Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167843.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81131
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Found at i:3753 original size:890 final size:889
Alignment explanation
Indices: 2319--12286 Score: 11484
Period size: 886 Copynumber: 11.3 Consensus size: 889
2309 GACTTAGGCT
* * * * *
2319 TACGGAGTTCATTCCCACTATAAGATCGGA-TCGGACCGAGGGTTGTGGGTGCACATGCTGGGCT
1 TACGAAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGGTGCACATGCTGGGCT
* ** * *
2383 CGGGCATGTGCTGGTGCAACA-TTTTTTTCGCCTGGGGCACCATCATCGGAGCATCGTCAGAGAA
65 CGAGCATGTGCTGGTGCCGCATTTTTTTTCGCC-CGGG---C--CA-C----CATCGTCGGAGAA
* * *
2447 CCTGACC-AGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGT--GAACATGGTGTGC
119 CCTGACCGA-CGGCATTGGGGTTCCGGCGATTGGGGGGG-CGGGGGGTGTGCGCACATGATGTGC
* *
2509 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACT
182 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
2574 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATG
247 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
2639 GGGACACTTTTTTTAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
312 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
2704 GCATGCCAAAAAAAATGA-AAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCTGAAAAA
377 GCATGCCAACAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* *
2768 TTTTTAAAAAAATCTCGAACCGTAAAAAGGTTT-AGAAATCGTGAAAAATAGAAAACGAGTCGTC
441 ATTTTAAAAAAATCTCGAACCGTAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
2832 TTGCCATGAAACTTTACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
505 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
2897 CATTGGCATGTCAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
570 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
2962 GCACATCCCGCCTCTCTGGCCGACGTGGTGCCCGCCTGCTCGCCCGCTCGTTTCGTCGGTTGGCT
635 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
3027 TAGGCATACAGAGTTCATTCCAAGTCTAAGATCAGACTGGATCAAGGGTTGCAGCAGCAGGATTG
700 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
* * * * ** *
3092 GCAGCACGCTGAGGGGGCCCCCATCGATGCCCGTCTTACGCATCCTGCCCCTCTGGCCGATTAAG
765 GCAGCACGCTGAGGGGGACCCGATCGAT-CCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * *
3157 CCCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAAGGAGTTCATTCCCAGTCCAAGCA
829 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
3218 TGCGAAGTTGATTCCTAGTCTAAGATCAGACTGGATCGAGGGTTGTGGGTGCACATGCTGGGCTT
1 TACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * * *
3283 GACCATGTGCTGGTGCTGCATTCTTTTTCGCTCGGGCCACCATCGTCGGAGAACCTGACCAACGG
66 GAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGCCACCATCGTCGGAGAACCTGACCGACGG
* * * * *
3348 CATTAGGGTTCCGGCGATTGGGGGGGCGGGGCGGTATGCGCACATGATGTGTGA-GGGTGGTGTT
131 CATTGGGGTTCCGGCGATTGGGGGGGCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
3412 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
195 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
3477 CATTTGAGATTTTACAGGTCTGCTTCTAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTT
260 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
3542 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAA
325 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *** * * * * *
3607 AATACAATGATCTTTTCTACCAATTTTGAGGCAAAAAATCCTTCT-AAAGAAATTTTTAAAAAAT
390 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA-AAATTTTAAAAAAAT
* ** * *
3671 CTCGAACCGTAAAAAGGTT-AGAAAATTATAAAAAATAGAAATCGAGTCGTCTTGCCATGAAACT
454 CTCGAACCGTAAAAAGTTTCA-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
3735 TCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
518 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
***
3800 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTTACCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* * * *
3865 CTCTGGCCGGCATAGTGCCCG--C-C-CGCCCGCTCGTTTCGTCGGTTGGTTTAGGCATACAGTG
648 CTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** * * * * * **
3926 TTCATTCCCAATCTAAGATTGGACCGGCCCAAGGGTTGCAGTAGCAGGATCGGTAGCAAACTGA-
713 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTGAG
* ** * *
3990 GGGG----GA-C-A---CGGC-T--G-ATCC--CCAGCT-T-ATCGGTTGAGCGCCCACACGCTC
778 GGGGACCCGATCGATCCCGGCTTGCGCATCCTGCC-CCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
4038 ATTTCGTGAGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCA
842 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
4086 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGATCGAGGGTTGCAGGTGCACATGC
1 TACGAAGTTCATTCCCAGTCTAAG-AT-C--AG---ACTGGACCGAGGGTTGCGGGTGCACATGC
* * ** *
4151 TGGGCTCGAGCATGTGCTGGTGCCGTATTTTTTTTTTGCCCGGGCTGCCATCGCCGGAGAACCTG
59 TGGGCTCGAGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGCCACCATCGTCGGAGAACCTG
* ** * * * * * * * *
4216 ATCGGTGGCATTGGGGTTTCGACGATTGGGGGGGTGGGAGGGGTGGGTGCACTTGATGTTCAATG
123 ACCGACGGCATTGGGGTTCCGGCGATTGGGGGGG-CGG-GGGGTGTGCGCACATGATGTGCGATG
*
4281 GGTGCTGTTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCC
186 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
4345 CTTACAGAGCATTAGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
251 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
4410 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTACGAGTTTTTAGCTAAATTTTTTTGTGCAT
316 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
4475 GCCAA-AAAAATACAAGGATCA-GTCTACCAAGTGTGGGGCCAAAACTCCTCCTGAAAAAATTTT
381 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
* ** * *
4538 AAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGATAACGAGTTGTCTTGCCA
446 AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
4603 CGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
511 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
4668 CATAGCAAAAATATGAAGATCTTCCTAAACCCACCTACCACCCTATCGTTCCACGGCTTGCGCAT
576 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
4733 CCTGCCTCTCTGGCCGACGTAGAGCCCGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
641 CCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * * * * *
4798 CACAGAGTTCATTCCCAGTCTAAGATCAGACCACACTGAGGGTTACGACAGCAAGATCGGTAGCA
706 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * * * *
4863 CGCAGAGGGGGACCCGACCGATCCTCGACTTACGCATCCTG-CCTTCTGGCCGACTGAGCACCCT
771 CGCTGAGGGGGACCCGATCGATCC-CGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* * ** * *
4927 TACACTCGTTTCGTGCTTTGACTTAGGTATACGGAGTTCATTCCCAATCTAAGCA
835 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * * *
4982 TACGGAGTTCATTCCTAGTGTAAGATCGGA-TCAGACCGAAGGTTGTGGGTGCACATGCTGGGCT
1 TACGAAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGGTGCACATGCTGGGCT
* * * * *
5046 CGGGCATGTGCTGGGGCCGTATTTTTTTT-GCCCGGGGCACCAT-GGCTGGAGAACCT-------
65 CGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGCCACCATCGTC-GGAGAACCTGACCGAC
* *
5102 -G-A-T-CGG-T--GGC-ATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGG
129 GGCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
5159 CACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGA
194 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * * * * *
5223 GCCTTTGCA-ATTTTATAGGTTTGCTACCAGTAGCCCTTAAAGTGTCTGAAATAGGGACACGTTT
259 GCATTTG-AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
5287 TTCAAATGCTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
323 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * *
5352 AAAATGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCGTTCTAAAAAAATTTTAAAAAAA
388 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* *
5417 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
453 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
5482 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
518 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* * ** * * * *
5547 AAAAAATGAAGATGTGTGTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCAACCCGTCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
** * * * * * * * *
5612 CTCCAGCTGGCGTAGTGCCCACCCGCTCGCACACTTGTTTAGTCGATTGGCTTAGGCATATGGAG
648 CTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * * * * * * *
5677 TTCATTCCCAGTCTGAGATCGGACCGGACTGAGGATTGTGGTAGCAGTATCGACAGCATG-TAGA
713 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCT-GA
* * * * * * * ** * *
5741 GAGGGACCCGGTCGATCCTCGACATACGCATCTTGCCCTTCTGGCCGATTGAGTGGCCGCACGCT
777 GGGGGACCCGATCGATCC-CGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
5806 CGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCA
841 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
5855 TACGGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATCGAACCGGATCGA
1 TACGAAGTTCATTCCCAG--T---C---TA-AG---A-T--CAGACT--G---G-ACC-GA--G-
* ** * ** * *
5920 CGATTTTGGGTGCACATGCTGGGCTCTAGCATGTGCTGGTGCCATATTTTTTTTCGCTCGGGGCA
41 -GGTTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGCCA
* ** * * *
5985 CCATCGTCGGAGAACCTGATCGGTGGCATTGGGCTTTCGGCGATTGGGGGGCCGGGGGGGTGTGC
105 CCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGC-GGGGGGTGTGC
* * * *
6050 ACACATGATATTCGATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACC
169 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
6115 TCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
234 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* **
6180 AGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTTAGTTTTTAGC
299 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
* * * * *
6245 TGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATAATGTCTACCATGTTTGGGGCCAAAAAT
364 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
*
6310 CCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
429 CCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
6375 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAAC
494 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * * * *
6440 CAT-AATATGGCATTGGTAGGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATTG
559 CATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * * * *
6504 ATCCACAGCAT-CGCATCCCGCCTCTCTGGCCGGCTTGGTGCCCGCTCACCCGTCCGCTCGTTTC
624 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTC
* * * * * *
6568 GTTGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGAACGGACCGGACTGAGGGTTCCGA
689 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGG
** * * * * * *
6632 TTGTAGGATTGGCAGCGCACAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCT
754 CAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCC-GGCTTGCGCATCCTGCCCCTCT
* *
6697 GGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
818 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
6762 CTAAGCA
883 CTAAGCA
* * * * **
6769 TACGGAGTTCAATCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGGTGCACAAGCCAGGCT
1 TACGAAGTTCATTCCCAGTCTAAGATCAGACT-GGACCGAGGGTTGCGGGTGCACATGCTGGGCT
*
6833 C-AGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGTG-CACCATCACCGAAGCATTGCCGGAG
65 CGA-GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGG-GCCACCAT---C---G---T--CGGAG
* * * * *
6896 AACCTGAACGACAGCATTGGGGTTCTGGCGATTGTGGGGGC---CGG-G-G-G-----G-TGTGC
117 AACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGC
*
6949 GATGGGTGCTGGTACTTGGCCCTTATATTAGG-CCCCTATCCCTCATCAAACCTCAAGAACTCAC
182 GATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
7013 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTATGCTGCCAGTACCCATTGAAGTGTCTGAAAT
246 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
7078 GAGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTG
311 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
7143 TGCATGTCGAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
376 TGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
** * * * * *
7207 TTTTTTTAAAAAATCTCAAACTGTAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
440 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
7272 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATTG
505 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
7337 TATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
570 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
7402 ACGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCG-TCGACCCACTCGTTCCATCAGTTGGC
635 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCG-CCCGCTCGTTTCGTCGGTTGGC
** ** * * **
7466 CCAGGCATACGGAGTTCATTCCTTGTCTAAGATCAGACCGGACTGAGGTTTGCGATAGCAGGATC
699 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * *
7531 GACAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTACGCATCCTGCCCCTCTGACCGGTTGA
764 GGCAGCACGCTGAGGGGGACCCGATCGATCC-CGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* *
7596 GTGCCCGCACGCTCATTTCGT-GG--G---T-----T---GA---C-TT---AG-----GCA
828 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
*
7632 TACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTA
1 TACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * ** *
7697 GGGCATGTGCTGGTGTCGCATTTTTTTT-GCCCGGGGCACCATCACCGGAGAACCTGA---TC-G
66 GAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGCCACCATCGTCGGAGAACCTGACCGACGG
* * *
7757 -A---------CGGC-ATT-GGGGGGCGGGGGGTGTGCGTACATGATGTGCGATGGGTGGTGGCA
131 CATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
7810 CTTAGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGC
196 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* ** * * * * *
7874 ----------CTACAGGTTTGCCACCAATAACCATTAAAATGTCTGAAATAGGGACACATTTTTC
261 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
7929 ACATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATACCAAAAAAA
326 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
7994 ATGCAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAAATCC
391 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT
* *
8059 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACTTCA
456 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
8124 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGAAAAA
521 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* * **
8189 ATATGAAGATGTGCCTAAACCCACTTGCCACCCTATCGATCCACGGCTTGCGCATCTTGCCTCTC
586 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
** * * * *
8254 AAGCCGACGTAGAGCCCGCCCGC-CGGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTT
651 TGGCCGGCGTAGTGCCCGCCCGCTC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * * * *
8318 CATTCCTAGTCTAAGATCAGACCAGACTGACGGTTGCAGCAGTAAGATCGGCAGTACG-TAGAGG
715 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCT-GAGG
* * * * *
8382 GGGACCCGATCAATCCCTAGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGAACGCCCG
779 GGGACCCGATCGATCCC-GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* *
8447 TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCA
843 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * *** * * *
8494 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTAGTGGGTGCACATGCTGGGCTC
1 TACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * *
8559 GGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCAGGG-CACCATCG-CTTGAGAACTTGACCGGC
66 GAGCATGTGCTGGTGCCGCATTTTTTTTCGCCC-GGGCCACCATCGTC-GGAGAACCTGACCGAC
* ** * ** *
8622 AGCATTGGGGTTCCGATGATT--GGGGGTGGGGGGTGTGCGCGTATGATGTGTGAT-GGTGCTGG
129 GGCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
*
8684 TACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
194 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
8749 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
259 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* *
8814 TCAAATGGTCACAAAATCCTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCTACAA
324 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * *
8879 AAATACAAGGATCATGTCTACCACGTTTGGTGCCAAAAATCCTTCTGAAAAAATTTAAAAAAAAT
389 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
* * * *
8944 CTCGAGCAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTT
454 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* *
9009 CAAATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGGCA-
519 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
9073 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
584 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* * * * * *
9138 TCTGGCTGGCGTAGTGCCCACCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCTTACGGAGT
649 TCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * ** ** *
9203 TCATTCCCAGTCTAAGATCAGACCAGACCGGGGGTTGCAGCATTAGGATCGGCAGCACGAAGAAG
714 TCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTGAGG
* *
9268 GGGACCCGATCGATCCCTGGCTTGAGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTCG
779 GGGACCCGATCGATCCC-GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *
9333 TTTTGAGGGTTGAC-TACGGCATACAGAGTTCATTCCCAGTCTAAGCA
843 TTTCGTGGGTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAAGCA
* ** * *
9380 TACGGAA-TTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGGTGCACATGCTGGGCA
1 TAC-GAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCT
** * * * **
9444 CGAGCATGTGCTGGTGTAGCAATTTTTTTCACCCGAGG-CATCATCGTCGGAGAACCTGACCGGT
65 CGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCG-GGCCACCATCGTCGGAGAACCTGACCGAC
* *
9508 GGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTG
129 GGCATTGGGGTTCCGGCGATTGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * *** *
9573 GTACCTAGCACTTATATTATTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAA
193 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
9638 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATCGGGACATTTTT
258 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
9703 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCA-CCCAACA
323 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
9767 AAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAA
388 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* * *
9832 TCCCAAACCGTAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
453 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
9897 TCACATGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTA
518 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* * *
9962 GAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCAC-GTTTGCGCATCCCGTCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* ** * * * * *
10026 CTCTAGCCGATGTAGTGCGCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAG
648 CTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** * * * *
10091 TTCACTCCCAGTCTAGGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGACGGCACGCTGAG
713 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTGAG
* * * * *
10156 GGGGACCCGACCGATCCTCGGCTTGTGCATCCTGCCTCTCTGGCCAGCTGAGCACCCGCACGCTC
778 GGGGACCCGATCGATCC-CGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * *
10221 GTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAG-A
842 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * *
10268 T-C--AG---A-T--C-G----A-AT----C--GA--GA--GTTTCAGGTGCAAATGCTTGGTTC
1 TACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * * * * *
10308 GGGCATGTACTGGTGCCACATTTTTTTTCGCACAGGG-CACCATTGCCGGAGAACCTGATCGACG
66 GAGCATGTGCTGGTGCCGCATTTTTTTTCGC-CCGGGCCACCATCGTCGGAGAACCTGACCGACG
* * * *
10372 GCATTGGGGTTCCAGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
130 GCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
10437 ACTTAGCCCTTATATTGGCTCCCTCTCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAG
195 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
10502 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
260 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* * *
10567 CAAATGGTCACAAAATCCTGTATAGTTC-ACGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAA
325 CAAATGGTCACAAAATCCTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
** * **
10631 AAATACAAGGATCACGTCTACCAAGTTTGGTACCAAAACTCCTTCT-AAAAGATTTTTTTAAAAA
389 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA-AATTTTAAAAAAA
* * * *
10695 TCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGATAACTAGTCGTCTTGCCATGAAACT
453 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
10760 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT-GT
518 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGGC
* * * *
10824 AGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGTTTGTGCATCCCACC
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* ** *
10889 TCTCTGGCCGGCGTAGT----G--C-C-CGCCCACTCGTTTCGTCGAATGGCTTAGGCGTAC-GA
647 TCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * *
10945 GGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGTAGGATCGGCAGCACGTTG
712 -GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTG
* * * ** * **
11010 AGGGGCACGCGATCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGGTGGCTGAGCACCTTCACGC
776 AGGGGGACCCGATCGAT-CCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
11075 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
840 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * *
11125 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGGTGCACATGCTAGGCTC
1 TACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
* * * * * * *
11190 -AGGCATGTGCTGGTGCCGTATTTTTTTT-GCCCGGGGCACCATCATTGGAGAACTTGATCGACA
66 GA-GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGCCACCATCGTCGGAGAACCTGACCGACG
** * *
11253 GCATTAAGGTTCCAGCGATTGGAGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
130 GCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
11318 ATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
195 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
* * * *
11383 CATTTGAGATTTTATAGGTTTACTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTT
260 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
* *
11448 CAAATGGAT-ACAAAATCCTGTACACTTCGAGTTTTTAGCTTAATGTTTTTGTGCATGCCAACAA
325 CAAATGG-TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * * * * *
11512 AAATACAAGGATCACGTCTGCTAGGATTGGGGCCAAAACTTCTTCTAAAAAAATTTTTAAAAAAT
389 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
* * ** *
11577 GC-C-AACCATAAAAATTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
454 -CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
11640 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
518 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* * * *
11705 GAAATATGAAGATGTACCTAAACCCACCTACTACTCTATCGATCCACGGCTTGCGCATCTCGCCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* * * * *
11770 CTCTGGCCGACGTGGTGCTCGCCAGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAG
648 CTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* ** * * *
11835 TTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGTAGCAAGATCGGCAGCATGCTGAG
713 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTGAG
* * * * * * *
11900 GGGGACCCAATCGATCCTCGACTTGCGTC-TCTTGCCCCTCTGGTCGGCTGAGTGCCTGCTCGCT
778 GGGGACCCGATCGATCC-CGGCTTGCG-CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* * * *
11964 CGTTTCGTGGGTTGACTTAGGCATACAGATTTAATTTCCAGTCTAAGCA
841 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
