Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168007.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_262, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41439
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.34
Found at i:2494 original size:28 final size:28
Alignment explanation
Indices: 2434--2494 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
2424 ACCTAAAACC
2434 AAAAA-CAAACATCCTAAACATGAAAGA
1 AAAAATCAAACATCCTAAACATGAAAGA
* * *
2461 AGAAATCAATCATCGTAAACATTGAAA-A
1 AAAAATCAAACATCCTAAACA-TGAAAGA
2489 AAAAAT
1 AAAAAT
2495 TGCATTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
27 4 0.14
28 19 0.68
29 5 0.18
ACGTcount: A:0.61, C:0.15, G:0.08, T:0.16
Consensus pattern (28 bp):
AAAAATCAAACATCCTAAACATGAAAGA
Found at i:3595 original size:18 final size:18
Alignment explanation
Indices: 3565--3611 Score: 62
Period size: 18 Copynumber: 2.6 Consensus size: 18
3555 CCGTTGTAAG
3565 TGAAAATTTAATAATTTTA
1 TGAAAATTTAAT-ATTTTA
3584 TGAAAA-TTAATATTTTAA
1 TGAAAATTTAATATTTT-A
3602 T-AAAATTTAA
1 TGAAAATTTAA
3612 ATCAAGATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
17 9 0.35
18 11 0.42
19 6 0.23
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (18 bp):
TGAAAATTTAATATTTTA
Found at i:3608 original size:17 final size:18
Alignment explanation
Indices: 3565--3600 Score: 56
Period size: 17 Copynumber: 2.0 Consensus size: 18
3555 CCGTTGTAAG
3565 TGAAAATTTAATAATTTTA
1 TGAAAA-TTAATAATTTTA
3584 TGAAAATTAAT-ATTTTA
1 TGAAAATTAATAATTTTA
3601 ATAAAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 5 0.29
19 6 0.35
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (18 bp):
TGAAAATTAATAATTTTA
Found at i:3981 original size:22 final size:20
Alignment explanation
Indices: 3948--4018 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 20
3938 TATTAGAAAT
*
3948 AAAATAAAAAATACAAAATAC
1 AAAAAAAAAAATA-AAAATAC
*
3969 AAACAAAAAAAATATAAAA-CC
1 AAA-AAAAAAAATA-AAAATAC
3990 AAAAAAAACCAAA-AAAAATAC
1 AAAAAAAA--AAATAAAAATAC
4011 AAAAAAAA
1 AAAAAAAA
4019 GGGAAACAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
20 9 0.21
21 17 0.40
22 16 0.38
ACGTcount: A:0.80, C:0.11, G:0.00, T:0.08
Consensus pattern (20 bp):
AAAAAAAAAAATAAAAATAC
Found at i:3997 original size:10 final size:10
Alignment explanation
Indices: 3984--4018 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
3974 AAAAAAATAT
3984 AAAACCAAAA
1 AAAACCAAAA
3994 AAAACCAAAA
1 AAAACCAAAA
*
4004 AAAATACAAAA
1 AAAA-CCAAAA
4015 AAAA
1 AAAA
4019 GGGAAACAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.83, C:0.14, G:0.00, T:0.03
Consensus pattern (10 bp):
AAAACCAAAA
Found at i:4014 original size:17 final size:15
Alignment explanation
Indices: 3962--4018 Score: 52
Period size: 16 Copynumber: 4.1 Consensus size: 15
3952 TAAAAAATAC
3962 AAAATACAAACAAAA
1 AAAATACAAACAAAA
* *
3977 AAAATATAAAACCAAA
1 AAAATA-CAAACAAAA
3993 AAAA-AC---CAAAA
1 AAAATACAAACAAAA
4004 AAAATACAAA-AAAA
1 AAAATACAAACAAAA
4018 A
1 A
4019 GGGAAACAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 11
0.69 0.08 0.23
Matches are distributed among these distances:
11 8 0.24
12 2 0.06
14 5 0.15
15 7 0.21
16 11 0.33
ACGTcount: A:0.81, C:0.12, G:0.00, T:0.07
Consensus pattern (15 bp):
AAAATACAAACAAAA
Found at i:7817 original size:53 final size:53
Alignment explanation
Indices: 7759--7864 Score: 203
Period size: 53 Copynumber: 2.0 Consensus size: 53
7749 AAAAATTTTC
*
7759 ATTTGGGTCATTTGTACATGTAAAAATTCATTGTCATAGGCATATATGCATTT
1 ATTTGGGTCATTTGTACATATAAAAATTCATTGTCATAGGCATATATGCATTT
7812 ATTTGGGTCATTTGTACATATAAAAATTCATTGTCATAGGCATATATGCATTT
1 ATTTGGGTCATTTGTACATATAAAAATTCATTGTCATAGGCATATATGCATTT
7865 CATGATATTC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 52 1.00
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (53 bp):
ATTTGGGTCATTTGTACATATAAAAATTCATTGTCATAGGCATATATGCATTT
Found at i:13550 original size:33 final size:32
Alignment explanation
Indices: 13443--13751 Score: 284
Period size: 32 Copynumber: 9.5 Consensus size: 32
13433 AAATGATAAA
* *
13443 TTTTAAGCCCAGTTTATCTGACCATCAATTA-
1 TTTTAAGCCCAGTTTATCTGGCCATCAATGAG
* * * *
13474 TATTTAAGCCTAGTTTATCTAGTCATCAATGAC
1 T-TTTAAGCCCAGTTTATCTGGCCATCAATGAG
*
13507 ATTTAAGCCCAGTTTATCTGGCC-TCAAATGAGG
1 TTTTAAGCCCAGTTTATCTGGCCATC-AATGA-G
* *
13540 TTTTAAGCCCAGTTTAGCTGGCCATCAATAAAG
1 TTTTAAGCCCAGTTTATCTGGCCATCAAT-GAG
13573 TTTTAAGCCCAGTTTATCTGGCC-TCAAATGAGG
1 TTTTAAGCCCAGTTTATCTGGCCATC-AATGA-G
* * *
13606 TTTTAAGCCCAGTTTAGT-TGGCCTTCAATAAA
1 TTTTAAGCCCAGTTTA-TCTGGCCATCAATGAG
* * * *
13638 ATTTAAGCCCAATTTATCTAGCCATCAATGAC
1 TTTTAAGCCCAGTTTATCTGGCCATCAATGAG
* *
13670 ATTTAAGCCCAGTTTATCTGGCCATTAATGAGG
1 TTTTAAGCCCAGTTTATCTGGCCATCAATGA-G
* * * * * *
13703 TTTTAAGCCTAGTTTAGCTAGCCTTCAATAAA
1 TTTTAAGCCCAGTTTATCTGGCCATCAATGAG
* *
13735 ATTTAAGCCTAGTTTAT
1 TTTTAAGCCCAGTTTAT
13752 TTTACCCCAA
Statistics
Matches: 229, Mismatches: 37, Indels: 23
0.79 0.13 0.08
Matches are distributed among these distances:
31 4 0.02
32 119 0.52
33 100 0.44
34 6 0.03
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (32 bp):
TTTTAAGCCCAGTTTATCTGGCCATCAATGAG
Found at i:13700 original size:97 final size:95
Alignment explanation
Indices: 13438--13751 Score: 330
Period size: 97 Copynumber: 3.2 Consensus size: 95
13428 TAAAAAAATG
* * * * * *
13438 ATAAATTTTAAGCCCAGTTTATCTGACCATCAATTATATTTAAGCCTAGTTTATCTAGTCATCAA
1 ATAAAATTTAAGCCCAGTTTATCTG-CCATCAA-TAAATTTAAGCCCAGTTTATCTGGCCATAAA
**
13503 TGA-CATTTAAGCCCAGTTTA-TCTGGCC-TCAA
64 TGAGGTTTTAAGCCCAGTTTAGT-TGGCCTTC-A
*** *
13534 ATGAGGTTTTAAGCCCAGTTTAGCTGGCCATCAATAAAGTTTTAAGCCCAGTTTATCTGGCC-TC
1 AT-AAAATTTAAGCCCAGTTTATCT-GCCATCAATAAA--TTTAAGCCCAGTTTATCTGGCCAT-
13598 AAATGAGGTTTTAAGCCCAGTTTAGTTGGCCTTCA
61 AAATGAGGTTTTAAGCCCAGTTTAGTTGGCCTTCA
* * *
13633 ATAAAATTTAAGCCCAATTTATCTAGCCATCAATGACATTTAAGCCCAGTTTATCTGGCCATTAA
1 ATAAAATTTAAGCCCAGTTTATCT-GCCATCAAT-AAATTTAAGCCCAGTTTATCTGGCCATAAA
* * *
13698 TGAGGTTTTAAGCCTAGTTTAGCTAGCCTTCA
64 TGAGGTTTTAAGCCCAGTTTAGTTGGCCTTCA
*
13730 ATAAAATTTAAGCCTAGTTTAT
1 ATAAAATTTAAGCCCAGTTTAT
13752 TTTACCCCAA
Statistics
Matches: 185, Mismatches: 23, Indels: 19
0.81 0.10 0.08
Matches are distributed among these distances:
96 5 0.03
97 100 0.54
98 52 0.28
99 25 0.14
100 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (95 bp):
ATAAAATTTAAGCCCAGTTTATCTGCCATCAATAAATTTAAGCCCAGTTTATCTGGCCATAAATG
AGGTTTTAAGCCCAGTTTAGTTGGCCTTCA
Found at i:13719 original size:163 final size:162
Alignment explanation
Indices: 13443--13751 Score: 460
Period size: 163 Copynumber: 1.9 Consensus size: 162
13433 AAATGATAAA
* * * * *
13443 TTTTAAGCCCAGTTTATCTGACCATCAATTATATTTAAGCCTAGTTTATCTAGTCATCAATGACA
1 TTTTAAGCCCAGTTTATCTGACCATCAATAAAATTTAAGCCCAATTTATCTAGCCATCAATGACA
*
13508 TTTAAGCCCAGTTTATCTGGCCTCAAATGAGGTTTTAAGCCCAGTTTAGCTGGCCATCAATAAAG
66 TTTAAGCCCAGTTTATCTGGCCTCAAATGAGGTTTTAAGCCCAGTTTAGCTAGCCATCAATAAA-
*
13573 TTTTAAGCCCAGTTTATCTGGCCTCAAATGAGG
130 ATTTAAGCCCAGTTTATCTGGCCTCAAATGAGG
* *
13606 TTTTAAGCCCAGTTTAGT-TGGCCTTCAATAAAATTTAAGCCCAATTTATCTAGCCATCAATGAC
1 TTTTAAGCCCAGTTTA-TCTGACCATCAATAAAATTTAAGCCCAATTTATCTAGCCATCAATGAC
* * *
13670 ATTTAAGCCCAGTTTATCTGGCCAT-TAATGAGGTTTTAAGCCTAGTTTAGCTAGCCTTCAATAA
65 ATTTAAGCCCAGTTTATCTGGCC-TCAAATGAGGTTTTAAGCCCAGTTTAGCTAGCCATCAATAA
*
13734 AATTTAAGCCTAGTTTAT
129 AATTTAAGCCCAGTTTAT
13752 TTTACCCCAA
Statistics
Matches: 131, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
162 15 0.11
163 114 0.87
164 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (162 bp):
TTTTAAGCCCAGTTTATCTGACCATCAATAAAATTTAAGCCCAATTTATCTAGCCATCAATGACA
TTTAAGCCCAGTTTATCTGGCCTCAAATGAGGTTTTAAGCCCAGTTTAGCTAGCCATCAATAAAA
TTTAAGCCCAGTTTATCTGGCCTCAAATGAGG
Found at i:13969 original size:43 final size:41
Alignment explanation
Indices: 13908--13990 Score: 94
Period size: 41 Copynumber: 2.0 Consensus size: 41
13898 TTGCATCGCT
* * * *
13908 CATCTGTGCAACATGAAAGGGATATTTGCATTTACATCACTTA
1 CATCTGTACAACAAGAAA--GACATTCGCATTTACATCACTTA
* *
13951 CATCTGTACCACAAGAAAGACATTCGCATTTGCATCACTT
1 CATCTGTACAACAAGAAAGACATTCGCATTTACATCACTT
13991 GCATTTGCAC
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
41 19 0.56
43 15 0.44
ACGTcount: A:0.33, C:0.23, G:0.14, T:0.30
Consensus pattern (41 bp):
CATCTGTACAACAAGAAAGACATTCGCATTTACATCACTTA
Found at i:14572 original size:87 final size:87
Alignment explanation
Indices: 14336--14606 Score: 319
Period size: 87 Copynumber: 3.1 Consensus size: 87
14326 TCTTGATTTC
* * * * *
14336 TAAGACCTCCAGACATAAATTCAATTCGCGGTGTTATCCCAATCGATTTATTATTCTCGACTTGC
1 TAAGACCTCCAGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCATTATTCTCGACTTGC
14401 GGTGTTGTCTCAGTCGATTCTG
66 GGTGTTGTCTCAGTCGATTCTG
* * ** * * * *
14423 TAAAACCTCCGGGCATAATTTCGATTCGCAATGTTATCCTGATCGATTCTTTAATT-TTGACTTA
1 TAAGACCTCCAGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCATT-ATTCTCGACTTG
* *
14487 TGGTTTTGTCTCAGTCGATTCTG
65 CGGTGTTGTCTCAGTCGATTCTG
* * * *
14510 TAAGACCTCTAGGCATAATTTTGATTCGTGGTGTTATCCCGATCAATTCATTATTCTCGACTTGC
1 TAAGACCTCCAGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCATTATTCTCGACTTGC
* * * *
14575 AGTGTTGTCCCAGTTGATTTTG
66 GGTGTTGTCTCAGTCGATTCTG
14597 TAAGACCTCC
1 TAAGACCTCC
14607 GAGAATCATT
Statistics
Matches: 148, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
