996 original size:62 final size:61
Alignment explanation
Indices: 14128925--14129068 Score: 143
Period size: 62 Copynumber: 2.3 Consensus size: 61
14128915 TTAATGATAA
* * *
14128925 ATATAAATAAATAATATTTTATTA-TAATTTAATAATAGATACTT-TTAATTTAAAATATAATT
1 ATATTAATAAATAATATTTT-TTACTAATTTAATAATAAATA-TTACT-ATTTAAAATATAATT
* * *
14128987 AT-TCTAATAATATAA-ATATTTTTACTATTTTAATAATAAATATTACTATTTTAAATATTATT
1 ATAT-TAATAA-ATAATAT-TTTTTACTAATTTAATAATAAATATTACTATTTAAAATATAATT
14129049 ATATTAATAAAATAATATTT
1 ATATTAAT-AAATAATATTT
14129069 AAAGAATACT
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
61 1 0.01
62 39 0.57
63 28 0.41
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.49
Consensus pattern (61 bp):
ATATTAATAAATAATATTTTTTACTAATTTAATAATAAATATTACTATTTAAAATATAATT
Found at i:14129303 original size:16 final size:16
Alignment explanation
Indices: 14129275--14129307 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14129265 AATTATGTCA
14129275 ATATTATTTAAAAAAT
1 ATATTATTTAAAAAAT
14129291 ATATT-TTTCAAAAAAT
1 ATATTATTT-AAAAAAT
14129307 A
1 A
14129308 ACGAAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.19
16 13 0.81
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATTATTTAAAAAAT
Found at i:14129785 original size:19 final size:21
Alignment explanation
Indices: 14129763--14129813 Score: 63
Period size: 18 Copynumber: 2.6 Consensus size: 21
14129753 AAATAAATTT
*
14129763 AAATTTTTTTAATT-TTTT-A
1 AAATTTTTTGAATTATTTTAA
*
14129782 AAA-TTTTAGAATTATTTTAA
1 AAATTTTTTGAATTATTTTAA
14129802 AAATTTTTTGAA
1 AAATTTTTTGAA
14129814 ATCATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 8 0.31
19 7 0.27
20 4 0.15
21 7 0.27
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (21 bp):
AAATTTTTTGAATTATTTTAA
Found at i:14130830 original size:110 final size:116
Alignment explanation
Indices: 14130545--14130925 Score: 307
Period size: 117 Copynumber: 3.4 Consensus size: 116
14130535 CTTAATTGAT
* ** * ***
14130545 GATATTTTATAAATAAAATAAATAATCAATTAAGTCATAAAAAAATGGATC-AT--TTAAAGTAT
1 GATATTTTGTAAATAAAATAAATAATCAATTAAGTCATAAAAAAATACATCAATAATTTAAGGCG
** * *
14130607 TTTTATGCAAAAACTCCTAAAATGATCTTTTTATTTTTGTTACACCTTAGTTGAA
66 TTTT-TG-AAATGCT--TTAAATGATCTTTTTATTTTTGTTACACCTTAGTTCAA
* ** **
14130662 GATATTTTGTAAATAAAATAAATAATCACTTAAGTTGTAAAAAAATACATTGATAATTTAAGGCG
1 GATATTTTGTAAATAAAATAAATAATCAATTAAGTCATAAAAAAATACATCAATAATTTAAGGCG
* *
14130727 TTTTTGAAATGCTTTAAATGATCTTTTT-TTTCTT-TTACGCCTTAGTTCAT
66 TTTTTGAAATGCTTTAAATGATCTTTTTATTT-TTGTTACACCTTAGTTCAA
* *
14130777 GATA-TTT-TATATAAAA-AAA-AATCAATTAAGTCAT-AAAAAATACATCAATAATTTAAGGTG
1 GATATTTTGTAAATAAAATAAATAATCAATTAAGTCATAAAAAAATACATCAATAATTTAAGGCG
