Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 73 of 77
Found at i:14787261 original size:20 final size:20
Alignment explanation
Indices: 14787217--14787281 Score: 62
Period size: 20 Copynumber: 3.2 Consensus size: 20
14787207 ACCTTAAATA
* *
14787217 CTAATTCCTAAATT-CAAAC
1 CTAAATCCTAAATTATAAAC
*
14787236 CTTAAATCCTAAATTATAAAT
1 C-TAAATCCTAAATTATAAAC
*
14787257 CTAAA-CCTTAAATCATAAAC
1 CTAAATCC-TAAATTATAAAC
14787277 CTAAA
1 CTAAA
14787282 CCTTAAACCC
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
19 3 0.08
20 31 0.82
21 4 0.11
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.31
Consensus pattern (20 bp):
CTAAATCCTAAATTATAAAC
Found at i:14787268 original size:7 final size:7
Alignment explanation
Indices: 14787258--14787363 Score: 69
Period size: 7 Copynumber: 15.6 Consensus size: 7
14787248 ATTATAAATC
14787258 TAAACCT
1 TAAACCT
* *
14787265 TAAATCA
1 TAAACCT
14787272 TAAACC-
1 TAAACCT
14787278 TAAACCT
1 TAAACCT
*
14787285 TAAACCC
1 TAAACCT
14787292 T-AA-CT
1 TAAACCT
*
14787297 CTAAATCT
1 -TAAACCT
14787305 TAAACACT
1 TAAAC-CT
*
14787313 AAAACC-
1 TAAACCT
*
14787319 TAAACTT
1 TAAACCT
14787326 TAAACCT
1 TAAACCT
**
14787333 T-AATTT
1 TAAACCT
*
14787339 TGAACCT
1 TAAACCT
14787346 TAAACCT
1 TAAACCT
*
14787353 CAAACCT
1 TAAACCT
14787360 TAAA
1 TAAA
14787364 ACACTAATAA
Statistics
Matches: 75, Mismatches: 17, Indels: 14
0.71 0.16 0.13
Matches are distributed among these distances:
5 1 0.01
6 17 0.23
7 49 0.65
8 8 0.11
ACGTcount: A:0.45, C:0.25, G:0.01, T:0.28
Consensus pattern (7 bp):
TAAACCT
Found at i:14787270 original size:27 final size:28
Alignment explanation
Indices: 14787199--14787275 Score: 88
Period size: 27 Copynumber: 2.8 Consensus size: 28
14787189 TTCGGACCTC
* * *
14787199 AAATCCAAACCTTAAATACT-AATTCCT
1 AAATCTAAACCTTAAATCCTAAATTCAT
14787226 AAAT-TCAAACCTTAAATCCTAAATT-AT
1 AAATCT-AAACCTTAAATCCTAAATTCAT
*
14787253 AAATCTAAACCTTAAATCATAAA
1 AAATCTAAACCTTAAATCCTAAA
14787276 CCTAAACCTT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
27 38 0.88
28 5 0.12
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.30
Consensus pattern (28 bp):
AAATCTAAACCTTAAATCCTAAATTCAT
Found at i:14787282 original size:20 final size:20
Alignment explanation
Indices: 14787232--14787329 Score: 76
Period size: 20 Copynumber: 4.8 Consensus size: 20
14787222 TCCTAAATTC
*
14787232 AAACCTTAAATCC-TAAATTAT
1 AAACC-TAAA-CCTTAAATCAT
*
14787253 AAATCTAAACCTTAAATCAT
1 AAACCTAAACCTTAAATCAT
* *
14787273 AAACCTAAACCTTAAACCCT
1 AAACCTAAACCTTAAATCAT
*
14787293 -AACTCTAAATCTTAAA-CACT
1 AAAC-CTAAACCTTAAATCA-T
*
14787313 AAAACCTAAACTTTAAA
1 -AAACCTAAACCTTAAA
14787330 CCTTAATTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
19 6 0.10
20 40 0.63
21 14 0.22
22 3 0.05
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.28
Consensus pattern (20 bp):
AAACCTAAACCTTAAATCAT
Found at i:14787697 original size:17 final size:16
Alignment explanation
Indices: 14787665--14787698 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
14787655 TTTGTGCTTA
*
14787665 TGATTTATTATGATAT
1 TGATTTATTATAATAT
14787681 TGATTTATTTATAATAT
1 TGATTTA-TTATAATAT
14787698 T
1 T
14787699 TTGATTAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (16 bp):
TGATTTATTATAATAT
Found at i:14789461 original size:13 final size:13
Alignment explanation
Indices: 14789445--14789515 Score: 54
Period size: 13 Copynumber: 5.3 Consensus size: 13
14789435 AGCTTAACAC
*
14789445 TAAATCATAAACT
1 TAAATCCTAAACT
14789458 TAAATCCTAAATCT
1 TAAATCCTAAA-CT
* * * *
14789472 TATA-CTGTAACCA
1 TAAATC-CTAAACT
14789485 TAAATCCTAAACT
1 TAAATCCTAAACT
*
14789498 TAAATCGTAAACCT
1 TAAATCCTAAA-CT
14789512 TAAA
1 TAAA
14789516 CTTTAAAATA
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
13 29 0.66
14 15 0.34
ACGTcount: A:0.46, C:0.20, G:0.03, T:0.31
Consensus pattern (13 bp):
TAAATCCTAAACT
Found at i:14789467 original size:20 final size:20
Alignment explanation
Indices: 14789444--14789518 Score: 73
Period size: 20 Copynumber: 3.8 Consensus size: 20
14789434 AAGCTTAACA
*
14789444 CTAAATCATAAACTTAAATC
1 CTAAATCTTAAACTTAAATC
*
14789464 CTAAATCTTATACTGT-AA-C
1 CTAAATCTTAAACT-TAAATC
*
14789483 CATAAATCCTAAACTTAAATC
1 C-TAAATCTTAAACTTAAATC
* *
14789504 GTAAACCTTAAACTT
1 CTAAATCTTAAACTT
14789519 TAAAATATAA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
19 3 0.07
20 39 0.89
21 2 0.05
ACGTcount: A:0.44, C:0.21, G:0.03, T:0.32
Consensus pattern (20 bp):
CTAAATCTTAAACTTAAATC
Found at i:14789661 original size:20 final size:21
Alignment explanation
Indices: 14789626--14789672 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
14789616 ATCTAACACT
*
14789626 AACCCTAAACCATAAATCT-A
1 AACCCTAAACCATAAACCTCA
**
14789646 AACCCTAAACTTTAAACCTCA
1 AACCCTAAACCATAAACCTCA
14789667 AACCCT
1 AACCCT
14789673 TAAATCTATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (21 bp):
AACCCTAAACCATAAACCTCA
Found at i:14789708 original size:14 final size:14
Alignment explanation
Indices: 14789630--14789833 Score: 50
Period size: 14 Copynumber: 14.9 Consensus size: 14
14789620 AACACTAACC
*
14789630 CTAAACCATAAA-T
1 CTAAACCCTAAACT
14789643 CTAAACCCTAAACT
1 CTAAACCCTAAACT
* *
14789657 TTAAA-CCTCAAACC
1 CTAAACCCT-AAACT
* * *
14789671 CTTAAA-TCT-ATCC
1 C-TAAACCCTAAACT
*
14789684 CT-AACCTTAAACT
1 CTAAACCCTAAACT
*
14789697 CTAAACCCTAAATT
1 CTAAACCCTAAACT
* * * *
14789711 TTCAATCCTAAAACA
1 CTAAACCCT-AAACT
*
14789726 C-AAACTCTAAAC-
1 CTAAACCCTAAACT
* *
14789738 CTTAAA-CATACACT
1 C-TAAACCCTAAACT
* * *
14789752 TTAAACCCTAAGCC
1 CTAAACCCTAAACT
*
14789766 CTCAAACCTTACAACT
1 CT-AAACCCTA-AACT
*
14789782 CT-AAGCCTAAACT
1 CTAAACCCTAAACT
* *
14789795 TTAAACCCTAAA-A
1 CTAAACCCTAAACT
* * *
14789808 CTAAATCTTAAACC
1 CTAAACCCTAAACT
*
14789822 CTAAATCCTAAA
1 CTAAACCCTAAA
14789834 ACATAACCCT
Statistics
Matches: 133, Mismatches: 43, Indels: 29
0.65 0.21 0.14
Matches are distributed among these distances:
11 2 0.02
12 3 0.02
13 48 0.36
14 60 0.45
15 16 0.12
16 4 0.03
ACGTcount: A:0.43, C:0.30, G:0.01, T:0.25
Consensus pattern (14 bp):
CTAAACCCTAAACT
Found at i:14789853 original size:20 final size:20
Alignment explanation
Indices: 14789817--14789873 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
14789807 ACTAAATCTT
14789817 AAACCCTAAATCC-TAAAAC-
1 AAACCCTAAA-CCTTAAAACG
*
14789836 ATAACCCTAAACCTTAAATCG
1 A-AACCCTAAACCTTAAAACG
*
14789857 AAACTCTAAACCTTAAA
1 AAACCCTAAACCTTAAA
14789874 TTTTAATTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
19 3 0.09
20 29 0.88
21 1 0.03
ACGTcount: A:0.49, C:0.28, G:0.02, T:0.21
Consensus pattern (20 bp):
AAACCCTAAACCTTAAAACG
Found at i:14790108 original size:7 final size:7
Alignment explanation
Indices: 14790096--14790534 Score: 174
Period size: 7 Copynumber: 66.4 Consensus size: 7
14790086 CTATAAACCC
14790096 AACCTTA
1 AACCTTA
14790103 AACCTTA
1 AACCTTA
*
14790110 AACCTAA
1 AACCTTA
* *
14790117 AATCATA
1 AACCTTA
14790124 AACC-TA
1 AACCTTA
* *
14790130 GACCCT-
1 AACCTTA
14790136 AACCTTA
1 AACCTTA
*
14790143 AACC-CA
1 AACCTTA
14790149 AAGCC-TA
1 AA-CCTTA
* *
14790156 AACATTG
1 AACCTTA
**
14790163 AACAATA
1 AACCTTA
*
14790170 AACCTAAA
1 AACCT-TA
*
14790178 AAAC-T-
1 AACCTTA
*
14790183 AACCCT-
1 AACCTTA
14790189 AACC-TA
1 AACCTTA
14790195 AACC-T-
1 AACCTTA
14790200 AACC-TA
1 AACCTTA
14790206 AACCTTA
1 AACCTTA
14790213 AACCTTA
1 AACCTTA
*
14790220 AACC-GA
1 AACCTTA
14790226 AACAC-TA
1 AAC-CTTA
14790233 AACC--A
1 AACCTTA
*
14790238 AAACTTA
1 AACCTTA
14790245 AA-CTTA
1 AACCTTA
*
14790251 AACCCTA
1 AACCTTA
* *
14790258 AATCGTA
1 AACCTTA
**
14790265 AATTTTAA
1 AACCTT-A
14790273 AACC-TA
1 AACCTTA
*
14790279 AACCCTA
1 AACCTTA
14790286 AA-CTCT-
1 AACCT-TA
14790292 AACCTTA
1 AACCTTA
*
14790299 AACCCT-
1 AACCTTA
*
14790305 AACCCTA
1 AACCTTA
**
14790312 AACCCCA
1 AACCTTA
14790319 AA-CTTA
1 AACCTTA
*
14790325 AACCCTA
1 AACCTTA
* *
14790332 AA-GTTT
1 AACCTTA
* *
14790338 TACCCT-
1 AACCTTA
14790344 AACCTTAA
1 AACCTT-A
*
14790352 AACCTAA
1 AACCTTA
*
14790359 AACCCT-
1 AACCTTA
*
14790365 AACCCTA
1 AACCTTA
*
14790372 AACCCTA
1 AACCTTA
14790379 AACCTTA
1 AACCTTA
14790386 AATCC-TA
1 AA-CCTTA
*
14790393 AACCATA
1 AACCTTA
14790400 AA-CTTA
1 AACCTTA
*
14790406 AACCCT-
1 AACCTTA
*
14790412 AACTTTA
1 AACCTTA
*
14790419 AACCATA
1 AACCTTA
14790426 AACC-TA
1 AACCTTA
14790432 AACCTT-
1 AACCTTA
*
14790438 AACCCTA
1 AACCTTA
14790445 AACAC-TA
1 AAC-CTTA
14790452 AACC-TA
1 AACCTTA
14790458 AACCTTA
1 AACCTTA
*
14790465 AACCTCA
1 AACCTTA
14790472 AACCTTAA
1 AACCTT-A
14790480 AACC-T-
1 AACCTTA
14790485 AACCTTA
1 AACCTTA
*
14790492 ACCCTTA
1 AACCTTA
14790499 AACCTTA
1 AACCTTA
14790506 AACCTTA
1 AACCTTA
14790513 AA-CTTA
1 AACCTTA
14790519 AACC-TA
1 AACCTTA
*
14790525 TACCTTA
1 AACCTTA
14790532 AAC
1 AAC
14790535 TATAAACCCC
Statistics
Matches: 334, Mismatches: 61, Indels: 74
0.71 0.13 0.16
Matches are distributed among these distances:
5 17 0.05
6 110 0.33
7 187 0.56
8 20 0.06
ACGTcount: A:0.46, C:0.31, G:0.01, T:0.22
Consensus pattern (7 bp):
AACCTTA
Found at i:14790200 original size:11 final size:11
Alignment explanation
Indices: 14790181--14790210 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
14790171 ACCTAAAAAA
*
14790181 CTAACCCTAAC
1 CTAAACCTAAC
14790192 CTAAACCTAAC
1 CTAAACCTAAC
14790203 CTAAACCT
1 CTAAACCT
14790211 TAAACCTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (11 bp):
CTAAACCTAAC
Found at i:14790228 original size:20 final size:20
Alignment explanation
Indices: 14790096--14790534 Score: 195
Period size: 20 Copynumber: 22.1 Consensus size: 20
14790086 CTATAAACCC
*
14790096 AACCTTAAACCTTAAACCTAA
1 AACCTTAAACC-TAAACCTTA
* * * *
14790117 AATCATAAACCTAGACCCT-
1 AACCTTAAACCTAAACCTTA
*
14790136 AACCTTAAACCCAAAGCC-TA
1 AACCTTAAACCTAAA-CCTTA
* * * *
14790156 AACATTGAACAATAAACCTAAA
1 AACCTTAAAC-CTAAACCT-TA
* *
14790178 AAAC-TAACCCT-AACC-TA
1 AACCTTAAACCTAAACCTTA
14790195 AACC-T-AACCTAAACCTTA
1 AACCTTAAACCTAAACCTTA
*
14790213 AACCTTAAACCGAAACAC-TA
1 AACCTTAAACCTAAAC-CTTA
* *
14790233 AACC-AAAACTTAAA-CTTA
1 AACCTTAAACCTAAACCTTA
* * **
14790251 AACCCTAAATCGTAAATTTTAA
1 AACCTTAAA-CCTAAACCTT-A
14790273 AACC-TAAACCCTAAA-CTCT-
1 AACCTTAAA-CCTAAACCT-TA
*
14790292 AACCTTAAACCCT-AACCCTA
1 AACCTTAAA-CCTAAACCTTA
** * *
14790312 AACCCCAAACTTAAACCCTA
1 AACCTTAAACCTAAACCTTA
** * *
14790332 AAGTTTTACCCT-AACCTTAA
1 AACCTTAAACCTAAACCTT-A
* *
14790352 AACCTAAAACCCT-AACCCTA
1 AACCTTAAA-CCTAAACCTTA
*
14790372 AACCCTAAACCTTAAATCC-TA
1 AACCTTAAACC-TAAA-CCTTA
* * *
14790393 AACCATAAACTTAAACCCT-
1 AACCTTAAACCTAAACCTTA
*
14790412 AACTTTAAACCATAAACC-TA
1 AACCTTAAACC-TAAACCTTA
*
14790432 AACCTTAACCCTAAACAC-TA
1 AACCTTAAACCTAAAC-CTTA
*
14790452 AACC-TAAACCTTAAACCTCA
1 AACCTTAAACC-TAAACCTTA
14790472 AACCTTAAAACCT-AACCTTA
1 AACCTT-AAACCTAAACCTTA
*
14790492 ACCCTTAAACCTTAAACCTTA
1 AACCTTAAACC-TAAACCTTA
*
14790513 AA-CTTAAACCTATACCTTA
1 AACCTTAAACCTAAACCTTA
14790532 AAC
1 AAC
14790535 TATAAACCCC
Statistics
Matches: 317, Mismatches: 65, Indels: 73
0.70 0.14 0.16
Matches are distributed among these distances:
16 4 0.01
17 10 0.03
18 12 0.04
19 80 0.25
20 137 0.43
21 59 0.19
22 15 0.05
ACGTcount: A:0.46, C:0.31, G:0.01, T:0.22
Consensus pattern (20 bp):
AACCTTAAACCTAAACCTTA
Found at i:14790308 original size:26 final size:26
Alignment explanation
Indices: 14790018--14790566 Score: 158
Period size: 26 Copynumber: 20.8 Consensus size: 26