12013 T--GTAGAGTTCATTCCCAGTCTAAGATCGGTCTGAACCGAGGGTTACGGGTGCACATGCTGGGC
1 TACG-A-AGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGC
* * * *
12076 TC-AGACATATGCTGGTGCCGTATTTTTTTTTGCCTGGGCCACCATCACTGGAGCATCGAAGGAG
64 TCGAG-CATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGCCACCAT--C----G--TC---GGAG
* * * * *
12140 AACCTGACCGACAGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGTGGTGTGCGCATATAATGTG
117 AACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGG-CGGGGGGTGTGCGCACATGATGTG
* * **
12205 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTAATCAAACCTCGAGAACTTGC
181 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
12270 ACCCCCTTAAAGAGCAT
246 ACCCCCTTAAAGAGCAT
12287 GTGCTGAGCG
Statistics
Matches: 7777, Mismatches: 1013, Indels: 556
0.83 0.11 0.06
Matches are distributed among these distances:
835 10 0.00
836 501 0.06
837 6 0.00
838 2 0.00
839 2 0.00
840 1 0.00
841 1 0.00
842 1 0.00
846 17 0.00
847 63 0.01
848 1 0.00
850 2 0.00
851 12 0.00
853 1 0.00
854 2 0.00
855 2 0.00
856 179 0.02
857 7 0.00
858 2 0.00
859 1 0.00
860 2 0.00
861 2 0.00
862 305 0.04
863 421 0.05
864 35 0.00
865 2 0.00
866 2 0.00
867 4 0.00
868 82 0.01
869 6 0.00
870 204 0.03
871 25 0.00
872 365 0.05
873 86 0.01
874 2 0.00
875 286 0.04
876 133 0.02
877 190 0.02
878 71 0.01
879 86 0.01
880 196 0.03
881 314 0.04
882 51 0.01
883 1 0.00
884 4 0.00
885 9 0.00
886 832 0.11
887 384 0.05
888 394 0.05
889 664 0.09
890 666 0.09
891 15 0.00
892 3 0.00
893 7 0.00
894 14 0.00
895 8 0.00
896 79 0.01
897 3 0.00
898 1 0.00
899 159 0.02
900 69 0.01
901 101 0.01
902 1 0.00
905 2 0.00
906 2 0.00
908 1 0.00
909 2 0.00
910 1 0.00
911 1 0.00
912 2 0.00
913 1 0.00
914 169 0.02
915 64 0.01
916 141 0.02
917 294 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (889 bp):
TACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGGCTC
GAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGCCACCATCGTCGGAGAACCTGACCGACGG
CATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT
CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
TGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTGAGGGG
GACCCGATCGATCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
Found at i:4093 original size:26 final size:26
Alignment explanation
Indices: 4057--4125 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
4047 GTTGACTTAG
* *
4057 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4083 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
4109 GCATACGGAGTTCATTC
1 GCATACGGAGTTCATTC
4126 GATCGAGGGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:5859 original size:26 final size:26
Alignment explanation
Indices: 5823--5904 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
5813 TGGGTTGACT
5823 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
5849 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
**
5875 TAAGCATATAGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
5901 TAAG
1 TAAG
5905 ATCGAACCGG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.28
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:6776 original size:26 final size:26
Alignment explanation
Indices: 6740--6792 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6730 GTTGACTTAG
*
6740 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
*
6766 GCATACGGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
6792 G
1 G
6793 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:8495 original size:26 final size:26
Alignment explanation
Indices: 8465--8517 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
8455 GTTGACTTAG
8465 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
8491 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
8517 G
1 G
8518 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:9390 original size:26 final size:26
Alignment explanation
Indices: 9351--9403 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
9341 GTTGACTACG
*
9351 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
*
9377 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
9403 G
1 G
9404 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:10079 original size:889 final size:888
Alignment explanation
Indices: 7629--12286 Score: 5691
Period size: 889 Copynumber: 5.3 Consensus size: 888
7619 GTTGACTTAG
* **
7629 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * ** *
7694 CTAGGGCATGTGCTGGTGTCGCATTTTTTTT-GCCCGGGGCACCATCACCGGAGAACCTGATCG-
65 CTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGCACCATCGTCGGAGAACCTGACCGA
* *
7757 -A-C------G----G-C-ATT-GGGGGGCGGGGGGTGTGCGTACATGATGTGCGATGGGTGGTG
130 CAGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
7807 GCACTTAGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAG
195 GTACTTAGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* ** * * * * *
7871 AGC----------CTACAGGTTTGCCACCAATAACCATTAAAATGTCTGAAATAGGGACACATTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
7926 TTCACATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTGTGCATACCAAAA
324 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * *
7991 AAAATGCAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAAA
389 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* * *
8056 TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGGCATGAAACT
454 TCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
8121 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGAA
519 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
* * * **
8186 AAAATATGAAGATGTGCCTAAACCCACTTGCCACCCTATCGATCCACGGCTTGCGCATCTTGCCT
584 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
** * * * * *
8251 CTCAAGCCGACGTAGAGCCCGCCCGCCGGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAG
649 CTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAG
* * * * * *
8316 TTCATTCCTAGTCTAAGATCAGACCAGACTGACGGTTGCAGCAGTAAGATCGGCAGTACG-TAGA
714 TTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGGCAGCACGCT-GA
* * * * *
8380 GGGGGACCCGATCAATCCCTAGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGAACGCC
778 GGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
*
8445 CG-TTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
843 CGTTTTGA-GGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
8491 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCAAGGGTAGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
8556 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCC-AGGGCACCATCG-CTTGAGAACTTGACC
65 CTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGA-GGCACCATCGTC-GGAGAACCTGACC
* * * ** *
8619 GGCAGCATTGGGGTTCCGATGATT--GGGGGTGGGGGGTGTGCGCGTATGATGTGTGAT-GGTGC
128 GACAGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
8681 TGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
193 TGGTACTTAGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
8746 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
257 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
8811 TTTTCAAATGGTCACAAAATCCTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCTA
322 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
8876 CAAAAATACAAGGATCATGTCTACCACGTTTGGTGCCAAAAATCCTTCTGAAAAAATTTAAAAAA
387 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * * * * *
8941 AATCTCGAGCAGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAA
452 AATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
9006 CTTCAAATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGG
517 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
9071 CA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
582 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
* * * * * * *
9135 CTCTCTGGCTGGCGTAGTGCCCACCCGCCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCTTACGG
647 CTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAG
* * * * * **
9200 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGGGGGTTGCAGCATTAGGATCGGCAGCACGAAG
712 AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGGCAGCACGCTG
* * *
9265 AAGGGGACCCGATCGATCCCTGGCTTGAGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGC
777 AGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
9330 TCGTTTTGAGGGTTGAC-TACGGCATACAGAGTTCATTCCCAGTCTAA
842 TCGTTTTGAGGGTTGACTTA-GGCATACAGAGTTCATTCCCAGTCTAA
* * *
9377 GCATACGGAATTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* ** * * * *
9442 CACGAGCATGTGCTGGTGTAGCAATTTTTTTCACCCGAGGCATCATCGTCGGAGAACCTGACCGG
65 CTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGCACCATCGTCGGAGAACCTGACCGA
** *
9507 TGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGTT
130 CAGCATTGGGGTTCCGACGATTGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * **
9572 GGTACCTAGCACTTATATTATTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
194 GGTACTTAGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
9637 AAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCTGAAATCGGGACATTTT
258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
9702 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTATTTTGTGCA-CCCAAC
323 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
9766 AAAAATACAACGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAA
388 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
*
9831 ATCCCAAACCGTAAAAATTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
453 ATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
9896 TTCACATGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGT
518 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
* * *
9961 AGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCAC-GTTTGCGCATCCCGTC
583 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* * *
10025 TCTCTAGCCGATGTAGTGCGCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGA
648 TCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGA
* * * * * *
10090 GTTCACTCCCAGTCTAGGATCAGACTAGACTGAGGGTTGCGGTAGCAGGATCGACGGCACGCTGA
713 GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGGCAGCACGCTGA
* * * * *
10155 GGGGGACCCGACCGAT-CCTCGGCTTGTGCATCCTGCCTCTCTGGCCAGCTGAGCACCCGCACGC
778 GGGGGACCCGATCGATCCCT-GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
10219 TCG-TTTCATGGGTTGACTTAGGCATAC-GAAGTTCATTCCTAGTCTAA
842 TCGTTTTGA-GGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* * * * *
10266 G-AT-C--AG---A-T--C-G----A-AT----C-GA--GA--GTTTCAGGTGCAAATGCTTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGC
* * * * * * *
10306 TCGGGCATGTACTGGTGCCACATTTTTTTTCGCAC-AGGGCACCATTGCCGGAGAACCTGATCGA
66 TCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGA-GGCACCATCGTCGGAGAACCTGACCGA
* * * *
10370 CGGCATTGGGGTTCC-AGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGCT
130 CAGCATTGGGGTTCCGA-CGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
10434 GGTACTTAGCCCTTATATTGGCTCCCTCTCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAA
194 GGTACTTAGCCCTTATATTGGC-CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
10499 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
258 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
10564 TTTCAAATGGTCACAAAATCCTGTATAGTTC-ACGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
323 TTTCAAATGGTCACAAAATCCTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* ** * **
10628 AAAAAATACAAGGATCACGTCTACCAAGTTTGGTACCAAAACTCCTTCT-AAAAGATTTTTTTAA
387 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA-AATTTTAAAA
* *
10692 AAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGATAACTAGTCGTCTTGCCATGAA
451 AAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
10757 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT
516 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-T
* * * *
10822 -GTAGAAATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGGTTTGTGCATCCC
580 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
10886 ACCTCTCTGGCCGGCGTAGT--------GCCCGCCCACTCGTTTCGTC-GAATGGCTTAGGCGTA
645 GCCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCAG-TTGGCTTAGGCATA
* * *
10942 C-GAGGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGTAGGATCGGCAGCAC
709 CAGA-GTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGGCAGCAC
* * * * * ** * **
11006 GTTGAGGGGCACGCGATCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGGTGGCTGAGCACCTTC
773 GCTGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
11071 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 ACGCTCGTTTTGAGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
11122 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCAAGGGTTGTGGGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
11187 CTC-AGGCATGTGCTGGTGCCGTATTTTTTTT-GCCCGGGGCACCATCATTGGAGAACTTGATCG
65 CTCGA-GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGCACCATCGTCGGAGAACCTGACCG
** *
11250 ACAGCATTAAGGTTCC-AGCGATTGGAGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
129 ACAGCATTGGGGTTCCGA-CGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
11314 TGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
193 TGGTACTTAGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
11379 AGAGCATTTGAGATTTTATAGGTTTACTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACATTT
257 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
11444 TTTTCAAATGGAT-ACAAAATCCTGTACACTTCGAGTTTTTAGCTTAATGTTTTTGTGCATGCCA
322 TTTTCAAATGG-TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * * *
11508 ACAAAAATACAAGGATCACGTCTGCTAGGATTGGGGCCAAAACTTCTTCTAAAAAAATTTTTAAA
386 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * ** *
11573 AAATGCC-AACCATAAAAATTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
451 AAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
11637 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
516 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
11702 GCAGAAATATGAAGATGTACCTAAACCCACCTACTACTCTATCGATCCACGGCTTGCGCATCTCG
581 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
11767 CCTCTCTGGCCGACGTGGTGCTCGCCAGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACA
646 CCTCTCTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACA
* * * *
11832 GAGTTCATTCCCAGTCTAAGATCAGACCAGATTGAGGGTTGCGGTAGCAAGATCGGCAGCATGCT
711 GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGGCAGCACGCT
* * * * * * *
11897 GAGGGGGACCCAATCGAT-CCTCGACTTGCGTC-TCTTGCCCCTCTGGTCGGCTGAGTGCCTGCT
776 GAGGGGGACCCGATCGATCCCT-GGCTTGCG-CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * * *
11960 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGATTTAATTTCCAGTCTAA
839 CGCTCGTTTTGAGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*** ** * *
12010 GCATGTAGAGTTCATTCCCAGTCTAAGATCGGTCTGAACCGAGGGTTACGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGACCAG-ACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
12075 CTC-AGACATATGCTGGTGCCGTATTTTTTTTTGCCTG-GGCCACCATCACTGGAGCATCGAAGG
65 CTCGAG-CATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGG-CACCAT--C----G--TC---GG
** * * *
12138 AGAACCTGACCGACAGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGTGGTGTGCGCATATAATG
117 AGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGGG-CGGGGGGTGTGCGCACATGATG
* * * *
12203 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTAATCAAACCTCGAGAACTT
181 TGCGATGGGTGCTGGTACTTAGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
*
12268 GCACCCCCTTAAAGAGCAT
245 ACACCCCCTTAAAGAGCAT
12287 GTGCTGAGCG
Statistics
Matches: 3289, Mismatches: 387, Indels: 201
0.85 0.10 0.05
Matches are distributed among these distances:
855 3 0.00
856 175 0.05
857 7 0.00
858 1 0.00
860 2 0.00
861 2 0.00
862 296 0.09
863 342 0.10
864 29 0.01
865 3 0.00
866 2 0.00
867 3 0.00
868 1 0.00
871 1 0.00
872 3 0.00
873 2 0.00
874 1 0.00
876 56 0.02
877 43 0.01
878 6 0.00
879 2 0.00
880 187 0.06
881 314 0.10
882 49 0.01
885 3 0.00
886 390 0.12
887 296 0.09
888 274 0.08
889 432 0.13
890 225 0.07
891 4 0.00
897 1 0.00
900 36 0.01
901 98 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGC
TCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGAGGCACCATCGTCGGAGAACCTGACCGAC
AGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTAGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
CCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
CTGGCCGACGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTT
CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGGCAGCACGCTGAGGG
GGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTTGAGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:11132 original size:26 final size:26
Alignment explanation
Indices: 11096--11148 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
11086 GTTGACTTAG
11096 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11122 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
11148 G
1 G
11149 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14852 original size:26 final size:26
Alignment explanation
Indices: 14822--14872 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14812 GTTGACTTAG
*
14822 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14848 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
14873 TGATCTGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:17257 original size:871 final size:871
Alignment explanation
Indices: 14848--26120 Score: 13213
Period size: 874 Copynumber: 12.9 Consensus size: 871
14838 CCCAGTCTAA
* * * *
14848 GCATACAGAGTTCATTCCCAGTCTATGATCTGATCGGACCGAGGGTTGCAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * ** * *
14913 CTCAGGCATGTGCTGGGGTCGCATTGTTTTTCGCCCGGATCACCATCACCAGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATT-TTTTTCGCCTGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * *
14978 AACCTGTCCGATGACATTGGGGTTCCGGCGA-TAGGGGGCTGGGGGGTTTGCGCACATGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15042 GATGGATGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCT-AGAGAACTCAC
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-AGAACTCAC
* *
15106 ACCACCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15171 GGGGACACTTTTTTCAATTGGTCACAAAATCCTGTATACTTCGACTTTTTAGCTGAATTTTTTT-
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15235 TCACAAGACAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGTA
389 T-GCATG-C-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-A
* * * ** ** *
15300 AAAATTTTTAAAAAATCCCGAATCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCA
450 AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
15365 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCCTTGTATCAATTTACAGGCCATAAAAAT
515 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
15430 GGCATTGGCAAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGAACCATGGC
580 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
15495 TTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCC-ACCACTCGTTTCGTCAGTTGG
645 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCGATTCGTCGGTTGG
** ** * * ** *
15559 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATTAGACCGAGGATTGTAGCAGCATGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * *
15624 TGGCAGCACGCTAAGGGTGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGACTG
774 CGGCAGCACGCTGAGGG-GACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* *
15689 AGCGCCCGCATGTTCGTTTCGTGTGTTGACTTAG
838 AGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAG
* * * *
15723 GCATACGGCGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTTCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
*
15788 CTCGAGCATGTGCTGGTGCCGCATTTTTTTTCG-CTCGGGGCACCATCGCCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCT-GGGGCACCATCGCCGGAGCATCGTCGGA
* * * * * *
15852 GAGCCTGACGGACGACATTGGCGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGTTGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCC-GGGGGGTGTGCGCACATGATGT
*
15917 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
15982 CACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
16047 TGGGGACACTTTTTTCAAATGGTCACAAAATTCTGTACACTTCGAGATTTTAGCTGAAATTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * * *
16112 GTGCATGCCAACAAAACTACAAGGATCGTGTCCACCAAGTTTGGGGCCAAAAATCCTCCTTAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * ** *
16177 AATTTAAACAAATCCCGAACCATAAAACGTTTTGAAAAT-AGTAAAAAATAGAAAACGAGTCGTC
453 AATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
*
16241 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
16306 CATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
16371 GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCGGCCGCCCGCTCGATTCATTGGTTGGCTT
647 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGATTCGTCGGTTGGCTT
** * * *
16436 AGGCATACGGAGTTCATTCCTGGTCTAAGATTAGACCGGATTGAGGGTTGCGGCAGCAGGATCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGG
* * *
16501 CAGCACGCTGAGGGTGACCCGATCGATCCCCGACTTACGCATCCTGCCCCTCTGGCCGACTGAGC
777 CAGCACGCTGAGGG-GACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
16566 GCCCGCACGTTCGTTTCGTGGGTTGACTTAG
841 GCCCGCACGTTCGTTTCGTGGGTTGACTTAG
* * * *
16597 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCAGGTGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
16662 CTCGGGCATGTGCTGGTGCCACATTTTTTTCACCTAGGGCACCATCGCCAGAGCATCGTAGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
16727 ACCTGTCTGACGGCATTAGGGTTCCGGCGA-TAGGGGGCCGGGGGGTTTACGCACATGATGTGCG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * **
16791 ATGGGTGTTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCGTGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
16856 CCCTCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
16921 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTCGACTTTTTAGCTGAATTTTTTTTT
325 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
16986 GCATGCCCACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * *
17051 CTTAAAAAAATCTCGAACCGTAAAAA-TTTCAAAAATCATGAAAAATAAAAAACGAGTCGTGTTG
455 TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
17115 CCATGAAACTTCACATGAAGGCTTAAGGGACCCTTGTATGAATTTTCAGGCCATAAAAATGGCAT
520 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
17180 TGGCAAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGCG
585 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
17245 CATCCTGCCTCTCTGGCCGGCGTAGT-------GCCCGTCCGCTC-ATTTCGTCGGTTGGCTTAG
650 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGA-TTCGTCGGTTGGCTTAG
* * * * * * * *
17302 GCATACGAAGTTCATTCCTAGTGTAAGATCAGACCAAACTGAGGATTGCGGCAGCAAGATTGGTA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCA
* ** * * *
17367 GCACGCTAAGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCTGCCCCTCTAGCCGGTTGAGCGC
779 GCACGCTGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG-
* *
17432 CCGCGCACTTGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CC-CGCAC--G-TTCGT---TT---C---G--T--GG-GTTGA----C--T-TAG
** **
17487 GCATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
17552 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTC-ACTCAGGGCACCATCGCCGGAGCATCATTGGA
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCT-GGGGCACCATCGCCGGAGCATCGTCGGA