* * * **
14130837 TTTCT---AT-C----AATGATCATTTTATTTTTTTTATGCCTTAGTT-AA
66 TTTTTGAAATGCTTTAAATGATCTTTTTATTTTTGTTACACCTTAGTTCAA
* * **
14130879 CGATATTTTATAAATAAAA-AAATAATCAATTGAGTTGTAAAAAAATA
1 -GATATTTTGTAAATAAAATAAATAATCAATTAAGTCATAAAAAAATA
14130926 AATTGATCAT
Statistics
Matches: 221, Mismatches: 32, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
102 14 0.06
103 19 0.09
104 3 0.01
105 11 0.05
106 13 0.06
107 10 0.05
110 27 0.12
111 12 0.05
112 3 0.01
113 8 0.04
114 3 0.01
115 20 0.09
116 16 0.07
117 44 0.20
118 7 0.03
119 2 0.01
120 9 0.04
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (116 bp):
GATATTTTGTAAATAAAATAAATAATCAATTAAGTCATAAAAAAATACATCAATAATTTAAGGCG
TTTTTGAAATGCTTTAAATGATCTTTTTATTTTTGTTACACCTTAGTTCAA
Found at i:14132936 original size:20 final size:20
Alignment explanation
Indices: 14132911--14132954 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
14132901 CCTGTAACGT
14132911 CAATATCTCCTTTATAGCGG
1 CAATATCTCCTTTATAGCGG
*
14132931 CAATATCTCCTTTATAGCGT
1 CAATATCTCCTTTATAGCGG
14132951 CAAT
1 CAAT
14132955 TGTCACATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.36
Consensus pattern (20 bp):
CAATATCTCCTTTATAGCGG
Found at i:14133041 original size:105 final size:103
Alignment explanation
Indices: 14132848--14133041 Score: 289
Period size: 105 Copynumber: 1.9 Consensus size: 103
14132838 AATGCACATG
*
14132848 CAATTGTCACATGCCCACCGAGACCGACCCCCGTTTCACAATTCGGCATCAGCCCTGTAACGTCA
1 CAATTGTCACATGCCCACAGAGACCGACCCCCGTTTCACAATTCGGCATCAGCCCTGTAACGTCA
*
14132913 ATATCTCCTTTATAGCGGCAATATCTCCTTTATAGCGT
66 ATATCTCCTTTATAGCGACAATATCTCCTTTATAGCGT
* * * *
14132951 CAATTGTCACATGCCCACTGAGAGACCGACCCCCGTTTCATAATTCTGCATCAGCCTTGTAATGT
1 CAATTGTCACATGCCCAC--AGAGACCGACCCCCGTTTCACAATTCGGCATCAGCCCTGTAACGT
* * *
14133016 TAATATCTCCTTTATTGCGATAATAT
64 CAATATCTCCTTTATAGCGACAATAT
14133042 GATAGTAGGT
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
103 18 0.22
105 62 0.77
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.30
Consensus pattern (103 bp):
CAATTGTCACATGCCCACAGAGACCGACCCCCGTTTCACAATTCGGCATCAGCCCTGTAACGTCA
ATATCTCCTTTATAGCGACAATATCTCCTTTATAGCGT
Found at i:14135146 original size:14 final size:15
Alignment explanation
Indices: 14135120--14135150 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
14135110 TATTTTACAA
14135120 ATAAAAAATTAAATT
1 ATAAAAAATTAAATT
14135135 ATAAAAAA-TAAATT
1 ATAAAAAATTAAATT
14135149 AT
1 AT
14135151 TTAAGGTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
ATAAAAAATTAAATT
Found at i:14135604 original size:20 final size:19
Alignment explanation