14790008 ACCCTAATTG
* * *
14790018 TAACCCTAAAACCTAACCTTATACCT
1 TAACCCTAAACCCTAACCTTAAACCC
*** * **
14790044 TAAATTTAAACCTTCAACCCCAAACCC
1 TAACCCTAAACCCT-AACCTTAAACCC
* *
14790071 AAACACT-AACCCTAA-CTATAAACCC
1 TAACCCTAAACCCTAACCT-TAAACCC
* * * * *
14790096 -AACCTTAAACCTTAAACCTAAAATCA
1 TAACCCTAAACCCT-AACCTTAAACCC
* *
14790122 TAAACCTAGACCCTAACCTTAAACCC
1 TAACCCTAAACCCTAACCTTAAACCC
* * ** **
14790148 AAAGCCTAAACATTGAACAATAAA-CC
1 TAACCCTAAACCCT-AACCTTAAACCC
**
14790174 TAAAAAACT-AACCCTAACC-TAAA-CC
1 T--AACCCTAAACCCTAACCTTAAACCC
* *
14790199 TAA-CCTAAACCTTAAACCTTAAACCG
1 TAACCCTAAACCCT-AACCTTAAACCC
* * * * *
14790225 AAACACTAAA-CCAAAACTTAAA-CT
1 TAACCCTAAACCCTAACCTTAAACCC
* * ** *
14790249 TAAACCCTAAATCGTAAATTTTAAAACC
1 T-AACCCTAAACCCT-AACCTTAAACCC
*
14790277 TAAACCCTAAACTCTAACCTTAAACCC
1 T-AACCCTAAACCCTAACCTTAAACCC
* *
14790304 TAACCCTAAACCCCAAACTTAAACCC
1 TAACCCTAAACCCTAACCTTAAACCC
*** ** *
14790330 TAAAGTTTTACCCTAACCTTAAAACC
1 TAACCCTAAACCCTAACCTTAAACCC
* *
14790356 TAAAACCCT-AACCCTAAACCCTAAACCT
1 T--AACCCTAAACCCT-AACCTTAAACCC
* * *
14790384 TAAATCCTAAACCATAAACTTAAACCC
1 T-AACCCTAAACCCTAACCTTAAACCC
** * *
14790411 TAACTTTAAACCATAAACC-TAAACCT
1 TAACCCTAAACCCT-AACCTTAAACCC
* *
14790437 TAACCCTAAACACTAAACC-TAAACCT
1 TAACCCTAAACCCT-AACCTTAAACCC
* * *
14790463 TAAACCTCAAACCTTAAAACC-T-AACCT
1 TAACCCT-AAACCCT--AACCTTAAACCC
* *
14790490 TAACCCTTAAACCTTAAACCTTAAA-CT
1 TAACCC-TAAACCCT-AACCTTAAACCC
* * * *
14790517 TAAACCTATACCTTAAACTATAAACCCC
1 TAACCCTAAACCCTAACCT-TAAA-CCC
* *
14790545 AAACCCTAAAACCTAACCTTAA
1 TAACCCTAAACCCTAACCTTAA
14790567 CTTTAAAACC
Statistics
Matches: 382, Mismatches: 110, Indels: 61
0.69 0.20 0.11
Matches are distributed among these distances:
22 2 0.01
23 7 0.02
24 10 0.03
25 44 0.12
26 149 0.39
27 112 0.29
28 58 0.15
ACGTcount: A:0.45, C:0.32, G:0.01, T:0.22
Consensus pattern (26 bp):
TAACCCTAAACCCTAACCTTAAACCC
Found at i:14790502 original size:34 final size:34
Alignment explanation
Indices: 14790452--14790567 Score: 110
Period size: 34 Copynumber: 3.3 Consensus size: 34
14790442 CTAAACACTA
*
14790452 AACC-TAAACCTTAAACCTCAAACCTTAAAACCT
1 AACCTTAACCCTTAAACCTCAAACCTTAAAACCT
*
14790485 AACCTTAACCCTTAAACCTTAAACCTTAAACTTAAACCT
1 AACCTTAACCCTTAAACCTCAAACCTT--A---AAACCT
* * *
14790524 ATACCTTAA-ACTATAAACCCCAAACCCTAAAACCT
1 A-ACCTTAACCCT-TAAACCTCAAACCTTAAAACCT
14790559 AACCTTAAC
1 AACCTTAAC
14790568 TTTAAAACCA
Statistics
Matches: 68, Mismatches: 6, Indels: 16
0.76 0.07 0.18
Matches are distributed among these distances:
33 4 0.06
34 27 0.40
35 7 0.10
36 1 0.01
38 1 0.01
39 9 0.13
40 19 0.28
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.23
Consensus pattern (34 bp):
AACCTTAACCCTTAAACCTCAAACCTTAAAACCT
Found at i:14790520 original size:13 final size:13
Alignment explanation
Indices: 14790189--14790534 Score: 190
Period size: 13 Copynumber: 26.8 Consensus size: 13
14790179 AACTAACCCT
14790189 AACC-TAAACCT-
1 AACCTTAAACCTA
14790200 AACC-TAAACCTTA
1 AACCTTAAACC-TA
*
14790213 AACCTTAAACCGA
1 AACCTTAAACCTA
14790226 AACAC-TAAACC-A
1 AAC-CTTAAACCTA
* *
14790238 AAACTTAAACTTA
1 AACCTTAAACCTA
* *
14790251 AACCCTAAATCGTA
1 AACCTTAAA-CCTA
**
14790265 AATTTTAAAACCTA
1 AACCTT-AAACCTA
*
14790279 AACCCTAAACTCT-
1 AACCTTAAAC-CTA
14790292 AACCTTAAACCCT-
1 AACCTTAAA-CCTA
* *
14790305 AACCCTAAACCCCA
1 AACCTTAAA-CCTA
14790319 AA-CTTAAACCCTA
1 AACCTTAAA-CCTA
** * *
14790332 AAGTTTTACCCT-
1 AACCTTAAACCTA
14790344 AACCTTAAAACCT-
1 AACCTT-AAACCTA
*
14790357 AA----AACCCT-
1 AACCTTAAACCTA
*
14790365 AACCCTAAACCCTA
1 AACCTTAAA-CCTA
14790379 AACCTTAAATCCTA
1 AACCTTAAA-CCTA
* *
14790393 AACCATAAACTTA
1 AACCTTAAACCTA
* *
14790406 AACCCT-AACTTTA
1 AACCTTAAAC-CTA
*
14790419 AACCATAAACCTA
1 AACCTTAAACCTA
*
14790432 AACCTTAACCCTA
1 AACCTTAAACCTA
14790445 AACAC-TAAACCTA
1 AAC-CTTAAACCTA
14790458 AACCTTAAACCTCA
1 AACCTTAAACCT-A
14790472 AACCTTAAAACCT-
1 AACCTT-AAACCTA
*
14790485 AACCTTAACCCTTA
1 AACCTTAAACC-TA
14790499 AACCTTAAACCTTA
1 AACCTTAAACC-TA
14790513 AA-CTTAAACCTA
1 AACCTTAAACCTA
*
14790525 TACCTTAAAC
1 AACCTTAAAC
14790535 TATAAACCCC
Statistics
Matches: 267, Mismatches: 40, Indels: 54
0.74 0.11 0.15
Matches are distributed among these distances:
8 7 0.03
11 11 0.04
12 26 0.10
13 141 0.53
14 73 0.27
15 9 0.03
ACGTcount: A:0.45, C:0.32, G:0.01, T:0.23
Consensus pattern (13 bp):
AACCTTAAACCTA
Found at i:14790559 original size:7 final size:7
Alignment explanation
Indices: 14790344--14790560 Score: 52
Period size: 7 Copynumber: 32.0 Consensus size: 7
14790334 GTTTTACCCT
14790344 AACCTTAA
1 AACC-TAA
14790352 AACCTAA
1 AACCTAA
14790359 AACCCT-A
1 AA-CCTAA
*
14790366 ACCCTAA
1 AACCTAA
*
14790373 ACCCT-A
1 AACCTAA
14790379 AACCTTAA
1 AACC-TAA
*
14790387 ATCCT-A
1 AACCTAA
14790393 AACC-ATA
1 AACCTA-A
*
14790400 AACTTAA
1 AACCTAA
*
14790407 ACCCT--
1 AACCTAA
* *
14790412 AACTTTA
1 AACCTAA
14790419 AACC-ATA
1 AACCTA-A
14790426 AACCT-A
1 AACCTAA
*
14790432 AACCTTA
1 AACCTAA
*
14790439 ACCCT-A
1 AACCTAA
14790445 AACACT-A
1 AAC-CTAA
14790452 AACCT-A
1 AACCTAA
*
14790458 AACCTTA
1 AACCTAA
*
14790465 AACCTCA
1 AACCTAA
14790472 AACCTTAA
1 AACC-TAA
14790480 AACCT--
1 AACCTAA
*
14790485 AACCTTA
1 AACCTAA
* *
14790492 ACCCTTA
1 AACCTAA
*
14790499 AACCTTA
1 AACCTAA
*
14790506 AACCTTA
1 AACCTAA
*
14790513 AA-CTTA
1 AACCTAA
14790519 AACCT-A
1 AACCTAA
* *
14790525 TACCTTA
1 AACCTAA
14790532 AA-CTATA
1 AACCTA-A
*
14790539 AACCCCAA
1 AA-CCTAA
*
14790547 ACCCTAA
1 AACCTAA
14790554 AACCTAA
1 AACCTAA
14790561 CCTTAACTTT
Statistics
Matches: 163, Mismatches: 24, Indels: 45
0.70 0.10 0.19
Matches are distributed among these distances:
5 8 0.05
6 41 0.25
7 92 0.56
8 20 0.12
9 2 0.01
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.22
Consensus pattern (7 bp):
AACCTAA
Found at i:14790576 original size:74 final size:73
Alignment explanation
Indices: 14790351--14790567 Score: 217
Period size: 73 Copynumber: 2.9 Consensus size: 73
14790341 CCTAACCTTA
* * * ** * *
14790351 AAACCTAAAACCCTAACCCTAAACCCTAAACCTTAAATCC-TAAACCATAAA-CTTAAACCCTAA
1 AAACCT-AAACCTTAAACCTAAACACTAAACC-TAAA-CCTTAAACCCCAAACCCTAAAACCTAA
* * *
14790414 CTTTAAACCAT
63 CCTTAACCCTT
* * *
14790425 AAACCTAAACCTTAACCCTAAACACTAAACCTAAACCTTAAACCTCAAACCTTAAAACCTAACCT
1 AAACCTAAACCTTAAACCTAAACACTAAACCTAAACCTTAAACCCCAAACCCTAAAACCTAACCT
14790490 TAACCCTT
66 TAACCCTT
* *
14790498 AAACCTTAAACCTTAAACTTAAAC-CTATACCTTAAA-CTATAAACCCCAAACCCTAAAACCTAA
1 AAACC-TAAACCTTAAACCTAAACACTAAACC-TAAACCT-TAAACCCCAAACCCTAAAACCTAA
14790561 CCTTAAC
63 CCTTAAC
14790568 TTTAAAACCA
Statistics
Matches: 125, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
71 2 0.02
72 13 0.10
73 55 0.44
74 55 0.44
ACGTcount: A:0.45, C:0.33, G:0.00, T:0.22
Consensus pattern (73 bp):
AAACCTAAACCTTAAACCTAAACACTAAACCTAAACCTTAAACCCCAAACCCTAAAACCTAACCT
TAACCCTT
Found at i:14790689 original size:7 final size:7
Alignment explanation
Indices: 14790659--14790768 Score: 63
Period size: 7 Copynumber: 16.4 Consensus size: 7
14790649 CCAAGTCCTA
14790659 AAACCA-
1 AAACCAT
14790665 AAACCCA-
1 AAA-CCAT
14790672 AAACCCA-
1 AAA-CCAT
14790679 AAACCAT
1 AAACCAT
14790686 AAACC-T
1 AAACCAT
*
14790692 AAACCTT
1 AAACCAT
14790699 AAACCAT
1 AAACCAT
14790706 AAACCAT
1 AAACCAT
*
14790713 AATCC-T
1 AAACCAT
* *
14790719 AATCCCT
1 AAACCAT
*
14790726 AAACCCT
1 AAACCAT
*
14790733 -AA-CTT
1 AAACCAT
*
14790738 AAACCCT
1 AAACCAT
**
14790745 AAACTTT
1 AAACCAT
*
14790752 AAACCTT
1 AAACCAT
14790759 AAACCAT
1 AAACCAT
14790766 AAA
1 AAA
14790769 TCGTAAATAG
Statistics
Matches: 89, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
5 2 0.02
6 22 0.25
7 65 0.73
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (7 bp):
AAACCAT
Found at i:14790689 original size:27 final size:27
Alignment explanation
Indices: 14790659--14790714 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
14790649 CCAAGTCCTA
14790659 AAACCAAAACCCAAAACCCA-AAACCAT
1 AAACCAAAACCCAAAA-CCATAAACCAT
* **
14790686 AAACCTAAACCTTAAACCATAAACCAT
1 AAACCAAAACCCAAAACCATAAACCAT
14790713 AA
1 AA
14790715 TCCTAATCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.12
27 22 0.88
ACGTcount: A:0.57, C:0.32, G:0.00, T:0.11
Consensus pattern (27 bp):
AAACCAAAACCCAAAACCATAAACCAT
Found at i:14790695 original size:20 final size:20
Alignment explanation
Indices: 14790658--14790711 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
14790648 CCCAAGTCCT
14790658 AAAACCA-AAACCCAAAACCC
1 AAAACCATAAA-CCAAAACCC
* *
14790678 AAAACCATAAACCTAAACCT
1 AAAACCATAAACCAAAACCC
*
14790698 TAAACCATAAACCA
1 AAAACCATAAACCA
14790712 TAATCCTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 26 0.90
21 3 0.10
ACGTcount: A:0.57, C:0.33, G:0.00, T:0.09
Consensus pattern (20 bp):
AAAACCATAAACCAAAACCC
Found at i:14790728 original size:20 final size:19
Alignment explanation
Indices: 14790679--14790748 Score: 61
Period size: 20 Copynumber: 3.6 Consensus size: 19
14790669 CCAAAACCCA
*
14790679 AAACCATAAACC-TAAACCTT
1 AAACCCTAAACCAT-AACC-T
*
14790699 AAACCATAAACCATAATCCT
1 AAACCCTAAACCATAA-CCT
* * *
14790719 AATCCCTAAACCCTAACTT
1 AAACCCTAAACCATAACCT
14790738 AAACCCTAAAC
1 AAACCCTAAAC
14790749 TTTAAACCTT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
19 12 0.28
20 28 0.65
21 3 0.07
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (19 bp):
AAACCCTAAACCATAACCT
Found at i:14792939 original size:2 final size:2
Alignment explanation
Indices: 14792932--14792956 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14792922 TTAGTTACAA
14792932 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
14792957 AGGCAGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:14796410 original size:39 final size:39
Alignment explanation
Indices: 14796317--14796410 Score: 109
Period size: 39 Copynumber: 2.4 Consensus size: 39
14796307 GATTGGATGG
* *
14796317 GGTGGGGAGGGATTAGGTGTGGTGAGGCGTTGGAGGGAA
1 GGTGGGGAGGGATTGGGTGTGATGAGGCGTTGGAGGGAA
** * *
14796356 GGTGGGGAGAAATTGGGTGTGATG-GGATGTTGGGGGGAA
1 GGTGGGGAGGGATTGGGTGTGATGAGG-CGTTGGAGGGAA
*
14796395 GGTGGAGAGGGATTGG
1 GGTGGGGAGGGATTGG
14796411 ATGAGGGTGG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
38 2 0.04
39 43 0.96
ACGTcount: A:0.19, C:0.01, G:0.59, T:0.21
Consensus pattern (39 bp):
GGTGGGGAGGGATTGGGTGTGATGAGGCGTTGGAGGGAA
Found at i:14796956 original size:25 final size:26
Alignment explanation
Indices: 14796928--14796976 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
14796918 TAAAAAATAA
14796928 AAAATATAAGTTTGAAAA-TTTTATT
1 AAAATATAAGTTTGAAAACTTTTATT
14796953 AAAATATAAGTTTGAAAACTTTTA
1 AAAATATAAGTTTGAAAACTTTTA
14796977 ATTTTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.49, C:0.02, G:0.08, T:0.41
Consensus pattern (26 bp):
AAAATATAAGTTTGAAAACTTTTATT
Found at i:14797229 original size:6 final size:6
Alignment explanation
Indices: 14797218--14797245 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
14797208 ATAAGAGTTT
14797218 TTATAA TTATAA TTATAA TTATAA TTAT
1 TTATAA TTATAA TTATAA TTATAA TTAT
14797246 TACATTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTATAA
Found at i:14803181 original size:58 final size:58
Alignment explanation
Indices: 14803037--14803245 Score: 201
Period size: 58 Copynumber: 3.6 Consensus size: 58
14803027 TTGTACAAAA
* * * * ** * **
14803037 AAAAAATTAATACTTTCAACTTTTTCTC-AAATTA-TTTTTTAGAAATTTTAATTTCG
