Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 72 of 77
Found at i:14481102 original size:19 final size:20
Alignment explanation
Indices: 14481067--14481104 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
14481057 CAATTATTTG
*
14481067 ATTTTTATGATCGAATTAAA
1 ATTTTTATGATCAAATTAAA
14481087 ATTTTTAT-ATCAAATTAA
1 ATTTTTATGATCAAATTAA
14481105 CCGAACTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (20 bp):
ATTTTTATGATCAAATTAAA
Found at i:14493683 original size:2 final size:2
Alignment explanation
Indices: 14493676--14493702 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14493666 NNNNNNNNNN
14493676 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
14493703 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14501491 original size:2 final size:2
Alignment explanation
Indices: 14501484--14501510 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14501474 GTATTTGGAT
14501484 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
14501511 CAACTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14502679 original size:3 final size:3
Alignment explanation
Indices: 14502673--14502711 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
14502663 TTAAAATTGT
14502673 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14502712 TATATTATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14502720 original size:3 final size:3
Alignment explanation
Indices: 14502714--14502747 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
14502704 TAATAATATA
14502714 TAT TAT TAT TAT TAT TAT TAT TAT TAT TACT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
14502748 GGTTCATAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:14502858 original size:3 final size:3
Alignment explanation
Indices: 14502852--14502883 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
14502842 TTTTTTTTCT
*
14502852 TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
14502884 AACAAAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (3 bp):
TTC
Found at i:14502942 original size:82 final size:82
Alignment explanation
Indices: 14502853--14503011 Score: 275
Period size: 82 Copynumber: 1.9 Consensus size: 82
14502843 TTTTTTTCTT
* *
14502853 TCTTCTTCTTCTTT-TTCTTCTTCTTCTTCTTAACAAAAAATTCATAATATGAGGATAAAAAGTA
1 TCTTCTTCTT-TTTATTATTATTCTTCTTCTTAACAAAAAATTCATAATATGAGGATAAAAAGTA
14502917 AAGAAAAGTGATTACAAG
65 AAGAAAAGTGATTACAAG
*
14502935 TCTTCTTCTTTTTATTATTATTCTTCTTTTTAACAAAAAATTCATAATATGAGGATAAAAAGTAA
1 TCTTCTTCTTTTTATTATTATTCTTCTTCTTAACAAAAAATTCATAATATGAGGATAAAAAGTAA
14503000 AGAAAAGTGATT
66 AGAAAAGTGATT
14503012 GCTTCAACAA
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
81 3 0.04
82 70 0.96
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (82 bp):
TCTTCTTCTTTTTATTATTATTCTTCTTCTTAACAAAAAATTCATAATATGAGGATAAAAAGTAA
AGAAAAGTGATTACAAG
Found at i:14503604 original size:3 final size:3
Alignment explanation
Indices: 14503596--14503634 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
14503586 AAATTGTATT
14503596 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14503635 TATATTATTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14503643 original size:3 final size:3
Alignment explanation
Indices: 14503637--14503677 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
14503627 TAATAATATA
14503637 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
14503678 CTACTTATGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:14503878 original size:3 final size:3
Alignment explanation
Indices: 14503870--14503916 Score: 76
Period size: 3 Copynumber: 15.7 Consensus size: 3
14503860 ATTGCAAGTT
* *
14503870 TTC TTC TTC TTC TTC TTC TTC TTC TAC TTC TTT TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
14503917 AACAAAAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:14504452 original size:3 final size:3
Alignment explanation
Indices: 14504444--14504480 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
14504434 CTTAAAATTG
14504444 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
14504481 GCTTAATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:14506161 original size:254 final size:251
Alignment explanation
Indices: 14505677--14506213 Score: 677
Period size: 254 Copynumber: 2.1 Consensus size: 251
14505667 ATTCACTTCA
* * ** *
14505677 AATTTTATAAGTTGATTATTCAATGTGTTTTTGGATAAAAATGCCTTAATAATCTCCAAAAAAGT
1 AATTTTATAA-TGGATTATTCAAGGCATTTATGGATAAAAATGCCTTAATAATCTCCAAAAAAGT
* * *
14505742 TATCACTCAATTGAAAATTATTCAAGTGTTTTATAGGCAAAAACACCTTCAATAATCTCTTCATA
65 GATCACTCAATTGAAAATTATTCAAGTATTTTATAGGCAAAAACACCTTCAATAATCTCCTCATA
* *
14505807 AAATTTAATAGGGTTATTAAGGTCGTTTCTGATAAAAAAATACATTTAATAATCTCCTTCAATTT
130 AAATTTAATAGGGTTATTAAAGTCATTTCTGATAAAAAAATACATTTAATAATCTCCTTCAATTT
* * * * *
14505872 TTATGAAATGATTATTCAAACCGTTTTTGGCTAAAAACGTCTCGAATAATCCTCTCT
195 TTATGAAATAATTATTCAAACCATTTTTAGCTAAAAACGTCTCGAATAATCCCCTCC
*
14505929 AATTTTATGAATGGATTATTCAAGGCATTTATGGATAAAAATGCCTTGAATAATCTCCAAAAAGG
1 AATTTTAT-AATGGATTATTCAAGGCATTTATGGATAAAAATGCCTT-AATAATCTCCAAAAAAG
* ** * *
14505994 TGATTACTCAATTTGGGAATTATTCAA-TACATTTTATGGGTAAAAACACCTTCAATAATCTCCT
64 TGATCACTCAA-TTGAAAATTATTCAAGT--ATTTTATAGGCAAAAACACCTTCAATAATCTCCT
* * *
14506058 CATAAAATTTAATGGGGTTATTAAAAG-CATTTCTGGT-CAAAAATACATTTAATAATC-CCTTT
126 CATAAAATTTAATAGGGTTATT-AAAGTCATTTCTGATAAAAAAATACATTTAATAATCTCC-TT
** * * *
14506120 CAATTTTTATGAGGTAATTATTGAAACCATTTTTAGCTAAAAATGTCTTGAATAATCCCCTCC
189 CAATTTTTATGAAATAATTATTCAAACCATTTTTAGCTAAAAACGTCTCGAATAATCCCCTCC
* *
14506183 AATTTTGTATTAGGGATTATTCAAGGCATTT
1 AA-TTT-TATAATGGATTATTCAAGGCATTT
14506214 TTTTCAAAAT
Statistics
Matches: 245, Mismatches: 31, Indels: 15
0.84 0.11 0.05
Matches are distributed among these distances:
252 39 0.16
253 30 0.12
254 89 0.36
255 81 0.33
256 6 0.02
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (251 bp):
AATTTTATAATGGATTATTCAAGGCATTTATGGATAAAAATGCCTTAATAATCTCCAAAAAAGTG
ATCACTCAATTGAAAATTATTCAAGTATTTTATAGGCAAAAACACCTTCAATAATCTCCTCATAA
AATTTAATAGGGTTATTAAAGTCATTTCTGATAAAAAAATACATTTAATAATCTCCTTCAATTTT
TATGAAATAATTATTCAAACCATTTTTAGCTAAAAACGTCTCGAATAATCCCCTCC
Found at i:14506232 original size:255 final size:253
Alignment explanation
Indices: 14505677--14506238 Score: 656
Period size: 255 Copynumber: 2.2 Consensus size: 253
14505667 ATTCACTTCA
* * ** * *
14505677 AATTTTAT-AAGTTGATTATTCAATGTGTTTTTGGATAAAAATGCCTT-AATAATCTCCAAAAAA
1 AATTTTATGAAG-GGATTATTCAAGGCATTTATGGATAAAAACGCCTTGAATAATCTCCAAAAAA
* * *
14505740 GTTATCACTCAATTGAAAATTATTCAAGTGTTTTATAGGCAAAAACACCTTCAATAATCTCTTCA
65 GTGATCACTCAATTGAAAATTATTCAAGTATTTTATAGGCAAAAACACCTTCAATAATCTCCTCA
* *
14505805 TAAAATTTAATAGGGTTATTAAGGTCGTTTCTGATAAAAAAATACATTTAATAATCTCCTTCAAT
130 TAAAATTTAATAGGGTTATTAAAGTCATTTCTGATAAAAAAATACATTTAATAATCTCCTTCAAT
* * * * *
14505870 TTTTATGAAATGATTATTCAAACCGTTTTTGGCTAAAAACGTCTCGAATAATCCTCTCT
195 TTTTATGAAATAATTATTCAAACCATTTTTAGCTAAAAACGTCTCGAATAATCCCCTCC
* * *
14505929 AATTTTATGAATGGATTATTCAAGGCATTTATGGATAAAAATGCCTTGAATAATCTCCAAAAAGG
1 AATTTTATGAAGGGATTATTCAAGGCATTTATGGATAAAAACGCCTTGAATAATCTCCAAAAAAG
* ** * *
14505994 TGATTACTCAATTTGGGAATTATTCAA-TACATTTTATGGGTAAAAACACCTTCAATAATCTCCT
66 TGATCACTCAA-TTGAAAATTATTCAAGT--ATTTTATAGGCAAAAACACCTTCAATAATCTCCT
* * *
14506058 CATAAAATTTAATGGGGTTATTAAAAG-CATTTCTGGT-CAAAAATACATTTAATAATC-CCTTT
128 CATAAAATTTAATAGGGTTATT-AAAGTCATTTCTGATAAAAAAATACATTTAATAATCTCC-TT
** * * *
14506120 CAATTTTTATGAGGTAATTATTGAAACCATTTTTAGCTAAAAATGTCTTGAATAATCCCCTCC
191 CAATTTTTATGAAATAATTATTCAAACCATTTTTAGCTAAAAACGTCTCGAATAATCCCCTCC
* **
14506183 AATTTTGTAT-TAGGGATTATTCAAGGCATTT-T-TTTCAAAATACGCCTTGAATAATC
1 AA-TTT-TATGAAGGGATTATTCAAGGCATTTATGGAT-AAAA-ACGCCTTGAATAATC
14506239 CAATCATAAA
Statistics
Matches: 264, Mismatches: 35, Indels: 19
0.83 0.11 0.06
Matches are distributed among these distances:
252 38 0.14
253 31 0.12
254 94 0.36
255 95 0.36
256 6 0.02
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (253 bp):
AATTTTATGAAGGGATTATTCAAGGCATTTATGGATAAAAACGCCTTGAATAATCTCCAAAAAAG
TGATCACTCAATTGAAAATTATTCAAGTATTTTATAGGCAAAAACACCTTCAATAATCTCCTCAT
AAAATTTAATAGGGTTATTAAAGTCATTTCTGATAAAAAAATACATTTAATAATCTCCTTCAATT
TTTATGAAATAATTATTCAAACCATTTTTAGCTAAAAACGTCTCGAATAATCCCCTCC
Found at i:14506807 original size:62 final size:62
Alignment explanation
Indices: 14506675--14506877 Score: 168
Period size: 62 Copynumber: 3.3 Consensus size: 62
14506665 TCACTCAATT
* * * *
14506675 TGAGA-ATTATTCAAGGTATTT-TATAGGTAAAAATACCTTCAATAATCTCC-TCATAAAATTT-
1 TGAGAGATTATTCAAGGTATTTCTA-A-CTAAAAACACCTTCAATAATC-CCTTC--CAATTTTG
*
14506736 AA
61 TA
* *
14506738 TG-G-GATTATTGAAGGTATTTCTAACTAAAAACACCTTCAATAATCCCTTTCAATTTT-TA
1 TGAGAGATTATTCAAGGTATTTCTAACTAAAAACACCTTCAATAATCCCTTCCAATTTTGTA
* * ** * * *
14506797 TGAGATGATTATTCAATGTATTTTTTTCTAAAAACGCCTTGAATAATGCCTTCCAATTTTGTA
1 TGAGA-GATTATTCAAGGTATTTCTAACTAAAAACACCTTCAATAATCCCTTCCAATTTTGTA
*
14506860 TTAGAGATTATTCAAGGT
1 TGAGAGATTATTCAAGGT
14506878 TTTTTTTCCC
Statistics
Matches: 115, Mismatches: 18, Indels: 15
0.78 0.12 0.10
Matches are distributed among these distances:
