Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167844.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_115, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 80870
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.39
File 1 of 2
Found at i:78 original size:29 final size:30
Alignment explanation
Indices: 1--78 Score: 70
Period size: 29 Copynumber: 2.6 Consensus size: 30
* * *
1 ATTATTAAATATTAAT-AATTTTATTTATA
1 ATTATTAAATATTAATAAAATTGATATATA
* * *
30 ATTATATCAATAATATTAAAATTGATATATA
1 ATTAT-TAAATATTAATAAAATTGATATATA
*
61 GTTATT-AATATTAATAAA
1 ATTATTAAATATTAATAAA
79 TTATTAGTTA
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
29 15 0.39
30 9 0.24
31 14 0.37
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (30 bp):
ATTATTAAATATTAATAAAATTGATATATA
Found at i:136 original size:26 final size:25
Alignment explanation
Indices: 93--172 Score: 78
Period size: 26 Copynumber: 3.3 Consensus size: 25
83 TAGTTAATAC
*
93 TTTAATT-AATATTTAAATATATTAA
1 TTTAATTCAA-ATTGAAATATATTAA
* *
118 TTTTATTCGAAATTGAAATATTTTAA
1 TTTAATTC-AAATTGAAATATATTAA
144 TTTAATTCAAATT--AATA-ATTAA
1 TTTAATTCAAATTGAAATATATTAA
*
166 TATAATT
1 TTTAATT
173 TAATATAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
22 10 0.21
23 4 0.09
25 11 0.23
26 20 0.43
27 2 0.04
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (25 bp):
TTTAATTCAAATTGAAATATATTAA
Found at i:985 original size:361 final size:356
Alignment explanation
Indices: 442--2006 Score: 1191
Period size: 361 Copynumber: 4.4 Consensus size: 356
432 TCATATAAAC
* * * * * *
442 TTATTCAAAATAAAATAATACTAATTTATTAATAATCCAAAATTTTATAA-TAAAAAGATTTAAA
1 TTATTCAGAATAAAATAAT-TTAATTTATTAATATTCTAAAAATTAATAAGT-AAAAGATTTAAA
* * * * * * * * * * * * *
506 AAATGACTTTGTTTTCTAAACAA-TTTAAATAATTAGGACTGTTT-ACATAATTATCTATTTGAA
64 AAATAAATATATTTACTGAACAAGTTCAAATAGTCATGAATATTTGA-ATAATTATCTATTTCAA
* * * * * * ** * *** *
569 ATAACTATAACCTTTTGTTTTGTCATAAAAGATTTTTTTTTTGTTCATCTAAGCTTATTTTGAAT
128 ATCATTATGACCTTTTGTTTTATAATAAAACA-ACTGTTTCAATTCATATAAGCTTATTTTGAAT
*
634 AAAATAATAC-ATATTTATTAATATTAAGACAATTAATAAGTAAAAGATTTAAAAAAATAAATCT
192 AAAATAATACTA-ATTTATTAATATTAAGAAAATTAATAAGTAAAAGATTT-AAAAAATAAATCT
** * * * * *
698 GTTTACCAAACAAG-TTCAATCATTATGGCTATTTAAGCAATTATTTATTTCAACTTGTTATGAC
255 GTTTACTGAACAAGTTTAAAT-ATTATGACTATTGAA-CAATTATTTATTTCAAATCGTTATGA-
* *
762 TTTTTGTTTTGTCATAAAACATTATTTTTGTTCATACAAGT
317 TTTTTATTTTGTCATAAAACATTA-TTCTGTTCATACAAGT
* * * * *
803 TTATTCAGATTAAAATAATATTAATTTATAAATATTTTGACAATTAATAAGTAAAAGATTTAAAA
1 TTATTCAGAATAAAATAAT-TTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAA
*
868 AATAAATATATTTACTAAACAAGTTCAAATAGTCATGAATATTTGAATAATTATCTATTTCAAAT
65 AATAAATATATTTACTGAACAAGTTCAAATAGTCATGAATATTTGAATAATTATCTATTTCAAAT
*
933 CATTATGACCTTTTCTTTTATAATAAAAC-ACTTGTTTCAATTCATATAAGCTTA-TTTGAAGTA
130 CATTATGACCTTTTGTTTTATAATAAAACAAC-TGTTTCAATTCATATAAGCTTATTTTGAA-TA
* * ** * * * * * *
996 AGATAATACTAATTCATTAATATTCTGAAAATTAATGAGTAAGAGAATTAAAAAA-GAATATATT
193 AAATAATACTAATTTATTAATATTAAGAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTT
* * *
1060 TACTGAATAAGTTTAAATAATTATGACTATCTGAACAATTATTTATTTCAAAACATTATGATTTT
258 TACTGAACAAGTTTAAAT-ATTATGACTAT-TGAACAATTATTTATTTCAAATCGTTATGA-TTT
* *
1125 TTATTTTGTCATTAAATA-ATTGATTCTGTTCATGCAAGC
320 TTATTTTGTCA-TAAA-ACATT-ATTCTGTTCATACAAGT
* * * *
1164 TTATTTCA-ACTAAAGTAATTTAAATTTATTAATATTCCAAAAATTAATAAGTAAAA-CTTTAAA
1 TTA-TTCAGAATAAAATAATTT-AATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAA
* * *
1227 AAATAAATATATTTTCTGAACAATTTCAAATAGTTAT-AACTATTTGAATAATTATCTATTTCAA
64 AAATAAATATATTTACTGAACAAGTTCAAATAGTCATGAA-TATTTGAATAATTATCTATTTCAA
* * * * * *
1291 ATTATTATGACCTTTTGTTTTGTCATAAACCAACTGTTTCTATTCATAAAAGCTT-TTTTGAAAT
128 ATCATTATGACCTTTTGTTTTATAATAAAACAACTGTTTCAATTCATATAAGCTTATTTTG-AAT
* * *
1355 AAAATAATATTAATTTATTAAAATTCAA-AAAATTAATAAGTAAAATATTTAAAAAATAAATCTG
192 AAAATAATACTAATTTATTAATATT-AAGAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTG
* * *
1419 TTTATTGAGCAAGTTTAAATAGTTATGACTATTGGAATAATTATTTATTTCAAATCGTTATGATC
256 TTTACTGAACAAGTTTAAATA-TTATGACTATT-GAACAATTATTTATTTCAAATCGTTATGAT-
*
1484 TTTTATTTTGTCATAAAACAATTAATTCTATTCATACAA-T
318 TTTTATTTTGTCATAAAAC-ATT-ATTCTGTTCATACAAGT
* ** * ***
1524 TTTTTTTGAAATAAAATAATTTTAATTTATTAGTATTCTAAAAATTAATAAGTTTGAGATTTAAA
1 TTATTCAG-AATAAAATAA-TTTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAA
* * * * * **
1589 AAATAAATTTGTTTACCGAACATGTTTAAATAGTCATGTTTATTTGAACT-ATTATCTATTTCAA
64 AAATAAATATATTTACTGAACAAGTTCAAATAGTCATGAATATTTGAA-TAATTATCTATTTCAA
* * * * ** * * * * ***
1653 ACCATAATGACATTTTGTTTTGTTGTAAAACGATTATTTCTATTCATGTATAA--TTATTCAAAA
128 ATCATTATGACCTTTTGTTTTATAATAAAACAACTGTTTCAATTCA--TATAAGCTTATTTTGAA
* * * ** * * *
1716 TATAATAATACTGATCTATTAATATTTTGATAATTAATAAG----AGATTT-GAAAATAAAATAT
191 TAAAATAATACTAATTTATTAATATTAAGAAAATTAATAAGTAAAAGATTTAAAAAAT-AAATCT
* * * * * * * *
1776 ATTTACTGAA-ATAGTTCAAATATTTATAACTATTTAAATAATTATCTATCTCAAATCTTTATGA
255 GTTTACTGAACA-AGTTTAAATA-TTATGACTA-TTGAACAATTATTTATTTCAAATCGTTATGA
* * ** *
1840 TATTTATTTTGTCATAAAACAAGTGT-TTCTTTTCATACTGGC
317 TTTTTATTTTGTCATAAAAC-A-T-TATTCTGTTCATACAAGT
* * * * *
1882 TTATTCA-ATTCAAATAATACTAATTTAATAATATT-TCAAAAA-T--T-AGTAAGAGATTTAAA
1 TTATTCAGAATAAAATAAT-TTAATTTATTAATATTCT-AAAAATTAATAAGTAAAAGATTT-AA
* * * * * *
1941 AAAATAAATGTGTTT-GTCGAATC-AGTTCAAATAGTTA-GACTATTAGAATAATTATCTATTTC
63 AAAATAAATATATTTACT-GAA-CAAGTTCAAATAGTCATGAATATTTGAATAATTATCTATTTC
2003 AAAT
126 AAAT
2007 AATAAGTATT
Statistics
Matches: 971, Mismatches: 187, Indels: 101
0.77 0.15 0.08
Matches are distributed among these distances:
351 1 0.00
352 33 0.03
353 31 0.03
354 1 0.00
355 3 0.00
356 26 0.03
357 37 0.04
358 65 0.07
359 22 0.02
360 231 0.24
361 318 0.33
362 195 0.20
363 4 0.00
364 4 0.00
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (356 bp):
TTATTCAGAATAAAATAATTTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAA
ATAAATATATTTACTGAACAAGTTCAAATAGTCATGAATATTTGAATAATTATCTATTTCAAATC
ATTATGACCTTTTGTTTTATAATAAAACAACTGTTTCAATTCATATAAGCTTATTTTGAATAAAA
TAATACTAATTTATTAATATTAAGAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTAC
TGAACAAGTTTAAATATTATGACTATTGAACAATTATTTATTTCAAATCGTTATGATTTTTATTT
TGTCATAAAACATTATTCTGTTCATACAAGT
Found at i:1473 original size:181 final size:180
Alignment explanation
Indices: 283--2006 Score: 1194
Period size: 181 Copynumber: 9.6 Consensus size: 180
273 ATTATGTCAA
* * * * * * *
283 AATACTAATTTGTTAATATTTTGACAATTAATAAGTAAAAAATTTTAAAAAATAAATATATTTAC
1 AATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGA-TTTAAAAAATAAATATGTTTAC
* * * * * * * *
348 -CACACTAGATCAAATAATCAAGACAATTTGAATAATTATCTATTT----T-A--ATGACCTTTT
65 TGA-ACAAGTTTAAATAGTTATGACTA-TTGAATAATTATCTATTTCAAATCATTATGACCTTTT
* * * * * * **
405 GCTTTGTCATAAAAGAATTGTTTCAATTCATATAAACTTATTCAAAATAAAAT
128 GTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTTTTTGAAATAAAAT
* * * * * * * * *
458 AATACTAATTTATTAATAATCCAAAATTTTATAA-TAAAAAGATTTAAAAAATGACTTTGTTTTC
1 AATATTAATTTATTAATATTCTAAAAATTAATAAGT-AAAAGATTTAAAAAATAAATATGTTTAC
* * * * * * * * *
522 TAAACAA-TTTAAATAATTAGGACTGTTTACATAATTATCTATTTGAAATAACTATAACCTTTTG
65 TGAACAAGTTTAAATAGTTATGACTATTGA-ATAATTATCTATTTCAAATCATTATGACCTTTTG
* * * * *
586 TTTTGTCATAAAAGATTTTTTTTTTGTTCAT-CTAAGCTTATTTTG-AATAAAAT
129 TTTTGTCATAAAACA-ATTGTTTCTATTCATAC-AAGCTT-TTTTGAAATAAAAT
* *
639 AATA-CATATTTATTAATA-T-TAAGACAATTAATAAGTAAAAGATTTAAAAAAATAAATCTGTT
1 AATATTA-ATTTATTAATATTCTAA-A-AATTAATAAGTAAAAGATTT-AAAAAATAAATATGTT
** * * * * * * ** *
701 TACCAAACAAG-TTCAATCA-TTATGGCTATTTAAGCAATTATTTATTTCAACTTGTTATGACTT
62 TACTGAACAAGTTTAAAT-AGTTATGACTATTGAA-TAATTATCTATTTCAAATCATTATGACCT
* * * * * *
764 TTTGTTTTGTCATAAAAC-ATTATTTTTGTTCATACAAG-TTTATTCAGATTAAAAT
125 TTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTTTTTGA-AATAAAAT
* * * * *
819 AATATTAATTTATAAATATTTTGACAATTAATAAGTAAAAGATTTAAAAAATAAATATATTTACT
1 AATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACT
* * * * *
884 AAACAAGTTCAAATAGTCATGAATATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTCT
66 GAACAAGTTTAAATAGTTATGACTA-TTGAATAATTATCTATTTCAAATCATTATGACCTTTTGT
* * * * * * * *
949 TTTATAATAAAACACTTGTTTCAATTCATATAAGCTTATTTGAAGTAAGAT
130 TTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTTTTTGAAATAAAAT
* * * * * * * *
1000 AATACTAATTCATTAATATTCTGAAAATTAATGAGTAAGAGAATTAAAAAA-GAATATATTTACT
1 AATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACT
* * * * * ** *
1064 GAATAAGTTTAAATAATTATGACTATCTGAACAATTATTTATTTCAAAACATTATGATTTTTTAT
66 GAACAAGTTTAAATAGTTATGACTAT-TGAATAATTATCTATTTCAAATCATTATGACCTTTTGT
* * * * * * * * *
1129 TTTGTCATTAAATAATTGATTCTGTTCATGCAAGCTTATTTCAACTAAAGT
130 TTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTTTTTGAAATAAAAT
* * * *
1180 AAT-TTAAATTTATTAATATTCCAAAAATTAATAAGTAAAA-CTTTAAAAAATAAATATATTTTC
1 AATATT-AATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTAC
* *
1243 TGAACAA-TTTCAAATAGTTATAACTATTTGAATAATTATCTATTTCAAATTATTATGACCTTTT
65 TGAACAAGTTT-AAATAGTTATGACTA-TTGAATAATTATCTATTTCAAATCATTATGACCTTTT
* * *
1307 GTTTTGTCATAAACCAACTGTTTCTATTCATAAAAGCTTTTTTGAAATAAAAT
128 GTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTTTTTGAAATAAAAT
* * * * *
1360 AATATTAATTTATTAAAATTCAAAAAATTAATAAGTAAAATATTTAAAAAATAAATCTGTTTATT
1 AATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACT
* * * * *
1425 GAGCAAGTTTAAATAGTTATGACTATTGGAATAATTATTTATTTCAAATCGTTATGATCTTTTAT
66 GAACAAGTTTAAATAGTTATGACTATT-GAATAATTATCTATTTCAAATCATTATGACCTTTTGT
** **
1490 TTTGTCATAAAACAATTAATTCTATTCATACAATTTTTTTTGAAATAAAAT
130 TTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTTTTTGAAATAAAAT
* * *** * *
1541 AATTTTAATTTATTAGTATTCTAAAAATTAATAAGTTTGAGATTTAAAAAATAAATTTGTTTACC
1 AATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACT
* * ** * * *
1606 GAACATGTTTAAATAGTCATGTTTATTTGAACT-ATTATCTATTTCAAACCATAATGACATTTTG
66 GAACAAGTTTAAATAGTTATGACTA-TTGAA-TAATTATCTATTTCAAATCATTATGACCTTTTG
** * * * * ** *
1670 TTTTGTTGTAAAACGATTATTTCTATTCATGTATAA--TTATTCAAAATATAAT
129 TTTTGTCATAAAACAATTGTTTCTATTCA--TACAAGCTTTTTTGAAATAAAAT
* * * * * * * *
1722 AATACTGATCTATTAATATTTTGATAATTAATAAG----AGATTT-GAAAATAAAATATATTTAC
1 AATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAAT-AAATATGTTTAC
* * * * * *
1782 TGAA-ATAGTTCAAATATTTATAACTATTTAAATAATTATCTATCTCAAATCTTTATGA--TATT
65 TGAACA-AGTTTAAATAGTTATGACTA-TTGAATAATTATCTATTTCAAATCATTATGACCT-TT
* * * ** * * * *
1844 TATTTTGTCATAAAACAAGTGTTTCTTTTCATACTGGC-TTATTCAATTCAAAT
127 TGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTTTTTGAAATAAAAT
* * * *
1897 AATACTAATTTAATAATATT-TCAAAAA-T--T-AGTAAGAGATTTAAAAAAATAAATGTGTTT-
1 AATATTAATTTATTAATATTCT-AAAAATTAATAAGTAAAAGATTT-AAAAAATAAATATGTTTA
* *
1956 GTCGAATC-AGTTCAAATAGTTA-GACTATTAGAATAATTATCTATTTCAAAT
64 CT-GAA-CAAGTTTAAATAGTTATGACTATT-GAATAATTATCTATTTCAAAT
2007 AATAAGTATT
Statistics
Matches: 1217, Mismatches: 270, Indels: 124
0.76 0.17 0.08