1 AAAAAATTGATACTTTCAATTTTTTCTCAAAAATACATTTTTAGAAAACTTATTTTAT
* * *
14803093 AGAAAAATTGATACTTTCAACTTTTCCTCAAAAATCCATTTTT-GAAAACTTATTTT-T
1 A-AAAAATTGATACTTTCAATTTTTTCTCAAAAATACATTTTTAGAAAACTTATTTTAT
* ** *
14803150 AAGGAAAATTGATACTTTTAATTTTTTCTCAAAAATATTTTTTTAGAAAGCTTATTTTCAT
1 AA--AAAATTGATACTTTCAATTTTTTCTCAAAAATACATTTTTAGAAAACTTATTTT-AT
*
14803211 AAAAAATTGATACTTTCAATTTTTTTTCAAAAATA
1 AAAAAATTGATACTTTCAATTTTTTCTCAAAAATA
14803246 TTTTTTTTGA
Statistics
Matches: 127, Mismatches: 18, Indels: 13
0.80 0.11 0.08
Matches are distributed among these distances:
56 2 0.02
57 26 0.20
58 48 0.38
59 48 0.38
61 3 0.02
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.45
Consensus pattern (58 bp):
AAAAAATTGATACTTTCAATTTTTTCTCAAAAATACATTTTTAGAAAACTTATTTTAT
Found at i:14803246 original size:59 final size:59
Alignment explanation
Indices: 14803037--14803252 Score: 228
Period size: 59 Copynumber: 3.7 Consensus size: 59
14803027 TTGTACAAAA
* * ** *
14803037 AAAAAATTAATACTTTCAACTTTTTCTC-AAATTA-TTTTTTAGAAATTTTAATTTCGA-
1 AAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTAGAAAACTTATTTTC-AT
* * ***
14803094 GAAAAATTGATACTTTCAACTTTTCCTCAAAAATCCATTTTT-GAAAACTTATTTT--T
1 AAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTAGAAAACTTATTTTCAT
* * *
14803150 AAGGAAAATTGATACTTTTAATTTTTTCTCAAAAATATTTTTTTAGAAAGCTTATTTTCAT
1 AA--AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTAGAAAACTTATTTTCAT
* *
14803211 AAAAAATTGATACTTTCAATTTTTTTTCAAAAATATTTTTTT
1 AAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTT
14803253 TGAATTTTAT
Statistics
Matches: 132, Mismatches: 19, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
56 1 0.01
57 25 0.19
58 48 0.36
59 55 0.42
61 3 0.02
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (59 bp):
AAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTTAGAAAACTTATTTTCAT
Found at i:14803308 original size:6 final size:5
Alignment explanation
Indices: 14803279--14803355 Score: 109
Period size: 5 Copynumber: 14.4 Consensus size: 5
14803269 AAAGTAAAAT
14803279 AATAA AATAA AATAA AATAA AATAAA AATAAA AATAAA AATAAA AATAAA
1 AATAA AATAA AATAA AATAA AAT-AA AAT-AA AAT-AA AAT-AA AAT-AA
14803329 AATAA AATAA AATAA AATAA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA AA
14803356 AATATTAAAC
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
5 42 0.59
6 29 0.41
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AATAA
Found at i:14803396 original size:22 final size:22
Alignment explanation
Indices: 14803381--14803423 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
14803371 TAATCTAATT
14803381 AATAAATAATAATAATAAAAAC
1 AATAAATAATAATAATAAAAAC
*
14803403 AATAAATAATAA-AAAAAAAAC
1 AATAAATAATAATAATAAAAAC
14803424 CTAAGAACGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.19
Consensus pattern (22 bp):
AATAAATAATAATAATAAAAAC
Found at i:14803920 original size:11 final size:11
Alignment explanation
Indices: 14803906--14803962 Score: 62
Period size: 11 Copynumber: 5.0 Consensus size: 11
14803896 TCGAAATTTG
*
14803906 AAAAGTTTTC-
1 AAAAATTTTCA
14803916 AAAAATTTTCAAA
1 AAAAATTTTC--A
*
14803929 AAAAATTTGCA
1 AAAAATTTTCA
14803940 AAAAATTTTTCA
1 AAAAA-TTTTCA
14803952 AAAAATTTTCA
1 AAAAATTTTCA
14803963 CTAATTCCTA
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
10 9 0.22
11 12 0.30
12 10 0.25
13 9 0.22
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.35
Consensus pattern (11 bp):
AAAAATTTTCA
Found at i:14803934 original size:13 final size:13
Alignment explanation
Indices: 14803916--14803956 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
14803906 AAAAGTTTTC
14803916 AAAAATTTTCAAA
1 AAAAATTTTCAAA
*
14803929 AAAAATTTGC-AA
1 AAAAATTTTCAAA
*
14803941 AAAATTTTTCAAA
1 AAAAATTTTCAAA
14803954 AAA
1 AAA
14803957 TTTTCACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.29
Consensus pattern (13 bp):
AAAAATTTTCAAA
Found at i:14804229 original size:21 final size:21
Alignment explanation
Indices: 14804203--14804309 Score: 76
Period size: 21 Copynumber: 5.1 Consensus size: 21
14804193 ATCTCAACAA
*
14804203 AAAAAATATTAATAGATAATT
1 AAAAAATATTAATAGATAAAT
*
14804224 AAAAAA-AATAATCAGATAAAT
1 AAAAAATATTAAT-AGATAAAT
* * * *
14804245 -GAAAACATTAACAAATAAAT
1 AAAAAATATTAATAGATAAAT
*
14804265 -AAAAATAAATAATAGATAAATT
1 AAAAAAT-ATTAATAGATAAA-T
* * *
14804287 ATAATATATAAATAGATAAAT
1 AAAAAATATTAATAGATAAAT
14804308 AA
1 AA
14804310 TAATAAATAC
Statistics
Matches: 65, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
20 20 0.31
21 29 0.45
22 12 0.18
23 4 0.06
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (21 bp):
AAAAAATATTAATAGATAAAT
Found at i:14804266 original size:4 final size:4
Alignment explanation
Indices: 14804257--14804434 Score: 83
Period size: 4 Copynumber: 45.5 Consensus size: 4
14804247 AAACATTAAC
* * *
14804257 AAAT AAAT -AA- AAAT AAAT -AAT AGAT AAATT ATAAT ATAT AAAT AGAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA-T A-AAT AAAT AAAT AAAT
* * * ** *
14804304 AAAT -AAT -AAT AAAT ACAT ATAT ATAAT -AAT ATAT AAAT AGCT AAGT
1 AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT AAAT AAAT AAAT
* * *
14804350 -AAT -AAT AAAT ATAT -ATT AACAT AAA- AAAT AAAT AAAT ATAT ACTAAT
1 AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT A--AAT
*
14804397 AAAT AGTAAT -AAT AAAT AAAT AAAT -AAT AAAT ACAT AA
1 AAAT A--AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
14804435 GATATAAAGG
Statistics
Matches: 132, Mismatches: 24, Indels: 36
0.69 0.12 0.19
Matches are distributed among these distances:
3 31 0.23
4 84 0.64
5 9 0.07
6 8 0.06
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (4 bp):
AAAT
Found at i:14804303 original size:22 final size:22
Alignment explanation
Indices: 14804259--14804356 Score: 103
Period size: 22 Copynumber: 4.6 Consensus size: 22
14804249 ACATTAACAA
* *
14804259 ATAAATAAAAATAAAT-AATAG
1 ATAAATAATAATATATAAATAG
*
14804280 ATAAATTATAATATATAAATAG
1 ATAAATAATAATATATAAATAG
* *
14804302 ATAAATAATAATAAATACAT--
1 ATAAATAATAATATATAAATAG
*
14804322 ATATATAATAATATATAAATAG
1 ATAAATAATAATATATAAATAG
* *
14804344 CTAAGTAATAATA
1 ATAAATAATAATA
14804357 AATATATATT
Statistics
Matches: 62, Mismatches: 12, Indels: 5
0.78 0.15 0.06
Matches are distributed among these distances:
20 17 0.27
21 13 0.21
22 32 0.52
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (22 bp):
ATAAATAATAATATATAAATAG
Found at i:14804318 original size:7 final size:7
Alignment explanation
Indices: 14804258--14804494 Score: 88
Period size: 8 Copynumber: 33.1 Consensus size: 7
14804248 AACATTAACA
14804258 AATAAAT
1 AATAAAT
14804265 AA-AAAT
1 AATAAAT
14804271 AA-ATAAT
1 AATA-AAT
14804278 AGATAAAT
1 A-ATAAAT
*
14804286 TAT-AAT
1 AATAAAT
14804292 ATATAAAT
1 A-ATAAAT
14804300 AGATAAAT
1 A-ATAAAT
14804308 AAT-AAT
1 AATAAAT
*
14804314 AAATACAT
1 -AATAAAT
*
14804322 -ATATAT
1 AATAAAT
14804328 AAT-AAT
1 AATAAAT
14804334 ATATAAAT
1 A-ATAAAT
* *
14804342 AGCTAAGT
1 A-ATAAAT
14804350 AAT-AAT
1 AATAAAT
*
14804356 AAATATAT
1 -AATAAAT
*
14804364 ATTAACAT
1 AATAA-AT
*
14804372 AAAAAAT
1 AATAAAT
14804379 AAATAAAT
1 -AATAAAT
*
14804387 -ATATACT
1 AATA-AAT
14804394 AATAAAT
1 AATAAAT
*
14804401 AGT-AAT
1 AATAAAT
14804407 AATAAAT
1 AATAAAT
14804414 AAATAAAT
1 -AATAAAT
14804422 AATAAAT
1 AATAAAT
14804429 ACATAAGAT
1 A-ATAA-AT
*
14804438 -ATAAAGG
1 AATAAA-T
14804445 AA-AAA-
1 AATAAAT
*
14804450 AATATAAA
1 AATA-AAT
14804458 ATATAAAAT
1 A-AT-AAAT
14804467 AA-AAAT
1 AATAAAT
14804473 AA-AAAT
1 AATAAAT
14804479 AATAAAAT
1 AAT-AAAT
*
14804487 AAAAAAT
1 AATAAAT
14804494 A
1 A
14804495 CAAAATAAAA
Statistics
Matches: 177, Mismatches: 24, Indels: 58
0.68 0.09 0.22
Matches are distributed among these distances:
5 2 0.01
6 45 0.25
7 59 0.33
8 62 0.35
9 8 0.05
10 1 0.01
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (7 bp):
AATAAAT
Found at i:14804441 original size:15 final size:15
Alignment explanation
Indices: 14804257--14804503 Score: 113
Period size: 14 Copynumber: 17.2 Consensus size: 15
14804247 AAACATTAAC
14804257 AAATAAATAA-AAAT
1 AAATAAATAATAAAT
14804271 AAAT-AATAGATAAAT
1 AAATAAATA-ATAAAT
*
14804286 -TAT-AATATATAAAT
1 AAATAAATA-ATAAAT
*
14804300 AGATAAATAAT-AAT
1 AAATAAATAATAAAT
* *
14804314 AAATACAT-ATATAT
1 AAATAAATAATAAAT
14804328 -AAT-AATATATAAAT
1 AAATAAATA-ATAAAT
** *
14804342 AGCTAAGTAAT-AAT
1 AAATAAATAATAAAT
* *
14804356 AAATATATATTAACAT
1 AAATAAATAATAA-AT
14804372 AAA-AAATAAATAAAT
1 AAATAAAT-AATAAAT
* *
14804387 ATAT-ACTAATAAAT
1 AAATAAATAATAAAT
*
14804401 -AGT-AATAATAAAT
1 AAATAAATAATAAAT
14804414 AAATAAATAATAAAT
1 AAATAAATAATAAAT
* *
14804429 ACATAAGAT-ATAAAGG
1 AAATAA-ATAATAAA-T
*
14804445 AAAAAAAT-ATAAA-
1 AAATAAATAATAAAT
*
14804458 ATATAAAATAA-AAAT
1 AAAT-AAATAATAAAT
14804473 -AA-AAATAATAAAAT
1 AAATAAATAAT-AAAT
14804487 AAA-AAATACA-AAAT
1 AAATAAATA-ATAAAT
14804501 AAA
1 AAA
14804504 AAACAAAATG
Statistics
Matches: 178, Mismatches: 31, Indels: 48
0.69 0.12 0.19
Matches are distributed among these distances:
12 8 0.04
13 21 0.12
14 70 0.39
15 56 0.31
16 23 0.13
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.27
Consensus pattern (15 bp):
AAATAAATAATAAAT
Found at i:14804472 original size:20 final size:19
Alignment explanation
Indices: 14804447--14804511 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 19
14804437 TATAAAGGAA
14804447 AAAAATATAAAATATAAAAT
1 AAAAATA-AAAATATAAAAT
14804467 AAAAATAAAAATAATAAAAT
1 AAAAATAAAAAT-ATAAAAT
* *
14804487 AAAAAATACAAAATAAAAAAC
1 -AAAAATA-AAAATATAAAAT
14804508 AAAA
1 AAAA
14804512 TGGGCCTACC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
19 5 0.12
20 18 0.45
21 12 0.30
22 5 0.12
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (19 bp):
AAAAATAAAAATATAAAAT
Found at i:14804506 original size:7 final size:7
Alignment explanation
Indices: 14804370--14804511 Score: 74
Period size: 7 Copynumber: 19.9 Consensus size: 7
14804360 ATATATTAAC
14804370 ATAAAAA
1 ATAAAAA
14804377 ATAAATAA
1 ATAAA-AA
* *
14804385 ATATATA
1 ATAAAAA
* *
14804392 CTAATAA
1 ATAAAAA
*
14804399 ATAGTAATA
1 ATA--AAAA
14804408 ATAAATAA
1 ATAAA-AA
*
14804416 ATAAATA
1 ATAAAAA
*
14804423 ATAAATAC
1 ATAAA-AA
* *
14804431 ATAAGAT
1 ATAAAAA
**
14804438 ATAAAGG
1 ATAAAAA
14804445 A-AAAAA
1 ATAAAAA
*
14804451 ATATAAA
1 ATAAAAA
*
14804458 ATATAAA
1 ATAAAAA
14804465 AT-AAAA
1 ATAAAAA
14804471 AT-AAAA
1 ATAAAAA
14804477 ATAATAAA
1 ATAA-AAA
14804485 ATAAAAA
1 ATAAAAA
*
14804492 ATACAAA
1 ATAAAAA
14804499 ATAAAAA
1 ATAAAAA
*
14804506 ACAAAA
1 ATAAAA
14804512 TGGGCCTACC
Statistics
Matches: 102, Mismatches: 25, Indels: 16
0.71 0.17 0.11
Matches are distributed among these distances:
6 15 0.15
7 59 0.58
8 23 0.23
9 5 0.05
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.22
Consensus pattern (7 bp):
ATAAAAA
Found at i:14805826 original size:57 final size:57
Alignment explanation
Indices: 14805737--14806247 Score: 522
Period size: 57 Copynumber: 8.9 Consensus size: 57
14805727 TTTTTGTGCA
* *
14805737 AGAAAAATTGATACTTTCAACTTTTTCC-C-AAAATATTTTTTAAAAATTTTAATCTCG
1 AGAAAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTTGAAAA-TTTAATTTCG
* * **
14805794 AGAAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTGAAAATTTATTTTTA
1 AGAAAAATTGATACTTTCAACTTTTCCTCAAAAA-TATTTTTTGAAAATTTAATTTCG
* * * *
14805852 AGGAAAATTGATAATTTCAATTTTTTCTCAAAAATATTTTTT-AAAATCTTAATTTCG
