Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168004.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_26, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16099665
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 97000 characters in sequence are not A, C, G, or T
File 74 of 77
Found at i:14888169 original size:308 final size:311
Alignment explanation
Indices: 14887769--14888398 Score: 1124
Period size: 322 Copynumber: 2.0 Consensus size: 311
14887759 ACATAGGAAC
14887769 TGACACTGGAGCAAGTGTAAGAGTCCCTGCATCATATTGTGGAATTCTTGGATTTCGGCCTTCAC
1 TGACACTGGAGCAAGTGTAAGAGTCCCTGCATCATATTGTGGAATTCTTGGATTTCGGCCTTCAC
14887834 TTGGTGCCATCTCTACTGTAGGAGTTG-T-TC-C-TTGATACTGTGGGTAAGGGCTAAATCTGAT
66 TTGGTGCCATCTCTACTGTAGGAGTTGTTGTCACATTGATACTGTGGGTAAGGGCTAAATCTGAT
14887895 GGCACCTTTTTTGAAATGTACATAAGAGAAATTTTAATTCTGATGACCATAGAAGTACACTTGGA
131 GGCACCTTTTTTGAAATGTACATAAGAGAAATTTTAATTCTGATGACCATAGAAGTACACTTGGA
14887960 AAAGCCTAATATCAAGATTATTGTTTAATCTTGATTACCTGCAATGTTTAAACACAGTTCAAAGT
196 AAAGCCTAATATCAAGATTATTGTTTAATCTTGATTACCTGCAATGTTT-AACACAGTTCAAAGT
14888025 CAACAAATTTATGGACCAAACATATTAACTTGTGAACAATATTTTCCTCGGT
260 CAACAAATTTATGGACCAAACATATTAACTTGTGAACAATATTTTCCTCGGT
14888077 TGACACTGGAGCAAGTGTAAGAGTCCCTGCATCATATTGTGGAATTCTTGGATTTCGGCCTTCAC
1 TGACACTGGAGCAAGTGTAAGAGTCCCTGCATCATATTGTGGAATTCTTGGATTTCGGCCTTCAC
14888142 TTGGTGCCATCTCTACTGTAGGAGTTGTTCCTATGTCACAGAGTTTTGATACTGTGGGTAAGGGC
66 TTGGTGCCATCTCTACTGTAGGAGTTG----T-TGTCAC--A---TTGATACTGTGGGTAAGGGC
*
14888207 TAAATCTGATTGCACCTTTTTTGAAATGTACATAAGAGAAATTTTAATTCTGATGACCATAGAAG
121 TAAATCTGATGGCACCTTTTTTGAAATGTACATAAGAGAAATTTTAATTCTGATGACCATAGAAG
14888272 TACACTTGGAAAAGCCTAATATCAAGATTATTGTTTAATCTTGATTACCTGCAATGTTTAACACA
186 TACACTTGGAAAAGCCTAATATCAAGATTATTGTTTAATCTTGATTACCTGCAATGTTTAACACA
14888337 GTTCAAAGTCAACAAATTTATGGACCAAACATATTAACTTGTGAACAATATTTTCCTCGGT
251 GTTCAAAGTCAACAAATTTATGGACCAAACATATTAACTTGTGAACAATATTTTCCTCGGT
14888398 T
1 T
14888399 TTTCTTTTTT
Statistics
Matches: 307, Mismatches: 1, Indels: 15
0.95 0.00 0.05
Matches are distributed among these distances:
308 92 0.30
314 1 0.00
315 2 0.01
316 1 0.00
321 68 0.22
322 143 0.47
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (311 bp):
TGACACTGGAGCAAGTGTAAGAGTCCCTGCATCATATTGTGGAATTCTTGGATTTCGGCCTTCAC
TTGGTGCCATCTCTACTGTAGGAGTTGTTGTCACATTGATACTGTGGGTAAGGGCTAAATCTGAT
GGCACCTTTTTTGAAATGTACATAAGAGAAATTTTAATTCTGATGACCATAGAAGTACACTTGGA
AAAGCCTAATATCAAGATTATTGTTTAATCTTGATTACCTGCAATGTTTAACACAGTTCAAAGTC
AACAAATTTATGGACCAAACATATTAACTTGTGAACAATATTTTCCTCGGT
Found at i:14893543 original size:46 final size:44
Alignment explanation
Indices: 14893478--14893566 Score: 160
Period size: 46 Copynumber: 2.0 Consensus size: 44
14893468 TTCTTTAGTA
14893478 ATATTATATATATATTATGATTATATCAAAATTCAAAAACCAAT
1 ATATTATATATATATTATGATTATATCAAAATTCAAAAACCAAT
14893522 ATATATATATATATATTTATGATTATATCAAAATTCAAAAACCAA
1 ATAT-TATATATATA-TTATGATTATATCAAAATTCAAAAACCAA
14893567 CAGTTGCACT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
44 4 0.09
45 10 0.23
46 29 0.67
ACGTcount: A:0.51, C:0.09, G:0.02, T:0.38
Consensus pattern (44 bp):
ATATTATATATATATTATGATTATATCAAAATTCAAAAACCAAT
Found at i:14893785 original size:13 final size:14
Alignment explanation
Indices: 14893767--14893804 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
14893757 TATTATAAAA
14893767 TTTTAAATTATTT-
1 TTTTAAATTATTTG
14893780 TTTTAAATTGATTTG
1 TTTTAAATT-ATTTG
*
14893795 ATTTAAATTA
1 TTTTAAATTA
14893805 AAATTTATCG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
13 9 0.41
14 5 0.23
15 8 0.36
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (14 bp):
TTTTAAATTATTTG
Found at i:14893843 original size:25 final size:26
Alignment explanation
Indices: 14893815--14893864 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
14893805 AAATTTATCG
14893815 ATTTAATTTGATTTTT-TATTTTTAA
1 ATTTAATTTGATTTTTCTATTTTTAA
**
14893840 ATTTAATTTTTTTTTTCTATTTTTA
1 ATTTAATTTGATTTTTCTATTTTTA
14893865 TATATTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (26 bp):
ATTTAATTTGATTTTTCTATTTTTAA
Found at i:14893903 original size:24 final size:24
Alignment explanation
Indices: 14893858--14893905 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14893848 TTTTTTTTCT
* *
14893858 ATTTTTATATATTATTTAATAAAA
1 ATTTTAATATATTATGTAATAAAA
14893882 ATTTTAATATATT-TGTATATAAAA
1 ATTTTAATATATTATGTA-ATAAAA
14893906 TAATTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 3 0.14
24 18 0.86
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
ATTTTAATATATTATGTAATAAAA
Found at i:14894036 original size:30 final size:32
Alignment explanation
Indices: 14893989--14894071 Score: 83
Period size: 27 Copynumber: 2.8 Consensus size: 32
14893979 ACACCTCGAT
14893989 TTAAAATTTAATCTTAATTT-AATT-TATACA
1 TTAAAATTTAATCTTAATTTGAATTATATACA
*
14894019 TTAATATTTAAAT-TTAATTTGAATTATATA-A
1 TTAAAATTT-AATCTTAATTTGAATTATATACA
*
14894050 --AAAA-TTAAT-TTAAATTGAATTA
1 TTAAAATTTAATCTTAATTTGAATTA
14894072 AATAATATAA
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
27 15 0.32
28 2 0.04
29 3 0.06
30 15 0.32
31 8 0.17
32 4 0.09
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.48
Consensus pattern (32 bp):
TTAAAATTTAATCTTAATTTGAATTATATACA
Found at i:14898097 original size:14 final size:14
Alignment explanation
Indices: 14898075--14898106 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
14898065 TAAAGTAGCA
14898075 TTGTTTTTTT-TTT
1 TTGTTTTTTTGTTT
14898088 TTGTTTTTTTGTTT
1 TTGTTTTTTTGTTT
14898102 TTGTT
1 TTGTT
14898107 AATGTTTCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (14 bp):
TTGTTTTTTTGTTT
Found at i:14901511 original size:18 final size:17
Alignment explanation
Indices: 14901466--14901512 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 17
14901456 AAGTACATTT
14901466 ATTATTTTATATTTTGA
1 ATTATTTTATATTTTGA
*
14901483 ATTTATATTATATTTTGA
1 A-TTATTTTATATTTTGA
14901501 ATTATGTTTATA
1 ATTAT-TTTATA
14901513 ACTAATTTGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
17 5 0.19
18 21 0.81
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (17 bp):
ATTATTTTATATTTTGA
Found at i:14903378 original size:17 final size:17
Alignment explanation
Indices: 14903358--14903399 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
14903348 CTTAAAATTT
14903358 TTTAAAAATAAAAAAAA
1 TTTAAAAATAAAAAAAA
** *
14903375 TTTAAAAATTTAAAAAG
1 TTTAAAAATAAAAAAAA
14903392 TTTAAAAA
1 TTTAAAAA
14903400 AATTTTAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (17 bp):
TTTAAAAATAAAAAAAA
Found at i:14903381 original size:9 final size:9
Alignment explanation
Indices: 14903369--14903459 Score: 62
Period size: 9 Copynumber: 9.7 Consensus size: 9
14903359 TTAAAAATAA
14903369 AAAAAATTT
1 AAAAAATTT
14903378 -AAAAATTT
1 AAAAAATTT
*
14903386 AAAAAGTTT
1 AAAAAATTT
14903395 AAAAAAATTTT
1 -AAAAAA-TTT
14903406 AAAGAAATTTT
1 AAA-AAA-TTT
*
14903417 AAGAAATTCT
1 AAAAAATT-T
14903427 -AAAAATTCT
1 AAAAAATT-T
14903436 AAAATAATTT
1 AAAA-AATTT
* *
14903446 -TAAAATTC
1 AAAAAATTT
14903454 AAAAAA
1 AAAAAA
14903460 AAAAAATTCT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
8 12 0.18
9 23 0.34
10 16 0.24
11 16 0.24
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (9 bp):
AAAAAATTT
Found at i:14903451 original size:11 final size:10
Alignment explanation
Indices: 14903330--14903450 Score: 74
Period size: 10 Copynumber: 12.3 Consensus size: 10
14903320 TCACTAAAAC
*
14903330 AAAAATTTAGA
1 AAAAATTT-TA
14903341 AAAAATTCTT-
1 AAAAATT-TTA
* *
14903351 AAAATTTTTT
1 AAAAATTTTA
*
14903361 AAAAA--TAA
1 AAAAATTTTA
*
14903369 AAAAAATTT-
1 AAAAATTTTA
14903378 AAAAA-TTTA
1 AAAAATTTTA
* *
14903387 AAAAGTTTAA
1 AAAAATTTTA
14903397 AAAAATTTTA
1 AAAAATTTTA
14903407 AAGAAATTTTA
1 AA-AAATTTTA
* *
14903418 AGAAATTCT-
1 AAAAATTTTA
*
14903427 AAAAATTCTA
1 AAAAATTTTA
14903437 AAATAATTTTA
1 AAA-AATTTTA
14903448 AAA
1 AAA
14903451 TTCAAAAAAA
Statistics
Matches: 87, Mismatches: 14, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
8 9 0.10
9 19 0.22
10 33 0.38
11 25 0.29
12 1 0.01
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (10 bp):
AAAAATTTTA
Found at i:14903473 original size:9 final size:8
Alignment explanation
Indices: 14903370--14903458 Score: 52
Period size: 8 Copynumber: 9.6 Consensus size: 8
14903360 TAAAAATAAA
14903370 AAAAATTT
1 AAAAATTT
14903378 AAAAATTT
1 AAAAATTT
14903386 AAAAAGTTT
1 AAAAA-TTT
14903395 AAAAAAATTTT
1 --AAAAA-TTT
14903406 AAAGAAATTTT
1 -AA-AAA-TTT
14903417 AAGAAATTCT
1 AA-AAATT-T
14903427 AAAAATTCT
1 AAAAATT-T
14903436 AAAATAATTT
1 -AAA-AATTT
* *
14903446 TAAAATTC
1 AAAAATTT
14903454 AAAAA
1 AAAAA
14903459 AAAAAAATTC
Statistics
Matches: 70, Mismatches: 4, Indels: 14
0.80 0.05 0.16
Matches are distributed among these distances:
8 21 0.30
9 14 0.20
10 16 0.23
11 19 0.27
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (8 bp):
AAAAATTT
Found at i:14903574 original size:11 final size:9
Alignment explanation
Indices: 14903556--14903690 Score: 99
Period size: 10 Copynumber: 13.8 Consensus size: 9
14903546 TTCAAAAAAA
14903556 TTAAAAATTT
1 TTAAAAA-TT
14903566 TTGAAAAATT
1 TT-AAAAATT
*
14903576 CTATAAAATT
1 TTA-AAAATT
14903586 TTAAAAAATTT
1 TT-AAAAA-TT
*
14903597 TTAAAAAAAT
1 TT-AAAAATT
*
14903607 ATATAAAATT
1 TTA-AAAATT
* *
14903617 TTGGAAACTT
1 TT-AAAAATT
*
14903627 TTAAAAAAT
1 TTAAAAATT
14903636 TTAAAAATAT
1 TTAAAAAT-T
*
14903646 TTAAAAAAT
1 TTAAAAATT
14903655 TTAAAAATT
1 TTAAAAATT
14903664 TCTAAAAATT
1 T-TAAAAATT
*
14903674 CTAGAAAATT
1 TTA-AAAATT
14903684 TTAAAAA
1 TTAAAAA
14903691 ATTCAAAAGA
Statistics