59 8 0.07
60 3 0.03
61 20 0.17
62 74 0.64
63 10 0.09
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.39
Consensus pattern (62 bp):
TGAGAGATTATTCAAGGTATTTCTAACTAAAAACACCTTCAATAATCCCTTCCAATTTTGTA
Found at i:14506883 original size:62 final size:63
Alignment explanation
Indices: 14506762--14506907 Score: 170
Period size: 62 Copynumber: 2.3 Consensus size: 63
14506752 GTATTTCTAA
* * * * *
14506762 CTAAAAACACCTTCAATAATCCCTTTCAATTTTTATGAGATGATTATTCAATGTATTTTTT-T
1 CTAAAAACGCCTTAAATAATCCCTTCCAATTTTTATGAGATGATTATTCAAGGTATTTTTTCC
* * * *
14506824 CTAAAAACGCCTTGAATAATGCCTTCCAATTTTGTATTAGA-GATTATTCAAGGTTTTTTTTCC
1 CTAAAAACGCCTTAAATAATCCCTTCCAATTTT-TATGAGATGATTATTCAAGGTATTTTTTCC
*
14506887 CTAGAATACGCCTTAAATAAT
1 CTA-AAAACGCCTTAAATAAT
14506908 TCACTCATAA
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
62 47 0.66
63 9 0.13
64 15 0.21
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (63 bp):
CTAAAAACGCCTTAAATAATCCCTTCCAATTTTTATGAGATGATTATTCAAGGTATTTTTTCC
Found at i:14507172 original size:668 final size:668
Alignment explanation
Indices: 14505931--14507159 Score: 1507
Period size: 668 Copynumber: 1.8 Consensus size: 668
14505921 TCCTCTCTAA
* * * **
14505931 TTTTATGAATGGATTATTCAAGGCATTTATGGATAAAAATGCCTTGAATAATCTCCAAAAAGGTG
1 TTTTATGAATGGATTATTCAAGGCATTTATGGATAAAAACGCCTTGAATAAGCTCAAAAAAAATG
* * * *
14505996 ATTACTCAATTTGGGAATTATTCAATACATTTTATGGGTAAAAACACCTTCAATAATCTCCTCAT
66 ATCACTCAATTTGAGAATTATTCAAGACATTTTATAGGTAAAAACACCTTCAATAATCTCCTCAT
* ** * *
14506061 AAAATTTAATGGGGTTATTAAAAGCATTTCTGGTCAAAAATACATTTAATAATCCCTTTCAATTT
131 AAAATTTAATGGGATTATTAAAAGCATTTCTACTCAAAAACACATTCAATAATCCCTTTCAATTT
* * * *
14506126 TTATGAGGTAATTATTGAAACCATTTTTAGCTAAAAATGTCTTGAATAATCCCCTCCAATTTTGT
196 TTATGAGATAATTATTCAAACCATTTTTAGCTAAAAACGCCTTGAATAATCCCCTCCAATTTTGT
* *
14506191 ATTAGGGATTATTCAAGGCATTTTTTTCAAAATACGCCTTGAATAATCCAATCATAAAATTGAAT
261 ATTAGAGATTATTCAAGGCATTTTTTTCAAAATACGCCTTAAATAATCCAATCATAAAATTGAAT
* *
14506256 GGGTTATTTAAGGTATTTTCGGCTAAAAATACTTTCAATAATTCCCTTCAATTTTGTATTGGAGA
326 GGGTTATTAAAGGTATTTTCGGCTAAAAATACTTTCAATAATTCCCTTCAATTTTGTAGTGGAGA
* * ** ** * * * * * *
14506321 TTATTCAAGGGTTTTTTTTTTACCAAAAACGCCTTCAATATTCCTCATTCATTTTTATTAAGGGG
391 TTATTAAAGCGTTTTTTTGATAAAAAAAACACCTTCAATATTCCCCACTCAATTTTATTAAAGAG
* * * * * *
14506386 ATTACTAAAGGTGATTTTAGCTAAAATTACCTTCAGTATTTCTTTCCAATTTTTTAGAATGAATT
456 ATTACTAAAGGTGATTTTACCTAAAAATACATTCAGTATCTCTTTCAAATTTTTTAGAAGGAATT
* * ** *
14506451 ATTGAAGGCATTTTTGCCCAAAAACATTTTTAATAATCCCCTCAAATATTTTTTGAAGGGATTAT
521 ATTGAAGACATTTTTGACCAAAAACACCTTAAATAATCCCCTC-AATATTTTTTGAAGGGATTAT
14506516 TTAAGGTATTTTTTAAACAAAAAATTTAATGAAGATTATTCAAGGCGTTTCTGGCAAAAAATGCC
585 TTAAGGTATTTTTTAAACAAAAAATTTAATGAAGATTATTCAAGGCGTTTCTGGCAAAAAATGCC
14506581 TTAAATAATCCATTTTAAT
650 TTAAATAATCCATTTTAAT
* *
14506600 TTTTATGAATTGATTGTTCAAGGCATTGT-TGGATAAAAACGCCTTGAATAAGCT-AAAAAAAAT
1 TTTTATGAATGGATTATTCAAGGCATT-TATGGATAAAAACGCCTTGAATAAGCTCAAAAAAAAT
** *
14506663 GATCACTCAATTTGAGAATTATTCAAGGTATTTTATAGGTAAAAATACCTTCAATAATCTCCTCA
65 GATCACTCAATTTGAGAATTATTCAAGACATTTTATAGGTAAAAACACCTTCAATAATCTCCTCA
* * * *
14506728 TAAAATTTAATGGGATTATTGAAGGTATTTCTAACT-AAAAACACCTTCAATAATCCCTTTCAAT
130 TAAAATTTAATGGGATTATTAAAAGCATTTCT-ACTCAAAAACACATTCAATAATCCCTTTCAAT
* *** ** * *
14506792 TTTTATGAGATGATTATTCAATGTATTTTTTTCTAAAAACGCCTTGAATAATGCCTTCCAATTTT
194 TTTTATGAGATAATTATTCAAACCATTTTTAGCTAAAAACGCCTTGAATAATCCCCTCCAATTTT
* * * *
14506857 GTATTAGAGATTATTCAAGG-TTTTTTTTCCCTAGAATACGCCTTAAATAATTCACTCATAAAAT
259 GTATTAGAGATTATTCAAGGCATTTTTTT--C-AAAATACGCCTTAAATAATCCAATCATAAAAT
* *
14506921 TGAATGGGTTATTAAAGGT-GTTTCTGGCTAAAAA-AGTCTT-AATAA-TCCCTTTCAATTTTGT
321 TGAATGGGTTATTAAAGGTATTTTC-GGCTAAAAATACT-TTCAATAATTCCC-TTCAATTTTGT
*
14506982 AGT-GAGGATTATTTAAAGCG-TTTTTTGATAAAAAAAACACCTTTAATATTCCCCACT-AATTT
383 AGTGGA-GATTA-TTAAAGCGTTTTTTTGATAAAAAAAACACCTTCAATATTCCCCACTCAATTT
* * *
14507044 T-TTAGAAGAGATTATTGAAGGTGTTTTTACCTAAAAAATACATTC-GATAATCT-TTTCAAATA
446 TATTA-AAGAGATTACTAAAGGTGATTTTACCT-AAAAATACATTCAG-T-ATCTCTTTCAAAT-
* * * **
14507106 TTTTT-GAAAGGAATTATTTATGACGTTTTTGACCAAAAATGCCTTAAATAATCC
506 TTTTTAG-AAGGAATTATTGAAGACATTTTTGACCAAAAACACCTTAAATAATCC
14507160 TTTTCAATTT
Statistics
Matches: 467, Mismatches: 77, Indels: 31
0.81 0.13 0.05
Matches are distributed among these distances:
667 10 0.02
668 222 0.48
669 127 0.27
670 108 0.23
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.39
Consensus pattern (668 bp):
TTTTATGAATGGATTATTCAAGGCATTTATGGATAAAAACGCCTTGAATAAGCTCAAAAAAAATG
ATCACTCAATTTGAGAATTATTCAAGACATTTTATAGGTAAAAACACCTTCAATAATCTCCTCAT
AAAATTTAATGGGATTATTAAAAGCATTTCTACTCAAAAACACATTCAATAATCCCTTTCAATTT
TTATGAGATAATTATTCAAACCATTTTTAGCTAAAAACGCCTTGAATAATCCCCTCCAATTTTGT
ATTAGAGATTATTCAAGGCATTTTTTTCAAAATACGCCTTAAATAATCCAATCATAAAATTGAAT
GGGTTATTAAAGGTATTTTCGGCTAAAAATACTTTCAATAATTCCCTTCAATTTTGTAGTGGAGA
TTATTAAAGCGTTTTTTTGATAAAAAAAACACCTTCAATATTCCCCACTCAATTTTATTAAAGAG
ATTACTAAAGGTGATTTTACCTAAAAATACATTCAGTATCTCTTTCAAATTTTTTAGAAGGAATT
ATTGAAGACATTTTTGACCAAAAACACCTTAAATAATCCCCTCAATATTTTTTGAAGGGATTATT
TAAGGTATTTTTTAAACAAAAAATTTAATGAAGATTATTCAAGGCGTTTCTGGCAAAAAATGCCT
TAAATAATCCATTTTAAT
Found at i:14507358 original size:62 final size:62
Alignment explanation
Indices: 14507039--14507473 Score: 212
Period size: 62 Copynumber: 6.9 Consensus size: 62
14507029 ATTCCCCACT
* * * *
14507039 AATTTTTTAGAAGAGATTATTGAAGGTG-TTTTTACCTAAAAAATACATTCGATAATCT-TTTC
1 AATTTTTTAGAAGAGATTATTGAAGGTGTTTTTTA--TCAAAAATACCTTCAATAATCTCCTTC
* * ** * * * * *
14507101 AAATATTTTT-GAA-AGGAATTATTTATGACGTTTTTGACCAAAAATGCCTTAAATAATC-CTTT
1 -AAT-TTTTTAGAAGA-G-ATTATTGAAGGTGTTTTTTATCAAAAATACCTTCAATAATCTC-CT
14507163 TC
61 TC
* * * ** * * * *
14507165 AATTTTTTAGAAAACATTATTAAAGGCATTTTTGACCAAAAA-ACGCTTTCAA-CATTTCCCTTC
1 AATTTTTTAGAAGAGATTATTGAAGGTGTTTTTTATCAAAAATAC-C-TTCAATAATCT-CCTTC
* * * * *
14507228 TA-TTTTTAGTGATGAGATTATTGAAGGTATTTTTTGTC-AAAA-ACGCTGT-AAGTAATC-CCC
1 AATTTTTTA--GAAGAGATTATTGAAGGTGTTTTTTATCAAAAATAC-CT-TCAA-TAATCTCCT
14507288 TC
61 TC
* * *
14507290 TAATTTTTTAGAAAAGATTATTGAAGGTGTTTTTTATCAAAAATACCTTCAATATTCTGCTTCC
1 -AATTTTTTAGAAGAGATTATTGAAGGTGTTTTTTATCAAAAATACCTTCAATAATCTCCTT-C
* * * * * * * * *
14507354 ATTTTTATTA-AGGAGATTATTCAATGTGGTTTTGATTAAAAATGCCTTGAATAATCTCCTTC
1 AATTTT-TTAGAAGAGATTATTGAAGGTGTTTTTTATCAAAAATACCTTCAATAATCTCCTTC
* * * * * *
14507416 AATTTTTAAGAAGGGATTATTGAAGGTTTTTTTTGTCAAAAACACTTTCAATAATCTC
1 AATTTTTTAGAAGAGATTATTGAAGGTGTTTTTTATCAAAAATACCTTCAATAATCTC
14507474 ATTATAAAAA
Statistics
Matches: 278, Mismatches: 68, Indels: 53
0.70 0.17 0.13
Matches are distributed among these distances:
61 3 0.01
62 115 0.41
63 101 0.36
64 54 0.19
65 5 0.02
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.41
Consensus pattern (62 bp):
AATTTTTTAGAAGAGATTATTGAAGGTGTTTTTTATCAAAAATACCTTCAATAATCTCCTTC
Found at i:14507395 original size:63 final size:63
Alignment explanation
Indices: 14507291--14507473 Score: 165
Period size: 63 Copynumber: 2.9 Consensus size: 63
14507281 AATCCCCTCT
* * * * * * *
14507291 AATTTTTTAGAA-AAGATTATTGAAGGTGTTTTTTATCAAAAATACCTTCAATATTCTGCTTC
1 AATTTTTAAGAAGGAGATTATTCAAGGTGGTTTTGATCAAAAATACCTTCAATAATCTCCTTC
* ** * * * *
14507353 CATTTTTATTAAGGAGATTATTCAATGTGGTTTTGATTAAAAATGCCTTGAATAATCTCCTTC
1 AATTTTTAAGAAGGAGATTATTCAAGGTGGTTTTGATCAAAAATACCTTCAATAATCTCCTTC
* ** * *
14507416 AATTTTTAAGAAGG-GATTATTGAAGGTTTTTTTTG-TCAAAAACACTTTCAATAATCTC
1 AATTTTTAAGAAGGAGATTATTCAAGG-TGGTTTTGATCAAAAATACCTTCAATAATCTC
14507474 ATTATAAAAA
Statistics
Matches: 93, Mismatches: 26, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
62 36 0.39
63 57 0.61
ACGTcount: A:0.33, C:0.11, G:0.13, T:0.43
Consensus pattern (63 bp):
AATTTTTAAGAAGGAGATTATTCAAGGTGGTTTTGATCAAAAATACCTTCAATAATCTCCTTC
Found at i:14508320 original size:20 final size:20
Alignment explanation
Indices: 14508295--14508337 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
14508285 TTTTTAGATA
* *
14508295 ATTATTTATAATTTAATACT
1 ATTATTTAAAATTTAAAACT
14508315 ATTATTTAAAATTTAAAACT
1 ATTATTTAAAATTTAAAACT
14508335 ATT
1 ATT
14508338 TTATTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (20 bp):
ATTATTTAAAATTTAAAACT
Found at i:14508823 original size:20 final size:21
Alignment explanation
Indices: 14508772--14508825 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
14508762 CTAAAAGTTT
*
14508772 TATTTT-TAT-TATGATTTAA
1 TATTTTATATATATTATTTAA
14508791 TATTTTA-ATTATATTATTTAA
1 TATTTTATA-TATATTATTTAA
14508812 -ATTTTATATATATT
1 TATTTTATATATATT
14508826 TTGAACATGT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 7 0.23
20 13 0.43
21 10 0.33
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TATTTTATATATATTATTTAA
Found at i:14510741 original size:22 final size:21
Alignment explanation
Indices: 14510707--14510752 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
14510697 GAAAGTTGGA
*
14510707 AAATTTATAAAATGTAAATAAT
1 AAATTTATAAAAT-AAAATAAT
* *
14510729 AAATTTTTTAAATAAAATAAT
1 AAATTTATAAAATAAAATAAT
14510750 AAA
1 AAA