1 AGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAAT-TTAATTTCG
* * *
14805909 AGGAAAATTGATACTTTTAACTTTTCCTCAAAAATATTTTTTTGGAAACTTTAATTTCG
1 AGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTT-GAAAATTTAATTTCG
** * **
14805968 AGGGAAATTGATACTTTCAAC-TTTCTCTCAAAAACT-TTTTTTGAAAATTTATTTTTA
1 AGAAAAATTGATACTTTCAACTTTTC-CTCAAAAA-TATTTTTTGAAAATTTAATTTCG
* *
14806025 AGAAAAATTGATACTTTCACCTTTTCCCCAAAAATATTTTTTGAAAATTTTAATTTCG
1 AGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAA-TTTAATTTCG
* **
14806083 AGAAAAATT-ATACTTTCAAC-TTTCCTTCAAAAACCT-TTTTTTGAAAATTTATTTTTA
1 AGAAAAATTGATACTTTCAACTTTTCC-TCAAAAA--TATTTTTTGAAAATTTAATTTCG
* * * * **
14806140 AGAAAAATTGATACTTTCAACTTTTCCTTACAAA-CTTTTTT-CAAATTT-ATTTTT
1 AGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTAATTTCG
* *
14806194 AAAGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTCTTTTTGAAAATTT
1 AGA-AAAATTGATACTTTCAACTTTTCCTCAAAAATA--T-TTTTTGAAAATTT
14806248 TTATTTTTTC
Statistics
Matches: 382, Mismatches: 48, Indels: 45
0.80 0.10 0.09
Matches are distributed among these distances:
54 6 0.02
55 34 0.09
56 23 0.06
57 146 0.38
58 104 0.27
59 58 0.15
60 11 0.03
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (57 bp):
AGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTAATTTCG
Found at i:14805941 original size:115 final size:113
Alignment explanation
Indices: 14805735--14806247 Score: 518
Period size: 115 Copynumber: 4.5 Consensus size: 113
14805725 TATTTTTGTG
* * * * *
14805735 CAAGAAAAATTGATACTTTCAACTTTTTC-CCAAAATATTTTTTAAAAATTTTAATCTCGAGAAA
1 CAAGGAAAATTGATACTTTCAA-TTTTTCTCAAAAATATTTTTTGAAAA-TTTAATTTCAAGAAA
*
14805799 AATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTGAAAATTTATTTT
64 AATTGATACTTTCAACTTTTCCTCAAAAA-TTTTTTTTGAAAATTTAATTT
* * * *
14805850 TAAGGAAAATTGATAATTTCAATTTTTTCTCAAAAATATTTTTT-AAAATCTTAATTTCGAGGAA
1 CAAGGAAAATTGATACTTTCAA-TTTTTCTCAAAAATATTTTTTGAAAAT-TTAATTTCAAGAAA
* *
14805914 AATTGATACTTTTAACTTTTCCTCAAAAATATTTTTTTGGAAACTTTAATTT
64 AATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTT-GAAAATTTAATTT
* * * * *
14805966 CGAGGGAAATTGATACTTTCAACTTTCTCTCAAAAACT-TTTTTTGAAAATTTATTTTTAAGAAA
1 CAAGGAAAATTGATACTTTCAA-TTTTTCTCAAAAA-TATTTTTTGAAAATTTAATTTCAAGAAA
* * *
14806030 AATTGATACTTTCACCTTTTCCCCAAAAATATTTTTTGAAAATTTTAATTT
64 AATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTGAAAA-TTTAATTT
* * * * * *
14806081 CGAGAAAAATT-ATACTTTCAACTTTCCTTCAAAAACCT-TTTTTTGAAAATTTATTTTTAAGAA
1 CAAGGAAAATTGATACTTTCAATTTTTC-TCAAAAA--TATTTTTTGAAAATTTAATTTCAAGAA
* * * * *
14806144 AAATTGATACTTTCAACTTTTCCTTACAAA-CTTTTTT-CAAATTTATTTT
63 AAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTGAAAATTTAATTT
* * *
14806193 TAAAGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTCTTTTTGAAAATTT
1 CAAGGAAAATTGATACTTTCAATTTTTC-TCAAAAATA--T-TTTTTGAAAATTT
14806248 TTATTTTTTC
Statistics
Matches: 342, Mismatches: 42, Indels: 28
0.83 0.10 0.07
Matches are distributed among these distances:
111 1 0.00
112 14 0.04
113 29 0.08
114 30 0.09
115 165 0.48
116 97 0.28
117 6 0.02
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (113 bp):
CAAGGAAAATTGATACTTTCAATTTTTCTCAAAAATATTTTTTGAAAATTTAATTTCAAGAAAAA
TTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTGAAAATTTAATTT
Found at i:14808109 original size:22 final size:22
Alignment explanation
Indices: 14808084--14808131 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
14808074 TATTTTTTTT
*
14808084 TTCTCTCCTATTCGGATTCTTC
1 TTCTCTCCTATTCGGATCCTTC
14808106 TTCTCTCCTATTCGGATCCTTC
1 TTCTCTCCTATTCGGATCCTTC
14808128 TTCT
1 TTCT
14808132 ATCTTTTCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.08, C:0.33, G:0.08, T:0.50
Consensus pattern (22 bp):
TTCTCTCCTATTCGGATCCTTC
Found at i:14808519 original size:13 final size:13
Alignment explanation
Indices: 14808501--14808527 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14808491 AATAAAAACA
14808501 TTAAAAAAATTAT
1 TTAAAAAAATTAT
14808514 TTAAAAAAATTAT
1 TTAAAAAAATTAT
14808527 T
1 T
14808528 ATTATTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TTAAAAAAATTAT
Found at i:14808607 original size:57 final size:56
Alignment explanation
Indices: 14808544--14809030 Score: 431
Period size: 56 Copynumber: 8.6 Consensus size: 56
14808534 TTTGTGTAGA
* *
14808544 AAAAATTGATACTTTTAACTTTTTCCTAAAATATTTTTTAAAAATTTTAATCTCGAG
1 AAAAATTGATACTTTCAACTTTTTCCTAAAATATTTTTTAAAAA-TTTAATTTCGAG
* * * * *
14808601 AAAAATTGATACTTTCAACTTTTT-TTCAAAATATCTTTTGAAACTTTAATTTCGAA
1 AAAAATTGATACTTTCAACTTTTTCCT-AAAATATTTTTTAAAAATTTAATTTCGAG
* * **
14808657 AAAAATTGATACTCTCAAC-TTTTCCTCAAAACT-TTTTTTGAAAATTT-ATTTTAAG
1 AAAAATTGATACTTTCAACTTTTTCCT-AAAA-TATTTTTTAAAAATTTAATTTCGAG
* * * * * *
14808712 GAGAATTGATACTCTCAACTTTTTCCCAAAAATATTTTTTAGAAATCTTAATTTCGAA
1 AAAAATTGATACTTTCAACTTTTT-CCTAAAATATTTTTTAAAAAT-TTAATTTCGAG
* * *
14808770 AAAAATTGATACTTTCAACTTTTT-CTCAAAT-TTTTTTGAAACTTTAATTTCGAG
1 AAAAATTGATACTTTCAACTTTTTCCTAAAATATTTTTTAAAAATTTAATTTCGAG
* * * * * ** *
14808824 AGAAATTGATACTTTCAACTTTCTCTCAAAAATTTTTTTTGAAAATTT-ATTTTTAA
1 AAAAATTGATACTTTCAACTTTTTC-CTAAAATATTTTTTAAAAATTTAATTTCGAG
* *
14808880 AGAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTTGAAAATTTTAATTTCGA-
1 A-AAAATTGATACTTTCAACTTTTTC-CTAAAATATTTTTT-AAAAATTTAATTTCGAG
* * * **
14808938 AGGAAATTGATACTTTCAAC-TTTTCCTCAAAA-ACTTTTTCAAAAATTTATTTTTAAG
1 A-AAAATTGATACTTTCAACTTTTTCCT-AAAATA-TTTTTTAAAAATTTAATTTCGAG
*
14808995 GAAAATTGATACTTT-AAC-TTTTCCTCAAAAATATTT
1 AAAAATTGATACTTTCAACTTTTTCCT--AAAATATTT
14809031 CTTTTTGAAA
Statistics
Matches: 355, Mismatches: 56, Indels: 39
0.79 0.12 0.09
Matches are distributed among these distances:
54 32 0.09
55 46 0.13
56 115 0.32
57 106 0.30
58 51 0.14
59 5 0.01
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (56 bp):
AAAAATTGATACTTTCAACTTTTTCCTAAAATATTTTTTAAAAATTTAATTTCGAG
Found at i:14808892 original size:169 final size:169
Alignment explanation
Indices: 14808545--14809044 Score: 636
Period size: 169 Copynumber: 2.9 Consensus size: 169
14808535 TTGTGTAGAA
* * * * *
14808545 AAAATTGATACTTTTAACTTTTT-CCTAAAATATTTTTTAAAAATTTTAATCTCGAGAAAAATTG
1 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTAGAAATTTTAATTTCGAAAAAAATTG
* * * * *
14808609 ATACTTTCAACTTTTTTTCAAAATATCTTTTGAAACTTTAATTTCGAAAAAAATTGATACTCTCA
66 ATACTTTCAACTTTTTCTCAAAAT-TTTTTTGAAACTTTAATTTCGAGAGAAATTGATACTTTCA
* *
14808674 ACTTTTCCTC-AAAACTTTTTTTGAAAATTTATTTTAAGG
130 ACTTTTCCTCAAAAATTTTTTTTGAAAATTTATTTTAAAG
* * *
14808713 AGAATTGATACTCTCAACTTTTTCCCAAAAATATTTTTTAGAAATCTTAATTTCGAAAAAAATTG
1 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTAGAAATTTTAATTTCGAAAAAAATTG
14808778 ATACTTTCAACTTTTTCTC-AAATTTTTTTGAAACTTTAATTTCGAGAGAAATTGATACTTTCAA
66 ATACTTTCAACTTTTTCTCAAAATTTTTTTGAAACTTTAATTTCGAGAGAAATTGATACTTTCAA
14808842 C-TTTCTCTCAAAAATTTTTTTTGAAAATTTATTTTTAAAG
131 CTTTTC-CTCAAAAATTTTTTTTGAAAATTTA-TTTTAAAG
* **
14808882 AAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTTT-GAAAATTTTAATTTCGAAGGAAATT
1 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTAG-AAATTTTAATTTCGAAAAAAATT
* * ** * * **
14808946 GATACTTTCAACTTTTCCTCAAAAACTTTTTCAAAAATTTATTTTTAAG-GAAAATTGATACTTT
65 GATACTTTCAACTTTTTCTC-AAAATTTTTTTGAAACTTTAATTTCGAGAG-AAATTGATACTTT
14809010 -AACTTTTCCTCAAAAATATTTCTTTTTGAAAATTT
128 CAACTTTTCCTC-AAAA-ATTT-TTTTTGAAAATTT
14809045 TTATTTTTTT
Statistics
Matches: 291, Mismatches: 29, Indels: 19
0.86 0.09 0.06
Matches are distributed among these distances:
166 4 0.01
167 41 0.14
168 45 0.15
169 136 0.47
170 7 0.02
171 41 0.14
172 4 0.01
173 13 0.04
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (169 bp):
AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTAGAAATTTTAATTTCGAAAAAAATTG
ATACTTTCAACTTTTTCTCAAAATTTTTTTGAAACTTTAATTTCGAGAGAAATTGATACTTTCAA
CTTTTCCTCAAAAATTTTTTTTGAAAATTTATTTTAAAG
Found at i:14809068 original size:6 final size:6
Alignment explanation
Indices: 14809059--14809089 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
14809049 TTTTTTTGCA
14809059 AAAAAT AAAAAT -AAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA
14809090 TACTCCTGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:14809076 original size:11 final size:11
Alignment explanation
Indices: 14809060--14809085 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14809050 TTTTTTGCAA
14809060 AAAATAAAAAT
1 AAAATAAAAAT
14809071 AAAATAAAAAT
1 AAAATAAAAAT
14809082 AAAA
1 AAAA
14809086 ATAATACTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:14810896 original size:22 final size:22
Alignment explanation
Indices: 14810871--14810916 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
14810861 TATTTTTTTT
*
14810871 TTCTCTCCTATTCGGATTCTTC
1 TTCTCTCCTATTCGGATCCTTC
14810893 TTCTCTCCTATTCGGATCCTTC
1 TTCTCTCCTATTCGGATCCTTC
14810915 TT
1 TT
14810917 TTATCTTTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.09, C:0.33, G:0.09, T:0.50
Consensus pattern (22 bp):
TTCTCTCCTATTCGGATCCTTC
Found at i:14812928 original size:58 final size:58
Alignment explanation
Indices: 14812801--14813041 Score: 373
Period size: 58 Copynumber: 4.1 Consensus size: 58
14812791 TTTTTTGTAG
*
14812801 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTCGATTT-TCAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTT--ATTTCT-AA
14812860 GGAAAATTGATACTTTCAACTTTTTCCC-AAAAATATTTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCTAAAAATATTTTTTTGGAAATTTATTTCTAA
14812918 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTA-TTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTATTTC-TAA
* *
14812976 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGGAAATTTATTTCTAA
14813035 GGAAAAT
1 GGAAAAT
14813042 CCCCAAAAAT
Statistics
Matches: 173, Mismatches: 2, Indels: 14
0.92 0.01 0.07
Matches are distributed among these distances:
57 10 0.06
58 87 0.50
59 52 0.30
60 24 0.14
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTATTTCTAA
Found at i:14813016 original size:117 final size:116
Alignment explanation
Indices: 14812801--14813041 Score: 389
Period size: 117 Copynumber: 2.1 Consensus size: 116
14812791 TTTTTTGTAG
14812801 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTCGATTTTCAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTC-ATTTTCAAGGAAAA
14812866 TTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGGAAATTTATTTCTAA
65 TTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGGAAATTTATTTCTAA
*
14812918 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTT-ATTCTT-AAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAATTTCATT-TTCAAGGAAA
* *
14812981 ATTGATACTTTCAAC-TTTTCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGA
64 ATTGATACTTTCAACTTTTTCCC-AAAAATA-TTTTTTTGGAAATTTATTTCTAA
14813035 GGAAAAT
1 GGAAAAT
14813042 CCCCAAAAAT
Statistics
Matches: 117, Mismatches: 3, Indels: 8
0.91 0.02 0.06
Matches are distributed among these distances:
115 7 0.06
116 32 0.27
117 64 0.55
118 14 0.12
ACGTcount: A:0.34, C:0.12, G:0.10, T:0.44
Consensus pattern (116 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTCATTTTCAAGGAAAAT
TGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGGAAATTTATTTCTAA
Found at i:14813067 original size:40 final size:41
Alignment explanation
Indices: 14812999--14813081 Score: 123
Period size: 40 Copynumber: 2.0 Consensus size: 41
14812989 TTTCAACTTT
* * *
14812999 TCCCTAAAAATATTTTTTTTTGAAATTTATTTCTGAGGAAAA