Matches are distributed among these distances:
171 2 0.00
172 4 0.00
173 26 0.02
174 27 0.02
175 91 0.07
176 57 0.05
177 63 0.05
178 4 0.00
179 42 0.03
180 400 0.33
181 407 0.33
182 89 0.07
183 5 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.42
Consensus pattern (180 bp):
AATATTAATTTATTAATATTCTAAAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACT
GAACAAGTTTAAATAGTTATGACTATTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTT
TTGTCATAAAACAATTGTTTCTATTCATACAAGCTTTTTTGAAATAAAAT
Found at i:3673 original size:12 final size:13
Alignment explanation
Indices: 3629--3678 Score: 50
Period size: 12 Copynumber: 3.8 Consensus size: 13
3619 TTGTCATTTC
3629 TTTATTT-TTTCACT
1 TTTATTTATTT-A-T
* *
3643 TTTATATGTTTAT
1 TTTATTTATTTAT
3656 TTTATTTATTTA-
1 TTTATTTATTTAT
3668 TTTATTTATTT
1 TTTATTTATTT
3679 GTGAATGTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
12 11 0.34
13 11 0.34
14 7 0.22
15 3 0.09
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (13 bp):
TTTATTTATTTAT
Found at i:4523 original size:230 final size:230
Alignment explanation
Indices: 4107--4563 Score: 842
Period size: 230 Copynumber: 2.0 Consensus size: 230
4097 GATATTATGG
* *
4107 GCCGGGTATGTTATGCTTTCTTGTGCAAGAATAAATGCCATGTGTGCATTGAATTGATATTTTTC
1 GCCGGGTATGTTATGCTTTCTTGTGCAAGAATAAATGCCACGTGTGCATTGAATTGATATTTTCC
4172 ATGTCTGTAAGAACTGACCTGCCATTGATGGGTTACTTGACATTAAGCAAAGTTCATAATAATTG
66 ATGTCTGTAAGAACTGACCTGCCATTGATGGGTTACTTGACATTAAGCAAAGTTCATAATAATTG
*
4237 AGCAATACTTTAGTAGGTGCACCTACAAGTGATTTTCTTTGAATGCTTTATGAATCTTCTCTTTC
131 AGCAATACTTTAGTAGGTGCACCTACAAGTGATTTTCTTTGAATGCTTTATGAATCTTCTCCTTC
4302 TATACATTACATAAATAATGCAGTCACAAGATAGA
196 TATACATTACATAAATAATGCAGTCACAAGATAGA
4337 GCCGGGTATGTTATGCTTTCTTGTGCAAGAATAAATGCCACGTGTGCATTGAATTGATATTTTCC
1 GCCGGGTATGTTATGCTTTCTTGTGCAAGAATAAATGCCACGTGTGCATTGAATTGATATTTTCC
**
4402 ATGTCTGTAAGAACTGACCTGCCATTGATGGGTTACTTGACATTAAGTGAAGTTCATAATAATTG
66 ATGTCTGTAAGAACTGACCTGCCATTGATGGGTTACTTGACATTAAGCAAAGTTCATAATAATTG
* * *
4467 GGCAATACTTTAGTAGGTGCACCTACAAGTGATTTTCTTTGATTGCTTTCTGAATCTTCTCCTTC
131 AGCAATACTTTAGTAGGTGCACCTACAAGTGATTTTCTTTGAATGCTTTATGAATCTTCTCCTTC
4532 TATACATTACATAAATAATGCAGTCACAAGAT
196 TATACATTACATAAATAATGCAGTCACAAGAT
4564 GGAGTTGGTG
Statistics
Matches: 219, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
230 219 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.36
Consensus pattern (230 bp):
GCCGGGTATGTTATGCTTTCTTGTGCAAGAATAAATGCCACGTGTGCATTGAATTGATATTTTCC
ATGTCTGTAAGAACTGACCTGCCATTGATGGGTTACTTGACATTAAGCAAAGTTCATAATAATTG
AGCAATACTTTAGTAGGTGCACCTACAAGTGATTTTCTTTGAATGCTTTATGAATCTTCTCCTTC
TATACATTACATAAATAATGCAGTCACAAGATAGA
Found at i:17266 original size:485 final size:487
Alignment explanation
Indices: 16302--17361 Score: 1330
Period size: 485 Copynumber: 2.2 Consensus size: 487
16292 AAATTAGGTG
** * * * *
16302 CCAATAATGATTTCACAAATGGTATTCAAATATTA-ATAGCATCCCACAAATTTTTTA-AAGCAT
1 CCAATAACAATTTCGCAAATGATATCCAAATATTACA-A-CATCCCACAAATTTCTTAGAA-CAT
* * * * *
16365 TCATGAATCCCCTTAAAAAAATGCGTCTAAAGTAGAAAACTGTTAAAAAATTAAAATCGTGTAAA
63 TCATGAATCCCC-TAAAAAAATGCCTCCAAAGCAGAAAACTGATAAAAAATTAAAATCGCGTAAA
* * * ** * *
16430 TGATTTTTATATCACAATTTGAAATCATGTAAATGGTTTTTATGCCCATAATTGCTCAAAAATAA
127 TCATTTTTATATCACAATTTGAAATCATGCAAATGGTTTTCATGCCCATAATCACACAAAAACAA
* * * *
16495 AATTTTGACATTTTGAGCTCTAAAATCCTTCATAACTTACACTTTAACACTGTTAAAATTTAAAA
192 AATTTTGACATTTTAAGCTCCAAAATCCTTCATAACTTACACTTTAACACTGTGAAAAATTAAAA
** * *
16560 TCAATGTAAGTTATCATGTTTTCTATTTGAGCAAATTTAAAACATTGGATTCAAGATATTTAAAC
257 TCAATACAAGTTATCATGTTTCCTATTTGAGCAAATTTAAAACATTGGATTCAAGATATTCAAAC
** * *
16625 TTCATTTTTATTTAAAAACTTACTAAAATAATATTTCATACTTCAAAGCTCAACTCTAGCAGAAA
322 TTCATTTCCATTTAAAAACTTACTAAAACAATATTTCAAACTTCAAAGCTCAACTCTAGCAGAAA
* * * *
16690 TGGTTTTCAAAGCAAAGCATAAAGCTTAAAAAAATATTAAGCTTTTGAGCTTGTGCATAACATAT
387 TGGTTTTCAAAGCAAAGCATAAAGCTTAAAAAAACATTAAGCTTTTCACCTTATGCATAACATAT
* * * * **
16755 AAAAATAAGTTAGCACGCAGTTAATCAGATCAAGTG
452 AAAAACAAGTTAGCACACAATTAATCACATCAAGCA
*
16791 CCAATAACAATTTCGTAAATGATATCCAAATA-T-CAACATCCCACAAATTTCTTAGAACATTCA
1 CCAATAACAATTTCGCAAATGATATCCAAATATTACAACATCCCACAAATTTCTTAGAACATTCA
* ** * * *
16854 GGAATCCCC-ATAAAAAATGCCTCCGGAGCA-AAAACGTGATGAAAAATTAAAATTGCG-CAATC
66 TGAATCCCCTA-AAAAAATGCCTCCAAAGCAGAAAAC-TGATAAAAAATTAAAATCGCGTAAATC
* * *
16916 AGTTTTTATATCACAATTTGAAAATCGTGCAAATGGTTTTCATGCCCGTAATCACACAATAACAA
129 A-TTTTTATATCACAATTTG-AAATCATGCAAATGGTTTTCATGCCCATAATCACACAAAAACAA
* *
16981 AATTTTGACATTTTAAGCTCCAAAATCTTTCATAACTTGCACTTTAACACTGTGAAAAATTAAAA
192 AATTTTGACATTTTAAGCTCCAAAATCCTTCATAACTTACACTTTAACACTGTGAAAAATTAAAA
* **
17046 TCAATACAAGTTATCATGTTTCCTTTTTGAGCATGTTTAAAACATTGGATTCAAGATATTCAAAC
257 TCAATACAAGTTATCATGTTTCCTATTTGAGCAAATTTAAAACATTGGATTCAAGATATTCAAAC
* ***
17111 -TCATTTCCATTTTAAAACTTACTAAAACAATATTTCAAACTTCAAAGCTCGGGTCTAGCAGAAA
322 TTCATTTCCATTTAAAAACTTACTAAAACAATATTTCAAACTTCAAAGCTCAACTCTAGCAGAAA
* * *
17175 TGGTTTTCAAA-CCAA-CATAATGCTTCAAAAAAAACATTAAGCTTTTCACCTTATGCATAATAT
387 TGGTTTTCAAAGCAAAGCATAAAGCTT--AAAAAAACATTAAGCTTTTCACCTTATGCATAACAT
**
17238 ATAAAAACAAGTTAGCACACAATTAATCACATCTGGCA
450 ATAAAAACAAGTTAGCACACAATTAATCACATCAAGCA
* * * *
17276 CCAATAACGATTTCGCAAATGATATCCAAATATTAACAGCATCCCACAAATTCCTTAGAGCATTC
1 CCAATAACAATTTCGCAAATGATATCCAAATATT-ACAACATCCCACAAATTTCTTAGAACATTC
*
17341 ATGAATCCCCTGAAAAAATGC
65 ATGAATCCCCTAAAAAAATGC
17362 TTCTATAGTA
Statistics
Matches: 488, Mismatches: 71, Indels: 25
0.84 0.12 0.04
Matches are distributed among these distances:
483 9 0.02
484 13 0.03
485 207 0.42
486 184 0.38
487 3 0.01
488 46 0.09
489 26 0.05
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (487 bp):
CCAATAACAATTTCGCAAATGATATCCAAATATTACAACATCCCACAAATTTCTTAGAACATTCA
TGAATCCCCTAAAAAAATGCCTCCAAAGCAGAAAACTGATAAAAAATTAAAATCGCGTAAATCAT
TTTTATATCACAATTTGAAATCATGCAAATGGTTTTCATGCCCATAATCACACAAAAACAAAATT
TTGACATTTTAAGCTCCAAAATCCTTCATAACTTACACTTTAACACTGTGAAAAATTAAAATCAA
TACAAGTTATCATGTTTCCTATTTGAGCAAATTTAAAACATTGGATTCAAGATATTCAAACTTCA
TTTCCATTTAAAAACTTACTAAAACAATATTTCAAACTTCAAAGCTCAACTCTAGCAGAAATGGT
TTTCAAAGCAAAGCATAAAGCTTAAAAAAACATTAAGCTTTTCACCTTATGCATAACATATAAAA
ACAAGTTAGCACACAATTAATCACATCAAGCA
Found at i:19278 original size:489 final size:488
Alignment explanation
Indices: 17391--21740 Score: 5770
Period size: 489 Copynumber: 9.0 Consensus size: 488
17381 CCAAAAATTA
* * * *
17391 AAATCGTGCAAATAGCTTTCATGCCCACAATAGCTCAAAAACAAAATTTTGACATTTTGAGCTCC
1 AAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCC
* *
17456 AAAATCCTCC---A--T--ACTTTAACATTCTGAAAAATTAAAACCAATGCAAGTTATCATGTTT
66 AAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTT
* * **
17514 CTCTGTTTAAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTTCATTTAAGCACTT
131 CTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACTT
* * *
17579 G-TGAAAACAATATTTCATAGTTCAAAGCTCAGCTCTAGCAGAATTGGTTTTCAAAGCAAAGCAT
196 GCT-AAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCAT
* * * * *
17643 AACGCTATGAAAAACTTTAAGCTTTTAAGCTTGTTCATAATATATAAAAACAAGTTAGCACACAG
260 AAAGCTACGAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAG
* * *
17708 TTAATCACATCAGGTACCAATAACAATTTCA-AAATGATATCCAAATATAAGCAGCATCCCACAA
325 TTAATCACATCAGGCACCAATAACGATTTCACAAATGATATCCAAATATCAGCAGCATCCCACAA
* * * * *
17772 AATCCTTAGAGCATTCATGAATCCCCCTAAATAATGCGTCTAGAGCATAAACGAAATC-AAAAAT
390 ATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAATGCAA-CAAAAAAT
* * *
17836 TAAAATCACA-CTAATGGATTTTATGTCACAATTTG
454 TAAAATCA-AGCAAATGGTTTTTATATCACAATTTG
*
17871 AAATCGTGCAAATGGTTTTCACT-CCCATAATCGCTCAAAAACAAAATTTTGACATTTTAAGCTC
1 AAATCGTGCAAATGGTTTTCA-TGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTC
* *
17935 TAAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATAATGTT
65 CAAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTT
* * * *
18000 TCTATGTTCGAGCAAGTTTAAAACATTAGATTCAAGATATTCAAGCTCATTTCCATTTAAAAACT
130 TCTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACT
* * * *
18065 TTCTAAAACAATGTTTCATACTTCAAAGCTCGGCTTTAGCAGAAATGGTTTTCAAACCAAAGCAT
195 TGCTAAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCAT
* * *
18130 AAAGCTACGAAAAAC----AG-TTTTGAGCTTCTACATAATATATAAAAATAAGTTAGCACACAG
260 AAAGCTACGAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAG
* * * * *
18190 TTAATCACATCAGGCGCCAATAATGATTTCACAAATGATATCCACATATCAGCAGCATCACACAT
325 TTAATCACATCAGGCACCAATAACGATTTCACAAATGATATCCAAATATCAGCAGCATCCCACAA
* * * ** **
18255 ATTCCTTAGAGCTTTCATGAATCCCCCTAAAAAATGCGCCTAGAGCAGAAACGCAATGAAACGTT
390 ATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAATGCAACAAAAAATT
*** * *
18320 AAAATCGTTCAGATGGTTTTTGTATCACAATTTG
455 AAAATCAAGCAAATGGTTTTTATATCACAATTTG
* * * *
18354 AAATCGTGCAAATGGTTTTCATTCCTATAATCGCTCAAAACCAAAATTTTGACATTTTGGGCTCC
1 AAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCC
* * * * *
18419 AAAATCCTTCGTAACTCGCACTTTAACACTGTGAAAAATTAAAACCAATCCAAGTTATCATATTT
66 AAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTT
*
18484 CTCTGGTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACTT
131 CTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACTT
* *
18549 GCTAAAACAATATTTCATACTTCAAATCTCTGCTCTAGCAGAAAATGGTTTTCAAAGCAAAGCAT
196 GCTAAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAG-AAATGGTTTTCAAAGCAAAGCAT
* * * * * * *
18614 AATGCTTCAAAAAAACATTAAGCTTTTGAGATTGTGCATATTATATAAAAACAAGTTAGTAGACA
260 AAAGCTAC-GAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACA
* ** * *
18679 GTTAATCACATCAGACACCAATAACGATTTCGTAAATAATATCCAAATATCAGCAGCATCACACA
324 GTTAATCACATCAGGCACCAATAACGATTTCACAAATGATATCCAAATATCAGCAGCATCCCACA
* * *
18744 AATTCCTTAGAGCTTTCATGAATCCCCCTAAAAAATGCGTCTAGAGCATAAATGGAACAAAAAAT
389 AATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAATGCAACAAAAAAT
* *
18809 TAAAAACAAGCAAATGATTTTTATATCACAATTTG
454 TAAAATCAAGCAAATGGTTTTTATATCACAATTTG
* *
18844 AAATCGTGCAAATGGTTTTCATGCCCATAATCGGTCAAAAACAAAATTTTGGCATTTTGAGCTCC
1 AAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCC
* * * * *
18909 AAAATCCTCCATAACATGCACTTTAACACTGTTAAAAATTAAAAACTAATTCAAGTTATAATGTT
66 AAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATT-AAAACCAATGCAAGTTATCATGTT
* * *
18974 TCTCTATTTGAGCAAGTTTGAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTTAAAACT
130 TCTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACT
* *
19039 TGCTAAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGATTTTCAAAACAAAGCAT
195 TGCTAAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCAT
* * *
19104 AAAGCTACAAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGTAGACAG
260 AAAGCTACGAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAG
* * *
19169 TTAATCACATCAGGCGCCAATAATGATTTCACAAATGATATCCAAATATCAGCAGCATCTCACAA
325 TTAATCACATCAGGCACCAATAACGATTTCACAAATGATATCCAAATATCAGCAGCATCCCACAA
* * *
19234 ATTCCTTATAGCATTCATGAATCCCCCTAAAAAATGCATCTAGAGCAGAAATGCAACGAAAAATT
390 ATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAATGCAACAAAAAATT
* * *