14510753 AACAATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AAATTTATAAAATAAAATAAT
Found at i:14513490 original size:12 final size:12
Alignment explanation
Indices: 14513473--14513498 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14513463 TCAAAACTCT
14513473 ATAATGTGATCA
1 ATAATGTGATCA
14513485 ATAATGTGATCA
1 ATAATGTGATCA
14513497 AT
1 AT
14513499 TTCATTGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (12 bp):
ATAATGTGATCA
Found at i:14515084 original size:13 final size:14
Alignment explanation
Indices: 14515056--14515097 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
14515046 TTATTTAATA
14515056 TTTATATAATTATTAC
1 TTTAT-TAA-TATTAC
14515072 TTT-TTAATATTAC
1 TTTATTAATATTAC
14515085 TTTAATTAATATT
1 TTT-ATTAATATT
14515098 TTCTAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 9 0.38
14 3 0.12
15 9 0.38
16 3 0.12
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTATTAATATTAC
Found at i:14515123 original size:17 final size:16
Alignment explanation
Indices: 14515046--14515136 Score: 73
Period size: 16 Copynumber: 5.5 Consensus size: 16
14515036 ATTAAAAAAT
14515046 TTATTTAATATTTATATAA
1 TTATTTAAT-TTTA-AT-A
*
14515065 TTA-TTACTTTTTAATA
1 TTATTTA-ATTTTAATA
14515081 TTACTTTAA--TTAATA
1 TTA-TTTAATTTTAATA
*
14515096 TT-TTCTAATTTTATTA
1 TTATT-TAATTTTAATA
14515112 TATATTTAATTTTAATA
1 T-TATTTAATTTTAATA
14515129 TTATTTAA
1 TTATTTAA
14515137 AGGAAATTAA
Statistics
Matches: 60, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
13 2 0.03
14 3 0.05
15 8 0.13
16 17 0.28
17 14 0.23
18 12 0.20
19 4 0.07
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
TTATTTAATTTTAATA
Found at i:14515196 original size:23 final size:24
Alignment explanation
Indices: 14515170--14515215 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
14515160 TAAATGGCAA
* *
14515170 TATTCAATATTACTAT-CAAATAG
1 TATTAAATAATACTATGCAAATAG
*
14515193 TATTAAATAATATTATGCAAATA
1 TATTAAATAATACTATGCAAATA
14515216 ATATAATTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (24 bp):
TATTAAATAATACTATGCAAATAG
Found at i:14534380 original size:19 final size:19
Alignment explanation
Indices: 14534356--14534409 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
14534346 TTTAAATTTT
14534356 ATTTTTGAACAA-ATTTATA
1 ATTTTTGAA-AATATTTATA
*
14534375 ATTTTTTGAAAATTTTTATA
1 A-TTTTTGAAAATATTTATA
14534395 ATTTTT-AAAAT-TTTA
1 ATTTTTGAAAATATTTA
14534410 CATGAAAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
17 4 0.12
18 5 0.16
19 8 0.25
20 15 0.47
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.56
Consensus pattern (19 bp):
ATTTTTGAAAATATTTATA
Found at i:14534382 original size:20 final size:20
Alignment explanation
Indices: 14534357--14534400 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
14534347 TTAAATTTTA
14534357 TTTTTGAACAA-ATTTATAAT
1 TTTTTGAA-AATATTTATAAT
*
14534377 TTTTTGAAAATTTTTATAAT
1 TTTTTGAAAATATTTATAAT
14534397 TTTT
1 TTTT
14534401 AAAATTTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (20 bp):
TTTTTGAAAATATTTATAAT
Found at i:14534404 original size:18 final size:20
Alignment explanation
Indices: 14534369--14534408 Score: 66
Period size: 18 Copynumber: 2.1 Consensus size: 20
14534359 TTTGAACAAA
14534369 TTTATAATTTTTTGAAAATT
1 TTTATAATTTTTTGAAAATT
14534389 TTTATAA-TTTTT-AAAATT
1 TTTATAATTTTTTGAAAATT
14534407 TT
1 TT
14534409 ACATGAAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.40
19 5 0.25
20 7 0.35
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (20 bp):
TTTATAATTTTTTGAAAATT
Found at i:14535498 original size:19 final size:22
Alignment explanation
Indices: 14535456--14535500 Score: 60
Period size: 19 Copynumber: 2.2 Consensus size: 22
14535446 TGTAAAATGT
*
14535456 AATTAAATCTTATATTTTATCA
1 AATTAAATCTTATATTTTAACA
14535478 AATTAAA-C-TATA-TTTAACA
1 AATTAAATCTTATATTTTAACA
14535497 AATT
1 AATT
14535501 TTTTCTGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 10 0.45
20 4 0.18
21 1 0.05
22 7 0.32
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (22 bp):
AATTAAATCTTATATTTTAACA
Found at i:14537484 original size:19 final size:19
Alignment explanation
Indices: 14537443--14537490 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
14537433 ATGATATTTG
* *
14537443 AAAAGTAAAATTATAAATA
1 AAAAGTAAAATCATAAAGA
*
14537462 AAAAGTAAAATCATATAGCA
1 AAAAGTAAAATCATAAAG-A
14537482 AAAA-TAAAA
1 AAAAGTAAAA
14537491 AAAAAGTCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.69, C:0.04, G:0.06, T:0.21
Consensus pattern (19 bp):
AAAAGTAAAATCATAAAGA
Found at i:14537733 original size:20 final size:21
Alignment explanation
Indices: 14537708--14537751 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
14537698 ATAAAATATT
*
14537708 TTTTAT-TATTATTTATTTA-A
1 TTTTATAT-TTATATATTTATA
14537728 TTTTATATTTATATATTTATA
1 TTTTATATTTATATATTTATA
14537749 TTT
1 TTT
14537752 ATTTAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTTATATTTATATATTTATA
Found at i:14542350 original size:8 final size:8
Alignment explanation
Indices: 14542337--14542371 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
14542327 TTAAATTCTG
14542337 ATAAATAT
1 ATAAATAT
14542345 ATAAATAT
1 ATAAATAT
*
14542353 ATATATAT
1 ATAAATAT
*
14542361 ATATATAT
1 ATAAATAT
14542369 ATA
1 ATA
14542372 TAAAGATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (8 bp):
ATAAATAT
Found at i:14542354 original size:2 final size:2
Alignment explanation
Indices: 14542341--14542373 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
14542331 ATTCTGATAA
*
14542341 AT AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14542374 AAGATTAGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:14543297 original size:27 final size:27
Alignment explanation
Indices: 14543241--14543294 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
14543231 CGAGATTAAG
* *
14543241 ATAAAAATAAAATTAATTATTATAATA
1 ATAAAAATAAAATTAATGATTAGAATA
*
14543268 ATAAAATTAAAATTAATGA-TAGAATA
1 ATAAAAATAAAATTAATGATTAGAATA
14543294 A
1 A
14543295 ATATTTAGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (27 bp):
ATAAAAATAAAATTAATGATTAGAATA
Found at i:14543429 original size:18 final size:18
Alignment explanation
Indices: 14543408--14543442 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14543398 TAATATTTAT
14543408 AAAATTAATAAATTATTA
1 AAAATTAATAAATTATTA
14543426 AAAATTAATAAATTATT
1 AAAATTAATAAATTATT
14543443 TTTATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAATTAATAAATTATTA
Found at i:14549217 original size:23 final size:22
Alignment explanation
Indices: 14549191--14549251 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
14549181 TAAATATATA
*
14549191 TTAATATATTAATTT-TAATTAAT
1 TTAATATAATAATTTAT-ATT-AT
*
14549214 TTAAAATAATAATTTATATTAT
1 TTAATATAATAATTTATATTAT
*
14549236 TTAATA-AAAAATTTAT
1 TTAATATAATAATTTAT
14549252 TTACTAATTC
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 9 0.27
22 7 0.21
23 16 0.48
24 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAATATAATAATTTATATTAT
Found at i:14549237 original size:22 final size:22
Alignment explanation
Indices: 14549204--14549251 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
14549194 ATATATTAAT
14549204 TTTA-ATTAATTTAA-AATAATAA
1 TTTATATTAATTTAATAA-AA-AA
14549226 TTTATATT-ATTTAATAAAAAA
1 TTTATATTAATTTAATAAAAAA
14549247 TTTAT
1 TTTAT
14549252 TTACTAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 7 0.29
22 12 0.50
23 5 0.21
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TTTATATTAATTTAATAAAAAA
Found at i:14549652 original size:26 final size:25
Alignment explanation
Indices: 14549584--14549652 Score: 63
Period size: 26 Copynumber: 2.8 Consensus size: 25
14549574 TTATTAAATC
*
14549584 TATATTATATTATTATTA-AAATTT
1 TATATTATATTAATATTATAAATTT
* *
14549608 TA-AATAGTA-TAATTTTTATAATATTT
1 TATATTA-TATTAA-TATTATAA-ATTT
14549634 TATATTATATTAATATTAT
1 TATATTATATTAATATTAT
14549653 GTTACTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 10
0.69 0.10 0.20
Matches are distributed among these distances:
23 5 0.15
24 8 0.24
25 2 0.06
26 13 0.38
27 6 0.18
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (25 bp):
TATATTATATTAATATTATAAATTT
Found at i:14569062 original size:25 final size:25
Alignment explanation
Indices: 14569034--14569085 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
14569024 ATATCCATAG
* *
14569034 TAAATGGTATATTTGATTCTTTAAA
1 TAAATGATATATTTGATTCCTTAAA
14569059 TAAATGATATATTTGATTCCTTAAA
1 TAAATGATATATTTGATTCCTTAAA
14569084 TA
1 TA
14569086 CCATATACTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.46
Consensus pattern (25 bp):
TAAATGATATATTTGATTCCTTAAA
Found at i:14569466 original size:20 final size:21
Alignment explanation
Indices: 14569441--14569489 Score: 68
Period size: 19 Copynumber: 2.4 Consensus size: 21
14569431 AATTTCCTTC
14569441 TAAAAAAAGTTTC-TCCT-AAA
1 TAAAAAAA-TTTCTTCCTAAAA
14569461 T-AAAAAATTTCTTCCTAAAA
1 TAAAAAAATTTCTTCCTAAAA
14569481 TAAAAAAAT
1 TAAAAAAAT
14569490 GAAGCTGGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
18 4 0.15
19 10 0.38
20 5 0.19