Matches: 100, Mismatches: 16, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
9 29 0.29
10 55 0.55
11 16 0.16
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (9 bp):
TTAAAAATT
Found at i:14903587 original size:20 final size:19
Alignment explanation
Indices: 14903557--14903698 Score: 112
Period size: 20 Copynumber: 7.3 Consensus size: 19
14903547 TCAAAAAAAT
*
14903557 TAAAAATTTTTGAAAAATTC
1 TAAAAA-TTTTAAAAAATTC
*
14903577 TATAAAATTTTAAAAAATTTT
1 TA-AAAATTTTAAAAAA-TTC
* * * *
14903598 TAAAAAAATATATAAAATTT
1 T-AAAAATTTTAAAAAATTC
* *
14903618 TGGAAACTTTTAAAAAATT-
1 T-AAAAATTTTAAAAAATTC
14903637 TAAAAATATTTAAAAAATT-
1 TAAAAAT-TTTAAAAAATTC
14903656 TAAAAATTTCT-AAAAATTC
1 TAAAAATTT-TAAAAAATTC
14903675 TAGAAAATTTTAAAAAATTC
1 TA-AAAATTTTAAAAAATTC
14903695 -AAAA
1 TAAAA
14903699 GAAAAAACTT
Statistics
Matches: 101, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
18 16 0.16
19 24 0.24
20 42 0.42
21 18 0.18
22 1 0.01
ACGTcount: A:0.56, C:0.04, G:0.03, T:0.37
Consensus pattern (19 bp):
TAAAAATTTTAAAAAATTC
Found at i:14903591 original size:29 final size:28
Alignment explanation
Indices: 14903542--14903698 Score: 120
Period size: 28 Copynumber: 5.4 Consensus size: 28
14903532 ATTTTTTTGG
* * * *
14903542 AAAATTCAAAAAAATTAAAAATTTTTGA
1 AAAATTCTAAAAATTTTAAAATTTTTAA
14903570 AAAATTCTATAAAATTTTAAAAAATTTTTAA
1 AAAATTCTA-AAAATTTT--AAAATTTTTAA
* * * *
14903601 AAAAATATATAAAATTTTGGAAACTTTTAA
1 AAAATTCTA-AAAATTTT-AAAATTTTTAA
**
14903631 AAAATT-TAAAAATATTTAAAAAATTTAA
1 AAAATTCTAAAAAT-TTTAAAATTTTTAA
* * *
14903659 AAATTTCTAAAAATTCTAGAAAATTTTAA
1 AAAATTCTAAAAATTTTA-AAATTTTTAA
14903688 AAAATTC-AAAA
1 AAAATTCTAAAA
14903699 GAAAAAACTT
Statistics
Matches: 106, Mismatches: 17, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
28 33 0.31
29 33 0.31
30 14 0.13
31 26 0.25
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (28 bp):
AAAATTCTAAAAATTTTAAAATTTTTAA
Found at i:14903640 original size:9 final size:9
Alignment explanation
Indices: 14903542--14903698 Score: 82
Period size: 9 Copynumber: 16.2 Consensus size: 9
14903532 ATTTTTTTGG
*
14903542 AAAATTCAA
1 AAAATTTAA
*
14903551 AAAAATTAA
1 AAAATTTAA
* *
14903560 AAATTTTTGA
1 AAA-ATTTAA
14903570 AAAATTCTATA
1 AAAATT-TA-A
*
14903581 AAATTTTAA
1 AAAATTTAA
14903590 AAAATTTTTAAA
1 AAAA--TTT-AA
*
14903602 AAAATATATA
1 AAAATTTA-A
* *
14903612 AAATTTTGGA
1 AAAATTT-AA
**
14903622 AACTTTTAA
1 AAAATTTAA
14903631 AAAATTTAA
1 AAAATTTAA
14903640 AAATATTTAA
1 AAA-ATTTAA
14903650 AAAATTT-A
1 AAAATTTAA
*
14903658 AAAATTTCTA
1 AAAATTT-AA
14903668 AAAATTCTAGA
1 AAAATT-TA-A
*
14903679 AAATTTTAA
1 AAAATTTAA
*
14903688 AAAATTCAA
1 AAAATTTAA
14903697 AA
1 AA
14903699 GAAAAAACTT
Statistics
Matches: 114, Mismatches: 21, Indels: 26
0.71 0.13 0.16
Matches are distributed among these distances:
8 8 0.07
9 42 0.37
10 42 0.37
11 16 0.14
12 6 0.05
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.36
Consensus pattern (9 bp):
AAAATTTAA
Found at i:14903688 original size:19 final size:18
Alignment explanation
Indices: 14903549--14903698 Score: 113
Period size: 19 Copynumber: 7.7 Consensus size: 18
14903539 TGGAAAATTC
*
14903549 AAAAAAATTAAAAATTTTT
1 AAAAAATTTAAAAA-TTTT
*
14903568 GAAAAATTCTATAAAATTTT
1 AAAAAATT-TA-AAAATTTT
* *
14903588 AAAAAATTTTTAAAAAAATAT
1 AAAAAA--TTT-AAAAATTTT
* * *
14903609 ATAAAATTTTGGAAACTTTT
1 A-AAAAATTT-AAAAATTTT
14903629 AAAAAATTTAAAAATATTT
1 AAAAAATTTAAAAAT-TTT
14903648 AAAAAATTTAAAAATTTCT
1 AAAAAATTTAAAAATTT-T
14903667 -AAAAATTCTAGAAAATTTT
1 AAAAAATT-TA-AAAATTTT
*
14903686 AAAAAATTCAAAA
1 AAAAAATTTAAAA
14903699 GAAAAAACTT
Statistics
Matches: 105, Mismatches: 15, Indels: 23
0.73 0.10 0.16
Matches are distributed among these distances:
18 16 0.15
19 36 0.34
20 34 0.32
21 12 0.11
22 7 0.07
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.36
Consensus pattern (18 bp):
AAAAAATTTAAAAATTTT
Found at i:14904285 original size:12 final size:11
Alignment explanation
Indices: 14904260--14904293 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
14904250 ACTTTTAATG
14904260 TTTTATAATTT
1 TTTTATAATTT
*
14904271 TTATA-AATTT
1 TTTTATAATTT
14904281 TTTTATAATTT
1 TTTTATAATTT
14904292 TT
1 TT
14904294 CAAAACAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:14904437 original size:19 final size:20
Alignment explanation
Indices: 14904406--14904457 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
14904396 ATTTTTTAAA
*
14904406 TTAAAAGTTTTTTATAAA-TT
1 TTAAAA-TTTTTTAAAAACTT
14904426 TTAAAATTTTTTAAAAACTT
1 TTAAAATTTTTTAAAAACTT
* *
14904446 TTTAGATTTTTT
1 TTAAAATTTTTT
14904458 TCAAAATTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.58
Consensus pattern (20 bp):
TTAAAATTTTTTAAAAACTT
Found at i:14904447 original size:20 final size:19
Alignment explanation
Indices: 14904406--14904471 Score: 60
Period size: 21 Copynumber: 3.3 Consensus size: 19
14904396 ATTTTTTAAA
*
14904406 TTAAAAGTTTTTTATAAATT
1 TTAAAA-TTTTTTAAAAATT
14904426 TTAAAATTTTTTAAAAACTTT
1 TTAAAATTTTTTAAAAA--TT
* * *
14904447 TTAGATTTTTTTCAAAATT
1 TTAAAATTTTTTAAAAATT
*
14904466 CTAAAA
1 TTAAAA
14904472 AATGTTTTAG
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
19 15 0.41
20 6 0.16
21 16 0.43
ACGTcount: A:0.41, C:0.05, G:0.03, T:0.52
Consensus pattern (19 bp):
TTAAAATTTTTTAAAAATT
Found at i:14904567 original size:16 final size:16
Alignment explanation
Indices: 14904541--14904597 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
14904531 AATTTTTTCA
14904541 AAAATTTTAAAATTTTT
1 AAAA-TTTAAAATTTTT
* *
14904558 AGAATTTAAATTTTTTT
1 AAAATTTAAA-ATTTTT
* * *
14904575 ACAATATAGAATTTTT
1 AAAATTTAAAATTTTT
14904591 AAAATTT
1 AAAATTT
14904598 TTTATTAATT
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
16 16 0.52
17 15 0.48
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (16 bp):
AAAATTTAAAATTTTT
Found at i:14904573 original size:17 final size:18
Alignment explanation
Indices: 14904553--14904590 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
14904543 AATTTTAAAA
* *
14904553 TTTTTAGAATTTA-AATT
1 TTTTTACAATATAGAATT
14904570 TTTTTACAATATAGAATT
1 TTTTTACAATATAGAATT
14904588 TTT
1 TTT
14904591 AAAATTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (18 bp):
TTTTTACAATATAGAATT
Found at i:14904786 original size:26 final size:26
Alignment explanation
Indices: 14904757--14904806 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14904747 GGAAGTAAGC
* *
14904757 TTTTAGGTATCAATGTGAAAAAAAAA
1 TTTTAAGTACCAATGTGAAAAAAAAA
*
14904783 TTTTAAGTACCAATGTGAGAAAAA
1 TTTTAAGTACCAATGTGAAAAAAA
14904807 TAATAAAGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.30
Consensus pattern (26 bp):
TTTTAAGTACCAATGTGAAAAAAAAA
Found at i:14906286 original size:30 final size:31
Alignment explanation
Indices: 14906228--14906296 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
14906218 TTTGATGTAA
14906228 TAAAAAAAGAAAGAAAGAAAGAAATAAAAAC
1 TAAAAAAAGAAAGAAAGAAAGAAATAAAAAC
* * * *
14906259 TTAAAAAAGGAA-AAAGAAA-AAGGTAAAAAG
1 TAAAAAAAGAAAGAAAGAAAGAA-ATAAAAAC
14906289 TAAAAAAA
1 TAAAAAAA
14906297 AAAAATTATT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
29 2 0.06
30 20 0.62
31 10 0.31
ACGTcount: A:0.75, C:0.01, G:0.14, T:0.09
Consensus pattern (31 bp):
TAAAAAAAGAAAGAAAGAAAGAAATAAAAAC
Found at i:14906730 original size:25 final size:24
Alignment explanation
Indices: 14906702--14906757 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 24
14906692 TTTAAAATAT
14906702 AAAAAATGTTAAA-AAAATAAAAAGG
1 AAAAAATG--AAAGAAAATAAAAAGG
* *
14906727 AAAAGTATGAAAGAAAATAAAAAGT
1 AAAA-AATGAAAGAAAATAAAAAGG
14906752 AAAAAA
1 AAAAAA
14906758 GATGCTTGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
24 4 0.15
25 19 0.73
26 3 0.12
ACGTcount: A:0.73, C:0.00, G:0.12, T:0.14
Consensus pattern (24 bp):
AAAAAATGAAAGAAAATAAAAAGG
Found at i:14907267 original size:14 final size:15
Alignment explanation
Indices: 14907226--14907267 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
14907216 AAAAAGAAAG
14907226 ATAAAATAAATGAAT
1 ATAAAATAAATGAAT
14907241 ATAAAA-AATATGAA-
1 ATAAAATAA-ATGAAT
14907255 ATAAAATAAATGA
1 ATAAAATAAATGA
14907268 TGATATAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 12 0.48
15 13 0.52
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (15 bp):
ATAAAATAAATGAAT
Found at i:14908119 original size:12 final size:13
Alignment explanation
Indices: 14908102--14908132 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
14908092 TTATGGAAAA
14908102 TATTTTTA-TTTT
1 TATTTTTATTTTT
14908114 TATTTTTATTTTT
1 TATTTTTATTTTT
14908127 TATTTT
1 TATTTT
14908133 CAAATTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TATTTTTATTTTT
Found at i:14908120 original size:7 final size:6
Alignment explanation
Indices: 14908102--14908132 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
14908092 TTATGGAAAA
14908102 TATTTT TATTTT TATTTT TATTTTT TATTTT
1 TATTTT TATTTT TATTTT TA-TTTT TATTTT
14908133 CAAATTTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:14908686 original size:14 final size:14
Alignment explanation
Indices: 14908667--14908696 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14908657 ATTATTCTTA
14908667 GGGTGCAGACAAAG
1 GGGTGCAGACAAAG
14908681 GGGTGCAGACAAAG
1 GGGTGCAGACAAAG
14908695 GG
1 GG
14908697 AGCCTTTGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.47, T:0.07
Consensus pattern (14 bp):
GGGTGCAGACAAAG
Found at i:14909360 original size:14 final size:14
Alignment explanation
Indices: 14909341--14909382 Score: 50
Period size: 13 Copynumber: 2.9 Consensus size: 14
14909331 TTTTGAAATA