Indices: 14135559--14135611 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
14135549 ATATTAATTT
*
14135559 TGATGAAATTAAAA-ATAA
1 TGATAAAATTAAAATATAA
* *
14135577 TAACAAAATTAAAATTATAA
1 TGATAAAATTAAAA-TATAA
14135597 TGATAAAATTAAAAT
1 TGATAAAATTAAAAT
14135612 CAATTATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
18 11 0.39
19 1 0.04
20 16 0.57
ACGTcount: A:0.62, C:0.02, G:0.06, T:0.30
Consensus pattern (19 bp):
TGATAAAATTAAAATATAA
Found at i:14137700 original size:15 final size:17
Alignment explanation
Indices: 14137680--14137714 Score: 56
Period size: 15 Copynumber: 2.2 Consensus size: 17
14137670 TTTAAGATTT
14137680 TTTTTTAATT-T-CATA
1 TTTTTTAATTATACATA
14137695 TTTTTTAATTATACATA
1 TTTTTTAATTATACATA
14137712 TTT
1 TTT
14137715 AAGTTAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.56
16 1 0.06
17 7 0.39
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTTTTAATTATACATA
Found at i:14138666 original size:10 final size:10
Alignment explanation
Indices: 14138641--14138776 Score: 50
Period size: 10 Copynumber: 14.0 Consensus size: 10
14138631 AATTTTGTTC
*
14138641 AATTTTTTAG
1 AATTTTTTAA
*
14138651 ATTTTTTTAA
1 AATTTTTTAA
* *
14138661 AA-TTTTCAT
1 AATTTTTTAA
*
14138670 AATCTTTT--
1 AATTTTTTAA
* *
14138678 AATTGTTTAT
1 AATTTTTTAA
*
14138688 AA-TTTTAAA
1 AATTTTTTAA
* *
14138697 TAATATTTTAG
1 -AATTTTTTAA
*
14138708 A-TTTTTTGA
1 AATTTTTTAA
* *
14138717 AATTTATTAT
1 AATTTTTTAA
*
14138727 AATTTTTT-T
1 AATTTTTTAA
*
14138736 AATTATTTAA
1 AATTTTTTAA
*
14138746 GATTTTTTAAA
1 AATTTTTT-AA
**
14138757 AAAATTTTAA
1 AATTTTTTAA
14138767 AATTTTTTAA
1 AATTTTTTAA
14138777 TTTAAGAATT
Statistics
Matches: 87, Mismatches: 31, Indels: 16
0.65 0.23 0.12
Matches are distributed among these distances:
8 6 0.07
9 25 0.29
10 45 0.52
11 11 0.13
ACGTcount: A:0.37, C:0.01, G:0.04, T:0.58
Consensus pattern (10 bp):
AATTTTTTAA
Found at i:14138722 original size:28 final size:27
Alignment explanation
Indices: 14138645--14138722 Score: 68
Period size: 28 Copynumber: 2.7 Consensus size: 27
14138635 TTGTTCAATT
** *
14138645 TTTTAGATTTTTTTAAAATTTTCATAATC
1 TTTTAGA-TTTTTT-AAATTTAAATAATA
*
14138674 TTTTA-ATTGTTTATAATTTTAAATAATA
1 TTTTAGATT-TTT-TAAATTTAAATAATA
14138702 TTTTAGATTTTTTGAAATTTA
1 TTTTAGATTTTTT-AAATTTA
14138723 TTATAATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
27 3 0.08
28 28 0.70
29 9 0.22
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (27 bp):
TTTTAGATTTTTTAAATTTAAATAATA
Found at i:14138734 original size:29 final size:27
Alignment explanation
Indices: 14138641--14138751 Score: 82
Period size: 29 Copynumber: 3.9 Consensus size: 27
14138631 AATTTTGTTC