21 7 0.27
ACGTcount: A:0.55, C:0.12, G:0.02, T:0.31
Consensus pattern (21 bp):
TAAAAAAATTTCTTCCTAAAA
Found at i:14573125 original size:5 final size:5
Alignment explanation
Indices: 14573108--14573150 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
14573098 TATTGTTAAA
14573108 ATATT AT-TT ATATT ATATTT ATATT ATA-T -TATT ATATT ATATT
1 ATATT ATATT ATATT ATA-TT ATATT ATATT ATATT ATATT ATATT
14573151 TTAAATTATT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
3 2 0.06
4 6 0.18
5 21 0.62
6 5 0.15
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
ATATT
Found at i:14573126 original size:11 final size:11
Alignment explanation
Indices: 14573112--14573151 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
14573102 GTTAAAATAT
14573112 TATTTATATTA
1 TATTTATATTA
14573123 TATTTATATTA
1 TATTTATATTA
14573134 TATTATTATATTA
1 TA-T-TTATATTA
14573147 TATTT
1 TATTT
14573152 TAAATTATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 15 0.56
12 2 0.07
13 10 0.37
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TATTTATATTA
Found at i:14573153 original size:25 final size:25
Alignment explanation
Indices: 14573108--14573159 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
14573098 TATTGTTAAA
*
14573108 ATATTATTTATATTATATTTATATT
1 ATATTATTTATATTATATTTAAATT
14573133 ATATTA-TTATATTATATTTTAAATT
1 ATATTATTTATATTATA-TTTAAATT
14573158 AT
1 AT
14573160 TAAATTTACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 10 0.40
25 15 0.60
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (25 bp):
ATATTATTTATATTATATTTAAATT
Found at i:14581142 original size:32 final size:32
Alignment explanation
Indices: 14581100--14581180 Score: 85
Period size: 32 Copynumber: 2.6 Consensus size: 32
14581090 ACAAATTATG
14581100 ATATAT-AATTTTTATATAAAATAC-ATTATAA
1 ATATATAAATTTTTATATAAAATACGA-TATAA
* * ***
14581131 ATATTTAAATTTTAATATTTTATACGATATAA
1 ATATATAAATTTTTATATAAAATACGATATAA
*
14581163 ATATATAAATTATTATAT
1 ATATATAAATTTTTATAT
14581181 CTATATGTTA
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
31 5 0.12
32 34 0.85
33 1 0.03
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (32 bp):
ATATATAAATTTTTATATAAAATACGATATAA
Found at i:14581758 original size:15 final size:15
Alignment explanation
Indices: 14581740--14581770 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14581730 AGTTTGATTA
*
14581740 ATTTCAAATTGAATT
1 ATTTAAAATTGAATT
14581755 ATTTAAAATTGAATT
1 ATTTAAAATTGAATT
14581770 A
1 A
14581771 ATCGAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (15 bp):
ATTTAAAATTGAATT
Found at i:14584558 original size:2 final size:2
Alignment explanation
Indices: 14584551--14584580 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14584541 CGTCACCAGC
14584551 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14584581 TACAAAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14585649 original size:17 final size:16
Alignment explanation
Indices: 14585611--14585651 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
14585601 ACCTATTAAG
14585611 AATATTTTTTCTCTTA
1 AATATTTTTTCTCTTA
14585627 AA-ATTTTTAT-TCTGTA
1 AATATTTTT-TCTCT-TA
14585643 AATATTTTT
1 AATATTTTT
14585652 GTCCATCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.41
16 7 0.32
17 6 0.27
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.61
Consensus pattern (16 bp):
AATATTTTTTCTCTTA
Found at i:14602171 original size:52 final size:52
Alignment explanation
Indices: 14602085--14602227 Score: 173
Period size: 52 Copynumber: 2.8 Consensus size: 52
14602075 ACAAAAAGAT
* ** * *
14602085 TTACAAAAGAAGAATTTTAAGA-GAAA-GAAGATTTTTAATAGGTAAGTTTGAC
1 TTACAAGAGAAGAATTCAAAGAGGAAATG-A-ATTTTTAATAGGCAAGTTTAAC
* *
14602137 TTGCAAGAGAAGAATTCAAAGAGGAAATGAATTTTTAATAGGCAATTTTAAC
1 TTACAAGAGAAGAATTCAAAGAGGAAATGAATTTTTAATAGGCAAGTTTAAC
* *
14602189 TTACAAGAGAAGAATTCTAAGAGGAAATGAATTCTTAAT
1 TTACAAGAGAAGAATTCAAAGAGGAAATGAATTTTTAAT
14602228 GGACAAATTT
Statistics
Matches: 79, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
52 73 0.92
53 5 0.06
54 1 0.01
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.29
Consensus pattern (52 bp):
TTACAAGAGAAGAATTCAAAGAGGAAATGAATTTTTAATAGGCAAGTTTAAC
Found at i:14607074 original size:20 final size:21
Alignment explanation
Indices: 14607037--14607080 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
14607027 TTTTACATAT
*
14607037 TATTTTAATATAAAATTTTAA
1 TATTTTAAAATAAAATTTTAA
14607058 TATTTTAAAAT-AAATTTTAA
1 TATTTTAAAATAAAATTTTAA
14607078 TAT
1 TAT
14607081 AAATTATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 12 0.55
21 10 0.45
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
TATTTTAAAATAAAATTTTAA
Found at i:14607113 original size:9 final size:9
Alignment explanation
Indices: 14607098--14607141 Score: 61
Period size: 9 Copynumber: 4.7 Consensus size: 9
14607088 TAATTTTATT
14607098 TTATAAAAA
1 TTATAAAAA
*
14607107 TTTTAAAAA
1 TTATAAAAA
14607116 TATATAAAAA
1 T-TATAAAAA
14607126 TTATAAAAA
1 TTATAAAAA
14607135 TATATAA
1 T-TATAA
14607142 TTTAATTCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
9 18 0.58
10 13 0.42
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (9 bp):
TTATAAAAA
Found at i:14607123 original size:19 final size:19
Alignment explanation
Indices: 14607099--14607141 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
14607089 AATTTTATTT
*
14607099 TATAAAAATTTTAAAAATA
1 TATAAAAATTATAAAAATA
14607118 TATAAAAATTATAAAAATA
1 TATAAAAATTATAAAAATA
14607137 TATAA
1 TATAA
14607142 TTTAATTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
TATAAAAATTATAAAAATA
Found at i:14608156 original size:50 final size:51
Alignment explanation
Indices: 14608068--14608175 Score: 139
Period size: 50 Copynumber: 2.1 Consensus size: 51
14608058 TGTTATACAT
* *
14608068 CAATTTTTTATTTTTTCAATAACTTTTTTTAAGGTATATTCTATTACTATTA
1 CAATTTTTTATTTTTT-AATAAATTTTTTTAAGATATATTCTATTACTATTA
* *
14608120 CAATTTTTT-TTTGTTT-ATAAATTTTTTTAAGATATATTTTATTATTATTA
1 CAATTTTTTATTT-TTTAATAAATTTTTTTAAGATATATTCTATTACTATTA
*
14608170 TAATTT
1 CAATTT
14608176 CATTCTTATG
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
50 35 0.70
51 3 0.06
52 12 0.24
ACGTcount: A:0.30, C:0.06, G:0.04, T:0.61
Consensus pattern (51 bp):
CAATTTTTTATTTTTTAATAAATTTTTTTAAGATATATTCTATTACTATTA
Found at i:14611746 original size:33 final size:32
Alignment explanation
Indices: 14611709--14611788 Score: 90
Period size: 33 Copynumber: 2.4 Consensus size: 32
14611699 TAATTTTAAA
*
14611709 AAAATAAAATTTTT-AAAAGTCATATATTTTTTT
1 AAAAT-AAATTTTTAAAAAGT-ATAAATTTTTTT
*
14611742 AAAATAGATTTTTGAAAAAGTATAAATTTTTTT
1 AAAATAAATTTTT-AAAAAGTATAAATTTTTTT
14611775 AAAGAATAAATTTT
1 -AA-AATAAATTTT
14611789 CGAAAAAAAC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
32 7 0.17
33 16 0.40
34 8 0.20
35 9 0.22
ACGTcount: A:0.47, C:0.01, G:0.06, T:0.45
Consensus pattern (32 bp):
AAAATAAATTTTTAAAAAGTATAAATTTTTTT
Found at i:14611778 original size:17 final size:17
Alignment explanation
Indices: 14611702--14611788 Score: 61
Period size: 17 Copynumber: 5.1 Consensus size: 17
14611692 AATTTTATAA
** *
14611702 TTTTAAAAAAATAAAAT
1 TTTTAAAAGTATAAATT
*
14611719 TTTTAAAAGTCATATATT
1 TTTTAAAAGT-ATAAATT
* *
14611737 TTTTTAAA--ATAGATT
1 TTTTAAAAGTATAAATT
*
14611752 TTTGAAAAAGTATAAATT
1 TTT-TAAAAGTATAAATT
* *
14611770 TTTTTAAAGAATAAATT
1 TTTTAAAAGTATAAATT
14611787 TT
1 TT
14611789 CGAAAAAAAC
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
15 9 0.17
16 3 0.06
17 21 0.39
18 21 0.39
ACGTcount: A:0.47, C:0.01, G:0.06, T:0.46
Consensus pattern (17 bp):
TTTTAAAAGTATAAATT
Found at i:14611889 original size:68 final size:69
Alignment explanation
Indices: 14611819--14611948 Score: 167
Period size: 69 Copynumber: 1.9 Consensus size: 69
14611809 TGAATTTTTA
* * *
14611819 AAAAAATT-TATAATTTTTCTGAAAATTTA-TTTT-CAAAAGATTTATAATATTTTGAAAATTTA
1 AAAAAATTATATAATTTTT-TGAAAATCTATTTTTAAAAAAAATTTATAATATTTTGAAAATTTA
14611881 TTTCT
65 TTTCT
* * * *
14611886 AAAAAATTATATGATTTTTTGACAATCTATTTTTAAAAAAAATTTATAATTTTTTAAAAATTT
1 AAAAAATTATATAATTTTTTGAAAATCTATTTTTAAAAAAAATTTATAATATTTTGAAAATTT
14611949 GTGTGAAAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
67 16 0.30
68 13 0.25
69 24 0.45
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.48
Consensus pattern (69 bp):
AAAAAATTATATAATTTTTTGAAAATCTATTTTTAAAAAAAATTTATAATATTTTGAAAATTTAT
TTCT
Found at i:14611903 original size:32 final size:33
Alignment explanation
Indices: 14611803--14611948 Score: 98
Period size: 35 Copynumber: 4.3 Consensus size: 33
14611793 AAAAACTTTG
** * * *
14611803 TGAAAATGAATTTTTAAAAAAATTTATAATTTTT
1 TGAAAATTTATTTTCAAAAGAA-TTATAATATTT
*
14611837 CTGAAAATTTATTTTCAAAAGATTTATAATATTT
1 -TGAAAATTTATTTTCAAAAGAATTATAATATTT
*
14611871 TGAAAATTTA-TTTCTAAAA-AATTATATGATTTTT
1 TGAAAATTTATTTTC-AAAAGAATTATA--ATATTT
* * * * *
14611905 TGACAATCTATTTTTAAAAAAAATTTATAATTTTT
1 TGAAAATTTA-TTTTCAAAAGAA-TTATAATATTT
*
14611940 TAAAAATTT
1 TGAAAATTT
14611949 GTGTGAAAAA
Statistics
Matches: 90, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
32 10 0.11
33 14 0.16