14909341 AAAAAAAAATATTT
1 AAAAAAAAATATTT
*
14909355 -AAAAAAATTATTTT
1 AAAAAAAAATA-TTT
14909369 AATAAAAAAATATT
1 AA-AAAAAAATATT
14909383 GAATAAGTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 9 0.39
14 3 0.13
15 3 0.13
16 8 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAAAAAAAATATTT
Found at i:14917893 original size:2 final size:2
Alignment explanation
Indices: 14917886--14917921 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
14917876 CTTTGTTATT
14917886 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14917922 CACACACGGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:14918501 original size:25 final size:26
Alignment explanation
Indices: 14918449--14918501 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 26
14918439 TACATAGTGG
* *
14918449 TTTCTGGTATATTTTTTTTTGTTATT
1 TTTCTGGTATATTTTCTGTTGTTATT
14918475 TTTCTGGTATA-TTTCTGTTGTTATT
1 TTTCTGGTATATTTTCTGTTGTTATT
14918500 TT
1 TT
14918502 CTTTAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.11, C:0.06, G:0.13, T:0.70
Consensus pattern (26 bp):
TTTCTGGTATATTTTCTGTTGTTATT
Found at i:14921265 original size:19 final size:19
Alignment explanation
Indices: 14921222--14921265 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
14921212 TCACAAGTTT
*
14921222 TAAATAAAAATTAAATAAA
1 TAAATTAAAATTAAATAAA
*
14921241 AAAATTAAAATTAAATAAA
1 TAAATTAAAATTAAATAAA
14921260 TAAATT
1 TAAATT
14921266 TGAATATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
TAAATTAAAATTAAATAAA
Found at i:14931058 original size:23 final size:22
Alignment explanation
Indices: 14931032--14931085 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
14931022 ATTTTAGTTC
14931032 TTTTTTTTACAGTCTAATCTTC-A
1 TTTTTTTTACA-T-TAATCTTCAA
* *
14931055 TTTTTTGGTGCATTAATCTTCAA
1 TTTTTT-TTACATTAATCTTCAA
14931078 TTTTTTTT
1 TTTTTTTT
14931086 CCTAATTGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 9 0.35
23 14 0.54
24 3 0.12
ACGTcount: A:0.19, C:0.13, G:0.07, T:0.61
Consensus pattern (22 bp):
TTTTTTTTACATTAATCTTCAA
Found at i:14934313 original size:17 final size:16
Alignment explanation
Indices: 14934280--14934318 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
14934270 AAACAACAAA
*
14934280 AAAAAGGAAAAAAAAG
1 AAAAATGAAAAAAAAG
*
14934296 AGAAATGAAAAGAAAAG
1 AAAAATGAAAA-AAAAG
14934313 AAAAAT
1 AAAAAT
14934319 AGTTATGACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (16 bp):
AAAAATGAAAAAAAAG
Found at i:14935188 original size:19 final size:20
Alignment explanation
Indices: 14935166--14935207 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
14935156 AAAAAAGCCA
*
14935166 AAAAATAAAGAA-AAAAAAG
1 AAAAAGAAAGAACAAAAAAG
*
14935185 AAAAAGAAAGAACAAAATAG
1 AAAAAGAAAGAACAAAAAAG
14935205 AAA
1 AAA
14935208 TTAAATGTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.81, C:0.02, G:0.12, T:0.05
Consensus pattern (20 bp):
AAAAAGAAAGAACAAAAAAG
Found at i:14935815 original size:22 final size:23
Alignment explanation
Indices: 14935787--14935845 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
14935777 ACGTAATCCT
14935787 AAATTAGTTAGCA-TTTAAACCC
1 AAATTAGTTAGCACTTTAAACCC
* * *
14935809 AAATTAGCTAGCACTTTAAGCCT
1 AAATTAGTTAGCACTTTAAACCC
*
14935832 AAATTAGTTGGCAC
1 AAATTAGTTAGCAC
14935846 ATAAAGTCTA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
22 12 0.39
23 19 0.61
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.31
Consensus pattern (23 bp):
AAATTAGTTAGCACTTTAAACCC
Found at i:14935845 original size:23 final size:23
Alignment explanation
Indices: 14935784--14935838 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
14935774 GGCACGTAAT
* *
14935784 CCTAAATTAGTTAGCA-TTTAAA
1 CCTAAATTAGCTAGCACTTTAAG
*
14935806 CCCAAATTAGCTAGCACTTTAAG
1 CCTAAATTAGCTAGCACTTTAAG
14935829 CCTAAATTAG
1 CCTAAATTAG
14935839 TTGGCACATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (23 bp):
CCTAAATTAGCTAGCACTTTAAG
Found at i:14935867 original size:24 final size:23
Alignment explanation
Indices: 14935809--14935868 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
14935799 ATTTAAACCC
* * *
14935809 AAATTAGCTAGCACTTTAAGCCT
1 AAATTAGCTGGCACATAAAGCCT
* *
14935832 AAATTAGTTGGCACATAAAGTCT
1 AAATTAGCTGGCACATAAAGCCT
14935855 AATATTAGCTGGCA
1 AA-ATTAGCTGGCA
14935869 TCGAAAGCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 20 0.67
24 10 0.33
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (23 bp):
AAATTAGCTGGCACATAAAGCCT
Found at i:14935905 original size:22 final size:22
Alignment explanation
Indices: 14935877--14935968 Score: 62
Period size: 22 Copynumber: 4.2 Consensus size: 22
14935867 CATCGAAAGC
14935877 CATAAGCCTAGATTAGATGGCA
1 CATAAGCCTAGATTAGATGGCA
* * * *
14935899 CATAAG-CTCAGTTTAGCTAGTA
1 CATAAGCCT-AGATTAGATGGCA
* * *
14935921 TAGAAGCCTAGTTTA-ACTGGCA
1 CATAAGCCTAGATTAGA-TGGCA
* * *
14935943 TAAAAGCCTAGATTAGTTGGCA
1 CATAAGCCTAGATTAGATGGCA
14935965 CATA
1 CATA
14935969 TGCTTGGATT
Statistics
Matches: 52, Mismatches: 14, Indels: 8
0.70 0.19 0.11
Matches are distributed among these distances:
21 2 0.04
22 48 0.92
23 2 0.04
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (22 bp):
CATAAGCCTAGATTAGATGGCA
Found at i:14936514 original size:96 final size:96
Alignment explanation
Indices: 14936169--14936804 Score: 478
Period size: 97 Copynumber: 6.6 Consensus size: 96
14936159 AATTTAATTA
* * * * * *
14936169 GCACCAAAGAAAGATTTTAAGTCTAGATTATTTCGCACACCATAAAAAGATTTTAAGCCTAGCTT
1 GCACTAAAGAAAGA-TTTAAGCCTAGATTATCTAGCACACCATGAAAAGATTTTAAGCCCAGCTT
* ** * *
14936234 AATTGGCACTTAAACTTAAACCCAGTTTAACTG
65 AGTTGGCAC-CCAACTTAAGCCCAGTTTAACAG
* * * * * * *
14936267 GCCCCAAAAAAAGATTTAAGCCCAGATTATCT-GACACACTATGAAAAAATTTTAAGCACAGCTT
1 GCACTAAAGAAAGATTTAAGCCTAGATTATCTAG-CACACCATGAAAAGATTTTAAGCCCAGCTT
* * * **
14936331 AGTTGACACTCAAACTTAAGCTCAGTTTAATTG
65 AGTTGGCAC-CCAACTTAAGCCCAGTTTAACAG
* * * * * * *
14936364 GAACTAAAAAAAAATTTAAG-CTCAGATTATCTAACACAGCAAGAAAAAATTTTAAGCCCAGCTT
1 GCACTAAAGAAAGATTTAAGCCT-AGATTATCTAGCACACCATGAAAAGATTTTAAGCCCAGCTT
*
14936428 AGTTGGCACCCAACTTAAACCCAGTTTAACAG
65 AGTTGGCACCCAACTTAAGCCCAGTTTAACAG
* * * * * *
14936460 GCACTAAAGAAAGATTTAAGCCTAAATTA-CTTGGCACACCATTAAAAGAGTTTAAGCCTAACTT
1 GCACTAAAGAAAGATTTAAGCCTAGATTATC-TAGCACACCATGAAAAGATTTTAAGCCCAGCTT
** **
14936524 AACTGGCACCCAAAGATAAGCCTC-GTTTAACTA-
65 AGTTGGCACCC-AACTTAAGCC-CAGTTTAAC-AG
* * * * * * * *
14936557 GCATTAAAGAAATATGTAAGCCCATATTATCTAGCACACCAT-AAAAAATTTTAAGTCCAACTTA
1 GCACTAAAGAAAGATTTAAGCCTAGATTATCTAGCACACCATGAAAAGATTTTAAGCCCAGCTTA
** * * * * *
14936621 GTTGATACCCAAATTTAGGCTCAGTTTATCTG
66 GTTGGCACCC-AACTTAAGCCCAGTTTAACAG
* * * * *
14936653 GCACTAAAGAAATATTTAAGTCTAGATTATATGGCACACCATGAAAAGATTTTAAGCTCAGCTTA
1 GCACTAAAGAAAGATTTAAGCCTAGATTATCTAGCACACCATGAAAAGATTTTAAGCCCAGCTTA
* * * *
14936718 GCTAGCACTCAAACTTAAGCCTAGTTTAACTA-
66 GTTGGCAC-CCAACTTAAGCCCAGTTTAAC-AG
* * * * *
14936750 GCACCAATGAAA-TTTTAAGCCTAAATTATCTAGCATACCATGAAAAGATTTTAAG
1 GCACTAAAGAAAGATTTAAGCCTAGATTATCTAGCACACCATGAAAAGATTTTAAG
14936805 TCCAATTTAG
Statistics
Matches: 424, Mismatches: 100, Indels: 30
0.77 0.18 0.05
Matches are distributed among these distances:
95 2 0.00
96 184 0.43
97 222 0.52
98 16 0.04
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (96 bp):
GCACTAAAGAAAGATTTAAGCCTAGATTATCTAGCACACCATGAAAAGATTTTAAGCCCAGCTTA
GTTGGCACCCAACTTAAGCCCAGTTTAACAG
Found at i:14936588 original size:193 final size:193
Alignment explanation
Indices: 14936161--14936841 Score: 600
Period size: 193 Copynumber: 3.5 Consensus size: 193
14936151 GTAAACCTAA
* * * * * * * * * *
14936161 TTTAATTAGCACCAAAGAAAGATTTTAAGTCTAGATTATTTCGCACACCATAAAAAGATTTTAAG
1 TTTAACTAGCACTAAAGAAATA-TTTAAGCCCAAATTATCTAGCACACAAGAAAAA-ATTTTAAG
* * * * ** * * * *
14936226 CCTAGCTTAATTGGCACTTAAACTTAAACCCAGTTTAACTGGCCCCAAAAAAAGATTTAAGCCCA
64 CCCAACTTAGTTGACACCCAAACTTAAACCCAGTTTAACTGGCACTAAAGAAAGATTTAAGCCTA
* * * * * *
14936291 GATTATCTGACACACTATGAAAAAATTTTAAGCAC-AGCTTAGTTGACACTCAAACTTAAG-CTC
129 GATTATATGGCACACCATGAAAAGATTTTAAGC-CTAGCTTAGCTGGCACTCAAACTTAAGCCTC
14936354 AG
193 -G
* * * * * * * *
14936356 TTTAATTGGAACTAAAAAAAAATTTAAGCTCAGATTATCTAACACAGCAAGAAAAAATTTTAAGC
1 TTTAACTAGCACTAAAGAAATATTTAAGCCCAAATTATCTAGCACA-CAAGAAAAAATTTTAAGC
* * * *
14936421 CCAGCTTAGTTGGCACCC-AACTTAAACCCAGTTTAACAGGCACTAAAGAAAGATTTAAGCCTAA
65 CCAACTTAGTTGACACCCAAACTTAAACCCAGTTTAACTGGCACTAAAGAAAGATTTAAGCCTAG
* * * * * **
14936485 ATTACT-TGGCACACCATTAAAAGAGTTTAAGCCTAACTTAACTGGCACCCAAAGATAAGCCTCG
130 ATTA-TATGGCACACCATGAAAAGATTTTAAGCCTAGCTTAGCTGGCACTCAAACTTAAGCCTCG
* * * * * *
14936549 TTTAACTAGCATTAAAGAAATATGTAAGCCCATATTATCTAGCACACCATAAAAAATTTTAAGTC
1 TTTAACTAGCACTAAAGAAATATTTAAGCCCAAATTATCTAGCACACAAGAAAAAATTTTAAGCC
* * ** * * * *
14936614 CAACTTAGTTGATACCCAAATTTAGGCTCAGTTTATCTGGCACTAAAGAAATATTTAAGTCTAGA
66 CAACTTAGTTGACACCCAAACTTAAACCCAGTTTAACTGGCACTAAAGAAAGATTTAAGCCTAGA
* *
14936679 TTATATGGCACACCATGAAAAGATTTTAAG-CTCAGCTTAGCTAGCACTCAAACTTAAGCCTAG
131 TTATATGGCACACCATGAAAAGATTTTAAGCCT-AGCTTAGCTGGCACTCAAACTTAAGCCTCG
* * * * * * *
14936742 TTTAACTAGCACCAATGAAAT-TTTAAGCCTAAATTATCTAGCATACCATGAAAAGATTTTAAGT
1 TTTAACTAGCACTAAAGAAATATTTAAGCCCAAATTATCTAGCACA-CAAGAAAAAATTTTAAGC
* * * *
14936806 CCAATTTAGCTGACACCCAAATTTAAACCCAATTTA
65 CCAACTTAGTTGACACCCAAACTTAAACCCAGTTTA
14936842 TTTAGCAGCA
Statistics
Matches: 391, Mismatches: 87, Indels: 18
0.79 0.18 0.04
Matches are distributed among these distances:
192 54 0.14
193 268 0.69
194 45 0.12
195 24 0.06
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (193 bp):
TTTAACTAGCACTAAAGAAATATTTAAGCCCAAATTATCTAGCACACAAGAAAAAATTTTAAGCC