*
14138641 AATTTTTTAGATTTTTTTAAAATTTTCAT
1 AATTTTTTAGA-TTTTTT-AAATTTTAAT
* *
14138670 AATCTTTTA-ATTGTTTATAATTTTAAAT
1 AATTTTTTAGATTTTTTA-AATTTT-AAT
* *
14138698 AATATTTTAGATTTTTTGAAATTTATTAT
1 AATTTTTTAGATTTTTT-AAATTT-TAAT
*
14138727 AATTTTTTTA-ATTATTTAAGATTTT
1 AA-TTTTTTAGATTTTTTAA-ATTTT
14138752 TTAAAAAAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
26 1 0.01
27 11 0.16
28 14 0.21
29 33 0.49
30 8 0.12
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (27 bp):
AATTTTTTAGATTTTTTAAATTTTAAT
Found at i:14140149 original size:19 final size:19
Alignment explanation
Indices: 14140125--14140161 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
14140115 CGTCAATATG
14140125 TCCTTTATAGCGACAAGAA
1 TCCTTTATAGCGACAAGAA
14140144 TCCTTTATAGCGACAAGA
1 TCCTTTATAGCGACAAGA
14140162 TGATAGTAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (19 bp):
TCCTTTATAGCGACAAGAA
Found at i:14141238 original size:25 final size:26
Alignment explanation
Indices: 14141195--14141243 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
14141185 TGTTATATTA
14141195 TTTTTACTTTGTTACTTTTTTCATTT
1 TTTTTACTTTGTTACTTTTTTCATTT
* *
14141221 TTTTTA-TTTTTTATTTTTTTCAT
1 TTTTTACTTTGTTACTTTTTTCAT
14141244 CCTTCTTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.12, C:0.08, G:0.02, T:0.78
Consensus pattern (26 bp):
TTTTTACTTTGTTACTTTTTTCATTT
Found at i:14141801 original size:17 final size:16
Alignment explanation
Indices: 14141779--14141830 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
14141769 AAATTATTTT
14141779 TAAATACAACATAAATA
1 TAAATA-AACATAAATA
* *
14141796 TAAATAAAACCTATATA
1 TAAAT-AAACATAAATA
14141813 TATAATAAA-ATAAATA
1 TA-AATAAACATAAATA
14141829 TA
1 TA
14141831 TTAAGCATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
16 7 0.24
17 18 0.62
18 4 0.14
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (16 bp):
TAAATAAACATAAATA
Found at i:14141989 original size:32 final size:32
Alignment explanation
Indices: 14141952--14142016 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 32
14141942 ATTTTATTTA
14141952 TTATAAT-ATTCATAAATATATTAAATTTAAAT
1 TTATAATGA-TCATAAATATATTAAATTTAAAT
* * *
14141984 TTATAATGATGATAAATTTATTAATTTTAAAT
1 TTATAATGATCATAAATATATTAAATTTAAAT
14142016 T
1 T
14142017 AAATTATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 28 0.97
33 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (32 bp):
TTATAATGATCATAAATATATTAAATTTAAAT
Found at i:14142825 original size:15 final size:16
Alignment explanation
Indices: 14142805--14142848 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 16
14142795 TTTTGAATAT