1 TCCCCAAAAATA-TTTTTTTGGAAATTTATTTCTAAGGAAAA
14813041 TCCCCAAAAATA-TTTTTTGGAAATTTATTTCTAAGGAAAA
1 TCCCCAAAAATATTTTTTTGGAAATTTATTTCTAAGGAAAA
14813081 T
1 T
14813082 TACTACTTTC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 27 0.71
42 11 0.29
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (41 bp):
TCCCCAAAAATATTTTTTTGGAAATTTATTTCTAAGGAAAA
Found at i:14813081 original size:99 final size:100
Alignment explanation
Indices: 14812941--14813125 Score: 304
Period size: 99 Copynumber: 1.9 Consensus size: 100
14812931 TTTCAACTTT
*
14812941 TCCCTAAAAATATTTTTTTGGAAATTTATTCTTAAGGAAAATTGA-TACTTTCAACTTTTCCCTA
1 TCCCCAAAAATATTTTTTTGGAAATTTATTCTTAAGGAAAATT-ACTACTTTCAACTTTTCCCTA
*
14813005 AAAATATTTTTTTTTGAAATTTATTTCTGAGGAAAA
65 AAAATATATTTTTTTGAAATTTATTTCTGAGGAAAA
14813041 TCCCCAAAAATA-TTTTTTGGAAATTTATT-TCTAAGGAAAATTACTACTTTCAACTTTTCCCTA
1 TCCCCAAAAATATTTTTTTGGAAATTTATTCT-TAAGGAAAATTACTACTTTCAACTTTTCCCTA
*
14813104 AAAATATATTTTTTTGGAATTT
65 AAAATATATTTTTTTGAAATTT
14813126 TTTATTTTTA
Statistics
Matches: 80, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
98 2 0.03
99 67 0.84
100 11 0.14
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (100 bp):
TCCCCAAAAATATTTTTTTGGAAATTTATTCTTAAGGAAAATTACTACTTTCAACTTTTCCCTAA
AAATATATTTTTTTGAAATTTATTTCTGAGGAAAA
Found at i:14813590 original size:20 final size:20
Alignment explanation
Indices: 14813565--14813602 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14813555 GAACATCGGT
*
14813565 GCCGGATTCTGGAAATTTTC
1 GCCGGAATCTGGAAATTTTC
14813585 GCCGGAATCTGGAAATTT
1 GCCGGAATCTGGAAATTT
14813603 CACCGGAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (20 bp):
GCCGGAATCTGGAAATTTTC
Found at i:14813608 original size:19 final size:20
Alignment explanation
Indices: 14813566--14813610 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
14813556 AACATCGGTG
* *
14813566 CCGGATTCTGGAAATTTTCG
1 CCGGAATCTGGAAATTTTCA
14813586 CCGGAATCTGGAAA-TTTCA
1 CCGGAATCTGGAAATTTTCA
14813605 CCGGAA
1 CCGGAA
14813611 GTTGGCCGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (20 bp):
CCGGAATCTGGAAATTTTCA
Found at i:14813731 original size:31 final size:32
Alignment explanation
Indices: 14813663--14813732 Score: 83
Period size: 31 Copynumber: 2.2 Consensus size: 32
14813653 ACTGGACTAG
* *
14813663 TCGCCGGAAACTTCAATGTTCACCGGAATTGT
1 TCGCCGGAAAATTCAATGTTCACCGAAATTGT
*
14813695 T-GCCGGAAAATTCAAAT-TTCGCCGAAATT-T
1 TCGCCGGAAAATTC-AATGTTCACCGAAATTGT
14813725 TCGCCGGA
1 TCGCCGGA
14813733 TTCTGGAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
30 2 0.06
31 27 0.82
32 4 0.12
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (32 bp):
TCGCCGGAAAATTCAATGTTCACCGAAATTGT
Found at i:14818608 original size:14 final size:15
Alignment explanation
Indices: 14818589--14818618 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14818579 TTTTATCTTA
14818589 TATTAA-ATATTTTT
1 TATTAACATATTTTT
14818603 TATTAACATATTTTT
1 TATTAACATATTTTT
14818618 T
1 T
14818619 TAATAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTAACATATTTTT
Found at i:14818666 original size:23 final size:23
Alignment explanation
Indices: 14818622--14818683 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 23
14818612 ATTTTTTTAA
14818622 TAAAATATATTAATTT-TAATTAATT
1 TAAAATA-A-TAATTTATAATT-ATT
14818647 TAAAATAATAATTTAT-ATTATT
1 TAAAATAATAATTTATAATTATT
14818669 TAATAA-AA-AATTTAT
1 TAA-AATAATAATTTAT
14818684 TTATTAAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
21 7 0.20
22 8 0.23
23 11 0.31
24 2 0.06
25 7 0.20
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (23 bp):
TAAAATAATAATTTATAATTATT
Found at i:14818673 original size:20 final size:19
Alignment explanation
Indices: 14818649--14818698 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
14818639 AATTAATTTA
14818649 AAATAATAATTTATATTATT
1 AAATAATAATTTAT-TTATT
* *
14818669 TAATAAAAAATTTATTTATT
1 AAAT-AATAATTTATTTATT
14818689 AAATATATAA
1 AAATA-ATAA
14818699 AAATATATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 14 0.58
21 9 0.38
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AAATAATAATTTATTTATT
Found at i:14823397 original size:12 final size:12
Alignment explanation
Indices: 14823380--14823413 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
14823370 AAAAAAAATT
*
14823380 TATATCGATTAG
1 TATATCAATTAG
14823392 TATATCAATTAG
1 TATATCAATTAG
*
14823404 TGTATCAATT
1 TATATCAATT
14823414 GAATATGAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (12 bp):
TATATCAATTAG
Found at i:14823983 original size:12 final size:12
Alignment explanation
Indices: 14823966--14823998 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
14823956 TCTATGTATT
14823966 TTCATGTGTGCA
1 TTCATGTGTGCA
14823978 TTCATGTGTGCA
1 TTCATGTGTGCA
*
14823990 TTTATGTGT
1 TTCATGTGT
14823999 TTGTCCATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.12, G:0.24, T:0.48
Consensus pattern (12 bp):
TTCATGTGTGCA
Found at i:14824017 original size:2 final size:2
Alignment explanation
Indices: 14824005--14824034 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
14823995 GTGTTTGTCC
*
14824005 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
14824035 CAATAACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:14830820 original size:14 final size:14
Alignment explanation
Indices: 14830803--14830836 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
14830793 CAATTTAATT
14830803 TTCTTTTATATTGA
1 TTCTTTTATATTGA
14830817 TTC-TTTATATTGA
1 TTCTTTTATATTGA
*
14830830 TTATTTT
1 TTCTTTT
14830837 TTGATTCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.21, C:0.06, G:0.06, T:0.68
Consensus pattern (14 bp):
TTCTTTTATATTGA
Found at i:14830825 original size:13 final size:13
Alignment explanation
Indices: 14830807--14830843 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
14830797 TTAATTTTCT
14830807 TTTATATTGATTC
1 TTTATATTGATTC
*
14830820 TTTATATTGATTA
1 TTTATATTGATTC
14830833 TTT-T-TTGATTC
1 TTTATATTGATTC
14830844 AATGATTCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
11 6 0.27
12 1 0.05
13 15 0.68
ACGTcount: A:0.22, C:0.05, G:0.08, T:0.65
Consensus pattern (13 bp):
TTTATATTGATTC
Found at i:14840741 original size:13 final size:13
Alignment explanation
Indices: 14840723--14840756 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
14840713 ATTTTTCTTT
*
14840723 AAAAAAAAA-AGC
1 AAAAAAAAACAAC
14840735 AAAAAAAAACAAC
1 AAAAAAAAACAAC
14840748 AAAAAAAAA
1 AAAAAAAAA
14840757 TAAAAAATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (13 bp):
AAAAAAAAACAAC
Found at i:14841896 original size:73 final size:73
Alignment explanation
Indices: 14841798--14842575 Score: 711
Period size: 73 Copynumber: 10.8 Consensus size: 73
14841788 ATATAGTTCC
* * * * * **
14841798 CTGACTTACGGTTCAGTCTCAGTCATCTTTAATCTTTAACTCGCAGTTTAATCCTGATCATTTCA
1 CTGACTTGCGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCTGATCATTTCA
14841863 TTATTTCT
66 TTATTTCT
* * * *
14841871 CTGACTTGTGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTAGTTTAATCCCGGTCATTTC-
1 CTGACTTGCGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCTGATCATTTCA
14841935 --A-TTCT
66 TTATTTCT
* * * *
14841940 CTGACTTGCGGTTCAATCCCAGTCATCTTTAATCTTTGACTAGTGGTTTAATCCCGGTCATTTCA
1 CTGACTTGCGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCTGATCATTTCA
14842005 TTAATTT-T
66 TT-ATTTCT
* * * * * * * * *
14842013 TTTACTTACGATTTAGTCCCAGTCATCTTTAATCTTTAACTCGCGATTTAATCCCGATCATTTCA
1 CTGACTTGCGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCTGATCATTTCA
*
14842078 TTAATTCT
66 TTATTTCT
* * * * * ** *
14842086 CTGACTTGTGGTTCATTCCCAATCGTCTTTAATCTTTGACTTATGGTTTAAT-CTCGGTCATTTC
1 CTGACTTGCGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCT-GATCATTTC
14842150 ---A-TTCT
65 ATTATTTCT
* * *
14842155 CTGACTTGCGGTTCAATCCCAGTCATCTTTAATCTTTGACTCGTGATTTAATCC-CAGTCATTTC
1 CTGACTTGCGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCTGA-TCATTTC
14842219 ATTAATTT-T
65 ATT-ATTTCT
* * * * * * * *
14842228 TTGACTTACGATTTAGTCCTAGTCATCTTTAATCTTTGGCTCGCGGTTTAAT-CTCGGTCATTTC
1 CTGACTTGCGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCT-GATCATTTC
14842292 ATTATTTCT
65 ATTATTTCT
* * * * * * *
14842301 ATGACTTACGATTTAGTCCCAGTCATTTTTAATCTTTGACTCGTGGTTTAATCCCGGTCATTTC-
1 CTGACTTGCGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCTGATCATTTCA
14842365 --A-TTCT
66 TTATTTCT
* * * *
14842370 CTGACTTGCGACTCAATCTCAGTCATCTTTAATTTTTGACTCGTGATTTAAT-CTCGATCATTTC
1 CTGACTTGCGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCT-GATCATTTC
14842434 ATTAATTTCT
65 ATT-ATTTCT
* *
14842444 -TGACTTGCGATTTAATCTCAGTCATCTTTAATCTTT-AGCTCGTGGTTTAAT-CTCGATCATTT
1 CTGACTTGCGATTCAATCCCAGTCATCTTTAATCTTTGA-CTCGTGGTTTAATCCT-GATCATTT
14842506 CATTAATTTC-
64 CATT-ATTTCT
* * * * * * *
14842516 CTCGACTTAC-AGTTCAGTCACAGTCATCGTTAATATTTGATTCGTGGTTTAATCCCGATC
1 CT-GACTTGCGA-TTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCTGATC
14842576 TTCTTATTAT
Statistics
Matches: 585, Mismatches: 90, Indels: 59
0.80 0.12 0.08
Matches are distributed among these distances:
68 1 0.00
69 175 0.30
70 4 0.01
72 10 0.02
73 341 0.58
74 52 0.09
75 2 0.00
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (73 bp):
CTGACTTGCGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCTGATCATTTCA
TTATTTCT
Found at i:14842055 original size:142 final size:141
Alignment explanation
Indices: 14841798--14842572 Score: 784
Period size: 142 Copynumber: 5.4 Consensus size: 141
14841788 ATATAGTTCC
* * ** * *
14841798 CTGACTTACGGTTCAGTCTCAGTCATCTTTAATCTTTAACTCGCAGTTTAATCCTGATCATTTCA
1 CTGACTTACGGTTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGGTCATTTCA
* * *
14841863 TTATTTCTCTGACTTGTGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTAGTTTAATCCCGG
66 TTATTT-TCTGACTTGCGATTTAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGG
14841928 TCATTTCATTCT
130 TCATTTCATTCT
* * *
14841940 CTGACTTGCGGTTCAATCCCAGTCATCTTTAATCTTTGACTAGTGGTTTAATCCCGGTCATTTCA
1 CTGACTTACGGTTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGGTCATTTCA
* * * * * * * *
14842005 TTAATTTTTTTACTTACGATTTAGTCCCAGTCATCTTTAATCTTTAACTCGCGATTTAATCCCGA
66 TT-ATTTTCTGACTTGCGATTTAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGG
14842070 TCATTTCATTAATTCT
130 TCATTTC----ATTCT
** * * * ** *
14842086 CTGACTTGTGGTTCATTCCCAATCGTCTTTAATCTTTGACTTATGGTTTAATCTCGGTCATTTC-
1 CTGACTTACGGTTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGGTCATTTCA
* * * * *
14842150 --ATTCTCTGACTTGCGGTTCAATCCCAGTCATCTTTAATCTTTGACTCGTGATTTAATCCCAGT
66 TTATTTTCTGACTTGCGATTTAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGGT
*
14842213 CATTTCATTAATTTT
131 CATTTC----ATTCT
* * * * * * *
14842228 TTGACTTACGATTTAGTCCTAGTCATCTTTAATCTTTGGCTCGCGGTTTAATCTCGGTCATTTCA
1 CTGACTTACGGTTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGGTCATTTCA
* * * *
14842293 TTATTTCTATGACTTACGATTTAGTCCCAGTCATTTTTAATCTTTGACTCGTGGTTTAATCCCGG
66 TTATTT-TCTGACTTGCGATTTAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGG
14842358 TCATTTCATTCT
130 TCATTTCATTCT
* ** * * * * * *
14842370 CTGACTTGCGACTCAATCTCAGTCATCTTTAATTTTTGACTCGTGATTTAATCTCGATCATTTCA
1 CTGACTTACGGTTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGGTCATTTCA
* * *
14842435 TTAATTTCTTGACTTGCGATTTAATCTCAGTCATCTTTAATCTTT-AGCTCGTGGTTTAATCTCG
66 TTATTTTC-TGACTTGCGATTTAATCCCAGTCATCTTTAATCTTTGA-CTCGTGGTTTAATCCCG