CAACTTAGTTGACACCCAAACTTAAACCCAGTTTAACTGGCACTAAAGAAAGATTTAAGCCTAGA
TTATATGGCACACCATGAAAAGATTTTAAGCCTAGCTTAGCTGGCACTCAAACTTAAGCCTCG
Found at i:14936874 original size:96 final size:95
Alignment explanation
Indices: 14936182--14936906 Score: 339
Period size: 96 Copynumber: 7.5 Consensus size: 95
14936172 CCAAAGAAAG
* * * * * * ** * **
14936182 ATTTTAAGTCTAGATTATTTCGCACACCATAAAAAGATTTTAAG-CCTAGCTTAATTGGCACTTA
1 ATTTTAAGCCCAGATTATCTAGCACACCATGAAAAGATTTTAAGTCC-AACTTAGCTGACACCCA
* * * * * *
14936246 AACTTAAACCCAGTTTAACTGGCCCCAAAAAA
65 AATTTAAGCCCAGTTTATCTAG-CACAATAAA
* * * * * *
14936278 AGATTTAAGCCCAGATTATCT-GACACACTATGAAAAAATTTTAAG-CACAGCTTAGTTGACACT
1 A-TTTTAAGCCCAGATTATCTAG-CACACCATGAAAAGATTTTAAGTC-CAACTTAGCTGACACC
* * * * *
14936341 CAAACTTAAGCTCAGTTTAAT-TGGAACTAAAAAAA
63 CAAATTTAAGCCCAGTTT-ATCTAGCAC--AATAAA
* * * * * * * * * *
14936376 AATTTAAGCTCAGATTATCTAACACAGCAAGAAAAAATTTTAAGCCCAGCTTAGTTGGCACCC-A
1 ATTTTAAGCCCAGATTATCTAGCACACCATGAAAAGATTTTAAGTCCAACTTAGCTGACACCCAA
* * *
14936440 ACTTAAACCCAGTTTAAC-AGGCACTAA-AGAA
66 ATTTAAGCCCAGTTTATCTA-GCAC-AATA-AA
* * * * * * * *
14936471 AGATTTAAGCCTAAATTA-CTTGGCACACCATTAAAAGAGTTTAAG-CCTAACTTAACTGGCACC
1 A-TTTTAAGCCCAGATTATC-TAGCACACCATGAAAAGATTTTAAGTCC-AACTTAGCTGACACC
** * *
14936534 CAAAGATAAGCCTC-GTTTAACTAGCATTAA-AGAA
63 CAAATTTAAGCC-CAGTTTATCTAGCA-CAATA-AA
* * * * *
14936568 ATATGTAAGCCCATATTATCTAGCACACCAT-AAAAAATTTTAAGTCCAACTTAGTTGATACCCA
1 AT-TTTAAGCCCAGATTATCTAGCACACCATGAAAAGATTTTAAGTCCAACTTAGCTGACACCCA
* * *
14936632 AATTTAGGCTCAGTTTATCTGGCACTAA-AGAA
65 AATTTAAGCCCAGTTTATCTAGCAC-AATA-AA
* * * * * *
14936664 ATATTTAAGTCTAGATTATATGGCACACCATGAAAAGATTTTAAG-CTCAGCTTAGCT-AGCACT
1 AT-TTTAAGCCCAGATTATCTAGCACACCATGAAAAGATTTTAAGTC-CAACTTAGCTGA-CACC
* * * *
14936727 CAAACTTAAGCCTAGTTTAACTAGCACCAATGAA
63 CAAATTTAAGCCCAGTTTATCTAGCA-CAATAAA
* * * *
14936761 ATTTTAAGCCTAAATTATCTAGCATACCATGAAAAGATTTTAAGTCCAATTTAGCTGACACCCAA
1 ATTTTAAGCCCAGATTATCTAGCACACCATGAAAAGATTTTAAGTCCAACTTAGCTGACACCCAA
* * *
14936826 ATTTAAACCCAATTTATTTAGCAGCAATAAA
66 ATTTAAGCCCAGTTTATCTAGCA-CAATAAA
* * ** * * *
14936857 ATTTTCAA-CCCAGATTATTTGGTGCACCATGAAAAGGTTGTAAGCCCAAC
1 ATTTT-AAGCCCAGATTATCTAGCACACCATGAAAAGATTTTAAGTCCAAC
14936907 CTAGTAGATA
Statistics
Matches: 490, Mismatches: 108, Indels: 62
0.74 0.16 0.09
Matches are distributed among these distances:
94 1 0.00
95 10 0.02
96 247 0.50
97 218 0.44
98 14 0.03
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (95 bp):
ATTTTAAGCCCAGATTATCTAGCACACCATGAAAAGATTTTAAGTCCAACTTAGCTGACACCCAA
ATTTAAGCCCAGTTTATCTAGCACAATAAA
Found at i:14937258 original size:71 final size:71
Alignment explanation
Indices: 14937165--14937333 Score: 209
Period size: 71 Copynumber: 2.4 Consensus size: 71
14937155 GCTCAGTCCT
*
14937165 GATCA-TTTTTATTTCTTAACTTACGATT-TAATCTTAGTCATCCTTTATTTTTCAGCTTGTGGT
1 GATCATTTTTTATTT-TTGACTTACGATTGTAATCTTAGTCATCCTTTATTTTTCA-CTTGTGGT
14937228 GTTATCTC
64 GTTATCTC
** * * *
14937236 GATCATTTTTTATTTTTGACTTAC-ATTGTTGTCTTGGTCATTCTTTATTTTTGACTTGTGGTGT
1 GATCATTTTTTATTTTTGACTTACGATTGTAATCTTAGTCATCCTTTATTTTTCACTTGTGGTGT
*
14937300 TATTTC
66 TATCTC
* *
14937306 GATCGTTCTTTATTTTTTGACTTACGAT
1 GATCATTTTTTA-TTTTTGACTTACGAT
14937334 GTTATCCCGA
Statistics
Matches: 85, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
70 28 0.33
71 46 0.54
72 11 0.13
ACGTcount: A:0.17, C:0.14, G:0.14, T:0.55
Consensus pattern (71 bp):
GATCATTTTTTATTTTTGACTTACGATTGTAATCTTAGTCATCCTTTATTTTTCACTTGTGGTGT
TATCTC
Found at i:14937315 original size:35 final size:35
Alignment explanation
Indices: 14937202--14937403 Score: 153
Period size: 35 Copynumber: 5.8 Consensus size: 35
14937192 TTAATCTTAG
* * * * *
14937202 TCATCCTTTATTTTTCAGCTTGTGGTGTTATCTCGA
1 TCATTCTTTATTTTTGA-CTTATGATGTTATTTCGA
* * * *
14937238 TCATTTTTTATTTTTGACTTA-CATTGTTGTCTT-GG
1 TCATTCTTTATTTTTGACTTATGA-TGTTAT-TTCGA
* *
14937273 TCATTCTTTATTTTTGACTTGTGGTGTTATTTCGA
1 TCATTCTTTATTTTTGACTTATGATGTTATTTCGA
* * **
14937308 TCGTTCTTTATTTTTTGACTTACGATGTTATCCCGA
1 TCATTCTTTA-TTTTTGACTTATGATGTTATTTCGA
*
14937344 TCATT-TTT-TTTTT-ACTTATGATGTTGTTTCGA
1 TCATTCTTTATTTTTGACTTATGATGTTATTTCGA
** *
14937376 TTGTTCTTTATTTTTTGACTTGTGATGT
1 TCATTCTTTA-TTTTTGACTTATGATGT
14937404 CGTCTCTGTC
Statistics
Matches: 128, Mismatches: 29, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
32 18 0.14
33 8 0.06
34 2 0.02
35 51 0.40
36 49 0.38
ACGTcount: A:0.14, C:0.13, G:0.15, T:0.57
Consensus pattern (35 bp):
TCATTCTTTATTTTTGACTTATGATGTTATTTCGA
Found at i:14937402 original size:36 final size:36
Alignment explanation
Indices: 14937276--14937403 Score: 131
Period size: 36 Copynumber: 3.7 Consensus size: 36
14937266 GTCTTGGTCA
* * *
14937276 TTCTTTA-TTTTTGACTTGTGGTGTTATTTCGATCG
1 TTCTTTATTTTTTGACTTATGATGTTATTTCGATTG
* ** *
14937311 TTCTTTATTTTTTGACTTACGATGTTATCCCGA-TC
1 TTCTTTATTTTTTGACTTATGATGTTATTTCGATTG
* *
14937346 AT-TTT-TTTTTT-ACTTATGATGTTGTTTCGATTG
1 TTCTTTATTTTTTGACTTATGATGTTATTTCGATTG
*
14937379 TTCTTTATTTTTTGACTTGTGATGT
1 TTCTTTATTTTTTGACTTATGATGT
14937404 CGTCTCTGTC
Statistics
Matches: 73, Mismatches: 15, Indels: 9
0.75 0.15 0.09
Matches are distributed among these distances:
32 15 0.21
33 8 0.11
34 6 0.08
35 14 0.19
36 30 0.41
ACGTcount: A:0.14, C:0.12, G:0.16, T:0.59
Consensus pattern (36 bp):
TTCTTTATTTTTTGACTTATGATGTTATTTCGATTG
Found at i:14937403 original size:68 final size:71
Alignment explanation
Indices: 14937202--14937396 Score: 202
Period size: 71 Copynumber: 2.8 Consensus size: 71
14937192 TTAATCTTAG
* * * * * * *
14937202 TCATCCTTTATTTTTCAGCTTGTGGTGTTATCTCGATCATTTTTTA-TTTTTGACTTAC-ATTGT
1 TCATTCTTTATTTTTGA-CTTATGATGTTATTTCGATCGTTCTTTATTTTTTGACTTACGA-TGT
* ** *
14937265 TGTCTTGG
64 TATCCCGA
* *
14937273 TCATTCTTTATTTTTGACTTGTGGTGTTATTTCGATCGTTCTTTATTTTTTGACTTACGATGTTA
1 TCATTCTTTATTTTTGACTTATGATGTTATTTCGATCGTTCTTTATTTTTTGACTTACGATGTTA
14937338 TCCCGA
66 TCCCGA
* *
14937344 TCATT-TTT-TTTTT-ACTTATGATGTTGTTTCGATTGTTCTTTATTTTTTGACTT
1 TCATTCTTTATTTTTGACTTATGATGTTATTTCGATCGTTCTTTATTTTTTGACTT
14937397 GTGATGTCGT
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
68 36 0.33
69 5 0.05
70 28 0.26
71 39 0.36
72 1 0.01
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57
Consensus pattern (71 bp):
TCATTCTTTATTTTTGACTTATGATGTTATTTCGATCGTTCTTTATTTTTTGACTTACGATGTTA
TCCCGA
Found at i:14937637 original size:107 final size:108
Alignment explanation
Indices: 14937442--14937642 Score: 255
Period size: 107 Copynumber: 1.9 Consensus size: 108
14937432 TATGGTGTTG
* *
14937442 TCCCGATCATTTTTTATTACCTGACTTACAGTGTCATCCCGGTTGTTCTTTATTTTTCAAGTCGT
1 TCCCGATCATTTTTTATTACCTGACTTACAGTGTCATCCCAGTTGTTCTTTATTTTTCAACTCGT
** * *
14937507 GGTGTCATTTCGATTATTCTTTATTACTTGACTTGTAGGTTCA
66 GGTGTCATCCCAATTATTCTTTATCACTTGACTTGTAGGTTCA
*** * * *
14937550 TCCCGATCATTTTTTATTTTTTGACTTAC-GATGTCAT-TCAGTTGTTTTTTA-TTTTCTAACTT
1 TCCCGATCATTTTTTATTACCTGACTTACAG-TGTCATCCCAGTTGTTCTTTATTTTTC-AACTC
14937612 GTGGTGTCATCCCAATTATTCTTTATCACTT
64 GTGGTGTCATCCCAATTATTCTTTATCACTT
14937643 AACTCGTTGT
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
106 5 0.06
107 42 0.53
108 32 0.41
ACGTcount: A:0.18, C:0.19, G:0.13, T:0.50
Consensus pattern (108 bp):
TCCCGATCATTTTTTATTACCTGACTTACAGTGTCATCCCAGTTGTTCTTTATTTTTCAACTCGT
GGTGTCATCCCAATTATTCTTTATCACTTGACTTGTAGGTTCA
Found at i:14937694 original size:8 final size:8
Alignment explanation
Indices: 14937668--14937762 Score: 54
Period size: 8 Copynumber: 12.1 Consensus size: 8
14937658 CTCGAACCTT
*
14937668 AAAACTAA
1 AAAAATAA
*
14937676 ACAAA-AA
1 AAAAATAA
14937683 AAAAAT-A
1 AAAAATAA
14937690 AAAAATAA
1 AAAAATAA
*
14937698 AACAA-AA
1 AAAAATAA
*
14937705 AAAACTAA
1 AAAAATAA
* *
14937713 ATAGAACAA
1 A-AAAATAA
14937722 AAAAACTAA
1 AAAAA-TAA
*
14937731 AAAACTAA
1 AAAAATAA
**
14937739 AAAAA-CC
1 AAAAATAA
14937746 AAAAATAA
1 AAAAATAA
*
14937754 ATAAATAA
1 AAAAATAA
14937762 A
1 A
14937763 GAAACGAAAG
Statistics
Matches: 63, Mismatches: 18, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
7 23 0.37
8 29 0.46
9 11 0.17
ACGTcount: A:0.79, C:0.09, G:0.01, T:0.11
Consensus pattern (8 bp):
AAAAATAA
Found at i:14937740 original size:41 final size:37
Alignment explanation
Indices: 14937668--14937758 Score: 105
Period size: 40 Copynumber: 2.4 Consensus size: 37
14937658 CTCGAACCTT
*
14937668 AAAACTAAACAAAAAAAAAATAAAAAATAAAACAAA-A
1 AAAACTAAATAAAAAAAAAATAAAAAATAAAA-AAACA
14937705 AAAACTAAATAGAACAAAAAAACTAAAAAACTAAAAAAACCA
1 AAAACTAAATA-AA-AAAAAAA-TAAAAAA-TAAAAAAA-CA
14937747 AAAA-TAAATAAA
1 AAAACTAAATAAA
14937759 TAAAGAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
37 10 0.21
38 2 0.04
39 7 0.15
40 12 0.26
41 11 0.23
42 5 0.11
ACGTcount: A:0.79, C:0.10, G:0.01, T:0.10
Consensus pattern (37 bp):
AAAACTAAATAAAAAAAAAATAAAAAATAAAAAAACA
Found at i:14940439 original size:14 final size:14
Alignment explanation
Indices: 14940413--14940454 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
14940403 CCGAAATTTT
14940413 AAATTGAAACCCTA
1 AAATTGAAACCCTA
*
14940427 AAATT-AAAGCCCTT
1 AAATTGAAA-CCCTA
14940441 AAATTGAAACCCTA
1 AAATTGAAACCCTA
14940455 TACCTGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 3 0.12
14 18 0.75
15 3 0.12
ACGTcount: A:0.48, C:0.21, G:0.07, T:0.24
Consensus pattern (14 bp):
AAATTGAAACCCTA
Found at i:14941904 original size:15 final size:15
Alignment explanation
Indices: 14941872--14941911 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
14941862 TATTTTTTAG
*
14941872 ATATTTTCAAAATGTA
1 ATATTTT-AAAATATA
14941888 ATATTTTAAAATATA
1 ATATTTTAAAATATA
14941903 ATAATTTTA
1 AT-ATTTTA