86 3 0.02
87 142 0.96
88 3 0.02
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.38
Consensus pattern (87 bp):
TAAGACCTCCAGGCATAATTTCGATTCGCGGTGTTATCCCGATCGATTCATTATTCTCGACTTGC
GGTGTTGTCTCAGTCGATTCTG
Found at i:14902 original size:3 final size:3
Alignment explanation
Indices: 14894--14922 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14884 TGTGGTTAAA
14894 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
14923 AGGGAAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:15112 original size:17 final size:17
Alignment explanation
Indices: 15083--15138 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 17
15073 ATTAAAAATG
15083 AAATACGAAATACAAAAA
1 AAATAC-AAATACAAAAA
15101 AAATACAAATACAAACAAAA
1 AAATACAAATAC--A-AAAA
15121 AAATACAAA-ACAAAAA
1 AAATACAAATACAAAAA
15137 AA
1 AA
15139 GACAAAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
16 6 0.17
17 7 0.20
18 6 0.17
19 3 0.09
20 13 0.37
ACGTcount: A:0.77, C:0.12, G:0.02, T:0.09
Consensus pattern (17 bp):
AAATACAAATACAAAAA
Found at i:15133 original size:15 final size:15
Alignment explanation
Indices: 15090--15150 Score: 72
Period size: 15 Copynumber: 4.1 Consensus size: 15
15080 ATGAAATACG
*
15090 AAATACAAAAAAAATA
1 AAATACAAAACAAA-A
15106 CAAATAC-AAACAAAA
1 -AAATACAAAACAAAA
15121 AAATACAAAACAAAA
1 AAATACAAAACAAAA
*
15136 AAAGACAAAA-AAAA
1 AAATACAAAACAAAA
15150 A
1 A
15151 GGAACAGAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
14 11 0.27
15 18 0.44
16 6 0.15
17 6 0.15
ACGTcount: A:0.80, C:0.11, G:0.02, T:0.07
Consensus pattern (15 bp):
AAATACAAAACAAAA
Found at i:18753 original size:22 final size:22
Alignment explanation
Indices: 18714--18758 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
18704 TGGAGAGGCT
** *
18714 TTAAAATTTTTTTTTTTTTAAA
1 TTAAAATTTTAATATTTTTAAA
18736 TTAAAATTTTAATATTTTTAAA
1 TTAAAATTTTAATATTTTTAAA
18758 T
1 T
18759 ATATTTTAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TTAAAATTTTAATATTTTTAAA
Found at i:19393 original size:1 final size:1
Alignment explanation
Indices: 19387--19452 Score: 69
Period size: 1 Copynumber: 66.0 Consensus size: 1
19377 TAAGTCTATG
* * * * * * *
19387 TTTTTTTTTTCTTTATTTTTTTTATTTTTTTTTTATTTTTTTTATTTTTTATTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
19452 T
1 T
19453 ATTCTATTTC
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.09, C:0.02, G:0.00, T:0.89
Consensus pattern (1 bp):
T
Found at i:19410 original size:9 final size:9
Alignment explanation
Indices: 19387--19455 Score: 76
Period size: 9 Copynumber: 8.0 Consensus size: 9
19377 TAAGTCTATG
19387 TTTTTT-TT
1 TTTTTTATT
*
19395 TTCTTTATT
1 TTTTTTATT
19404 TTTTTTATT
1 TTTTTTATT
19413 TTTTTT-TT
1 TTTTTTATT
19421 ATTTTTT-TT
1 -TTTTTTATT
19430 ATTTTTTA--
1 -TTTTTTATT
19438 TTTTTTATT
1 TTTTTTATT
19447 TTTTTTATT
1 TTTTTTATT
19456 CTATTTCTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
7 7 0.13
8 7 0.13
9 40 0.74
ACGTcount: A:0.10, C:0.01, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTATT
Found at i:19414 original size:6 final size:6
Alignment explanation
Indices: 19387--19520 Score: 64
Period size: 6 Copynumber: 22.2 Consensus size: 6
19377 TAAGTCTATG
* * *
19387 TTTTT- TTTTTC TTTATTT TTTTTA TTTTT- TTTTTA TTTTT- TTTAT-
1 TTTTTA TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* * * *
19432 TTTTTA TTTTTTA TTTTTT TTATTCTA TTTCTA -TTTTA TTATTA TTATTA
1 TTTTTA -TTTTTA TTTTTA TT-TT-TA TTTTTA TTTTTA TTTTTA TTTTTA
* * * *
19482 TTGTTTG TTTTT- TTTCATA TATATA TATTTTA TTTTTA T
1 TT-TTTA TTTTTA TTT-TTA TTTTTA T-TTTTA TTTTTA T
19521 CTTAGGTATT
Statistics
Matches: 102, Mismatches: 15, Indels: 23
0.73 0.11 0.16
Matches are distributed among these distances:
5 25 0.25
6 50 0.49
7 24 0.24
8 3 0.03
ACGTcount: A:0.16, C:0.03, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:19416 original size:20 final size:20
Alignment explanation
Indices: 19390--19496 Score: 97
Period size: 20 Copynumber: 5.0 Consensus size: 20
19380 GTCTATGTTT
19390 TTTTTTTCTTTATTTTTTTTA
1 TTTTTTT-TTTATTTTTTTTA
19411 TTTTTTTTTTATTTTTTTTA
1 TTTTTTTTTTATTTTTTTTA
19431 TTTTTTATTTTTTATTTTTTTTA
1 --TTTT-TTTTTTATTTTTTTTA
* * *
19454 TTCTATTTCTATTTTATTATTA
1 TTTTTTTTTTATTTT-TT-TTA
* *
19476 TTATTATTGTTTGTTTTTTTT
1 TT-TT-TTTTTTATTTTTTTT
19497 CATATATATA
Statistics
Matches: 71, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
20 22 0.31
21 12 0.17
22 11 0.15
23 19 0.27
24 7 0.10
ACGTcount: A:0.13, C:0.03, G:0.02, T:0.82
Consensus pattern (20 bp):
TTTTTTTTTTATTTTTTTTA
Found at i:19418 original size:23 final size:22
Alignment explanation
Indices: 19388--19455 Score: 104
Period size: 23 Copynumber: 3.1 Consensus size: 22
19378 AAGTCTATGT
19388 TTTTTTTTTCTTTATTTTTTTTA
1 TTTTTTTTT-TTTATTTTTTTTA
19411 --TTTTTTTTTTATTTTTTTTA
1 TTTTTTTTTTTTATTTTTTTTA
19431 TTTTTTATTTTTTATTTTTTTTA
1 TTTTTT-TTTTTTATTTTTTTTA
19454 TT
1 TT
19456 CTATTTCTAT
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
20 13 0.31
21 7 0.17
22 4 0.10
23 18 0.43
ACGTcount: A:0.10, C:0.01, G:0.00, T:0.88
Consensus pattern (22 bp):
TTTTTTTTTTTTATTTTTTTTA
Found at i:19467 original size:34 final size:33
Alignment explanation
Indices: 19398--19518 Score: 99
Period size: 34 Copynumber: 3.6 Consensus size: 33
19388 TTTTTTTTTC
*
19398 TTTATT-TTTTTTATTTTTTTTTTATTTTTTTTAT
1 TTTATTATTTTTTA--TTTTTTTTATTTTTTCTAT
19432 TTT-TTATTTTTTATTTTTTTTATTCTATTTCTAT
1 TTTATTATTTTTTATTTTTTTTATT-T-TTTCTAT
*
19466 TTTATTATTATTATTATTGTTTGTT-TTTTTTC-A-
1 TTTATTATT-TT-TTATT-TTTTTTATTTTTTCTAT
* *
19499 TATATATATATTTTATTTTT
1 TTTAT-TATTTTTTATTTTT
19519 ATCTTAGGTA
Statistics
Matches: 75, Mismatches: 4, Indels: 19
0.77 0.04 0.19
Matches are distributed among these distances:
31 3 0.04
32 16 0.21
33 9 0.12
34 23 0.31
35 9 0.12
36 3 0.04
37 7 0.09
38 5 0.07
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (33 bp):
TTTATTATTTTTTATTTTTTTTATTTTTTCTAT
Found at i:19481 original size:9 final size:8
Alignment explanation
Indices: 19398--19483 Score: 53
Period size: 7 Copynumber: 11.1 Consensus size: 8
19388 TTTTTTTTTC
19398 TTTATT-T
1 TTTATTAT
19405 TTT-TTAT
1 TTTATTAT
19412 TTT-TT-T
1 TTTATTAT
19418 TTTATT-T
1 TTTATTAT
19425 TTT-TTAT
1 TTTATTAT
19432 TTT-TTAT
1 TTTATTAT
19439 TTT-TTATT
1 TTTATTA-T
*
19447 TTTTTTAT
1 TTTATTAT
*
19455 TCTATTTCTAT
1 T-T-TAT-TAT
19466 TTTATTAT
1 TTTATTAT
19474 TATTATTAT
1 T-TTATTAT
19483 T
1 T
19484 GTTTGTTTTT
Statistics
Matches: 69, Mismatches: 1, Indels: 16
0.80 0.01 0.19
Matches are distributed among these distances:
6 8 0.12
7 29 0.42
8 10 0.14
9 14 0.20
10 4 0.06
11 4 0.06
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.81
Consensus pattern (8 bp):
TTTATTAT
Found at i:19693 original size:13 final size:13
Alignment explanation
Indices: 19677--19702 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
19667 CATCTGATTT
19677 TTTTTATTTTTTA
1 TTTTTATTTTTTA
19690 TTTTTATTTTTTA
1 TTTTTATTTTTTA
19703 ATTTATGCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:20597 original size:5 final size:5
Alignment explanation
Indices: 20566--20661 Score: 63
Period size: 5 Copynumber: 18.6 Consensus size: 5
20556 TTAGATTAAG
* * * *
20566 TTTAT TTAAT GTTCT TTTAT CTTTAT TTTATT TTTATT TTTGT TTTACT
1 TTTAT TTTAT TTTAT TTTAT -TTTAT TTTA-T TTTA-T TTTAT TTTA-T
* *
20615 TTTCT TTT-T TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
20662 CTTTAAATAA
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
3 3 0.04
4 4 0.06
5 40 0.56
6 21 0.29
7 4 0.06
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:20600 original size:17 final size:17
Alignment explanation
Indices: 20580--20661 Score: 55
Period size: 17 Copynumber: 4.9 Consensus size: 17
20570 TTTAATGTTC
20580 TTTTATCTTTATTTTAT
1 TTTTATCTTTATTTTAT
* *
20597 TTTTATTTTTGTTTTA-
1 TTTTATCTTTATTTTAT
* *
20613 CTTT-TCTTTTTTTTAT
1 TTTTATCTTTATTTTAT
* *
20629 TTTCA-CTTTTATTTTGTT
1 TTTTATC-TTTATTTT-AT
20647 TTATTAT-TTTATTTT
1 TT-TTATCTTTATTTT
20662 CTTTAAATAA
Statistics
Matches: 49, Mismatches: 10, Indels: 11
0.70 0.14 0.16
Matches are distributed among these distances:
15 9 0.18
16 6 0.12
17 21 0.43
18 11 0.22
19 2 0.04
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.78
Consensus pattern (17 bp):
TTTTATCTTTATTTTAT
Found at i:20621 original size:32 final size:31
Alignment explanation
Indices: 20585--20662 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 31
20575 TGTTCTTTTA
* * *
20585 TCTTTATTTTATTTTTATTTTTGTTTTACTTT
1 TCTTTATTTTATTTTCACTTTTATTTT-CTTT
* *
20617 TCTTTTTTTTATTTTCACTTTTATTTTGTTT
1 TCTTTATTTTATTTTCACTTTTATTTTCTTT
*
20648 T-ATTATTTTATTTTC
1 TCTTTATTTTATTTTC
20663 TTTAAATAAA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
30 12 0.31
31 4 0.10
32 23 0.59
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.77
Consensus pattern (31 bp):
TCTTTATTTTATTTTCACTTTTATTTTCTTT
Found at i:20636 original size:21 final size:20
Alignment explanation
Indices: 20580--20651 Score: 65
Period size: 21 Copynumber: 3.4 Consensus size: 20
20570 TTTAATGTTC
20580 TTTTATCTTTA-TTTTATTTTTAT
1 TTTTAT-TTTACTTTTA--TTT-T
* *
20603 TTTTGTTTTACTTTTCTTTT
1 TTTTATTTTACTTTTATTTT
20623 TTTTATTTTCACTTTTATTTT
1 TTTTATTTT-ACTTTTATTTT
20644 GTTTTATT
1 -TTTTATT