* *
14842499 ATCATTTCATTAATTT
129 GTCATTTCA-T--TCT
* * * * *
14842515 CCTCGACTTACAGTTCAGTCACAGTCATCGTTAATATTTGATTCGTGGTTTAATCCCG
1 -CT-GACTTACGGTTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCG
14842573 ATCTTCTTAT
Statistics
Matches: 523, Mismatches: 94, Indels: 27
0.81 0.15 0.04
Matches are distributed among these distances:
141 2 0.00
142 347 0.66
143 5 0.01
145 5 0.01
146 121 0.23
147 43 0.08
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (141 bp):
CTGACTTACGGTTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGGTCATTTCA
TTATTTTCTGACTTGCGATTTAATCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGGT
CATTTCATTCT
Found at i:14842493 original size:35 final size:35
Alignment explanation
Indices: 14841872--14842497 Score: 196
Period size: 35 Copynumber: 17.5 Consensus size: 35
14841862 ATTATTTCTC
* * * *
14841872 TGACTTGTGATTCAATCCCAGTCATCTTTAATCTT
1 TGACTCGTGATTTAATCTCAGTCATCTTTAATTTT
* * * *
14841907 TGACTCGT-AGTTTAATCCCGGTCA--TTTCATTCTC
1 TGACTCGTGA-TTTAATCTCAGTCATCTTTAATT-TT
* * * * * *
14841941 TGACTTGCGGTTCAATCCCAGTCATCTTTAATCTT
1 TGACTCGTGATTTAATCTCAGTCATCTTTAATTTT
* * * * *
14841976 TGACTAGTGGTTTAATCCCGGTCATTTCATTAATTTTT
1 TGACTCGTGATTTAATCTCAGTCA--TCTTTAA-TTTT
* *** * * *
14842014 TTACTTACGATTTAGTCCCAGTCATCTTTAATCTT
1 TGACTCGTGATTTAATCTCAGTCATCTTTAATTTT
* * * * *
14842049 TAACTCGCGATTTAATC-CCGATCATTTCATTAATTCTC
1 TGACTCGTGATTTAATCTCAG-TCA--TCTTTAATT-TT
* * * * * * * *
14842087 TGACTTGTGGTTCATTCCCAATCGTCTTTAATCTT
1 TGACTCGTGATTTAATCTCAGTCATCTTTAATTTT
** * * * *
14842122 TGACTTATGGTTTAATCTCGGTCA--TTTCATTCTC
1 TGACTCGTGATTTAATCTCAGTCATCTTTAATT-TT
* * * * * *
14842156 TGACTTGCGGTTCAATCCCAGTCATCTTTAATCTT
1 TGACTCGTGATTTAATCTCAGTCATCTTTAATTTT
* *
14842191 TGACTCGTGATTTAATCCCAGTCATTTCATTAATTTTT
1 TGACTCGTGATTTAATCTCAGTCA--TCTTTAA-TTTT
*** * *
14842229 TGACTTACGATTTAGTC-CTAGTCATCTTTAATCTT
1 TGACTCGTGATTTAATCTC-AGTCATCTTTAATTTT
* * * * *
14842264 TGGCTCGCGGTTTAATCTCGGTCAT-TTCATTATTTCT
1 TGACTCGTGATTTAATCTCAGTCATCTT--TAATTT-T
*** * * * *
14842301 ATGACTTACGATTTAGTCCCAGTCATTTTTAATCTT
1 -TGACTCGTGATTTAATCTCAGTCATCTTTAATTTT
* * * * *
14842337 TGACTCGTGGTTTAATCCCGGTCA--TTTCATTCTC
1 TGACTCGTGATTTAATCTCAGTCATCTTTAATT-TT
* * * *
14842371 TGACTTGCGACTCAATCTCAGTCATCTTTAATTTT
1 TGACTCGTGATTTAATCTCAGTCATCTTTAATTTT
*
14842406 TGACTCGTGATTTAATCTC-GATCATTTCATTAATTTCT
1 TGACTCGTGATTTAATCTCAG-TCA--TCTTTAATTT-T
* * *
14842444 TGACTTGCGATTTAATCTCAGTCATCTTTAATCTT
1 TGACTCGTGATTTAATCTCAGTCATCTTTAATTTT
*
14842479 T-AGCTCGTGGTTTAATCTC
1 TGA-CTCGTGATTTAATCTC
14842498 GATCATTTCA
Statistics
Matches: 430, Mismatches: 126, Indels: 70
0.69 0.20 0.11
Matches are distributed among these distances:
33 15 0.03
34 64 0.15
35 170 0.40
36 49 0.11
37 34 0.08
38 94 0.22
39 4 0.01
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (35 bp):
TGACTCGTGATTTAATCTCAGTCATCTTTAATTTT
Found at i:14842619 original size:215 final size:214
Alignment explanation
Indices: 14841799--14842572 Score: 1052
Period size: 215 Copynumber: 3.6 Consensus size: 214
14841789 TATAGTTCCC
* * *
14841799 TGACTTACGGTTCAGTCTCAGTCATCTTTAATCTTTAACTCGCAGTTTAATC-CTGATCATTTCA
1 TGACTTACGATTTAGTCTCAGTCATCTTTAATCTTTAACTCGCGGTTTAATCTC-GATCATTTCA
** * *
14841863 TTATTTCTCTGACTTGTGATTCAATCCCAGTCATCTTTAATCTTTGACTCGTAGTTTAATCCCGG
65 TTATTTCTCTGACTTACGATTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGG
* *
14841928 TCATTTCATTCTCTGACTTGCGGTTCAATCCCAGTCATCTTTAATCTTTGACTAGTGGTTTAATC
130 TCATTTCATTCTCTGACTTGCGGTTCAATCCCAGTCATCTTTAATCTTTGACTCGTGATTTAAT-
*
14841993 CCGGTCATTTCATTAATTTTT
194 CCGATCATTTCATTAATTTTT
* * * *
14842014 TTACTTACGATTTAGTCCCAGTCATCTTTAATCTTTAACTCGCGATTTAATCCCGATCATTTCAT
1 TGACTTACGATTTAGTCTCAGTCATCTTTAATCTTTAACTCGCGGTTTAATCTCGATCATTTCAT
* ** * * * * ** *
14842079 TAATTCTCTGACTTGTGGTTCATTCCCAATCGTCTTTAATCTTTGACTTATGGTTTAATCTCGGT
66 TATTTCTCTGACTTACGATTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGGT
14842144 CATTTCATTCTCTGACTTGCGGTTCAATCCCAGTCATCTTTAATCTTTGACTCGTGATTTAATCC
131 CATTTCATTCTCTGACTTGCGGTTCAATCCCAGTCATCTTTAATCTTTGACTCGTGATTTAATCC
*
14842209 CAGTCATTTCATTAATTTTT
196 GA-TCATTTCATTAATTTTT
** *
14842229 TGACTTACGATTTAGTC-CTAGTCATCTTTAATCTTTGGCTCGCGGTTTAATCTCGGTCATTTCA
1 TGACTTACGATTTAGTCTC-AGTCATCTTTAATCTTTAACTCGCGGTTTAATCTCGATCATTTCA
* * *
14842293 TTATTTCTATGACTTACGATTTAGTCCCAGTCATTTTTAATCTTTGACTCGTGGTTTAATCCCGG
65 TTATTTCTCTGACTTACGATTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGG
** * *
14842358 TCATTTCATTCTCTGACTTGCGACTCAATCTCAGTCATCTTTAATTTTTGACTCGTGATTTAATC
130 TCATTTCATTCTCTGACTTGCGGTTCAATCCCAGTCATCTTTAATCTTTGACTCGTGATTTAATC
*
14842423 TCGATCATTTCATTAATTTCT
195 -CGATCATTTCATTAATTTTT
* * * *
14842444 TGACTTGCGATTTAATCTCAGTCATCTTTAATCTTTAGCTCGTGGTTTAATCTCGATCATTTCAT
1 TGACTTACGATTTAGTCTCAGTCATCTTTAATCTTTAACTCGCGGTTTAATCTCGATCATTTCAT
* * * *
14842509 TAATTTC-CTCGACTTAC-AGTTCAGTCACAGTCATCGTTAATATTTGATTCGTGGTTTAATCCC
66 T-ATTTCTCT-GACTTACGA-TTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCC
14842572 G
128 G
14842573 ATCTTCTTAT
Statistics
Matches: 495, Mismatches: 56, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
214 3 0.01
215 437 0.88
216 55 0.11
ACGTcount: A:0.21, C:0.22, G:0.13, T:0.44
Consensus pattern (214 bp):
TGACTTACGATTTAGTCTCAGTCATCTTTAATCTTTAACTCGCGGTTTAATCTCGATCATTTCAT
TATTTCTCTGACTTACGATTCAGTCCCAGTCATCTTTAATCTTTGACTCGTGGTTTAATCCCGGT
CATTTCATTCTCTGACTTGCGGTTCAATCCCAGTCATCTTTAATCTTTGACTCGTGATTTAATCC
GATCATTTCATTAATTTTT
Found at i:14844150 original size:22 final size:23
Alignment explanation
Indices: 14844125--14844167 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
14844115 ATATTTATGC
*
14844125 ATAAATGTTTAAAT-TTATTAGG
1 ATAAATATTTAAATATTATTAGG
*
14844147 ATAAATATTTAATTATTATTA
1 ATAAATATTTAAATATTATTA
14844168 ATAATAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (23 bp):
ATAAATATTTAAATATTATTAGG
Found at i:14846177 original size:63 final size:59
Alignment explanation
Indices: 14846045--14846245 Score: 254
Period size: 63 Copynumber: 3.4 Consensus size: 59
14846035 TTTTGTAGGA
14846045 AAAATTGATACTTTCAACTTTTTCC-CAAAAA---TATTTTTTTGAAAATTTATTTCTAAGG
1 AAAATTGATACTTTCAAC-TTTTCCTCAAAAACCCT-TTTTTTTG-AAATTTATTTCTAAGG
*
14846103 AAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTTTGAAACTTTGATTTCCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAACCC--TTTTTTTTGAAA-TTT-ATTTCTAAGG
* * *
14846166 AAAATTGATACTTTCAACTTTTCCTCAACAACCC---TTTTTGAAATTTATTTTTAAAG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTGAAATTTATTTCTAAGG
14846222 AAAATTGATACTTTCAACTTTTCC
1 AAAATTGATACTTTCAACTTTTCC
14846246 CTAAAAATAT
Statistics
Matches: 130, Mismatches: 5, Indels: 18
0.85 0.03 0.12
Matches are distributed among these distances:
56 31 0.24
57 9 0.07
58 33 0.25
61 3 0.02
62 11 0.08
63 43 0.33
ACGTcount: A:0.33, C:0.17, G:0.06, T:0.43
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTGAAATTTATTTCTAAGG
Found at i:14846260 original size:119 final size:121
Alignment explanation
Indices: 14846045--14846263 Score: 313
Period size: 119 Copynumber: 1.8 Consensus size: 121
14846035 TTTTGTAGGA
** *
14846045 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTTGAAAATTTATTTCTAAGGAAAATTG
1 AAAATTGATACTTTCAACTTTTTCCCAAAAATACCTTTTTGAAAATTTATTTCTAAAGAAAATTG
*
14846110 ATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTTTTGAAACTTTGATTTCCAAGG
66 ATACTTTCAACTTTTCCTCAAAAACACTTTTTTTTTTGAAACTTTGATTTCCAAGG
* * *
14846166 AAAATTGATACTTTCAAC-TTTTCCTCAACAA-CCCTTTTTG-AAATTTATTTTTAAAGAAAATT
1 AAAATTGATACTTTCAACTTTTTCC-CAAAAATACCTTTTTGAAAATTTATTTCTAAAGAAAATT
*
14846228 GATACTTTCAACTTTTCC-CTAAAAATA-TTTTTTTTT
65 GATACTTTCAACTTTTCCTC-AAAAACACTTTTTTTTT
14846264 GGAATTTTTC
Statistics
Matches: 88, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
118 10 0.11
119 43 0.49
120 12 0.14
121 23 0.26
ACGTcount: A:0.33, C:0.16, G:0.06, T:0.45
Consensus pattern (121 bp):
AAAATTGATACTTTCAACTTTTTCCCAAAAATACCTTTTTGAAAATTTATTTCTAAAGAAAATTG
ATACTTTCAACTTTTCCTCAAAAACACTTTTTTTTTTGAAACTTTGATTTCCAAGG
Found at i:14846320 original size:6 final size:6
Alignment explanation
Indices: 14846288--14846372 Score: 50
Period size: 6 Copynumber: 13.7 Consensus size: 6
14846278 TTATTTAAAG
* *
14846288 AAAATA GAATAATA AAAAGA TAAATA AAAATA AAAATA AATAA-A GAAAAGT-
1 AAAATA -AA-AATA AAAATA AAAATA AAAATA AAAATA AA-AATA -AAAA-TA
* * *
14846339 AAAACA GAAATA AAAA-A TAAAATA AAGATA AAAA
1 AAAATA AAAATA AAAATA -AAAATA AAAATA AAAA
14846373 GAATATTAGA
Statistics
Matches: 60, Mismatches: 10, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
5 1 0.02
6 46 0.77
7 9 0.15
8 4 0.07
ACGTcount: A:0.76, C:0.01, G:0.07, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:14846328 original size:16 final size:15
Alignment explanation
Indices: 14846288--14846336 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
14846278 TTATTTAAAG
*
14846288 AAAATAGAATAATAAA
1 AAAATA-AATAAAAAA
*
14846304 AAGATAAATAAAAATA
1 AAAATAAATAAAAA-A
14846320 AAAATAAATAAAGAAA
1 AAAATAAATAAA-AAA
14846336 A
1 A
14846337 GTAAAACAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 7 0.25
16 19 0.68
17 2 0.07
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (15 bp):
AAAATAAATAAAAAA
Found at i:14846330 original size:20 final size:21
Alignment explanation
Indices: 14846307--14846352 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
14846297 TAATAAAAAG
* *
14846307 ATAAATAAAAATAAAA-ATAA
1 ATAAAGAAAAATAAAACAGAA
*
14846327 ATAAAGAAAAGTAAAACAGAA
1 ATAAAGAAAAATAAAACAGAA
14846348 ATAAA
1 ATAAA
14846353 AAATAAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.76, C:0.02, G:0.07, T:0.15
Consensus pattern (21 bp):
ATAAAGAAAAATAAAACAGAA
Found at i:14846763 original size:19 final size:20
Alignment explanation
Indices: 14846727--14846765 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
14846717 GGTGCCAGAT
*
14846727 TCTGGAAAATATCGTCGGAA
1 TCTGGAAAATATCATCGGAA
*
14846747 TCTGG-AAATTTCATCGGAA
1 TCTGGAAAATATCATCGGAA
14846766 GTTGGCCGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.28
Consensus pattern (20 bp):
TCTGGAAAATATCATCGGAA
Found at i:14846812 original size:20 final size:19
Alignment explanation
Indices: 14846789--14846829 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
14846779 TCGTCGGTTT
*
14846789 CTGGGATTCTTCGTCGAAAA
1 CTGGG-TTCGTCGTCGAAAA
*
14846809 CTGGGTTGGTCGTCGAAAA
1 CTGGGTTCGTCGTCGAAAA
14846828 CT
1 CT
14846830 TCAATGTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (19 bp):
CTGGGTTCGTCGTCGAAAA
Found at i:14847335 original size:3 final size:3
Alignment explanation
Indices: 14847322--14847420 Score: 64
Period size: 3 Copynumber: 32.3 Consensus size: 3
14847312 AAAATATATT
*
14847322 ATA AAA ATA ATA ATA ATA ATA AT- ATA ATA ATA ATA CATA TATA ACTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -ATA A-TA
* * *
14847369 TATAA ATA A-A TTA CAT- ATAA ATA TTA ACA A-A A-A ATA ATA ATA ATA
1 -AT-A ATA ATA ATA -ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA
14847414 ATA ATA A
1 ATA ATA A
14847421 ATAACTAAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 20
0.74 0.08 0.19
Matches are distributed among these distances:
2 9 0.12
3 53 0.68
4 14 0.18
5 2 0.03
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:14847431 original size:8 final size:7
Alignment explanation
Indices: 14847322--14847432 Score: 60