14941912 TTTACTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (15 bp):
ATATTTTAAAATATA
Found at i:14941994 original size:25 final size:25
Alignment explanation
Indices: 14941959--14942011 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 25
14941949 CTGGTTATAG
14941959 AAAAATATTTTTA-TTTTTATTTTT
1 AAAAATATTTTTATTTTTTATTTTT
14941983 AAAAATATTTTTTATTTTTTATTTTT
1 AAAAATA-TTTTTATTTTTTATTTTT
14942009 AAA
1 AAA
14942012 TTTTTGAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 7 0.26
25 6 0.22
26 14 0.52
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (25 bp):
AAAAATATTTTTATTTTTTATTTTT
Found at i:14943216 original size:13 final size:13
Alignment explanation
Indices: 14943198--14943237 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
14943188 CTTGAAATAA
14943198 AAAAAAATTATTT
1 AAAAAAATTATTT
14943211 AAAAAAATTATTTT
1 AAAAAAATTA-TTT
*
14943225 AATAAAAAATATT
1 AA-AAAAATTATT
14943238 GAATAAGTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 10 0.42
14 7 0.29
15 7 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
AAAAAAATTATTT
Found at i:14949869 original size:19 final size:20
Alignment explanation
Indices: 14949836--14949877 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
14949826 CCACATTTAA
*
14949836 TTTCTATTTTGTTCTTTCTT
1 TTTCTATTTTGTTCTTTATT
*
14949856 TTTCT-TTTTTTTCTTTATT
1 TTTCTATTTTGTTCTTTATT
14949875 TTT
1 TTT
14949878 TGGCTTTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.05, C:0.12, G:0.02, T:0.81
Consensus pattern (20 bp):
TTTCTATTTTGTTCTTTATT
Found at i:14963349 original size:46 final size:46
Alignment explanation
Indices: 14963282--14963374 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
14963272 AAAGCAGAAG
14963282 AGCCAATAATCAAAAACTGAAATTGATCTGAGCTTGCAACAAAGAC
1 AGCCAATAATCAAAAACTGAAATTGATCTGAGCTTGCAACAAAGAC
*
14963328 AGCCAATAATCAAAAACTGAAATTGATCTGAGCTTGCAGCAAAGAC
1 AGCCAATAATCAAAAACTGAAATTGATCTGAGCTTGCAACAAAGAC
14963374 A
1 A
14963375 TATACCACTT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.45, C:0.19, G:0.16, T:0.19
Consensus pattern (46 bp):
AGCCAATAATCAAAAACTGAAATTGATCTGAGCTTGCAACAAAGAC
Found at i:14963910 original size:2 final size:2
Alignment explanation
Indices: 14963903--14963930 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
14963893 TATGTTACTG
14963903 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14963931 ATGCTGTCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:14965097 original size:12 final size:12
Alignment explanation
Indices: 14965080--14965105 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14965070 CTATTTAATA
14965080 ATAAAAAGAATT
1 ATAAAAAGAATT
14965092 ATAAAAAGAATT
1 ATAAAAAGAATT
14965104 AT
1 AT
14965106 TTTATTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.08, T:0.27
Consensus pattern (12 bp):
ATAAAAAGAATT
Found at i:14965565 original size:67 final size:68
Alignment explanation
Indices: 14965491--14965627 Score: 161
Period size: 67 Copynumber: 2.0 Consensus size: 68
14965481 CTATTGATAA
* * * *
14965491 ATGATTAAACTTT-AGTAATATATTATGATTCCTTAATGAGTTTTAGTGATTGA-AAATATATAA
1 ATGATTAAA-TTTCAGTAACACATTATGATACCTTAATGAGTTTTAGTGATTGACAAAAATATAA
14965554 TTAT
65 TTAT
* ** * * *
14965558 ATGATTAAATTTCAGTCACACATTATGATAGTTTCATGAGTTTTATTGATTGACAAAAATATGAT
1 ATGATTAAATTTCAGTAACACATTATGATACCTTAATGAGTTTTAGTGATTGACAAAAATATAAT
14965623 TAT
66 TAT
14965626 AT
1 AT
14965628 TCTTAATGCG
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
66 3 0.05
67 41 0.71
68 14 0.24
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (68 bp):
ATGATTAAATTTCAGTAACACATTATGATACCTTAATGAGTTTTAGTGATTGACAAAAATATAAT
TAT
Found at i:14971470 original size:13 final size:13
Alignment explanation
Indices: 14971452--14971477 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14971442 TTTTTTATTA
14971452 AAATAATTTTTTT
1 AAATAATTTTTTT
14971465 AAATAATTTTTTT
1 AAATAATTTTTTT
14971478 TATTTCAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
AAATAATTTTTTT
Found at i:14971478 original size:14 final size:14
Alignment explanation
Indices: 14971437--14971479 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
14971427 CTACTTATTC
*
14971437 AATATTTTTTTATTAA
1 AATAATTTTTT-TT-A
14971453 AATAA-TTTTTTTA
1 AATAATTTTTTTTA
14971466 AATAATTTTTTTTA
1 AATAATTTTTTTTA
14971480 TTTCAAGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
13 6 0.24
14 10 0.40
15 5 0.20
16 4 0.16
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
AATAATTTTTTTTA
Found at i:14972135 original size:14 final size:14
Alignment explanation
Indices: 14972116--14972145 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
14972106 CCCAAAGGCT
14972116 CCCTTTGTCTGCAC
1 CCCTTTGTCTGCAC
14972130 CCCTTTGTCTGCAC
1 CCCTTTGTCTGCAC
14972144 CC
1 CC
14972146 TAAGAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.07, C:0.47, G:0.13, T:0.33
Consensus pattern (14 bp):
CCCTTTGTCTGCAC
Found at i:14972705 original size:25 final size:23
Alignment explanation
Indices: 14972677--14972727 Score: 84
Period size: 25 Copynumber: 2.1 Consensus size: 23
14972667 TTTTCAAAAA
14972677 TTTAAAAATAAAAATAAAAAATATT
1 TTTAAAAATAAAAAT--AAAATATT
14972702 TTTAAAAATAAAAATAAAATATT
1 TTTAAAAATAAAAATAAAATATT
14972725 TTT
1 TTT
14972728 CTATAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 11 0.42
25 15 0.58
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
TTTAAAAATAAAAATAAAATATT
Found at i:14972794 original size:16 final size:16
Alignment explanation
Indices: 14972775--14972812 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
14972765 AATTAGTAAA
*
14972775 TAAAATTATTATATTT
1 TAAAATTATTACATTT
14972791 TAAAA-TATTACATTT
1 TAAAATTATTACATTT
14972806 TGAAAAT
1 T-AAAAT
14972813 ATCTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (16 bp):
TAAAATTATTACATTT
Found at i:14972813 original size:16 final size:15
Alignment explanation
Indices: 14972775--14972814 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
14972765 AATTAGTAAA
*
14972775 TAAAATTATTATATTT
1 TAAAA-TATTACATTT
14972791 TAAAATATTACATTT
1 TAAAATATTACATTT
14972806 TGAAAATAT
1 T-AAAATAT
14972815 CTAAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (15 bp):
TAAAATATTACATTT
Found at i:14978315 original size:67 final size:67
Alignment explanation
Indices: 14978184--14978319 Score: 159
Period size: 67 Copynumber: 2.0 Consensus size: 67
14978174 TCGCATAAGA
* * *
14978184 ATATAATCATATTTTGTCAATCAATAAAACTCATGAAACTATCATAATGTGTGACTGAAATTTAA
1 ATATAATCATATTTTGTCAATCAATAAAACTCATGAAACAATCATAATATATGACTGAAATTTAA
14978249 TC
66 TC
* * * ** *
14978251 ATATAATTATATATTT-TCAATCACTAAAACTCATTAAGGAATCATAATATATTACT-AAAGTTT
1 ATATAATCATAT-TTTGTCAATCAATAAAACTCATGAAACAATCATAATATATGACTGAAA-TTT
14978314 AATC
64 AATC
14978318 AT
1 AT
14978320 TTATCAATAG
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
66 3 0.05
67 52 0.90
68 3 0.05
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.38
Consensus pattern (67 bp):
ATATAATCATATTTTGTCAATCAATAAAACTCATGAAACAATCATAATATATGACTGAAATTTAA
TC
Found at i:14980497 original size:46 final size:45
Alignment explanation
Indices: 14980431--14980522 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 45
14980421 AAGTGGTATA
14980431 TGTCTTTGCTGCAGCTCAGATCAATTTCAGTTTTTGATTATTGGC
1 TGTCTTTGCTGCAGCTCAGATCAATTTCAGTTTTTGATTATTGGC
* *
14980476 TGTCTTTGTTGCAAGCTCAGATCAGTTTCAGTTTTTGATTATTGGC
1 TGTCTTTGCTGC-AGCTCAGATCAATTTCAGTTTTTGATTATTGGC
14980522 T
1 T
14980523 CTTCTGCTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 11 0.25
46 33 0.75
ACGTcount: A:0.17, C:0.16, G:0.21, T:0.46
Consensus pattern (45 bp):
TGTCTTTGCTGCAGCTCAGATCAATTTCAGTTTTTGATTATTGGC
Found at i:14992516 original size:60 final size:61
Alignment explanation
Indices: 14992447--14992570 Score: 232
Period size: 61 Copynumber: 2.0 Consensus size: 61
14992437 TTTTTGAGAC
*
14992447 TATGTCAAGATATGTTTCA-TTTTTGTAGATGTTACTTTGGATGTGTTTGTTGGTTATTGT
1 TATGTCAAGATATGTTTCATTTTTTGTAGACGTTACTTTGGATGTGTTTGTTGGTTATTGT
14992507 TATGTCAAGATATGTTTCATTTTTTGTAGACGTTACTTTGGATGTGTTTGTTGGTTATTGT
1 TATGTCAAGATATGTTTCATTTTTTGTAGACGTTACTTTGGATGTGTTTGTTGGTTATTGT
14992568 TAT
1 TAT
14992571 CTTTTCTGCA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
60 19 0.31
61 43 0.69
ACGTcount: A:0.19, C:0.06, G:0.23, T:0.53
Consensus pattern (61 bp):
TATGTCAAGATATGTTTCATTTTTTGTAGACGTTACTTTGGATGTGTTTGTTGGTTATTGT
Found at i:14999495 original size:19 final size:20
Alignment explanation
Indices: 14999442--14999492 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
14999432 TAAATAAAAA
**
14999442 TAAAATAATAATTTTTTAAT
1 TAAAATAATAAAATTTTAAT
14999462 TAAAATAATAAAATTTT-AT
1 TAAAATAATAAAATTTTAAT
14999481 TAAAAT-ATAAAA
1 TAAAATAATAAAA
14999493 ATTAAATTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 6 0.21
19 8 0.28
20 15 0.52
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAAATAATAAAATTTTAAT
Found at i:14999501 original size:19 final size:19
Alignment explanation
Indices: 14999459--14999501 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
14999449 ATAATTTTTT
*
14999459 AATTAAAATAATAAAATTT
1 AATTAAAATAATAAAATTA
*
14999478 TATTAAAAT-ATAAAAATTA
1 AATTAAAATAAT-AAAATTA
14999497 AATTA
1 AATTA
14999502 GATTCAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 2 0.10
19 18 0.90
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AATTAAAATAATAAAATTA
Found at i:14999641 original size:22 final size:22
Alignment explanation
Indices: 14999598--14999642 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
14999588 ACAATAATTG
*
14999598 AATTAAATTTAAATTTTATATA
1 AATTAAATTTAAATATTATATA
14999620 AATTAAATTTAAATAATT-TATA