* * * * *
17616 GAACCTGACCGACGGCATTAGGGTTTCGACAATT-GGGGGCCGGGGGGGTGTGTGCACATGTTGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCC-GGGGGGTGTGCGCACATGATGT
* *
17680 GCGATTGGG-GCTGGTACTTGGCCCTTATCTTGGCCCCATATCCCTCATCAAACCTCAAGAACTC
193 GCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
17744 ACACCCCCTTCAAGAGCATTTGAGATTTTACCGGTTTGCTACCAGTAGCCATTAAAGTGTCT-AA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** *
17808 AGTGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAAATTTT
322 A-TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
17873 TTGTGCACGCCAACAAAACTACAAGGATCATGTCCACCAAGTTTGGGGCAAAAACTCTTTCTGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* ** *
17938 AAAATTTAAACAAATCCCGAACCGTAAAAAGTTTTGAAAAT-AGTGAAAAATAGAAAATGAGTCG
451 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCG
18002 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
18067 GGCATTGGCATGGCAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
580 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
18132 TTGCGTATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGG
645 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCGATTCGTCGGTTGG
* ** *
18197 CTTAGGCATACGAAGTTCATTCCCCTTCTAAGATCAGACC-GAATTGAGGGTTGCGGCAGCAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGA
* * * * * *
18261 TCGGCAACACGCTAAGGGCGACCCGATCGTTCCCCGGCTTACGCATCTTGCCCCTCTGGCCGGTT
773 TCGGCAGCACGCTGAGGG-GACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
* *
18326 GAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAG
837 GAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAG
* * **
18361 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * ** *
18426 CTCAGACATGTGCTGGTGTCGCATTTTTTTTCGCCCAGGGCACCATCGCCAGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
18491 AACCAGTCCGACGGCATTGGGGTTCCGACGA-TAGGGGGGCCGGGCGGTTTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATTA-GGGGGCCGGGGGGTGTGCGCACATGATGTG
**
18555 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGTGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * * *
18620 TCCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTTCCAGTAGCCCTTAAAGTGTCTGGAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
18685 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGCACACTTCGAGTTTTTAGCTGACTTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
**
18750 TGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
18815 ATTTTAAAAACATCCCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCGTCT
454 A-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
18880 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATAGC
518 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
18945 ATTGGCATGGCAGAAATATGAAGATGTGCCGAAACCCACCTACCACCTTATCGATCTATGGCTTG
583 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
19010 CACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTTCCCAGTCTAAGATTGGATC-G-
648 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCG--CCC-G-CT-CGATTCG-TCGGT
* * * ** * ** * * ***
19073 -GACTGAGG-ATTGCGGTAGTAGGA-TCGGCAGCACG-CTGAGA-GGGACCTGACCGATCCTT--
706 TGGCTTAGGCA-TACGG-AGT-TCATTC--C--CA-GTCTAAGATCAGACCAGACTGAGGGTTGC
* * * ** ** * * * * **
19131 GGCTTGC-GCATC--CTA-C-CCCTTTGGCCAACTGAGCG---CCC-GC--ACGC-T--TG--TT
763 GGC-AGCAGGATCGGC-AGCACGCTGAGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCC
** * * * * * *** *
19180 TCGTGGGTTGACTTAG-GCATACGGA-GTTC-ATTC-CCAG-T--C-TAA
826 TC-T-GGCCGGCTGAGCGC--CCGCACGTTCGTTTCGTGGGTTGACTTAG
* * * *
19222 GCATATGGAGTTCATTCCCAGTCTAAAATCGGACCGGACTGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
19287 CTCGAGCATGTGCTGGTGCCGTAATTGTTTTT-GCTTAGGGCACCATCGCCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCG-CATT-TTTTTCGCCTGGGGCACCATCGCCGGAGCATCGTCGGA
* * *
19351 GAACCTGACCGGCGGCATTGGGGTTCCGATGATTAGGGGGCCGGGGGGGTGTGCGCACATGTTGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * * *
19416 GCGATGGGTGCTCGTACTTGGCCTTTATATTGTCCCCATATCGCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
19481 CACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19546 TGAGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTTCAATTTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19611 CTGCATGCCCACAAAAATACAA-GATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
19675 AATTTAAACAAATCTCGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACAAGTCGTC
453 AATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
* *
19739 TTGCCATGAAACTTCACATGAAGGATTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19804 CATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
582 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
19869 GTGCATCCCGCCTCTTTGGCCGGCGTAGT-------GCCCGCCCGCTCG-TTCCATCGGTTGGCT
647 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGATT-CGTCGGTTGGCT
** * * *
19926 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGACAGCAGGATCG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
* * * * *
19991 GCAGCACG-TCGAAGGGGACCCGATCGATCCCTGGCTTGCGTATCCTGCACCTCTGGCCAGACTA
776 GCAGCACGCT-G-AGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC-GGCTG
* *
20055 AGCGCCCGTCA-GCTCATTTCGTGGGTTGACTTAG
838 AGCGCCCG-CACGTTCGTTTCGTGGGTTGACTTAG
* *
20089 GCATACGGAGTTCATTCCCAGTCTAAGATTGGA-CTGGACCGAGGGTTGTGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGGTGCACATGCTGG
** * * * * * *
20153 GCTTAGGCATGTACTGGAGCAGCATTTTTTTTCGCCTGAGGCACTATCGCCAGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCGTCGGA
* *
20218 GAACCTGACCGACGGCATTGGGGTTCCGATGATTGAGGGGGTCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATT-AGGGGG-CCGGGGGGTGTGCGCACATGATG
* * ** *
20283 TGCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTA
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* * * *
20348 ACACCCCCTTAAAGAGCATTTGATATTTTACAGGCTTGTTGCCAGTAGACATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
20413 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
20478 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA-TTTGGGGCCAAAACGCCTTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * * * *
20542 AAATTTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCAT
452 AAA-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
20607 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
20672 GCATTGGCATGGAAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCT
581 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
20737 TGCGCATCCCACCTCTCTGGCCGACGTAGTGCTCGTACACCCGCCCGTTC-ATTTCGTCGGTTGT
646 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCGA-TTCGTCGGTTGG
* ** * * *
20801 CTTAGGCAGACGGAGTTCATTCCCAGTCTAAGATGGGA-CTGAACTGAGGGTTGTGACAGCAGGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGA
* * * * *
20865 TTGGCAGCACGCT-AGGGGGACCCGACCGATCCCCGACTTGTGCATCTTGCCCCTCTGGCCGGCT
773 TCGGCAGCACGCTGA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
** * * *
20929 GAGTACCTGCACGCTCGTTTTGTGGGTTGACTTAG
837 GAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAG
* * * *
20964 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * ** * * * ** * *
21029 CTTGAGCATGTGCTGGTGTCATATTTCTTTTTGTC-GGGCCACCATCGTTGGAGCATCGCCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTT-TTTTCGCCTGGGGCACCATCGCCGGAGCATCGTCGGAG
* * ** * **
21093 AACCTGACCGACGGAATTGGGGTTCCGGCGAGTGGGGGGGCCGAGGGGTGTGCGCATGTGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGA-TTAGGGGGCCGGGGGGTGTGCGCACATGATGTG
* ** * *
21158 CGATGGGTGCTGGTACTTGGCCCTTGTATTTTCCCCCTATCCCACATCAAACCTTAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* *
21223 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAATT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
21288 GGGGACACTTTTTTCAAATGGTCATAAAATCCTATACACTTCAATTTTTTAGCTAAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
21353 TGCATGCCTACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTCAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAAA
* * * * *
21418 AATTTTAAAAAATCACGACCCGTAAAAGGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCT
453 AATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
21483 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGC
518 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
21548 ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTG
583 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * **
21613 CGCATCCCGCCTCTCTGACTGGCATAGTG--C-CCGCCCGCCCGTTCGTTTAATCGGTTGGCTTA
648 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGATTCGTCGGTTGGCTTA
* * * *
21675 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GAACTGAGGTTTACGGCAGTAGGATCGG
713 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGG
* * * * *
21739 TAGCACGTTGAGTGGGACCCGATCGATCCTCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGC
777 CAGCACGCTGAG-GGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
21804 GCCCGCACGTTCAG-TTCGTGGGTTGACTTAG
841 GCCCGCACGTTC-GTTTCGTGGGTTGACTTAG
* * * * * *
21835 GCATACGAAGTTCATTCCCAGTCCAAGATCAGATCAGACCGAGGGTTACGGGTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * * * * *
21900 CTCAGACAGGTGCTGGTGTCGTATTTTTTTCGCCCGAGGCACCATCGTCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
21965 ACTTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATT-AGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
22030 GATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCCATCCTTCATCAAACCTCAAGAACTCACT
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * *
22095 CTCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
22160 CGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTACCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
22225 GCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACACCATCTGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * *
22290 TTTTAAAAAAATCCCGAACTGTAAAAAGTCTAAAAAATCATGAAAAATAGAAAACGAGTCGTGTT
455 -TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
22355 GCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGTA
519 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
22420 TTGGTATGGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGC
584 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *** * * * *
22485 ACATCCCGCCACTCTGGTAAGTGCAGTGCCCACCTGCCCGCCCGCTC-ATTTAGTCGGTTGGCTT
649 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCCGCTCGA-TTCGTCGGTTGGCTT
* * * * * * * * *
22549 AGGCATACGGATTTCATTCCCAGTGTAAGATCGGACCGGTCTAAGGGTTACGGTAGCAGGATTGG
712 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGG
* * * * * * * *
22614 TAGCATGCAGTG-GGGGACCCAACCGATCCTCGGCTTGCACATCTTGCCCTTCTGGCCGGCTGAG
777 CAGCACGC--TGAGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* *
22678 CGCCCGTACGCTT-GTTTCATGGGTTGACTTAG
840 CGCCCGCACG-TTCGTTTCGTGGGTTGACTTAG
*
22710 GCATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A-T--C-G-----GA-C----C-G--
* * * * *
22775 CAAGGGTTACGGGTGCACATGTTGGGCTCGAGCATGTGCTGGTGCCGCATTTTATTTTGCCCGGG
42 --AGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT-TTTCGCCTGGG
* * *
22840 GCACCAT--------CA-C-T-GGAGAACCTGACCGACGGCATTGGGGTTTCGGCGATTGGGGGG
104 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-AGGGG
22894 GCCGGGGGGTGTGCGCACATGATGTGC-ATTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
168 GCCGGGGGGTGTGCGCACATGATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
22958 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
232 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
23023 ACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
*
23088 CTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAG
362 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
23152 TTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAA
427 TTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* * *
23217 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTG
491 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
23282 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATCAAGATGTGCCTAAACCCA
556 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* ** *
23347 CCTACCACCCTATCGATCCACGTCTTTTGCATCCCGCCTCTCTGGCCGTCGTAGTG--C-CCGCC
621 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCGCC
* * * * *
23409 TGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTAATTCCCAGTCTAAGA-CCGAACCA
686 CGCCCGCTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCA
* * * * * * ** * *
23473 GACCGAGGGTTGTGACAGCAAGATCAGTAGCACATTGAAGGGGACTCGATCGATCCCTGGCTTGC
750 GACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTG-AGGGGACCCGATCGATCCCCGGCTTGC
* * * * * *
23538 GCATGCTGCCCCTTTGGCAGGCTGAGCGCCCGCACGTTCGTTTCAT-GGTTCAACTTTG
814 GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTT-GACTTAG
23596 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGAAC
1 GCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GATC-G---G-AC
* * *
23661 CGAGTGTTGCGGGTGCACATGCTGGGCTCTGGCATGTGCTGGTGCCGTATTTTTTTTCGCCTGGG
40 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCTGGG
* *
23726 GCACCAT--------CA---TCGAAGAACCTGACC-AGCGGCATTGGGGTTCTGACGATT-GCGG
104 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA-CGGCATTGGGGTTCCGACGATTAG-GG
* * * *
23778 GGCAGAGGGGTGTACGCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCT
167 GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * * *
23843 ATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAAAGCATTTGAGATTTTACAGGTTTACT
232 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * *
23908 GCCAGTAGCCATTAAAGTGTCTAAAATGAGGTCACTTTTTTCAAATGATCACAAAATCCTGTACA
297 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * *
23973 CATT-GAGTTTTTAGCTGAATTGTTTTATGCTTGCCAACAAAAATACAAGGATCACGTCTACCAA
362 C-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
24037 GTTTGGGGCCAAAACT-C--CTGAAAAAATTTGAAAAAAATCTCGAACCGTAAAATGTTTTAAAA
426 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTT-AAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
** * * *
24099 ATTGTGAAAAATAAAAAACGAGTCATTTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
490 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
*
24164 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAACC
555 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
* * *
24229 ACCTACTACCCTATCGATCCACGGCTTGCGCATCTCGCCTCTCTGGCCGGCGTAGTGCCCTCCCG
620 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCC-GCCG
*
24294 CCCGCCCGCTC-ATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGAC
684 CCCGCCCGCTCGA-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * * **
24358 CA-AATGGAGGGTTGTGGTAGTAGGATCGGTAGCACACTGAGGGGGACCTGGTCGATCCTTGGCT
748 CAGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCTGA-GGGGACCCGATCGATCCCCGGCT
* * * * * *** *
24422 TGCGCATCTTGCCTCTCTGGCCGGTTGAACGCCCACATACTCGTTTCATGGGTTGACTTAG
811 TGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAG
* * *
24483 GCATACAGAGCTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * ** *
24548 CTCGAGCATTTGCTGGTGCCGTATTTTTTTTCACCCGGGGCACCATCGTTGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * *
24613 AACCTGACCGACGGCATTAGGGTTTCGACCATTGCGGGGGCCTGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATT-AGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
24678 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTTATCAAACTTCAAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
24743 ACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
24808 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTA
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
24873 TGCATGGCC-ACAAAAATACAAGGATCACGTCTACCAAATTTGGGTCCAAAATTCCTTCTGAAAG
389 TGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* ** * *
24937 AAGTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATATAAAAAATGAGT-GT
453 AATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG-AAAA-ATAGAAAACGAGTCGT
**
25001 CTTGAAATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
25066 GCATTGGCAAAGCTGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACT
581 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
25131 TGCGCATCCCGCCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGTC
646 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCGCCCGCTCGATTCGTCGGTTGGC
* ** * * *** *
25196 TTAGGCATACGGAGTTAATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTATAGCAGCAAGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATC
** * * * *
25261 AACAGCATGCTGAAGGGGACCCGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCTGGTTGA
775 GGCAGCACGCTG-AGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* *
25326 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
839 GCGCCCGCACGTTCGTTTCGTGGGTTGACTTAG
25359 GCATACGGAGTTCATTCCCAGTCTAAGCAAATGGAGTTCATTCTAGTCTAAGATCAGACCAGACC
1 GCATACGGAGTTCATTCCCAGTCT------A---AG---A-TC--G-----GATC-G----GACC
* * * *
25424 GAGGGTTGGGGGTGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGTATTTTTTTCGCCCGGGGC
41 GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCTGGGGC
* * ** * *
25489 ACCAT--------CA-C--CGGAGAACCTGACCTACGGCATTGGGGTTTCGGTGATTGATGGGCC
106 ACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-AGGGGGC
* * *
25543 CGGGGGAGGTGTGCGTACATGATGTGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
170 C-GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
25608 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTT
233 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
25673 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTGCAC
298 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
*
25738 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAA-AAAAATACAAGGATCACATCTACCAAG
363 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAG
* *
25802 TTTGGGGCCAAAACTCCTTCTGAAAAAAGTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
427 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
25867 TATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
492 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* ** * *
25932 ATAAATTTACAAGCCATAAAAATGGCATTGGCATTACGGAAATATGAATATGTGCCTAAACCCAC
557 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
25997 CTACCACCCTATCGATCCATGACTTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCC-CTT
622 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCGC--
* ** * * *
26061 CCGCCCGCTCGTTTAATCGGTTGGCTTAGGCATACGGAGTCCATTCCCAATCTAATATCA
685 CCGCCCGCTCGATTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
26121 AACTGGACCG
Statistics
Matches: 8966, Mismatches: 1133, Indels: 583
0.84 0.11 0.05
Matches are distributed among these distances:
843 1 0.00
844 7 0.00
845 13 0.00
846 7 0.00
847 9 0.00
848 8 0.00
849 14 0.00
850 5 0.00
851 8 0.00
852 5 0.00
854 2 0.00
855 2 0.00
857 2 0.00
858 1 0.00
860 206 0.02
861 265 0.03
862 230 0.03
863 2 0.00
864 132 0.01
865 9 0.00
866 23 0.00
867 148 0.02
868 253 0.03
869 223 0.02
870 103 0.01
871 906 0.10
872 247 0.03
873 547 0.06
874 1134 0.13
875 730 0.08
876 405 0.05
877 318 0.04
878 20 0.00
879 9 0.00
880 14 0.00
881 11 0.00
882 18 0.00
883 219 0.02
884 4 0.00
885 214 0.02
886 309 0.03
887 174 0.02
888 10 0.00
889 56 0.01
890 566 0.06
891 802 0.09
892 266 0.03
893 5 0.00
894 2 0.00
895 8 0.00
896 7 0.00
897 7 0.00
898 6 0.00
899 8 0.00
900 155 0.02
901 93 0.01
902 16 0.00
903 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATTAGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCCGCTCGATTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGC
ACGCTGAGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
CACGTTCGTTTCGTGGGTTGACTTAG
Found at i:17921 original size:891 final size:890
Alignment explanation
Indices: 16597--26120 Score: 11133
Period size: 891 Copynumber: 10.8 Consensus size: 890
16587 GTTGACTTAG
* * * *
16597 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCAGGTGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
16662 CTCGGGCATGTGCTGGTGCCACA-TTTTTTTCACCTAGGGCACCATCGCCAGAGCATCGTAGGAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCC-AGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * * * *
16726 AACCTGTCTGACGGCATTAGGGTTCCGGCGATAGGGGGCCGGGGGGTTTACGCACATGATGTGCG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * **
16791 ATGGGTGTTGGTACTTGGCCCTTATTTTGGCCCCCTATCCCTCATCAAACCTCGTGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
16856 CCCTCTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
16921 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTCGACTTTTTAGCTGAATTTTTTTTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
16986 GCATGCCCACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * *
17051 CTTAAAAAAATCTCGAACCGTAAAAA-TTTCAAAAATCATGAAAAATAAAAAACGAGTCGTGTTG
454 TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * *
17115 CCATGAAACTTCACATGAAGGCTTAAGGGACCCTTGTATGAATTTTCAGGCCATAAAAATGGCAT
519 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
17180 TGGCAAGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATGGCTTGCG
584 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
17245 CATCCTGCCTCTCTGGCCGGCGTAGTGCCCGTCCGCTCATTTCGTCGGTTGGCTTAGGCATACGA
649 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * * * *
17310 AGTTCATTCCTAGTGTAAGATCAGACCAAACTGAGGATTGCGGCAGCAAGATTGGTAGCACGCTA
714 AGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTA
** * * *
17375 AGGGGGACCCGGCCGATCCCTGGCTTGCGCATCCTGCCCCTCTAGCCGGTTGAGCGCCCGCGCAC
779 AGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACAC
* *
17440 TTGTTTCGTGGGTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
844 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** **
17487 GCATACAAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
17552 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTCACTCAGGGCACCATCGCCGGAGCATCATTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGC-CAGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * *
17617 AACCTGACCGACGGCATTAGGGTTTCGACAATTGGGGGCCGGGGGGGTGTGTGCACATGTTGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGCC-GGGGGGTGTGCGCACATGATGTGC
* *
17682 GATTGGG-GCTGGTACTTGGCCCTTATCTTGGCCCCATATCCCTCATCAAACCTCAAGAACTCAC
194 GA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
17746 ACCCCCTTCAAGAGCATTTGAGATTTTACCGGTTTGCTACCAGTAGCCATTAAAGTGTCT-AAAG
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA-
** *
17810 TGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
17875 GTGCACGCCAACAAAACTACAAGGATCATGTCCACCAAGTTTGGGGCAAAAACTCTTTCTGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* ** *
17940 AATTTAAACAAATCCCGAACCGTAAAAAGTTTTGAAAAT-AGTGAAAAATAGAAAATGAGTCGTC
452 AATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
18004 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
18069 CATTGGCATGGCAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
18134 GCGTATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCGTCGGTTGGCT
646 GCGCATCCCGCCTCTCTGGCCGGCGTAGT----G--C--CCGCCCGCTCGTTTCGTCGGTTGGCT
* ** * *
18199 TAGGCATACGAAGTTCATTCCCCTTCTAAGATCAGACCGAATTGAGGGTTGCGGCAGCAGGATCG
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCG
* * * * * * *
18264 GCAACACGCTAAGGGCGACCCGATCGTTCCCCGGCTTACGCATCTTGCCCCTCTGGCCGGTTGAG
768 GCAGCACGCTAAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* *
18329 CGCCCGCACGCTCGTTTCGTAGGTTGAC-T-----TA--G-G--------CA---T-A
833 CGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
18366 -C--A--GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
18426 CTCAGACATGTGCTGGTGTCGCATTTTTTTTCGCCCAGGGCACCATCGCCAGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCG-CCAGGGCACCATCGCCGGAGCATCGTCGGAG
* * * * *
18491 AACCAGTCCGACGGCATTGGGGTTCCGACGATAGGGGGGCCGGGCGGTTTGCGCACATGATGTGC
130 AACCTGACCGACGGCATTGGGGTTCCGACGAT-TGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** *
18556 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGTGAACTCACT
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * * *
18621 CCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTTCCAGTAGCCCTTAAAGTGTCTGGAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
18686 GGGACACTTTTTTCAAATGGTCACAAAATCCTGCACACTTCGAGTTTTTAGCTGACTTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
**
18751 GCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * *
18816 TTTTAAAAACATCCCGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATCGTCTT
454 -TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
18881 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATAGCA
518 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
18946 TTGGCATGGCAGAAATATGAAGATGTGCCGAAACCCACCTACCACCTTATCGATCTATGGCTTGC
583 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
19011 ACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-TTC--C------C--AGTC-TA--
648 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * *
19062 -AG---ATT----G-----GATC-G----GACTGAGGATTGCGGTAGTAGGATCGGCAGCACGCT
713 GAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCT
* * * * * * * ** *
19109 GAGAGGGACCTGACCGATCCTTGGCTTGCGCATCCTACCCCTTTGGCCAACTGAGCGCCCGCACG
778 AAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACA
*
19174 CTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
19222 GCATATGGAGTTCATTCCCAGTCTAAAATCGGACCGGACTGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
19287 CTCGAGCATGTGCTGGTGCCGTAATTGTTTTT-GCTTAGGGCACCATCGCCGGAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCG-CATTTTTTTTCGC-CAGGGCACCATCGCCGGAGCATCGTCGGA
* * *
19351 GAACCTGACCGGCGGCATTGGGGTTCCGATGATTAGGGGGCCGGGGGGGTGTGCGCACATGTTGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGCC-GGGGGGTGTGCGCACATGATGT
* * * * *
19416 GCGATGGGTGCTCGTACTTGGCCTTTATATTGTCCCCATATCGCTCATCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
19481 CACCCCCTGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
19546 TGAGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTTCAATTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
19611 CTGCATGCCCACAAAAATACAA-GATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
19675 AATTTAAACAAATCTCGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACAAGTCGTC
452 AATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTC
* *
19739 TTGCCATGAAACTTCACATGAAGGATTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGG
516 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
19804 CATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
581 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
19869 GTGCATCCCGCCTCTTTGGCCGGCGTAGTGCCCGCCCGCTCGTTCCATCGGTTGGCTTAGGCATA
646 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * *
19934 CGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGTGACAGCAGGATCGGCAGCACG
711 CGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * * *
19999 TCGAA-GGGGACCCGATCGATCCCTGGCTTGCGTATCCTGCACCTCTGGCCAGACTAAGCGCCCG
776 -CTAAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCC-GGCTGAGCGCCCG
* *
20063 TCA-GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
839 -CACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
20111 -C-TA---AG---ATT----G-----GA-C---T-GGACCGAGGGTTGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
** * * * * * *
20154 CTTAGGCATGTACTGGAGCAGCATTTTTTTTCGCCTGAGGCACTATCGCCAGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCAG-GGCACCATCGCCGGAGCATCGTCGGAG
* *
20219 AACCTGACCGACGGCATTGGGGTTCCGATGATTGAGGGGGTCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATT--GGGGG-CCGGGGGGTGTGCGCACATGATGT
* * ** *
20284 GCGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTAA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
20349 CACCCCCTTAAAGAGCATTTGATATTTTACAGGCTTGTTGCCAGTAGACATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
20414 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
20479 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAA-TTTGGGGCCAAAACGCCTTCTGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * * * *
20543 AATTTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATC
452 AA-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
20608 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
20673 CATTGGCATGGAAGAGATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTT
581 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
20738 GCGCATCCCACCTCTCTGGCCGACGTAGTGCTCGTACACCCGCCCGTTCATTTCGTCGGTTGTCT
646 GCGCATCCCGCCTCTCTGGCCGGCGTA--G-T-G----CCCGCCCGCTCGTTTCGTCGGTTGGCT
* ** ** * * *
20803 TAGGCAGACGGAGTTCATTCCCAGTCTAAGATGGGACTGAACTGAGGGTTGTGACAGCAGGATTG
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCG
* * * * *
20868 GCAGCACGCT-AGGGGGACCCGACCGATCCCCGACTTGTGCATCTTGCCCCTCTGGCCGGCTGAG
768 GCAGCACGCTAAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
** * * * *
20932 TACCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAG--T--
833 CGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
20986 -C-TA---AG---A-T--C-G----A-A-C----CGGACCGAGGGTTGCAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * ** * ** * *
21029 CTTGAGCATGTGCTGGTGTCATATTTCTTTTT-GTC-GGGCCACCATCGTTGGAGCATCGCCAGA
66 CTCGGGCATGTGCTGGTGCCGCATTT-TTTTTCGCCAGGG-CACCATCGCCGGAGCATCGTCGGA
* * * * **
21092 GAACCTGACCGACGGAATTGGGGTTCCGGCGAGTGGGGGGGCCGAGGGGTGTGCGCATGTGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGA-T-TGGGGGCCGGGGGGTGTGCGCACATGATGT
* ** * *
21157 GCGATGGGTGCTGGTACTTGGCCCTTGTATTTTCCCCCTATCCCACATCAAACCTTAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
21222 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAT
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
21287 TGGGGACACTTTTTTCAAATGGTCATAAAATCCTATACACTTCAATTTTTTAGCTAAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
21352 GTGCATGCCTACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTCAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAAA
* * * * *
21417 AAATTTTAAAAAATCACGACCCGTAAAAGGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
451 AAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
21482 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGG
516 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
21547 CATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTT
581 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * **
21612 GCGCATCCCGCCTCTCTGACTGGCATAGTGCCCGCCCGCCCGTTCGTTTAATCGGTTGGCTTAGG
646 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG--C--TCGTTTCGTCGGTTGGCTTAGG
* * * * * *
21677 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGAACTGAGGTTTACGGCAGTAGGATCGGTAG
707 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * *
21742 CACGTTGAGTGGGACCCGATCGAT-CCTCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCGC
772 CACGCTAAGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
** *
21806 CCGCACGTTCAG-TTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC---
836 CCGCACACTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
21858 -C--A---AG---------A-TC--AGATC--A---GACCGAGGGTTACGGGTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * * * *
21900 CTCAGACAGGTGCTGGTGTCGTA-TTTTTTTCGCCCGAGGCACCATCGTCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCAG-GGCACCATCGCCGGAGCATCGTCGGAG
* * *
21964 AACTTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCAGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATT--GGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
22029 CGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCCATCCTTCATCAAACCTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * * *
22094 TCTCCCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
22159 GCGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTACCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
22224 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGTCCAAAACACCATCTGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
22289 ATTTTAAAAAAATCCCGAACTGTAAAAAGTCTAAAAAATCATGAAAAATAGAAAACGAGTCGTGT
453 A-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
22354 TGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGT
517 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
22419 ATTGGTATGGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTG
582 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** * * *
22484 CACATCCCGCCACTCTGGTAAGTGCAGTGCCCACCTGCCCGCCCGCTCATTTAGTCGGTTGGCTT
647 CGCATCCCGCCTCTCTGG-CCG-GC-GT----A-GTGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *** * * * *
22549 AGGCATACGGATTTCATTCCCAGTGTAAGATCGGACCGGTCTAAGGGTTACGGTAGCAGGATTGG
704 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGG
* * * * * * * *
22614 TAGCATGC-AGTGGGGGACCCAACCGAT-CCTCGGCTTGCACATCTTGCCCTTCTGGCCGGCTGA
769 CAGCACGCTA-AGGGGGACCCGATCGATCCCT-GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * * * *
22677 GCGCCCGTACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
832 GCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
22736 GCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGACCAAGGGTTACGGGTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* *
22801 CTCGAGCATGTGCTGGTGCCGCATTTTATTTT-GCCCGGGGCACCAT--------CA-C-T-GGA
66 CTCGGGCATGTGCTGGTGCCGCATTTT-TTTTCG-CCAGGGCACCATCGCCGGAGCATCGTCGGA
* *
22854 GAACCTGACCGACGGCATTGGGGTTTCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATT--GGGGGCCGGGGGGTGTGCGCACATGATGT
22919 GC-ATTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
192 GCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
*
22983 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
23048 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
23112 TGTGCATGCCAACAAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
23177 AAATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT
451 AAA-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
23242 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
23307 GCATTGGCATGGCAAAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGTCT
580 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** *
23372 TTTGCATCCCGCCTCTCTGGCCGTCGTAGTGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
645 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * * * * *
23437 GCATACAGAGTTAATTCCCAGTCTAAGA-CCGAACCAGACCGAGGGTTGTGACAGCAAGATCAGT
706 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAAACTGAGGGTTGCGGCAGCAGGATCGGC
** * * * *
23501 AGCACATTGAA-GGGGACTCGATCGATCCCTGGCTTGCGCATGCTGCCCCTTTGGCAGGCTGAGC
770 AGCACGCT-AAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
** * * *
23565 GCCCGCACGTTCGTTTCAT-GGTTCAACTTTGGCATACGGAGTTCATTCCCAGTCTAA
834 GCCCGCACACTCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
23622 GCATATGGAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGTGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
23687 CTCTGGCATGTGCTGGTGCCGTATTTTTTTTCGCCTGGGGCACCAT--------CA---TCGAAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCC-AGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
23741 AACCTGACC-AGCGGCATTGGGGTTCTGACGATTGCGGGGCAGAGGGGTGTACGCACATGATGTG
130 AACCTGACCGA-CGGCATTGGGGTTCCGACGATTG-GGGGCCGGGGGGTGTGCGCACATGATGTG
* *
23805 CGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * *
23870 ACCCCTTTAAAAAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
23935 GAGGTCACTTTTTTCAAATGATCACAAAATCCTGTACACATT-GAGTTTTTAGCTGAATTGTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTT
* *
23999 ATGCTTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-C--CTGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * ** * * *
24061 AATTTGAAAAAAATCTCGAACCGTAAAATGTTTTAAAAATTGTGAAAAATAAAAAACGAGTCATT
452 AATTT-AAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
24126 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
24191 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAAACCACCTACTACCCTATCGATCCACGGCTT
581 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
24256 GCGCATCTCGCCTCTCTGGCCGGCGTAGTGCCCTCCCGCCCGCCCGCTCATTTCGTCGGTTGGCT
646 GCGCATCCCGCCTCTCTGGCCGGCGTA--G---T---GCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
24321 TAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAA-TGGAGGGTTGTGGTAGTAGGATC
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACT-GAGGGTTGCGGCAGCAGGATC
* * * * * * * * *
24385 GGTAGCACACTGAGGGGGACCTGGTCGATCCTTGGCTTGCGCATCTTGCCTCTCTGGCCGGTTGA
767 GGCAGCACGCTAAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * * *
24450 ACGCCCACATACTCGTTTCATGGGTTGACTTAGG----C--A--T-A----CAG----A
832 GCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
24492 G----C-----TCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * ** *
24548 CTCGAGCATTTGCTGGTGCCGTATTTTTTTTCACCCGGGGCACCATCGTTGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTC-GCCAGGGCACCATCGCCGGAGCATCGTCGGAG
* * * *
24613 AACCTGACCGACGGCATTAGGGTTTCGACCATTGCGGGGGCCTGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATT--GGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
24678 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTTATCAAACTTCAAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * *
24743 ACCCCCTTAAAGAGCATTTGACATTTTATAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
24808 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTA
323 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
24873 TGCATGGCC-ACAAAAATACAAGGATCACGTCTACCAAATTTGGGTCCAAAATTCCTTCTGAAAG
388 TGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* ** * *
24937 AAGTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATATAAAAAATGAGT-GT
452 AATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATG-AAAA-ATAGAAAACGAGTCGT
**
25001 CTTGAAATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
25066 GCATTGGCAAAGCTGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGACT
580 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
25131 TGCGCATCCCGCCTCTCTGGCAGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGTC
645 TGCGCATCCCGCCTCTCTGGCCGGCGTAGT----GCCCG--C-CC-GCTCGTTTCGTCGGTTGGC
* ** * * * *** *
25196 TTAGGCATACGGAGTTAATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTATAGCAGCAAGATC
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATC
** * * * * *
25261 AACAGCATGCTGAA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCTGGTTG
767 GGCAGCACGCT-AAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* *
25325 AGTGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
25385 GCAAATGGAGTTCATT-CTAGTCTAAGATCAGACCAGACCGAGGGTTGGGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
25449 CTCGGGCATGTGTTGGTGCCGTA-TTTTTTTCGCCCGGGGCACCAT--------CA-C--CGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCG-CCAGGGCACCATCGCCGGAGCATCGTCGGAG
* * ** * *
25502 AACCTGACCTACGGCATTGGGGTTTCGGTGATTGATGGGCCCGGGGGAGGTGTGCGTACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATTG--GGGGCC-GGGG-GGTGTGCGCACATGATG
* * *
25567 TGTGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
* *
25632 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
25697 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTGCACTTCGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
25762 TGTGCATGCCCAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
386 TGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * *
25826 AAAAGTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGT
450 AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
25891 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * * *
25956 GCATTGGCATTACGGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACT
580 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* **
26021 TGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCTTCCGCCCGCTCGTTTAATCGGTTGGC
645 TGCGCATCCCGCCTCTCTGGCCGGCGTAGT----G--C--CCGCCCGCTCGTTTCGTCGGTTGGC
* * *
26086 TTAGGCATACGGAGTCCATTCCCAATCTAATATCA
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
26121 AACTGGACCG
Statistics
Matches: 7470, Mismatches: 893, Indels: 542
0.84 0.10 0.06
Matches are distributed among these distances:
835 96 0.01
836 1 0.00
839 1 0.00
840 4 0.00
841 2 0.00
843 1 0.00
844 1 0.00
849 3 0.00
852 4 0.00
855 3 0.00
856 4 0.00
857 1 0.00
858 1 0.00
859 1 0.00
860 213 0.03
861 269 0.04
862 223 0.03
863 1 0.00
864 1 0.00
866 20 0.00
867 112 0.01
868 249 0.03
869 222 0.03
870 93 0.01
871 632 0.08
872 53 0.01
873 485 0.06
874 675 0.09
875 533 0.07
876 352 0.05
877 103 0.01
878 6 0.00
879 13 0.00
880 2 0.00
881 5 0.00
882 7 0.00
883 208 0.03
884 7 0.00
885 217 0.03
886 344 0.05
887 156 0.02
888 13 0.00
889 54 0.01
890 551 0.07
891 805 0.11
892 329 0.04
893 63 0.01
894 11 0.00
896 6 0.00
898 2 0.00
899 1 0.00
900 179 0.02
901 108 0.01
902 17 0.00
903 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCAGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTAAG
GGGGACCCGATCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACACTC
GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:19232 original size:26 final size:26
Alignment explanation
Indices: 19196--19247 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
19186 GTTGACTTAG
19196 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
19222 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
19248 AATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22740 original size:26 final size:26
Alignment explanation
Indices: 22710--22762 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22700 GTTGACTTAG
*
22710 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22736 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22762 G
1 G
22763 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:23626 original size:26 final size:26
Alignment explanation
Indices: 23596--23648 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23586 TTCAACTTTG
23596 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
23622 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
23648 G
1 G
23649 ATCAGATCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:27879 original size:875 final size:871
Alignment explanation
Indices: 26139--28084 Score: 2703
Period size: 875 Copynumber: 2.2 Consensus size: 871
26129 CGAGGTTGCA
* * * *
26139 GGTGCACATGTTGGGCTT-AGGCATGTGCTGGTGCCGCATTTTTTTTTGCTTGGGACACCATCGT
1 GGTGCACATGCTGGGCTTGA-GCATGTGCTGGTGCCGCATTTTTTTTTACTCGGGGCACCATCGT
* * * *
26203 CGGAGCATCGTCGGAGAACCTGGCCGGAGGCATTGGGGTTCCGGCGATTGAGGGGGCCGGAGGGG
65 CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCC-G-GGGG
* * * *
26268 GTGTGCGCACATGATTTGTGAT-GGTGCTGGTACTTGGTCCTTAAATTGGCCCTGTATCCCTCAT
128 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCC-CTATCCCTCAT
*** *
26332 CAAACCTTTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGC
191 CAAACCGCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGC
* * ** * *
26397 CATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCTAGTT
256 CATTAAAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCCTGCACACTTCGAGTT
** *
26462 TTTAGCTGAATTGTTTTGTACATGCCAGCAGAAATACAAGGATCACATCTACCAAGTTTGGGGCC
321 TTTAGCTGAATTGTTTTGTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCC
* * **
26527 AAAACTCCTTCTGAAAAAATTTGAAAAAAATCCCGAACCGTAAAAGGTTTTGAAAATCATGAAAA
386 AAAACTCCTTCTGAAAAAATTTGAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAA
*
26592 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
451 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAACGGACCATTGTATGAATTT
* *
26657 ACAAGCCATAAAAATGGCATTGAATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCC
516 ACAAGCCATAAAAATGGCATTGAATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACAC
* * * *
26722 TATCGATCCACGGCTTGCGCATCCCGCCTTTCTGGCCGGCGTAGTGCCCTCCCGCCCGCCCGCTC
581 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCACCCGCTC
*
26787 GTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACAGAGGGT
646 GTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACAGAGGGT
* * * * ** * ** *
26852 TTCGTAGCAGGATCGGCAGCACACTGAGGGGGACCTGGTCGATCCTCGGCTTGCTCATCCTGTCC
711 TGCGCAGCAGGATCGACAGCACACTGAGGGAGACCCAGTCGATCCCCAACTTGCGCATCCTGTCC
* * * *
26917 CTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACAGAGTTCATTCC
776 CTCTGGCCGACTGAGCACCCGCACGCTCATTTCATTGGTTGACTTAAGCATACAAAGTTCATTCC
**
26982 CAGTCTAGGATCGGACCGGACC-A-AGGGTTGTG
841 CAGTCTA-GA-C-GACCGGACCAACAGGGTTACG
* *
27014 GGTGCACTTGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTTTTTTACCCGGGGCACCATCGTC
1 GGTGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTTTTTTACTCGGGGCACCATCGTC
* * * *
27079 GAAGCATCGTCGGAGAAGCTGACCGGCGGCATTAGGGTTCTGACGATTGGGGGGGCCGGGGGTGT
66 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGG-GT
27144 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCACTATCCCTCATCA
130 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC-TTATATTGGCCC-CTATCCCTCATCA
* * *
27209 AATCGCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCA
193 AACCGCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCA
27274 TTAAAGTGTCT-AGAATGGGGACACTTTTCTCAAATGGTCACAAAATCCTGCACACTTCGAGTTT
258 TTAAAGTGTCTGA-AATGGGGACACTTTTCTCAAATGGTCACAAAATCCTGCACACTTCGAGTTT
* * *
27338 TTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAGAAGGATCACATCTACCAAGTTTGGGG-CA
322 TTAGCTGAATTGTTTTGTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCA
** * *
27402 AAACTCCTTCTGAAAAAATTTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAA
387 AAACTCCTTCTGAAAAAATTTGAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAA
* * *
27467 TAGAAAATGAGTCGTCTTGCCATTAAACTTCACATGAAGGCTTAACGGACCATTGTATGAATTTA
452 TAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAACGGACCATTGTATGAATTTA
* *
27532 CAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACAC
517 CAAGCCATAAAAATGGCATT-GAATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACAC
* *
27597 TATTGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCACCCGCTC
581 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCACCCGCTC
* * *
27662 GCTCTTTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCATACCAGACCGA
646 G----TTTCATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACAGA
* **
27727 GGGTTGCGGCAGTAGGATCGACAGCACGTTGAGGGAGACCCAG-CAGATCCCCAACTTGCGCATC
707 GGGTTGC-GCAGCAGGATCGACAGCACACTGAGGGAGACCCAGTC-GATCCCCAACTTGCGCATC
* *
27791 CTG-CCTCTCTGGCTGACTGAGCACCCGTACGCTCATTTCA-TGAGTTGACTTAAGCATACAAAG