34 23 0.26
35 33 0.37
36 5 0.06
37 5 0.06
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (33 bp):
TGAAAATTTATTTTCAAAAGAATTATAATATTT
Found at i:14611917 original size:34 final size:32
Alignment explanation
Indices: 14611814--14611948 Score: 144
Period size: 34 Copynumber: 4.0 Consensus size: 32
14611804 GAAAATGAAT
14611814 TTTTAAAAAAATTTATAATTTTTCTGAAAATTTA
1 TTTT-AAAAAATTTATAATTTTT-TGAAAATTTA
* *
14611848 TTTTCAAAAGATTTATAATATTTTGAAAATTTA
1 TTTT-AAAAAATTTATAATTTTTTGAAAATTTA
* * *
14611881 TTTCTAAAAAATTATATGATTTTTTGACAATCTA
1 TTT-TAAAAAATT-TATAATTTTTTGAAAATTTA
*
14611915 TTTTTAAAAAAAATTTATAATTTTTTAAAAATTT
1 -TTTT--AAAAAATTTATAATTTTTTGAAAATTT
14611949 GTGTGAAAAA
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
33 20 0.24
34 38 0.45
35 18 0.21
36 8 0.10
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.50
Consensus pattern (32 bp):
TTTTAAAAAATTTATAATTTTTTGAAAATTTA
Found at i:14612200 original size:13 final size:14
Alignment explanation
Indices: 14612136--14612191 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
14612126 TAAATACCAT
*
14612136 TACATAAAAAATTT
1 TACATAAAAAATTA
* *
14612150 TA-ATCAATATAATCA
1 TACAT-AA-AAAATTA
14612165 TGACATAAAAAATTA
1 T-ACATAAAAAATTA
14612180 TACATAAAAAAT
1 TACATAAAAAAT
14612192 AGTACTAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
13 2 0.06
14 15 0.45
15 11 0.33
16 3 0.09
17 2 0.06
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TACATAAAAAATTA
Found at i:14613180 original size:14 final size:14
Alignment explanation
Indices: 14613163--14613200 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
14613153 ATTTTTTAAA
*
14613163 TTTAAATTTATTAT
1 TTTAAATATATTAT
*
14613177 TTTATATATATTAT
1 TTTAAATATATTAT
14613191 TTT-AATATAT
1 TTTAAATATAT
14613201 AAAAATATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 6 0.29
14 15 0.71
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTAAATATATTAT
Found at i:14617853 original size:5 final size:5
Alignment explanation
Indices: 14617845--14617870 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14617835 AGTTTATTTT
14617845 AAATA AAATA AAATA AAATA AAATA A
1 AAATA AAATA AAATA AAATA AAATA A
14617871 TTAATATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:14618034 original size:183 final size:177
Alignment explanation
Indices: 14617543--14618096 Score: 530
Period size: 185 Copynumber: 3.1 Consensus size: 177
14617533 GTGAGTTTTA
* * **
14617543 AAAAAATAATTCTATTTACTGAATCAATTTAAATAATTATGATTATTTATATAATTATCTATTGT
1 AAAAAATAATTCTATTTATTGAATCAATTCAAATAATTATGATTATTTATATAATTATCTATTAC
* * * * *
14617608 AAATCATTATGA-TCTTTTTTATCATAAAACAAATATTTTTATTCATATAAATTTATTCGAAATA
66 AAATCGTTATAATTTTTTTTTATCAT-AAACAAATATTTTTATTCATATAAGTTTATTTGAAATA
* * * *
14617672 AAAT--AATATTAATATATTTATATTTCAAAAATTAAATAAGAGATTT
130 AAATAAAATAATAAAATATTAATATTTCAAAAATTAAAGAAGAGATTT
* * * * ** * * ** * * *
14617718 AAAAAATAAATCTGTTTATTAAATTAATTCAAATAGCTATGACTATCTGA-GCAATTATTTTTTT
1 AAAAAATAATTCTATTTATTGAATCAATTCAAATAATTATGATTAT-TTATATAATTATCTATTA
* * * *
14617782 CAAATCGTTATGACTTTTTGTTTTATCATAAA-ATATATTTTTTAATTCATATTAGTTTATTTTA
65 CAAATCGTTAT-AATTTTT-TTTTATCATAAACAAATA-TTTTT-ATTCATATAAGTTTATTTGA
14617846 AATAAAATAAAATAAAATAAAATAATTAATATTTCAAAAATTAAAAAGAAGAGATTT
126 AATAAAATAAAAT--AATAAAAT-ATTAATATTTCAAAAATT--AAAGAAGAGATTT
* * *
14617903 AAAAAATAATTTTATTTATTGAACCAGTTCAAATAATTATGATTATTTATATAATTATCTATTAC
1 AAAAAATAATTCTATTTATTGAATCAATTCAAATAATTATGATTATTTATATAATTATCTATTAC
* * *
14617968 AAATCGTTATAATTTTTTTTTGTCATAAAGCAAATATTTTTGTTCATATAAGTTTGTTTGAAATA
66 AAATCGTTATAATTTTTTTTTATCATAAA-CAAATATTTTTATTCATATAAGTTTATTTGAAATA
* ** * ** * *
14618033 AAAT--AATACTAATCTATTTATATTT-TGAAATTAAATAAGACATTT
130 AAATAAAATAATAAAATATTAATATTTCAAAAATTAAAGAAGAGATTT
*
14618078 AAAAAAATAAATCTATTTA
1 -AAAAAATAATTCTATTTA
14618097 CCAAAACAAT
Statistics
Matches: 300, Mismatches: 62, Indels: 33
0.76 0.16 0.08
Matches are distributed among these distances:
175 66 0.22
176 22 0.07
177 16 0.05
178 42 0.14
179 5 0.02
180 3 0.01
181 3 0.01
182 6 0.02
183 52 0.17
184 13 0.04
185 72 0.24
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (177 bp):
AAAAAATAATTCTATTTATTGAATCAATTCAAATAATTATGATTATTTATATAATTATCTATTAC
AAATCGTTATAATTTTTTTTTATCATAAACAAATATTTTTATTCATATAAGTTTATTTGAAATAA
AATAAAATAATAAAATATTAATATTTCAAAAATTAAAGAAGAGATTT
Found at i:14618885 original size:181 final size:179
Alignment explanation
Indices: 14618437--14619063 Score: 569
Period size: 180 Copynumber: 3.5 Consensus size: 179
14618427 TAGTAAGATA
* * * * * *
14618437 GTATGAATTAAAAA-AATTATTTTATGATAAAACAAAAACTCATAACT-ACTTAAAAGAAATAAT
1 GTATGAA-TAAAAACAATTATTTTATAACAAAACAAAAAGTAATAA-TAATTTAAAATAAATAAT
* * *** * * * *
14618500 TATTCATAT-AGTTTTAACTTTTTAAACTAATTTGATAAACAAATTTATTTTTTAAATTTCTTAG
64 TGTTCAAATGA-CCATAACTATTTGAATTAATTTGATAAACAAATTTATTTTTTTAA-TTCTTA-
* * * * *
14618564 C-TATTAATTTTTGAAATATTATTAGATTAGTATTATTTTATCTAAATAAGCTT
126 CTTAATAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTGAATAAGCTT
* * * * * * * *
14618617 GTATGAATATAAATAATTATTTTATGATAAAACAAAAAGTTATAATGATTTGAAATATATAATTG
1 GTATGAATAAAAACAATTATTTTATAACAAAACAAAAAGTAATAATAATTTAAAATAAATAATTG
* * * *
14618682 TTCAAATGATCATAACTATTTGAATTAATTTGGTAAACAAATATATTTTTTTAATGTCTTATTTA
66 TTCAAATGACCATAACTATTTGAATTAATTTGATAAACAAATTTATTTTTTTAAT-TCTTACTTA
* * *
14618747 ATAATTTTTGAAAGATTAATAAATTAATATTATTTTATTTCGTATAAGCTT
130 ATAATTTTTGAAATATTAATAAATTAGTATTATTTTATTT-GAATAAGCTT
* * * *
14618798 ATAT-AATAAAAAACAATTATTTTATAACCAAACAAAATGTAATAACAATTTAAAATAAATAATT
1 GTATGAAT-AAAAACAATTATTTTATAACAAAACAAAAAGTAATAATAATTTAAAATAAATAATT
* * * * * *
14618862 GTTTAAATGACCATAATTATTTGAATTGATTTAATAAACAGATTTA-TATTTTAATTC--ACTTA
65 GTTCAAATGACCATAACTATTTGAATTAATTTGATAAACAAATTTATTTTTTTAATTCTTACTTA
* *
14618924 A-AATTTTTTGAAATATTAATAAATTAGTATTGTCTTATTTTGAATAA--TT
130 ATAA-TTTTTGAAATATTAATAAATTAGTATTATTTTA-TTTGAATAAGCTT
* * * * *
14618973 GTATGAACT-AAAAGAATTATTTTATAACAAAACAAAAAGTCATAATAATTTAAAATAGACAACT
1 GTATGAA-TAAAAACAATTATTTTATAACAAAACAAAAAGTAATAATAATTTAAAATAAATAATT
* *
14619037 GTTCAAAT-ATTCATAACTATTTAAATT
65 GTTCAAATGA-CCATAACTATTTGAATT
14619064 TGTTTTATTT
Statistics
Matches: 369, Mismatches: 66, Indels: 29
0.80 0.14 0.06
Matches are distributed among these distances:
174 1 0.00
175 73 0.20
176 4 0.01
177 40 0.11
178 3 0.01
179 9 0.02
180 144 0.39
181 95 0.26
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.42
Consensus pattern (179 bp):
GTATGAATAAAAACAATTATTTTATAACAAAACAAAAAGTAATAATAATTTAAAATAAATAATTG
TTCAAATGACCATAACTATTTGAATTAATTTGATAAACAAATTTATTTTTTTAATTCTTACTTAA
TAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTGAATAAGCTT
Found at i:14627859 original size:2 final size:2
Alignment explanation
Indices: 14627847--14627884 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
14627837 ATTCCTACTC
*
14627847 AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14627885 CTGTAAGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14628750 original size:13 final size:12
Alignment explanation
Indices: 14628732--14628767 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 12
14628722 GTTTTTATTT
14628732 AAATATTATTTTA
1 AAATA-TATTTTA
14628745 AAATATATTTTA
1 AAATATATTTTA
14628757 AAATAATATTT
1 AAAT-ATATTT
14628768 AAATAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (12 bp):
AAATATATTTTA
Found at i:14632179 original size:69 final size:69
Alignment explanation
Indices: 14632068--14632206 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
14632058 GTAAACTCTT
*
14632068 TCTTGGGGTTTTCTAATGCTATGGATTCTCCTCCTCCAGCTGTTTCCAAATGTGGGTTAGGCACG
1 TCTTGGGGTTGTCTAATGCTATGGATTCTCCTCCTCCAGCTGTTTCCAAATGTGGGTTAGGCACG
14632133 TTGG
66 TTGG
14632137 TCTTGGGGTTGTCTAATGCTATGGATTCTCCTCCTCCAGCTGTTTCCAAATGTGGGTTAGGCACG
1 TCTTGGGGTTGTCTAATGCTATGGATTCTCCTCCTCCAGCTGTTTCCAAATGTGGGTTAGGCACG
14632202 TTGG
66 TTGG
14632206 T
1 T
14632207 TTCCCATGAA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.14, C:0.22, G:0.27, T:0.37
Consensus pattern (69 bp):
TCTTGGGGTTGTCTAATGCTATGGATTCTCCTCCTCCAGCTGTTTCCAAATGTGGGTTAGGCACG
TTGG
Found at i:14632760 original size:15 final size:15
Alignment explanation
Indices: 14632730--14632777 Score: 71
Period size: 15 Copynumber: 3.2 Consensus size: 15
14632720 TAAAATCAAT
14632730 GAAGAACAAGAACAA
1 GAAGAACAAGAACAA
*
14632745 GAAGAGAC-AGAGCAA
1 GAAGA-ACAAGAACAA
14632760 GAAGAACAAGAACAA
1 GAAGAACAAGAACAA
14632775 GAA
1 GAA
14632778 TTACATTTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 2 0.07
15 25 0.86
16 2 0.07
ACGTcount: A:0.62, C:0.12, G:0.25, T:0.00
Consensus pattern (15 bp):
GAAGAACAAGAACAA
Found at i:14634749 original size:10 final size:9
Alignment explanation
Indices: 14634734--14634758 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14634724 AGCATCGTCC
14634734 TTTTTTTCT
1 TTTTTTTCT
14634743 TTTTTTTCT
1 TTTTTTTCT
14634752 TTTTTTT
1 TTTTTTT
14634759 ACAAAAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:14635645 original size:15 final size:15
Alignment explanation