20652 ATTTTATTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
20 9 0.21
21 13 0.31
22 11 0.26
23 9 0.21
ACGTcount: A:0.12, C:0.07, G:0.03, T:0.78
Consensus pattern (20 bp):
TTTTATTTTACTTTTATTTT
Found at i:20831 original size:59 final size:57
Alignment explanation
Indices: 20678--21252 Score: 522
Period size: 59 Copynumber: 9.7 Consensus size: 57
20668 ATAAAATCCA
* * *
20678 AAAAAATATTTTT-GGAGAAAAGTTGAAAGTGTCAATTTTTCTTACAAATAAATTTTC
1 AAAAAATATTTTTGGGA-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * * * **
20735 AAAAAAAAGTTTTTTTTGAGAAAAAGTTAAAAATATCAATTTTCCTCGAAAATCAAAGTTTTC
1 --AAAAAA--TATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTC
*
20798 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTTC
1 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * *
20855 AAAAAAGTTTTTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
1 AAAAAA--TATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTC
*
20916 AAAAAATATTTTT-GGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAATATTTTTGGGA-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* * * *
20973 AAAAAAAAAAGGTTTTTGATG-AACAGTTGAAAGTATCAATTTT-CTTCGAAAATCAAAGTTTTC
1 --AAAAAATA--TTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTT-AAAAAT-AAA-TTTTC
* *
21036 AAAAAATATTTTCGGG-AAAAGTTAAAAGTATCAATTTT-CTTAAAAAAATAAATTTTC
1 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTT--AAAAATAAATTTTC
* * * * * *
21093 AAAAAAGTTTTTTTTGAGGAAAAA-TTGAAAGTCTCAATTTTTCTCGAAATAA-AAGTTTCC
1 AAAAAA--TATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCT-TAAA-AATAAATTTTC
* *
21153 AAAAAATTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAA-TATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
*
21211 AAAAAAATAAATTTTTAAGG-AAAAGTTGAAAGTATCAATTTT
1 -AAAAAAT--ATTTTT-GGGAAAAAGTTGAAAGTATCAATTTT
21253 TCCTGCACAA
Statistics
Matches: 432, Mismatches: 49, Indels: 69
0.79 0.09 0.13
Matches are distributed among these distances:
57 30 0.07
58 49 0.11
59 171 0.40
60 68 0.16
61 95 0.22
62 8 0.02
63 11 0.03
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (57 bp):
AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:20922 original size:118 final size:118
Alignment explanation
Indices: 20678--21252 Score: 775
Period size: 118 Copynumber: 4.8 Consensus size: 118
20668 ATAAAATCCA
* *
20678 AAAAAATATTTTT-GGAGAAAAGTTGAAAGTGTCAATTTTTCTTACAAATAAATTTTCAAAAAAA
1 AAAAAATATTTTTGGGA-AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC--AAAAA
* * * *
20742 AGTTTTTTTTGAGAAAAAGTTAAAAATATCAATTTTCCTCGAAAATCAAAGTTTTC
63 AGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCC
20798 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAA-TTTTCTTTAAAAATAAATTTTCAAAAAAG
1 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTC-TTAAAAATAAATTTTCAAAAAAG
*
20862 TTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
65 TTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCC
20916 AAAAAATATTTTT-GGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAA
1 AAAAAATATTTTTGGGA-AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTC--AAAAA
**** * * * *
20980 AAAGGTTTTTGATGAACAGTTGAAAGTATCAATTTTCTTCGAAAATCAAAGTTTTC
63 AGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCC
* *
21036 AAAAAATATTTTCGGG-AAAAGTTAAAAGTATCAA-TTTTCTTAAAAAAATAAATTTTCAAAAAA
1 AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTT--AAAAATAAATTTTCAAAAAA
* * * *
21099 GTTTTTTTTGAGGAAAAATTGAAAGTCTCAATTTTTCTCG-AAATAAAAGTTTCC
64 GTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCC
* *
21153 AAAAAATTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAA
1 AAAAAA-TATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAG
** *
21218 TAAATTTTTAAGGAAAAGTTGAAAGTATCAATTTT
65 T-TTTTTTTGAGGAAAAGTTGAAAGTATCAATTTT
21253 TCCTGCACAA
Statistics
Matches: 404, Mismatches: 38, Indels: 27
0.86 0.08 0.06
Matches are distributed among these distances:
117 21 0.05
118 176 0.44
119 72 0.18
120 130 0.32
121 5 0.01
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (118 bp):
AAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAGT
TTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTCC
Found at i:21096 original size:238 final size:234
Alignment explanation
Indices: 20678--21252 Score: 882
Period size: 238 Copynumber: 2.4 Consensus size: 234
20668 ATAAAATCCA
* *
20678 AAAAAATATTTTTGGAGAAAAGTTGAAAGTGTCAATTTTTCTTACAAATAAATTTTCAAAAAAAA
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAAA
** * *
20743 GTTTTTTTTGAGAAAAAGTTAAAAATATCAATTTTCCTCGAAAATCAAAGTTTTCAAAAAATATT
66 --AATTTTTGAG-AAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTTCAAAAAATATT
* * *
20808 TTTGGGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTTCAAAAAAGTTTTTTTTGAG
128 TTCGGGAAAAAGTTAAAAGTATCAATTTTCTTAAAAAATAAATTTTCAAAAAAGTTTTTTTTGAG
* * *
20873 GAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
193 GAAAAATTGAAAGTATCAATTTTCCTCG-AAATAAAAGTTTCC
20916 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAAA
1 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAAA
* *
20981 AAGGTTTTTGATGAACAGTTGAAAGTATCAATTTTCTTCGAAAATCAAAGTTTTCAAAAAATATT
66 AA--TTTTTGA-GAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTTCAAAAAATATT
21046 TTCGGG-AAAAGTTAAAAGTATCAATTTTCTTAAAAAAATAAATTTTCAAAAAAGTTTTTTTTGA
128 TTCGGGAAAAAGTTAAAAGTATCAATTTTCTT-AAAAAATAAATTTTCAAAAAAGTTTTTTTTGA
* *
21110 GGAAAAATTGAAAGTCTCAATTTTTCTCGAAATAAAAGTTTCC
192 GGAAAAATTGAAAGTATCAATTTTCCTCGAAATAAAAGTTTCC
*
21153 AAAAAATTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAA
1 AAAAAA-TATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAA
*
21218 TAAATTTTTAAGGAAAAGTTGAAAGTATCAATTTT
65 -AAATTTTTGA-GAAAAGTTGAAAGTATCAATTTT
21253 TCCTGCACAA
Statistics
Matches: 311, Mismatches: 20, Indels: 13
0.90 0.06 0.04
Matches are distributed among these distances:
237 71 0.23
238 236 0.76
239 4 0.01
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (234 bp):
AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAAA
AATTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTCGAAAATCAAAGTTTTCAAAAAATATTTTC
GGGAAAAAGTTAAAAGTATCAATTTTCTTAAAAAATAAATTTTCAAAAAAGTTTTTTTTGAGGAA
AAATTGAAAGTATCAATTTTCCTCGAAATAAAAGTTTCC
Found at i:21209 original size:17 final size:17
Alignment explanation
Indices: 21187--21226 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
21177 TGAAAGTATC
**
21187 AATTTTTCTTAAAAATA
1 AATTTTTCAAAAAAATA
21204 AA-TTTTCAAAAAAATA
1 AATTTTTCAAAAAAATA
21220 AATTTTT
1 AATTTTT
21227 AAGGAAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTTTTCAAAAAAATA
Found at i:31082 original size:40 final size:41
Alignment explanation
Indices: 31002--31127 Score: 164
Period size: 40 Copynumber: 3.0 Consensus size: 41
30992 ACTTTTAGTC
* * * * *
31002 GCAATTTACTTTTCAAAGTCATGGTGCCTCTGTTTAGAGGA
1 GCAATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGA
31043 GCAATTTATTTTTCAAAGT-GTTGAGCCTCTGATTAGAGGA
1 GCAATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGA
* *
31083 GCCATTTATGTTTCTCAAAGTCGTTGAGCCTCTGCTTAGAGGA
1 GCAATTTAT-TTT-TCAAAGTCGTTGAGCCTCTGATTAGAGGA
31126 GC
1 GC
31128 TTTGGTCAAA
Statistics
Matches: 75, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
40 25 0.33
41 21 0.28
42 7 0.09
43 22 0.29
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (41 bp):
GCAATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGA
Found at i:31167 original size:14 final size:14
Alignment explanation
Indices: 31135--31161 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
31125 AGCTTTGGTC
31135 AAAAACAAAAAAAA
1 AAAAACAAAAAAAA
31149 AAAAACAAAAAAA
1 AAAAACAAAAAAA
31162 GCAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAACAAAAAAAA
Found at i:31328 original size:1 final size:1
Alignment explanation
Indices: 31317--31371 Score: 56
Period size: 1 Copynumber: 55.0 Consensus size: 1
31307 GGTAAGTTTA
* * * * * *
31317 TTTTCTTTTTTTTTTTTTTATTTTTTTTTTTTATTTTTTTGTATTTTTATTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
31372 ATTATTATTA
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.07, C:0.02, G:0.02, T:0.89
Consensus pattern (1 bp):
T
Found at i:31340 original size:13 final size:13
Alignment explanation
Indices: 31324--31371 Score: 69
Period size: 13 Copynumber: 3.5 Consensus size: 13
31314 TTATTTTCTT
31324 TTTTTTTTTTTTA
1 TTTTTTTTTTTTA
31337 TTTTTTTTTTTTA
1 TTTTTTTTTTTTA
31350 TTTTTTTGTATTTTTA
1 -TTTTTT-T-TTTTTA
31366 TTTTTT
1 TTTTTT
31372 ATTATTATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
13 13 0.41
14 6 0.19
15 7 0.22
16 6 0.19
ACGTcount: A:0.08, C:0.00, G:0.02, T:0.90
Consensus pattern (13 bp):
TTTTTTTTTTTTA
Found at i:31369 original size:23 final size:22
Alignment explanation
Indices: 31313--31413 Score: 89
Period size: 23 Copynumber: 4.5 Consensus size: 22
31303 AATAGGTAAG
*
31313 TTTA-TTTTCTTTTTT-TTTTT
1 TTTATTTTTATTTTTTATTTTT
*
31333 TTTATTTTTTTTTTTTATTTTT
1 TTTATTTTTATTTTTTATTTTT
*
31355 TTGTATTTTTATTTTTTATTATT
1 TT-TATTTTTATTTTTTATTTTT
* * * *
31378 ATTATTGTTTTATATATATATTTCT
1 TTTA-T-TTTTAT-TTTTTATTTTT
31403 TTTATTTTTAT
1 TTTATTTTTAT
31414 CTTAGGTATT
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
20 4 0.06
21 10 0.15
22 9 0.14
23 26 0.39
24 7 0.11
25 10 0.15
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (22 bp):