19299 CAAATCATGCAAACGGTTTTTATATCACAATTTG
455 AAAATCAAGCAAATGGTTTTTATATCACAATTTG
*
19333 AATTCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCC
1 AAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCC
* *
19398 AAAATCCTCCATAACTTACACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATATTT
66 AAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTT
* * * *
19463 CTCTATTTAAGCATGTTTAAAACATTGGATTCAAAATATTCAAACTCATTTCCATTTAAAAACTT
131 CTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACTT
* *
19528 GCTAAAAAAATATTTCAGACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATA
196 GCTAAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATA
* * *
19593 AAGCTACAAAAAAACATTAAGCTTTTGAGCTTGTGCATATTATATACAAACAAGTTAGCACACAG
261 AAGCTAC-GAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAG
* ** * * *
19658 TTAATCACATTAGTTACCAACAACGATTTCGCAAATGATATCCAAATATCAGCAACATCCCACAA
325 TTAATCACATCAGGCACCAATAACGATTTCACAAATGATATCCAAATATCAGCAGCATCCCACAA
* * * * *
19723 ATTCCTTAGAGCATTCATGAATCCCCCTAAAATATCCATCTAGAGCAGAAACGCATCAAAAAATT
390 ATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAATGCAACAAAAAATT
*
19788 AAAATCACA-AAAATGGTTTTTATATCACAATTTG
455 AAAATCA-AGCAAATGGTTTTTATATCACAATTTG
* * * *
19822 AAATCATGCAAATGGTTTTCCA-GCCCATAATCGCTCAAAAACAAAATGTTGACATTTTGGGCAC
1 AAATCGTGCAAATGGTTTT-CATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTC
* * * *
19886 CAAAATCCTCCACAACTTGCACTTTAACACAGTGAAAAATTAAAACCAATACAAGTTATAATGTT
65 CAAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTT
*
19951 TCTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAAGT
130 TCTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACT
* * ** * * *
20016 TGCTAAAACAATATTTCAAATTTCAAAAATCGGTTCTGGCAGAAATGCTTTTCAAAGCAAAGCAT
195 TGCTAAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCAT
* ** *
20081 GAAGCTTTGAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAGCAAGTTAGCACACAG
260 AAAGCTACGAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAG
* * ** * *
20146 TTAATAACATTAGGTGCCAATAATGATTTCACAAATGATATCCAAATATCAGCAGCATGCCC-TA
325 TTAATCACATCAGGCACCAATAACGATTTCACAAATGATATCCAAATATCAGCAGCAT-CCCACA
* ** * **
20210 AATTCCTTAGAGTATTCATGAAT-CCCCTAAAAAATGCACCAAGAGCAGAAACACAACAAAAAAT
389 AATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAATGCAACAAAAAAT
* *
20274 TAAAATCATGCAAACGGTTTTTATATCACAATTTG
454 TAAAATCAAGCAAATGGTTTTTATATCACAATTTG
* * * ***** * * *
20309 AAATCGTGCAAACGGTTTTCATGCCTATAATAGCTC--AAATTTTTTTTTGATATTTTGGGTTCC
1 AAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCC
* *
20372 AAAATCCTCCATAACTTGCAC-TTAACAC--TAAAAAATTAAAACCATTGCAAGTTATCATGTTT
66 AAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTT
* *
20434 CT-TAATTTGAGCAAATTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACT
131 CTCT-GTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACT
*
20498 TGCTAAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCAG
195 TGCTAAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCAT
* * * * * *
20563 AAAGCTACGAAAAATATTAAGGTTTTGAGCATGCGCATAACATATAAAAACAAGTTAGTACACAG
260 AAAGCTACGAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAG
* * * *
20628 TTAATCACATCAAGTACCAATAACGATTTCGCAAATGATATCCAAATATCAGCAGCATCTCACAA
325 TTAATCACATCAGGCACCAATAACGATTTCACAAATGATATCCAAATATCAGCAGCATCCCACAA
* * * * **
20693 AGTCCTTAGAGCATTCATCAATCCCCCTAAAAACTGTGTCTAGAGCAGAAATGCAATGAAAAATT
390 ATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAATGCAACAAAAAATT
* *
20758 CAAATCACA-CAAA-CGTTTTTATATCACAATTTG
455 AAAATCA-AGCAAATGGTTTTTATATCACAATTTG
* * * *
20791 AAATCGTGCAAAT-GTTTTCATTCTCATAATCGCTC---AA-AAATTTTTCCGAAATTTT-AGCT
1 AAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTT--GACATTTTGAGCT
* *
20850 CCAAAATCCTCCATAACTTGCACTTTAACAC--TGACAAATTAAAACCAATGC-AGTTATCTTGT
64 CCAAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGT
* *
20912 TTCTCTGTTTGAACAAGTTTAAAACATTGGATTCAAGATATTAAAACTCATTTCCATTTAAAAAC
129 TTCTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAAC
* * * * * * *
20977 TTGCTAAAACCATATTTCATACTTCAAAACACGGCTCTCGTAGAAATGGCTTTCTAA-C----CA
194 TTGCTAAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCA
* * *
21037 -AAAGCTACGAAAAACATTAAGCTTTTGAGCTTTTGCAAAATATATAAAAACAAGTTAGCAGACA
259 TAAAGCTACGAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACA
* * * * * *
21101 GTTAATTACATCAGACGCCAATAACGATTTCGCAAATGATATCCAAATATTAGTAGCATCCCACA
324 GTTAATCACATCAGGCACCAATAACGATTTCACAAATGATATCCAAATATCAGCAGCATCCCACA
* * ** **
21166 AATTCCTTGGAGCATTCATGAATCCCCCT-AAAAATGCGTTTAGAGCAGAAACCCATGGAAAAAA
389 AATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAATGCA-ACAAAAAA
* ** * * *
21230 ATAAAATCGCGCAAATGGTTTTTATAACTCCATTTG
453 TTAAAATCAAGCAAATGGTTTTTATATCACAATTTG
* * * *
21266 AAATCGTGCAAACGGTTTTCAAGCCCATAATCGCTCAAAACCAAAATTTTGACATTTTGGGCTCC
1 AAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCC
** * *
21331 AAAATCCTCTGTAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATCCAAGTTATCATATTT
66 AAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTT
* **
21396 CTCTGTTTGAGCAACTTTAAAACATTTAAATTCAAGATATTCAAACTCATTTCCATTTAAAAACT
131 CTCTGTTTGAGCAAGTTTAAAACA-TTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACT
* *
21461 TGCTAAAACAATATTTCATACTTCAAATCTCGGCTCTAGCAAAAATGGTTTTCAAAGCAAAGCAT
195 TGCTAAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCAT
* * * * * * *
21526 AATGCTTCAAAAAAACATTAAGCTTTTGAGCTTGTGCATATTATATAAAAACAAGTTAGTAGATA
260 AAAGCTAC-GAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACA
* * *
21591 GTTAATCACATCAGGCACCAATAACGATTTCACAAATGATACCCAAATATCAGCAGCATCTCATA
324 GTTAATCACATCAGGCACCAATAACGATTTCACAAATGATATCCAAATATCAGCAGCATCCCACA
* * *
21656 AATTCCTT-GTAGCATTCATGAATCCCCCTAAAAAATGTGTCTAGAGCAGAAATGCAGC-GAAAA
389 AATTCCTTAG-AGCATTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAATGCAACAAAAAA
* **
21719 TTCAAATCGTGCAAATGGTTTT
453 TTAAAATCAAGCAAATGGTTTT
21741 CTTGCCTATA
Statistics
Matches: 3391, Mismatches: 422, Indels: 105
0.87 0.11 0.03
Matches are distributed among these distances:
473 21 0.01
474 153 0.05
475 30 0.01
476 19 0.01
478 7 0.00
479 39 0.01
480 220 0.06
481 72 0.02
482 405 0.12
483 454 0.13
484 36 0.01
485 45 0.01
486 2 0.00
487 263 0.08
488 279 0.08
489 769 0.23
490 434 0.13
491 143 0.04
ACGTcount: A:0.39, C:0.19, G:0.12, T:0.30
Consensus pattern (488 bp):
AAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCC
AAAATCCTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTT
CTCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACTT
GCTAAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATA
AAGCTACGAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAGT
TAATCACATCAGGCACCAATAACGATTTCACAAATGATATCCAAATATCAGCAGCATCCCACAAA
TTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAATGCAACAAAAAATTA
AAATCAAGCAAATGGTTTTTATATCACAATTTG
Found at i:23521 original size:647 final size:646
Alignment explanation
Indices: 22211--23501 Score: 2003
Period size: 647 Copynumber: 2.0 Consensus size: 646
22201 TGAAGAGCAT
* ***
22211 AATCGCTAAAAAAAGAAAATTTTGACATTTTTGGCTCCAAAATCCTCCATAAATTGCACTTTAAC
1 AATCGCT--AAAAACAAAATTTTGACATTTTAAACTCCAAAATCCTCCATAAATTGCACTTTAAC
*
22276 ACTGTGAAAAATAAAGACCAATACAAGTTATCATGTTTCTATGTTTGAGCAAGTTTAAAACATTG
64 ACTGTGAAAAATAAAGACCAATACAAGTTATCATGTTTCTATGTTTGAGCAAGTTTAAAACATAG
*
22341 GATTCAAGATATTCAAACTCATTTCCATTTAAAAACTAGCTAAAACAATATTTTATACTCAAAGC
129 GATTCAAGATATTCAAACTCATTTCCATTTAAAAACTAGCTAAAACAATATTTCATACTCAAAGC
* * *
22406 TCGGCTTTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCCACAAAAAACATTAAGCTTTTGGG
194 TCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCAAAAAGCCACAAAAAACATTAAGCTTTTGAG
* ** *
22471 CTTGTGCATAATATATAAAAATTAGTTAGCACAAAGTTAATCACGTCAGGCACAAATAACGATTT
259 CTTGTGCAAAATATATAAAAACAAGTTAGCACAAAGTTAATCACATCAGGCACAAATAACGATTT
* * * *
22536 CGTAAATGATATCCAATTATCAGCAGCATCCCAGAAATTCCTTAGAGCATTCATTAATCCCCCCT
324 CGCAAATGATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAATCCCCCCT
* *
22601 AAAAAATGCAACTAGAGCAGAAATGCAACAAAAAATTAAATTTGTGCAAACGGTTTTTATATCAC
389 AAAAAATGCAACTAGAGCAGAAATGCAACAAAAAATTAAATTTATGCAAACGATTTTTATATCAC
22666 AATTTGAAATCGTGCAAACGGTTTTCATGCCTATAATCGCTCAAATTTTTTTTTTTGATATTTTG
454 AATTTGAAATCGTGCAAACGGTTTTCATGCCTATAATCGCTCAAATTTTTTTTTTTGATATTTTG
22731 GGTTCCAAAATCCTCCATAACTTGCACTTAACACTAAAAAATTAAAACCATTGCAAGTTATCATG
519 GGTTCCAAAATCCTCCATAACTTGCACTTAACACTAAAAAATTAAAACCATTGCAAGTTATCATG
* ** * * * *
22796 TTTCTCAATTTGAGTAAATTTAAAACGTTGGATTCAAGATATTAAAATGTTTTTCGTGCCCAT
584 TTTCTCAATTTGAGCAAATTTAAAACGTTGGATTCAAGATATTAAAATCATTTCCATGCCAAA
*
22859 AATCGCTCAAAAACAAAATTTTGACATTTTAAACTCCAAAATCCTCCATAACTTGCACTTTAACA
1 AATCGCT-AAAAACAAAATTTTGACATTTTAAACTCCAAAATCCTCCATAAATTGCACTTTAACA
* * * *
22924 TTGTGAAAAATTAAA-ACCAATGCAAGTTATCATGTTTCTCTGTTTGGGCAAGTTTAAAACATAG
65 CTGTGAAAAA-TAAAGACCAATACAAGTTATCATGTTTCTATGTTTGAGCAAGTTTAAAACATAG
* *
22988 GATTCAAGATATTCAAATTCATTTCCATTTAAAAACTTGCTAAAACAATATTTCATACTTCAAAG
129 GATTCAAGATATTCAAACTCATTTCCATTTAAAAACTAGCTAAAACAATATTTCATAC-TCAAAG
* * * ** * *
23053 GTTGGCTCTAGCAGAAATGGTTTTCAAAG-AATGCAAAAAGTTACGAAAGACATTAAGCTTTTGA
193 CTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCAAAAAGCCACAAAAAACATTAAGCTTTTGA
* * *** **
23117 GTTTGTGCAAAATATATAAAAACAAGTTAGCACACAGTTAATCACATCAGGCACCTCTAATTATT
258 GCTTGTGCAAAATATATAAAAACAAGTTAGCACAAAGTTAATCACATCAGGCACAAATAACGATT
* *
23182 TGGCAAATGATGTCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAAT-CCCCC
323 TCGCAAATGATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAATCCCCCC
* **
23246 TAAAAAATGCATCTAGAGCAGAAATGCAATGAAAAATTAAATTTATGCAAACGATTTTTATATCA
388 TAAAAAATGCAACTAGAGCAGAAATGCAACAAAAAATTAAATTTATGCAAACGATTTTTATATCA
*
23311 CAATTTGAAATCGTGCAAATGGTTTTCATGCCTATAATCGCTCAAAATTTTTTTTTGTTGATATT
453 CAATTTGAAATCGTGCAAACGGTTTTCATGCCTATAATCGCTC-AAATTTTTTTTT-TTGATATT
23376 TTGGGTTCCAAAATCCTCCATAACTTGCACTTAACACTAAAAAATTAAAACCATTGCAAGTTATC
516 TTGGGTTCCAAAATCCTCCATAACTTGCACTTAACACTAAAAAATTAAAACCATTGCAAGTTATC
*
23441 ATGTTTCTCAATTTGAGCAAATTTAAAACGTTGGATTCAAGATATTCAAACTCATTTCCAT
581 ATGTTTCTCAATTTGAGCAAATTTAAAACGTTGGATTCAAGATATT-AAAATCATTTCCAT
23502 TTAAAAACTT
Statistics
Matches: 585, Mismatches: 53, Indels: 9
0.90 0.08 0.01
Matches are distributed among these distances:
646 107 0.18
647 308 0.53
648 161 0.28
649 9 0.02
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (646 bp):
AATCGCTAAAAACAAAATTTTGACATTTTAAACTCCAAAATCCTCCATAAATTGCACTTTAACAC
TGTGAAAAATAAAGACCAATACAAGTTATCATGTTTCTATGTTTGAGCAAGTTTAAAACATAGGA
TTCAAGATATTCAAACTCATTTCCATTTAAAAACTAGCTAAAACAATATTTCATACTCAAAGCTC
GGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCAAAAAGCCACAAAAAACATTAAGCTTTTGAGCT
TGTGCAAAATATATAAAAACAAGTTAGCACAAAGTTAATCACATCAGGCACAAATAACGATTTCG
CAAATGATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAATCCCCCCTAA
AAAATGCAACTAGAGCAGAAATGCAACAAAAAATTAAATTTATGCAAACGATTTTTATATCACAA
TTTGAAATCGTGCAAACGGTTTTCATGCCTATAATCGCTCAAATTTTTTTTTTTGATATTTTGGG