Indices: 14635625--14635659 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
14635615 CAATGCAGAA
*
14635625 CCCCCCTACCCCTCTC
1 CCCCCCT-CCCCCCTC
14635641 CCCCCCTCCCCCCTC
1 CCCCCCTCCCCCCTC
14635656 CCCC
1 CCCC
14635660 ACCCCACTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.03, C:0.83, G:0.00, T:0.14
Consensus pattern (15 bp):
CCCCCCTCCCCCCTC
Found at i:14637297 original size:3 final size:3
Alignment explanation
Indices: 14637289--14637335 Score: 51
Period size: 3 Copynumber: 15.0 Consensus size: 3
14637279 TACTTGGGTT
*
14637289 TTC TTC TTC TTC TTC TTC TTCC TT- TTC TTC TTC AGTTC CTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TT-C TTC TTC TTC TTC --TTC TTC TTC TTC
14637336 GTTTTTTCTC
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 2 0.05
3 30 0.79
4 3 0.08
5 3 0.08
ACGTcount: A:0.02, C:0.34, G:0.02, T:0.62
Consensus pattern (3 bp):
TTC
Found at i:14637354 original size:26 final size:26
Alignment explanation
Indices: 14637287--14637344 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
14637277 TCTACTTGGG
*
14637287 TTTTCTTCTTC--TTCTTCTTCTTCC
1 TTTTCTTCTTCAGTTCCTCTTCTTCC
*
14637311 TTTTCTTCTTCAGTTCCTCTTCTTCG
1 TTTTCTTCTTCAGTTCCTCTTCTTCC
14637337 TTTT-TTCT
1 TTTTCTTCT
14637345 CTCGTATCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
24 11 0.37
25 4 0.13
26 15 0.50
ACGTcount: A:0.02, C:0.29, G:0.03, T:0.66
Consensus pattern (26 bp):
TTTTCTTCTTCAGTTCCTCTTCTTCC
Found at i:14653904 original size:24 final size:23
Alignment explanation
Indices: 14653851--14653904 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
14653841 GTATATATTA
14653851 AAATTTTGAATTATTTGTTAATT
1 AAATTTTGAATTATTTGTTAATT
***
14653874 TTGTTTTGAATTACGTTT-TTAATT
1 AAATTTTGAATTA--TTTGTTAATT
14653898 AAATTTT
1 AAATTTT
14653905 ATAATTTAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
23 10 0.43
24 10 0.43
25 3 0.13
ACGTcount: A:0.30, C:0.02, G:0.09, T:0.59
Consensus pattern (23 bp):
AAATTTTGAATTATTTGTTAATT
Found at i:14653946 original size:11 final size:11
Alignment explanation
Indices: 14653930--14653971 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
14653920 ATGTGATAAT
14653930 ATAATATAAAA
1 ATAATATAAAA
14653941 ATAATATAAATA
1 ATAATATAAA-A
*
14653953 AAATATATAAAA
1 ATA-ATATAAAA
14653965 ATAATAT
1 ATAATAT
14653972 GATTTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 14 0.52
12 6 0.22
13 7 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
ATAATATAAAA
Found at i:14653946 original size:16 final size:15
Alignment explanation
Indices: 14653925--14653963 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
14653915 ATACGATGTG
14653925 ATAATATAATATAAAA
1 ATAATATAA-ATAAAA
14653941 ATAATATAAAT-AAA
1 ATAATATAAATAAAA
14653955 AT-ATATAAA
1 ATAATATAAA
14653964 AATAATATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.30
14 5 0.22
15 2 0.09
16 9 0.39
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
ATAATATAAATAAAA
Found at i:14654006 original size:23 final size:24
Alignment explanation
Indices: 14653978--14654031 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
14653968 ATATGATTTA
*
14653978 AAATTTTAATAAAA-ATTATAAAT
1 AAATTTTAATAAAATATTAAAAAT
*
14654001 AAA-TTTAATAAAATTTTAAAAAT
1 AAATTTTAATAAAATATTAAAAAT
*
14654024 ATATTTTA
1 AAATTTTA
14654032 TATTTTTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 10 0.38
23 12 0.46
24 4 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
AAATTTTAATAAAATATTAAAAAT
Found at i:14655047 original size:22 final size:22
Alignment explanation
Indices: 14655020--14655087 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
14655010 TTTTCTTATT
*
14655020 TTTTTTTTATATAAAATTTGCA
1 TTTTTTTTATGTAAAATTTGCA
* *
14655042 --TTTTTTATGTAAATTTTAC-
1 TTTTTTTTATGTAAAATTTGCA
*
14655061 TTCTTTTTTATGTAAACTTTGCA
1 TT-TTTTTTATGTAAAATTTGCA
14655084 TTTT
1 TTTT
14655088 GGTTAAAGGG
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
20 16 0.43
22 19 0.51
23 2 0.05
ACGTcount: A:0.25, C:0.07, G:0.06, T:0.62
Consensus pattern (22 bp):
TTTTTTTTATGTAAAATTTGCA
Found at i:14659550 original size:23 final size:23
Alignment explanation
Indices: 14659520--14659566 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
14659510 TCTTGAGTGG
14659520 CTATCAGAAATCAAACAAAGTAT
1 CTATCAGAAATCAAACAAAGTAT
*
14659543 CTATCAGAAGTCAAACAAAGTAT
1 CTATCAGAAATCAAACAAAGTAT
14659566 C
1 C
14659567 ATGTAAGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.49, C:0.19, G:0.11, T:0.21
Consensus pattern (23 bp):
CTATCAGAAATCAAACAAAGTAT
Found at i:14667738 original size:171 final size:171
Alignment explanation
Indices: 14667453--14667789 Score: 620
Period size: 171 Copynumber: 2.0 Consensus size: 171
14667443 AACAACAAAG
* *
14667453 GGTTTTGGTAAATGAGTGTTGAACATCTATTTTTGCAGCTTAATGCCAGACCATAGCCAGAATAT
1 GGTTTTGGTAAATGAGTGTTGAACATCTATTTTTGCAGCTTAATGCCACAACATAGCCAGAATAT
14667518 AAGAATGCAGTAGAGTTAGCCAGAATGAAGCATTAAATGGAAAAAACTATGCATCAAAACTAATG
66 AAGAATGCAGTAGAGTTAGCCAGAATGAAGCATTAAATGGAAAAAACTATGCATCAAAACTAATG
*
14667583 GCATGAATTGGACTATTGCTGTGAGCAAGAACTAGTTAAAA
131 GCATGAATTGGACTATTGCTGTAAGCAAGAACTAGTTAAAA
14667624 GGTTTTGGTAAATGAGTGTTGAACATCTATTTTTGCAGCTTAATGCCACAACATAGCCAGAATAT
1 GGTTTTGGTAAATGAGTGTTGAACATCTATTTTTGCAGCTTAATGCCACAACATAGCCAGAATAT
* *
14667689 AAGAATGCAGTAGAGTTAGCCAGAATGAAGCATTAAATTGAAAAAACTATGCATCAAAACTAGTG
66 AAGAATGCAGTAGAGTTAGCCAGAATGAAGCATTAAATGGAAAAAACTATGCATCAAAACTAATG
*
14667754 GCATGAATTGGACTTTTGCTGTAAGCAAGAACTAGT
131 GCATGAATTGGACTATTGCTGTAAGCAAGAACTAGT
14667790 CAAGTAGACT
Statistics
Matches: 160, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
171 160 1.00
ACGTcount: A:0.37, C:0.14, G:0.21, T:0.28
Consensus pattern (171 bp):
GGTTTTGGTAAATGAGTGTTGAACATCTATTTTTGCAGCTTAATGCCACAACATAGCCAGAATAT
AAGAATGCAGTAGAGTTAGCCAGAATGAAGCATTAAATGGAAAAAACTATGCATCAAAACTAATG
GCATGAATTGGACTATTGCTGTAAGCAAGAACTAGTTAAAA
Found at i:14677090 original size:17 final size:18
Alignment explanation
Indices: 14677068--14677117 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 18
14677058 TCACTTTTCA
14677068 AACTTTCTTGTTTG-TGG
1 AACTTTCTTGTTTGATGG
14677085 AACTTTCATTGTTTTTGATGG
1 AACTTTC-TTG--TTTGATGG
14677106 AA-TTTCTTGTTT
1 AACTTTCTTGTTT
14677118 TCTAGGATGA
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
17 10 0.34
18 3 0.10
19 3 0.10
20 8 0.28
21 5 0.17
ACGTcount: A:0.16, C:0.10, G:0.18, T:0.56
Consensus pattern (18 bp):
AACTTTCTTGTTTGATGG
Found at i:14677111 original size:20 final size:19
Alignment explanation
Indices: 14677068--14677118 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
14677058 TCACTTTTCA
14677068 AACTTTCTTG--TTTGTGG
1 AACTTTCTTGTTTTTGTGG
14677085 AACTTTCATTGTTTTTGATGG
1 AACTTTC-TTGTTTTTG-TGG
14677106 AA-TTTCTTGTTTT
1 AACTTTCTTGTTTT
14677119 CTAGGATGAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
17 7 0.23
18 3 0.10
19 7 0.23
20 8 0.27
21 5 0.17
ACGTcount: A:0.16, C:0.10, G:0.18, T:0.57
Consensus pattern (19 bp):
AACTTTCTTGTTTTTGTGG
Found at i:14679196 original size:22 final size:22
Alignment explanation
Indices: 14679168--14679211 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
14679158 CTAAATCTTC
*
14679168 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
14679190 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
14679212 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:14681721 original size:23 final size:25
Alignment explanation
Indices: 14681666--14681724 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
14681656 TTGAAAGGGT
* *
14681666 TCGGCAATGAAAGCCTAAACAGGAT
1 TCGGCAATGAAAGCCTAAACAGAAG
14681691 TCGGCAATGAAAGCCTAAA-A-AAG
1 TCGGCAATGAAAGCCTAAACAGAAG
14681714 TCGGCAATGAA
1 TCGGCAATGAA
14681725 GGCTGAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 12 0.38
24 1 0.03
25 19 0.59
ACGTcount: A:0.42, C:0.19, G:0.24, T:0.15
Consensus pattern (25 bp):
TCGGCAATGAAAGCCTAAACAGAAG
Found at i:14681903 original size:22 final size:22
Alignment explanation
Indices: 14681875--14681918 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
14681865 CTAAATTTTC
*
14681875 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
14681897 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
14681919 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:14684007 original size:20 final size:20
Alignment explanation
Indices: 14683969--14684010 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
14683959 TCATATCATA
* *
14683969 TAATTATTTTTTTTAAAAAT
1 TAATTATTTGTTATAAAAAT
*
14683989 TAATTATTTGTTATCAAAAT
1 TAATTATTTGTTATAAAAAT
14684009 TA
1 TA
14684011 TTAATTAATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
TAATTATTTGTTATAAAAAT
Found at i:14696035 original size:11 final size:11
Alignment explanation
Indices: 14696019--14696047 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
14696009 CAAATTGTGC
14696019 AGAAAAAAAAA
1 AGAAAAAAAAA
14696030 AG-AAAAAAAA
1 AGAAAAAAAAA
14696040 AGAAAAAA
1 AGAAAAAA
14696048 CCCTTAAGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.59
11 7 0.41
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AGAAAAAAAAA