TTTATTTTTATTTTTTATTTTT
Found at i:31374 original size:13 final size:13
Alignment explanation
Indices: 31313--31380 Score: 64
Period size: 13 Copynumber: 4.9 Consensus size: 13
31303 AATAGGTAAG
*
31313 TTTATTTTCTTTTT
1 TTTATTTT-TATTT
*
31327 TTTTTTTTTATTT
1 TTTATTTTTATTT
*
31340 TTTTTTTTTATTTTT
1 TTTATTTTTA--TTT
31355 TTGTATTTTTATTT
1 TT-TATTTTTATTT
*
31369 TTTATTATTATT
1 TTTATTTTTATT
31381 ATTGTTTTAT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
13 23 0.49
14 12 0.26
15 5 0.11
16 7 0.15
ACGTcount: A:0.12, C:0.01, G:0.01, T:0.85
Consensus pattern (13 bp):
TTTATTTTTATTT
Found at i:31377 original size:16 final size:15
Alignment explanation
Indices: 31313--31413 Score: 93
Period size: 16 Copynumber: 6.7 Consensus size: 15
31303 AATAGGTAAG
31313 TTTATTTTCT-TTTTT
1 TTTATTTT-TATTTTT
31328 TTT-TTTTTA-TTTT
1 TTTATTTTTATTTTT
31341 TTT-TTTTTATTTTT
1 TTTATTTTTATTTTT
31355 TTGTATTTTTATTTTT
1 TT-TATTTTTATTTTT
*
31371 TATTATTATTATTGTTT
1 T-TTATTTTTATT-TTT
* * * *
31388 TATATATATATTTCT
1 TTTATTTTTATTTTT
31403 TTTATTTTTAT
1 TTTATTTTTAT
31414 CTTAGGTATT
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
13 14 0.20
14 10 0.14
15 14 0.20
16 28 0.39
17 5 0.07
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (15 bp):
TTTATTTTTATTTTT
Found at i:31546 original size:6 final size:6
Alignment explanation
Indices: 31526--31610 Score: 63
Period size: 6 Copynumber: 14.5 Consensus size: 6
31516 TTTAATATTC
* * *
31526 TTTTAT CTTTA- TTTTAT TTTTAT TTTT-G TTTTAC TTTTAT TTTT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* *
31571 TTATT-T TTTTAT TTTCAC TTTTAT TTTGT-T TTATTAT TTT
1 TT-TTAT TTTTAT TTTTAT TTTTAT TTT-TAT TT-TTAT TTT
31611 ATAAAATCCA
Statistics
Matches: 63, Mismatches: 9, Indels: 14
0.73 0.10 0.16
Matches are distributed among these distances:
5 13 0.21
6 45 0.71
7 5 0.08
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:31546 original size:17 final size:15
Alignment explanation
Indices: 31526--31605 Score: 72
Period size: 17 Copynumber: 5.1 Consensus size: 15
31516 TTTAATATTC
31526 TTTTATCTTTATTTTAT
1 TTTTAT-TTT-TTTTAT
*
31543 TTTTATTTTTGTTTTAC
1 TTTTA-TTTT-TTTTAT
31560 TTTTATTTTTTTTAT
1 TTTTATTTTTTTTAT
* * *
31575 TTTT-TTATTTTCAC
1 TTTTATTTTTTTTAT
31589 TTTTATTTTGTTTTAT
1 TTTTATTTT-TTTTAT
31605 T
1 T
31606 ATTTTATAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
14 11 0.22
15 12 0.24
16 9 0.18
17 18 0.35
18 1 0.02
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTATTTTTTTTAT
Found at i:31590 original size:29 final size:29
Alignment explanation
Indices: 31533--31612 Score: 101
Period size: 28 Copynumber: 2.8 Consensus size: 29
31523 TTCTTTTATC
* *
31533 TTTATTTTATTTT-TATTTTTGTTTTACT
1 TTTATTTTATTTTATTTTTTTATTTTACT
31561 TTTATTTT-TTTTATTTTTTTATTTTCACT
1 TTTATTTTATTTTATTTTTTTATTTT-ACT
* *
31590 TTTATTTTGTTTTATTATTTTAT
1 TTTATTTTATTTTATTTTTTTAT
31613 AAAATCCAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
27 4 0.09
28 18 0.39
29 11 0.24
30 13 0.28
ACGTcount: A:0.15, C:0.04, G:0.03, T:0.79
Consensus pattern (29 bp):
TTTATTTTATTTTATTTTTTTATTTTACT
Found at i:31739 original size:60 final size:60
Alignment explanation
Indices: 31671--31894 Score: 249
Period size: 59 Copynumber: 3.7 Consensus size: 60
31661 CCTTAAAAAT
* * *
31671 AAAAAGGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCA
1 AAAAAGGATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAATTTTCA
*
31731 AAAAAGG-TTTTTTTGAGGAAAAGTTAAAAGTATCAATTTT-CTTCGAAATTAAAATTTTCA
1 AAAAAGGATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAATT-AAATTTTCA
* * * *
31791 AAAAA--ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTTCA
1 AAAAAGGATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAA-TTTTCA
** * * * *
31850 AAAACAAAAATATTTTCAGGGAAAAATTGAAAGTATCAATTTTCC
1 AAAA-AGGATTTTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
31895 CTGCACAAAA
Statistics
Matches: 141, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
58 6 0.04
59 82 0.58
60 24 0.17
62 5 0.04
63 24 0.17
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (60 bp):
AAAAAGGATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAATTTTCA
Found at i:35648 original size:181 final size:178
Alignment explanation
Indices: 35341--38062 Score: 1310
Period size: 181 Copynumber: 15.3 Consensus size: 178
35331 AATAATTTCA
* * * * *
35341 AAATAGTTATGAATTATTTGAACAATTAGT-TATTTCAAATTC-TTATGACTTTTTGTTTTGTCA
1 AAATAGTTATG-ACTATTTGAATAATTA-TCTATTTCAAA-TCATTATGACCTTTTGGTTTGCCA
* * * ** * * *
35404 TAAAACAATTATTT-TGTTCATAC-TCCTTATTC-GATACAAATAATATTAACTTATTAATATTT
63 TAAAACAATTGTTTCTATTCACACAAGCTTATTCAAATA-AAATAATACTAATTTATTAATATTT
*
35466 CAAGAATTAATAAGTAAAAGATTTAAAAATAAATATGTTTACCAAACAAGTTC
127 CAA-AATTAATAAGTAAAAGATTTAAAAATAAATATGTTTACTAAACAAGTTC
* *
35519 AAATAGTAATAACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGGTTT-CATCAT
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGGTTTGC--CAT
* * * * * *
35583 AAAACAATTGTATCAATTTACATAAGCTTATTCAAAATAAAATAATACTAACTTATTACTATTTC
64 AAAACAATTGTTTCTATTCACACAAGCTTATTC-AAATAAAATAATACTAATTTATTAATATTTC
* * * * *
35648 AAAAATTGATGAGTAAGAGATTTAAAAAATGAATATGTTTTACTGAACAAGTTC
128 -AAAATTAATAAGTAAAAGATTT-AAAAATAAATATG-TTTACTAAACAAGTTC
** * * *
35702 AAATAGTTAAAAC--TTTGAACAATTGTCTATTTCAAATCATTATGACC-TTTGTTTTGCCATAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGGTTTGCCATAA
* * *
35764 AACAATTGTTTCTATTCATACAAGCTTATTTCAAATAAAATAATA-TAAATTTATCAATATTCCA
66 AACAATTGTTTCTATTCACACAAGCTTA-TTCAAATAAAATAATACT-AATTTATTAATATTTCA
* ** * * *
35828 AAGATTAACAAGTAAAA-ATTTAAACAATAAATCCGTTTTCTGAACATGTTC
129 AA-ATTAATAAGTAAAAGATTTAAA-AATAAATATGTTTACTAAACAAGTTC
* ** *
35879 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGGTTATGACCTTTTGTTTTGCCATA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAA-TCATTATGACCTTTTGGTTTGCCATA
* * * * * *
35944 AACCAATTGTTTCTATTCATAAAAGCTTATTTAGAATAAAATAACT-CTAATTTATTAAAATTCC
65 AAACAATTGTTTCTATTCACACAAGCTTATTCA-AATAAAATAA-TACTAATTTATTAATATT-T
* * * * *
36008 CAAAATTAATAAATAAGAGATTTAAAAAATAAATTTGTTTACTTAGCAAGTTC
127 CAAAATTAATAAGTAAAAGATTT-AAAAATAAATATGTTTACTAAACAAGTTC
* * * * * * * * * *
36061 AAACAATTATGACTATTTAAATAGTTATTTATTTCAAATTAGTATGATCTTTTGTTTTGTCATAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGGTTTGCCATAA
* ** * *
36126 AACAAGTGTTTCTATTCACACAAAATTATTCAAATAAAATAATACTAATTTCTTAATATCTTGAA
66 AACAATTGTTTCTATTCACACAAGCTTATTCAAATAAAATAATACTAATTTATTAATAT-TTCAA
* * *
36191 AATTAATAAG----AGATTTAAAAACTAAATTTGTTTACCAAACTAGTTC
130 AATTAATAAGTAAAAGATTTAAAAA-TAAATATGTTTACTAAACAAGTTC
* * * * * * *
36237 AAATAGTTATGATTATTTGAATAACTATTTATCTT-AAATCAGTATGA-TTTTTGTTTTGTCATA
1 AAATAGTTATGACTATTTGAATAATTATCTAT-TTCAAATCATTATGACCTTTTGGTTTGCCAT-
* * * * * * * * * * *
36300 AAAAAAATTGTTTCTATTCATACAAACATATTTAGAGTAAAATATTGCTAAATCAATAATATTCT
64 AAAACAATTGTTTCTATTCACACAAGCTTATTCA-AATAAAATAATACTAATTTATTAATATT-T
* * * * * * * *
36365 AAAAATT--TAA--AAGAGGTTTAAAAAATAAATGTATTTGCCGAACCAA-TTC
127 CAAAATTAATAAGTAAAAGATTT-AAAAATAAATATGTTT-ACTAAACAAGTTC
* * * * *
36414 AAATAGTTAAGACTGTTAGAATAATTATCTATTTCAAATCATTCTAACCTTTT-GTTT--CAGTT
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGGTTTGCCA--T
* * * * *
36476 CATAC-A-TG---C--TT------A---T-TTGAAATAAAATAATACTATTTTATTAACA-TTCA
64 AAAACAATTGTTTCTATTCACACAAGCTTATTCAAATAAAATAATACTAATTTATTAATATTTC-
* * * * *
36523 AAAAATTAATAAG-CAAAGAATTTTAAAAAATAAATCTATTTACGAAACAAGTTT
128 -AAAATTAATAAGTAAAAG-A-TTT-AAAAATAAATATGTTTACTAAACAAGTTC
* * * * * * *
36577 AAATACTTTTGACTATTTGAATAATTATCTATTTAAAAT-TTTCATGACCTTTTGTTTTGTCAAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATT-ATGACCTTTTGGTTTGCCATA
* * * * *
36641 AAACAATTGTTTC-A-T-A-A-AAGCGTATCCAAAATAAAATAATATTAGTTTATTAATACTTCA
65 AAACAATTGTTTCTATTCACACAAGCTTATTC-AAATAAAATAATACTAATTTATTAATATTTC-
*** **** * **
36701 AAAATTTGGAAGCCGGAGATTTAAAACATATATCA-GTTTA-TCAAATTAGTTC
128 AAAATTAATAAGTAAAAGATTTAAAA-ATAAAT-ATGTTTACT-AAACAAGTTC
* * * * * * * * *
36753 AAATAGTTATGGC-AGTTCGAACAAATATCT-TGTTCAAAACATTTTGAACTTTTGCTTTGTCAT
1 AAATAGTTATGACTA-TTTGAATAATTATCTAT-TTCAAATCATTATGACCTTTTGGTTTGCCAT
* * * * *
36816 AAAACAATTGTTTTTCA-TCATAAAAGCCTATTCAAAATAAAATAATA-TGAATTTATTACTATT
64 AAAACAATTGTTTCT-ATTCACACAAGCTTATTC-AAATAAAATAATACT-AATTTATTAATATT
* * * * * * * * *
36879 T-AAAA--AATAAATAAATA-A-ATAGGAGAT-TATTTGTTTATCGAACCAA-TTT
126 TCAAAATTAATAAGTAAA-AGATTTA-AAAATAAATATGTTTA-CTAAACAAGTTC
* * * * * * * * * ** *
36928 AAATAATAATGACTATTTGAACAATTATGTATTTCAAGTTATTATAACATTTTGTTTTGTTATTA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGGTTTGCCATAA
* * * * ** * * * * *
36993 AAGAATTATTTATGTTCATGCAAGCTTATTGAAAT-AAATAATACCAATCTAATAATATTATGAA
66 AACAATTGTTTCTATTCACACAAGCTTATTCAAATAAAATAATACTAATTTATTAATATT-TCAA
* * * ** * * *
37057 AATTAATAAACTAAGAGATTTGAAAAATAAATTTGTTTGTTGAACAAATTT
130 AATTAAT-AAGTAAAAGATTT-AAAAATAAATATGTTTACTAAACAAGTTC
* * * * * * * * *
37108 AAAGAGTTAAGGCTATATGAATAATTATCTA-TTCAAAGT-GTTATGTCCTTTTGTTTTGTCGTA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAA-TCATTATGACCTTTTGGTTTGCCATA
* * * * * * * * * *
37171 AAACAAATGTTTTTGTTCATATAAGTTTGTTTAGAATAAAATAATATTAATTTATTAATATTTTA
65 AAACAATTGTTTCTATTCACACAAGCTTATTCA-AATAAAATAATACTAATTTATTAATA-TTTC
* * * * **
37236 AAAATT-AT---TAAAATATTTAAAATATAAATTTATTTACCAAATTAGTTC
