genome.fa.s184.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168009.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_264, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41062

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417--455	14	2.9	13	85	7	51	30	2	0	66	1.05
3699--3760	10	6.5	10	82	12	69	54	3	0	41	1.16
3737--3779	14	3.2	13	81	12	59	51	0	0	48	1.00
3664--3775	19	5.9	19	69	14	72	53	1	1	42	1.21
4050--4079	15	2.0	15	100	0	60	53	0	0	46	1.00
4430--4877	182	2.5	180	82	3	492	41	10	7	40	1.67
4338--4949	179	3.4	180	79	6	521	42	9	7	40	1.67
5185--5216	15	2.1	15	94	0	55	43	0	0	56	0.99
5223--5251	14	2.0	15	93	6	51	68	3	0	27	1.05
5665--5724	20	3.5	16	79	16	59	46	1	1	50	1.21
5726--5764	17	2.2	18	86	13	55	48	0	2	48	1.15
5755--5808	24	2.3	23	81	15	58	50	0	1	48	1.11
5928--5974	15	3.2	15	82	14	62	46	0	0	53	1.00
5986--6029	15	2.8	16	86	10	56	47	0	4	47	1.22
6172--6290	57	2.1	54	79	10	123	52	0	2	43	1.20
7776--7825	21	2.4	21	79	0	55	48	2	0	50	1.12
7761--7807	24	1.9	25	87	12	71	48	4	2	44	1.34
8436--8460	12	2.1	12	100	0	50	52	0	0	48	1.00
9142--9189	20	2.3	22	86	10	66	52	2	2	43	1.24
11225--11263	15	2.8	13	82	14	51	48	0	5	46	1.24
11377--11412	19	1.9	18	88	5	54	52	0	8	38	1.32
11653--11694	14	3.1	14	76	16	52	47	0	7	45	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12277--12370	30	3.0	31	77	14	86	46	2	2	48	1.25
12321--12365	19	2.4	18	82	13	56	51	2	0	46	1.13
12498--12532	16	2.2	16	89	0	52	42	0	2	54	1.15
14059--15029	182	5.4	180	75	8	550	40	8	10	41	1.68
15668--16130	176	2.6	177	77	7	413	39	9	10	40	1.72
16315--16613	155	1.9	155	84	2	404	41	7	11	39	1.70
16448--18350	181	10.7	180	77	7	1533	41	8	9	40	1.68
15812--18209	358	6.9	335	73	11	1046	41	8	9	39	1.69
16457--18350	358	5.3	353	75	10	1495	41	8	9	40	1.68
16457--18350	539	3.6	536	77	8	1444	41	8	9	40	1.68
17861--18338	178	2.7	179	81	5	565	42	7	8	41	1.63
18464--18523	20	3.0	20	77	15	63	51	1	0	46	1.10
19204--19253	18	2.7	19	76	14	59	48	0	0	52	1.00
19507--19546	15	2.7	15	88	3	55	55	2	0	42	1.13
19571--19640	29	2.6	27	78	12	72	52	2	0	44	1.15
19599--19661	20	3.0	20	75	20	58	55	1	0	42	1.09
19599--19666	22	3.2	21	78	12	59	55	1	0	42	1.08
19650--19706	26	2.1	29	81	15	68	45	1	1	50	1.22
20304--20334	15	2.1	14	94	5	53	38	0	0	61	0.96
20774--20814	14	3.0	14	85	3	57	31	4	0	63	1.15
25060--25109	25	2.0	25	84	7	66	52	0	0	48	1.00
25918--25958	20	2.0	20	86	9	57	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26099--26164	33	2.0	32	82	11	80	46	3	1	48	1.26
26271--26328	21	2.6	23	84	13	77	48	0	0	51	1.00
26285--26331	12	4.3	11	84	15	62	46	0	0	53	1.00
27045--27108	33	2.0	32	81	9	76	46	4	1	46	1.33
27054--27116	32	1.9	33	83	3	83	46	3	1	49	1.27
27137--27190	15	3.7	15	76	13	60	44	0	0	55	0.99
27212--27303	17	5.2	17	70	21	55	45	3	2	48	1.30
27357--27396	15	2.5	16	88	8	55	47	2	0	50	1.14
27389--27463	17	4.3	17	72	14	55	53	0	0	46	1.00
27631--27727	13	7.1	14	67	20	55	49	1	1	48	1.14
27569--27727	22	7.0	23	67	22	72	48	1	1	48	1.20
27636--27707	16	4.9	15	79	17	64	51	1	0	47	1.09
28216--28257	17	2.6	16	82	17	59	59	4	0	35	1.19
28212--28256	21	2.1	22	87	4	65	55	4	0	40	1.20
28240--28269	12	2.5	12	94	0	51	56	6	3	33	1.42
28327--28981	182	3.7	180	80	6	656	40	7	10	41	1.68
28327--28994	178	3.8	173	77	9	589	40	7	10	41	1.68
29568--29598	13	2.4	13	94	0	53	41	0	0	58	0.98
29865--29904	19	2.1	19	85	0	53	42	0	7	50	1.30
30324--30374	18	2.8	19	83	16	56	43	0	5	50	1.26
30421--30475	26	2.2	25	83	6	67	49	1	0	49	1.11
30507--30570	20	3.3	19	76	20	60	51	4	0	43	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30806--30861	22	2.6	21	75	16	60	39	1	0	58	1.08
30839--30934	33	2.9	32	70	14	79	44	1	1	53	1.14
31073--31151	16	5.3	15	70	22	60	46	2	0	50	1.14
31076--31152	12	6.6	11	73	19	59	45	2	0	51	1.14
31077--31189	41	2.6	46	76	20	118	50	2	0	46	1.15
32173--32236	29	2.2	29	78	10	69	48	1	1	48	1.20
32523--32584	28	2.1	28	82	14	72	43	1	3	51	1.27
32628--32711	18	4.9	18	70	28	51	48	0	1	50	1.08
33481--33523	20	2.2	19	88	12	61	53	0	0	46	1.00
35070--35116	23	2.0	23	83	0	58	51	0	0	48	1.00
35680--35739	20	3.0	20	77	15	63	51	1	0	46	1.10
35691--35747	17	3.3	17	76	16	55	54	0	0	45	0.99
35880--35921	19	2.3	19	80	12	52	54	2	0	42	1.13
36396--36457	25	2.4	24	79	12	70	53	1	0	45	1.10
36479--36512	18	1.9	17	88	5	50	44	0	0	55	0.99
36718--36760	15	2.9	15	89	3	61	53	2	0	44	1.13
36824--36854	16	1.9	16	93	0	53	58	0	0	41	0.98
37506--37538	16	2.1	15	94	5	57	42	0	0	57	0.98
37514--37547	16	2.1	16	88	0	50	44	0	0	55	0.99
37992--38020	15	1.9	15	100	0	58	27	0	0	72	0.85

Tables:   1

The End!