Found at i:14696037 original size:10 final size:10
Alignment explanation
Indices: 14696022--14696047 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14696012 ATTGTGCAGA
14696022 AAAAAAAAAG
1 AAAAAAAAAG
14696032 AAAAAAAAAG
1 AAAAAAAAAG
14696042 AAAAAA
1 AAAAAA
14696048 CCCTTAAGCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:14708089 original size:17 final size:17
Alignment explanation
Indices: 14708053--14708091 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
14708043 ATTAATTATT
**
14708053 AATTATTATATTTAAAA
1 AATTATTATAAATAAAA
*
14708070 AATTATTATAAATAATA
1 AATTATTATAAATAAAA
14708087 AATTA
1 AATTA
14708092 ATTACTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATTATTATAAATAAAA
Found at i:14708278 original size:32 final size:32
Alignment explanation
Indices: 14708213--14708279 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
14708203 AAATTTATTT
* * *
14708213 ATTTTTATATTTATATCGTATATAATATTAAA
1 ATTTATATATTTATATCATATATAATATGAAA
* * *
14708245 ATTTATATATTTATATTATATGTTATATGAAA
1 ATTTATATATTTATATCATATATAATATGAAA
14708277 ATT
1 ATT
14708280 AAGTGTTATA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.54
Consensus pattern (32 bp):
ATTTATATATTTATATCATATATAATATGAAA
Found at i:14708390 original size:25 final size:25
Alignment explanation
Indices: 14708333--14708410 Score: 74
Period size: 23 Copynumber: 3.2 Consensus size: 25
14708323 TTTTATTAAA
* *
14708333 TTTATATA-TA-ATTATTATTAAAAT
1 TTTATATATTATATTATT-TTTATAT
14708357 TTTA-A-ATTATATTATTTTTATAT
1 TTTATATATTATATTATTTTTATAT
*
14708380 TTTATATATTATATTATCATATTATAT
1 TTTATATATTATATTAT--TTTTATAT
14708407 TTTA
1 TTTA
14708411 AGTTATCAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
22 1 0.02
23 12 0.27
24 11 0.24
25 10 0.22
27 11 0.24
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (25 bp):
TTTATATATTATATTATTTTTATAT
Found at i:14708416 original size:25 final size:23
Alignment explanation
Indices: 14708343--14708416 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 23
14708333 TTTATATATA
*
14708343 ATTATTATTAAAATTTTAAATTAT
1 ATTATTATT-ATATTTTAAATTAT
*
14708367 ATTATTTTTATATTTTATATATTAT
1 ATTATTATTATATTTTA-A-ATTAT
*
14708392 ATTATCATATTATATTTTAAGTTAT
1 ATTAT--TATTATATTTTAAATTAT
14708417 CAAATTAAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
23 7 0.17
24 9 0.21
25 14 0.33
26 1 0.02
27 11 0.26
ACGTcount: A:0.38, C:0.01, G:0.01, T:0.59
Consensus pattern (23 bp):
ATTATTATTATATTTTAAATTAT
Found at i:14708582 original size:2 final size:2
Alignment explanation
Indices: 14708575--14708601 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
14708565 GTTAATCCAA
14708575 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
14708602 ATTTTATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14712854 original size:21 final size:21
Alignment explanation
Indices: 14712813--14712854 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
14712803 ATATTAATTT
*
14712813 TATTAAAAAATTAAATTTTAA
1 TATTAAAAAATTAAATCTTAA
*
14712834 TATTAAATATATTAAA-CTTAA
1 TATTAAA-AAATTAAATCTTAA
14712855 AATTTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TATTAAAAAATTAAATCTTAA
Found at i:14712980 original size:33 final size:33
Alignment explanation
Indices: 14712938--14713008 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
14712928 CATGTTTGGC
* *
14712938 TTTAGCAGCCCTTTGATTAATATATTAATAATT
1 TTTAGCAGCCCTTCGATTAATATATTAACAATT
14712971 TTTAGCAGCCCTTCGATTAATATATTAACAATT
1 TTTAGCAGCCCTTCGATTAATATATTAACAATT
14713004 TTTAG
1 TTTAG
14713009 TACTCCATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (33 bp):
TTTAGCAGCCCTTCGATTAATATATTAACAATT
Found at i:14719499 original size:15 final size:16
Alignment explanation
Indices: 14719472--14719501 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14719462 ATTATTTTTA
14719472 AAAAATAATATTTAAT
1 AAAAATAATATTTAAT
14719488 AAAAATAA-ATTTAA
1 AAAAATAATATTTAA
14719502 ATCTCAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (16 bp):
AAAAATAATATTTAAT
Found at i:14723013 original size:9 final size:10
Alignment explanation
Indices: 14722995--14723037 Score: 54
Period size: 10 Copynumber: 4.4 Consensus size: 10
14722985 CAAATCAAAA
14722995 TATATATTTT
1 TATATATTTT
14723005 TAT-TATTTTT
1 TATATA-TTTT
14723015 TATATATTTT
1 TATATATTTT
*
14723025 T-TAAATTTT
1 TATATATTTT
14723034 TATA
1 TATA
14723038 GAATAAAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
9 10 0.34
10 17 0.59
11 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TATATATTTT
Found at i:14723022 original size:11 final size:11
Alignment explanation
Indices: 14722994--14723027 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
14722984 TCAAATCAAA
14722994 ATATATATTTTT
1 ATATAT-TTTTT
14723006 AT-TATTTTTT
1 ATATATTTTTT
14723016 ATATATTTTTT
1 ATATATTTTTT
14723027 A
1 A
14723028 AATTTTTATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.33
11 12 0.57
12 2 0.10
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
ATATATTTTTT
Found at i:14733285 original size:2 final size:2
Alignment explanation
Indices: 14733278--14733303 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14733268 CAAGCTCCAA
14733278 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14733304 GTAAACTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14738960 original size:2 final size:2
Alignment explanation
Indices: 14738953--14738986 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
14738943 CCTGTTGTAT
14738953 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
14738987 CCCGATTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:14741316 original size:19 final size:21
Alignment explanation
Indices: 14741292--14741330 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
14741282 AAAATATTAT
14741292 TTTTTAATTA-AT-TATTTAA
1 TTTTTAATTATATATATTTAA
*
14741311 TTTTTATTTATATATATTTA
1 TTTTTAATTATATATATTTA
14741331 TATAATGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 2 0.12
21 6 0.35
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTTAATTATATATATTTAA
Found at i:14741346 original size:30 final size:30
Alignment explanation
Indices: 14741310--14741380 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
14741300 TAATTATTTA
* * *
14741310 ATTTTTATTTATATATATTTATATAATGAT
1 ATTTTTATTTATATATATTTAAAAAATAAT
** *
14741340 ATTTTTAAATATTTATATTTAAAAAATAAT
1 ATTTTTATTTATATATATTTAAAAAATAAT
14741370 ATTTTATATTT
1 ATTTT-TATTT
14741381 TTAAAAAATA
Statistics
Matches: 32, Mismatches: 8, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
30 29 0.91
31 3 0.09
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (30 bp):
ATTTTTATTTATATATATTTAAAAAATAAT
Found at i:14741377 original size:21 final size:22
Alignment explanation
Indices: 14741347--14741399 Score: 83
Period size: 23 Copynumber: 2.5 Consensus size: 22
14741337 GATATTTTTA
14741347 AATA-TTTATA-TTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
14741367 AATATTTTATATTTTTAAAAAAT
1 AATATTTTATA-TTTTAAAAAAT
14741390 AATATTTTAT
1 AATATTTTAT
14741400 TAATTTCGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
23 20 0.67
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:14744138 original size:42 final size:42
Alignment explanation
Indices: 14744091--14744175 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
14744081 TTTTTTTTTA
*
14744091 AAGCTTTGAAAATATATTACATGTGTTAGACATCTGATAATT
1 AAGCTTTGAAAATATATTACATGTGTTAGACATCTAATAATT
*
14744133 AAGCTTTGAAAATATATTATATGTGTTAGACATCTAATAATT
1 AAGCTTTGAAAATATATTACATGTGTTAGACATCTAATAATT
14744175 A
1 A
14744176 GAATTAAGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (42 bp):
AAGCTTTGAAAATATATTACATGTGTTAGACATCTAATAATT
Found at i:14745982 original size:25 final size:25
Alignment explanation
Indices: 14745948--14746006 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
14745938 GACCAGACCA
14745948 GACACCGGTCCAGAGAGAAGTGTGT
1 GACACCGGTCCAGAGAGAAGTGTGT
14745973 GACACCGGTCCAGAGAGAAGTGTGT
1 GACACCGGTCCAGAGAGAAGTGTGT
*
14745998 AACACCGGT
1 GACACCGGT
14746007 TTGGTCCCAG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.29, C:0.22, G:0.34, T:0.15
Consensus pattern (25 bp):
GACACCGGTCCAGAGAGAAGTGTGT
Found at i:14746460 original size:4 final size:4
Alignment explanation
Indices: 14746451--14746481 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
14746441 ATCTCTATTC
*
14746451 TCTG TCTG TCTG TCTG TCCG TCTG TCTG TCT
1 TCTG TCTG TCTG TCTG TCTG TCTG TCTG TCT
14746482 TTCTCAGTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.29, G:0.23, T:0.48
Consensus pattern (4 bp):
TCTG
Found at i:14747248 original size:12 final size:11
Alignment explanation
Indices: 14747233--14747311 Score: 90
Period size: 12 Copynumber: 6.9 Consensus size: 11
14747223 TAGATGAAAG
14747233 TGATGATGA-T
1 TGATGATGATT
14747243 T-ATGATGAGTT
1 TGATGATGA-TT
*
14747254 TGGTGATGAGTT
1 TGATGATGA-TT
14747266 TGATGATGAATT
1 TGATGATG-ATT
14747278 TGATGATGAGTT
1 TGATGATGA-TT
14747290 TGATGATGAGTT
1 TGATGATGA-TT
14747302 TGATGATGAT
1 TGATGATGAT
14747312 GAGGAGGAAT
Statistics