128 AAAATTAATAAGTAAAAGATTTAAAA-ATAAATATGTTTACTAAACAAGTTC
* * * * * * * * * * *
37284 AATTAGTTATAACAATTTAAACAATTATTTATTTCATATCTTTATGACCATTTGTTTTGTCATAA
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGGTTTGCCATAA
* * ** ** * * *
37349 AACAACTATTTCTATT-A-ATGTAGTCTTATTTGGAATAAAGTAATGCTAATATATTAATATTTT
66 AACAATTGTTTCTATTCACA-CAAG-CTTA-TTCAAATAAAATAATACTAATTTATTAATA-TTT
* ** * ** * *
37412 AAAAATTAATAAGTAATGGATTTAAAAAAAATAAATTTGTTGGCCTGACCAA--T-
127 CAAAATTAATAAGTAAAAGATTT---AAAAATAAATATGTT-TACTAAACAAGTTC
* * * ** * *
37465 ATAATAGTTATGACTATTTGAACAATTGTCTATTTTAAATCATTATGACCTTTTATTTTGTCACA
1 A-AATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGGTTTGCCATA
* * * * * * * *
37530 AAATAATTGTTTCTGTTCATATGAA-CTTATTTAAAATAAGATAATTCTAATTTATTAATATTCC
65 AAACAATTGTTTCTATTCACA-CAAGCTTA-TTCAAATAAAATAATACTAATTTATTAATATTTC
* ** * * * *
37594 AAAAATTAATAAATAAGGGATTCAAAAACTAAATTTGTTTTATTAAA-AA-TTT
128 -AAAATTAATAAGTAAAAGATTTAAAAA-TAAATATG-TTTACTAAACAAGTTC
*** * ** * * *
37646 AAATAGTTATGACTATTTGAACGCGTTACCTATTTCAAATCACCATAACCTTTTGTTTTGTCATA
1 AAATAGTTATGACTATTTGAA-TAATTATCTATTTCAAATCATTATGACCTTTTGGTTTGCCATA
* * * * * *
37711 AAATAATTTTTTCTATTCCCTGCAAGCTTATTTCAATTAAAATAATACAAATTTATT-ATCATTT
65 AAACAATTGTTTCTATTCAC-ACAAGCTTA-TTCAAATAAAATAATACTAATTTATTAAT-ATTT
* * * *
37775 AGAAAATTAATAAGTAAAAGATTT-AAAATAAATCTATTTA-TCAAATAAGTTC
127 -CAAAATTAATAAGTAAAAGATTTAAAAATAAATATGTTTACT-AAACAAGTTC
* * * ** * * **
37827 AAATAGTTATGACTATTTGAACTTA-TAT-TTTTTTAAATTGTTATGACATTTTGTTTTGTTATA
1 AAATAGTTATGACTATTTGAA-TAATTATCTATTTCAAATCATTATGACCTTTTGGTTTGCCATA
* * * * *
37890 AAACAAATTGTTTTTATTCATACAAGCTTATTCAGATTAAAATAATATTAGTTTATTAATATTTT
65 AAAC-AATTGTTTCTATTCACACAAGCTTATTCA-AATAAAATAATACTAATTTATTAATA-TTT
* * * * *
37955 GGACAATGTAATAAGTAGAAGATTTTAAAAATAAATATGTTTACTGAACAAGTTT
127 -CAAAAT-TAATAAGTAAAAGA-TTTAAAAATAAATATGTTTACTAAACAAGTTC
* * * * ** *
38010 AAATAGTCATAATTATTTAAATAATTATCTATTTCAAATTGTTATGATCTTTT
1 AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTT
38063 ATTTCATCAT
Statistics
Matches: 1956, Mismatches: 443, Indels: 284
0.73 0.17 0.11
Matches are distributed among these distances:
156 1 0.00
157 1 0.00
158 24 0.01
159 3 0.00
160 4 0.00
161 3 0.00
162 9 0.00
163 63 0.03
164 6 0.00
165 1 0.00
166 4 0.00
169 4 0.00
171 1 0.00
172 1 0.00
173 19 0.01
174 7 0.00
175 118 0.06
176 233 0.12
177 269 0.14
178 76 0.04
179 220 0.11
180 169 0.09
181 361 0.18
182 247 0.13
183 80 0.04
184 32 0.02
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (178 bp):
AAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTGGTTTGCCATAA
AACAATTGTTTCTATTCACACAAGCTTATTCAAATAAAATAATACTAATTTATTAATATTTCAAA
ATTAATAAGTAAAAGATTTAAAAATAAATATGTTTACTAAACAAGTTC
Found at i:36027 original size:360 final size:355
Alignment explanation
Indices: 35358--41419 Score: 1550
Period size: 363 Copynumber: 17.2 Consensus size: 355
35348 TATGAATTAT
* * *
35358 TTGAACAATTAGT-TATTTCAAATTC-TTATGACTTTTTGTTTTGTCATAAAACAATTATTT-TG
1 TTGAACAATTA-TCTATTTCAAA-TCATTATGAC-CTTTGTTTTGTCATAAAACAATTGTTTCTA
** * *
35420 TTCATAC-TCCTTATTC-GATACAAATAATATTAACTTATTAATATTTC-AAGAATTAATAAGTA
63 TTCATACAAACTTATTCAAATA-AAATAATA-TAATTTATTAATATTTCAAAG-ATTAATAAGTA
* * *
35482 AAAGATTTAAAAATAAATATGTTTACCAAACAAGTTCAAATAGTAATAACTATTTGAATAATTAT
125 AAA-ATTTAAAAATAAATATGTTTACCAAACATGTTCAAATAGTTATGACTATTTGAATAATTAT
* * * * * * *
35547 CTATTTCAAATCA-TTATGACCTTTTGGTTT-CATCATAAAACAATTGTATCAATTTACATAAGC
189 CTATTTCAAATTAGTTATGACCTTTTGTTTTGC--CATAAAACAATTGTTTCTATTCATAAAAGC
* * * * * *
35610 TTATTCAAAATAAAATAATACTAACTTATTACTATTTCAAAAATTGATGAGTAAGAGATTTAAAA
252 TTATTTAGAATAAAATAATACTAAATTATTAATATTCCAAAAATT-AT-AATAAGAGATTTAAAA
*
35675 AATGAATATGTTTTACTGAACAAGTTCAAATAGTTAAAACT-
315 AAT-AATATGTTTTACTGAACAAGTTCAAATAGTTAAGACTA
* *
35716 TTGAACAATTGTCTATTTCAAATCATTATGACCTTTGTTTTGCCATAAAACAATTGTTTCTATTC
1 TTGAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCATAAAACAATTGTTTCTATTC
* * * *
35781 ATACAAGCTTATTTCAAATAAAATAATATAAATTTATCAATATTCCAAAGATTAACAAGTAAAAA
66 ATACAAACTTA-TTCAAATAAAATAATAT-AATTTATTAATATTTCAAAGATTAATAAGTAAAAA
** * ** *
35846 TTTAAACAATAAATCCGTTTTCTGAACATGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
129 TTTAAA-AATAAATATGTTTACCAAACATGTTCAAATAGTTATGACTATTTGAATAATTATCTAT
* *
35911 TTCAAATTGGTTATGACCTTTTGTTTTGCCATAAACCAATTGTTTCTATTCATAAAAGCTTATTT
193 TTCAAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATTCATAAAAGCTTATTT
* * *
35976 AGAATAAAATAACT-CTAATTTATTAAAATTCCCAAAATTAATAAATAAGAGATTTAAAAAATAA
258 AGAATAAAATAA-TACTAAATTATTAATATTCCAAAAATT-AT-AATAAGAGATTTAAAAAATAA
* * * * * *
36040 -ATTTGTTTACTTAGCAAGTTCAAACAATTATGACTA
320 TATGT-TTTACTGAACAAGTTCAAATAGTTAAGACTA
* * * * * *
36076 TTTAA-ATAGTTATTTATTTCAAATTAGTATGATCTTTTGTTTTGTCATAAAACAAGTGTTTCTA
1 TTGAACA-A-TTATCTATTTCAAATCATTATGA-CCTTTGTTTTGTCATAAAACAATTGTTTCTA
* * * *
36140 TTCACACAAAATTATTCAAATAAAATAATACTAATTTCTTAATATCTTGAAA-ATTAATAAG---
63 TTCATACAAACTTATTCAAATAAAATAATA-TAATTTATTAATAT-TTCAAAGATTAATAAGTAA
* * * *
36201 AGATTTAAAAACTAAATTTGTTTACCAAAC-TAGTTCAAATAGTTATGATTATTTGAATAACTAT
126 AAATTTAAAAA-TAAATATGTTTACCAAACAT-GTTCAAATAGTTATGACTATTTGAATAATTAT
* * * * *
36265 TTATCTT-AAATCAG-TATGA-TTTTTGTTTTGTCATAAAAAAAATTGTTTCTATTCATACAAA-
189 CTAT-TTCAAATTAGTTATGACCTTTTGTTTTGCCAT-AAAACAATTGTTTCTATTCATA-AAAG
* * * * * * * *
36326 CATATTTAGAGTAAAATATTGCTAAATCAATAATATTCTAAAAATT-TAA-AAGAGGTTTAAAAA
251 CTTATTTAGAATAAAATAATACTAAATTATTAATATTCCAAAAATTATAATAAGAGATTTAAAAA
* * *
36389 ATAA-ATGTATTTGCCGAACCAA-TTCAAATAGTTAAGACTG
316 ATAATATGT-TTTACTGAA-CAAGTTCAAATAGTTAAGACTA
* * * *
36429 TTAGAATAATTATCTATTTCAAATCATTCTAACC----TTTTGT--T---TC-A--G------TT
1 TT-GAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCATAAAACAATTGTTTCTATT
** * * * * *
36476 CATACATGCTTATTTGAAATAAAATAATACTATTTTATTAACA-TTCAAAAAATTAATAAGCAAA
65 CATACAAACTTA-TTCAAATAAAATAATA-TAATTTATTAATATTTC-AAAGATTAATAAGTAAA
* * * * * * *
36540 GAATTTTAAAAAATAAATCTATTTACGAAACAAGTTTAAATACTTTTGACTATTTGAATAATTAT
127 -AA-TTT-AAAAATAAATATGTTTACCAAACATGTTCAAATAGTTATGACTATTTGAATAATTAT
* * * *
36605 CTATTTAAAATT--TTCATGACCTTTTGTTTTGTCAAAAAACAATTG----T-TTCATAAAAGCG
189 CTATTTCAAATTAGTT-ATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATTCATAAAAGCT
** * * ** ***
36663 TATCCAAAATAAAATAATATTAGTTTATTAATACTT-CAAAAATT-TGGAAGCCGGAGATTTAAA
253 TATTTAGAATAAAATAATACTAAATTATTAATA-TTCCAAAAATTAT--AA-TAAGAGATTTAAA
* * * *
36726 ACAT-ATATCAG-TTTA-TCAA-ATTAGTTCAAATAGTTATGGC-A
314 AAATAATAT--GTTTTACTGAACA--AGTTCAAATAGTTAAGACTA
* * * * * *
36767 GTTCGAACAAATATCT-TGTTCAAAACATTTTGAACTTTTGCTTTGTCATAAAACAATTGTTTTT
1 -TT-GAACAATTATCTAT-TTCAAATCATTATG-ACCTTTGTTTTGTCATAAAACAATTGTTTCT
* * *
36831 CA-TCATA-AAAGCCTATTCAAAATAAAATAATATGAATTTATTACTATTT-AAA-A--AATAAA
62 -ATTCATACAAA-CTTATTC-AAATAAAATAATAT-AATTTATTAATATTTCAAAGATTAATAAG
* * * * * * * * * *
36890 TAAATAA-ATAGGAGAT-TATTTGTTTATCGAACCAAT-TT-AAATAATAATGACTATTTGAACA
123 TAAA-AATTTA-AAAATAAATATGTTTA-CCAAAC-ATGTTCAAATAGTTATGACTATTTGAATA
* * * * ** * * * * * **
36951 ATTATGTATTTCAAGTTA-TTATAACATTTTGTTTTGTTATTAAAGAATTATTTATGTTCATGCA
184 ATTATCTATTTCAAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATTCATAAA
* * * ***
37015 AGCTTATTGA-AAT-AAATAATAC-CAATCTAATAATATTATGAAAATTAATAAACTAAGAGATT
249 AGCTTATTTAGAATAAAATAATACTAAAT-TATTAATATTCCAAAAATT-AT-AA-TAAGAGATT
* * * * * *
37077 TGAAAAATAAATTTGTTTGT--TGAACAAATTTAAAGAGTTAAGGCTA
310 TAAAAAAT-AATATGTTT-TACTGAACAAGTTCAAATAGTTAAGACTA
* * * * * * *
37123 TATGAATAATTATCTA-TTCAAAGT-GTTATGTCCTTTTGTTTTGTCGTAAAACAAATGTTTTTG
1 T-TGAACAATTATCTATTTCAAA-TCATTATGACC-TTTGTTTTGTCATAAAACAATTGTTTCTA
* ** * * * *
37186 TTCATATAAGTTTGTTTAGAATAAAATAATATTAATTTATTAATATTTTAAAAATT-AT---TAA
63 TTCATACAAACTTATTCA-AATAAAATAATA-TAATTTATTAATATTTCAAAGATTAATAAGTAA
* * * * * * * *
37247 AATATTTAAAATATAAATTTATTTACCAAA-TTAGTTCAATTAGTTATAACAATTTAAACAATTA
126 AA-ATTTAAAA-ATAAATATGTTTACCAAACAT-GTTCAAATAGTTATGACTATTTGAATAATTA
* * * * * * * **
37311 TTTATTTCATATCT--TTATGACCATTTGTTTTGTCATAAAACAACTATTTCTATTAAT-GTAGT
188 TCTATTTCAAAT-TAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATTCATAAAAG-
* * * **
37373 CTTATTTGGAATAAAGTAATGCT-AATATATTAATATTTTAAAAATTAATAAGTAATG-GATTTA
251 CTTATTTAGAATAAAATAATACTAAAT-TATTAATATTCCAAAAATT-ATAA-TAA-GAGATTT-
* *** * *
37436 AAAAAAATAAATTTGTTGGCCTGACCAA--T-ATAATAGTTATGACTA
311 -AAAAAAT-AATATGTTTTACTGAACAAGTTCA-AATAGTTAAGACTA
* * * * * *
37481 TTTGAACAATTGTCTATTTTAAATCATTATGACCTTTTATTTTGTCACAAAATAATTGTTTCTGT
1 -TTGAACAATTATCTATTTCAAATCATTATGACC-TTTGTTTTGTCATAAAACAATTGTTTCTAT
** * * * * * *
37546 TCATATGAACTTATTTAAAATAAGATAATTCTAATTTATTAATATTCCAAAAATTAATAAATAAG
64 TCATACAAACTTA-TTCAAATAAAATAA-TATAATTTATTAATATTTCAAAGATTAATAAGTAA-
** * * ** * ***
37611 GGATTCAAAAACTAAATTTGTTTTATTAAAAAT-TT-AAATAGTTATGACTATTTGAACGCGTTA
126 AAATTTAAAAA-TAAATATG-TTTACCAAACATGTTCAAATAGTTATGACTATTTGAA-TAATTA
* * ** * * * * * **
37674 CCTATTTCAAATCA-CCATAACCTTTTGTTTTGTCATAAAATAATTTTTTCTATTCCCTGCAAGC
188 TCTATTTCAAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATT-CATAAAAGC
* * *
37738 TTATTTCA-ATTAAAATAATAC-AAATTTATT-ATCATT-TAGAAAATTAATAAGTAAAAGATTT
252 TTATTT-AGAATAAAATAATACTAAA-TTATTAAT-ATTCCA-AAAATT-ATAA-TAAGAGATTT
* * * *
37799 --AAAATAA-ATCTATTTA-TCAAATAAGTTCAAATAGTTATGACTA