Period size: 6 Copynumber: 16.1 Consensus size: 7
14847312 AAAATATATT
14847322 ATAAA-A
1 ATAAATA
14847328 AT-AATA
1 ATAAATA
14847334 AT-AATA
1 ATAAATA
14847340 ATAATATA
1 ATAA-ATA
14847348 AT-AATA
1 ATAAATA
*
14847354 ATACATA
1 ATAAATA
*
14847361 TATAACTA
1 -ATAAATA
14847369 TATAAATAA
1 -ATAAAT-A
*
14847378 ATTACAT-
1 A-TAAATA
14847385 ATAAATA
1 ATAAATA
*
14847392 TTAACA-A
1 ATAA-ATA
14847399 A-AAATA
1 ATAAATA
14847405 AT-AATA
1 ATAAATA
14847411 AT-AATA
1 ATAAATA
14847417 ATAAATA
1 ATAAATA
14847424 ACTAAATA
1 A-TAAATA
14847432 A
1 A
14847433 ATCAATATAT
Statistics
Matches: 84, Mismatches: 8, Indels: 24
0.72 0.07 0.21
Matches are distributed among these distances:
5 3 0.04
6 36 0.43
7 15 0.18
8 25 0.30
9 5 0.06
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.31
Consensus pattern (7 bp):
ATAAATA
Found at i:14847584 original size:20 final size:21
Alignment explanation
Indices: 14847559--14847597 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14847549 TTACCCCCTT
14847559 TGGGCCAGG-CCCAATTGGTC
1 TGGGCCAGGACCCAATTGGTC
*
14847579 TGGGCCTGGACCCAATTGG
1 TGGGCCAGGACCCAATTGG
14847598 GTGTCTACAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.15, C:0.28, G:0.36, T:0.21
Consensus pattern (21 bp):
TGGGCCAGGACCCAATTGGTC
Found at i:14847857 original size:40 final size:40
Alignment explanation
Indices: 14847766--14847982 Score: 330
Period size: 40 Copynumber: 5.3 Consensus size: 40
14847756 ACTTTGGAAC
*
14847766 TAAATTGCTCCTCTAAATAGAGGCAACGAACTTTGAAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTG-AAAAG
14847807 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
*
14847847 TAAATTGCTCCTCTAAACAGAGGTACCACG-ACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGG--CAACGAACTTT-GAAAAG
14847889 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
14847929 TAAATTGCTCCTCTAAACAGAGGCACCACG-ACTTTGGAAAAG
1 TAAATTGCTCCTCTAAACAGAGGCA--ACGAACTTT-GAAAAG
*
14847971 TAAATTACTCCT
1 TAAATTGCTCCT
14847983 TGACAATCAT
Statistics
Matches: 165, Mismatches: 4, Indels: 13
0.91 0.02 0.07
Matches are distributed among these distances:
40 63 0.38
41 49 0.30
42 53 0.32
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (40 bp):
TAAATTGCTCCTCTAAACAGAGGCAACGAACTTTGAAAAG
Found at i:14847906 original size:82 final size:81
Alignment explanation
Indices: 14847766--14847982 Score: 364
Period size: 82 Copynumber: 2.7 Consensus size: 81
14847756 ACTTTGGAAC
* * *
14847766 TAAATTGCTCCTCTAAATAGAGG-CAACGAACTTTGAAAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGGACCACG-ACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGG
14847830 CAACGAACTTTGAAAAG
65 CAACGAACTTTGAAAAG
14847847 TAAATTGCTCCTCTAAACAGAGGTACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGG
1 TAAATTGCTCCTCTAAACAGAGG-ACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGG
14847912 CAACGAACTTTGAAAAG
65 CAACGAACTTTGAAAAG
*
14847929 TAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTACTCCT
1 TAAATTGCTCCTCTAAACAGAGG-ACCACGACTTTGGAAAAGTAAATTGCTCCT
14847983 TGACAATCAT
Statistics
Matches: 129, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
81 22 0.17
82 103 0.80
83 4 0.03
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (81 bp):
TAAATTGCTCCTCTAAACAGAGGACCACGACTTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGC
AACGAACTTTGAAAAG
Found at i:14849946 original size:14 final size:14
Alignment explanation
Indices: 14849927--14849954 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14849917 AAAACATGCC
14849927 TTTCATGTTAAAGA
1 TTTCATGTTAAAGA
14849941 TTTCATGTTAAAGA
1 TTTCATGTTAAAGA
14849955 CAAAGTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
TTTCATGTTAAAGA
Found at i:14850528 original size:21 final size:22
Alignment explanation
Indices: 14850496--14850537 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
14850486 AACAATGATG
14850496 TAAGTATATT-AATTTTATTAT
1 TAAGTATATTAAATTTTATTAT
14850517 TAAGT-TATTTAAATTTTATTA
1 TAAGTATA-TTAAATTTTATTA
14850538 AGTCATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 2 0.11
21 7 0.37
22 10 0.53
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
TAAGTATATTAAATTTTATTAT
Found at i:14851090 original size:19 final size:19
Alignment explanation
Indices: 14851066--14851105 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
14851056 GTAAATTCCT
14851066 AATATAACAACTGTTAAAG
1 AATATAACAACTGTTAAAG
*
14851085 AATATAACAACTGTTGAAG
1 AATATAACAACTGTTAAAG
14851104 AA
1 AA
14851106 CAAACCTGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.53, C:0.10, G:0.12, T:0.25
Consensus pattern (19 bp):
AATATAACAACTGTTAAAG
Found at i:14852344 original size:15 final size:15
Alignment explanation
Indices: 14852326--14852362 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
14852316 TAATTAACAC
*
14852326 AAACTTAATAAAATA
1 AAACTAAATAAAATA
14852341 AAACTAAATAAAATA
1 AAACTAAATAAAATA
14852356 AAA-TAAA
1 AAACTAAA
14852363 CAAATTGATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (15 bp):
AAACTAAATAAAATA
Found at i:14853166 original size:15 final size:14
Alignment explanation
Indices: 14853135--14853174 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
14853125 CATAAGGATA
*
14853135 TTTAATTAATTAAT
1 TTTAATTAATAAAT
14853149 TTTAATTAAGTAAAT
1 TTTAATTAA-TAAAT
*
14853164 TTTGATTAATA
1 TTTAATTAATA
14853175 TATAAATAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (14 bp):
TTTAATTAATAAAT
Found at i:14853539 original size:2 final size:2
Alignment explanation
Indices: 14853532--14853568 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
14853522 CAGTAGAGTC
14853532 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14853569 AAAGCATATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:14854052 original size:15 final size:14
Alignment explanation
Indices: 14854010--14854058 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
14854000 TATTAGAATC
*
14854010 AAATTATAATTATT
1 AAATTATAATTAAT
*
14854024 AAATAATTAATTAAT
1 AAATTA-TAATTAAT
14854039 AAATTATAACTTAACT
1 AAATTATAA-TTAA-T
14854055 AAAT
1 AAAT
14854059 AACTAAATCC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 8 0.28
15 16 0.55
16 5 0.17
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATTATAATTAAT
Found at i:14854246 original size:38 final size:38
Alignment explanation
Indices: 14854195--14854272 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
14854185 CATATTAATA
*
14854195 CAAATATTAACTTTTTAAGTTAATATGTTATTTATTGC
1 CAAATATTAACTTTTTAAGTTAATATATTATTTATTGC
14854233 CAAATATTAACTTTTTAAGTTAATATATTATTTATTGC
1 CAAATATTAACTTTTTAAGTTAATATATTATTTATTGC
14854271 CA
1 CA
14854273 TTATAAAATA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (38 bp):
CAAATATTAACTTTTTAAGTTAATATATTATTTATTGC
Found at i:14855099 original size:2 final size:2
Alignment explanation
Indices: 14855092--14855122 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
14855082 TGGAAATCTA
*
14855092 AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
14855123 ATAAAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:14855129 original size:10 final size:12
Alignment explanation
Indices: 14855094--14855130 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14855084 GAAATCTAAT
*
14855094 ATATATATATAT
1 ATATATATATAA
14855106 ATATATATATAA
1 ATATATATATAA
14855118 ATATA-ATA-AA
1 ATATATATATAA
14855128 ATA
1 ATA
14855131 AAAATAAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 5 0.21
11 3 0.12
12 16 0.67
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAA
Found at i:14856300 original size:45 final size:44
Alignment explanation
Indices: 14856247--14856334 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 44
14856237 TTCTTTAGTA
14856247 ATATTATATATATATTATGATTATATCAAAATTCAAAAACCAAT
1 ATATTATATATATATTATGATTATATCAAAATTCAAAAACCAAT
14856291 ATATATATATATATATTATGATTATATCAAAATTCAAAAACCAA
1 ATAT-TATATATATATTATGATTATATCAAAATTCAAAAACCAA
14856335 CAGTTTGCAC
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 4 0.09
45 39 0.91
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (44 bp):
ATATTATATATATATTATGATTATATCAAAATTCAAAAACCAAT
Found at i:14856556 original size:13 final size:14
Alignment explanation
Indices: 14856537--14856574 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
14856527 TTATTATAAA
14856537 ATTTAAATTATTT-
1 ATTTAAATTATTTG
*
14856550 TTTTAAATTGATTTG
1 ATTTAAATT-ATTTG
14856565 ATTTAAATTA
1 ATTTAAATTA
14856575 AAATTTATCG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 8 0.38
14 5 0.24
15 8 0.38
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (14 bp):
ATTTAAATTATTTG
Found at i:14856613 original size:25 final size:25
Alignment explanation
Indices: 14856585--14856633 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
14856575 AAATTTATCG
14856585 ATTTAATTTGATTTTT-TATTTTTAA
1 ATTTAATTT-ATTTTTCTATTTTTAA
*
14856610 ATTTAATTTTTTTTTCTATTTTTA
1 ATTTAATTTATTTTTCTATTTTTA
14856634 TATATTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (25 bp):
ATTTAATTTATTTTTCTATTTTTAA
Found at i:14856794 original size:13 final size:12
Alignment explanation
Indices: 14856760--14856812 Score: 54
Period size: 13 Copynumber: 4.3 Consensus size: 12
14856750 TTACACCTCG
*
14856760 ATTTAAAATTTA
1 ATTTTAAATTTA
*
14856772 ATCTT-AATTTA
1 ATTTTAAATTTA
*
14856783 ATTTATACATTTA
1 ATTT-TAAATTTA
14856796 ATATTTAAATTTA
1 AT-TTTAAATTTA
14856809 ATTT
1 ATTT
14856813 GAATTATATA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
11 9 0.27
12 6 0.18
13 16 0.48
14 2 0.06
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTTTAAATTTA
Found at i:14856795 original size:31 final size:33
Alignment explanation
Indices: 14856760--14856822 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 33
14856750 TTACACCTCG
14856760 ATTTAAAATTT-AATCTTAATTT-AATT-TATAC
1 ATTTAAAATTTAAAT-TTAATTTGAATTATATAC
*
14856791 ATTTAATATTTAAATTTAATTTGAATTATATA
1 ATTTAAAATTTAAATTTAATTTGAATTATATA
14856823 AAAAATTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 17 0.61
32 7 0.25
33 4 0.14
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (33 bp):
ATTTAAAATTTAAATTTAATTTGAATTATATAC
Found at i:14864161 original size:20 final size:20
Alignment explanation
Indices: 14864124--14864161 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14864114 TATTTATTTT
*
14864124 TTAAAATAAATTATTTTTGG
1 TTAAAATAAATTACTTTTGG
14864144 TTAAAA-AAATTACCTTTT
1 TTAAAATAAATTA-CTTTT
14864162 TTTAGAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (20 bp):
TTAAAATAAATTACTTTTGG
Found at i:14866308 original size:11 final size:11
Alignment explanation
Indices: 14866283--14866331 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
14866273 CCAAAAAATT
**
14866283 AAAAATTTTTG
1 AAAAATTTTAA
*
14866294 AAAAATTCT-A
1 AAAAATTTTAA
*
14866304 TAAAATTTTAA
1 AAAAATTTTAA
14866315 AAAAATTTTAA
1 AAAAATTTTAA
14866326 AAAAAT
1 AAAAAT
14866332 ATATAAAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
10 7 0.22
11 25 0.78
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (11 bp):
AAAAATTTTAA
Found at i:14866316 original size:19 final size:18
Alignment explanation
Indices: 14866281--14866415 Score: 99
Period size: 19 Copynumber: 6.9 Consensus size: 18
14866271 TTCCAAAAAA
14866281 TTAAAAATTTTTGAAAAATT
1 TTAAAAA-TTTT-AAAAATT
*
14866301 CTATAAAATTTTAAAAAAATT
1 TTA-AAAATTTT--AAAAATT
* *
14866322 TTAAAAAAATATATAAAATT
1 TT-AAAAATTTTA-AAAATT
* *