TTCCAAAATCCTCCATAACTTGCACTTAACACTAAAAAATTAAAACCATTGCAAGTTATCATGTT
TCTCAATTTGAGCAAATTTAAAACGTTGGATTCAAGATATTAAAATCATTTCCATGCCAAA
Found at i:23844 original size:488 final size:488
Alignment explanation
Indices: 22893--23845 Score: 1419
Period size: 488 Copynumber: 2.0 Consensus size: 488
22883 CATTTTAAAC
* *
22893 TCCAAAATCCTCCATAACTTGCACTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATG
1 TCCAAAATCCTCCATAACTTGCACTTTAACA-TCTAAAAAATTAAAACCAATGCAAGTTATCATG
** * * *
22958 TTTCTCTGTTTGGGCAAGTTTAAAACATAGGATTCAAGATATTCAAATTCATTTCCATTTAAAAA
65 TTTCTCAATTTGAGCAAATTTAAAACATAGGATTCAAGATATTCAAACTCATTTCCATTTAAAAA
* *** * * *
23023 CTTGCTAAAACAATATTTCATACTTCAAAGGTTGGCTCTAGCAGAAATGGTTTTCAAAGAATGCA
130 CTTGCTAAAACAATATTTCATACTTCAAAGCTCCACTCTAGCAGAAATGGCTTCCAAAGAAAGCA
* * *
23088 AAAAGTTACGAAAGACATTAAGCTTTTGAGTTTGTGCAAAATATATAAAAACAAGTTAGCACACA
195 AAAAGTTACAAAAGACATTAAGCTTTTGAGCTTGTGCAAAATATATAAAAACAAGATAGCACACA
** * * *
23153 GTTAATCACATCAGGCACCTCTAATTATTTGGCAAATGATGTCCAAATATCAGCAGCATCCCACA
260 GTTAATCACATCAGGCACCAATAATGATTTCGCAAATGATATCCAAATATCAGCAGCATCCCACA
* *
23218 AATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCATCTAGAGCAGAAATGCAATGAAAAAT
325 AATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCATCTACAGCAGAAACGCAATGAAAAAT
* * * *
23283 TAAATTTATGCAAACGATTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCTATAA
390 AAAAATCATGCAAACGATTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAA
23348 TCGCTCAAAATTTTTTTTTGTTGATATTTTGGGT
455 TCGCTCAAAATTTTTTTTTGTTGATATTTTGGGT
*
23382 TCCAAAATCCTCCATAACTTGCAC-TTAACA-CTAAAAAATTAAAACCATTGCAAGTTATCATGT
1 TCCAAAATCCTCCATAACTTGCACTTTAACATCTAAAAAATTAAAACCAATGCAAGTTATCATGT
* *
23445 TTCTCAATTTGAGCAAATTTAAAACGTTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAAC
66 TTCTCAATTTGAGCAAATTTAAAACATAGGATTCAAGATATTCAAACTCATTTCCATTTAAAAAC
23510 TTGCTAAAACAATATTTCATACTTCAAAGCTCCACTCTAGCAGAAATGGCTTCCAAAAGCAAAGC
131 TTGCTAAAACAATATTTCATACTTCAAAGCTCCACTCTAGCAGAAATGGCTTCC-AAAG-AAAGC
* ***
23575 ATAAAGTTACAAAAGACATTAAGCTTTTGAGCTTGTGTGTAATATATAAAAACAAGATAGCACAC
194 AAAAAGTTACAAAAGACATTAAGCTTTTGAGCTTGTGCAAAATATATAAAAACAAGATAGCACAC
* * ** *
23640 AGTTAATCACATCGGGCATCAATAATGATTTCGCAAATGATATCCAAATATTGGCAGCATCGCAC
259 AGTTAATCACATCAGGCACCAATAATGATTTCGCAAATGATATCCAAATATCAGCAGCATCCCAC
* * *
23705 AAATTCCTTAGAGCATTCATGAATGCCCCTAAAAAATGCGTCTCCAGCAGAAACGC-ATCGAAAA
324 AAATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCATCTACAGCAGAAACGCAAT-GAAAA
* *
23769 ATAAAAATCATGCAAAC-AGTTTTTATATCACAATTTGAAATTGTGCAAATGGTTTTCCTGCCCA
388 ATAAAAATCATGCAAACGA-TTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCA
*
23833 TAATTGCTCAAAA
452 TAATCGCTCAAAA
23846 ACAAAATTTT
Statistics
Matches: 414, Mismatches: 46, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
486 136 0.33
487 7 0.02
488 247 0.60
489 24 0.06
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (488 bp):
TCCAAAATCCTCCATAACTTGCACTTTAACATCTAAAAAATTAAAACCAATGCAAGTTATCATGT
TTCTCAATTTGAGCAAATTTAAAACATAGGATTCAAGATATTCAAACTCATTTCCATTTAAAAAC
TTGCTAAAACAATATTTCATACTTCAAAGCTCCACTCTAGCAGAAATGGCTTCCAAAGAAAGCAA
AAAGTTACAAAAGACATTAAGCTTTTGAGCTTGTGCAAAATATATAAAAACAAGATAGCACACAG
TTAATCACATCAGGCACCAATAATGATTTCGCAAATGATATCCAAATATCAGCAGCATCCCACAA
ATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCATCTACAGCAGAAACGCAATGAAAAATA
AAAATCATGCAAACGATTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAAT
CGCTCAAAATTTTTTTTTGTTGATATTTTGGGT
Found at i:27888 original size:488 final size:488
Alignment explanation
Indices: 23916--28440 Score: 4718
Period size: 487 Copynumber: 9.2 Consensus size: 488
23906 AAACTAAAAC
* * ** * * *
23916 GAAACACAACGAAAAATTGTAATCATGCAAACAGTTTTTATATTAAAATTTGAAATC--G--AAT
1 GAAACGCAATGAAAAATTAAAATCATGCAAACGGTTTTTATATCACAATTTGAAATCGTGCAAAT
* ** * * * *
23977 GGTTTTCATGCCTATTGTCGCTCAAAAACAAAATTTTGATATTTAGGGCTCTAAAATCCTCCATA
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
24042 ACTTGCAC-TTAACAC--TGAAAAATTAAAACC-ATCGCAAGTTATCATGTTTCT-TGGTTTGAG
131 ACTTGCACTTTAACACTGTGAAAAATTAAAACCAAT-GCAAGTTATCATGTTTCTCT-GTTTGAG
* * * *
24102 GAAGCTTAAAACATTGGATTCAAGATATTTAAACTCATTTCCATTTAAAAACTTGCTAAAA-AAT
194 CAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCAATTAAAAACTTGCTAAAACAAT
* * * * *
24166 ATTTCATACTTCAAAGCTT-GGTTCTAGCAGAAATGGTTTTAAAAGC-AAGTATAAAGCAACGAA
259 ATTTCATACTTCAAAG-TTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAA
* * * *
24229 AAACATTAAGCTTTTCAGCTTATGCATAATATATAAAAATAAGTTAGCACACAATTAATCACATC
323 AAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAGTTAATCACATC
* * *
24294 AGGCGCCAATAAGGATTTCGCAAATTATATCCAAATATCAGCAGCATCAGACAAATTCCTTCA-A
388 AGGCGCCAATAACGATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTT-AGA
* * * * *
24358 GCATTCATAAATCCCCCTAAAAACTACGTCTAGAGCA
452 GCATTCATGAATTCCCCTAAAAAATGCATCTAGAGCA
* * * * * * *
24395 AAAATGCAACGAAAAATTAAAATCACGCAAATGATTTTTATATCTCAATTTGAAATCGTGCAAAT
1 GAAACGCAATGAAAAATTAAAATCATGCAAACGGTTTTTATATCACAATTTGAAATCGTGCAAAT
* * *
24460 GGTTTTCATGCCAATAATTGCTCAAAAACAAAAATTTTGACATTTTGAGCTCCAAAATCATCCAT
66 GGTTTTCATGCCCATAATCGCTCAAAAAC-AAAATTTTGACATTTTGAGCTCCAAAATCCTCCAT
* * * *
24525 AACTTGCACTTTAAAACTGTGAAAAATTAAAATCAAAGCAAGTTATCATG-TTCGTATGTTTGAG
130 AACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTC-TCTGTTTGAG
* * *
24589 CAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCTATTTTAAAACTTGCTAAAACAAT
194 CAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCAATTAAAAACTTGCTAAAACAAT
* *
24654 ACTTCATACTTCAAAGCTT-GGCTCTAGTAGAAATGGTTTTCAAAGCAAAGCATAAAGC--C--A
259 ATTTCATACTTCAAAG-TTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAA
* *
24714 CAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAGTTAATCACATT
323 AAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAGTTAATCACATC
* * *
24779 AGGTGCCAATAACGATTTCACAAATGATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAG
388 AGGCGCCAATAACGATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAG
24844 CATTCATGAA-TCCCCTTAAAAAATGCATCTAGAGCA
453 CATTCATGAATTCCCC-TAAAAAATGCATCTAGAGCA
* * ** * * *
24880 GAAAGGCAATGAAAAATTAAATTTGTGCAAACGATTTTTATATCACGATTTGAAATTGTGCAAAT
1 GAAACGCAATGAAAAATTAAAATCATGCAAACGGTTTTTATATCACAATTTGAAATCGTGCAAAT
* *
24945 -GTGTTTCATGCCCATAATTGCTCAAAAACAAAAATTTTGACATTTTAAGCTCCAAAATCCTCCA
66 GGT-TTTCATGCCCATAATCGCTCAAAAAC-AAAATTTTGACATTTTGAGCTCCAAAATCCTCCA
* * *
25009 TCACTTGCAGTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAG
129 TAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAG
* * * * *
25074 CAAGTTTAAAACATAGGTTTCAAGATATTCAAATTCATTTCCATTTACAAACTTGCTAAAACAAT
194 CAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCAATTAAAAACTTGCTAAAACAAT
* * * * *
25139 ATGTT-ATACTTCAAAGCTCAGCTCTAGTAGAAATGGTTTTCAAAGCAAAGCATAATGCTTCGAA
259 AT-TTCATACTTCAAAGTTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTAC-AA
* *
25203 AAAACATTAAGCTTTTGAGCTTCTGCATATTACATATAAAAACAAGTTAGCACACAGTTAATCAC
322 AAAACATTAAGCTTTTGAGCTTGTGCATA--ATATATAAAAACAAGTTAGCACACAGTTAATCAC
* * * * * * * * *
25268 AACAGGCACCAATAACAAATTCACAAATAAAATCCAAATATCAGGAGCATCCCACAAATTCCTTA
385 ATCAGGCGCCAATAACGATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTA
* * * *
25333 CAGCATTCGT-AAATCCTCCTAAAAAATGCATATAGAGCA
450 GAGCATTCATGAATTCC-CCTAAAAAATGCATCTAGAGCA
* * ** ** *
25372 GAAACGCAAAGAAAAATTAAATTTGTGCAAACTATTTTTATATCACAATTTGAAACCGTGCAAAT
1 GAAACGCAATGAAAAATTAAAATCATGCAAACGGTTTTTATATCACAATTTGAAATCGTGCAAAT
* *
25437 -GTCTTTCATGCCCATAATTGCTCAAAAACAAAAATTTTGACATTTTAAGCTCCAAAATCCTCCA
66 GGT-TTTCATGCCCATAATCGCTCAAAAAC-AAAATTTTGACATTTTGAGCTCCAAAATCCTCCA
* *
25501 TAACTTGCAGTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAG
129 TAACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAG
* * **
25566 CAAGTTTAAAACATAGGTTTCAAGATATTCAAACTCA-TTCC-CCTAAAAATGCGTTTATAGC-A
194 CAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCAATTAAAAA--C---T-T-GCTA
* * * * ** *** * *** * *
25628 GAAACCCATTGAAAAATTAAAATCAAGCAAACGGTTTTTATAACTCAATTTGAAATCG--TGCAA
252 -AAA--C----AATATTTCATA-C-TTCAAA--G---TT-CGGCTCTAGCAGAAATGGTTTTCAA
* * ** * * *
25691 ATGGTTTTC-AAGCGTATAATCGCTA-AAAAGCAAAATTTTGACATTTTGGGC---TCCAAAATC
302 A--G----CAAAGC--ATAA-AGCTACAAAA--AACATTAAG-C-TTTTGAGCTTGTGCATAAT-
* * * ** * * ** * ** * * * *
25751 CTCCGTAAAATTGCACTTTA--ACACTGTGAAAAAAAAAAAG-ACCAA-GAC-ATTCATACTTCA
353 AT--ATAAAA--ACAAGTTAGCACACAGTTAATCACATCAGGCGCCAATAACGATT--T-C-GCA
* ** * * * * * * ** * * * *
25811 AAGCTCGGCTCTAGTAGAAATGGTTTTCA-AAGCA-AAGCATAAAGCTGCGAAAAACAAT-AAGC
410 AA--T--G--ATA-TCCAAA----TATCAGCAGCATCA-CACAAA-TTCCTTAGAGCATTCATG-
** * ** * * *
25873 TTTTCCGCT----TGTGCATGATATA-TA
461 AATTCCCCTAAAAAATGCAT-CTAGAGCA
* * * * *
25897 GAAACGCAAGGAAAAATTAAAATCGTGCAAACGGGTTTTATATCATAATTTGAAATTGTGCAAAT
1 GAAACGCAATGAAAAATTAAAATCATGCAAACGGTTTTTATATCACAATTTGAAATCGTGCAAAT
* * * *
25962 GGTTTTCATACCCTTAATCGCTCAAAAACAAAATTTTGACATTTGGAGCTCCAAAATCGTCCATA
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
** * *
26027 ACTTGCACTTTAACAC--TGAAAAATTAAAATTAATGCAAGTTATCATGTTTCTCTATTTGAACA
131 ACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
* * *
26090 AGTTTAAAACATTGGACTCAAGATATTCAAAC-CATTTCCAATTGAAAACTTACTAAAACAATAT
196 AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCAATTAAAAACTTGCTAAAACAATAT
* * *
26154 TTTATACTTCAAAGCTAGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAA
261 TTCATACTTCAAAGTTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTAC-AAAAA
* * * *
26219 ACATTAAGCTTTTGAGCCTATGAATAATATATAAAAACAAGTTAGCAGACAGTTAATCACATCAG
325 ACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCAG
* * * * * *
26284 GCACCAATAATGATTTCGGAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTATAGCA
390 GCGCCAATAACGATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGCA
* *
26349 TTCATGAATCCCCCTAAAAAATGCATCTAAAGCA
455 TTCATGAATTCCCCTAAAAAATGCATCTAGAGCA
* * * *
26383 GAAACGCAATGAAAAATTAAAATCGTGCAAACGGTTTTTATAGCATAATTTGAAATTGTGCAAAT
1 GAAACGCAATGAAAAATTAAAATCATGCAAACGGTTTTTATATCACAATTTGAAATCGTGCAAAT
** * *
26448 GGTTTTCATGCCCATAATTACTGAAAAACAAAATTTTGACATTTTGAGCTCCGAAAATCATCCAT
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCC-AAAATCCTCCAT
* * * *
26513 AACTTGCACTTTTAACACTTTGAAAGATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAG
130 AACTTGCAC-TTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAG
* * * *
26578 CAAGTTTAAAACATTAGACTCAAGATATTGTC-ATC-CATTTCCAATTAAAAACTTACTAAAACA
194 CAAGTTTAAAACATTGGATTCAAGATA-T-TCAAACTCATTTCCAATTAAAAACTTGCTAAAACA
* * *
26641 ACTA-TTCATACTTCAGAAGCTCGGC-CTAAGCAGAACATGGTTTTTCAACGCAAAGCAAAGAAA
257 A-TATTTCATACTTCA-AAGTTCGGCTCT-AGCAGAA-ATGG-TTTTCAAAGCAAAGC--ATAAA
* * *
26704 GCTGCAAAAAACATTAAGCTTTTGAGCTTGTTCATAATATACAAAAACAAGTTA-CTACACAGTT
315 GCTACAAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGC-ACACAGTT
* * * * *
26768 AATCACATTAGGCACCAA-AATTGATTTCGCAAATGATATCCAAATATTAGCAGCATCACAAAAA
379 AATCACATCAGGCGCCAATAA-CGATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAA
* * *
26832 TTCCTTAGAGCATTCATGAA-TCTCCCTAAAAAATGCGTCTGGAGTA
443 TTCCTTAGAGCATTCATGAATTC-CCCTAAAAAATGCATCTAGAGCA
* * ** * * * *
26878 GAAACGCAATGAAAAATTAAAACCTTGTGAACGGTTTATATATCACAACTTGAAATCGTACAAAA
1 GAAACGCAATGAAAAATTAAAATCATGCAAACGGTTTTTATATCACAATTTGAAATCGTGCAAAT
* * *
26943 GGTTTTCACGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGGGCTCCAAAATCCTGCATA
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
* * *
27008 ACTTGCTCTTTAACACTGTAAAAAATTAAAACCAGTGCAAGTTATCATGTTTCTCTGTTTGAGCA
131 ACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
* * * * *
27073 AATATAAAACATTGGACTCAAGATATTCAAAC-CATTTCCAATTACAAACTTACTAAAACAATAT
196 AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCAATTAAAAACTTGCTAAAACAATAT
* * *
27137 TTCGTACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCTTAAAGCTACAAAAAA
261 TTCATACTTCAAAGTTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAA
*
27202 CATTAAGCTTTTGAGCTTGTGCATAATTTATAAAAACAAGTTAGCACACAGTTAATCACATCAGG
326 CATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCAGG
** * * *
27267 AACCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATTC-CACAAAGTCCATAGAGCA
391 CGCCAATAACGATTTCGCAAATGATATCCAAATATCAGCAGCA-TCACACAAATTCCTTAGAGCA
* * * *
27331 TTGATGAATGCCCCTAAAAAATGCATGTAGAGTA
455 TTCATGAATTCCCCTAAAAAATGCATCTAGAGCA
* * * *
27365 GAAACGCAATGAAAAATTAAAATCATTCAAACGGTTTCTACACCACAATTTGAAATCGTGCAAAT
1 GAAACGCAATGAAAAATTAAAATCATGCAAACGGTTTTTATATCACAATTTGAAATCGTGCAAAT
* * * * * *
27430 GTTTTTCATACGCATAATCACTCAAAAACAAAATTTTAACATTTTGAGCTCCAAAATCATCCATA
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
* *
27495 ACTTGCACTTTAACACTGTGAAAATTTAACACCAATGCAAGTTATCATGTTTC-CTTGTTTGAGC
131 ACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTC-TGTTTGAGC
* * * ** *
27559 AAGTTTAAAACATTGGATTCAAGATATTCAACCTCTTTTCCATTTAAAAAGATGCTAAAGCAATA
195 AAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCAATTAAAAACTTGCTAAAACAATA
* * ** *
27624 TTTCATACTTCAAAGTTCGGCTCTAGCA-AAATGGTTTTCAAAGAAAAGCATAAAGTTATGAAAG
260 TTTCATACTTCAAAGTTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAA
* * *
27688 ACATTAAGCTTTTTGTGCTTGTGCATAATATATAAAAACAAGTTAGCAAACATTTAATCACATCA
325 ACATTAAGC-TTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCA
* *
27753 GGTGCCAATAACGATTTCGCAAATGATATCCAAATATTAGCAGCATCACACAAATTCCTTAGAGC
389 GGCGCCAATAACGATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGC
* *
27818 ATTCATGAATTCCCCTAAAAAATGCGTCTAGAGAA
454 ATTCATGAATTCCCCTAAAAAATGCATCTAGAGCA
* * * * * * *
27853 GAAAAGCAACGAAAAATTAAAACCAAGCAAACGGTTTTTATACCATAATTTGAAATCATGCAAAT
1 GAAACGCAATGAAAAATTAAAATCATGCAAACGGTTTTTATATCACAATTTGAAATCGTGCAAAT
* * * * *
27918 GGCTTTCATGCCCATAATCGCCCAAAAACAAATTTTTGACATTTTGGGCTCCAAAAGCCTCCATA
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
* *
27983 ACTTGCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCA
131 ACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
* * *
28048 AGTTTAAAATATTGGACTCAAGATATTCAAA-TCATTTCCAATTAAAAACTTACTAAAACAATAT
196 AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCAATTAAAAACTTGCTAAAACAATAT
* *
28112 TTCGTACTTCAAAGCTTC-GCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATATAGCTACAAAAA
261 TTCATACTTCAAAG-TTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAA
* * *** * * * * *
28176 ACATTAGGCTTTTGAGCCTGCAAATAATATATAAAAACAAGTTAGCATACGGCTAATCATATTAG
325 ACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCAG
* * *
28241 GCGCCAATAACGATTTCAG-AAATAATATCTAAATATCAGCAGCATCCCACAAATTCCTTAGAGC
390 GCGCCAATAACGATTTC-GCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGC
*
28305 AGTCATGAA-TCCCCATAAAAAAATGCATCTAGAGCA
454 ATTCATGAATTCCCC-T-AAAAAATGCATCTAGAGCA
* * * *
28341 GAAACGCAATGAAAAATTAAAATCATGCAAATGGTTTTTATAGCATAATTTGAAATCATGCAAAT
1 GAAACGCAATGAAAAATTAAAATCATGCAAACGGTTTTTATATCACAATTTGAAATCGTGCAAAT
28406 GGTTTT-ATGCCCATAATCGCTCAAAAACAAAATTT
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTT
28441 GGCACTTTAA
Statistics
Matches: 3412, Mismatches: 487, Indels: 286
0.82 0.12 0.07
Matches are distributed among these distances:
479 45 0.01
481 1 0.00
482 16 0.00
483 39 0.01
484 47 0.01
485 426 0.12
486 132 0.04
487 689 0.20
488 568 0.17
489 25 0.01
490 104 0.03
491 70 0.02
492 409 0.12
493 82 0.02
494 60 0.02
495 253 0.07
496 22 0.01
497 17 0.00
498 5 0.00
499 5 0.00
502 13 0.00
503 6 0.00
504 6 0.00
505 4 0.00
506 1 0.00
507 1 0.00
508 4 0.00
509 6 0.00
510 8 0.00
511 13 0.00
514 8 0.00
515 8 0.00
516 18 0.01
517 30 0.01
518 6 0.00
519 12 0.00
520 1 0.00
521 3 0.00
522 76 0.02
523 5 0.00
524 48 0.01
525 89 0.03
526 6 0.00
528 9 0.00
529 13 0.00
530 3 0.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (488 bp):
GAAACGCAATGAAAAATTAAAATCATGCAAACGGTTTTTATATCACAATTTGAAATCGTGCAAAT
GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
ACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCAATTAAAAACTTGCTAAAACAATAT
TTCATACTTCAAAGTTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAA
CATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCAGG
CGCCAATAACGATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGCAT
TCATGAATTCCCCTAAAAAATGCATCTAGAGCA
Found at i:27996 original size:975 final size:969
Alignment explanation
Indices: 23916--30909 Score: 7878
Period size: 975 Copynumber: 7.2 Consensus size: 969
23906 AAACTAAAAC
* ** * * ** *
23916 GAAACACAACGAAAAATTGTAATCATGCAAACAGTTTTTATATTAAAATTTGAAATC--G--AAT
1 GAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTTTTATAGCATAATTTGAAATCGTGCAAAT
* ** * * * * *
23977 GGTTTTCATGCCTATTGTCGCTCAAAAACAAAATTTTGATATTTAGGGCTCTAAAATCCTCCATA
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCGTCCATA
* *
24042 ACTTGCAC-TTAACAC--TGAAAAATTAAAA-CCATCGCAAGTTATCATGTTTCT-TGGTTTGAG
131 ACTTGCACTTTAACACTGTGAAAAATTAAAATCAAT-GCAAGTTATCATGTTTCTCT-ATTTGAG
* * * * * *
24102 GAAGCTTAAAACATTGGATTCAAGATATTTAAACTCATTTCCATTTAAAAACTTGCTAAAA-AAT
194 CAAGTTTAAAACATTGGACTCAAGATATTCAAAC-CATTTCCAATTAAAAACTTACTAAAACAAT
* * * * * * *
24166 ATTTCATACTTCAAAGCTTGGTTCTAGCAGAAATGGTTTTAAAAGC-AAGTATAAAGCAACGAAA
258 ATTTCGTACTTCAAAGC-TCGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAA
* * ** * * *
24230 AACATTAAGCTTTTCAGCTTATGCATAATATATAAAAATAAGTTAGCACACAATTAATCACATCA
322 AACATTAAGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCA
* * * **
24295 GGCGCCAATAAGGATTTCGCAAATTATATCCAAATATCAGCAGCATCAGACAAATTCCTTCA-AG
387 GGCACCAATAACGATTTCG-AAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTT-AGAG
* * * * * * * *
24359 CATTCATAAATCCCCCTAAAAACTACGTCTAGAGCAAAAATGCAACGAAAAATTAAAATCACGCA
450 CATTCATGAAT-CCCCTAAAAAATGCATCTAGAGCAGAAACGCAATGAAAAATTAAAATCATGCA
* * * * *
24424 AATGATTTTTATATC-TCAATTTGAAATCGTGCAAATGGTTTTCATGCCAATAATTGCTCAAAAA
514 AACGGTTTTTATAGCAT-AATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAA
*
24488 CAAAAATTTTGACATTTTGAGCTCCAAAATCATCCATAACTTGCACTTTAAAACTGTGAAAAATT
578 C-AAAATTTTGACATTTTGAGCTCCAAAATCATCCATAACTTGCACTTTAACACT-TGAAAAATT
* * * *
24553 AAAATCAAAGCAAGTTATCATG-TTCGTATGTTTGAGCAAGTTTAAAACATTGGATTCAAGATAT
641 AAAATCAATGCAAGTTATCATGTTTC-TCTATTTGAGCAAGTTTAAAACATTGGACTCAAGATAT
* * * * * *
24617 TCAAACTCATTTCTATTTTAAAACTTGCTAAAACAATACTTCATACTTCAAAGCTTGGCTCTAGT
705 TCAAAC-CATTTCCAATTAAAAACTTACTAAAACAATATTTCATACTTCAAAG-TTGGCTCTAGC
* * *
24682 AGAAATGGTTTTCAAAGCAAAGCATAAAGC--C--ACAACATTAAGCTTTTGAGCTTGTGCATAA
768 AGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAACATTAAGCTTTTGAGCTTGCGAATAA
* ** * *
24743 TATATAAAAACAAGTTAGCACACAGTTAATCACATTAGGTGCCAATAACGATTTCACAAATGATA
833 TATATAAAAACAAGTTAGCACACAGTTAATCACATCAGGCACCAATAACGATTTCGCAAATAATA
24808 TCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAA-TCCCCTTAAAAAATGCAT
898 TCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAATTCCCC-TAAAAAATGCAT
*
24872 CTAGAGCA
962 CTAGAGAA
* * * * * * ** *
24880 GAAAGGCAATGAAAAATTAAATTTGTGCAAACGATTTTTATATCACGATTTGAAATTGTGCAAAT
1 GAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTTTTATAGCATAATTTGAAATCGTGCAAAT
* * *
24945 -GTGTTTCATGCCCATAATTGCTCAAAAACAAAAATTTTGACATTTTAAGCTCCAAAATCCTCCA
66 GGT-TTTCATGCCCATAATCGCTCAAAAAC-AAAATTTTGACATTTTGAGCTCCAAAATCGTCCA
* * * * *
25009 TCACTTGCAGTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAG
129 TAACTTGCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAG
* ** * * * *
25074 CAAGTTTAAAACATAGGTTTCAAGATATTCAAATTCATTTCCATTTACAAACTTGCTAAAACAAT
194 CAAGTTTAAAACATTGGACTCAAGATATTCAAA-CCATTTCCAATTAAAAACTTACTAAAACAAT
* * * *
25139 ATGTT-ATACTTCAAAGCTCAGCTCTAGTAGAAATGGTTTTCAAAGCAAAGCATAATGCTTCGAA
258 AT-TTCGTACTTCAAAGCTC-GCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTAC-AA
* *
25203 AAAACATTAAGCTTTTGAGCTTCTGC-ATATTACATATAAAAACAAGTTAGCACACAGTTAATCA
320 AAAACATTAAGCTTTTGAGC--CTGCGA-ATAATATATAAAAACAAGTTAGCACACAGTTAATCA
* * * * * *
25267 CAACAGGCACCAATAACAAATTCACAAATAAAATCCAAATATCAGGAGCATCCCACAAATTCCTT
382 CATCAGGCACCAATAACGATTTC-GAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTT
* * * * * * **
25332 ACAGCATTCGTAAATCCTCCTAAAAAATGCATATAGAGCAGAAACGCAAAGAAAAATTAAATTTG
446 AGAGCATTCATGAATCC-CCTAAAAAATGCATCTAGAGCAGAAACGCAATGAAAAATTAAAATCA
** * * * *
25397 TGCAAACTATTTTTATATCACAATTTGAAACCGTGCAAAT-GTCTTTCATGCCCATAATTGCTCA
510 TGCAAACGGTTTTTATAGCATAATTTGAAATCGTGCAAATGGT-TTTCATGCCCATAATCGCTCA
* * * *
25461 AAAACAAAAATTTTGACATTTTAAGCTCCAAAATCCTCCATAACTTGCAGTTTAACATTGTGAAA
574 AAAAC-AAAATTTTGACATTTTGAGCTCCAAAATCATCCATAACTTGCACTTTAACACT-TGAAA
* * * **
25526 AATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCAAGTTTAAAACATAGGTTTCAAGA
637 AATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTTTAAAACATTGGACTCAAGA
* *
25591 TATTCAAACTCATTCCCCTAAAAATGCGTTTATAGCAGAAACCCATTGAAAAATTAAAATCAAGC
702 TATTCAAAC-CATT-TCC----AA------T-TA--A-AAA--C-TT-----ACTAAAA-C-A--
* * * ** * *
25656 AAACGGTTTTTATAAC-TC-AATTTGAAATCGT-GC--AAATGGTTTTC-AAGC---GTATAATC
739 ATA----TTTCAT-ACTTCAAAGTTG-GCTC-TAGCAGAAATGGTTTTCAAAGCAAAGCATAA-A
* ** * * * * * **
25712 GCTA-AAAAGCAAAATTTTGACATTTTGGGC-T-CCAA-AATCCTCCGTAAAATTGCACTTTA--
796 GCTACAAAA--AACATTAAG-C-TTTTGAGCTTGCGAATAAT-AT--ATAAAA--ACAAGTTAGC
* * ** * ** * * * ** **
25771 ACACTGTGAAAAAAAAAAAG-ACCAA-GAC-ATTCATACTTCAAAGCTCGGCTCTAGTAGAAATG
852 ACACAGTTAATCACATCAGGCACCAATAACGATT--T-C-GCAAA--T----AATA-TCCAAA--
* * *** * * * ** * * * * ** * ** *
25833 GTTTTCA-AAGCAAAGCATAAAGCTGCGAAAAACAAT-AAGCTTTTCCGCT----TGTGCATGAT
904 --TATCAGCAGCATCCCACAAA-TTCCTTAGAGCATTCATG-AATTCCCCTAAAAAATGCAT-CT
* *
25892 ATA-TA
964 AGAGAA
* * * *
25897 GAAACGCAAGGAAAAATTAAAATCGTGCAAACGGGTTTTATATCATAATTTGAAATTGTGCAAAT
1 GAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTTTTATAGCATAATTTGAAATCGTGCAAAT
* * *
25962 GGTTTTCATACCCTTAATCGCTCAAAAACAAAATTTTGACATTTGGAGCTCCAAAATCGTCCATA
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCGTCCATA
* *
26027 ACTTGCACTTTAACAC--TGAAAAATTAAAATTAATGCAAGTTATCATGTTTCTCTATTTGAACA
131 ACTTGCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCA
*