311 AAAAAATAATATGT-TTTACT-GAACAAGTTCAAATAGTTAAGACTA
* * * ** * * *
37842 TTTGAAC--TTATATTTTTTTAAATTGTTATGACATTTTGTTTTGTTATAAAACAAATTGTTTTT
1 -TTGAACAATTAT-CTATTTCAAATCATTATGAC-CTTTGTTTTGTCATAAAAC-AATTGTTTCT
* * * * *
37905 ATTCATACAAGCTTATTCAGATTAAAATAATATTAGTTTATTAATATTTTGGACA-ATGTAATAA
62 ATTCATACAAACTTATTCA-AATAAAATAATA-TAATTTATTAATA-TTT-CAAAGAT-TAATAA
* ** * * * * * *
37969 GTAGAAGATTTTAAAAATAAATATGTTTACTGAACAAGTTTAAATAGTCATAATTATTTAAATAA
122 GTA-AA-AATTTAAAAATAAATATGTTTACCAAACATGTTCAAATAGTTATGACTATTTGAATAA
* * *** * **
38034 TTATCTATTTCAAATT-GTTATGATCTTTTATTTCATCATAAAACAATT-TATTAATATT-ATTT
185 TTATCTATTTCAAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGT-TT-CTATTCATAA
* * * * ** * * * * * ** * * *
38096 TATC-AACATTCCAA-AAATTAATAAGTAAATGATTTAAAAAAT--AAATCTGTTTACTGAGTA-
248 AAGCTTA-TTTAGAATAAAATAAT-ACTAAATTA-TT-AATATTCCAAAAAT-TATAATAAG-AG
* * * * * * * ** * **
38156 AGTTCAAATAGTTATAAGTGTT--TGATCAA-TT-ATTTATGTCAAATGGTTA
307 A-TTTAAAAAATAATATGTTTTACTGAACAAGTTCAAATA-GT-TAA-GACTA
* * ** * * ** * * *
38205 -TGATC--TT-T-TGTTT--TGTCATAAAG-CAATTG-TTTCT-ATTCACACAA--G-TT-TATT
1 TTGAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCA-TAAAACAATTGTTTCTATT
* ** * * * * ** ** * *
38256 CAGAATAAAAAAATATT-AATTTATTAATATTCTAA-AAATTAATAGGT--AGGA--AAT--TTA
65 C---ATACAAACTTATTCAA-ATA-AAATAATATAATTTATTAATATTTCAAAGATTAATAAGTA
* * * * * * * * * *
38313 AAAA---ATAAAT--CTA--CTTATCGAACAAGTTCAAATAGTCATGTCTA-TTGAACAATTGTC
125 AAAATTTAAAAATAAATATGTTTACCAAACATGTTCAAATAGTTATGACTATTTGAATAATTATC
* * * *
38370 TATTTCAAATT-GTTATGACCTTCTATTTTGTCATAAAACAATTGTTTCTGTTCATGCAAAA--T
190 TATTTCAAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATTCAT--AAAAGCT
* * * * ** * * *
38432 TATTCAAAATAAAATAATATTGACCTATTAATAATT--GAAAA-T-TAATAAGAGATTTGAAAAC
253 TATTTAGAATAAAATAATACTAAATTATTAAT-ATTCCAAAAATTATAATAAGAGATTTAAAAAA
* * *
38493 TAA-ATTTATTTACT-AACACAGTTGAAATAGTTATA-ACAA
317 TAATATGT-TTTACTGAACA-AGTTCAAATAGTTA-AGACTA
* * * * *
38532 TTTGAATAATTAT-TATCTT-AAATCATTATGATCTTT-ATTTGTCATAAAGCAATTGTTTCTTT
1 -TTGAACAATTATCTAT-TTCAAATCATTATGACCTTTGTTTTGTCATAAAACAATTGTTTCTAT
* * * * * *
38594 TCATGCAAGCTTAATCAAATTAAAATAATACAAATTTAATAATATTTCAAAAATTAATAAGTAAG
64 TCATACAAACTTATTCAAA-TAAAATAATA-TAATTTATTAATATTTCAAAGATTAATAAGTAA-
* * * * * *
38659 AGATTTAAAAAATAAATGTGTTTGTCGAACCA-GTTCAAATAGTTAAGACTA-TT---TAA--A-
126 AAATTT-AAAAATAAATATGTTT-ACCAAACATGTTCAAATAGTTATGACTATTTGAATAATTAT
* * * * ** * * *
38716 C-AATT--AATTA--T-T---C----GTTTTGTCATAGACCAATTGTTTCTGGTCATACATGCAT
189 CTATTTCAAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATTCATAAAAGCTT
* * * ** * * *
38768 ATTCA-AA-ATAGT--TA-TGACCTT-TTGATAAGTACAAATAATTATAAGTAAGAGATTTAAAA
254 ATTTAGAATAAAATAATACT-AAATTATTAAT-ATTCCAAA-AATTATAA-TAAGAGATTTAAAA
* * *
38827 AATAA-ATGTGTTT-GTCGAACCATTTCAAATAGTTAAGACTA
315 AATAATATGT-TTTACT-GAACAAGTTCAAATAGTTAAGACTA
* * ** * * * * *
38868 TTAGAATAATTATCTGTTTCAAATTGTTATAATCTTTGTTTAGTCATAAAA-AATTTATTTCAAT
1 TT-GAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCATAAAACAA-TTGTTTCTAT
* * * * * *
38932 TCATACGAGCTTAATTTAAAATAAAATAATACTAATTTATTAACA-TTCAAAAATTAATAAGCAT
64 TCATACAAACTT-A-TTCAAATAAAATAATA-TAATTTATTAATATTTCAAAGATTAATAAGTA-
* * * * ** * * *
38996 GAGATTTAAGAAAATAAATCTATTTACTGAACAAGTTCAAATAGATT-GGACTATTTGAAGAATA
125 AAAATTT-A-AAAATAAATATGTTTACCAAACATGTTCAAATAG-TTATGACTATTTGAATAAT-
* * * ** *
39060 GATCTGACTATTTAAAGTT-GTTATGA-CATTTGTTTTATCATAAAACAATTGTTTCAATTCATA
186 TATCT-A-T-TTCAAA-TTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATTCATA
* * * ** * **
39123 AGAAACTTATTCAAAATAAAATAATACTACTTTACTAATAGTT-TGAAAATTAATAAGTAAGAGA
247 A-AAGCTTATTTAGAATAAAATAATACTAAATTATTAATA-TTCCAAAAATT-ATAA-TAAGAGA
* * *
39187 TTTAAAAACTAAAATTGTTTT-TTGAACTAA-TTCAAATAGTTATA-ACTA
308 TTTAAAAAATAATA-TGTTTTACTGAAC-AAGTTCAAATAGTTA-AGACTA
* * * * * * * * * *
39235 TATGAACAAATGTCAACCTT-AAATCATTATGATCTTTGTTTTCTCGTATAATATTTGTTTC-AG
1 T-TGAACAATTATCTA-TTTCAAATCATTATGACCTTTGTTTTGTCATAAAACAATTGTTTCTA-
* * * * *
39298 TTCATA-TAAGTATATTCGAAATAAAATAAAATAAATTTATTAATATTTCAAAAATT-ATAATTA
63 TTCATACAAACT-TATTC-AAATAAAATAATAT-AATTTATTAATATTTCAAAGATTAATAAGTA
* * * * * * * * * * *
39361 GAGATTTTAGAAAATAATTTTATTTACTAGACCA-GTGCAAATAATTATAACTATTT-AACAATT
125 -AAAATTTA-AAAATAAATATGTTTACCA-AACATGTTCAAATAGTTATGACTATTTGAATAATT
* * * ** * * * * * *
39424 -CCTATTTCAAATCA-TTATTATTTTTTGTTTT-TCATAAAACAATTGTTTTTGTTAATATAAGT
187 ATCTATTTCAAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATTCATAAAAGC
* * * * * *
39486 TTGTTCAAAATAGAATAATACTAATTTATTAATATT-TAGAAAATTAATCAATAAGAGATTTAAA
252 TTATTTAGAATAAAATAATACTAAATTATTAATATTCCA-AAAATT-AT-AATAAGAGATTTAAA
* * * * * **
39550 AAGTGAATCTGTTTTACTAAACCAATTTTTAAATAGTTTTGACTA
314 AAAT-AATATGTTTTACTGAA-CAA-GTTCAAATAGTTAAGACTA
* * * * * * *
39595 TTTAAATAATTATCTATTTCAAAATCATTATAACCTTTTATTTTGTCATCAAACAATTGGTT-TG
1 -TTGAACAATTATCTATTTC-AAATCATTATGACC-TTTGTTTTGTCATAAAACAATTGTTTCTA
* ** ** * * **
39659 TTCATACTATTTTATTTGAATAAAATAATAATAATTTAATAATA-TTCAAAAATTTAATAACCAA
63 TTCATACAAACTTATTCAAATAAAATAAT-ATAATTTATTAATATTTCAAAGA-TTAATAA-GTA
* * ** * * * * * ** ** *
39723 GAAAATTAAAAAATAAATCTAATTACTGAATCA-GTTCAAATAATTAAGACAACATGAACGATTT
125 -AAAATTTAAAAATAAATATGTTTAC-CAAACATGTTCAAATAGTTATGACTATTTGAATAATTA
* * * * * * ** *
39787 TCTATTTCAAATCA-TTATGACCTTTTCTTTTGTCATAAAAGAATT-TTTTTGTTTGTACAAGCT
188 TCTATTTCAAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATTCATAAAAGCT
* * * * **
39850 TATTCT-GATTAAAATAATACCAATTTAATAATATTTTAAAAATTAATAAGTAAGAGATTTAAAA
253 TATT-TAGAATAAAATAATACTAAATTATTAATATTCCAAAAATT-ATAA-TAAGAGATTTAAAA
*
39914 AATAA-ATTTGTTTACCT-AATC-AGTTCAAATAGTTAAGACTA
315 AATAATATGT-TTTA-CTGAA-CAAGTTCAAATAGTTAAGACTA
* * * * *
39955 TTAGAATAATTATCTATATGAAATCATTTTGACCTTTGTTTAGTCATAAAACAATTGTTT-TAGT
1 TT-GAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCATAAAACAATTGTTTCTA-T
* * *
40019 TCGTACAAGCTTATTCAGAAT-AAAT--TAT--TTCTAATT--TA-TT--AACATT--TAA--AA
64 TCATACAAACTTATTCA-AATAAAATAATATAATT-T-ATTAATATTTCAAAGATTAATAAGTAA
* ** * * * * * * *
40070 AAA--T--AAAT--GTA--TTTACTGAATAAGTTCAAATAATTATTATTATTTGAACAATTCTCT
126 AAATTTAAAAATAAATATGTTTACCAAACATGTTCAAATAGTTATGACTATTTGAATAATTATCT
* * * * * * * * *
40127 ATTTAAAATCA-TTGTAACATTTTGATTTGTCATAAAACAATTGTTT-TAGTTAATACAAGCTTA
191 ATTTCAAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTA-TTCATAAAAGCTTA
** * * *
40190 GATGGAATAAAATAATACTAATTTATTAATATTTCAAAAA-T-TAATAAGAGATTTAAAAAATAA
255 TTTAGAATAAAATAATACTAAATTATTAATATTCCAAAAATTATAATAAGAGATTTAAAAAATAA
* ** * * *
40253 -ATCTGTTTACCAAACTAGTTTAAATAGTTATGACTA
320 TATGT-TTTACTGAACAAGTTCAAATAGTTAAGACTA
* * * * * *
40289 TTTGAACAATTATCAATCTCAAATCATTAAT-ATCTTTGTTTTGTCATAAAATAATTATTTATGA
1 -TTGAACAATTATCTATTTCAAATCATT-ATGACCTTTGTTTTGTCATAAAACAATTGTTTCT-A
* ** ** * * * *
40353 -TCATAGAATGTTATTCAGTTGAAAATAATACAAATTTAATAATATTCCAAAAATTAATAAGTAA
63 TTCATACAAACTTATTCAAAT-AAAATAATA-TAATTTATTAATATTTCAAAGATTAATAAGTAA
* ** *** * ** * *
40417 AGATTTAAAATATAAATGCGTTTGTTAAACCA-ATTCAAATAGTTAAAAACTATTAGAGTAAATT
126 AAATTTAAAA-ATAAATATGTTTACCAAA-CATGTTCAAATAGTT-ATGACTATTTGAAT-AATT
* * * * * * *
40481 ATCTATTTCAAATT-GTTCTGACCTTTT-TTGTAGTCATAAAATATTTGTTT-TCATATCTTATA
187 ATCTATTTCAAATTAGTTATGACCTTTTGTT-TTGCCATAAAACAATTGTTTCT-AT-TCATAAA
* * * * * * * *
40543 AGCTTATTCAGAATAAAATAAT-CCAATTTTATTAACATTCAAAAAATTAACAAGCAAAAGATTT
249 AGCTTATTTAGAATAAAATAATACTAA-ATTATTAATATTCCAAAAATT-ATAA-TAAGAGATTT
* * *
40607 GGAAAAAGAATATG-TTTACT-AAGCAAGTTCAAATAGTTATGACTA
311 -AAAAAATAATATGTTTTACTGAA-CAAGTTCAAATAGTTAAGACTA
* *
40652 TTTGAACAATTATTTATTT-AAATCATTATGACCTTTTGTTTTGACATAAAACAATTGTTTC-AG
1 -TTGAACAATTATCTATTTCAAATCATTATGACC-TTTGTTTTGTCATAAAACAATTGTTTCTA-
* * * * * *
40715 TTTATA-AAAGGTTATCCAAAATAAAATAATACTAATTTCTTAACATTTCAAAAAATTAATAAGG
63 TTCATACAAA-CTTATTC-AAATAAAATAATA-TAATTTATTAATATTTC-AAAGATTAATAA--
* * * ** ** * * *
40779 GT-AAAA---AAAGATAAA-ATTTTTACCGAACAAATTCAAATAGTTACAATTATTTGAACAAAT
122 GTAAAAATTTAAAAATAAATATGTTTACCAAACATGTTCAAATAGTTATGACTATTTGAATAATT
* * * * * ** * * * *
40839 GTCTA-TTGAAAATCGTT-TGACCTGTTGTTTTGTTACAAAACAATTGTTT-AAGTTCATATAGG
187 ATCTATTTCAAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTA-TTCATAAAAG
* * * * * *
40901 CTTATTCA-AAGTAAAAATGATACCAATTTATTAATATT-CAAAAAAT-TAATAAGTGATTTAAA
251 CTTATTTAGAA-T-AAAATAATACTAAATTATTAATATTCCAAAAATTATAATAAGAGATTTAAA
* * ** * * * * *
40963 AAATGAAT-CGCTTTACCAAATC-AGTTCAAAAAATTATGGCCA
314 AAAT-AATATGTTTTACTGAA-CAAGTTCAAATAGTTAAGACTA
* * * * * *
41005 TTTCAA-ATATTATCTATTTCAAATCGTTATTACCTTTTGTTTGGTCATATAACAATTGTTT-TT
1 -TTGAACA-ATTATCTATTTCAAATCATTATGACC-TTTGTTTTGTCATAAAACAATTGTTTCTA
**
41068 TATCATACAAGTTTATTCGAAATAAAATAATACTAATTTATT-A-A--TC-----TT--T---TA
63 T-TCATACAAACTTATTC-AAATAAAATAATA-TAATTTATTAATATTTCAAAGATTAATAAGTA
* * * *
41119 AAAA-TT---AATAAGAGATGTTTACCGAACCA-GTTTAAATAGTTATGACTATTTGAATAATTG
125 AAAATTTAAAAATAA-ATATGTTTACC-AAACATGTTCAAATAGTTATGACTATTTGAATAATTA
* * * * * ** * *
41179 TATATTTCAAA-TCGTTATAACATTTTGTTCTATCATAAAACAATTG-TT-TATTCATACAAGCA
188 TCTATTTCAAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATTCATAAAAGCT
* * * ** * *
41241 TA-TTCGCGATAAAATAATAACT-AATATAATAATATTTTAAAAATTAACAACTAAGAGATTTTA
253 TATTTAG-AATAAAATAAT-ACTAAAT-TATTAATATTCCAAAAATT-ATAA-TAAGAGATTTAA