14142805 TTATTTATTTTATTA-
1 TTATTTATTTTATTAC
*
14142820 TTATTTATTTCATTAC
1 TTATTTATTTTATTAC
14142836 TT-TTTATTTTATT
1 TTATTTATTTTATT
14142849 CCTTTATTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 24 0.92
16 2 0.08
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.73
Consensus pattern (16 bp):
TTATTTATTTTATTAC
Found at i:14145314 original size:32 final size:32
Alignment explanation
Indices: 14145277--14145341 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 32
14145267 ATTTTATTTA
14145277 TTATAAT-ATTCATAAATATATTAAATTTAAAT
1 TTATAATGA-TCATAAATATATTAAATTTAAAT
* * * *
14145309 TTATAATGATGATATATTTATTAATTTTAAAT
1 TTATAATGATCATAAATATATTAAATTTAAAT
14145341 T
1 T
14145342 AAAATTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
32 27 0.96
33 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.51
Consensus pattern (32 bp):
TTATAATGATCATAAATATATTAAATTTAAAT
Found at i:14146032 original size:83 final size:83
Alignment explanation
Indices: 14145872--14146029 Score: 273
Period size: 83 Copynumber: 1.9 Consensus size: 83
14145862 AATGCACATG
* *
14145872 CAATTGTCACATGCCCACCGAGACCGACCCCCGTTTCACAATTCTGCATCAGCCCTGTAACGTTA
1 CAATTGCCACATGCCCACCGAGACCGACCCCCGTTTCACAATTCTGCATCAGCCCTGTAACGTCA
14145937 ATATCTTCTTTATAGCGT
66 ATATCTTCTTTATAGCGT
* *
14145955 CAATTGCCACATGCCCACTGAGACCGACCCCCGTTTCACAATTCTGCATCAGCCTTGTAACGTCA
1 CAATTGCCACATGCCCACCGAGACCGACCCCCGTTTCACAATTCTGCATCAGCCCTGTAACGTCA
14146020 ATATC-TCTTT
66 ATATCTTCTTT
14146030 TATTGCGACA
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
82 5 0.07
83 66 0.93
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.28
Consensus pattern (83 bp):
CAATTGCCACATGCCCACCGAGACCGACCCCCGTTTCACAATTCTGCATCAGCCCTGTAACGTCA
ATATCTTCTTTATAGCGT
Found at i:14146553 original size:4 final size:4
Alignment explanation
Indices: 14146546--14146575 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
14146536 TAGAACCCTT
14146546 AATA AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
14146576 ACACATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:14146738 original size:15 final size:14
Alignment explanation
Indices: 14146714--14146746 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
14146704 TTATTTTAAA
14146714 TTTTATTTAATTAT
1 TTTTATTTAATTAT
14146728 TTTTCATTTAATTAT
1 TTTT-ATTTAATTAT
14146743 TTTT
1 TTTT
14146747 TTTGTTTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTATTTAATTAT
Found at i:14147082 original size:83 final size:83
Alignment explanation
Indices: 14146940--14147100 Score: 279
Period size: 83 Copynumber: 1.9 Consensus size: 83
14146930 AATGCACATG
*