1 AATTAAATTTAAAT-ATTATATA
14999642 A
1 A
14999643 CTATTAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 19 0.90
23 2 0.10
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
AATTAAATTTAAATATTATATA
Found at i:15007397 original size:61 final size:61
Alignment explanation
Indices: 15007327--15007451 Score: 225
Period size: 62 Copynumber: 2.0 Consensus size: 61
15007317 TTTTTGAGAC
*
15007327 TATGTCAAGATATGTTTCA-TTTTTGTAGATGTTACTTTGGATGTGTTTGTTGGTTATCTGT
1 TATGTCAAGATATGTTTCATTTTTTGTAGACGTTACTTTGGATGTGTTTGTTGGTTAT-TGT
15007388 TATGTCAAGATATGTTTCATTTTTTGTAGACGTTACTTTGGATGTGTTTGTTGGTTATTGT
1 TATGTCAAGATATGTTTCATTTTTTGTAGACGTTACTTTGGATGTGTTTGTTGGTTATTGT
15007449 TAT
1 TAT
15007452 CTTTTCTGCA
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
61 25 0.40
62 37 0.60
ACGTcount: A:0.18, C:0.06, G:0.22, T:0.53
Consensus pattern (61 bp):
TATGTCAAGATATGTTTCATTTTTTGTAGACGTTACTTTGGATGTGTTTGTTGGTTATTGT
Found at i:15014211 original size:6 final size:6
Alignment explanation
Indices: 15014190--15014226 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
15014180 TTAGAATCGA
*
15014190 TTAAAT TTAATTT TTAAAT TTAAAT TTAAAT TTAAAT
1 TTAAAT TTAA-AT TTAAAT TTAAAT TTAAAT TTAAAT
15014227 AAATATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 23 0.82
7 5 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTAAAT
Found at i:15014386 original size:18 final size:20
Alignment explanation
Indices: 15014336--15014397 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 20
15014326 TAAATAAAAA
**
15014336 TAAAATAATAATTTTTTAAT
1 TAAAATAATAAAATTTTAAT
15014356 TAAAATAATAAAATTTT-AT
1 TAAAATAATAAAATTTTAAT
* *
15014375 TAAAAT-ATAAAAATTAAAT
1 TAAAATAATAAAATTTTAAT
15014394 TAAA
1 TAAA
15014398 TTCAAAAATT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
18 8 0.22
19 14 0.38
20 15 0.41
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
TAAAATAATAAAATTTTAAT
Found at i:15014617 original size:13 final size:13
Alignment explanation
Indices: 15014599--15014623 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15014589 TATATGAACA
15014599 ATGAGAAATGGAT
1 ATGAGAAATGGAT
15014612 ATGAGAAATGGA
1 ATGAGAAATGGA
15014624 CTTGACTGAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.32, T:0.20
Consensus pattern (13 bp):
ATGAGAAATGGAT
Found at i:15017718 original size:25 final size:25
Alignment explanation
Indices: 15017684--15017731 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
15017674 AAAGGAACAC
15017684 AAGAACAGTGTTTCTTTAAATTCCA
1 AAGAACAGTGTTTCTTTAAATTCCA
15017709 AAGAACAGTGTTTCTTTAAATTC
1 AAGAACAGTGTTTCTTTAAATTC
15017732 AACAATAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (25 bp):
AAGAACAGTGTTTCTTTAAATTCCA
Found at i:15019330 original size:27 final size:27
Alignment explanation
Indices: 15019295--15019347 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
15019285 AACAATAATT
*
15019295 TAAAGCCAAACCTAACCCAAAAATTGG
1 TAAAACCAAACCTAACCCAAAAATTGG
*
15019322 TAAAACCAAACCTAACTCAAAAATTG
1 TAAAACCAAACCTAACCCAAAAATTG
15019348 TCTCTCAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.51, C:0.25, G:0.08, T:0.17
Consensus pattern (27 bp):
TAAAACCAAACCTAACCCAAAAATTGG
Found at i:15023668 original size:2 final size:2
Alignment explanation
Indices: 15023661--15023688 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
15023651 TAAAAGGAAA
15023661 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG
15023689 CACCTGTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:15025028 original size:30 final size:27
Alignment explanation
Indices: 15024994--15025058 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
15024984 TTTATTAATT
* *
15024994 ATTAATTTATCAAAATTAAATCGATGATTA
1 ATTAATTAATC-AAATTAAATCAAT--TTA
*
15025024 ATTAATTAATCAAATTCAATCAATTTA
1 ATTAATTAATCAAATTAAATCAATTTA
15025051 ATTAATTA
1 ATTAATTA
15025059 TTCGATTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 11 0.34
29 11 0.34
30 10 0.31
ACGTcount: A:0.48, C:0.08, G:0.03, T:0.42
Consensus pattern (27 bp):
ATTAATTAATCAAATTAAATCAATTTA
Found at i:15028811 original size:13 final size:14
Alignment explanation
Indices: 15028793--15028821 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
15028783 ACTAACGGCG
15028793 TTTTT-CTTTTTTT
1 TTTTTCCTTTTTTT
15028806 TTTTTCCTTTTTTT
1 TTTTTCCTTTTTTT
15028820 TT
1 TT
15028822 ATAATTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (14 bp):
TTTTTCCTTTTTTT
Found at i:15034366 original size:32 final size:33
Alignment explanation
Indices: 15034291--15034376 Score: 95
Period size: 33 Copynumber: 2.6 Consensus size: 33
15034281 AAATATTTAC
*
15034291 ATTTTCTGAAAGAA-ATTTTTTGTTGTTTGGATG
1 ATTTTCTGAAA-AATATTTTTTGTTGTTCGGATG
* ** *
15034324 AATTAATGAAAAATATTTTTTGTTGTTCGG-TT
1 ATTTTCTGAAAAATATTTTTTGTTGTTCGGATG
*
15034356 ATTTTCTGAAAAATCTTTTTT
1 ATTTTCTGAAAAATATTTTTT
15034377 TTTCAAATAA
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
32 20 0.47
33 23 0.53
ACGTcount: A:0.28, C:0.05, G:0.15, T:0.52
Consensus pattern (33 bp):
ATTTTCTGAAAAATATTTTTTGTTGTTCGGATG
Found at i:15034430 original size:16 final size:15
Alignment explanation
Indices: 15034404--15034445 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
15034394 AAACTCTTAA
15034404 AATATTAAAAATTATTT
1 AATATT-AAAATTA-TT
*
15034421 ATTATTAAAATTATT
1 AATATTAAAATTATT
15034436 AATATTAAAA
1 AATATTAAAA
15034446 AATAATTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 11 0.48
16 7 0.30
17 5 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATATTAAAATTATT
Found at i:15034446 original size:16 final size:17
Alignment explanation
Indices: 15034404--15034482 Score: 72
Period size: 16 Copynumber: 4.6 Consensus size: 17
15034394 AAACTCTTAA
15034404 AATATTAAAAATTATTT
1 AATATTAAAAATTATTT
*
15034421 ATTATT-AAAATTA-TT
1 AATATTAAAAATTATTT
* *
15034436 AATATTAAAAAATAATT
1 AATATTAAAAATTATTT
* *
15034453 ATATTTTAATAATAATATTT
1 A-ATATTAA-AA-ATTATTT
15034473 AATATTAAAA
1 AATATTAAAA
15034483 TGTGATGTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
15 7 0.14
16 13 0.25
17 8 0.16
18 8 0.16
19 8 0.16
20 7 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
AATATTAAAAATTATTT
Found at i:15034559 original size:23 final size:23
Alignment explanation
Indices: 15034533--15034578 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
15034523 ATTATTCTTT
15034533 ATATTATTTATTAATATATTATA
1 ATATTATTTATTAATATATTATA
*
15034556 ATATTATTTATTAATATGTTATA
1 ATATTATTTATTAATATATTATA
15034579 TTAATAGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (23 bp):
ATATTATTTATTAATATATTATA
Found at i:15034654 original size:16 final size:15
Alignment explanation
Indices: 15034628--15034669 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
15034618 AAACTTTTAA
15034628 AATATTAAAAATTATTT
1 AATATT-AAAATTA-TT
*
15034645 ATTATTAAAATTATT
1 AATATTAAAATTATT
15034660 AATATTAAAA
1 AATATTAAAA
15034670 AATAATTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 11 0.48
16 7 0.30
17 5 0.22
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AATATTAAAATTATT
Found at i:15034670 original size:16 final size:17
Alignment explanation
Indices: 15034628--15034727 Score: 78
Period size: 19 Copynumber: 5.7 Consensus size: 17
15034618 AAACTTTTAA
15034628 AATATTAAAAATTATTT
1 AATATTAAAAATTATTT
*
15034645 ATTATT-AAAATTA-TT
1 AATATTAAAAATTATTT
* *
15034660 AATATTAAAAAATAATT
1 AATATTAAAAATTATTT
* *
15034677 ATATTTTAATAATAATATTT
1 A-ATATTAA-AA-ATTATTT
*
15034697 AATATTAAAATATGATGTT
1 AATATTAAAA-ATTAT-TT
*
15034716 AATATAAAAAAT
1 AATATTAAAAAT
15034728 ACTTAAAATA
Statistics
Matches: 68, Mismatches: 9, Indels: 11
0.77 0.10 0.12
Matches are distributed among these distances:
15 7 0.10
16 13 0.19
17 8 0.12
18 14 0.21
19 19 0.28
20 7 0.10
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
AATATTAAAAATTATTT
Found at i:15034678 original size:20 final size:19
Alignment explanation
Indices: 15034656--15034728 Score: 55
Period size: 17 Copynumber: 3.9 Consensus size: 19
15034646 TTATTAAAAT
15034656 TATTAATATTAAAAAAT-A
1 TATTAATATTAAAAAATAA
* *
15034674 -ATT-ATATTTTAATAATAA
1 TATTAATA-TTAAAAAATAA
* *
15034692 TATTTAATATTAAAATATGA
1 TA-TTAATATTAAAAAATAA
*
15034712 TGTTAATA-TAAAAAATA
1 TATTAATATTAAAAAATA
15034729 CTTAAAATAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
16 3 0.07
17 10 0.24
18 8 0.20
19 7 0.17
20 10 0.24
21 3 0.07
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
TATTAATATTAAAAAATAA
Found at i:15034773 original size:224 final size:224
Alignment explanation
Indices: 15034383--15034793 Score: 804
Period size: 224 Copynumber: 1.8 Consensus size: 224
15034373 TTTTTTTCAA
15034383 ATAATATTAATAAACTCTTAAAATATTAAAAATTATTTATTATTAAAATTATTAATATTAAAAAA
1 ATAATATTAATAAACTCTTAAAATATTAAAAATTATTTATTATTAAAATTATTAATATTAAAAAA
*
15034448 TAATTATATTTTAATAATAATATTTAATATTAAAATGTGATGTTAATATAAAAAATACTTAAAAT
66 TAATTATATTTTAATAATAATATTTAATATTAAAATATGATGTTAATATAAAAAATACTTAAAAT
15034513 AAAACTATTTATTATTCTTTATATTATTTATTAATATATTATAATATTATTTATTAATATGTTAT
131 AAAACTATTTATTATTCTTTATATTATTTATTAATATATTATAATATTATTTATTAATATGTTAT
15034578 ATTAATAGTATATTATTTATTAATATATT
196 ATTAATAGTATATTATTTATTAATATATT
*
15034607 ATAATATTAATAAACTTTTAAAATATTAAAAATTATTTATTATTAAAATTATTAATATTAAAAAA
1 ATAATATTAATAAACTCTTAAAATATTAAAAATTATTTATTATTAAAATTATTAATATTAAAAAA
15034672 TAATTATATTTTAATAATAATATTTAATATTAAAATATGATGTTAATATAAAAAATACTTAAAAT
66 TAATTATATTTTAATAATAATATTTAATATTAAAATATGATGTTAATATAAAAAATACTTAAAAT
15034737 AAAACTATTTATTATTCTTTATATTATTTATTAATATATTATAATATTATTTATTAA
131 AAAACTATTTATTATTCTTTATATTATTTATTAATATATTATAATATTATTTATTAA
15034794 AATTAATATA