770 CTGTCC-CTCTGGCCGACTGAGCACCCGCACGCTCATTTCATTG-GTTGACTTAAGCATACAAAG
*
27854 TTCATTCCCAGTCTA-A-GATCGGACCAGATCGAGGGTTACG
833 TTCATTCCCAGTCTAGACGACCGGACCA-A-C-AGGGTTACG
* * * * * * *
27894 GGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCAGTGGGGGCACCATCGCC
1 GGTGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTTTTTTACTCGGGGCACCATCGTC
* * * *
27959 GGAGCATCGTCGGAAAACCTAACTGGCGGCATTGGGGTTCCGACGATT-GGGGGGTCGGGGGGTG
66 GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTG
*
28023 TGCGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCT-ATCA
131 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCTATCCCTCATCA
28085 TAACGTCTAG
Statistics
Matches: 947, Mismatches: 104, Indels: 39
0.87 0.10 0.04
Matches are distributed among these distances:
873 4 0.00
874 164 0.17
875 422 0.45
876 5 0.01
877 9 0.01
878 50 0.05
879 81 0.09
880 212 0.22
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
GGTGCACATGCTGGGCTTGAGCATGTGCTGGTGCCGCATTTTTTTTTACTCGGGGCACCATCGTC
GGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCTTATATTGGCCCCTATCCCTCATCAAAC
CGCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTCTCAAATGGTCACAAAATCCTGCACACTTCGAGTTTTTAG
CTGAATTGTTTTGTACATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC
TCCTTCTGAAAAAATTTGAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
AAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAACGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGAATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCG
ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGCAGTGCCCGCCCGCCCACCCGCTCGTTTC
ATCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAACAGAGGGTTGCGC
AGCAGGATCGACAGCACACTGAGGGAGACCCAGTCGATCCCCAACTTGCGCATCCTGTCCCTCTG
GCCGACTGAGCACCCGCACGCTCATTTCATTGGTTGACTTAAGCATACAAAGTTCATTCCCAGTC
TAGACGACCGGACCAACAGGGTTACG
Found at i:28776 original size:59 final size:58
Alignment explanation
Indices: 28690--29002 Score: 398
Period size: 59 Copynumber: 5.3 Consensus size: 58
28680 CTCAAAAATA
* * * * * **
28690 TTTTGGAAACTTTGATTTTCAACGAAAATTGATACTTTTAACTTTTCCTCAAAAACCTTT
1 TTTTTGAAA-TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTT
*
28750 TTTTTGAAATTTTATTTTTAAGGAAAATAGATACTTTCAACTTTTTCCCAAAAATATTT
1 TTTTTGAAATTTTATTTTTAAGGAAAATTGATACTTTCAAC-TTTTCCCAAAAATATTT
* * * *
28809 TTTTGGAAACTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCTCAAAAACT-TTT
1 TTTTTGAAA-TTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCC-CAAAAA-TATTT
*
28869 ATTTTGAAATTTTATTTTTAAGGAAAATTGATACTTTCAACCTTTTCCCAAAAATATTT
1 TTTTTGAAATTTTATTTTTAAGGAAAATTGATACTTTCAA-CTTTTCCCAAAAATATTT
28928 TTTTTGGAAA-TTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTT
1 TTTTT-GAAATTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTT
*
28987 TTTTTG-ATTTTTATTT
1 TTTTTGAAATTTTATTT
29003 AAAGAAAATA
Statistics
Matches: 224, Mismatches: 20, Indels: 20
0.85 0.08 0.08
Matches are distributed among these distances:
57 1 0.00
58 17 0.08
59 136 0.61
60 69 0.31
61 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.47
Consensus pattern (58 bp):
TTTTTGAAATTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCAAAAATATTT
Found at i:28822 original size:119 final size:119
Alignment explanation
Indices: 28690--29002 Score: 483
Period size: 119 Copynumber: 2.6 Consensus size: 119
28680 CTCAAAAATA
* *
28690 TTTTGGAAACTTTGATTTTCAACGAAAATTGATACTTTTAACTTTTCCTCAAAAACCTTTTTTTT
1 TTTTGGAAACTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CTTTTTTTT
*
28755 GAAATTTTATTTTTAAGGAAAATAGATACTTTCAACTTTTTCCCAAAAATA-TTT
65 GAAATTTTATTTTTAAGGAAAATAGATACTTTCAACCTTTTCCCAAAAATATTTT
*
28809 TTTTGGAAACTTTGATTTTCAAGGAAGATTGATACTTTCAACTTTTCCTCAAAAACTTTTATTTT
1 TTTTGGAAACTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTT-TTTT
*
28874 GAAATTTTATTTTTAAGGAAAATTGATACTTTCAACCTTTTCCCAAAAATATTTT
65 GAAATTTTATTTTTAAGGAAAATAGATACTTTCAACCTTTTCCCAAAAATATTTT
* *
28929 TTTTGGAAA-TTT-ATTTTTAAGGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTT
1 TTTTGGAAACTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTC-AAAAA-CTTTTTTT
*
28991 TG-ATTTTTATTT
64 TGAAATTTTATTT
29003 AAAGAAAATA
Statistics
Matches: 181, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
117 10 0.06
118 47 0.26
119 112 0.62
120 12 0.07
ACGTcount: A:0.32, C:0.12, G:0.08, T:0.47
Consensus pattern (119 bp):
TTTTGGAAACTTTGATTTTCAAGGAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTG
AAATTTTATTTTTAAGGAAAATAGATACTTTCAACCTTTTCCCAAAAATATTTT
Found at i:29017 original size:5 final size:5
Alignment explanation
Indices: 29007--29099 Score: 70
Period size: 5 Copynumber: 18.6 Consensus size: 5
28997 TTATTTAAAG
*
29007 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
* * *
29056 AAAGA- AAAGT AAAACA AAAAT AAAAT AATAA- ATAAT AAAAT AAA
1 AAA-AT AAAAT AAAA-T AAAAT AAAAT AA-AAT AAAAT AAAAT AAA
29100 GGTAAAAAGG
Statistics
Matches: 70, Mismatches: 8, Indels: 20
0.71 0.08 0.20
Matches are distributed among these distances:
3 3 0.04
4 6 0.09
5 48 0.69
6 9 0.13
7 4 0.06
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:29056 original size:26 final size:24
Alignment explanation
Indices: 29007--29083 Score: 68
Period size: 26 Copynumber: 3.1 Consensus size: 24
28997 TTATTTAAAG
* * *
29007 AAAATAAAAT-AATAAAACAAAAT
1 AAAAGAAAATAAAAAAAATAAAAT
29030 AAAAGTGAAAATAAAAAAAATAAAAT
1 AAAA--GAAAATAAAAAAAATAAAAT
29056 -AAAGAAAAGTAAAACAAAAATAAAAT
1 AAAAGAAAA-T-AAA-AAAAATAAAAT
29082 AA
1 AA
29084 TAAATAATAA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
23 9 0.20
24 1 0.02
25 11 0.25
26 22 0.50
27 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.05, T:0.14
Consensus pattern (24 bp):
AAAAGAAAATAAAAAAAATAAAAT
Found at i:29064 original size:30 final size:31
Alignment explanation
Indices: 29006--29075 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 31
28996 TTTATTTAAA
* *
29006 GAAAAT-AAAATAATAAAACAAAATAAAAGT
1 GAAAATAAAAAAAATAAAACAAAAGAAAAGT
*
29036 GAAAATAAAAAAAATAAAA-TAAAGAAAAGT
1 GAAAATAAAAAAAATAAAACAAAAGAAAAGT
*
29066 -AAAACAAAAA
1 GAAAATAAAAA
29076 TAAAATAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 9 0.26
30 15 0.43
31 11 0.31
ACGTcount: A:0.77, C:0.03, G:0.07, T:0.13
Consensus pattern (31 bp):
GAAAATAAAAAAAATAAAACAAAAGAAAAGT
Found at i:29087 original size:29 final size:30
Alignment explanation
Indices: 29012--29075 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
29002 TAAAGAAAAT
* * * *
29012 AAAATAATAAAACAAAATAAAAGTGAAAATA
1 AAAAAAATAAAA-TAAAGAAAAGTGAAAACA
29043 AAAAAAATAAAATAAAGAAAAGT-AAAACA
1 AAAAAAATAAAATAAAGAAAAGTGAAAACA
29072 AAAA
1 AAAA
29076 TAAAATAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 9 0.31
30 9 0.31
31 11 0.38
ACGTcount: A:0.78, C:0.03, G:0.06, T:0.12
Consensus pattern (30 bp):
AAAAAAATAAAATAAAGAAAAGTGAAAACA
Found at i:29137 original size:4 final size:4
Alignment explanation
Indices: 29130--29165 Score: 58
Period size: 4 Copynumber: 9.5 Consensus size: 4
29120 AACCTAATCT
29130 AATA AATA AA-A AATA AATA AATA AAT- AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AA
29166 AAAAACCTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 6 0.20
4 24 0.80
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:29146 original size:11 final size:12
Alignment explanation
Indices: 29130--29165 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
29120 AACCTAATCT
29130 AATAAATAAA-A
1 AATAAATAAATA
29141 AATAAATAAATA
1 AATAAATAAATA
29153 AAT-AATAAATA
1 AATAAATAAATA
29164 AA
1 AA
29166 AAAAACCTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (12 bp):
AATAAATAAATA
Found at i:29148 original size:15 final size:15
Alignment explanation
Indices: 29130--29170 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
29120 AACCTAATCT
29130 AATAAATAAAAAATA
1 AATAAATAAAAAATA
*
29145 AATAAATAAATAATA
1 AATAAATAAAAAATA
29160 AATAAA-AAAAA
1 AATAAATAAAAA
29171 CCTGAAGCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (15 bp):
AATAAATAAAAAATA
Found at i:30089 original size:23 final size:21
Alignment explanation
Indices: 29999--30124 Score: 75
Period size: 20 Copynumber: 6.0 Consensus size: 21
29989 AAAAAAGAAA
* *
29999 AAAAAATAATAATCAGATAAAC
1 AAAAAATAA-AATAAGATAAAT
* * * *
30021 GAAAAAGAAAA-AATAAAAAT
1 AAAAAATAAAATAAGATAAAT
30041 AAAAAA-AATAATAACAGAT-AAT
1 AAAAAATAA-AAT-A-AGATAAAT
30063 AAAAAATAAAATAAGATAAAT
1 AAAAAATAAAATAAGATAAAT
** *
30084 CCAAAAAATATTACAAGATAAA-
1 --AAAAAATAAAATAAGATAAAT
30106 AAAAAAT-AAATAA-ATAAAT
1 AAAAAATAAAATAAGATAAAT
30125 TATACTATAA
Statistics
Matches: 80, Mismatches: 15, Indels: 21
0.69 0.13 0.18
Matches are distributed among these distances:
18 5 0.06
19 5 0.06
20 23 0.29
21 6 0.08
22 20 0.25
23 21 0.26
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.17
Consensus pattern (21 bp):
AAAAAATAAAATAAGATAAAT
Found at i:30090 original size:43 final size:41
Alignment explanation
Indices: 29997--30124 Score: 118
Period size: 43 Copynumber: 3.0 Consensus size: 41
29987 CAAAAAAAGA
* *
29997 AAAAAAAATAATAATCAGATAAACGAAAAAGAAAA-AATAAAAAT
1 AAAAAAAATAATAA-CAGATAAA--AAAAATAAAATAA-ATAAAT
30041 AAAAAAAATAATAACAGATAATAAAAAATAAAATAAGATAAAT
1 AAAAAAAATAATAACAGATAA-AAAAAATAAAATAA-ATAAAT
** *
30084 CCAAAAAAT-ATTACAAGATAAAAAAAA-ATAAATAAATAAAT
1 AAAAAAAATAATAAC-AGATAAAAAAAATA-AAATAAATAAAT
30125 TATACTATAA
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
41 7 0.09
42 25 0.34
43 27 0.36
44 15 0.20
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.17
Consensus pattern (41 bp):
AAAAAAAATAATAACAGATAAAAAAAATAAAATAAATAAAT
Found at i:30270 original size:16 final size:16
Alignment explanation
Indices: 30251--30289 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
30241 TAAAATGCCT
30251 AAAATACAAAAAAATA-
1 AAAATA-AAAAAAATAC
*
30267 AAAATAAAAATAATAC
1 AAAATAAAAAAAATAC
30283 AAAATAA
1 AAAATAA
30290 GAATCGAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAATAAAAAAAATAC
Found at i:30469 original size:19 final size:18
Alignment explanation
Indices: 30445--30482 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
30435 AACATTTTCA
30445 TTTTTTGGTTTTTGTGTTT
1 TTTTTTGGTTTTTGT-TTT
*
30464 TTTTTTTGTTTTTGTTTT
1 TTTTTTGGTTTTTGTTTT
30482 T
1 T
30483 GACCAAAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (18 bp):
TTTTTTGGTTTTTGTTTT
Found at i:30585 original size:42 final size:42
Alignment explanation
Indices: 30490--30622 Score: 205
Period size: 42 Copynumber: 3.1 Consensus size: 42
30480 TTTGACCAAA
* *
30490 GCTCCTCTAAACAGAGGCTCAACGAC-TTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTG-GAAA-ATAAATT
*
30533 GCTCCTCTAAACAGAGGCACCATGACTTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
*
30575 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
30617 GCTCCT
1 GCTCCT
30623 TGACAAACAT
Statistics
Matches: 84, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
42 53 0.63
43 27 0.32
44 4 0.05
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATT
Found at i:31655 original size:7 final size:8
Alignment explanation
Indices: 31643--31721 Score: 70
Period size: 8 Copynumber: 9.0 Consensus size: 8
31633 TTCACTTCTT
31643 TTTTTTC-
1 TTTTTTCA
31650 TTTTTTCA
1 TTTTTTCA
31658 TTTTTTCA
1 TTTTTTCA
31666 TTTTTTTCATCA
1 --TTTTT--TCA
31678 TTTTTTCA
1 TTTTTTCA
31686 TTTTTTTCA
1 -TTTTTTCA
31695 TTTTTTTCA
1 -TTTTTTCA
*
31704 CCTTTTTTTA
1 --TTTTTTCA
31714 TTTTTTCA
1 TTTTTTCA
31722 AGCATAGTAT
Statistics
Matches: 62, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
7 7 0.11
8 18 0.29
9 17 0.27
10 17 0.27
12 3 0.05
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTTTCA
Found at i:31655 original size:8 final size:9
Alignment explanation
Indices: 31642--31719 Score: 92
Period size: 9 Copynumber: 8.7 Consensus size: 9
31632 ATTCACTTCT
31642 TTTTTTTC-
1 TTTTTTTCA
31650 -TTTTTTCA
1 TTTTTTTCA
31658 -TTTTTTCA
1 TTTTTTTCA
31666 TTTTTTTCA
1 TTTTTTTCA
31675 TCATTTTTTCA
1 T--TTTTTTCA
31686 TTTTTTTCA
1 TTTTTTTCA
31695 TTTTTTTCA
1 TTTTTTTCA
31704 CCTTTTTTT-A
1 --TTTTTTTCA
31714 TTTTTT
1 TTTTTT
31720 CAAGCATAGT
Statistics
Matches: 64, Mismatches: 0, Indels: 12
0.84 0.00 0.16
Matches are distributed among these distances:
7 7 0.11
8 14 0.22
9 26 0.41
10 1 0.02
11 16 0.25
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:31683 original size:29 final size:27
Alignment explanation
Indices: 31650--31721 Score: 108
Period size: 29 Copynumber: 2.6 Consensus size: 27
31640 CTTTTTTTTC
31650 TTTTTTCATTTTTTCATTTTTTTCATCA
1 TTTTTTCATTTTTTCATTTTTTTCA-CA
*
31678 TTTTTTCATTTTTTTCATTTTTTTCACC
1 TTTTTTCA-TTTTTTCATTTTTTTCACA
*
31706 TTTTTTTATTTTTTCA
1 TTTTTTCATTTTTTCA
31722 AGCATAGTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
27 8 0.20
28 16 0.39
29 17 0.41
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (27 bp):
TTTTTTCATTTTTTCATTTTTTTCACA
Found at i:31709 original size:20 final size:18
Alignment explanation
Indices: 31642--31719 Score: 92
Period size: 20 Copynumber: 4.3 Consensus size: 18
31632 ATTCACTTCT
31642 TTTTTTTC--TTTTTTCA
1 TTTTTTTCATTTTTTTCA
31658 -TTTTTTCATTTTTTTCA
1 TTTTTTTCATTTTTTTCA
31675 TCATTTTTTCATTTTTTTCA
1 T--TTTTTTCATTTTTTTCA
31695 TTTTTTTCACCTTTTTTT-A
1 TTTTTTTCA--TTTTTTTCA
31714 TTTTTT
1 TTTTTT
31720 CAAGCATAGT
Statistics
Matches: 55, Mismatches: 0, Indels: 11
0.83 0.00 0.17
Matches are distributed among these distances:
15 7 0.13
17 8 0.15
18 8 0.15
19 7 0.13
20 25 0.45
ACGTcount: A:0.10, C:0.13, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTTTTCATTTTTTTCA
Found at i:42665 original size:32 final size:30
Alignment explanation
Indices: 42628--42688 Score: 77
Period size: 33 Copynumber: 1.9 Consensus size: 30
42618 CACAACCTCA
*
42628 AAAAAAGAAAAAATAATAATAATCAGATAAATG
1 AAAAAA-ATAAAA-AATAATAA-CAGATAAATG
42661 AAAAAAATTAAAAAATAATAACAGATAA
1 AAAAAAA-TAAAAAATAATAACAGATAA
42689 TCAAAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
31 7 0.27
32 9 0.35
33 10 0.38
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.18
Consensus pattern (30 bp):
AAAAAAATAAAAAATAATAACAGATAAATG
Found at i:42717 original size:43 final size:44
Alignment explanation
Indices: 42670--42754 Score: 104
Period size: 43 Copynumber: 2.0 Consensus size: 44
42660 GAAAAAAATT
**
42670 AAAAAATAATAAC-AGATAATCAAAAAT-A-AAATAAGATAAATCC
1 AAAAAAT-ATAACAAGATAAAAAAAAATAATAAATAA-ATAAATCC
*
42713 AAAAAATATTACAAGATAAAAAAAAATAATAAATAAATAAAT
1 AAAAAATATAACAAGATAAAAAAAAATAATAAATAAATAAAT
42755 TATAATATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
42 4 0.11
43 19 0.53
44 7 0.19
45 6 0.17
ACGTcount: A:0.71, C:0.06, G:0.04, T:0.20
Consensus pattern (44 bp):
AAAAAATATAACAAGATAAAAAAAAATAATAAATAAATAAATCC
Found at i:42790 original size:26 final size:25
Alignment explanation
Indices: 42731--42808 Score: 70
Period size: 26 Copynumber: 3.1 Consensus size: 25
42721 TTACAAGATA
* *
42731 AAAAAAAATAATAAATAAATAAATT
1 AAAAATAATAATAAATATATAAATT
* *
42756 ATAATATAATAATAAATATATAACTAT
1 A-AAAATAATAATAAATATATAAAT-T
*
42783 AAAAATAA-AATACATATA-AATATT
1 AAAAATAATAATAAATATATAA-ATT
42807 AA
1 AA
42809 CAAAACAAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
24 5 0.12
25 11 0.26
26 25 0.58
27 2 0.05
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (25 bp):
AAAAATAATAATAAATATATAAATT
Found at i:42905 original size:6 final size:6
Alignment explanation
Indices: 42883--42919 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
42873 TAAAATGCCT
42883 AAAATA CAAAA-A AAAATA AAAATA AAAATA AAAATA A
1 AAAATA -AAAATA AAAATA AAAATA AAAATA AAAATA A
42920 TACAAAATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
5 4 0.14
6 21 0.72
7 4 0.14
ACGTcount: A:0.84, C:0.03, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:43298 original size:21 final size:21
Alignment explanation
Indices: 43272--43318 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
43262 ATGAAAAATA
43272 GAAAACGAGTCGTCTTGCCAT
1 GAAAACGAGTCGTCTTGCCAT
43293 GAAAACGAGTCGTCTTGCCAT
1 GAAAACGAGTCGTCTTGCCAT
43314 GAAAA
1 GAAAA
43319 TTCACATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.21
Consensus pattern (21 bp):
GAAAACGAGTCGTCTTGCCAT
Found at i:44565 original size:26 final size:26
Alignment explanation
Indices: 44536--44588 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
44526 GTTGACTTTG
* * * *
44536 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCACAATCTAA
*
44562 GCATGCAGAGTTAATTCACAATCTAA
1 GCATACAGAGTTAATTCACAATCTAA
44588 G
1 G
44589 ATCGCATCGG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCACAATCTAA
Found at i:47484 original size:877 final size:871
Alignment explanation
Indices: 43001--48116 Score: 6281
Period size: 869 Copynumber: 5.8 Consensus size: 871
42991 GGTGTCTACA
*
43001 ATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
43066 GCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCCTATACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
** *
43131 CTTCGAGTTTTTAGCTGAGGTTTTTTGTGCATGCCCACAAAAATACAAGGATCACGTCTACCAAG
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
43196 TTTTGGGCCAAAACTCCTTCT-AAAAAAATTTAAAAAAATCTTGAATCGTAAAAAGTTTCAAAAA
196 TTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
43260 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAACGAGTCGTCTTGCCATGAAAATTCACA
261 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATG--AA--A----------C-------TTCACA
** * *
43325 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAAAAAT
305 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAAT
* * *
43390 ATGAAGATGTTCCTAAACCCACCTACCA-CGCTATTGATCCACGGCTTGCGCATCCCGCCTCTTT
370 ATGAAGATGTGCCTAAACCCACCTACCACCG-TATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * * * * * *
43454 GGGCGACGCAGTGCTCGCCTGCCCACCCGCTCCTTTCGTCGGTTGCCTTAGGCTTACGGAGTTCA
434 GGCCGACGTAGTGC-CGCC-GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCA
* * * * * * * * *
43519 TTCC-CGATCTAAGATTAGATCGGACCGAGGGTTGCGGCAGCATGATCGGTAGCACGCTAAGAGG
497 TTCCTAG-TCTAAGATCAGACCAGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCTGAGGGG
* * * *
43583 GACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCAGCGCGCTCGTT
561 GACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * * *
43648 TCGTGGGTTGACTTAGGCATATGAAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTGC
626 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGC
* *
43713 GGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTGCCCGGGGCACCATCGTT
691 GGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTGCCCGGGCCACCATCGTC
* * * * * * * *** * *
43778 GGAGCATCGTCGGAGAACCTAACCGACGACATTAGGGTTCCAGTGACAAGGGGGCTGGGGGTGTG
756 GGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGCCGGGGGGGTG
*
43843 CGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
821 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
43894 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
43959 GGCAGTAGCTATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * * *
44024 CTTCGAGTTTTTAGCTGAATTTTATTGTGCATGCCCACAAAAATACAAGGATCATGTCAACCAAG
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
44089 TTTGGGGCCAAAACTCATTTTGAAAAAA-TTAAAAAAAATC-CTGAACCGTAAAAAGTTTCAAAA
196 TTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAA
* * *
44152 ATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGCACCATT
260 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
** * *
44217 GTATGAATTTACAAGCCATAAAAATTCCATTGGCGTGGCAGAAATATGAAGATGTGCCTAAACCC
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCC
* *
44282 ACCTACCACCCTATCAATCCACGGCTTGCGCATCCCGCCTCTCTGGCC-AGCGTAGTGCCCGCCC
390 ACCTACCACCGTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGTG-CCG-CC
* * *
44346 GCCCGCCCGCTCCTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCTGAC
452 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
* * * * ** * * * **
44411 CGGACCGATGGTTACGACAGCAGGATCAACAGCAC-ATCGAGGGGGACTCAACCGATCCCCCACT
517 CAGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCT-GAGGGGGACCCGACCGATCCCCGGCT
* * * * *
44475 TGCGAATCCTACCCCTCTGGCCGGCTGAGCGCCCGTACGCTCCTTTCGTGGGTTGACTTTGGCAT
581 TGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
44540 ACGGAGTTCATTCCCAGTCTAAGCATGCAGAGTTAATTCACAATCTAAGATCGCATCGGATCAAG
646 ACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G----------ATC--AGA---C-T--G----AG
* * * * * * *
44605 GGTTGTGGGTGTACATGCTTGGCTCGGGCATGTGCTGGAGCCGCATTTGTTTT-CACTCGGGGCA
685 GGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTGC-C-CGGGCCA
* *
44669 CCA---TC---G--TCG---GAGAACCTGACCGACGACATTGGGGTTCCGACGATTGGGGGGGCC
748 CCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATT-GGGGGGCC
*
44723 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
812 GGGGGG-GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
44784 AGCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
44849 GCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCCTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * * *
44914 CTTCGCGTTTTGAGCTAAATTTTTTTGTGCATACCCAA-AAAAATACAAGGATCACGTCTACCAA
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGATCACGTCTACCAA
* *
44978 GTTTGGGGCCAAAAATCCTTCT-AAAAAA-TTAAAAAAAATCTTGAACCGTAAAAAGTTTCAAAA
195 GTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * **
45041 ATCATGAAAAACAGAAAACGAGTCGTCTTACTGTGAAACTTCACATGAAGGCTTAAGGGACCATT
260 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
45106 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCC
325 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCC
**
45171 ACCTACCACC-TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCGCCTG
390 ACCTACCACCGTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTG-CCGCC-G
* * * * *
45235 CCCGCCCGCTCATTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAAATCAGACT
453 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC
* * * * * **
45300 GGACC-AAGGGCTGCGGCAACAGGATCAGCAGCACGCTAAGGGGCTCCCGACCGATCCCCGGCTT
518 AGACCGAA-GGTTGCGGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTT
* * *
45364 GCGCATCCTGCCCCACTGGCCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATA
582 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * ** * * * ***
45429 CAGAGTTCATTCCCAGTCTAAGATCAGATCAGACTGATAGTTACGAGTGCACATGCTAGGCTTTA
647 CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGGTGCACATGCTGGGCTCGG
** * * *
45494 GCATGTGCTGGTGCCACATTTTTTTTTCGTTCGGGCCACCATCGTCGAAGTATCGCCTGAGAACC
712 GCATGTGCTGGTGCCACA-TTTTTTTT-GCCCGGGCCACCATCGTCGGAGCATCGCCAGAGAACC
* ** * * * *
45559 TAACCGACGGCAATT-GGGTTCCGATGATTGGGGGGCTGGGGGGTGTGTGCACATGATGTGTGAA
775 TGACCGACGGC-ATTGGGGTTCCGGCGATTGGGGGGCCGGGGGG-GTGCGCACATGATGTGCGAT
* *
45623 GGGTGTTGGTACTTGGCCCTTATATTGGCCACCT
838 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
** ** *
45657 ATCCCTCATCAAACCTCGAGAACTCACAGTCCCTTAAAGAAAATTTGAGTTTTTACAGGTTTGCT
1 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
45722 GCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * *
45787 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACGAAG
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
45852 TTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTCAAATCGTAAAAAGTTTCAAAAA