14146940 CAATTGTCACATGCCCACCGAGATCGACCCCCGTTTCACAATTCTGCATCAGTCCTGTAACGTCA
1 CAATTGTCACATGCCCACCGAGACCGACCCCCGTTTCACAATTCTGCATCAGTCCTGTAACGTCA
14147005 ATATCTCCTTTATAGCAT
66 ATATCTCCTTTATAGCAT
*
14147023 CAATTGTCACATGCCCACTGAGACCGACCCCCGTTTCACAATTCTGCATCAG-CCTTGTAACGTC
1 CAATTGTCACATGCCCACCGAGACCGACCCCCGTTTCACAATTCTGCATCAGTCC-TGTAACGTC
*
14147087 AATATTTCCTTTAT
65 AATATCTCCTTTAT
14147101 TGCGACAACA
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
82 2 0.03
83 72 0.97
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (83 bp):
CAATTGTCACATGCCCACCGAGACCGACCCCCGTTTCACAATTCTGCATCAGTCCTGTAACGTCA
ATATCTCCTTTATAGCAT
Found at i:14147654 original size:83 final size:83
Alignment explanation
Indices: 14147512--14147672 Score: 270
Period size: 83 Copynumber: 1.9 Consensus size: 83
14147502 AATGCACATG
* *
14147512 CAATTGTCACATGCCCACCGAGATCGACCCCCGTTTCACAATTCTGCATCAGTCCTGTAATGTCA
1 CAATTGTCACATGCCCACCGAGACCGACCCCCGTTTCACAATTCTGCATCAGTCCTGTAACGTCA
*
14147577 ATATCTCCTTTATAGCAT
66 ATATCTCATTTATAGCAT
*
14147595 CAATTGTCACATGCCCACTGAGACCGACCCCCGTTTCACAATTCTGCATCAG-CCTTGTAACGTC
1 CAATTGTCACATGCCCACCGAGACCGACCCCCGTTTCACAATTCTGCATCAGTCC-TGTAACGTC
14147659 AATATCTCATTTAT
65 AATATCTCATTTAT
14147673 TGTGACAACA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
82 2 0.03
83 71 0.97
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (83 bp):
CAATTGTCACATGCCCACCGAGACCGACCCCCGTTTCACAATTCTGCATCAGTCCTGTAACGTCA
ATATCTCATTTATAGCAT
Found at i:14147919 original size:575 final size:575
Alignment explanation
Indices: 14146440--14148024 Score: 2756
Period size: 572 Copynumber: 2.8 Consensus size: 575
14146430 AATGCACATG
14146440 CAATTGTCACATGCCCACTGAGACCGA-CCCCGTTTCACAATTCTGCATCAGCCTTGTAACGTCA
1 CAATTGTCACATGCCCACTGAGACCGACCCCCGTTTCACAATTCTGCATCAGCCTTGTAACGTCA
* * *
14146504 ATATCTCTTTTATTGCCACAACAT-ATAGTAGGTAGAACCCTTAATAAATAAATAAATAAATAAA
66 ATATCTCATTTATTGCGACAACATGATAGTAGGTAG-AGCC----T---T-AATAAATAAATAAA
*
14146568 TAAATAAAACACATAAATATTTATTAAAAAATTATTTTAAAATAATCATATTAATTTTTTTAATA
122 TAAATAAAACACATAAATATTTATTAAAAAATTATTTTAAAATAATCATATTAATTCTTTTAATA
*
14146633 AATTTTATAAATATATATTACGATTAAGGTCGAAATAAAAATATTTTTAAAATTTAAAATATAAT
187 AATTTTATAAATATATATTACGATTAAAGTCGAAATAAAAATATTTTTAAAATTTAAAATATAAT
* * **
14146698 ATTTAATTATTTTAAATTTTATTTAATTATTTTTCATTTAATTATTTTTTTTGTTTCGTTTTATT
252 ATTTAATTATTTTAAAATTTATTTAATTATTTTTTATTTCGTTATTTTTTTTGTTTCGTTTTATT
14146763 TGCTTTTTTTTTTTTTCATCTCAATTTATATTCTCTTTTTAAAAATTTATTCTCCCTCTAAAACC
317 TGC-TTTTTTTTTTTTCATCTCAATTTATATTCTCTTTTTAAAAATTTATTCTCCCTCTAAAACC
* *
14146828 AAACAAATTCTCTCTAACAGTACGATTTAGTTTTGTTTGATTTTAGATAATTAGTTGGCAAGTAT