* ** * * * * *
41304 AAAATAA-ATTTTTTTGTCAAACTAGTTCTAATAATTAACACTA
313 AAAATAATATGTTTTACT-GAACAAGTTCAAATAGTTAAGACTA
* * *
41347 TATTAACAATTATCTATTTCAAATCA-T-T----TTTGTTTTGTCATAAAACAATTTTTTCAATT
1 T-TGAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCATAAAACAATTGTTTCTATT
* *
41406 CATACTAGCTTATT
65 CATACAAACTTATT
41420 TGGAATAAAA
Statistics
Matches: 4242, Mismatches: 1017, Indels: 913
0.69 0.16 0.15
Matches are distributed among these distances:
325 2 0.00
326 10 0.00
327 10 0.00
328 4 0.00
329 10 0.00
330 20 0.00
331 66 0.02
332 38 0.01
333 15 0.00
334 133 0.03
335 170 0.04
336 76 0.02
337 115 0.03
338 148 0.03
339 166 0.04
340 115 0.03
341 36 0.01
342 58 0.01
343 13 0.00
344 14 0.00
345 9 0.00
346 8 0.00
347 6 0.00
348 12 0.00
349 21 0.00
350 12 0.00
351 85 0.02
352 31 0.01
353 145 0.03
354 201 0.05
355 70 0.02
356 165 0.04
357 241 0.06
358 313 0.07
359 249 0.06
360 330 0.08
361 234 0.06
362 191 0.05
363 343 0.08
364 135 0.03
365 51 0.01
366 44 0.01
367 108 0.03
368 16 0.00
369 3 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (355 bp):
TTGAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCATAAAACAATTGTTTCTATTC
ATACAAACTTATTCAAATAAAATAATATAATTTATTAATATTTCAAAGATTAATAAGTAAAAATT
TAAAAATAAATATGTTTACCAAACATGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
AAATTAGTTATGACCTTTTGTTTTGCCATAAAACAATTGTTTCTATTCATAAAAGCTTATTTAGA
ATAAAATAATACTAAATTATTAATATTCCAAAAATTATAATAAGAGATTTAAAAAATAATATGTT
TTACTGAACAAGTTCAAATAGTTAAGACTA
Found at i:37245 original size:18 final size:19
Alignment explanation
Indices: 37222--37257 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
37212 TAATATTAAT
*
37222 TTATTAATAT-TTTAAAAA
1 TTATTAAAATATTTAAAAA
37240 TTATTAAAATATTTAAAA
1 TTATTAAAATATTTAAAA
37258 TATAAATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TTATTAAAATATTTAAAAA
Found at i:38463 original size:180 final size:174
Alignment explanation
Indices: 38085--38727 Score: 540
Period size: 180 Copynumber: 3.6 Consensus size: 174
38075 AACAATTTAT
* * * * * *
38085 TAATATTATTTTATCAACATTCCAAAAATTAATAAGTAAATGATTTAAAAAATAAATCTGTTTAC
1 TAATATTAATTTATTAATATT-TAAAAATTAAT-AGTAGA-GATTTAAAAAATAAATCTATTTAC
** * * * *
38150 TGAGTAAGTTCAAATAGTTATAAGTGT-TTGATCAATTATTTATGTCAAATGGTTATGATCTTTT
63 -GAACAAGTTCAAATAGTTAT--GTCTATTGAACAATTA-TTATTTCAAATCGTTATGATC-TTT
* ** * *
38214 GTTTTGTCATAAAGCAATTGTTTCTATTCACACAAGTTTATTCAGAATAAAA
123 ATTTTGTCATAAAGCAATTGTTTCTATTCATGCAAGATTATTCAAAATAAAA
* * *
38266 AAATATTAATTTATTAATATTCTAAAAATTAATAGGTAGGAAATTTAAAAAATAAATCTACTTAT
1 TAATATTAATTTATTAATATT-TAAAAATTAATA-GTA-GAGATTTAAAAAATAAATCTATTTA-
* * * *
38331 CGAACAAGTTCAAATAGTCATGTCTATTGAACAATTGTCTATTTCAAATTGTTATGACCTTCTAT
62 CGAACAAGTTCAAATAGTTATGTCTATTGAACAATTAT-TATTTCAAATCGTTATGATCTT-TAT
* * *
38396 TTTGTCATAAAACAATTGTTTCTGTTCATGCAAAATTATTCAAAATAAAA
125 TTTGTCATAAAGCAATTGTTTCTATTCATGCAAGATTATTCAAAATAAAA
* ** * * * * * *
38446 TAATATTGACCTATTAATAATTGAAAATTAATA--AGAGATTTGAAAACTAAATTTATTTACTAA
1 TAATATTAATTTATTAATATTTAAAAATTAATAGTAGAGATTTAAAAAATAAATCTATTTACGAA
* ** * * *
38509 CACAGTTGAAATAGTTATAACAATTTGAATAATTATTATCTT-AAATCATTATGATCTTTA-TTT
66 CA-AGTTCAAATAGTTATGTCTA-TTGAACAATTATTAT-TTCAAATCGTTATGATCTTTATTTT
* * * *
38572 GTCATAAAGCAATTGTTTCTTTTCATGCAAGCTTAATCAAATTAAAA
128 GTCATAAAGCAATTGTTTCTATTCATGCAAGATTATTCAAAATAAAA
** * * * *
38619 TAATACAAATTTAATAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTGT
1 TAATATTAATTTATTAATATTT-AAAAATTAAT-AGT-AGAGATTTAAAAAATAAATCTATTT-A
* * * *
38684 CGAACCAGTTCAAATAGTTAAGACTATTTAAACAATTAATTATT
62 CGAACAAGTTCAAATAGTTATGTCTA-TTGAACAATT-ATTATT
38728 CGTTTTGTCA
Statistics
Matches: 371, Mismatches: 75, Indels: 35
0.77 0.16 0.07
Matches are distributed among these distances:
173 59 0.16
174 16 0.04
175 52 0.14
176 13 0.04
178 47 0.13
179 26 0.07
180 88 0.24
181 68 0.18
182 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (174 bp):
TAATATTAATTTATTAATATTTAAAAATTAATAGTAGAGATTTAAAAAATAAATCTATTTACGAA
CAAGTTCAAATAGTTATGTCTATTGAACAATTATTATTTCAAATCGTTATGATCTTTATTTTGTC
ATAAAGCAATTGTTTCTATTCATGCAAGATTATTCAAAATAAAA
Found at i:38749 original size:162 final size:158
Alignment explanation
Indices: 38569--38869 Score: 383
Period size: 158 Copynumber: 1.9 Consensus size: 158
38559 ATGATCTTTA
* ** * *
38569 TTTGTCATAAAGCAATTGTTTCTTTTCATGCAAGCTTAATCAAATTAAAATAAT-ACAAATTTAA
1 TTTGTCATAAACCAATTGTTTCTGGTCATACAAGCATAATCAAA--AAAATAATGAC-AATTTAA
38633 TAA-TATTTCAAA-AATTAATAAGTAAGAGATTTAAAAAATAAATGTGTTTGTCGAACCAGTTCA
63 TAAGTA---CAAATAATT-ATAAGTAAGAGATTTAAAAAATAAATGTGTTTGTCGAACCAGTTCA
38696 AATAGTTAAGACTATTTAAACAATTAATTATTCGT
124 AATAGTTAAGACTATTTAAACAATTAATTATTCGT
* * * * * * ** *
38731 TTTGTCATAGACCAATTGTTTCTGGTCATACATGCATATTCAAAATAGTTATGACCTTTTGATAA
1 TTTGTCATAAACCAATTGTTTCTGGTCATACAAGCATAATCAAAAAAATAATGACAATTTAATAA
*
38796 GTACAAATAATTATAAGTAAGAGATTTAAAAAATAAATGTGTTTGTCGAACCATTTCAAATAGTT
66 GTACAAATAATTATAAGTAAGAGATTTAAAAAATAAATGTGTTTGTCGAACCAGTTCAAATAGTT
38861 AAGACTATT
131 AAGACTATT
38870 AGAATAATTA
Statistics
Matches: 121, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
158 65 0.54
159 4 0.03
160 12 0.10
161 4 0.03
162 36 0.30
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.37
Consensus pattern (158 bp):
TTTGTCATAAACCAATTGTTTCTGGTCATACAAGCATAATCAAAAAAATAATGACAATTTAATAA
GTACAAATAATTATAAGTAAGAGATTTAAAAAATAAATGTGTTTGTCGAACCAGTTCAAATAGTT
AAGACTATTTAAACAATTAATTATTCGT
Found at i:39223 original size:186 final size:179
Alignment explanation
Indices: 38799--39228 Score: 433
Period size: 186 Copynumber: 2.3 Consensus size: 179
38789 TTGATAAGTA
* * * *
38799 CAAATAATT-ATAAGTAAGAGATTTAAAAAATAAATGTGTTTGTCGAACCATTTCAAATAGTTAA
1 CAAA-AATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATTGAA-CAATTCAAATAGTTAA
* *
38863 GACTATTAGAATAATTATCTGTTTCAAATTGTTATAATCTTTGTTTAGTCATAAAAAATTTATTT
64 GACTATTAGAAGAATGATCTGTTTCAAATTGTTATAATCTTTGTTTAGTCATAAAAAATTTATTT
* * * *
38928 CAATTCATACGAGCTTAATTTAAAATAAAATAATACTAATTTATTAACATT
129 CAATTCATAAGAACTTAATTCAAAATAAAATAATACTAATTTACTAACATT
* * * *
38979 CAAAAATTAATAAGCATGAGATTTAAGAAAATAAATCTATTTACTGAACAAGTTCAAATAGATT-
1 CAAAAATTAATAAGTAAGAGATTTAA-AAAATAAATCTGTTTATTGAACAA-TTCAAATAG-TTA
* * * *
39043 GGACTATTTGAAGAATAGATCTGACTATTTAAAGTTGTTATGA-CATTTGTTTTA-TCATAAAAC
63 AGACTATTAGAAGAAT-GATCTG--T-TTCAAA-TTGTTATAATC-TTTG-TTTAGTCATAAAA-
* * *
39106 AA-TTGTTTCAATTCATAAGAAACTT-ATTCAAAATAAAATAATACTACTTTACTAATAGTT
120 AATTTATTTCAATTCATAAG-AACTTAATTCAAAATAAAATAATACTAATTTACTAACA-TT
** * *
39166 TGAAAATTAATAAGTAAGAGATTTAAAAACTAAAAT-TGTTTTTTGAACTAATTCAAATAGTTA
1 CAAAAATTAATAAGTAAGAGATTTAAAAAAT-AAATCTGTTTATTGAAC-AATTCAAATAGTTA
39229 TAACTATATG
Statistics
Matches: 204, Mismatches: 29, Indels: 28
0.78 0.11 0.11
Matches are distributed among these distances:
179 4 0.02
180 21 0.10
181 38 0.19
182 7 0.03
184 1 0.00
185 8 0.04
186 85 0.42
187 40 0.20
ACGTcount: A:0.44, C:0.09, G:0.10, T:0.37
Consensus pattern (179 bp):
CAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATTGAACAATTCAAATAGTTAAGA
CTATTAGAAGAATGATCTGTTTCAAATTGTTATAATCTTTGTTTAGTCATAAAAAATTTATTTCA
ATTCATAAGAACTTAATTCAAAATAAAATAATACTAATTTACTAACATT
Found at i:39877 original size:180 final size:180
Alignment explanation
Indices: 39602--40042 Score: 487
Period size: 180 Copynumber: 2.5 Consensus size: 180
39592 CTATTTAAAT
* * ** * *
39602 AATTATCTATTTCAAAATCATTATAACCTTTTATTTTGTCATCAAACAATTGGTTTGTTCATACT
1 AATTATCTATTTC-AAATCATTATGACCTTTTATTTTGTCATAAAACAATTTTTTTGTTCGTACA
** *
39667 ATTTTATT-TGAATAAAATAATAATAATTTAATAATA-TTCAAAAATTTAATAACCAAGAAAATT
65 AGCTTATTCTGAATAAAATAATAACAATTTAATAATATTTCAAAAA-TTAATAACCAAGAAAATT
39730 AAAAAATAAATCTAATTA-CTGAATCAGTTCAAATAATTAAGACAACAT-GAAC
129 AAAAAATAAATCTAATTACCT-AATCAGTTCAAATAATTAAGACAA-ATAGAAC
* * * * *
39782 GATTTTCTATTTCAAATCATTATGACCTTTTCTTTTGTCATAAAAGAATTTTTTTGTTTGTACAA
1 AATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAATTTTTTTGTTCGTACAA
* * * ** * *
39847 GCTTATTCTGATTAAAATAATACCAATTTAATAATATTTTAAAAATTAATAAGTAAGAGATTTAA
66 GCTTATTCTGAATAAAATAATAACAATTTAATAATATTTCAAAAATTAATAACCAAGAAAATTAA
* ** * * * *
39912 AAAATAAATTTGTTTACCTAATCAGTTCAAATAGTTAAGACTATTAGAAT
131 AAAATAAATCTAATTACCTAATCAGTTCAAATAATTAAGACAAATAGAAC
* * * * * *
39962 AATTATCTATATGAAATCATTTTGACC-TTTGTTTAGTCATAAAACAATTGTTTTAGTTCGTACA
1 AATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAATT-TTTTTGTTCGTACA
*
40026 AGCTTATTCAGAATAAA
65 AGCTTATTCTGAATAAA
40043 TTATTTCTAA
Statistics
Matches: 216, Mismatches: 40, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
179 68 0.31
180 139 0.64
181 9 0.04
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (180 bp):
AATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAAAACAATTTTTTTGTTCGTACAA
GCTTATTCTGAATAAAATAATAACAATTTAATAATATTTCAAAAATTAATAACCAAGAAAATTAA
AAAATAAATCTAATTACCTAATCAGTTCAAATAATTAAGACAAATAGAAC
Found at i:40128 original size:157 final size:157
Alignment explanation
Indices: 39906--40230 Score: 370
Period size: 157 Copynumber: 2.1 Consensus size: 157
39896 TAAGTAAGAG
* * * * *
39906 ATTTAAAAAATAAATTTGTTTACCTAATCAGTTCAAATAGTTAAGACTATTAGAATAATTATCTA
1 ATTTAAAAAATAAATGTATTTACCTAATAAGTTCAAATAATTAAGACTATTAGAACAATTATCTA
* * * ** *
39971 TATGAAATCATTTTGAC-CTTTG-TTTAGTCATAAAACAATTGTTTTAGTTCGTACAAGCTTA-T