196 TTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
* * *
45917 TCATAAAAAATAGAAAATGAGTCGTCTTGCCAAGAAACTTCACATGAAGGCTTAAGGGACCATTG
261 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
45982 TATGAATTTACAAGCCATTAAAATGGCATTGGCTTGGTAGAAATATGAAGATGTGCCTAAACCCA
326 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCA
* * * *
46047 CCTACCACCGTATCGATCCACGGCTTGCACATCCTGCCTCTCTGGCCGGCGTAGT------GCCT
391 CCTACCACCGTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCGCCGCCC
* * * *
46106 GCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCATACCAAA
456 GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGA
* * * * * * * * *
46171 CCGAGGGCTGCGACAGTAGGATTGGAAGCACGCTGAGGGGGACCC-AGTCGATCCCTGGCTTGTG
521 CCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGA-CCGATCCCCGGCTTGCG
* *
46235 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATATGG
585 CATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
* * ** *
46300 AGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTATGGGTGCACATGCTGGGATCGGGC
650 AGTTCATTCCCAGTCTAAGATCGGATC-AGACTGAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
* * *
46364 ATGTGCTGGTGCCACATTTTTTTTCACCCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGA
714 ATGTGCTGGTGCCACATTTTTTTT-GCCCGGGCCACCATCGTCGGAGCATCGCCAGAGAACCTGA
* * *
46429 CAGGCGGCATTGGGGTTCCAGCGATTAGGGGGGCCGGGGTGGTGTGCGCACATGATGTGCGATGG
778 CCGACGGCATTGGGGTTCCGGCGATT-GGGGGGCCGGGG-GG-GTGCGCACATGATGTGCGATGG
* * *
46494 GTTCTTGTACTTGGCCCTTATATTGGCCCCAT
840 GTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
46526 ATCCCTCATCAAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATCTT-AGATTTTACAGGTTTG
1 ATCCCTCATC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCAT-TTGAGATTTTACAGGTTTG
* * *
46589 CTACCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCGTGTA
64 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
*
46654 CACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
129 CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
** * *
46719 AGTTTGGGGCCAAAACCCCTTTTGAAAAAATTTTAAAAAAATCTGGAACCGTAAAAAGTTTCAAA
194 AGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAA
* * * * * * *
46784 AATCATGAAAAATAAAAAATGAGTCATCTTGCCATGGAACTTCAAATCAAGGCTTAAGGGACCAC
259 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* * * *** *
46849 TGCATTAATTTATAAGCCATAAAAATGGCATTGGCACCATAGAAATATGGAGATGTGCCTAAACC
324 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACC
* * *
46914 CACCTACCACCGTAAT-GATCCACGGCTTCCGCATCTCGCCTCTCTGGCCGACGTAGTACCTGCT
389 CACCTACCACCGT-ATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCC-GC-
* ** *
46978 CGCCCGCCCGCTCGTTTCGTCAATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAA
451 CGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGA
* ** *
47043 CCAGACTGAAGGTTGTAGCAGCAGGATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGGCT
516 CCAGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCT
* * *
47108 TGCGCATCCTGCCCTTCAGGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
581 TGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * *
47173 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACTGAGGGTTGCGGGTGCACATGCTAGGCTTG
646 ACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGGTGCACATGCTGGGCTCG
* * * * * * *
47238 AGCCTTTGCTGGTGTCACATTTTTTTTGCCCGGGCCGCCATCGCCGGAGCATCGCCAGA-AATAC
711 GGCATGTGCTGGTGCCACATTTTTTTTGCCCGGGCCACCATCGTCGGAGCATCGCCAGAGAA-CC
* * *
47302 TGACCGACGGTATTGGGGTTACGGCAATTGGAGGGGCCGAGGGGGGCATGCGCACATGATGTGCG
775 TGACCGACGGCATTGGGGTTCCGGCGATTGG-GGGGCCG-GGGGGG--TGCGCACATGATGTGCG
47367 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
836 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* ** * *
47403 ATCCCTCATCAAACCTCGAGACCTCACACCCCCCGATAGAGCATTTGAGATTTTACAGTTTTGCT
1 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
47468 GCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACA
66 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * *
47532 CTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACGAGGATCATGTCTACCAAG
131 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* *
47597 TTTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAAATCTCGAACAGTAAAAAGTTTCAAAAA
196 TTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
*
47662 TCGTGAAAAATAGAAAACGAGTCGTCTTG-CATGAAACTTCACCATG-AGGCTTAAGGGACCACT
261 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA-CATGAAGGCTTAAGGGACCA-T
** *
47725 TGTAATGGAATTTACAAGCCATAAAAAAAGCATTGGGCATGGCAGAAATATGAACGATGT-CCTA
324 TGT-AT-GAATTTACAAGCCATAAAAATGGCATT-GGCATGGTAGAAATATGAA-GATGTGCCTA
* * **
47789 AACCCACCTACCACCCCTATCGATCCATGGCTTGGCGCATCCCCAGCCTCTCTGGCCGGTGTAGT
385 AACCCACCTACCA-CCGTATCGATCCACGGCTT-GCGCAT-CCC-GCCTCTCTGGCCGACGTAGT
* ** * * * *
47854 GCCG-CGCCTGCCCGCTCGTTTCATCATTTGGCTT-GGAATACAGAGTTAAATTCCCAGTCTAAG
446 GCCGCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTT-CATTCCTAGTCTAAG
* * * **
47917 ATCAGACCAGACC-AAGGGTTGCGGCAGTAGGATCGGTAGCACGCTGAGGGGGACCTGGTCGATC
510 ATCAGACCAGACCGAA-GGTTGCGGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATC
* * * * * * * *
47981 CCGGGCTTTCGCATCCTGCCCCTCTGGCTGGCTGAGCACCCACACGCTTGTTTCGTGGTTTGATT
574 CCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* ** * *
48046 TAGGCATACGGAGTTCATTTCCAGTCTAAGATCATACCAGA-TCGAGGGTTGTGGGTGCACATGC
639 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACT-GAGGGTTGCGGGTGCACATGC
48110 TGGGCTC
703 TGGGCTC
48117 AGGAGTATCG
Statistics
Matches: 3680, Mismatches: 440, Indels: 219
0.85 0.10 0.05
Matches are distributed among these distances:
862 35 0.01
863 16 0.00
866 6 0.00
867 59 0.02
868 242 0.07
869 431 0.12
870 21 0.01
871 5 0.00
872 318 0.09
873 264 0.07
874 38 0.01
875 197 0.05
876 285 0.08
877 391 0.11
878 25 0.01
879 48 0.01
880 225 0.06
881 5 0.00
882 3 0.00
883 20 0.01
884 1 0.00
886 3 0.00
887 5 0.00
888 261 0.07
889 181 0.05
890 247 0.07
891 9 0.00
893 270 0.07
894 7 0.00
896 1 0.00
897 1 0.00
898 50 0.01
899 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCGTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCGCCGCCC
GCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGA
CCGAAGGTTGCGGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGC
ATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCACATTTTTTTTGCCCGGGCCACCATCGTCGGAGCATCGCCAGAGAACCTGACCG
ACGGCATTGGGGTTCCGGCGATTGGGGGGCCGGGGGGGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCT
Found at i:48912 original size:26 final size:26
Alignment explanation
Indices: 48883--48961 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
48873 GTTGACTTAG
*
48883 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
48909 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
48935 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
48961 G
1 G
48962 ATCAGACCGA
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:50151 original size:26 final size:26
Alignment explanation
Indices: 50114--50166 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
50104 GTTGACTTAG
*
50114 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
*
50140 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
50166 G
1 G
50167 ATAGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:51035 original size:26 final size:26
Alignment explanation
Indices: 51001--51053 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
50991 GTTGACTTAG
51001 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
51027 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
51053 G
1 G
51054 ATTGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:51940 original size:26 final size:26
Alignment explanation
Indices: 51910--51962 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
51900 GTTGACTTAG
51910 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
51936 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
51962 G
1 G
51963 ATTGGATCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:52503 original size:897 final size:894
Alignment explanation
Indices: 49242--55038 Score: 6620
Period size: 897 Copynumber: 6.5 Consensus size: 894
49232 GTTGATTTAG
* * * * *
49242 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAAGGTT-CTGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGC-GGGTGCACATGCTGG
* * ** * * * * *
49306 GTTCGGGCATGTGCTAGTGCTGCA-TTTTTTTCGCCCGGGTCACCATCGTCTGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCAGGCCACCATCGCCGGAGCATCGTCGAA
* * * **
49370 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATT-GGGGGGCCGGGGGGTGTGTGCACATGATGT
130 GAACTTGACCGACGGCATTGGGGTTCCGTCGATTGGGGGGGCCGGGGGGTGTGCACACATGATGT
* * * * **
49434 ACGATGGGTGCTGGAACTTGGCCCTTATATTCGCCCGCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCA
* *
49499 CACCCCCTTAAAGAGCATTTGTGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
49564 TGGGGAAACTTTTTTCAAATGGTCCCAAAATCCTGTACACTTCTAGTTTTTAGTTGAATTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
49629 TTGCATGCTAACAAAAATACAAGGATAACGTCTACCAAGTTTGGCGCCAAAACCCCTTCTGAAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCTTCTGGAAA
*
49694 AAGTTTAAAAAAATCCTGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AATTTTAAAAAAATCCTGAACCGTAAAA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
49759 TTGCCATGAAACTTCACATGATGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
49824 CATTGGCACAGCAGAAACATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTT
583 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
49889 GCG-ATTCCGTCTCTCTGGCCGACGTAGTGCCAGCTCGCCCGCCCACTCGTTTCGTCGGTTGGCT
648 GCGCATCCCGCCTCTCTGGCCGACGTAGTG-C--C-CGCCCGCCCACTCGTTTCGTCGGTTGGCT
* * * * * * * **
49953 TAGGCATACTGAGTTCATTCCCAGTCTAAGATCAAATCGGACTGAGGGTTGTGGCAATAGGATCG
709 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTATGGTAGCAGGATCG
* ** * * ** * * * *
50018 GCAGCATGCTGAGGGGGACCCGTCGATCCCCCGCTTGCACATCCTACCCCTTTAGTCGGCTGAGC
774 GCAGCACGCAAAGGGGGACCGGCCGATCCCAGGCTTGCGCATCCTGCCCCTCT-GGCGGCTGAGC
* * * * * *
50083 ACCTGCCCGCTCGTTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
838 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
50140 GCATACGGAGTTCATTCCCAGTATAAGATAGGACCAGACCGAGGGTTACGGGTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* **
50205 CTCGGGCATGTACTGGTGCCGTA-TTTTTTTCGCCC-GGCCACCAT---C--A-C--CGT---AG
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCAGGCCACCATCGCCGGAGCATCGTCGAAG
* * * * * * * * *
50257 AACCTAACCGACGACATTAGGGTTTCGGT-GATTAGGGGGGCTGGGGGGTGTGCACAAATGTTGT
131 AACTTGACCGACGGCATT-GGGGTTCCGTCGATTGGGGGGGCCGGGGGGTGTGCACACATGATGT
*
50321 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCAC-ATATCCCTCATCAAACCTTGAGAACTC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CTCTATCCCTCATCAAACCTTGAGAACTC
* * *
50385 ACACCCCCTTAAAGACCATTTGAGATTTTACAAGTTTGCCGCCAGTAGCCATTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
50450 ATGGGG-CACTTGTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTCTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
50514 TATGCATGCCCACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-GAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTCTGGAA
* * *
50578 AAAATTAAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGT
453 AAATTTTAAAAAAATCCTGAACCGT-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
50643 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATA
517 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
50708 GCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
582 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
50773 TGCGCATCCAGCCTCTCCGACCGACGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
647 TGCGCATCCCGCCTCTCTGGCCGACGTA--G-T-GCCCGCCCGCCCACTCGTTTCGTCGGTTGGC
* * *
50838 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTTTGGCAGCAGGATC
708 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTATGGTAGCAGGATC
* * * * *
50903 GGCAACACGCAGAGGGGGAACCCGACCGATCCTC-GGCTTACGCATCCT-ACCCTCTGGCCGGCT
773 GGCAGCACGCAAAGGGGG-A-CCGGCCGATCC-CAGGCTTGCGCATCCTGCCCCTCTGG-CGGCT
50966 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 GAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
51027 GCATGCGGAGTTCATTCCCAGTCTAAGATTGGACTAGACCGAGGGTTGTGGGTGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
51092 CTCGAGCACGTACT-GTAGCCACATTTTTGTTT-GCCC-GAGCCACCATCGTCAGAGCATCGCCG
66 CTCGGGCATGTGCTGGT-GCCACATTTTT-TTTCGCCCAG-GCCACCATCGCCGGAGCATCGTCG
* * * * *
51154 GAGAACTTGATCGGCGGCATTGGGGATACGGT-GATT-GGGGGGCCGGGGAGGTGTGTC-CACAT
128 AAGAACTTGACCGACGGCATTGGGG-TTCCGTCGATTGGGGGGGCCGGGG-GGTGTG-CACACAT
* * * *
51216 GATGTGCGATGGGTGCTGCTAGTTGGCCCTCATATATGCCCTTATATTGGCCCCCTGTCCCTCA-
190 GATGTGCGATGGGTGCTG---G-T-----AC-T-T-GGCCCTTATATTGGCCCTCTATCCCTCAT
* * * * * * *
51280 CACACCTCGAGAAATCAAACCCCCTTAAAGAGCATTCGACATTTTACAAGTTTGCTGCCAGTAGC
243 CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* *
51345 CATTAAAGTCTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
308 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* * * *
51410 TTTAGCTGAATTTTTTTGTGCAAGCCAATAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCT
373 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * ** *
51475 AAAACTCTTTCT-GACAAAATTTTAAAAAAATCTTGAATCGTAAAAGGTTTTGAAAATCGTGAAA
438 AAAACTC-TTCTGGA-AAAATTTTAAAAAAATCCTGAACCGTAAAA-GTTTCAAAAATCATGAAA
*
51539 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATAAATT
500 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
* * *
51604 TACAAGCCATAAAAAAGGCATTGGCATGACAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
565 TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
51669 CCTATCAATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGA-GTAGTGCCCGCTCGCCCACTCA
630 CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCACTCG
* * *
51733 TTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTT
694 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTT
* * * * * * *
51798 ACGATAGCAGGATTGACAGCATGCAAAGGGGGACTCGGTCGATCTCAGGCTTGCGCATCCTGCCC
759 ATGGTAGCAGGATCGGCAGCACGCAAAGGGGGAC-CGGCCGATCCCAGGCTTGCGCATCCTGCCC
* *
51863 CTCTGGCAGGCTGAGCACCCGCACGCTCGTTTCATGAGTTGACTTAGGCATACGGAGTTCATTCC
823 CTCTGGC-GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
51928 CAGTCTAA
887 CAGTCTAA
* * * *
51936 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCTGACTGAGGGTTGCGGGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
52001 CTCGGGCATGTGCTGGTGGCACATTTTTTTTCTCCCAAGG-CACCATTGCCCGAGCATCGTCGAA
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCC-AGGCCACCATCGCCGGAGCATCGTCGAA
* * *
52065 GAACCTGACCGACGGCATTGGGGTTCCGTCGATT-GGGGGGCCGGGGGGTGTGCGCAGATGATGT
130 GAACTTGACCGACGGCATTGGGGTTCCGTCGATTGGGGGGGCCGGGGGGTGTGCACACATGATGT
*
52129 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAATCCTTGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCA
*
52194 CACCCCGTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
52259 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTTTGAATTTTTACCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
52324 GGGCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCGTTTTGGAAA
390 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTCTGGAAA
* * * * *
52389 AATTTTAAAAAAATCTTGAATCGTAGAAAGTTTCAAAAATCGTGAAAAATAGAATACGAGTCATC
454 AATTTTAAAAAAATCCTGAACCGTA-AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
52454 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
52519 CATTGGCTTGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
52584 GCGCATCCAGCCTCTCTGGTCGACGTAGTGCTCGCCCG----CTCGTTTCGTCGGTTGGTTTAAG
648 GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
* * * * *
52645 CATACGGAGTTCTTTCCTAGTCTAAGATCAGACCGGACCGATGGTTATGGTAGTAGGATCGGCAG
713 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTATGGTAGCAGGATCGGCAG
** * * * *
52710 CACATAGAGGGGGACTCGACCGATCCCTGGCTTGCGCATCATGCCCCTCTGGTCGGCTGAGCGCC
778 CACGCAAAGGGGGAC-CGGCCGATCCCAGGCTTGCGCATCCTGCCCCTCTGG-CGGCTGAGCGCC
* *
52775 CGCACGTACGCTCATTTCGTGGGTTGAC-TAGGCATACGGAGTTCATTCCCAGTCTAA
841 CG--C--ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*** ** * *
52832 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGTTTGCAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
52897 CTCGGGCATGTGCTGGTGCCTCATTTTTTTTCGCCCAGGCCACCATCGCTGGAGCATCG-CCAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCAGGCCACCATCGCCGGAGCATCGTCGA-A
* *
52961 GAACTTGACC-AGCGGCATTGGGGTTTCGGCGATTGGGGGGGCCGGGGGGTGTGCACACATGATG
130 GAACTTGACCGA-CGGCATTGGGGTTCCGTCGATTGGGGGGGCCGGGGGGTGTGCACACATGATG
* * * * *
53025 TGCAATGGCTGCGGGTACTTGGCCCCTATATTGG-CCTCCTATCCC-CTTCAAAACCTTGAGAAC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCT-CTATCCCTCATC-AAACCTTGAGAAC
* *
53088 TCACACCCCCTT-AAGTGCATTTGAGATTTTACAGGTTCTGCCTGCCAGTAGCCCA-TCAAGTGT
257 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT-TG-CTGCCAGTAG-CCATTAAAGTGT
* * * *
53151 CCTGAAATAGGGATA-GTTTTTCAAATGGTCACAAAAATCCTATACACTTCGAGGTTTTTAGCTG
319 -CTGAAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCCTGTACACTTCGA-GTTTTTAGCTG
* *
53215 AATTTTTTT-TCCATGCCCAACAAAAATAC-AGGATCACGTCTAACCAAGTGTTTGTGGCCAAAA
381 AATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCT-ACCAA--GTTTGGGGCC--AA
* * * *
53278 AATTCCTCT-GAAAAATTTTAGAAAAA-CCTGAACCGTGCAAAAGTTTCAAAAATCGTGAAAAAT
440 AACTCTTCTGGAAAAATTTTAAAAAAATCCTGAACCGT--AAAAGTTTCAAAAATCATGAAAAAT
* * * *
53341 AGAAAACGAGTCATCTTGCCATGAAACTCCACATGAAGGGCTTAAGGGGACCATTG-GTGCATTT
503 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAA-GGCTTAA-GGGACCATTGTATGAATTT
*
53405 ACAAGCCATTAAAAATGGGCTTTGGCATAGGCAG-AATATGAAGATGTGCCTAAACCC-CCTACC
566 ACAAGCCA-TAAAAAT-GGCATTGGCAT-GGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** *
53468 ACCCTATCGATCCACGGCTTGCGCAT-CCGCCTCTCTTGGCCGGTGTAGTGCCTGCCCGCCGTCT
628 ACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC-TGGCCGACGTAGTGCCCGCCCGCC--C-
* * * * *
53532 ACTCGTTCCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACCAA
689 ACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGA
** * * *** *
53597 GGGTTGCGATAGCAGGATCGACAGCACGTTGAGGGGGACCTGGCCGATCCCCA-GCTTGCCCATC
754 GGGTTATGGTAGCAGGATCGGCAGCACGCAAAGGGGGACC-GGCCGAT-CCCAGGCTTGCGCATC
* * *
53661 CTGCCCCTCTGGCCGACTGAGTGCCCGTA----CG-TTC----GTT---TT--G--T--GG-GTT
817 CTGCCCCTCTGG-CGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* *
53707 GA----C--T-TAG
881 CATTCCCAGTCTAA
* *
53714 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
53779 CTCGGCCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCAGGCCACCATCGCCGGAGCATCGTCGAAG
* * * * *
53844 AACTTGATC-AGTGGCATTAGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGT
131 AACTTGACCGA-CGGCATTGGGGTTCCGTCGATTGGGGGGGCCGGGGGGTGTGCACACATGATGT
* *
53908 ACGATGGGTGCTGGTACTTGGCCCTTATATTAG-CCTGCTATCCCTCATCAAACCTTGAGAACTC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCT-CTATCCCTCATCAAACCTTGAGAACTC
* *
53972 ACA--CCC--------C-TTT---A---T--AGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
54018 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
54083 TGTGCATGCCAACAAAAATACAAAGATCACGTCTACCATGTTTGGGGCCAAAACTCTTTCTGAAA
389 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTCTGGAA
* * *
54148 AAATTTTAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGT
453 AAATTTTAAAAAAATCCTGAACCGT-AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
54213 CTTGCCATGAAATTTCACATGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
54278 GCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCTACGGC
582 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGC
* * *
54343 TTGCGCAGTCCTGCCTCTCTAGGCCGACGGTAGTGCCCGCCCGCGGCGCTCGTTTCGTCGGTTGG
646 TTGCGCA-TCCCGCCTCTCT-GGCCGAC-GTAGTGCCCGCCCGC-CCACTCGTTTCGTCGGTTGG
* * * *
54408 C-TAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC-AGA-TGAGTG-CA-GGTAGCAGGA
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTATGGTAGCAGGA
** * * * *
54468 TTTGTAGACAAG-AAA-AGGGACCCGCCGATCCCA-G--T-C-C-T--T-----T-T-GC--CAT
771 TCGGCAG-CACGCAAAGGGGGACCGGCCGATCCCAGGCTTGCGCATCCTGCCCCTCTGGCGGC-T
* * ** *
54514 GTGC-CTCGCAC-CTCGTCTGGATGGGTTGACTTAGGCATACGGAG-TCATT-CCTGTCTAA
834 GAGCGCCCGCACGCTCGT-TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
54572 GCATAC-G-G---ATTCCCAGTCTAAGA-TCGATCAGACCGA-GGTT-AAGGTGCACATGCAT--
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGGTGCACATGC-TGG
* ** * * *
54627 GCTCGGGCATGTGCT-ATGCCGTATTTTTTTTCACTCGGGCCACCATCGCCGGAGCATCGTCGAA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCAGGCCACCATCGCCGGAGCATCGTCGAA
* * *
54691 CAACTTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGTGCACACATGAT
130 GAACTTGACCGACGGCATTGGGGTTCCGTCGATTGGGGGGGCC-GGGGG-GTGTGCACACATGAT
* * * * *
54756 GTGCGATGGGTACTGGTACTTGGCCCTTATGTTGGCCCCCTATCCGTCATCAAACCTTAAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACT
**
54821 CACACCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
54886 AATGGGGACACCTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
54951 TTGTGCATGCCAACAAAACATACAAGGATCACGTCTACAAAGTTTGGAGCCAAAACTCCTTCTGA
388 TTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTTCTGG
* *
55016 AAAAATTTTTAAAAAACCCTGAA
451 AAAAATTTTAAAAAAATCCTGAA
55039 GGCTCATGTC
Statistics
Matches: 4227, Mismatches: 494, Indels: 384
0.83 0.10 0.08
Matches are distributed among these distances:
834 5 0.00
835 3 0.00
836 1 0.00
837 3 0.00
838 1 0.00
839 2 0.00
843 3 0.00
844 1 0.00
846 3 0.00
847 1 0.00
848 80 0.02
849 20 0.00
850 85 0.02
851 12 0.00
852 22 0.01
853 22 0.01
854 17 0.00
855 37 0.01
856 46 0.01
857 73 0.02
858 107 0.03
859 22 0.01
860 52 0.01
861 50 0.01
862 32 0.01
863 2 0.00
864 6 0.00
866 1 0.00
867 1 0.00
869 113 0.03
870 60 0.01
871 1 0.00
872 3 0.00
873 1 0.00
880 3 0.00
882 226 0.05
883 5 0.00
885 187 0.04
886 250 0.06
887 294 0.07
888 30 0.01
889 21 0.00
890 3 0.00
891 1 0.00
892 3 0.00
893 128 0.03
894 4 0.00
895 8 0.00
896 221 0.05
897 516 0.12
898 128 0.03
899 63 0.01
900 85 0.02
901 9 0.00
902 87 0.02
903 34 0.01
904 74 0.02
905 33 0.01
906 5 0.00
907 4 0.00
908 57 0.01
909 306 0.07
910 6 0.00
911 209 0.05
912 139 0.03
913 198 0.05
914 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCAGGCCACCATCGCCGGAGCATCGTCGAAG
AACTTGACCGACGGCATTGGGGTTCCGTCGATTGGGGGGGCCGGGGGGTGTGCACACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTTGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTCTGGAAAAA
TTTTAAAAAAATCCTGAACCGTAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTATGGTAGCAGGATCGGCAGCAC
GCAAAGGGGGACCGGCCGATCCCAGGCTTGCGCATCCTGCCCCTCTGGCGGCTGAGCGCCCGCAC
GCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:52835 original size:26 final size:26
Alignment explanation
Indices: 52806--52858 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
52796 GGTTGACTAG
52806 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
52832 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
52858 G
1 G
52859 ATCAAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:57206 original size:685 final size:676
Alignment explanation
Indices: 55905--57251 Score: 1921
Period size: 685 Copynumber: 2.0 Consensus size: 676