381 AAACAAATTCTCTCTAACAGTATGATTTAGTTTTGTTTGATTTTAGATAATTAATTGGCAAGTAT
14146893 AACTGTGGGTTCACCGTCAACGATCTTTTCTTTTTTAAATGCACATGCAATTGTCACATGCCCAC
446 AACTGTGGGTTCACCGTCAACGATCTTTTCTTTTTTAAATGCACATGCAATTGTCACATGCCCAC
14146958 CGAGATCGACCCCCGTTTCACAATTCTGCATCAGTCCTGTAACGTCAATATCTCCTTTATAGCAT
511 CGAGATCGACCCCCGTTTCACAATTCTGCATCAGTCCTGTAACGTCAATATCTCCTTTATAGCAT
14147023 CAATTGTCACATGCCCACTGAGACCGACCCCCGTTTCACAATTCTGCATCAGCCTTGTAACGTCA
1 CAATTGTCACATGCCCACTGAGACCGACCCCCGTTTCACAATTCTGCATCAGCCTTGTAACGTCA
* * *
14147088 ATATTTCCTTTATTGCGACAACATGATAGTAGGTAGAGCCCT--T-AATAAATAAATAAATAAAA
66 ATATCTCATTTATTGCGACAACATGATAGTAGGTAGAGCCTTAATAAATAAATAAATAAATAAAA
*
14147150 CACATAAATATTTATTAAAAATTTATTTTAAAATAATCATATTAATTCTTTTAATAAATTTTATA
131 CACATAAATATTTATTAAAAAATTATTTTAAAATAATCATATTAATTCTTTTAATAAATTTTATA
* *
14147215 AATATATATTACGATTAAAGTCGAAATAAAAATATTTTTAAGATTTAAAATATGATATTTAATTA
196 AATATATATTACGATTAAAGTCGAAATAAAAATATTTTTAAAATTTAAAATATAATATTTAATTA
* *
14147280 TTTTAAAATTTATTTAATTATTTTTTATTTCGTTACTTTTTTTGTTTCATTTTATTTGCTTTTTT
261 TTTTAAAATTTATTTAATTATTTTTTATTTCGTTATTTTTTTTGTTTCGTTTTATTTGCTTTTTT
*
14147345 TTTTTTCATCTCAATTTATATTCTCTTTTTAAAAATTTATTCTCCTTCTAAAACCAAACAAATTC
326 TTTTTTCATCTCAATTTATATTCTCTTTTTAAAAATTTATTCTCCCTCTAAAACCAAACAAATTC
*
14147410 TCACTAACAGTATGATTTAGTTTTGTTTGATTTTAGATAATTAATTGGCAAGTATAACTGTGGGT
391 TCTCTAACAGTATGATTTAGTTTTGTTTGATTTTAGATAATTAATTGGCAAGTATAACTGTGGGT
14147475 TCACCGTCAACGATCTTTTCTTTTTTAAATGCACATGCAATTGTCACATGCCCACCGAGATCGAC
456 TCACCGTCAACGATCTTTTCTTTTTTAAATGCACATGCAATTGTCACATGCCCACCGAGATCGAC
*
14147540 CCCCGTTTCACAATTCTGCATCAGTCCTGTAATGTCAATATCTCCTTTATAGCAT
521 CCCCGTTTCACAATTCTGCATCAGTCCTGTAACGTCAATATCTCCTTTATAGCAT
14147595 CAATTGTCACATGCCCACTGAGACCGACCCCCGTTTCACAATTCTGCATCAGCCTTGTAACGTCA
1 CAATTGTCACATGCCCACTGAGACCGACCCCCGTTTCACAATTCTGCATCAGCCTTGTAACGTCA
* *
14147660 ATATCTCATTTATTGTGACAACATGATAG-GGGTAGAGTCCTTAATAAATAAATAAATAAATAAA
66 ATATCTCATTTATTGCGACAACATGATAGTAGGTAGAG-CCTTAATAAATAAATAAATAAATAAA
14147724 ACACATAAATATTTATTAAAAAATTATTTTAAAATAATCATATTAATTCTTTTAATAAATTTTAT
130 ACACATAAATATTTATTAAAAAATTATTTTAAAATAATCATATTAATTCTTTTAATAAATTTTAT
*
14147789 AAATATATATTACGATTAAAGTCGAAATAAAAATAATTTTAAAATTTAAAATATAATATTTAATT
195 AAATATATATTACGATTAAAGTCGAAATAAAAATATTTTTAAAATTTAAAATATAATATTTAATT
* *
14147854 ATTTTAAAATTTATTTAATTATTTTTTATTTCGTTATTTTTTTTGTTTTGTTTTATTTAC---TT
260 ATTTTAAAATTTATTTAATTATTTTTTATTTCGTTATTTTTTTTGTTTCGTTTTATTTGCTTTTT
14147916 TTTTTTTCATCTCAATTTATATTCTCTTTTTAAAAATTTATTCTCCCTCTAAAACCAAACAAATT
325 TTTTTTTCATCTCAATTTATATTCTCTTTTTAAAAATTTATTCTCCCTCTAAAACCAAACAAATT
*
14147981 CTCTCTAACAGTATGATTTAATTTTGTTTGATTTTAGATAATTA