26090 AGTTTAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTGAAAACTTACTAAAACAATATT
196 AGTTTAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATT
** *
26155 TTATACTTCAAAGCTAGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAAA
261 TCGTACTTCAAAGCT-CGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTAC-AAAAAA
** *
26220 CATTAAGCTTTTGAGCCTATGAATAATATATAAAAACAAGTTAGCAGACAGTTAATCACATCAGG
324 CATTAAGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCAGG
* *
26285 CACCAATAATGATTTCGGAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTATAGCAT
389 CACCAATAACGATTTC-GAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCAT
* *
26350 TCATGAATCCCCCTAAAAAATGCATCTAAAGCAGAAACGCAATGAAAAATTAAAATCGTGCAAAC
453 TCATGAAT-CCCCTAAAAAATGCATCTAGAGCAGAAACGCAATGAAAAATTAAAATCATGCAAAC
* ** *
26415 GGTTTTTATAGCATAATTTGAAATTGTGCAAATGGTTTTCATGCCCATAATTACTGAAAAACAAA
517 GGTTTTTATAGCATAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAA
*
26480 ATTTTGACATTTTGAGCTCCGAAAATCATCCATAACTTGCACTTTTAACACTTTGAAAGATTAAA
582 ATTTTGACATTTTGAGCTCC-AAAATCATCCATAACTTGCAC-TTTAACAC-TTGAAAAATTAAA
*
26545 ATCAATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTTTAAAACATTAGACTCAAGATATTGTC
644 ATCAATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTTTAAAACATTGGACTCAAGATA-T-TC
* *
26610 -ATCCATTTCCAATTAAAAACTTACTAAAACAACTA-TTCATACTTCAGAAGCTCGGC-CTAAGC
707 AAACCATTTCCAATTAAAAACTTACTAAAACAA-TATTTCATACTTCA-AAG-TTGGCTCT-AGC
* * * ***
26672 AGAACATGGTTTTTCAACGCAAAGCAAAGAAAGCTGCAAAAAACATTAAGCTTTTGAGCTTGTTC
768 AGAA-ATGG-TTTTCAAAGCAAAGC--ATAAAGCTACAAAAAACATTAAGCTTTTGAGCTTGCGA
* * *
26737 ATAATATACAAAAACAAGTTA-CTACACAGTTAATCACATTAGGCACCAA-AATTGATTTCGCAA
829 ATAATATATAAAAACAAGTTAGC-ACACAGTTAATCACATCAGGCACCAATAA-CGATTTCGCAA
* * * *
26800 ATGATATCCAAATATTAGCAGCATCACAAAAATTCCTTAGAGCATTCATGAA-TCTCCCTAAAAA
892 ATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAATTC-CCCTAAAAA
* * *
26864 ATGCGTCTGGAGTA
956 ATGCATCTAGAGAA
* * * ** * * * * * *
26878 GAAACGCAATGAAAAATTAAAACCTTGTGAACGGTTTATATATCACAACTTGAAATCGTACAAAA
1 GAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTTTTATAGCATAATTTGAAATCGTGCAAAT
* * * *
26943 GGTTTTCACGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGGGCTCCAAAATCCTGCATA
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCGTCCATA
* * * * *
27008 ACTTGCTCTTTAACACTGTAAAAAATTAAAACCAGTGCAAGTTATCATGTTTCTCTGTTTGAGCA
131 ACTTGCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCA
* * *
27073 AATATAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTACAAACTTACTAAAACAATATT
196 AGTTTAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATT
*
27138 TCGTACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCTTAAAGCTACAAAAAAC
261 TCGTACTTCAAAGCTC-GCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAAC
* * * * *
27203 ATTAAGCTTTTGAGCTTGTGCATAATTTATAAAAACAAGTTAGCACACAGTTAATCACATCAGGA
325 ATTAAGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCAGGC
* * * * *
27268 ACCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATTCCACAAAGTCCATAGAGCATT
390 ACCAATAACGATTTCG-AAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATT
* * * *
27333 GATGAATGCCCCTAAAAAATGCATGTAGAGTAGAAACGCAATGAAAAATTAAAATCATTCAAACG
454 CATGAAT-CCCCTAAAAAATGCATCTAGAGCAGAAACGCAATGAAAAATTAAAATCATGCAAACG
* * * * * * * *
27398 GTTTCTACACCACAATTTGAAATCGTGCAAATGTTTTTCATACGCATAATCACTCAAAAACAAAA
518 GTTTTTATAGCATAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAA
* * * *
27463 TTTTAACATTTTGAGCTCCAAAATCATCCATAACTTGCACTTTAACACTGTGAAAATTTAACACC
583 TTTTGACATTTTGAGCTCCAAAATCATCCATAACTTGCACTTTAACACT-TGAAAAATTAAAATC
* * *
27528 AATGCAAGTTATCATGTTTC-CTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAACC
647 AATGCAAGTTATCATGTTTCTC-TATTTGAGCAAGTTTAAAACATTGGACTCAAGATATTCAAAC
* * ** * *
27592 TCTTTTCCATTTAAAAAGATGCTAAAGCAATATTTCATACTTCAAAGTTCGGCTCTAGCA-AAAT
711 -CATTTCCAATTAAAAACTTACTAAAACAATATTTCATACTTCAAAGTT-GGCTCTAGCAGAAAT
* * ** * * * *
27656 GGTTTTCAAAGAAAAGCATAAAGTTATGAAAGACATTAAGCTTTTTGTGCTTGTGCATAATATAT
774 GGTTTTCAAAGCAAAGCATAAAGCTACAAAAAACATTAAGC-TTTTGAGCTTGCGAATAATATAT
* * ** *
27721 AAAAACAAGTTAGCAAACATTTAATCACATCAGGTGCCAATAACGATTTCGCAAATGATATCCAA
838 AAAAACAAGTTAGCACACAGTTAATCACATCAGGCACCAATAACGATTTCGCAAATAATATCCAA
* * *
27786 ATATTAGCAGCATCACACAAATTCCTTAGAGCATTCATGAATTCCCCTAAAAAATGCGTCTAGAG
903 ATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAATTCCCCTAAAAAATGCATCTAGAG
27851 AA
968 AA
* * ** * *
27853 GAAAAGCAACGAAAAATTAAAACCAAGCAAACGGTTTTTATACCATAATTTGAAATCATGCAAAT
1 GAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTTTTATAGCATAATTTGAAATCGTGCAAAT
* * * * * *
27918 GGCTTTCATGCCCATAATCGCCCAAAAACAAATTTTTGACATTTTGGGCTCCAAAAGCCTCCATA
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCGTCCATA
27983 ACTTGCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCA
131 ACTTGCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCA
* *
28048 AGTTTAAAATATTGGACTCAAGATATTCAAATCATTTCCAATTAAAAACTTACTAAAACAATATT
196 AGTTTAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATT
*
28113 TCGTACTTCAAAGCTTCGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATATAGCTACAAAAAAC
261 TCGTACTTCAAAGC-TCGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAAC
* * * * * * *
28178 ATTAGGCTTTTGAGCCTGCAAATAATATATAAAAACAAGTTAGCATACGGCTAATCATATTAGGC
325 ATTAAGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCAGGC
* * *
28243 GCCAATAACGATTTCAGAAATAATATCTAAATATCAGCAGCATCCCACAAATTCCTTAGAGCAGT
390 ACCAATAACGATTTC-GAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATT
*
28308 CATGAATCCCCATAAAAAAATGCATCTAGAGCAGAAACGCAATGAAAAATTAAAATCATGCAAAT
454 CATGAATCCCC-T-AAAAAATGCATCTAGAGCAGAAACGCAATGAAAAATTAAAATCATGCAAAC
*
28373 GGTTTTTATAGCATAATTTGAAATCATGCAAATGGTTTT-ATGCCCATAATCGCTCAAAAAC--A
517 GGTTTTTATAGCATAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAA
28435 A-----A-A-TTT--G---------------------GCACTTTAACAC-TGAAAAATTAAAATC
582 ATTTTGACATTTTGAGCTCCAAAATCATCCATAACTTGCACTTTAACACTTGAAAAATTAAAATC
* *
28469 AAAGCAAGTTATCATGTTTCTCTATTTGAGCAAGTTTAAAACATTGGACTCAAGATATTCATACC
647 AATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTTTAAAACATTGGACTCAAGATATTCAAACC
* *
28534 ATTTCCAATTAAAAACTTACTAAAACAATATTTCATACTTCAAAACTTGGCTCTAGCAGAAAAGG
712 ATTTCCAATTAAAAACTTACTAAAACAATATTTCATACTTC-AAAGTTGGCTCTAGCAGAAATGG
* *
28599 TTTTCAAAGCAAAGCATAAAGGTACAAAAAACATTAAGCTTTTGAGCCTGCGAATAATATATAAA
776 TTTTCAAAGCAAAGCATAAAGCTACAAAAAACATTAAGCTTTTGAGCTTGCGAATAATATATAAA
* *
28664 AACAAGTTAGCACATAGTTAATCACATCAGGCACTAATAACGATTTC-CGAAATAATATCCAAAT
841 AACAAGTTAGCACACAGTTAATCACATCAGGCACCAATAACGATTTCGC-AAATAATATCCAAAT
* * *
28728 ATCAGCACCATCCCACAATTTCCTTAGAGCATTCATGAA-TCCCCTAAAAAATGCATCGAGA-AC
905 ATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAATTCCCCTAAAAAATGCATCTAGAGA-
28791 A
969 A
** * *
28792 GAAATACAACAAAAAATTAAAATCGTGCAAACGGTTTTTATAGCATAATTTGAAATTGTGCAAAT
1 GAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTTTTATAGCATAATTTGAAATCGTGCAAAT
* *
28857 AGTTTTCAAGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCGTCCATA
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCGTCCATA
* * *
28922 ACTTGCACTTTAATACTGTGAAAACTTAAAAATCAATGCAAGTTATCATGTTGCTCTATTTGAGC
131 ACTTGCACTTTAACACTGTGAAAAATT-AAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGC
*
28987 AAGTTTTAAAACATTTGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATA
195 AAG-TTTAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATA
* * * *
29052 TTTCGTACTTCGAAGCTCAGCCCTAGCAGAAATGGTTTTGAAAGCAAGGCATAAAGCTACAAAAA
259 TTTCGTACTTCAAAGCTC-GCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAA
*
29117 ACATTAAGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACATAGTTAATCACATCAG
323 ACATTAAGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCAG
* *
29182 GCACCAATAACGATTTCGGAAATAATATCCAAATATCAGTAGCATCTCACAAATTCCTTAGAGCA
388 GCACCAATAACGATTTC-GAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCA
* * *
29247 TTCATGAATCCCCCTTAAAAAGGCATCTAGAGCAGAAACGCAATGAAAAATTGAAATCATGCAAA
452 TTCATGAAT-CCCCTAAAAAATGCATCTAGAGCAGAAACGCAATGAAAAATTAAAATCATGCAAA
* * * * * * *
29312 TGGGTTTAATAGCAAAATTTGAAATTGTGCAAATGGTTTTCGTGCCCTTAATCGCTCAAAAACAA
516 CGGTTTTTATAGCATAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAA
*
29377 AATTTTGACATTTTGAGCTCCAAAATCGTCCATAACTTGCACTTTAACACTGTGAAAAATTAAAA
581 AATTTTGACATTTTGAGCTCCAAAATCATCCATAACTTGCACTTTAACACT-TGAAAAATTAAAA
* * *
29442 TTAATGCAAGTTATCATGTTTCTCTATTTGAACAAGTTTAAAACATTGGACTCAAGAAATTCAAA
645 TCAATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTTTAAAACATTGGACTCAAGATATTCAAA
* * * *
29507 CCATTTCCAATTGAAAACTTACTAAAACAATTTTTTATACTTCAAAGCTAGGCTCTAGCAGAAAT
710 CCATTTCCAATTAAAAACTTACTAAAACAATATTTCATACTTCAAAG-TTGGCTCTAGCAGAAAT
*
29572 GGTTTTCAAAGCAAAGCATAAAGCTACAAAAAAACATTAAGCTTTTGAGCTTACGAATAATATAT
774 GGTTTTCAAAGCAAAGCATAAAGCTAC-AAAAAACATTAAGCTTTTGAGCTTGCGAATAATATAT
*
29637 AAAAACAAGTTAG--CACAGTTAATCACATCAGGCACCAATAACAATTTCAAG-AAATAATATCC
838 AAAAACAAGTTAGCACACAGTTAATCACATCAGGCACCAATAACGATTTC--GCAAATAATATCC
* * * * * *
29699 AAATATCAGCAGCTTCCCAGAAATTCCCTAAAGCGTTCATGAATCCCCCTAAAAAATGCATCTAG
901 AAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAATTCCCCTAAAAAATGCATCTAG
*
29764 AGCA
966 AGAA
* * * ***
29768 GAAACGCAACAAAAAATTAAAATCATGCAAACGGTTTTTATAGCATAATTTGAAATTGTGTGGAT
1 GAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTTTTATAGCATAATTTGAAATCGTGCAAAT
* ** * * *
29833 GGTTTTCATGCACATAATTACTCAAAAACAAAGTATTGACATTTTGAGCTCCAAAATCATCCA-A
66 GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCGTCCATA
29897 ACTTGCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCA
131 ACTTGCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCA
* *
29962 AGTTTAAAATATTGGACTCAAGATATTCAAATCATTTCCAATTAAAAACTTACTAAAACAATATT
196 AGTTTAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATT
* *
30027 TCGTACTTCAAAGCTTCGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATATAGCTAAAAAAAAC
261 TCGTACTTCAAAGC-TCGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAAC
* * * * * * *
30092 ATTAGGCTTTTGAGCCTGCAAATAATATATAAAAACAAGTTAGCATACGGCTAATCATATTAGGC
325 ATTAAGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCAGGC
* * *
30157 ACCAATAACGATTTCAGAAATAATATCTAAATATCAGCAGCATCCCACAAATTCCTTAGGGCAGT
390 ACCAATAACGATTTC-GAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATT
* *
30222 CATGAATCCCCATAAAAAAATGCATCTAGAGCAGAAACGCAACGAAAAATTAAAATCGTGCAAAC
454 CATGAATCCCC-T-AAAAAATGCATCTAGAGCAGAAACGCAATGAAAAATTAAAATCATGCAAAC
* * *
30287 GGTTTTTATAGCATAGTTTGAAATCATGCAAATGGTTTTCGTGCCC-TAATCGCTCAAAAACAAA
517 GGTTTTTATAGCATAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAA
* * * *** *
30351 A-TTTGGCATTTTGTGCTCCAACATTGCCCATAACATGCACTTTAACAC-TGAAAAATTAAAATC
582 ATTTTGACATTTTGAGCTCCAAAATCATCCATAACTTGCACTTTAACACTTGAAAAATTAAAATC
* *
30414 AATGCAAGTTATCATGTTTCTCTATTTGAGCTAGTTTAAAACATTGGACTCATGATATTCAAACC
647 AATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTTTAAAACATTGGACTCAAGATATTCAAACC