55895 AATGGTCACA
* *
55905 AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
1 AAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* *
55970 ACGTCTAATAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAACGGTAAA
66 ACGTCTAACAAGTTTGGGGACAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAACGGTAAA
* *
56035 AAGTTTTAAAAACTGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
131 AAGCTTCAAAAACTGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
56100 AAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATG
196 AAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATG
* *
56165 TGCCTAAACCCACCTACCACCTTATCAATCGACAGCTTGCGCATCCCGCCTCTCTGACCGGCGTA
261 TGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCCGCCTCTCTGACCGGCGTA
* * **
56230 GTGCCCGCCCGCTCATTTCGTTGGCTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTGG
326 GTGCCCGCCCGCTCATTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* ** * ** * * *
56295 ACCAGACCAAGGTTTGTGGTAGCAGGATCGGTAGCACGCTGAGGGGGCCCCAACCGATCCCAAGC
391 ACCAGACCAAGGGTTACGGCAGCAGGATCGACAGCACGATGAGGGGGACCCAACCGATCCCAAGA
* * *
56360 TTGCGCATCCTGCCCCTCTGGTCGACTGAGGGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCA
456 TTGCGCATCCTGCCACTCTGGCCGACTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCA
* * *
56425 TATGGAGTTCATTCCCAGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGATCGGACCGGATCAA
521 TATGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
* * *
56490 GAGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTGTTTCGCCCGGGGCA
586 GAGTTGCGGGTGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTGTTTCACCCAGGGCA
56555 CCATCGTCGGAGAACCTTATCGACAG
651 CCATCGTCGGAGAACCTTATCGACAG
*
56581 AAATCCTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
1 AAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * * * *
56646 ATGTCTACCAAGTTTGGGGACAAAACTCCTTCTGAAAAAATTTTAAAGAAATCTCGAATCGG-AA
66 ACGTCTAACAAGTTTGGGGACAAAACTCCTTCTGAAAAAATTTAAAAAAAATC-CCAAACGGTAA
*
56710 AAAGCTTCAAAAA-TCGTGAAAAATAGCAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
130 AAAGCTTCAAAAACT-GAGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
* *
56774 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
193 CTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAG
* * * * * *
56839 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTTTGGCCGGC
258 ATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCCGCCTCTCTGACCGGC
* * *
56904 GTAGTGCTCGCCCGCCCGCGCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAG
323 GTA--G-T-GCCCG--C-C-CGCTCATTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAG
*** * * * *
56969 TCTAAGATCAGACCAGATGGAGGGTTACGGCAGTAGGATCGACAGCAC-ATAGAGGTGGACTCGA
380 TCTAAGATCAGACCAGACCAAGGGTTACGGCAGCAGGATCGACAGCACGAT-GAGGGGGACCCAA
* * * * * *
57033 TCGATCCTC-GGATTGCGCATCCTGCCACTCTGGCCGGCTGAGCGCCTGAACGCTTGTTTCGTGG
444 CCGATCC-CAAGATTGCGCATCCTGCCACTCTGGCCGACTGAGCGCCCGAACGCTCGTTTCATGG
57097 GTTGACTTAGGCATACT-AAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
508 GTTGACTTAGGCATA-TGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** *
57161 TCGGACTGGACCGAGGGTTGCGGGTGCAAATTTTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
572 TCGGACCGGACCAAGAGTTGCGGGTGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTG
57226 TTTCACCCAGGGCACCATCGTCGGAG
637 TTTCACCCAGGGCACCATCGTCGGAG
57252 CATCACCGAA
Statistics
Matches: 589, Mismatches: 68, Indels: 19
0.87 0.10 0.03
Matches are distributed among these distances:
675 1 0.00
676 132 0.22
677 166 0.28
679 1 0.00
680 1 0.00
681 5 0.01
683 1 0.00
684 2 0.00
685 278 0.47
686 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.25
Consensus pattern (676 bp):
AAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
ACGTCTAACAAGTTTGGGGACAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCCAAACGGTAAA
AAGCTTCAAAAACTGAGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
AAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATG
TGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCGCATCCCGCCTCTCTGACCGGCGTA
GTGCCCGCCCGCTCATTTCGTCGGCTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACCAAGGGTTACGGCAGCAGGATCGACAGCACGATGAGGGGGACCCAACCGATCCCAAGA
TTGCGCATCCTGCCACTCTGGCCGACTGAGCGCCCGAACGCTCGTTTCATGGGTTGACTTAGGCA
TATGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAA
GAGTTGCGGGTGCAAATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTGTTTCACCCAGGGCA
CCATCGTCGGAGAACCTTATCGACAG
Found at i:58908 original size:26 final size:26
Alignment explanation
Indices: 58879--58931 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
58869 GTTGACTTAG
*
58879 GCATACGGAGTT-TATTCCTAGTCTAA
1 GCATACGGAGTTCT-TTCCCAGTCTAA
*
58905 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCTTTCCCAGTCTAA
58931 G
1 G
58932 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCTTTCCCAGTCTAA
Found at i:60621 original size:26 final size:26
Alignment explanation
Indices: 60585--60637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
60575 GTTCACTTAG
*
60585 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
60611 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
60637 G
1 G
60638 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:61272 original size:900 final size:891
Alignment explanation
Indices: 59416--64977 Score: 6693
Period size: 900 Copynumber: 6.3 Consensus size: 891
59406 TCGTCTTGCC
* * *
59416 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGTGCATCCCACCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * * *
59481 GCCGACGTAGTGCCCGCCTGCCCGCCTGCCTACTCGTTTCATCGATTGGCTTAGCCATACGGAGT
66 GCCGACGTAGTGCCC-CCT--CCG-C--CC-GCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGT
* * * * * * * *
59546 TCATTCCCAGTCTAAGATCGGATCGGACAGAGGGTTACGGCAACAGGATCGGCAGCACGCTGAGA
124 TCATT-CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC-ATGAGG
* * * * * *
59611 GGGACCCGACCGATCCTCGACTTACGCATCCTACCCCTCTGGCCAACTGAGCACCCGCACGCTCG
187 GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCG
* * * * *
59676 TTTCATGGGTCGACTTAGGCATATGGAGTTCATTCCCAATCGAAGCATACAGAGTTCATTCCCAG
252 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAG
* * ** * *
59741 TCTAAGATCAAACTAGATTGAGGGTTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCG
316 TCTAAGATC-AA-TGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGTCA
* * *
59806 CATTGTTTTTCGCTCGGGGCACCATCG-C----CA--G-AG-G-ACCTGACCGACGGTATTGGGC
379 CATTTTTTTTCGC-CGGGGCACCATCGTCGGAGCATCGCAGAGAACCTGACCGACGGCATTGGGG
* * ** *
59861 TTCC-ACGATTGGGAGGG-CGGGGGAGGGGGTGCGCACATGATACGTGATGGGTGCTGGTACTTG
443 TTCCGACGATTGGGGGGGTC-GGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
59924 GCCCTTGTATTGGCCCTCTATCCCTCATCAAACCTCGAGAACTTACACCCCCTTAAAGTGCATTT
506 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * *
59989 GAGATTTTACAGGTTTACTGCCAGTAGCCATTAAATTGTCTGAAATGGGGATACTTTTTTCAAAT
571 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * *
60054 GGTCACAAAATCCTCTACACTTTGAGTTTTTAGCTG-ATTGTTTTTGTGCATGCCCATAAAAATA
636 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATG-CCAAAAAAATA
* *
60118 CAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATCTAAAAAAATCCCGAA
699 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAA
* * * * *
60183 TCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACAAG
764 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATG
* *
60248 AAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCAAAAAT
829 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
* * * * *
60311 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCGTATCTCGCCTCTCAG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * *
60376 GCCGACGTAGTGCCCACCCATCCGCCCGCTTGTTTCGCCAGTTGGCTTAGGCATACGGAGTTCAT
66 GCCGACGTAGTG-CC-CCC-TCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
* * ** * *
60441 TGCCAGTCTAAGATCAGACCAGA-TCGAGGGTTGTGATAGTAGGATCGACAGCACATAGAAGGGG
128 T-CCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACAT-GAGGGGG
* ** ** ** * * *
60505 ACCTGACCGATCCCCAACTTGCGCATCCACCCCCTCTGGCTGGCTGAGTGTCGGCACGCTCGTTT
190 ACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTT
* * *
60570 CGGGGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCTTTCCCAGTCT
255 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCT
** *
60635 AAGATCAAATTGGACTGAGGGTTGTAGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACAT
319 AAGATC-AA-TGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACAT
* * * *
60700 TTTTTTTCGTCCGAGCCACCATCGTCGGAGCATCGTCAGAGAACCTGACTGGCGGCATTGGGGTT
382 TTTTTTTCG-CCGGGGCACCATCGTCGGAGCATCG-CAGAGAACCTGACCGACGGCATTGGGGTT
*
60765 CCGACGATT-GGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCC
445 CCGACGATTGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
60828 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGTATTTGATA
510 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
60893 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATAGTC
575 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
60958 ACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAAAAAAATACAAGGA
640 ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGA
* * **
61023 TCACGTCTACCAAGTTTGGGGCCAAAAATCCATCTGAAAAAATTTTAAAAAAATCTGGAACCGTA
705 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAATCCCGAACCGTA
* * * *
61088 AAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGTCATGAAACTTCACATGAAGGC
769 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGC
*
61153 TTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
834 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
*
61211 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCCG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * * *
61276 GTCGGCGTAGTGCCCGCCACCCCGCCCACTCG-TTCGGTCGGTTGGCTTAGGCATACAGAGTACA
66 GCCGACGTAGTG-CC-CC-CTCCGCCCGCTCGTTTC-GTCGGTTGGCTTAGGCATACAGAGTTCA
* * * *** * *
61340 TTCCCAGTCTAAAATCAGATCGGACTGAGGGTTACCAAAACAGGATCGGCAGCACACTGAGGGGG
127 TT-CCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACA-TGAGGGGG
* * * * * * * * *
61405 ACCCGACCGGTCCCCAGCTTGCCCATCCTGCACCTTTGGCCGGTTAAGCGCCCGCACGTTCGTTT
190 ACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTT
* * * *
61470 CGTGGGTTGACTTAGGCATGCGGAGTTCATTACTAGTCTAAGCATACGGAGTTCATTCCTAGTCT
255 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GAGTTCATTCCCAGTCT
* * * * * *
61535 AAGATCAGATTAGA-TCGAGGGTTGCGAGTGCACATACTAGGCTCAGGCATGTGCTGATGAT-GC
319 AAGATCA-A-TGGACT-GAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTG-TCAC
* * *
61598 A-TTTTTTTAGCCCAGGGCACCA---TC---G---C-CAGAGAACCTTACCGACGGCATTGGGGT
380 ATTTTTTTTCG-CCGGGGCACCATCGTCGGAGCATCGCAGAGAACCTGACCGACGGCATTGGGGT
*
61652 TCC-AGCGATTGGGGGGGTGGGGGAGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
444 TCCGA-CGATTGGGGGGGT-CGGG-GGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
61716 GGCCCTTATATTGGCCCCGTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATT
505 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
*
61781 TGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
570 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
61846 TGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATAC
635 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATAC
* * **
61911 AAGGATCACGTCCACCAAGTTTGGTGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATGTCGAA
700 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAATCCCGAA
* * * * * *
61976 CAGCAAAAAAATTTCAAAAATCTTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACAT
764 CCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACAT
* * *
62041 GGAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGGCAGAAAT
828 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
*
62105 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * *
62170 GCCGGCGTAGTG----C-CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAAAGTTCATTCT
66 GCCGACGTAGTGCCCCCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTC-
* ** * * * *
62230 CAGTCTAAGATCAGACCAGACCAAGGATTGCAGCAGCAAGATC-AGTAGCACATTGAGGGGGACC
130 CAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACA-TGAGGGGGACC
* * *
62294 C-AGCCGATCCTCGGCTTGTGCATCCTGCCCCTCTGGCC-GACTGAGCGCCCGCACGCTCGTTAC
193 CGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAG-CTGAGCGCCCGCACGCTCGTTTC
*
62357 GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAG-AT-CG-G---A---CC-G-----
256 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAA
* * *
62407 GA-C------C-AAGGGTTTCGGGTGCACATGCTGGGCTC-GAGCATGTACTGGTGTCACATTTT
321 GATCAATGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCAG-GCATGTGCTGGTGTCACATTTT
* **
62463 TTTTCGCTCGGGCCACCATCGTCGGAGCATCGCTAGAGAACCTGACAAACGGCATTGGGGTTCCG
385 TTTTCGC-CGGGGCACCATCGTCGGAGCATCGC-AGAGAACCTGACCGACGGCATTGGGGTTCCG
** * * *
62528 GTGATTGGGGGGGCCGGGAGGGGGTGTGTGCAGATGATGTGCGATGGGTGCTGGTACTTGGCCCT
448 ACGATTGGGGGGGTC-GG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
62593 TATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCATACCCCCTTAAAGAGCATTTGAGAT
511 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
62658 TTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
576 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
62723 CAAAATCCTCTACACTTTGAGTTTTTAGCTGAATGTTTTTGTGCATGCCTATAAAAATACAAGGA
641 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGA
* * * * * *
62788 TCACATTTACCAAGTTTGGGGCTAAAACTCCTTTTGAAAAGATTTTAAAAAATCCCGAACCGTAA
705 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAA
*
62853 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAAGCT
770 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCT
*
62918 TAAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
835 T-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
*** * *
62976 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATAACTTGCGTATCCCGCCTCTCAG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * * * *
63041 GCTGACGTAGTGCCCGTCCATCCGCCCGCTTGTTTCGCCAGTTGGCTTAGGCGTACAGTGTTCAT
66 GCCGACGTAGTGCCC--CC-TCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
* ** * *
63106 TCCAAGTCTAAGATCAAACTAGA-TCGAGGATTGCGGCAGCAAGATCGACAGCATGC-TGAGGGG
128 TCC-AGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGACAGCA--CATGAGGGG
* * * * ** * * *
63169 GACCCGTCTGATCCTCGGCTTACGCATCCTGCCTTTCTAGCCAGTTGAGCGCCCGCACGCTTGTT
189 GACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTT
* ** *
63234 TCCTGGGTTGACTTAGGCATACCAAGTTCATTCCTAGTCTAAGCATACGAAGTTCATTCCCAGTC
254 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG-AGTTCATTCCCAGTC
* * * * * *
63299 TAAGATCTGACTGGACCT-AGGGTTACAGGTCCACATGCTGGGCTCGGGCATGTGCTGGTGTCGC
318 TAAGATC--AATGGA-CTGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGTCAC
* * * * **
63363 ATTTTTTTTTTGCTCAGGGCACGATCGTCGGAGCATCGCCGAAGAACCTGACCGGTGGCATTGGG
380 A-TTTTTTTTCGC-CGGGGCACCATCGTCGGAGCATCGCAG-AGAACCTGACCGACGGCATTGGG
* * * *
63428 GTTCCGACGATT-AGGGGG-CCGGGGGGTGTGCGCACATGATGTGTGATAGGTGCTGGTACTTGG
442 GTTCCGACGATTGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
*
63491 CCCTTATATTGGCCCCCTATCCCTCAGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
507 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
63556 AGA-TTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTATTCAAATG
572 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
63620 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATGCCCACAAAAATACA
637 GTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAAAAAAATACA
* * *
63685 AGGATCATGTCTA-AAAGGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTAAAAAAATCCCGAAC
701 AGGATCACGTCTACCAA-GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAAC
* *
63749 CGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACATGA
765 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGA
*
63814 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
830 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
* * *
63876 ATGAATATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTACGCATCCCGCCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * **
63941 GCCGGCGTAGTGCCCGCCTGCTTGCCCGCTCATTTCGTCGGTTGGCTTAGGCATGTAGAGTTCAT
66 GCCGACGTAGTGCCC-CCT-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
* * * *
64006 TCCCTA-TCTAAGATCAGACTGGACTGAGGCTTGTGGCAGCAGGATCGGCAGCACACTGAGGGGG
128 T-CC-AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACA-TGAGGGGG
* * * * * * * *
64070 ACCC-AGTCGATCCCAGGCTTGCGCTTCCTGTCCTTCTGGCCAGTTGAGCGCCTGCACGTTCGTT
190 ACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTT
* * *
64134 TCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAATCTAAG-AT-CG-G---A-T--C-G---
254 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCT
*
64186 --GATC-----A---AGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGCGCTGGTGTCACATTT
319 AAGATCAATGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACATTT
* * * * * * *
64241 TTTTTTGCCTGGGGCACTATCGTGGGAGCATCGTCGGAGAACTTGACCGACGGTATTGGGGTTTC
384 TTTTTCGCC-GGGGCACCATCGTCGGAGCATCG-CAGAGAACCTGACCGACGGCATTGGGGTTCC
* * * * *
64306 GGCGATTGGGGGGGTCGGGGGGGTGTGTGCACGTGATGTGCAATGGGTACTGGTACTTGGCCCTT
447 GACGATTGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* *
64371 ATATTGGCCACCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
512 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
64436 TTACAGGTTTGTTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATTGGTCAC
577 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * * *
64501 AAAATCTTGTACACTTCAATTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGAT
642 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGAT
* *
64566 CACATCTACC-AGCTTTGGGGCCAAAACTCCTTTTGAAAAAATTTAAAAAAATCCC-AGACCGTA
706 CACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGA-ACCGTA
* *
64629 AAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACGTCACATGAAGGC
769 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGC
*
64694 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAGT
834 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
* *
64752 ATGAAGATGTGCCTAAACCCACCTATCGCCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
1 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* *
64817 GCCGACGTAGTG---CCT--GCCCGCTCGTTTCGTCGGTTGGCTTAGGCAAACGGAGTTCATTCC
66 GCCGACGTAGTGCCCCCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
* * * * * *
64877 AGTCTAAGATCAGATCGGACTGAGAGTTGTGGTAGCAGGATCGATAGCACGCTGAGGGGGACCCG
131 AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCAC-ATGAGGGGGACCCG
* * *
64942 ACCGATCCCCGACTTGTGCATCCTGTCCCTCTGGCC
195 ACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC
64978 GATGTAGTGC
Statistics
Matches: 4052, Mismatches: 488, Indels: 282
0.84 0.10 0.06
Matches are distributed among these distances:
859 2 0.00
860 37 0.01
861 16 0.00
864 2 0.00
866 1 0.00
867 85 0.02
868 39 0.01
869 1 0.00
870 65 0.02
871 348 0.09
872 97 0.02
873 61 0.02
874 48 0.01
875 109 0.03
876 360 0.09
877 2 0.00
878 1 0.00
879 178 0.04
880 4 0.00
881 3 0.00
882 1 0.00
883 2 0.00
884 5 0.00
885 5 0.00
886 171 0.04
887 5 0.00
888 33 0.01
889 10 0.00
890 4 0.00
891 264 0.07
892 9 0.00
893 283 0.07
894 189 0.05
895 75 0.02
896 10 0.00
897 2 0.00
898 5 0.00
899 81 0.02
900 941 0.23
901 249 0.06
902 130 0.03
903 8 0.00
904 1 0.00
905 47 0.01
906 63 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
GCCGACGTAGTGCCCCCTCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
AGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACATGAGGGGGACCCGA
CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGATCA
ATGGACTGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTTTTCG
CCGGGGCACCATCGTCGGAGCATCGCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGG
GGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAA
AATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
Found at i:61521 original size:26 final size:26
Alignment explanation
Indices: 61485--61537 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
61475 GTTGACTTAG
*
61485 GCATGCGGAGTTCATTACTAGTCTAA
1 GCATACGGAGTTCATTACTAGTCTAA
*
61511 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTACTAGTCTAA
61537 G
1 G
61538 ATCAGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACTAGTCTAA
Found at i:63286 original size:26 final size:26
Alignment explanation
Indices: 63250--63302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
63240 GTTGACTTAG
*
63250 GCATACCAAGTTCATTCCTAGTCTAA
1 GCATACCAAGTTCATTCCCAGTCTAA
*
63276 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACCAAGTTCATTCCCAGTCTAA
63302 G
1 G
63303 ATCTGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACCAAGTTCATTCCCAGTCTAA
Found at i:66260 original size:179 final size:172
Alignment explanation
Indices: 65952--66409 Score: 602
Period size: 179 Copynumber: 2.6 Consensus size: 172
65942 TCTTGCGCAG
* *
65952 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTA-ATTTAGAGGAAGA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATT-TTTTGAAA-TTTATTTTTA-AGGAAAA
* *
66016 TTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTTGAAAATTTATTTTTAAGGCAAATTGAT
62 TTGATACTTTCAACTTTTCCCCAAAAA-T-ATTTTTTTGAAAATTTATTTTCAAGGCAAATTGAT
*
66081 ACTTT-AACTTTT-CCAAAAATTTTTTTTTTGGAAATTTTGATTTTCT-A
125 ACTTTCAACTTTTCCCAAAAATTTTTTTTTTGGAAACTTT-ATTTT-TAA
66128 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGAAATGAAATTTTATTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAATATTTTT----TGAAA-TTTATTTTTAAGGAA
* *
66193 TATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAACTTTGATTTTCAAGG-AAGATT
60 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT-GAAAATTT-ATTTTCAAGGCAA-ATT
66257 GATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTGGAAACTTTATTTTTAA
122 GATACTTTCAACTTTT-CCCAAAAATTTTTTTTTTGGAAACTTTATTTTTAA
*
66309 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTGGAAATTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAA--TATTTTTT-GAAATTTATTTTTAAGGAAAA
*
66374 TTGATACATTCAACTTTTCCCCAAAAATATTTTTTT
62 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
66410 TGATTTTTAT
Statistics
Matches: 255, Mismatches: 10, Indels: 31
0.86 0.03 0.10
Matches are distributed among these distances:
175 3 0.01
176 35 0.14
177 9 0.04
178 10 0.04
179 113 0.44
180 16 0.06
181 36 0.14
182 27 0.11
183 6 0.02
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.45
Consensus pattern (172 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAATTTATTTTTAAGGAAAATTGA
TACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTCAAGGCAAATTGATACTTTC
AACTTTTCCCAAAAATTTTTTTTTTGGAAACTTTATTTTTAA
Found at i:66410 original size:60 final size:60
Alignment explanation
Indices: 65952--66411 Score: 573
Period size: 60 Copynumber: 7.7 Consensus size: 60
65942 TCTTGCGCAG
* * * *
65952 GGAAAATTGATACTTTCAACTTTTCCCTAAAAA-TATTCTTTT-GAAACTTTA-ATTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTGGAAACTTTATTTTTA-A
* * * *
66010 GGAAGATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTT-GAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATT-TTTTTTTTGGAAACTTTATTTTTAA
* *