390 CTCTCTAACAGTATGATTTAGTTTTGTTTGATTTTAGATAATTA
14148025 GTTTACTTTT
Statistics
Matches: 959, Mismatches: 37, Indels: 23
0.94 0.04 0.02
Matches are distributed among these distances:
571 7 0.01
572 453 0.47
573 197 0.21
574 2 0.00
575 200 0.21
577 1 0.00
583 27 0.03
584 61 0.06
585 11 0.01
ACGTcount: A:0.34, C:0.15, G:0.09, T:0.42
Consensus pattern (575 bp):
CAATTGTCACATGCCCACTGAGACCGACCCCCGTTTCACAATTCTGCATCAGCCTTGTAACGTCA
ATATCTCATTTATTGCGACAACATGATAGTAGGTAGAGCCTTAATAAATAAATAAATAAATAAAA
CACATAAATATTTATTAAAAAATTATTTTAAAATAATCATATTAATTCTTTTAATAAATTTTATA
AATATATATTACGATTAAAGTCGAAATAAAAATATTTTTAAAATTTAAAATATAATATTTAATTA
TTTTAAAATTTATTTAATTATTTTTTATTTCGTTATTTTTTTTGTTTCGTTTTATTTGCTTTTTT
TTTTTTCATCTCAATTTATATTCTCTTTTTAAAAATTTATTCTCCCTCTAAAACCAAACAAATTC
TCTCTAACAGTATGATTTAGTTTTGTTTGATTTTAGATAATTAATTGGCAAGTATAACTGTGGGT
TCACCGTCAACGATCTTTTCTTTTTTAAATGCACATGCAATTGTCACATGCCCACCGAGATCGAC
CCCCGTTTCACAATTCTGCATCAGTCCTGTAACGTCAATATCTCCTTTATAGCAT
Found at i:14150616 original size:18 final size:19
Alignment explanation
Indices: 14150595--14150638 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14150585 ATAATTAAAT
*
14150595 TTATTTAATATAAT-AATA
1 TTATTTAATAAAATGAATA
14150613 TTATTTTAATAAAATGAATA
1 TTA-TTTAATAAAATGAATA
14150633 TT-TTTA
1 TTATTTA
14150639 GTCGTCATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 7 0.30
19 10 0.43
20 6 0.26
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (19 bp):
TTATTTAATAAAATGAATA
Found at i:14150618 original size:22 final size:21
Alignment explanation
Indices: 14150564--14150638 Score: 52
Period size: 20 Copynumber: 3.7 Consensus size: 21
14150554 CCATATTGTA
* *
14150564 AATAATATT-TTTATTATTGT
1 AATAATATTATTTATTAATAT
*
14150584 AATAAT-TAAATTTATTTAATAT
1 AATAATAT-TATTTA-TTAATAT
*
14150606 AATAATATTA-TT-TTAATAA
1 AATAATATTATTTATTAATAT
14150625 AATGAATATT-TTTA
1 AAT-AATATTATTTA
14150639 GTCGTCATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 13
0.70 0.08 0.21
Matches are distributed among these distances:
19 10 0.23
20 14 0.33
21 6 0.14
22 12 0.28
23 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (21 bp):
AATAATATTATTTATTAATAT
Found at i:14152123 original size:19 final size:20
Alignment explanation
Indices: 14152087--14152128 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
14152077 ATATAAGTAT
*
14152087 AAATATGAAATATAATAA-A
1 AAATACGAAATATAATAACA
14152106 AAATACGAAATA-ATATAACA
1 AAATACGAAATATA-ATAACA
14152126 AAA
1 AAA
14152129 AAAAGAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 15 0.75
20 4 0.20
ACGTcount: A:0.69, C:0.05, G:0.05, T:0.21
Consensus pattern (20 bp):
AAATACGAAATATAATAACA
Done.