* * *
30479 ATTTCCAATTAAAAACTTACTAAAACAATATTTCATACTTCAAAACTTGGCTCTAGCGGAAAAGG
712 ATTTCCAATTAAAAACTTACTAAAACAATATTTCATACTTC-AAAGTTGGCTCTAGCAGAAATGG
* * *
30544 TTTTCAAAGCAAAGCATAAAGGTACAAAAAACATTAAGCTTTTGAGCCTACGAATAATATATAAA
776 TTTTCAAAGCAAAGCATAAAGCTACAAAAAACATTAAGCTTTTGAGCTTGCGAATAATATATAAA
* * *
30609 AACAAGTTAGCACACAGTTAATCACATCGGGCACCAATAACTATTTCGAAAATAATATCCAAATA
841 AACAAGTTAGCACACAGTTAATCACATCAGGCACCAATAACGATTTCGCAAATAATATCCAAATA
* * * *
30674 TCAGCAGCATCCCACAAACTCCTTAAAGCATTCATGAATCCCCCTAAAAAATGCATCTAGAGCA
906 TCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAATTCCCCTAAAAAATGCATCTAGAGAA
* * * * *
30738 GAAACGCAATGAAAAATAAAAATCGTGGAAATGATTTTTATAGCATAATTTGAAATCGTGCAAAT
1 GAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTTTTATAGCATAATTTGAAATCGTGCAAAT
* * * * * *
30803 GGTTTTCATGTCCATAATC-ATGC-GAAAGAAAATTTTAATATTTTGAGCTCCAAAATCGTCCAT
66 GGTTTTCATGCCCATAATCGCT-CAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCGTCCAT
*
30866 AACTTGCACTTTAGCACTGTGAAAAATTAAAATCAATGCAAGTT
130 AACTTGCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTT
30910 TAAAACATTG
Statistics
Matches: 5134, Mismatches: 679, Indels: 428
0.82 0.11 0.07
Matches are distributed among these distances:
938 1 0.00
939 160 0.03
940 281 0.05
941 374 0.07
942 5 0.00
943 14 0.00
948 1 0.00
949 1 0.00
950 3 0.00
952 1 0.00
964 44 0.01
966 4 0.00
967 3 0.00
968 26 0.01
969 120 0.02
970 348 0.07
971 36 0.01
972 137 0.03
973 317 0.06
974 195 0.04
975 807 0.16
976 291 0.06
977 336 0.07
978 20 0.00
979 17 0.00
980 111 0.02
981 165 0.03
982 257 0.05
983 159 0.03
984 2 0.00
985 3 0.00
986 6 0.00
987 11 0.00
988 9 0.00
989 31 0.01
990 9 0.00
991 10 0.00
992 12 0.00
993 7 0.00
994 3 0.00
995 3 0.00
997 3 0.00
998 1 0.00
1000 7 0.00
1001 7 0.00
1002 3 0.00
1004 6 0.00
1005 12 0.00
1006 9 0.00
1007 17 0.00
1008 14 0.00
1009 27 0.01
1010 26 0.01
1011 230 0.04
1012 84 0.02
1013 105 0.02
1014 73 0.01
1016 48 0.01
1017 90 0.02
1018 5 0.00
1020 11 0.00
1021 12 0.00
1022 4 0.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (969 bp):
GAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTTTTATAGCATAATTTGAAATCGTGCAAAT
GGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGACATTTTGAGCTCCAAAATCGTCCATA
ACTTGCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCA
AGTTTAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATT
TCGTACTTCAAAGCTCGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAACA
TTAAGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCAGGCA
CCAATAACGATTTCGAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCA
TGAATCCCCTAAAAAATGCATCTAGAGCAGAAACGCAATGAAAAATTAAAATCATGCAAACGGTT
TTTATAGCATAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTT
TGACATTTTGAGCTCCAAAATCATCCATAACTTGCACTTTAACACTTGAAAAATTAAAATCAATG
CAAGTTATCATGTTTCTCTATTTGAGCAAGTTTAAAACATTGGACTCAAGATATTCAAACCATTT
CCAATTAAAAACTTACTAAAACAATATTTCATACTTCAAAGTTGGCTCTAGCAGAAATGGTTTTC
AAAGCAAAGCATAAAGCTACAAAAAACATTAAGCTTTTGAGCTTGCGAATAATATATAAAAACAA
GTTAGCACACAGTTAATCACATCAGGCACCAATAACGATTTCGCAAATAATATCCAAATATCAGC
AGCATCCCACAAATTCCTTAGAGCATTCATGAATTCCCCTAAAAAATGCATCTAGAGAA
Found at i:29725 original size:487 final size:485
Alignment explanation
Indices: 28442--30909 Score: 3671
Period size: 487 Copynumber: 5.1 Consensus size: 485
28432 ACAAAATTTG
*
28442 GCACTTTAACAC--TGAAAAATTAAAATCAAAGCAAGTTATCATGTTTCTCTATTTGAGCAAGTT
1 GCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTT
*
28505 TAAAACATTGGACTCAAGATATTCATACCATTTCCAATTAAAAACTTACTAAAACAATATTTCAT
66 TAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATTTCAT
* * *
28570 ACTTCAAAACTTGGCTCTAGCAGAAAAGGTTTTCAAAGCAAAGCATAAAGGTACAAAAAACATTA
131 ACTTCAAAGCTTGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAACATTA
*
28635 AGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACATAGTTAATCACATCAGGCACTA
196 AGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCAC--AGTTAATCACATCAGGCACCA
* * *
28700 ATAACGATTTCCGAAATAATATCCAAATATCAGCACCATCCCACAATTTCCTTAGAGCATTCATG
259 ATAACGATTTCAGAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATG
* * ** *
28765 AAT-CCCCTAAAAAATGCATCGAGAACAGAAATACAACAAAAAATTAAAATCGTGCAAACGGTTT
324 AATCCCCCTAAAAAATGCATCTAGAGCAGAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTT
* *
28829 TTATAGCATAATTTGAAATTGTGCAAATAGTTTTCAAGCCCATAATCGCTCAAAAACAAAATTTT
389 TTATAGCATAATTTGAAATTGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTT
28894 GACATTTTGAGCTCCAAAATCGTCCATAACTT
454 GACATTTTGAGCTCCAAAATCGTCCATAACTT
* * *
28926 GCACTTTAATACTGTGAAAACTTAAAAATCAATGCAAGTTATCATGTTGCTCTATTTGAGCAAGT
1 GCACTTTAACACTGTGAAAAATT-AAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCAAG-
*
28991 TTTAAAACATTTGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATTTC
64 TTTAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATTTC
* * ** * * *
29056 GTACTTCGAAGCTCAGCCCTAGCAGAAATGGTTTTGAAAGCAAGGCATAAAGCTACAAAAAACAT
129 ATACTTCAAAGCTTGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAACAT
29121 TAAGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACATAGTTAATCACATCAGGCAC
194 TAAGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCAC--AGTTAATCACATCAGGCAC
* * *
29186 CAATAACGATTTCGGAAATAATATCCAAATATCAGTAGCATCTCACAAATTCCTTAGAGCATTCA
257 CAATAACGATTTCAGAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCA
* * * * * * *
29251 TGAATCCCCCTTAAAAAGGCATCTAGAGCAGAAACGCAATGAAAAATTGAAATCATGCAAATGGG
322 TGAATCCCCCTAAAAAATGCATCTAGAGCAGAAACGCAACGAAAAATTAAAATCGTGCAAACGGT
* * * *
29316 TTTAATAGCAAAATTTGAAATTGTGCAAATGGTTTTCGTGCCCTTAATCGCTCAAAAACAAAATT
387 TTTTATAGCATAATTTGAAATTGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATT
29381 TTGACATTTTGAGCTCCAAAATCGTCCATAACTT
452 TTGACATTTTGAGCTCCAAAATCGTCCATAACTT
* *
29415 GCACTTTAACACTGTGAAAAATTAAAATTAATGCAAGTTATCATGTTTCTCTATTTGAACAAGTT
1 GCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTT
* * * *
29480 TAAAACATTGGACTCAAGAAATTCAAACCATTTCCAATTGAAAACTTACTAAAACAATTTTTTAT
66 TAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATTTCAT
*
29545 ACTTCAAAGCTAGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAAACATT
131 ACTTCAAAGCTTGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTAC-AAAAAACATT
* *
29610 AAGCTTTTGAGCTTACGAATAATATATAAAAACAAGTTAGCACAGTTAATCACATCAGGCACCAA
195 AAGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACAGTTAATCACATCAGGCACCAA
* * * * * *
29675 TAACAATTTCAAGAAATAATATCCAAATATCAGCAGCTTCCCAGAAATTCCCTAAAGCGTTCATG
260 TAACGATTTC-AGAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATG
* *
29740 AATCCCCCTAAAAAATGCATCTAGAGCAGAAACGCAACAAAAAATTAAAATCATGCAAACGGTTT
324 AATCCCCCTAAAAAATGCATCTAGAGCAGAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTT
*** * ** * *
29805 TTATAGCATAATTTGAAATTGTGTGGATGGTTTTCATGCACATAATTACTCAAAAACAAAGTATT
389 TTATAGCATAATTTGAAATTGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTT
*
29870 GACATTTTGAGCTCCAAAATCATCCA-AACTT
454 GACATTTTGAGCTCCAAAATCGTCCATAACTT
29901 GCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTT
1 GCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTT
* * *
29966 TAAAATATTGGACTCAAGATATTCAAATCATTTCCAATTAAAAACTTACTAAAACAATATTTCGT
66 TAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATTTCAT
* * *
30031 ACTTCAAAGCTTCGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATATAGCTAAAAAAAACATTA
131 ACTTCAAAGCTTGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAACATTA
* * * * * *
30096 GGCTTTTGAGCCTGCAAATAATATATAAAAACAAGTTAGCATACGGCTAATCATATTAGGCACCA
196 AGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGC--ACAGTTAATCACATCAGGCACCA
* * *
30161 ATAACGATTTCAGAAATAATATCTAAATATCAGCAGCATCCCACAAATTCCTTAGGGCAGTCATG
259 ATAACGATTTCAGAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATG
*
30226 AATCCCCATAAAAAAATGCATCTAGAGCAGAAACGCAACGAAAAATTAAAATCGTGCAAACGGTT
324 AATCCCCCT-AAAAAATGCATCTAGAGCAGAAACGCAACGAAAAATTAAAATCGTGCAAACGGTT
* ** *
30291 TTTATAGCATAGTTTGAAATCATGCAAATGGTTTTCGTGCCC-TAATCGCTCAAAAACAAAA-TT
388 TTTATAGCATAATTTGAAATTGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTT
* * * * * *
30354 TGGCATTTTGTGCTCCAACATTGCCCATAACAT
453 TGACATTTTGAGCTCCAAAATCGTCCATAACTT
*
30387 GCACTTTAACAC--TGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCTAGTT
1 GCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTT
*
30450 TAAAACATTGGACTCATGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATTTCAT
66 TAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATTTCAT
* * * *
30515 ACTTCAAAACTTGGCTCTAGCGGAAAAGGTTTTCAAAGCAAAGCATAAAGGTACAAAAAACATTA
131 ACTTCAAAGCTTGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAACATTA
* *
30580 AGCTTTTGAGCCTACGAATAATATATAAAAACAAGTTAGCACACAGTTAATCACATCGGGCACCA
196 AGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAG--CACAGTTAATCACATCAGGCACCA
* * *
30645 ATAACTATTTC-GAAAATAATATCCAAATATCAGCAGCATCCCACAAACTCCTTAAAGCATTCAT
259 ATAACGATTTCAG-AAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCAT
* * * * *
30709 GAATCCCCCTAAAAAATGCATCTAGAGCAGAAACGCAATGAAAAATAAAAATCGTGGAAATGATT
323 GAATCCCCCTAAAAAATGCATCTAGAGCAGAAACGCAACGAAAAATTAAAATCGTGCAAACGGTT
* * * * *
30774 TTTATAGCATAATTTGAAATCGTGCAAATGGTTTTCATGTCCATAATC-ATGC-GAAAGAAAATT
388 TTTATAGCATAATTTGAAATTGTGCAAATGGTTTTCATGCCCATAATCGCT-CAAAAACAAAATT
* *
30837 TTAATATTTTGAGCTCCAAAATCGTCCATAACTT
452 TTGACATTTTGAGCTCCAAAATCGTCCATAACTT
*
30871 GCACTTTAGCACTGTGAAAAATTAAAATCAATGCAAGTT
1 GCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTT
30910 TAAAACATTG
Statistics
Matches: 1777, Mismatches: 188, Indels: 36
0.89 0.09 0.02
Matches are distributed among these distances:
483 97 0.05
484 343 0.19
485 69 0.04
486 327 0.18
487 445 0.25
488 335 0.19
489 161 0.09
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.28
Consensus pattern (485 bp):
GCACTTTAACACTGTGAAAAATTAAAATCAATGCAAGTTATCATGTTTCTCTATTTGAGCAAGTT
TAAAACATTGGACTCAAGATATTCAAACCATTTCCAATTAAAAACTTACTAAAACAATATTTCAT
ACTTCAAAGCTTGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACAAAAAACATTA
AGCTTTTGAGCCTGCGAATAATATATAAAAACAAGTTAGCACAGTTAATCACATCAGGCACCAAT
AACGATTTCAGAAATAATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGAGCATTCATGAA
TCCCCCTAAAAAATGCATCTAGAGCAGAAACGCAACGAAAAATTAAAATCGTGCAAACGGTTTTT
ATAGCATAATTTGAAATTGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTTGA
CATTTTGAGCTCCAAAATCGTCCATAACTT
Found at i:32566 original size:489 final size:487
Alignment explanation
Indices: 31634--33621 Score: 2121
Period size: 489 Copynumber: 4.1 Consensus size: 487
31624 AGATATTCAA
* * * *
31634 AATAACAATTTCT-CAAATGATATTCAAATATCGGCACCATCCCACAAAGTCCTTAGAGCATTCA
1 AATAACGATTT-TGCAAATGATATCCAAATATCAGCAGCATCCCACAAAGTCCTTAGAGCATTCA
* * * ** * *
31698 TGAATCCCCCTAAAAAATGCATCT-CGAGCAGAAATGCAATGCAAAATTAAAATCATGTAAACGG
65 TGAATCCCCCTAAAAAATGCATCTAC-AGCAGAAACGCAACGAAAAATTAAAATTGTGCAAACGA
* * * * * * * *
31762 TTTTTATATCACAACTTGAAAAACCTACAAACGTTTTTCATCCCCATAATTGATCAAAAACAAAA