Statistics
Matches: 185, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
224 185 1.00
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (224 bp):
ATAATATTAATAAACTCTTAAAATATTAAAAATTATTTATTATTAAAATTATTAATATTAAAAAA
TAATTATATTTTAATAATAATATTTAATATTAAAATATGATGTTAATATAAAAAATACTTAAAAT
AAAACTATTTATTATTCTTTATATTATTTATTAATATATTATAATATTATTTATTAATATGTTAT
ATTAATAGTATATTATTTATTAATATATT
Found at i:15034805 original size:29 final size:30
Alignment explanation
Indices: 15034766--15034850 Score: 88
Period size: 29 Copynumber: 2.9 Consensus size: 30
15034756 TATATTATTT
15034766 ATTAATATATTA-TAATATTATTTATTAAA
1 ATTAATATATTAGTAATATTATTTATTAAA
* *
15034795 ATTAATATATTAGTACTATT-TTTATTTATA
1 ATTAATATATTAGTAATATTATTTA-TTAAA
* *
15034825 A-TAATAT-TTATTAATATAATATTATT
1 ATTAATATATTAGTAATATTAT-TTATT
15034851 TATAAGTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
28 8 0.17
29 25 0.53
30 14 0.30
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (30 bp):
ATTAATATATTAGTAATATTATTTATTAAA
Found at i:15037125 original size:24 final size:24
Alignment explanation
Indices: 15037098--15037165 Score: 66
Period size: 24 Copynumber: 2.8 Consensus size: 24
15037088 TACAGATATG
15037098 ATTATTTATTTTAAATAGACAAAA
1 ATTATTTATTTTAAATAGACAAAA
* * * **
15037122 ATTATCTATTTTTTAACAG-TTAAA
1 ATTATTTA-TTTTAAATAGACAAAA
*
15037146 ATTATTTATTTTGAATAGAC
1 ATTATTTATTTTAAATAGAC
15037166 TTATCTCTTT
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
23 8 0.24
24 17 0.52
25 8 0.24
ACGTcount: A:0.41, C:0.06, G:0.06, T:0.47
Consensus pattern (24 bp):
ATTATTTATTTTAAATAGACAAAA
Found at i:15037176 original size:23 final size:23
Alignment explanation
Indices: 15037150--15037203 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
15037140 GTTAAAATTA
* *
15037150 TTTATTTTGAATAGACTTATCTC
1 TTTATTTTAAATAGACTTAACTC
* *
15037173 TTTATTGTAAATAGACTTAACTG
1 TTTATTTTAAATAGACTTAACTC
15037196 TTTATTTT
1 TTTATTTT
15037204 TATTTTTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.28, C:0.09, G:0.09, T:0.54
Consensus pattern (23 bp):
TTTATTTTAAATAGACTTAACTC
Found at i:15037324 original size:29 final size:29
Alignment explanation
Indices: 15037279--15037334 Score: 87
Period size: 29 Copynumber: 1.9 Consensus size: 29
15037269 CCCCTCATTA
*
15037279 ATAATCATTTAAGTTTTTG-ATATTTTATT
1 ATAATCAATTAA-TTTTTGAATATTTTATT
15037308 ATAATCAATTAATTTTTGAATATTTTA
1 ATAATCAATTAATTTTTGAATATTTTA
15037335 ATTCAAATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.36, C:0.04, G:0.05, T:0.55
Consensus pattern (29 bp):
ATAATCAATTAATTTTTGAATATTTTATT
Found at i:15038750 original size:34 final size:34
Alignment explanation
Indices: 15038707--15038774 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
15038697 CTGGACTTAG
15038707 TTTAACGGAATAAAGAAGCAGAATGTGATAAGAT
1 TTTAACGGAATAAAGAAGCAGAATGTGATAAGAT
*
15038741 TTTAACGGAATAAAGAAGTAGAATGTGATAAGAT
1 TTTAACGGAATAAAGAAGCAGAATGTGATAAGAT
15038775 AATTTCTTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.47, C:0.04, G:0.24, T:0.25
Consensus pattern (34 bp):
TTTAACGGAATAAAGAAGCAGAATGTGATAAGAT
Found at i:15051678 original size:27 final size:26
Alignment explanation
Indices: 15051633--15051683 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 26
15051623 AAATTTTATA
15051633 AATTATAAATCAATAACAAAATATGTC
1 AATTATAAATCAATAAC-AAATATGTC
*
15051660 AATTCATAAAT-AATTACAAATATG
1 AATT-ATAAATCAATAACAAATATG
15051684 ATGTTATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 7 0.32
27 9 0.41
28 6 0.27
ACGTcount: A:0.55, C:0.10, G:0.04, T:0.31
Consensus pattern (26 bp):
AATTATAAATCAATAACAAATATGTC
Found at i:15064211 original size:15 final size:15
Alignment explanation
Indices: 15064179--15064210 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
15064169 TGTTTTTATT
15064179 AAATTACTTTTAAAA
1 AAATTACTTTTAAAA
15064194 AAATTA-TTTTAAAA
1 AAATTACTTTTAAAA
15064208 AAA
1 AAA
15064211 ACTTCAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (15 bp):
AAATTACTTTTAAAA
Found at i:15069660 original size:2 final size:2
Alignment explanation
Indices: 15069655--15069683 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
15069645 ACACACAAAC
15069655 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15069684 GAGAGAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15072892 original size:27 final size:27
Alignment explanation
Indices: 15072841--15072894 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
15072831 AATCCAGAGC
* * *
15072841 ATTACCATGAGAAATCATATCCTAGCT
1 ATTACCATGAGAAACCACATACTAGCT
*
15072868 ATTACCATGAGAAACCACGTACTAGCT
1 ATTACCATGAGAAACCACATACTAGCT
15072895 CTACTGTAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (27 bp):
ATTACCATGAGAAACCACATACTAGCT
Found at i:15074250 original size:21 final size:20
Alignment explanation
Indices: 15074221--15074282 Score: 54
Period size: 21 Copynumber: 3.0 Consensus size: 20
15074211 TTTATTACTT
15074221 AATTAATTTTTTAATATTATA
1 AATT-ATTTTTTAATATTATA
*
15074242 AATATATTTTATTAAGA-TATA
1 AAT-TATTTT-TTAATATTATA
* *
15074263 AGTTAGTTTTTTAATTTTAT
1 AATTA-TTTTTTAATATTAT
15074283 TCATGAAGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
20 6 0.18
21 21 0.64
22 6 0.18
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (20 bp):
AATTATTTTTTAATATTATA
Found at i:15103780 original size:20 final size:21
Alignment explanation
Indices: 15103745--15103786 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
15103735 ATTAACTCAT
*
15103745 AAAAAATTTATAAATTTTTAA
1 AAAAAATTTATAAATTTATAA
*
15103766 AAAAAATTT-TGAATTTATAA
1 AAAAAATTTATAAATTTATAA
15103786 A
1 A
15103787 TCATTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
AAAAAATTTATAAATTTATAA
Found at i:15103781 original size:28 final size:31
Alignment explanation
Indices: 15103749--15103807 Score: 88
Period size: 28 Copynumber: 2.0 Consensus size: 31
15103739 ACTCATAAAA
15103749 AATTTATAAAT-TTT-TAAA-AAAAATTTTG
1 AATTTATAAATATTTATAAATAAAAATTTTG
15103777 AATTTATAAATCATTTATAAATAAAAATTTT
1 AATTTATAAAT-ATTTATAAATAAAAATTTT
15103808 TTTATGATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 11 0.41
30 3 0.11
31 4 0.15
32 9 0.33
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (31 bp):
AATTTATAAATATTTATAAATAAAAATTTTG
Found at i:15105507 original size:21 final size:21
Alignment explanation
Indices: 15105502--15105551 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
15105492 TTTTTATTTC
*
15105502 AGGGTTTGAGGTTTTGGTTTT
1 AGGGTTTAAGGTTTTGGTTTT
*
15105523 AGGGTTTAAGGTTTTGATTTT
1 AGGGTTTAAGGTTTTGGTTTT
*
15105544 AGGATTTA
1 AGGGTTTA
15105552 GAAGATTTAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.18, C:0.00, G:0.32, T:0.50
Consensus pattern (21 bp):
AGGGTTTAAGGTTTTGGTTTT
Found at i:15105594 original size:58 final size:59
Alignment explanation
Indices: 15105527--15105787 Score: 216
Period size: 58 Copynumber: 4.5 Consensus size: 59
15105517 GGTTTTAGGG
* * * *
15105527 TTTAAGGTTTTGATTTTAGGATTTAGAAGATTTACAGTTTTGATTTTAGGGTCAGAGG-
1 TTTAAGGTTTTGATTTTAGGGTTTAGAGGATTTAAAGTTTTGATTTTAGGGTTAGAGGA
* * * * ** *
15105585 TTTAGGGTTTT-AGTTTTAGGTTTTTGAGGATTTAGA-TTTTTTTTTTAGGATTTAGAGGA
1 TTTAAGGTTTTGA-TTTTAGGGTTTAGAGGATTTAAAGTTTTGATTTTAGG-GTTAGAGGA
* * *
15105644 TTTAGGGTTTTG-TTTTAGGGTTTA-AGGTTTTAAAGTTTTGATTTTAGGGTTTGAAGGA
1 TTTAAGGTTTTGATTTTAGGGTTTAGAGGATTTAAAGTTTTGATTTTAGGGTTAG-AGGA
* ** * * *
15105702 TTTAAGGTTTTAATTTTAGGGTTTA-AGG-TTCTAGGGTTTAG-TTTCAGGGTTTGGAGGA
1 TTTAAGGTTTTGATTTTAGGGTTTAGAGGATT-TAAAGTTTTGATTTTAGGG-TTAGAGGA
* *
15105760 TTTAAGATTTT-ATTTTAGGATTTAGAGG
1 TTTAAGGTTTTGATTTTAGGGTTTAGAGG
15105788 GTTTGGGGTT
Statistics
Matches: 167, Mismatches: 26, Indels: 20
0.78 0.12 0.09
Matches are distributed among these distances:
57 35 0.21
58 96 0.57
59 36 0.22
ACGTcount: A:0.23, C:0.02, G:0.27, T:0.49
Consensus pattern (59 bp):
TTTAAGGTTTTGATTTTAGGGTTTAGAGGATTTAAAGTTTTGATTTTAGGGTTAGAGGA
Found at i:15105624 original size:29 final size:28
Alignment explanation
Indices: 15105592--15105787 Score: 103
Period size: 29 Copynumber: 6.8 Consensus size: 28
15105582 AGGTTTAGGG
15105592 TTTTAGTTTTAGGTTTTTGAGGATTTAGA
1 TTTTAGTTTTAGG-TTTTGAGGATTTAGA
** * *
15105621 TTTTTTTTTTAGGATTTAGAGGATTTAGGG
1 TTTTAGTTTTAGG-TTTTGAGGATTTA-GA
* * * *
15105651 TTTT-GTTTTAGGGTTTAAGGTTTTAAA
1 TTTTAGTTTTAGGTTTTGAGGATTTAGA
* *
15105678 GTTTT-GATTTTAGGGTTTGAAGGATTTAAGG
1 -TTTTAG-TTTTAGGTTTTG-AGGATTT-AGA
* * * *
15105709 TTTTAATTTTAGGGTTTAAGG-TTCTAGG
1 TTTTAGTTTTAGGTTTTGAGGATT-TAGA
* * *
15105737 GTTTAGTTTCAGGGTTTGGAGGATTTAAGA
1 TTTTAGTTTTA-GGTTTTGAGGATTT-AGA
*
15105767 TTTTA-TTTTAGGATTTAGAGG
1 TTTTAGTTTTAGG-TTTTGAGG
15105788 GTTTGGGGTT
Statistics
Matches: 128, Mismatches: 28, Indels: 22
0.72 0.16 0.12
Matches are distributed among these distances:
28 29 0.23
29 64 0.50
30 34 0.27
31 1 0.01
ACGTcount: A:0.22, C:0.01, G:0.27, T:0.50
Consensus pattern (28 bp):
TTTTAGTTTTAGGTTTTGAGGATTTAGA
Found at i:15105666 original size:145 final size:145
Alignment explanation
Indices: 15105517--15105799 Score: 378
Period size: 145 Copynumber: 2.0 Consensus size: 145
15105507 TTGAGGTTTT
* * *
15105517 GGTTTTAGGGTTTAAGGTTTTGATTTTAGGATTTAGAA-GATTTACA-GTTTTGATTTTAGGG-T
1 GGTTTAAGGGTTTAAAGTTTTGATTTTAGGATTT-GAAGGATTTA-AGGTTTTAATTTTAGGGTT
* * * *
15105579 CAGAGGTT-TAGGGTTTTAGTTTTAGGTTTTTGAGGATTT-AGATTTTTTTTTTAGGATTTAGAG
64 CA-AGGTTCTAGGG-TTTAGTTTCAGGGTTTGGAGGATTTAAGA-TTTTATTTTAGGATTTAGAG
15105642 GATTTAGGGTTTTGTTTTAG
126 GATTTAGGGTTTTGTTTTAG
* * *
15105662 GGTTTAAGGTTTTAAAGTTTTGATTTTAGGGTTTGAAGGATTTAAGGTTTTAATTTTAGGGTTTA
1 GGTTTAAGGGTTTAAAGTTTTGATTTTAGGATTTGAAGGATTTAAGGTTTTAATTTTAGGGTTCA
*