66070 GGCAAATTGATACTTT-AACTTTT--CCAAAAATTTTTTTTTTGGAAATTTTGATTTTCT-A
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTGGAAACTTT-ATTTT-TAA
* *** *
66128 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTGAAAT-GAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAT-TTTTT-TTTTGGAAACTTTATTTTTAA
* * * *
66189 GGAATATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTTTAGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTGGAAACTTT-ATTTTTAA
*
66249 GGAAGATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTGGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTGGAAACTTTATTTTTAA
*
66309 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATGTTTTTTTTGGAAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTGGAAACTTTATTTTTAA
* *
66368 GGAAAATTGATACATTCAACTTTTCCCCAAAAATATTTTTTTTG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTG
66412 ATTTTTATTT
Statistics
Matches: 355, Mismatches: 32, Indels: 29
0.85 0.08 0.07
Matches are distributed among these distances:
56 7 0.02
57 15 0.04
58 52 0.15
59 80 0.23
60 123 0.35
61 64 0.18
62 13 0.04
63 1 0.00
ACGTcount: A:0.33, C:0.12, G:0.09, T:0.45
Consensus pattern (60 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTGGAAACTTTATTTTTAA
Found at i:66436 original size:5 final size:5
Alignment explanation
Indices: 66426--66521 Score: 94
Period size: 5 Copynumber: 19.6 Consensus size: 5
66416 TTATTTAAAG
*
66426 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT -AAAAT AAAAT
* * *
66472 AAAAT AAAA- AAAGT AAAAC AAAA- ATAA- AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
66519 AAA
1 AAA
66522 GGTAAAAAGG
Statistics
Matches: 77, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
3 3 0.04
4 9 0.12
5 54 0.70
6 7 0.09
7 4 0.05
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:66449 original size:18 final size:18
Alignment explanation
Indices: 66426--66515 Score: 83
Period size: 18 Copynumber: 4.7 Consensus size: 18
66416 TTATTTAAAG
*
66426 AAAATAAAATAATAAAAC
1 AAAATAAAATAATAAAAT
66444 AAAATAAAAGTGAAAATAAAAAT
1 AAAATAAAA-T---AAT-AAAAT
*
66467 AAAATAAAATAAAAAAAGT
1 AAAATAAAATAATAAAA-T
*
66486 AAAACAAAAATAA-AAAAT
1 AAAA-TAAAATAATAAAAT
66504 AAAATAAAATAA
1 AAAATAAAATAA
66516 AATAAAGGTA
Statistics
Matches: 61, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
17 7 0.11
18 18 0.30
19 12 0.20
20 7 0.11
22 4 0.07
23 13 0.21
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (18 bp):
AAAATAAAATAATAAAAT
Found at i:66459 original size:25 final size:23
Alignment explanation
Indices: 66426--66521 Score: 92
Period size: 23 Copynumber: 4.1 Consensus size: 23
66416 TTATTTAAAG
66426 AAAATAAAATAATAAAACAAAAT
1 AAAATAAAATAATAAAACAAAAT
*
66449 AAAAGTGAAAAT-A-AAAATAAAAT
1 AAAA-T-AAAATAATAAAACAAAAT
*
66472 AAAATAAAAAAAGTAAAACAAAAAT
1 AAAATAAAATAA-TAAAAC-AAAAT
*
66497 AAAA-AATAA-AATAAAATAAAAT
1 AAAATAA-AATAATAAAACAAAAT
66519 AAA
1 AAA
66522 GGTAAAAAGG
Statistics
Matches: 62, Mismatches: 4, Indels: 15
0.77 0.05 0.19
Matches are distributed among these distances:
21 4 0.06
22 10 0.16
23 22 0.35
24 10 0.16
25 16 0.26
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (23 bp):
AAAATAAAATAATAAAACAAAAT
Found at i:66461 original size:12 final size:11
Alignment explanation
Indices: 66426--66521 Score: 83
Period size: 12 Copynumber: 8.7 Consensus size: 11
66416 TTATTTAAAG
66426 AAAATAAAATAA
1 AAAATAAAAT-A
*
66438 TAAAACAAAATA
1 -AAAATAAAATA
*
66450 AAAGTGAAAATA
1 AAAAT-AAAATA
66462 AAAATAAAAT-
1 AAAATAAAATA
66472 AAAAT-AAA-A
1 AAAATAAAATA
* *
66481 AAAGTAAAACA
1 AAAATAAAATA
*
66492 AAAATAAAAAA
1 AAAATAAAATA
66503 TAAAATAAAAT-
1 -AAAATAAAATA
66514 AAAATAAA
1 AAAATAAA
66522 GGTAAAAAGG
Statistics
Matches: 70, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
9 7 0.10
10 16 0.23
11 18 0.26
12 20 0.29
13 9 0.13
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:66467 original size:36 final size:33
Alignment explanation
Indices: 66426--66521 Score: 110
Period size: 33 Copynumber: 2.9 Consensus size: 33
66416 TTATTTAAAG
*
66426 AAAATAAAATAATAAAACAAAATAAAAGTGAAAATA
1 AAAATAAAA-AATAAAA-AAAATAAAAGT-AAAACA
*
66462 AAAAT--AAAATAAAATAAA-AAAAGTAAAACA
1 AAAATAAAAAATAAAAAAAATAAAAGTAAAACA
66492 AAAATAAAAAATAAAATAAAATAAAA-TAAA
1 AAAATAAAAAATAAAA-AAAATAAAAGTAAA
66522 GGTAAAAAGG
Statistics
Matches: 53, Mismatches: 3, Indels: 11
0.79 0.04 0.16
Matches are distributed among these distances:
30 10 0.19
31 6 0.11
32 12 0.23
33 14 0.26
34 6 0.11
36 5 0.09
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (33 bp):
AAAATAAAAAATAAAAAAAATAAAAGTAAAACA
Found at i:66468 original size:28 final size:30
Alignment explanation
Indices: 66425--66520 Score: 91
Period size: 28 Copynumber: 3.4 Consensus size: 30
66415 TTTATTTAAA
66425 GAAAATAAAATAATAAAACAAAATAAAAGT
1 GAAAATAAAATAATAAAACAAAATAAAAGT
*
66455 GAAAAT-AAA-AATAAAATAAAATAAAA--
1 GAAAATAAAATAATAAAACAAAATAAAAGT
* * *
66481 -AAAGTAAAACAA-AAATAAAAAATAAAA-T
1 GAAAATAAAATAATAAA-ACAAAATAAAAGT
66509 -AAAATAAAATAA
1 GAAAATAAAATAA
66521 AGGTAAAAAG
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
25 4 0.07
26 6 0.11
27 12 0.21
28 26 0.46
29 3 0.05
30 6 0.11
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (30 bp):
GAAAATAAAATAATAAAACAAAATAAAAGT
Found at i:66502 original size:37 final size:38
Alignment explanation
Indices: 66426--66528 Score: 124
Period size: 37 Copynumber: 2.8 Consensus size: 38
66416 TTATTTAAAG
* **
66426 AAAATAAAAT--AATAAAACAAAATAAAAGTGAAAATA
1 AAAATAAAATAAAATAAAACAAAGTAAAAGCAAAAATA
66462 AAAATAAAATAAAATAAAA-AAAGTAAAA-CAAAAATAA
1 AAAATAAAATAAAATAAAACAAAGTAAAAGCAAAAAT-A
*
66499 AAAATAAAATAAAATAAAATAAAGGTAAAA
1 AAAATAAAATAAAATAAAACAAA-GTAAAA
66529 AGGATACTAA
Statistics
Matches: 59, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
36 15 0.25
37 28 0.47
38 10 0.17
39 6 0.10
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.16
Consensus pattern (38 bp):
AAAATAAAATAAAATAAAACAAAGTAAAAGCAAAAATA
Found at i:66515 original size:42 final size:41
Alignment explanation
Indices: 66426--66521 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 41
66416 TTATTTAAAG
* * * *
66426 AAAATAAAATAATAAAACAAAATAAAAGTGAAAATAAAAAT
1 AAAATAAAATAAAAAAACAAAACAAAAATAAAAATAAAAAT
*
66467 AAAATAAAATAAAAAAAGTAAAACAAAAATAAAAA-ATAAAAT
1 AAAATAAAATAAAAAAA-CAAAACAAAAATAAAAATA-AAAAT
66509 AAAATAAAATAAA
1 AAAATAAAATAAA
66522 GGTAAAAAGG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
41 17 0.35
42 31 0.65
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (41 bp):
AAAATAAAATAAAAAAACAAAACAAAAATAAAAATAAAAAT
Found at i:66529 original size:47 final size:45
Alignment explanation
Indices: 66426--66521 Score: 124
Period size: 47 Copynumber: 2.1 Consensus size: 45
66416 TTATTTAAAG
*
66426 AAAATAAAATAATAAAACAAAATAAAAGTGAAAATAAAAATAAAAT
1 AAAATAAAA-AATAAAACAAAATAAAAATGAAAATAAAAATAAAAT
66472 AAAATAAAAAAAGTAAAACAAAAATAAAAAAT-AAAAT-AAAATAAAAT
1 AAAAT-AAAAAA-TAAAAC-AAAAT-AAAAATGAAAATAAAAATAAAAT
66519 AAA
1 AAA
66522 GGTAAAAAGG
Statistics
Matches: 45, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
46 7 0.16
47 23 0.51
48 10 0.22
49 5 0.11
ACGTcount: A:0.79, C:0.02, G:0.03, T:0.16
Consensus pattern (45 bp):
AAAATAAAAAATAAAACAAAATAAAAATGAAAATAAAAATAAAAT
Found at i:67483 original size:28 final size:30
Alignment explanation
Indices: 67420--67476 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
67410 CACAGCCCCA
67420 AAAAAAGAAAAAAAATAATAATCAGATAAAC
1 AAAAAAGAAAAAAAAT-ATAATCAGATAAAC
*
67451 GAAAAAGAAAAAAAAT-TAA-CAGATAA
1 AAAAAAGAAAAAAAATATAATCAGATAA
67477 TTAAAAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 7 0.28
29 3 0.12
31 15 0.60
ACGTcount: A:0.74, C:0.05, G:0.09, T:0.12
Consensus pattern (30 bp):
AAAAAAGAAAAAAAATATAATCAGATAAAC
Found at i:67545 original size:18 final size:19
Alignment explanation
Indices: 67524--67564 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
67514 AGATAAAAAA
67524 ATAATAAAAAAATAAAT-T
1 ATAATAAAAAAATAAATAT
* *
67542 ATAATATAATAATAAATAT
1 ATAATAAAAAAATAAATAT
67561 ATAA
1 ATAA
67565 CTATATAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAATAAAAAAATAAATAT
Found at i:67992 original size:41 final size:42
Alignment explanation
Indices: 67898--68022 Score: 182
Period size: 41 Copynumber: 3.0 Consensus size: 42
67888 TTTGACCAAA
* * * * *
67898 GCTCATCTAAACAGAGGCTCAACGACTTTGAAAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-GTAAATT
67941 GCTCCTCTAAACAGAGGCACCACGAC-TTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
67982 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
68023 TCTCACCACG
Statistics
Matches: 76, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
41 42 0.55
42 11 0.14
43 23 0.30
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.22
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:68067 original size:68 final size:68
Alignment explanation
Indices: 67958--68090 Score: 232
Period size: 68 Copynumber: 2.0 Consensus size: 68
67948 TAAACAGAGG
67958 CACCACGACTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
1 CACCACGACTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
68023 TCT
66 TCT
* *
68026 CACCACGACTTTGG-AAATTAAATTGCTCCTCTAAACAGAGGCACCATGACTTTGGAAAGTAAAT
1 CACCACGAC-TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAAT
68090 T
65 T
68091 GCTCCTCTAA
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
68 58 0.94
69 4 0.06
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (68 bp):
CACCACGACTTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATT
TCT
Found at i:68256 original size:42 final size:41
Alignment explanation
Indices: 68026--68302 Score: 400
Period size: 41 Copynumber: 6.8 Consensus size: 41
68016 GTAAATTTCT
*
68026 CACCACGACTTTGGAAATTAAATTGCTCCTCTAAACAGAGG
1 CACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGG
* *
68067 CACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGG
1 CACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGG
*
68108 CACACACAACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGG
1 CAC-CACGAC-TTTGGAAAATAAATTGCTCCTCTAAACAGAGG
68151 CACCACGAC--T--AAAATAAATTGCTCCTCTAAACAGAGG
1 CACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGG
* * *
68188 CATCACGACTTTGGAAAGTAAATTGCTCTTCTAAACAGAGG
1 CACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGG
*
68229 CACCATGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGG
1 CACCACGAC-TTTGGAAAATAAATTGCTCCTCTAAACAGAGG
* *
68271 CACCATGACTTTTGGAAAGTAAATTGCTCCTC
1 CACCACGAC-TTTGGAAAATAAATTGCTCCTC
68303 GACAAACATG
Statistics
Matches: 215, Mismatches: 14, Indels: 13
0.89 0.06 0.05
Matches are distributed among these distances:
37 35 0.16
39 2 0.01
41 74 0.34
42 70 0.33
43 34 0.16
ACGTcount: A:0.35, C:0.23, G:0.17, T:0.25
Consensus pattern (41 bp):
CACCACGACTTTGGAAAATAAATTGCTCCTCTAAACAGAGG
Found at i:74254 original size:15 final size:16
Alignment explanation
Indices: 74223--74260 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
74213 ATTATTCCAT
*
74223 CTTTCTCCTTCTTTAG
1 CTTTCTCCCTCTTTAG
74239 CTTTCTCCCT-TTTAG
1 CTTTCTCCCTCTTTAG
*
74254 CCTTCTC
1 CTTTCTC
74261 TAGCATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 11 0.55
16 9 0.45
ACGTcount: A:0.05, C:0.37, G:0.05, T:0.53
Consensus pattern (16 bp):
CTTTCTCCCTCTTTAG
Found at i:80168 original size:174 final size:172
Alignment explanation
Indices: 79758--80271 Score: 744
Period size: 174 Copynumber: 3.0 Consensus size: 172
79748 TCTTGCGCAG
* * *
79758 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTAATTTAGAGGAAGAT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAA-ATTTTTTTGAAA-TTTATTTTA-AGGAAAAT
79823 TGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATAC
62 TGATACTTTCAACTTTTCCTCAAAAA---TTTTTTTG-AAATTTATTTTTAAGGAAAATTGATAC
* *
79888 TTTCAACATTTTTTCCCAAAAATA-TTTTTTTGAA--ATTTT--GATTTTCAA
123 TTTCAAC---TTTTCCCAAAAATATTTTTTTTGAATTTTTTTAAAATTTTCAA
79936 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATTTTTTGAAATTTATTTTAAGGAAAATTGA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAAT-TTTTTTGAAATTTATTTTAAGGAAAATTGA
80000 TACTTTCAACTTTTCCTCAAAAATTTTTTTGAAATTTATTTTTAAGGAAAATTGATACTTTCAAC
65 TACTTTCAACTTTTCCTCAAAAATTTTTTTGAAATTTATTTTTAAGGAAAATTGATACTTTCAAC
80065 TTTTCCCAAAAATATTTTTTTTGAATTTTTTTAAAATTTT-AA
130 TTTTCCCAAAAATATTTTTTTTGAATTTTTTTAAAATTTTCAA
80107 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAATTTTTTTGAAATTTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAATTTTTTTGAAA-TTTA-TTTTAAGGAAAATT
80172 GATACTTTCAACTTTTCC-CAAAAATATTTTTTGAAATTTATTTTTAAGGAAAATTGATACTTTC
63 GATACTTTCAACTTTTCCTCAAAAAT-TTTTTTGAAATTTATTTTTAAGGAAAATTGATACTTTC
*
80236 AACTTTT--CAAAAATATTTTTTTT-ATTTTTATTTAAA
127 AACTTTTCCCAAAAATATTTTTTTTGAATTTT-TTTAAA
80272 GAAAATAAAA
Statistics
Matches: 318, Mismatches: 6, Indels: 30
0.90 0.02 0.08
Matches are distributed among these distances:
167 14 0.04
168 10 0.03
170 38 0.12
171 41 0.13
172 38 0.12
173 17 0.05
174 110 0.35
175 10 0.03
176 13 0.04
178 27 0.08
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.47
Consensus pattern (172 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAAATTTTTTTGAAATTTATTTTAAGGAAAATTGAT
ACTTTCAACTTTTCCTCAAAAATTTTTTTGAAATTTATTTTTAAGGAAAATTGATACTTTCAACT
TTTCCCAAAAATATTTTTTTTGAATTTTTTTAAAATTTTCAA
Found at i:80187 original size:119 final size:110
Alignment explanation
Indices: 79758--80243 Score: 656
Period size: 117 Copynumber: 4.2 Consensus size: 110
79748 TCTTGCGCAG
* *
79758 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTCTTTTGAAACTTTA-ATTTAGAGGAAG
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAAT-TT-TTTTGAAA-TTTATTTTTA-AGGAAA
* *
79821 ATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGAAAATTTATTTTTAA
61 ATTGATACTTTCAACTTTTCC-CAAAAA--TATTTTTTG-AAATTTAATTTTAA
*
79875 GGAAAATTGATACTTTCAACATTTTTTCC-CAAAAATATTTTTTTGAAATTTTGATTTTCAAGGA
1 GGAAAATTGATACTTTCAAC---TTTTCCTC-AAAA-ATTTTTTTGAAA-TTT-ATTTTTAAGGA
79939 AAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAATTT-ATTTTAA
59 AAATTGATACTTTCAACTTTTCCCAAAAATATTTTTTGAAATTTAATTTTAA
79990 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTGAAATTTATTTTTAAGGAAAATTGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTGAAATTTATTTTTAAGGAAAATTGA
*
80055 TACTTTCAACTTTTCCCAAAAATATTTTTTTTGAATTTTTTTAAAATTTTAA
66 TACTTTCAACTTTTCCCAAAAATA--TTTTTTGAA---ATTT--AATTTTAA
80107 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAATTTTTTTGAAATTTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATTTTTTTGAAA-TTTATTTTTAAGGAAAATT
*
80172 GATACTTTCAACTTTTCCCAAAAATATTTTTTGAAATTTATTTTTAA
64 GATACTTTCAACTTTTCCCAAAAATATTTTTTGAAATTTAATTTTAA
80219 GGAAAATTGATACTTTCAACTTTTC
1 GGAAAATTGATACTTTCAACTTTTC
80244 AAAAATATTT
Statistics
Matches: 341, Mismatches: 11, Indels: 39
0.87 0.03 0.10
Matches are distributed among these distances:
109 41 0.12
110 3 0.01
111 21 0.06
112 42 0.12
113 1 0.00
114 6 0.02
115 26 0.08
116 6 0.02
117 72 0.21
118 16 0.05
119 62 0.18
120 40 0.12
121 5 0.01
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (110 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTGAAATTTATTTTTAAGGAAAATTGA
TACTTTCAACTTTTCCCAAAAATATTTTTTGAAATTTAATTTTAA
Found at i:80236 original size:229 final size:230
Alignment explanation
Indices: 79758--80243 Score: 756
Period size: 229 Copynumber: 2.1 Consensus size: 230
79748 TCTTGCGCAG
*
79758 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTAATTTAGAGGAAGAT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTAATTTAGAGGAAAAT
* *
79823 TGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATAC
66 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTAATTTTAAGGAAAATTGATAC
79888 TTTCAACATTTTTTCCCAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAAATTGATACTTTC
131 TTTCAAC--TTTTTCCCAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAAATTGATACTTTC
79953 AACTTTTCCCAAAAATATTTTTTGAAATTTATTTTAA
194 AACTTTTCCCAAAAATATTTTTTGAAATTTATTTTAA
*
79990 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAAT-TT-TTTTGAAA-TTTATTTTTA-AGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTCTTTTGAAACTTTA-ATTTAGAGGAAA
**
80050 ATTGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAATTTTTTTAAAATTTTAAGGAAAAT
64 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAA--AATTT--AATTTTAAGGAAAAT
*
80114 TGATACTTTCAAC-TTTTCCTCAAAAA-ATTTTTTTGAAATTTT-ATTTTTAAGGAAAATTGATA
125 TGATACTTTCAACTTTTTCC-CAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAAATTGATA
80176 CTTTCAACTTTTCCCAAAAATATTTTTTGAAATTTATTTTTAA
189 CTTTCAACTTTTCCCAAAAATATTTTTTGAAATTTA-TTTTAA
80219 GGAAAATTGATACTTTCAACTTTTC
1 GGAAAATTGATACTTTCAACTTTTC
80244 AAAAATATTT
Statistics
Matches: 238, Mismatches: 7, Indels: 20
0.90 0.03 0.08
Matches are distributed among these distances:
228 73 0.31
229 82 0.34
230 21 0.09
231 5 0.02
232 57 0.24
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (230 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTAATTTAGAGGAAAAT
TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTAATTTTAAGGAAAATTGATAC
TTTCAACTTTTTCCCAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAAATTGATACTTTCAA
CTTTTCCCAAAAATATTTTTTGAAATTTATTTTAA
Found at i:80258 original size:229 final size:229
Alignment explanation
Indices: 79758--80257 Score: 766
Period size: 228 Copynumber: 2.2 Consensus size: 229
79748 TCTTGCGCAG
* *
79758 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTAATTTAGAGGAAGAT
1 GGAAAATTGATACTTTCAACTTTT-CCTAAAAATATTTTTTTGAAACTTTAATTTAGAGGAAAAT
* *
79823 TGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATAC
65 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTAATTTTAAGGAAAATTGATAC
79888 TTTCAACATTTTTTCCCAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAAATTGATACTTTC
130 TTTCAAC--TTTTTCCCAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAAATTGATACTTTC
79953 AACTTTTCCCAAAAATATTTTTTGAAATTTATTTTAA
193 AACTTTTCCCAAAAATATTTTTTGAAATTTATTTTAA
* *
79990 GGAAAATTGATACTTTCAACTTTTCCTCAAAA-ATTTTTTTGAAA-TTTATTTTTA-AGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTAAAAATATTTTTTTGAAACTTTA-ATTTAGAGGAAAAT
**
80052 TGATACTTTCAACTTTTCC-CAAAAATATTTTTTTTGAATTTTTTTAAAATTTTAAGGAAAATTG
65 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAA--AATTT--AATTTTAAGGAAAATTG
*
80116 ATACTTTCAAC-TTTTCCTCAAAAA-ATTTTTTTGAAATTTT-ATTTTTAAGGAAAATTGATACT
126 ATACTTTCAACTTTTTCC-CAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAAATTGATACT
80178 TTCAACTTTTCCCAAAAATATTTTTTGAAATTTATTTTTAA
190 TTCAACTTTTCCCAAAAATATTTTTTGAAATTTA-TTTTAA
80219 GGAAAATTGATACTTTCAACTTTT-C-AAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTAAAAATATTTTTTT
80258 TATTTTTATT
Statistics
Matches: 250, Mismatches: 10, Indels: 20
0.89 0.04 0.07
Matches are distributed among these distances:
227 4 0.02
228 82 0.33
229 82 0.33
230 24 0.10
231 7 0.03
232 51 0.20
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (229 bp):
GGAAAATTGATACTTTCAACTTTTCCTAAAAATATTTTTTTGAAACTTTAATTTAGAGGAAAATT
GATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTAATTTTAAGGAAAATTGATACT
TTCAACTTTTTCCCAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAAATTGATACTTTCAAC
TTTTCCCAAAAATATTTTTTGAAATTTATTTTAA
Found at i:80307 original size:30 final size:28
Alignment explanation
Indices: 80269--80349 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
80259 ATTTTTATTT
* *
80269 AAAGAAAATAAAATAATAAAACAAAATA
1 AAAGAAAATAAAAAAATAAAAAAAAATA
80297 AAAGTGAAAATAAAAAAAATAAATAAAAAATA
1 AAA--GAAAAT-AAAAAAATAAA-AAAAAATA
*
80329 AAAAAAAATAAAAAAATAAAA
1 AAAGAAAATAAAAAAATAAAA
80350 TAAAGGTAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 4 0.09
29 11 0.24
30 11 0.24
31 10 0.22
32 10 0.22
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.14
Consensus pattern (28 bp):
AAAGAAAATAAAAAAATAAAAAAAAATA
Found at i:80317 original size:21 final size:21
Alignment explanation
Indices: 80273--80353 Score: 85
Period size: 22 Copynumber: 3.7 Consensus size: 21
80263 TTATTTAAAG
80273 AAAATAAAATAATAAAACAAAAT
1 AAAATAAAA-AATAAAA-AAAAT
*
80296 AAAAGT-GAAAATAAAAAAAAT
1 AAAA-TAAAAAATAAAAAAAAT
80317 -AAATAAAAAATAAAAAAAAAT
1 AAAATAAAAAAT-AAAAAAAAT
*
80338 AAAAAAATAAAATAAA
1 AAAATAA-AAAATAAA
80354 GGTAAAAAGG
Statistics
Matches: 50, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
19 1 0.02
20 8 0.16
21 14 0.28
22 15 0.30
23 11 0.22
24 1 0.02
ACGTcount: A:0.81, C:0.01, G:0.02, T:0.15
Consensus pattern (21 bp):
AAAATAAAAAATAAAAAAAAT
Found at i:80326 original size:11 final size:10
Alignment explanation
Indices: 80278--80344 Score: 73
Period size: 10 Copynumber: 6.5 Consensus size: 10
80268 TAAAGAAAAT
*
80278 AAAATAATAA
1 AAAAAAATAA
*
80288 AACAAAATAA
1 AAAAAAATAA
*
80298 AAGTGAAAAT-A
1 AA--AAAAATAA
80309 AAAAAAATAA
1 AAAAAAATAA
80319 ATAAAAAATAA
1 A-AAAAAATAA
80330 AAAAAAATAA
1 AAAAAAATAA
80340 AAAAA
1 AAAAA
80345 TAAAATAAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
9 5 0.10
10 26 0.53
11 13 0.27
12 5 0.10
ACGTcount: A:0.82, C:0.01, G:0.03, T:0.13
Consensus pattern (10 bp):
AAAAAAATAA
Found at i:80331 original size:25 final size:24
Alignment explanation
Indices: 80273--80349 Score: 84
Period size: 25 Copynumber: 3.1 Consensus size: 24
80263 TTATTTAAAG
*
80273 AAAATAAAATAATAAAACAAAAT-A
1 AAAATAAAATAA-AAAAAAAAATAA
*
80297 AAAGTGAAAATAAAAAAAATAAATAA
1 AAAAT-AAAATAAAAAAAA-AAATAA
*
80323 AAAATAAAAAAAAATAAAAAAATAA
1 AAAATAAAATAAAA-AAAAAAATAA
80348 AA
1 AA
80350 TAAAGGTAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
24 9 0.20
25 27 0.60
26 9 0.20
ACGTcount: A:0.82, C:0.01, G:0.03, T:0.14
Consensus pattern (24 bp):
AAAATAAAATAAAAAAAAAAATAA
Found at i:80351 original size:30 final size:31
Alignment explanation
Indices: 80269--80353 Score: 90
Period size: 30 Copynumber: 2.8 Consensus size: 31
80259 ATTTTTATTT
* *
80269 AAAG-AAAATAAAATAAT-AAA-ACAAAATA
1 AAAGAAAAATAAAAAAATAAAATAAAAAATA
*
80297 AAAGTGAAAATAAAAAAA-ATAAATAAAAAATA
1 AAAG-AAAAATAAAAAAATA-AAATAAAAAATA
80329 AAA-AAAAATAAAAAAATAAAATAAA
1 AAAGAAAAATAAAAAAATAAAATAAA
80354 GGTAAAAAGG
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
28 4 0.08
30 30 0.62
31 4 0.08
32 10 0.21
ACGTcount: A:0.81, C:0.01, G:0.04, T:0.14
Consensus pattern (31 bp):
AAAGAAAAATAAAAAAATAAAATAAAAAATA
Found at i:80406 original size:17 final size:17
Alignment explanation
Indices: 80268--80413 Score: 81
Period size: 18 Copynumber: 8.5 Consensus size: 17
80258 TATTTTTATT
80268 TAAAGAAAATAAAAT-AA
1 TAAA-AAAATAAAATAAA
*
80285 TAAAACAAAATAAAAGTGAA
1 T-AAA-AAAATAAAA-TAAA
*
80305 -AATAAAA-AAAATAAA
1 TAAAAAAATAAAATAAA
*
80320 T-AAAAAATAAAAAAAAA
1 TAAAAAAAT-AAAATAAA
80337 TAAAAAAATAAAATAAA
1 TAAAAAAATAAAATAAA
* *
80354 GGTAAAAAGGAT--ACTAAA
1 --TAAAAA-AATAAAATAAA
** **
80372 TAAACCTAATCTAATAAA
1 TAAA-AAAATAAAATAAA
80390 TAAAAAAATAAAATAAA
1 TAAAAAAATAAAATAAA
80407 -AAAAAAA
1 TAAAAAAA
80414 ACCTGGAGCG
Statistics
Matches: 100, Mismatches: 16, Indels: 27
0.70 0.11 0.19
Matches are distributed among these distances:
15 8 0.08
16 17 0.17
17 29 0.29
18 35 0.35
19 7 0.07
20 4 0.04
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.16
Consensus pattern (17 bp):
TAAAAAAATAAAATAAA
Done.