14866342 TTGGAAACTTTTAAAAATT
1 TT-AAAAATTTTAAAAATT
*
14866361 TTAAAAATATTTAAAAAAT
1 TTAAAAAT-TTTAAAAATT
*
14866380 TTAAAATTTTCTAAAAATT
1 TTAAAAATTT-TAAAAATT
*
14866399 CTAGAAAATTTTAAAAA
1 TTA-AAAATTTTAAAAA
14866416 ATTCAAAAGA
Statistics
Matches: 91, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
18 6 0.07
19 40 0.44
20 26 0.29
21 18 0.20
22 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (18 bp):
TTAAAAATTTTAAAAATT
Found at i:14866327 original size:9 final size:9
Alignment explanation
Indices: 14866281--14866415 Score: 99
Period size: 10 Copynumber: 13.8 Consensus size: 9
14866271 TTCCAAAAAA
14866281 TTAAAAATTT
1 TTAAAAA-TT
14866291 TTGAAAAATT
1 TT-AAAAATT
*
14866301 CTATAAAATT
1 TTA-AAAATT
14866311 TTAAAAAAATT
1 TT--AAAAATT
*
14866322 TTAAAAAAAT
1 TT-AAAAATT
*
14866332 ATATAAAATT
1 TTA-AAAATT
* *
14866342 TTGGAAACTT
1 TT-AAAAATT
14866352 TTAAAAATT
1 TTAAAAATT
14866361 TTAAAAATAT
1 TTAAAAAT-T
*
14866371 TTAAAAAAT
1 TTAAAAATT
*
14866380 TTAAAATTT
1 TTAAAAATT
14866389 TCTAAAAATT
1 T-TAAAAATT
*
14866399 CTAGAAAATT
1 TTA-AAAATT
14866409 TTAAAAA
1 TTAAAAA
14866416 ATTCAAAAGA
Statistics
Matches: 100, Mismatches: 16, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
9 30 0.30
10 56 0.56
11 13 0.13
12 1 0.01
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (9 bp):
TTAAAAATT
Found at i:14866478 original size:10 final size:9
Alignment explanation
Indices: 14866472--14866524 Score: 52
Period size: 10 Copynumber: 5.6 Consensus size: 9
14866462 TCCAAAATTC
14866472 TAAAAAAAT
1 TAAAAAAAT
*
14866481 CCAAAAAAAT
1 -TAAAAAAAT
*
14866491 TAAAAAATAA
1 TAAAAAA-AT
14866501 TAAAAAAAT
1 TAAAAAAAT
*
14866510 TAATAAAATT
1 TAA-AAAAAT
14866520 TAAAA
1 TAAAA
14866525 TTTTGTTAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
9 12 0.33
10 24 0.67
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.23
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:14866695 original size:12 final size:13
Alignment explanation
Indices: 14866670--14866696 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14866660 TCTTTATATA
14866670 TTTTTCAAATTTT
1 TTTTTCAAATTTT
14866683 TTTTTCAAATTTT
1 TTTTTCAAATTTT
14866696 T
1 T
14866697 AGATTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTCAAATTTT
Found at i:14866711 original size:19 final size:19
Alignment explanation
Indices: 14866681--14866745 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
14866671 TTTTCAAATT
*
14866681 TTTTTTTCAAATTTTTAGA
1 TTTTTTTAAAATTTTTAGA
* *
14866700 TTTTATTAAAA-TTTTAGG
1 TTTTTTTAAAATTTTTAGA
** *
14866718 TTTTTTTTTATTTTTTAGA
1 TTTTTTTAAAATTTTTAGA
14866737 TTTTTTTAA
1 TTTTTTTAA
14866746 TTTTAAAAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 2
0.74 0.21 0.04
Matches are distributed among these distances:
18 13 0.37
19 22 0.63
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.68
Consensus pattern (19 bp):
TTTTTTTAAAATTTTTAGA
Found at i:14866882 original size:15 final size:15
Alignment explanation
Indices: 14866862--14866891 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14866852 TAAATTTAGG
*
14866862 AAATTTTAGTTTTTA
1 AAATTTTAATTTTTA
14866877 AAATTTTAATTTTTA
1 AAATTTTAATTTTTA
14866892 TGGATTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (15 bp):
AAATTTTAATTTTTA
Found at i:14867011 original size:11 final size:11
Alignment explanation
Indices: 14866981--14867014 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
14866971 ACTTTTAATG
14866981 TTTTATAATTT
1 TTTTATAATTT
*
14866992 TTGTA-AATTT
1 TTTTATAATTT
14867002 TTTTATAATTT
1 TTTTATAATTT
14867013 TT
1 TT
14867015 CAAAAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:14867162 original size:19 final size:20
Alignment explanation
Indices: 14867131--14867182 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
14867121 ATTTTTTAAA
*
14867131 TTAAAAGTTTTTTATAAA-TT
1 TTAAAA-TTTTTTAAAAACTT
14867151 TTAAAATTTTTTAAAAACTT
1 TTAAAATTTTTTAAAAACTT
* *
14867171 TTTAGATTTTTT
1 TTAAAATTTTTT
14867183 TCAAAATTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (20 bp):
TTAAAATTTTTTAAAAACTT
Found at i:14867172 original size:20 final size:19
Alignment explanation
Indices: 14867131--14867196 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 19
14867121 ATTTTTTAAA
*
14867131 TTAAAAGTTTTTTATAAATT
1 TTAAAA-TTTTTTAAAAATT
14867151 TTAAAATTTTTTAAAAACTTT
1 TTAAAATTTTTTAAAAA--TT
* * *
14867172 TTAGATTTTTTTCAAAATT
1 TTAAAATTTTTTAAAAATT
*
14867191 CTAAAA
1 TTAAAA
14867197 AATGTTTTAG
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
19 15 0.41
20 6 0.16
21 16 0.43
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.52
Consensus pattern (19 bp):
TTAAAATTTTTTAAAAATT
Found at i:14867259 original size:20 final size:19
Alignment explanation
Indices: 14867234--14867278 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
14867224 TTTTGTTGTG
* *
14867234 AAAATTGTTTGAAAGTTTT
1 AAAATTGTTTCAAAATTTT
*
14867253 CAAAATTTTTTCAAAATTTT
1 -AAAATTGTTTCAAAATTTT
14867273 AAAATT
1 AAAATT
14867279 TTTAGAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.42, C:0.04, G:0.07, T:0.47
Consensus pattern (19 bp):
AAAATTGTTTCAAAATTTT
Found at i:14867291 original size:16 final size:16
Alignment explanation
Indices: 14867254--14867321 Score: 64
Period size: 16 Copynumber: 4.0 Consensus size: 16
14867244 GAAAGTTTTC
14867254 AAAATTTTTTCAAAATTTT
1 AAAA-TTTTT-AAAA-TTT
*
14867273 AAAATTTTTAGAATTT
1 AAAATTTTTAAAATTT
* *
14867289 AAATTTTTTTAAAATAT
1 AAA-ATTTTTAAAATTT
*
14867306 AGAATTTTTAAAATTT
1 AAAATTTTTAAAATTT
14867322 TTATTATTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
16 17 0.41
17 15 0.37
18 5 0.12
19 4 0.10
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (16 bp):
AAAATTTTTAAAATTT
Found at i:14867297 original size:17 final size:17
Alignment explanation
Indices: 14867255--14867314 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
14867245 AAAGTTTTCA
*
14867255 AAATTTTTTCAAAATTTT
1 AAATTTTTTTAAAA-TTT
* *
14867273 AAA-ATTTTTAGAATTT
1 AAATTTTTTTAAAATTT
*
14867289 AAATTTTTTTAAAATAT
1 AAATTTTTTTAAAATTT
14867306 AGAATTTTT
1 A-AATTTTT
14867315 AAAATTTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
16 6 0.18
17 18 0.53
18 10 0.29
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (17 bp):
AAATTTTTTTAAAATTT
Found at i:14867312 original size:33 final size:34
Alignment explanation
Indices: 14867255--14867321 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 34
14867245 AAAGTTTTCA
* *
14867255 AAATTTTTTCAAAATTTTAAAATTTTTAGAATTT
1 AAATTTTTTCAAAATTATAAAATTTTTAAAATTT
* *
14867289 AAATTTTTTTAAAA-TATAGAATTTTTAAAATTT
1 AAATTTTTTCAAAATTATAAAATTTTTAAAATTT
14867322 TTATTATTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
33 16 0.55
34 13 0.45
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (34 bp):
AAATTTTTTCAAAATTATAAAATTTTTAAAATTT
Found at i:14869040 original size:21 final size:20
Alignment explanation
Indices: 14869002--14869054 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
14868992 AAGAAAGAAA
*
14869002 GAAAGAAAAAAACTTAAAAAAG
1 GAAA-AAAAAAACGT-AAAAAG
*
14869024 GAAAAAAAAAAGGTAAAAAG
1 GAAAAAAAAAACGTAAAAAG
*
14869044 TAAAAAAAAAA
1 GAAAAAAAAAA
14869055 AATTTATTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 16 0.57
21 8 0.29
22 4 0.14
ACGTcount: A:0.77, C:0.02, G:0.13, T:0.08
Consensus pattern (20 bp):
GAAAAAAAAAACGTAAAAAG
Found at i:14869483 original size:25 final size:24
Alignment explanation
Indices: 14869455--14869510 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 24
14869445 TTTAAAATAT
14869455 AAAAAATGTTAAA-AAAATAAAAAGG
1 AAAAAATG--AAAGAAAATAAAAAGG
* *
14869480 AAAAGTATGAAAGAAAATAAAAAGT
1 AAAA-AATGAAAGAAAATAAAAAGG
14869505 AAAAAA
1 AAAAAA
14869511 GATGCTTGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
24 4 0.15
25 19 0.73
26 3 0.12
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.14
Consensus pattern (24 bp):
AAAAAATGAAAGAAAATAAAAAGG
Found at i:14869994 original size:15 final size:14
Alignment explanation
Indices: 14869974--14870012 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 14
14869964 AAAAAGAAAG
14869974 ATAAAATAAATGAA
1 ATAAAATAAATGAA
14869988 TATAAAA-AATATGAA
1 -ATAAAATAA-ATGAA
14870003 ATAAAATAAA
1 ATAAAATAAA
14870013 GGATGATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (14 bp):
ATAAAATAAATGAA
Found at i:14872859 original size:2 final size:2
Alignment explanation
Indices: 14872852--14872893 Score: 75
Period size: 2 Copynumber: 21.0 Consensus size: 2
14872842 TTATTGATAT
*
14872852 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AG AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
14872894 GGACTAACAC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.48, G:0.02, T:0.00
Consensus pattern (2 bp):
AC
Found at i:14879107 original size:25 final size:25
Alignment explanation
Indices: 14879079--14879130 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
14879069 TACATAGTGG
* *
14879079 TTTCTGGTATATTTTTTTTGTTATT
1 TTTCTGGTATATTTCTGTTGTTATT
14879104 TTTCTGGTATATTTCTGTTGTTATT
1 TTTCTGGTATATTTCTGTTGTTATT
14879129 TT
1 TT
14879131 CTTTAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.12, C:0.06, G:0.13, T:0.69
Consensus pattern (25 bp):
TTTCTGGTATATTTCTGTTGTTATT
Found at i:14879294 original size:23 final size:23
Alignment explanation
Indices: 14879264--14879310 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
14879254 TAACCTTTTC
14879264 CAAAAAAATAATTTCTCCTCTCT
1 CAAAAAAATAATTTCTCCTCTCT
14879287 CAAAAAAATAATTTCTCCTCTCT
1 CAAAAAAATAATTTCTCCTCTCT
14879310 C
1 C
14879311 GCTGCCAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.34
Consensus pattern (23 bp):
CAAAAAAATAATTTCTCCTCTCT
Found at i:14881528 original size:67 final size:67
Alignment explanation
Indices: 14881440--14881575 Score: 168
Period size: 67 Copynumber: 2.0 Consensus size: 67
14881430 TCGCATAAGA
* *
14881440 ATATAATCATATTTTGTCAATCAATAAAACTCATGAAACTATCATAATGTGTGACTGAAA-TTTA
1 ATATAATCATATTTTGTCAATCAATAAAACTCATGAAACAATCATAATGTATGACT-AAAGTTTA
14881504 ATC
65 ATC
* * * ** *
14881507 ATATAATTATATATTT-TCAATCACTAAAACTCATTAAGGAATCATAATGTATTACTAAAGTTTA
1 ATATAATCATAT-TTTGTCAATCAATAAAACTCATGAAACAATCATAATGTATGACTAAAGTTTA
14881571 ATC
65 ATC
14881574 AT
1 AT
14881576 TTATCAATAG
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
66 3 0.05
67 53 0.90
68 3 0.05
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.38
Consensus pattern (67 bp):
ATATAATCATATTTTGTCAATCAATAAAACTCATGAAACAATCATAATGTATGACTAAAGTTTAA
TC
Found at i:14881924 original size:19 final size:19
Alignment explanation
Indices: 14881881--14881924 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
14881871 TCACAAGTTT
*
14881881 TAAATAAAAATTAAATAAA
1 TAAATTAAAATTAAATAAA
14881900 TAAATTAAAATTAAATAAA
1 TAAATTAAAATTAAATAAA
14881919 TAAATT
1 TAAATT
14881925 TGAATATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
TAAATTAAAATTAAATAAA
Found at i:14881930 original size:14 final size:15
Alignment explanation
Indices: 14881888--14881919 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14881878 TTTTAAATAA
14881888 AAATT-AAA-TAAAT
1 AAATTAAAATTAAAT
14881901 AAATTAAAATTAAAT
1 AAATTAAAATTAAAT
14881916 AAAT
1 AAAT
14881920 AAATTTGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.29
14 3 0.18
15 9 0.53
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAATTAAAATTAAAT
Done.