15105727 AGGTTCTAGGGTTTAGTTTCAGGGTTTGGAGGATTTAAGATTTTATTTTAGGATTTAGAGGGTTT
66 AGGTTCTAGGGTTTAGTTTCAGGGTTTGGAGGATTTAAGATTTTATTTTAGGATTTAGAGGATTT
*
15105792 GGGGTTTT
131 AGGGTTTT
15105800 TTAATTTTAG
Statistics
Matches: 121, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
144 4 0.03
145 107 0.88
146 10 0.08
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.49
Consensus pattern (145 bp):
GGTTTAAGGGTTTAAAGTTTTGATTTTAGGATTTGAAGGATTTAAGGTTTTAATTTTAGGGTTCA
AGGTTCTAGGGTTTAGTTTCAGGGTTTGGAGGATTTAAGATTTTATTTTAGGATTTAGAGGATTT
AGGGTTTTGTTTTAG
Found at i:15105682 original size:87 final size:86
Alignment explanation
Indices: 15105512--15105787 Score: 228
Period size: 87 Copynumber: 3.2 Consensus size: 86
15105502 AGGGTTTGAG
* * * * **
15105512 GTTTT-GGTTTT-AGGGTTTAAGGTTTTGATTTTAGGATTTAGAAGATTTACAGTTTTGATTTTA
1 GTTTTAGGTTTTGAGGATTTAAGATTTTAATTTTAGGATTTAGAGGATTTAGGGTTTTG-TTTTA
* **
15105575 GGG-TCAGAGGTTTAGGGTTTTA
65 GGGTTTA-AGGTTTAAAGTTTTA
**
15105597 GTTTTAGGTTTTTGAGGATTT-AGATTTTTTTTTTAGGATTTAGAGGATTTAGGGTTTTGTTTTA
1 GTTTTAGG-TTTTGAGGATTTAAGATTTTAATTTTAGGATTTAGAGGATTTAGGGTTTTGTTTTA
15105661 GGGTTTAAGGTTTTAAAGTTTT-
65 GGGTTTAAGG-TTTAAAGTTTTA
* * * *
15105683 GATTTTAGGGTTTGAAGGATTTAAGGTTTTAATTTTAGGGTTTA-AGG-TTCTAGGGTTTAGTTT
1 G-TTTTAGGTTTTG-AGGATTTAAGATTTTAATTTTAGGATTTAGAGGATT-TAGGGTTTTGTTT
* *
15105746 CAGGGTTTGGAGGATTT-AAGATTTTA
63 TAGGGTTT-AAGG-TTTAAAG-TTTTA
*
15105772 -TTTTAGGATTTAGAGG
1 GTTTTAGG-TTTTGAGG
15105788 GTTTGGGGTT
Statistics
Matches: 157, Mismatches: 21, Indels: 24
0.78 0.10 0.12
Matches are distributed among these distances:
85 5 0.03
86 20 0.13
87 96 0.61
88 36 0.23
ACGTcount: A:0.22, C:0.01, G:0.28, T:0.49
Consensus pattern (86 bp):
GTTTTAGGTTTTGAGGATTTAAGATTTTAATTTTAGGATTTAGAGGATTTAGGGTTTTGTTTTAG
GGTTTAAGGTTTAAAGTTTTA
Found at i:15105952 original size:3 final size:3
Alignment explanation
Indices: 15105946--15105986 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
15105936 ATAATATCAA
15105946 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
15105987 AATTCTTCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:15107174 original size:11 final size:11
Alignment explanation
Indices: 15107144--15107187 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
15107134 TAGATGTGGT
15107144 TAGGGTAGGCTG
1 TAGGGT-GGCTG
15107156 TAAGGGTGGCTG
1 T-AGGGTGGCTG
**
15107168 TAGGGTGGCCA
1 TAGGGTGGCTG
15107179 TAGGGTGGC
1 TAGGGTGGC
15107188 GGCAAGGTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 17 0.59
12 7 0.24
13 5 0.17
ACGTcount: A:0.16, C:0.11, G:0.50, T:0.23
Consensus pattern (11 bp):
TAGGGTGGCTG
Found at i:15107353 original size:15 final size:17
Alignment explanation
Indices: 15107318--15107365 Score: 57
Period size: 16 Copynumber: 3.0 Consensus size: 17
15107308 TTGTTTTTTG
* *
15107318 TATTTTTATTATTGATA
1 TATTTTAATTATTAATA
15107335 TA-TTTAATTATTAAT-
1 TATTTTAATTATTAATA
15107350 TATTTTAA-TATTAATA
1 TATTTTAATTATTAATA
15107366 AACAGAACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 9 0.33
16 16 0.59
17 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (17 bp):
TATTTTAATTATTAATA
Found at i:15107598 original size:17 final size:16
Alignment explanation
Indices: 15107578--15107621 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
15107568 CATATTTTTT
15107578 AATTTATTTAAAACTAA
1 AATTTATTTAAAAC-AA
* * *
15107595 AATTAAATAAAAACAA
1 AATTTATTTAAAACAA
15107611 AATTTATTTAA
1 AATTTATTTAA
15107622 TAATATCACA
Statistics
Matches: 21, Mismatches: 6, Indels: 1
0.75 0.21 0.04
Matches are distributed among these distances:
16 10 0.48
17 11 0.52
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (16 bp):
AATTTATTTAAAACAA
Found at i:15108005 original size:20 final size:18
Alignment explanation
Indices: 15107982--15108030 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 18
15107972 AATTTTTTAA
15107982 ATATCATATTAATTTAATAT
1 ATAT-ATATTAA-TTAATAT
*
15108002 ATATATTTTTAATTAATAT
1 ATATA-TATTAATTAATAT
15108021 AT-TATATTAA
1 ATATATATTAA
15108031 AAATTTTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 5 0.19
18 2 0.08
19 10 0.38
20 9 0.35
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
ATATATATTAATTAATAT
Found at i:15108007 original size:17 final size:16
Alignment explanation
Indices: 15107977--15108030 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 16
15107967 TTAATAATTT
15107977 TTTAA-ATATCATATTAA
1 TTTAATATAT-ATATT-A
15107994 TTTAATATATATATT-
1 TTTAATATATATATTA
15108009 TTTAAT-TAATATATTA
1 TTTAATAT-ATATATTA
15108025 TATTAA
1 T-TTAA
15108031 AAATTTTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
14 1 0.03
15 13 0.39
16 1 0.03
17 14 0.42
18 4 0.12
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
TTTAATATATATATTA
Found at i:15113987 original size:21 final size:21
Alignment explanation
Indices: 15113963--15114009 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
15113953 TTTTGGATTC
15113963 AAAATTATCAACAAATAATTA
1 AAAATTATCAACAAATAATTA
15113984 AAAATTATCAACAAATAATTA
1 AAAATTATCAACAAATAATTA
15114005 AAAAT
1 AAAAT
15114010 ATTTTTGATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAATTATCAACAAATAATTA
Found at i:15116013 original size:15 final size:15
Alignment explanation
Indices: 15115993--15116051 Score: 50
Period size: 14 Copynumber: 3.9 Consensus size: 15
15115983 ATATGTTAAA
*
15115993 TAATTATAATAAAAT
1 TAATTAAAATAAAAT
*
15116008 TAATTAGAA-AAAAT
1 TAATTAAAATAAAAT
15116022 TAAATTGAAAATAAAA-
1 T-AATT-AAAATAAAAT
**
15116038 TAACAAAAATAAAA
1 TAATTAAAATAAAA
15116052 AAACTAAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
14 15 0.41
15 14 0.38
16 4 0.11
17 4 0.11
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.27
Consensus pattern (15 bp):
TAATTAAAATAAAAT
Found at i:15116838 original size:16 final size:16
Alignment explanation
Indices: 15116807--15116855 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
15116797 TAATTAATCA
15116807 TTTTTATTAACCTTTTAT
1 TTTTTATTAA--TTTTAT
15116825 TTTTTATTAATTTTAT
1 TTTTTATTAATTTTAT
* *
15116841 ATATTATT-ATTTTAT
1 TTTTTATTAATTTTAT
15116856 AATTATTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
15 7 0.24
16 12 0.41
18 10 0.34
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTATTAATTTTAT
Found at i:15116910 original size:82 final size:83
Alignment explanation
Indices: 15116737--15116910 Score: 178
Period size: 82 Copynumber: 2.1 Consensus size: 83
15116727 TATGAATGTA
* * *
15116737 TTTTTTTATTAATTTTACATATATACATTTTTTTATTAATTATTTTCGATCATGATCAAATAATT
1 TTTTTTTATTAATTTTA-ATATATACATTATTTTATTAATTATTTTCAATCATGATCAAATAATA
*
15116802 AATCATTTTTATTAACCTTT
65 AAT-ATTTTTATTAACCATT
* * *
15116822 TATTTTTTATTAATTTT-ATATAT-TATTATTTTA-TAATTATTTT-AATTATGATATCAATTAA
1 T-TTTTTTATTAATTTTAATATATACATTATTTTATTAATTATTTTCAATCATG--ATCAAATAA
*
15116883 TAAA-ATTTTTTATTAGATCATT
63 TAAATA-TTTTTATTA-ACCATT
15116905 TTTTTT
1 TTTTTT
15116911 AAAAAATTAC
Statistics
Matches: 76, Mismatches: 8, Indels: 13
0.78 0.08 0.13
Matches are distributed among these distances:
81 6 0.08
82 24 0.32
83 24 0.32
84 6 0.08
85 1 0.01
86 15 0.20
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (83 bp):
TTTTTTTATTAATTTTAATATATACATTATTTTATTAATTATTTTCAATCATGATCAAATAATAA
ATATTTTTATTAACCATT
Found at i:15117229 original size:17 final size:17
Alignment explanation
Indices: 15117209--15117242 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
15117199 TGTTTCATAA
*
15117209 TAATTTAATTGTAAAAT
1 TAATTTAATTATAAAAT
15117226 TAATTTAATTATAAAAT
1 TAATTTAATTATAAAAT
15117243 CATATTAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (17 bp):
TAATTTAATTATAAAAT
Found at i:15117764 original size:24 final size:22
Alignment explanation
Indices: 15117732--15117776 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
15117722 TTATGTCATA
*
15117732 TTTTAAATTATTATATTTATATTT
1 TTTTAAATT-TTA-ATATATATTT
*
15117756 TTTTTAATTTTAATATATATT
1 TTTTAAATTTTAATATATATT
15117777 AATAATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 3 0.16
24 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTTAAATTTTAATATATATTT
Found at i:15118005 original size:2 final size:2
Alignment explanation
Indices: 15117998--15118032 Score: 54
Period size: 2 Copynumber: 17.5 Consensus size: 2
15117988 ACACGTTAAA
15117998 AT AT AT AT AT AT AT AT AT AT A- AT AT GAT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT A
15118033 GAGATATAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 1 0.03
2 28 0.90
3 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:15118038 original size:12 final size:12
Alignment explanation
Indices: 15117998--15118040 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
15117988 ACACGTTAAA
*
15117998 ATATATATATAT
1 ATATATATATAG
15118010 ATATATATAATATG
1 ATATATAT-ATA-G
*
15118024 ATATATATAGAG
1 ATATATATATAG
15118036 ATATA
1 ATATA
15118041 AATTTAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 14 0.52
13 5 0.19
14 8 0.30
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (12 bp):
ATATATATATAG
Found at i:15124211 original size:29 final size:27
Alignment explanation
Indices: 15124144--15124211 Score: 64
Period size: 29 Copynumber: 2.3 Consensus size: 27
15124134 AAGTTTTTAT
* *
15124144 ATTTGATAAATTAAAAAATTACATTTAA
1 ATTTGA-AAAATAAAAAATTACATGTAA
*
15124172 ATTTGAAAAAAATAAAAAATCTTATATGTAA
1 ATTTG--AAAAATAAAAAA--TTACATGTAA
15124203 ATTTGAAAA
1 ATTTGAAAA
15124212 TTTAAAAGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
28 5 0.15
29 14 0.42
30 1 0.03
31 13 0.39
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (27 bp):
ATTTGAAAAATAAAAAATTACATGTAA
Done.