66 TATAAAATCATTGTAACACTTTGATTT-GTCATAAAACAATTGTTTTAGTTAATACAAGCTTAGA
* * *
40033 TCAGAATAAATTATTTCTAATTTATTAAC
130 T-AGAATAAAATAATACTAATTTATTAAC
** * * *
40062 ATTTAAAAAAATAAATGTATTTA-CTGAATAAGTTCAAATAATTATTATTATTTGAACAATTCTC
1 ATTT-AAAAAATAAATGTATTTACCT-AATAAGTTCAAATAATTAAGACTATTAGAACAATTATC
* *
40126 TATTTAAAATCATTGTAACATTTTGATTTGTCATAAAACAATTGTTTTAGTTAATACAAGCTTAG
64 TATATAAAATCATTGTAACACTTTGATTTGTCATAAAACAATTGTTTTAGTTAATACAAGCTTAG
* *
40191 ATGGAATAAAATAATACTAATTTATTAAT
129 ATAGAATAAAATAATACTAATTTATTAAC
*
40220 ATTTCAAAAAT
1 ATTTAAAAAAT
40231 TAATAAGAGA
Statistics
Matches: 140, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
156 6 0.04
157 67 0.48
158 63 0.45
159 4 0.03
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.41
Consensus pattern (157 bp):
ATTTAAAAAATAAATGTATTTACCTAATAAGTTCAAATAATTAAGACTATTAGAACAATTATCTA
TATAAAATCATTGTAACACTTTGATTTGTCATAAAACAATTGTTTTAGTTAATACAAGCTTAGAT
AGAATAAAATAATACTAATTTATTAAC
Found at i:40369 original size:334 final size:336
Alignment explanation
Indices: 39730--40370 Score: 767
Period size: 334 Copynumber: 1.9 Consensus size: 336
39720 CAAGAAAATT
* * * *
39730 AAAAAATAAATCTAATTACTGAATCAGTTCAAATAATTAAGACAACATGAACGATTTTCTATTTC
1 AAAAAATAAATCTAATTACTGAATAAGTTCAAATAATTAAGACAACATGAACAATTCTCTATTTA
* * * * * ** * * *
39795 AAATCATTATGACCTTTTCTTTTGTCATAAAAGAATTTTTTTGTTTGTACAAGCTTATTCTGATT
66 AAATCATTATAACATTTTCATTTGTCATAAAACAATTTTTTAGTTAATACAAGCTTAATCGGAAT
* *
39860 AAAATAATACCAATTTAATAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGT
131 AAAATAATACCAATTTAATAATATTTCAAAAATT-ATAAGTAAGAGATTTAAAAAATAAATCTGT
* * * * *
39925 TTACCTAATCAGTTCAAATAGTTAAGACTATTAGAATAATTATCTATATGAAATCATTTTGACCT
195 TTACCAAATCAGTTCAAATAGTTAAGACTATTAGAACAATTATCAATATCAAATCATTATGACCT
* * *
39990 TTGTTTAGTCATAAAACAATTGTTTTAGTTCGTACAAGCTTATTCAGAATAAATTATTTCTAATT
260 TTGTTTAGTCATAAAACAATTATTTTAGATCATACAAGCTTATTCAGAATAAATTATTTCTAATT
40055 TATTAACATTTA
325 TATTAACATTTA
* * ** ** **
40067 AAAAAATAAATGTATTTACTGAATAAGTTCAAATAATTATTATTATTTGAACAATTCTCTATTTA
1 AAAAAATAAATCTAATTACTGAATAAGTTCAAATAATTAAGACAACATGAACAATTCTCTATTTA
* *
40132 AAATCATTGTAACATTTTGATTTGTCATAAAACAATTGTTTTAGTTAATACAAGCTTAGAT-GGA
66 AAATCATTATAACATTTTCATTTGTCATAAAACAATT-TTTTAGTTAATACAAGCTTA-ATCGGA
* *
40196 ATAAAATAATACTAATTTATTAATATTTCAAAAA-T-TAA-TAAGAGATTTAAAAAATAAATCTG
129 ATAAAATAATACCAATTTAATAATATTTCAAAAATTATAAGTAAGAGATTTAAAAAATAAATCTG
* * * *
40258 TTTACCAAA-CTAGTTTAAATAGTTATGACTATTTGAACAATTATCAATCTCAAATCATTAAT-A
194 TTTACCAAATC-AGTTCAAATAGTTAAGACTATTAGAACAATTATCAATATCAAATCATT-ATGA
* * * *
40321 TCTTTGTTTTGTCATAAAATAATTA-TTTATGATCATAGAATG-TTATTCAG
257 CCTTTGTTTAGTCATAAAACAATTATTTTA-GATCATACAA-GCTTATTCAG
40371 TTGAAAATAA
Statistics
Matches: 254, Mismatches: 44, Indels: 15
0.81 0.14 0.05
Matches are distributed among these distances:
333 5 0.02
334 109 0.43
335 5 0.02
337 85 0.33
338 49 0.19
339 1 0.00
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (336 bp):
AAAAAATAAATCTAATTACTGAATAAGTTCAAATAATTAAGACAACATGAACAATTCTCTATTTA
AAATCATTATAACATTTTCATTTGTCATAAAACAATTTTTTAGTTAATACAAGCTTAATCGGAAT
AAAATAATACCAATTTAATAATATTTCAAAAATTATAAGTAAGAGATTTAAAAAATAAATCTGTT
TACCAAATCAGTTCAAATAGTTAAGACTATTAGAACAATTATCAATATCAAATCATTATGACCTT
TGTTTAGTCATAAAACAATTATTTTAGATCATACAAGCTTATTCAGAATAAATTATTTCTAATTT
ATTAACATTTA
Found at i:40638 original size:697 final size:696
Alignment explanation
Indices: 39398--40770 Score: 1493
Period size: 697 Copynumber: 2.0 Consensus size: 696
39388 TAGACCAGTG
* * ** *
39398 CAAATAATTATAACTATTTAACAATTCCTATTTCAAATCATTATTATTTTTTGTTTTTCATAAAA
1 CAAATAATTATAACTATTTAACAATTCCTATTTAAAATCATTATAACATTTTGTTTGTCATAAAA
* * * * *
39463 CAATTGTTTTTGTTAATATAAGTTTGTTCAAAATAGAATAATACTAATTTATTAATATTTAGAAA
66 CAATTGTTTTAGTTAATACAAGTTAGATCAAAATAAAATAATACTAATTTATTAATATTTAGAAA
* * * * *
39528 ATTAATCAATAAGAGATTTAAAAAGTGAATCTGTTTTACTAAACCAATTTTTAAATAGTTTTGAC
131 ATT-ATCAATAAGAGATTTAAAAAATAAATCTGTTTTACCAAACCAATGTTTAAATAGTTATGAC
* * * * *
39593 TATTTAAATAATTATCTATTTCAAAATCATTATAACCTTTTATTTTGTCATCAAACAATTGGTTT
195 TATTTAAACAATTATCAATCTCAAAATCATTATAACCTTTTATTTTGTCATAAAACAATTAGTTT
* * * *
39658 GTTCATACTATTTTATTTGAATAAAATAATAATAATTTAATAATATTCAAAAATTTAATAACCAA
260 GATCATACAATGTTATTAGAATAAAATAATAATAATTTAATAATATTCAAAAATTTAATAACCAA
* * * * *
39723 GAAAATTAAAAAATAAATCTAATTACTGAATCAGTTCAAATAATTAAGACAACATGAACGATTTT
325 GAAAATTAAAAAATAAATCT-ATTACTAAACCAATTCAAATAATTAAGACAACATGAACAATTAT
* *
39788 CTATTTCAAATCATTATGACCTTTTCTTTTGTCATAAAAGAATTTTTTTGTTTGTACAAGCTTAT
389 CTATTTCAAATCATTATGACCTTTTCTTTAGTCATAAAAGAATTTTTTTATTTGTACAAGCTTAT
* * * ** * * *
39853 TCTGATTAAAATAATACCAATTTAATAATATTTTAAAAATTAATAAGTAAGAGATTTAAAAAATA
454 TCAGAATAAAATAATACCAATTTAATAACATTCAAAAAATTAACAAGCAAAAGATTTAAAAAATA
* * *
39918 AATTTGTTTACCTAATCAGTTCAAATAGTTAAGACTATTAGAATAATTATCTATATGAAATCATT
519 AATATGTTTACCTAAGCAGTTCAAATAGTTAAGACTATTAGAACAATTATCTAT-TGAAATCATT
* * * * * * * * *
39983 TTGACC-TTTGTTTAGTCATAAAACAATTGTTTTAGTTCGTACAAGCTTATTCAGAATAAATTAT
583 ATGACCTTTTGTTTAGACATAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAAAATAAAATAA
*
40047 TTCTAATTTATTAACATTTAAAAAAATAAATGTATTTACTGAATAAGTT
648 TACTAATTTATTAACATTTAAAAAAATAAATGTATTTACTGAATAAGTT
* * *
40096 CAAATAATTATTATTATTTGAACAATTCTCTATTTAAAATCATTGTAACATTTTGATTTGTCATA
1 CAAATAATTATAACTATTT-AACAATTC-CTATTTAAAATCATTATAACATTTTG-TTTGTCATA
**
40161 AAACAATTGTTTTAGTTAATACAAGCTTAGAT-GGAATAAAATAATACTAATTTATTAATATTTC
63 AAACAATTGTTTTAGTTAATACAAG-TTAGATCAAAATAAAATAATACTAATTTATTAATATTT-
*
40225 A-AAAA-T-T-AATAAGAGATTTAAAAAATAAATCTG-TTTACCAAA-CTA-GTTTAAATAGTTA
126 AGAAAATTATCAATAAGAGATTTAAAAAATAAATCTGTTTTACCAAACCAATGTTTAAATAGTTA
* * * *
40283 TGACTATTTGAACAATTATCAATCTC-AAATCATTA-ATATC-TTTGTTTTGTCATAAAATAATT
191 TGACTATTTAAACAATTATCAATCTCAAAATCATTATA-ACCTTTTATTTTGTCATAAAACAATT
* * *
40345 ATTTATGATCATAGAATGTTATTCAG-TTGAAAATAATACA-AATTTAATAATATTCCAAAAA-T
255 AGTT-TGATCATACAATGTTATT-AGAAT-AAAATAATA-ATAATTTAATAATATT-CAAAAATT
** * * * ** *
40407 TAATAAGTAA-AGATTTAAAATATAAATGCGT-TTGTTAAACCAATTCAAATAGTTAA-A-AACT
315 TAATAACCAAGAAAATTAAAAAATAAAT-C-TATTACTAAACCAATTCAAATAATTAAGACAAC-
** * *
40468 ATTAGAGTA-AATTATCTATTTCAAATTGTTCTGACCTTTT-TTGTAGTCATAAAA-TATTTGTT
377 A-T-GA--ACAATTATCTATTTCAAATCATTATGACCTTTTCTT-TAGTCATAAAAGAATTT-TT
* *
40530 TTCATATCT-TATAAGCTTATTCAGAATAAAATAAT-CCAATTTTATTAACATTCAAAAAATTAA
436 TT-AT-T-TGTACAAGCTTATTCAGAATAAAATAATACCAA-TTTAATAACATTCAAAAAATTAA
* * * *
40593 CAAGCAAAAGATTTGGAAAAA-GAATATGTTTA-CTAAGCAAGTTCAAATAGTTATGACTATTTG
497 CAAGCAAAAGATTT-AAAAAATAAATATGTTTACCTAAGC-AGTTCAAATAGTTAAGACTATTAG
* * * *
40656 AACAATTATTTATTTAAATCATTATGACCTTTTGTTTTGACATAAAACAATTGTTTCAGTTTATA
560 AACAATTATCTATTGAAATCATTATGACCTTTTGTTTAGACATAAAACAATTGTTTCAGTTCATA
* * *
40721 AAAGGTTATCCAAAATAAAATAATACTAATTTCTTAACATTTCAAAAAAT
625 AAAGCTTATCCAAAATAAAATAATACTAATTTATTAACATTTAAAAAAAT
40771 TAATAAGGGT
Statistics
Matches: 558, Mismatches: 90, Indels: 55
0.79 0.13 0.08
Matches are distributed among these distances:
691 3 0.01
692 24 0.04
693 60 0.11
694 75 0.13
695 50 0.09
696 33 0.06
697 191 0.34
698 24 0.04
699 8 0.01
700 22 0.04
701 63 0.11
702 5 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (696 bp):
CAAATAATTATAACTATTTAACAATTCCTATTTAAAATCATTATAACATTTTGTTTGTCATAAAA
CAATTGTTTTAGTTAATACAAGTTAGATCAAAATAAAATAATACTAATTTATTAATATTTAGAAA
ATTATCAATAAGAGATTTAAAAAATAAATCTGTTTTACCAAACCAATGTTTAAATAGTTATGACT
ATTTAAACAATTATCAATCTCAAAATCATTATAACCTTTTATTTTGTCATAAAACAATTAGTTTG
ATCATACAATGTTATTAGAATAAAATAATAATAATTTAATAATATTCAAAAATTTAATAACCAAG
AAAATTAAAAAATAAATCTATTACTAAACCAATTCAAATAATTAAGACAACATGAACAATTATCT
ATTTCAAATCATTATGACCTTTTCTTTAGTCATAAAAGAATTTTTTTATTTGTACAAGCTTATTC
AGAATAAAATAATACCAATTTAATAACATTCAAAAAATTAACAAGCAAAAGATTTAAAAAATAAA
TATGTTTACCTAAGCAGTTCAAATAGTTAAGACTATTAGAACAATTATCTATTGAAATCATTATG
ACCTTTTGTTTAGACATAAAACAATTGTTTCAGTTCATAAAAGCTTATCCAAAATAAAATAATAC
TAATTTATTAACATTTAAAAAAATAAATGTATTTACTGAATAAGTT
Found at i:40869 original size:176 final size:176
Alignment explanation
Indices: 40634--40953 Score: 403
Period size: 176 Copynumber: 1.8 Consensus size: 176
40624 ACTAAGCAAG
** * * * * *
40634 TTCAAATAGTTATGACTATTTGAACAATTATTTATTTAAATCATTATGACCTTTTGTTTTGACAT
1 TTCAAATAGTTACAACTATTTGAACAAATATCTATTAAAATCATTATGACCTGTTGTTTTGACAC
* * * *
40699 AAAACAATTGTTTCAGTTTATAAAAGG-TTATCCAAAAT-AAAATAATACTAATTTCTTAACATT
66 AAAACAATTGTTTAAGTTCAT-AAAGGCTTATCCAAAATAAAAATAATACCAATTTATTAACA-T
40762 TCAAAAAATTAATAAGGGTAAAAAAAGATAAAATTTTTACCGAACAAA
129 TCAAAAAATTAATAAGGGTAAAAAAAGATAAAATTTTTACCGAACAAA
* * * **
40810 TTCAAATAGTTACAATTATTTGAACAAATGTCTATTGAAAATCGTT-TGACCTGTTGTTTTGTTA
1 TTCAAATAGTTACAACTATTTGAACAAATATCTATT-AAAATCATTATGACCTGTTGTTTTGACA
* * * * *
40874 CAAAACAATTGTTTAAGTTCATATAGGCTTATTCAAAGTAAAAATGATACCAATTTATTAATATT
65 CAAAACAATTGTTTAAGTTCATAAAGGCTTATCCAAAATAAAAATAATACCAATTTATTAACATT
40939 CAAAAAATTAATAAG
130 CAAAAAATTAATAAG
40954 TGATTTAAAA
Statistics
Matches: 120, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
175 4 0.03
176 90 0.75
177 26 0.22
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (176 bp):
TTCAAATAGTTACAACTATTTGAACAAATATCTATTAAAATCATTATGACCTGTTGTTTTGACAC
AAAACAATTGTTTAAGTTCATAAAGGCTTATCCAAAATAAAAATAATACCAATTTATTAACATTC
AAAAAATTAATAAGGGTAAAAAAAGATAAAATTTTTACCGAACAAA
Done.