Matches: 62, Mismatches: 2, Indels: 9
0.85 0.03 0.12
Matches are distributed among these distances:
9 7 0.11
10 1 0.02
11 4 0.06
12 49 0.79
13 1 0.02
ACGTcount: A:0.27, C:0.00, G:0.32, T:0.42
Consensus pattern (11 bp):
TGATGATGATT
Found at i:14747271 original size:24 final size:24
Alignment explanation
Indices: 14747233--14747310 Score: 117
Period size: 24 Copynumber: 3.4 Consensus size: 24
14747223 TAGATGAAAG
14747233 TGATGATGA--TT-ATGATGAGTT
1 TGATGATGAGTTTGATGATGAGTT
* *
14747254 TGGTGATGAGTTTGATGATGAATT
1 TGATGATGAGTTTGATGATGAGTT
14747278 TGATGATGAGTTTGATGATGAGTT
1 TGATGATGAGTTTGATGATGAGTT
14747302 TGATGATGA
1 TGATGATGA
14747311 TGAGGAGGAA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
21 8 0.16
23 2 0.04
24 40 0.80
ACGTcount: A:0.27, C:0.00, G:0.32, T:0.41
Consensus pattern (24 bp):
TGATGATGAGTTTGATGATGAGTT
Found at i:14747284 original size:36 final size:34
Alignment explanation
Indices: 14747233--14747310 Score: 122
Period size: 36 Copynumber: 2.3 Consensus size: 34
14747223 TAGATGAAAG
*
14747233 TGATGATG-ATTATGATGAGTTTGGTGATGAGTT
1 TGATGATGAATTATGATGAGTTTGATGATGAGTT
14747266 TGATGATGAATTTGATGATGAGTTTGATGATGAGTT
1 TGATGATGAA-TT-ATGATGAGTTTGATGATGAGTT
14747302 TGATGATGA
1 TGATGATGA
14747311 TGAGGAGGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
33 8 0.20
34 1 0.02
35 2 0.05
36 30 0.73
ACGTcount: A:0.27, C:0.00, G:0.32, T:0.41
Consensus pattern (34 bp):
TGATGATGAATTATGATGAGTTTGATGATGAGTT
Found at i:14747892 original size:21 final size:21
Alignment explanation
Indices: 14747868--14747907 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14747858 CATGGCAAAG
14747868 GAGGCGGAGGTGGTGGTGGGA
1 GAGGCGGAGGTGGTGGTGGGA
* *
14747889 GAGGTGGTGGTGGTGGTGG
1 GAGGCGGAGGTGGTGGTGG
14747908 CGGTAGCGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.03, G:0.68, T:0.20
Consensus pattern (21 bp):
GAGGCGGAGGTGGTGGTGGGA
Found at i:14747960 original size:9 final size:9
Alignment explanation
Indices: 14747948--14747977 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14747938 CCAAATGGAT
14747948 GGTCAGATG
1 GGTCAGATG
*
14747957 GGTCACATG
1 GGTCAGATG
14747966 GGTCAGATG
1 GGTCAGATG
14747975 GGT
1 GGT
14747978 TATAATATGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.20, C:0.13, G:0.43, T:0.23
Consensus pattern (9 bp):
GGTCAGATG
Found at i:14747966 original size:21 final size:18
Alignment explanation
Indices: 14747924--14747977 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
14747914 CGGTAAGAAT
* *
14747924 ATGGGGCAGATGGGCCAA
1 ATGGGTCAGATGGGTCAA
*
14747942 ATGGATGGTCAGATGGGTCAC
1 AT-G--GGTCAGATGGGTCAA
14747963 ATGGGTCAGATGGGT
1 ATGGGTCAGATGGGT
14747978 TATAATATGG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 14 0.47
19 1 0.03
20 1 0.03
21 14 0.47
ACGTcount: A:0.24, C:0.13, G:0.43, T:0.20
Consensus pattern (18 bp):
ATGGGTCAGATGGGTCAA
Found at i:14757931 original size:12 final size:12
Alignment explanation
Indices: 14757914--14757939 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14757904 AGGAGTGTTT
14757914 CACTGAAAGATC
1 CACTGAAAGATC
14757926 CACTGAAAGATC
1 CACTGAAAGATC
14757938 CA
1 CA
14757940 AAAACAAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.27, G:0.15, T:0.15
Consensus pattern (12 bp):
CACTGAAAGATC
Found at i:14776472 original size:25 final size:25
Alignment explanation
Indices: 14776438--14776494 Score: 87
Period size: 25 Copynumber: 2.3 Consensus size: 25
14776428 AAAAGCTTGA
*
14776438 ATCATTGTATTAATCTGTCTGTTTT
1 ATCATTGTATTAATCTGTCTGATTT
*
14776463 ATCATTGTATTCATCTGTCTGATTT
1 ATCATTGTATTAATCTGTCTGATTT
*
14776488 ATTATTG
1 ATCATTG
14776495 ATTTTACTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.54
Consensus pattern (25 bp):
ATCATTGTATTAATCTGTCTGATTT
Found at i:14778746 original size:13 final size:13
Alignment explanation
Indices: 14778728--14778771 Score: 54
Period size: 13 Copynumber: 3.4 Consensus size: 13
14778718 TTTTATTGAG
*
14778728 TTAAAATCTTAAA
1 TTAAAATATTAAA
14778741 TTAAAATATTAAA
1 TTAAAATATTAAA
*
14778754 -TAATAATATAAAA
1 TTAA-AATATTAAA
14778767 TTAAA
1 TTAAA
14778772 TAAATAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 3 0.11
13 21 0.78
14 3 0.11
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (13 bp):
TTAAAATATTAAA
Found at i:14778785 original size:19 final size:18
Alignment explanation
Indices: 14778742--14778785 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
14778732 AATCTTAAAT
*
14778742 TAAAATATTAAATAATAA
1 TAAAAAATTAAATAATAA
*
14778760 TATAAAATTAAATAAATAA
1 TAAAAAATTAAAT-AATAA
14778779 TAAAAAA
1 TAAAAAA
14778786 ATATTTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAAAAATTAAATAATAA
Found at i:14782652 original size:43 final size:43
Alignment explanation
Indices: 14782573--14782660 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
14782563 TTTAACGATA
* * *
14782573 CTCTTATAAAAGAAACACATGCCTTTGGAGGGTTTGGTGAAAC
1 CTCTCATAAAAGAAACACATGCCTTTGAAGGCTTTGGTGAAAC
* *
14782616 CTCTCATAAAAGAAACACATGTCTTTTAAGGCTTTGGTGAAAC
1 CTCTCATAAAAGAAACACATGCCTTTGAAGGCTTTGGTGAAAC
14782659 CT
1 CT
14782661 ATAACTGAAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (43 bp):
CTCTCATAAAAGAAACACATGCCTTTGAAGGCTTTGGTGAAAC
Found at i:14783617 original size:13 final size:13
Alignment explanation
Indices: 14783601--14783651 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
14783591 CTAAATTCGG
14783601 ACCTCAAATCCAA
1 ACCTCAAATCCAA
*
14783614 ACCTTAAATCCTAA
1 ACCTCAAATCC-AA
* *
14783628 ATCTCAAATTCAA
1 ACCTCAAATCCAA
*
14783641 ACCTTAAATCC
1 ACCTCAAATCC
14783652 TAAATCATAA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
13 20 0.67
14 10 0.33
ACGTcount: A:0.43, C:0.31, G:0.00, T:0.25
Consensus pattern (13 bp):
ACCTCAAATCCAA
Found at i:14783630 original size:7 final size:7
Alignment explanation
Indices: 14783606--14783729 Score: 61
Period size: 7 Copynumber: 18.4 Consensus size: 7
14783596 TTCGGACCTC
14783606 AAATCC-
1 AAATCCT
14783612 AAA-CCTT
1 AAATCC-T
14783619 AAATCCT
1 AAATCCT
14783626 AAAT-CT
1 AAATCCT
*
14783632 CAAATTC-
1 -AAATCCT
14783639 AAA-CCTT
1 AAATCC-T
14783646 AAATCCT
1 AAATCCT
*
14783653 AAATCAT
1 AAATCCT
14783660 AAAT-CT
1 AAATCCT
*
14783666 AAACCCT
1 AAATCCT
*
14783673 AAATCAT
1 AAATCCT
14783680 AAA-CCT
1 AAATCCT
14783686 AAA-CCTT
1 AAATCC-T
*
14783693 AAACCCT
1 AAATCCT
*
14783700 AACT-CT
1 AAATCCT
*
14783706 AAATCTT
1 AAATCCT
14783713 AAA-CACT
1 AAATC-CT
*
14783720 AAAACCT
1 AAATCCT
14783727 AAA
1 AAA
14783730 CTTTACGTAT
Statistics
Matches: 92, Mismatches: 12, Indels: 27
0.70 0.09 0.21
Matches are distributed among these distances:
5 3 0.03
6 25 0.27
7 56 0.61
8 8 0.09
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.25
Consensus pattern (7 bp):
AAATCCT
Found at i:14783641 original size:27 final size:27
Alignment explanation
Indices: 14783603--14783682 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
14783593 AAATTCGGAC
*
14783603 CTCAAATCCAAACCTTAAATCCTAAAT
1 CTCAAATTCAAACCTTAAATCCTAAAT
14783630 CTCAAATTCAAACCTTAAATCCTAAAT
1 CTCAAATTCAAACCTTAAATCCTAAAT
* *
14783657 CAT-AAA-TCTAAACCCTAAATCATAAA
1 C-TCAAATTC-AAACCTTAAATCCTAAA
14783683 CCTAAACCTT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
26 2 0.04
27 45 0.94
28 1 0.02
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (27 bp):
CTCAAATTCAAACCTTAAATCCTAAAT
Found at i:14783667 original size:13 final size:13
Alignment explanation
Indices: 14783639--14783708 Score: 52
Period size: 13 Copynumber: 5.2 Consensus size: 13
14783629 TCTCAAATTC
*
14783639 AAACCTTAAATCCT
1 AAACCATAAAT-CT
*
14783653 AAATCATAAATCT
1 AAACCATAAATCT
*
14783666 AAACCCTAAATCAT
1 AAACCATAAATC-T
*
14783680 AAACC-TAAACCTT
1 AAACCATAAATC-T
* *
14783693 AAACCCTAACTCT
1 AAACCATAAATCT
14783706 AAA
1 AAA
14783709 TCTTAAACAC
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
13 27 0.59
14 19 0.41
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (13 bp):
AAACCATAAATCT
Found at i:14783668 original size:20 final size:20
Alignment explanation
Indices: 14783645--14783715 Score: 72
Period size: 20 Copynumber: 3.5 Consensus size: 20
14783635 ATTCAAACCT
14783645 TAAATCCTAAATCATAAATC
1 TAAATCCTAAATCATAAATC
* *
14783665 TAAACCCTAAATCATAAACC
1 TAAATCCTAAATCATAAATC
* * *
14783685 TAAA-CCTTAAACCCTAACTC
1 TAAATCC-TAAATCATAAATC
*
14783705 TAAATCTTAAA
1 TAAATCCTAAA
14783716 CACTAAAACC
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
19 2 0.05
20 39 0.93
21 1 0.02
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (20 bp):
TAAATCCTAAATCATAAATC
Found at i:14783716 original size:20 final size:20
Alignment explanation
Indices: 14783663--14783721 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
14783653 AAATCATAAA
*
14783663 TCTAAACCCTAAATCA-TAAAC
1 TCTAAACCTTAAA-CACT-AAC
*
14783684 -CTAAACCTTAAACCCTAAC
1 TCTAAACCTTAAACACTAAC
*
14783703 TCTAAATCTTAAACACTAA
1 TCTAAACCTTAAACACTAA
14783722 AACCTAAACT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
19 4 0.12
20 28 0.88
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (20 bp):
TCTAAACCTTAAACACTAAC
Done.