129 TTTTTATATCACAATTTG-AAATCGTGCAAATG-TTTTCATGCCCATAATCGCTCAAAAACAAAA
* * *
31827 TATTTAACATTTTAAGCACCAAAATCCTCCATAAC-T--AA-ATT---A-TGTGAAAAATTAAAA
192 T-TTTGACATTTTAAGCTCCAAAATCCTCCATAACTTGCAAGTTTAACACTGTGAAAAATTAAAA
* * * *
31884 GCAATGCAATTTATCATGTTTCTCTGTTTGAGCAGGTTTAAAGCATTGGATTCAAGATATTCAAA
256 GCAATGCAAGTTATCATGTTTCTCAGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAA
* * * * * * *
31949 CTCATTTCCATTTAAAAACTTGCTAAAACAATCTTTCACAATTCAAAGCTTAGCTATGGTAGAAA
321 CTCATTTCCAATTAAAAACTTGCTAAAACAATATTTCACACTTCAAAGCTCAGCTCTAGCAGAAA
* * * * * * * * *
32014 TTGTTTTCAAAGCAAAACATAAAGCTAGGAAAGATATTAAGATTTTGATCCTATGAATAATATAT
386 TGGTTTTCAAAGCAAAGCATAAAGCTA-GAAAAACATTAAGCTTTTGAGCTTGTGCATAATATAT
* * **
32079 AAAAACAAGTTAGCACAGAGTCAATCACATACGGCACC
450 AAAAACAAGTTAGCACACAGTTAATCACATACGGTGCC
*** * *
32117 AATAACGATTTCT-CAAATGATATCCAAATATCATTGGCATCACACAAATTCCTTAGAGCATTCA
1 AATAACGATTT-TGCAAATGATATCCAAATATCAGCAGCATCCCACAAAGTCCTTAGAGCATTCA
* *
32181 TGAATCCCCCTAAAAAATGCTTCTACAACAGAAACGCAACGAAAAATTAAAATTGTGCAAACGAT
65 TGAATCCCCCTAAAAAATGCATCTACAGCAGAAACGCAACGAAAAATTAAAATTGTGCAAACGAT
* * * *
32246 TTTTATATCACAATTTGAAAATTGTGCAAATTGTTTTCATGCCCACAATCGCTCAAAAACAATAC
130 TTTTATATCACAATTTG-AAATCGTGCAAA-TGTTTTCATGCCCATAATCGCTCAAAAACAAAAT
* ** * * * *
32311 TGTGACATTTTGGGCTCTAAAATCCTCCACAACATGC-CGTTTAACACTGTGAAAAATTAAAAGC
193 TTTGACATTTTAAGCTCCAAAATCCTCCATAACTTGCAAGTTTAACACTGTGAAAAATTAAAAGC
* * * *
32375 AATGCAAGTTATCATGTTTCTCAGTTTGAGAAAATTTAAAACCTTGGATTCTAGATATTCAAACT
258 AATGCAAGTTATCATGTTTCTCAGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACT
* * *
32440 CATTTCCAATTAAAAACTTGCTGAAACAATATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATG
323 CATTTCCAATTAAAAACTTGCTAAAACAATATTTCACACTTCAAAGCTCAGCTCTAGCAGAAATG
* * * *
32505 CTTTTCAAAGCAAAGCATGAAGCTATGTAAAACATTAAGCTTTTGAGCTTGTGCCTAATATATAA
388 GTTTTCAAAGCAAAGCATAAAGCTA-GAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAA
*
32570 AAACAAGTTAGCACACAGTTAATAACATTA-GGTGCC
452 AAACAAGTTAGCACACAGTTAATCACA-TACGGTGCC
* * * * * *
32606 AATAATGATTTTGCAAATGATATCCAAATATCAGCAGCATCCCTCAAATTCGTTAGTGCATTAAT
1 AATAACGATTTTGCAAATGATATCCAAATATCAGCAGCATCCCACAAAGTCCTTAGAGCATTCAT
* * * * * * *
32671 GAATCCCCCTAAAAAATGCGTCTAGAGCAGAAACGCAATGAAAAATT-AAGTGGCGCAAA-TAGT
66 GAATCCCCCTAAAAAATGCATCTACAGCAGAAACGCAACGAAAAATTAAAATTGTGCAAACGA-T
* * * *
32734 TTTTATATAACAATTTGAAATTGTGCAAATTGTTTCCATGGCCATAATCGCTCAAAAACAAAATT
130 TTTTATATCACAATTTGAAATCGTGCAAA-TGTTTTCATGCCCATAATCGCTCAAAAACAAAATT
* *
32799 TTGACATTTT--G-----AAATCCTCCATAACTTGCAAG-TTAACATTGTGAAAAATTAAAAGAA
194 TTGACATTTTAAGCTCCAAAATCCTCCATAACTTGCAAGTTTAACACTGTGAAAAATTAAAAGCA
* *
32856 ATCCAAGTTATCATGTTTCT-ATGTTTGAGCAAGTTTAAAACATTTGATTCAAGATATTCAAACT
259 ATGCAAGTTATCATGTTTCTCA-GTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACT
* * * *
32920 CATTTCC-ATCTAAAAAGTTGCTAAAACAATATTTCATACTTCAAAACTCGGCTCTAGCAGAAAT
323 CATTTCCAAT-TAAAAACTTGCTAAAACAATATTTCACACTTCAAAGCTCAGCTCTAGCAGAAAT
* * * *
32984 GGTTTTCAAAGCAATGGATAAAGCTAAAAAAAACATTAAGCTTTTGAGCTTGTGCATAATATGTA
387 GGTTTTCAAAGCAAAGCATAAAGCT-AGAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATA
33049 AAAACAAGTTAGTTAGCACACAGTTAATCAC--ACGATGTGCC
451 AAAAC-A---AGTTAGCACACAGTTAATCACATACG--GTGCC
* *
33090 AATAACGATTTTGCAAATAATATCCAAATATCAGTAGCATCCCACAAAGTCCTTAGAGCATTCAT
1 AATAACGATTTTGCAAATGATATCCAAATATCAGCAGCATCCCACAAAGTCCTTAGAGCATTCAT
** * * * * ** * *
33155 GAATAGCCCTAAAAAATGCATCTAGAGCAGAAATGCAACGAATAATTAAAACTGTGTTAATGGTT
66 GAATCCCCCTAAAAAATGCATCTACAGCAGAAACGCAACGAAAAATTAAAATTGTGCAAACGATT
* *
33220 TTTATGTTACAATTTGAAATCGTGCAAATGTTTTCCATGCCCATAATCGCTCAAAAACAAAATTT
131 TTTATATCACAATTTGAAATCGTGCAAATGTTTT-CATGCCCATAATCGCTCAAAAACAAAATTT
* ** * * * *
33285 TGATATTTTAAGCTCCAAAATTATCCATAACTTGC-ACTGTAACACTGTAAAAAATTAAAACCAA
195 TGACATTTTAAGCTCCAAAATCCTCCATAACTTGCAAGTTTAACACTGTGAAAAATTAAAAGCAA
* *
33349 TGCAATTTATCATGTTT-TGCTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTC
260 TGCAAGTTATCATGTTTCT-CAGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTC
** * *
33413 ATTTCCCCTTAAAAACACT-CTAAAACAATATTTCACACTTCAAAGCTCAGCTCTAGCAGAAAAG
324 ATTTCCAATTAAAAAC-TTGCTAAAACAATATTTCACACTTCAAAGCTCAGCTCTAGCAGAAATG
* * *
33477 GTTTT----G-AAAGC---AA---AG-----CATAAAGCTTTTGAGCTTATGCGTAATATATAAA
388 GTTTTCAAAGCAAAGCATAAAGCTAGAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAA
*
33526 AACAAGTTAGCA-ACAGTTAATCAAAT-CAGGTGCC
453 AACAAGTTAGCACACAGTTAATCACATAC-GGTGCC
* * * * * *
33560 AATAACAATTTTGCAAATAATATCCAAATATCAGCAGCGTCACACAAATTCGTTA-AGCATTC
1 AATAACGATTTTGCAAATGATATCCAAATATCAGCAGCATCCCACAAAGTCCTTAGAGCATTC
33622 TAGAGCAAAA
Statistics
Matches: 1279, Mismatches: 184, Indels: 98
0.82 0.12 0.06
Matches are distributed among these distances:
469 7 0.01
470 65 0.05
471 9 0.01
472 1 0.00
474 1 0.00
475 33 0.03
479 3 0.00
480 214 0.17
481 4 0.00
482 27 0.02
483 161 0.13
484 132 0.10
485 73 0.06
487 57 0.04
488 29 0.02
489 305 0.24
490 2 0.00
491 2 0.00
492 152 0.12
493 2 0.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (487 bp):
AATAACGATTTTGCAAATGATATCCAAATATCAGCAGCATCCCACAAAGTCCTTAGAGCATTCAT
GAATCCCCCTAAAAAATGCATCTACAGCAGAAACGCAACGAAAAATTAAAATTGTGCAAACGATT
TTTATATCACAATTTGAAATCGTGCAAATGTTTTCATGCCCATAATCGCTCAAAAACAAAATTTT
GACATTTTAAGCTCCAAAATCCTCCATAACTTGCAAGTTTAACACTGTGAAAAATTAAAAGCAAT
GCAAGTTATCATGTTTCTCAGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCAT
TTCCAATTAAAAACTTGCTAAAACAATATTTCACACTTCAAAGCTCAGCTCTAGCAGAAATGGTT
TTCAAAGCAAAGCATAAAGCTAGAAAAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAAC
AAGTTAGCACACAGTTAATCACATACGGTGCC
Found at i:35612 original size:487 final size:486
Alignment explanation
Indices: 34188--38459 Score: 4717
Period size: 486 Copynumber: 8.9 Consensus size: 486
34178 CCAAATTTTG
* * * * * *
34188 ACTTGCACTTTAACATTATGAAAAATGAAAAGCAATGCAAGTTATAATGTTTCTCTATTTGAGTA
1 ACTTGCACTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
* * * *
34253 GGTTTAAAAACATTGGATTTAGGATATTCAAAC-CTATTTACATTTAAAAACA-TGCTAAAACAA
66 AGTTT-AAAACATTGGATTCAAGATATTCAAACTC-ATTTCCA-TTAAAAA-ATTGCTAAAACAA
* * * * *
34316 TATTTCACACTTCAAAGCTTGGCTCTAGTAG-AATTGTTTT---------TC--AAAGCTACGAA
127 TATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACGAA
* *
34369 AATACATTAAGCTTTTGAGCTTATGCATAATATATAAAAACAAGTTAGCACACAGTTAATCACAT
192 AA-ACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACTGTTAATCACAT
* * * * * *
34434 CAGACGGCAATAACGATTTTGGAAATGATATCCAAATATCAGCAGCATCCCACAAATTCCTTAGA
256 CAGGCGCCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGA
** * * * *
34499 GCATTCATGAATCCCACAAAAAAAAAGCGTCTAGAGTAGAAACGCAATGAAAAATTAAAATCATG
321 GCATTCATGAATCCC-CCTAAAAAATGAGTCTAGAGCAGAAACGC-ATCAAAAATTAAAATCATG
* * * * * *
34564 CAAACAGTTTTTATATCACAATTTGAAATCATACAAATGTTTTTCACGCCCATAATTGCTCAAAA
384 CAAACGGTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAA
*
34629 ACAAAATTTTGACATTTTAAGCTCCAAAATCCTCCATA
449 ACAAAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
* * *
34667 ACTTGCACTTTAAGATTGTGAAAAATTAAAAGCAATGCAAGTTATCATGTTTCTCTATTTGAGCA
1 ACTTGCACTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
* *
34732 AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTACATTTACAAACA-TGCTAAAACAATA
66 AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCA-TTA-AAAAATTGCTAAAACAATA
* * * * * * * *
34796 TTTTACACTT-AAAGGTCGGCTTTAGCAGAATTGTTTTTCAAAGCAAAGCATCAAGCTACGAAAG
129 TTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACGAAAA
** * * * *
34860 ACATTAAGCTTTTGAGCTAATGCA-AATATATAAAAACAAGTTGGCACACAGTTAATCACGTTAG
194 ACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACTGTTAATCACATCAG
* * * * *** * *
34924 GTGCCAATAACAATTTCTCAAATGATATCTAAATATAAGCCTTATCCCACAAATTCCATAGAGCA
259 GCGCCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGCA
* * * * * * * *
34989 TCCATGTATCCCCCT-AAAACTGTGTTTAGAGCAGAAATGCAGCGAAAAATTAAAATCTTGCAAA
324 TTCATGAATCCCCCTAAAAAATGAGTCTAGAGCAGAAACGCATC-AAAAATTAAAATCATGCAAA
* * * * *
35053 CGGTTTTTATATCATAATTTGAAATCCTGCAAACGGTTTTCATGCACGTAATCGCTCAAAAACAA
388 CGGTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAA
*
35118 AATTTTGACATTTTGAGCTCGAAAATCCTCCATA
453 AATTTTGACATTTTGAGCTCCAAAATCCTCCATA
* * * * *
35152 ACTTGCACTCTAACATTGTGAAAAATGAAAACCAATACAAGTTATCATGTATCTCTGCTTGAGCA
1 ACTTGCACTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
* *
35217 AGTTTAAAACATTGGATTCAAGATATTCAAGCACATTTCCGATTAAAAAATTGCTAAAACAATAT
66 AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCC-ATTAAAAAATTGCTAAAACAATAT
* ** *
35282 TTCATACTTCAAAGCTCGGCTCTAGCAGATATGGTTTTCAAAGCAAAGTGTAAAGCTACAAAAAA
130 TTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTAC-GAAAA
* *
35347 AAATTAAGCTTTTTGAGC-T-TGCATAATATATAAAAACAAGTTAGCATACTGTTAATCACATCA
194 ACATTAAGC-TTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACTGTTAATCACATCA
* * * * *
35410 AGTGCTAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAAGTCCTTACAGC
258 GGCGCCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGC
* * *
35475 GTTCATGAATCCTCCTAAAAAATGAAG-CTAGAGCAGAAACACATCAAAAATTAAAATCATGCAA
323 ATTCATGAATCCCCCTAAAAAATG-AGTCTAGAGCAGAAACGCATCAAAAATTAAAATCATGCAA
* * * *
35539 ATGGTTTTTATATTACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTGAAAAGCA
387 ACGGTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACA
* * * * *
35604 ATATTTTGATATTTCGGGCTCCAAAATCCTCCTTA
452 AAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
* * * * * * * *
35639 ACTTTCCCTTTAACA--CTGAAAATTTAAAACCATTGC-AG--GT-ATGTATT-TCTGTTTCAGG
1 ACTTGCACTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGT-TTCTCTGTTTGAGC
* * * * *
35697 GAGTTTAAAACATTCGTTTCAAGATATTCAAACTCATTTCCATTTAAAAAGTTGCTAAAAAAATA
65 AAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCA-TTAAAAAATTGCTAAAACAATA
* * * * *
35762 TTTCATACTTCGAAGCTTGGC-CTAGTAAAAATGGTTTTCAAAGCAAAGCGTAAAGCTAC-AAAA
129 TTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACGAAAA
* ** * ** * * ** *
35825 AAATTAAGCGCTTCAGCTTGTGTGTAATATGTAAAAACAAGTTAGCACATTGTTAATTGCATAAG
194 ACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACTGTTAATCACATCAG
* * * * *
35890 GCGCCAATAACAACTTCGCAAATGATATCCAAATAT--GCAACTTGACACAAATTGCTTAGAGCA
259 GCGCCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGCA
* * * * **
35953 TTCATGAATCCCCCTAAAAACTGCGTCTGGAGCAGAAACGCAGTGAAAAGCTAAAATCATGCAAA
324 TTCATGAATCCCCCTAAAAAATGAGTCTAGAGCAGAAACGCA-TCAAAAATTAAAATCATGCAAA
* * * *
36018 CGGTTTTTATATCACAATTTGAAATTGTGCAAATGGTTTTCATGCCCATAATTGCCCAAAAATAA
388 CGGTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAA
*
36083 AATTTTGACATTTTGGGCTCCAAAATCCT-C-T-
453 AATTTTGACATTTTGAGCTCCAAAATCCTCCATA
* * * * * *
36114 A--T-AAC-TTAACACTGTGAAAATTTAAAACCAATTCAAGTTATCATTTTTCTCTGCTTGAGCA
1 ACTTGCACTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
* * * * *
36175 AATTTAAAACATTGGATTTAAGATATTC-AA-T--TCT-AATTAAAAACTTGCGT-AAACAATAT
66 AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTAAAAAATTGC-TAAAACAATAT
* * * * * *
36234 TTAATACTTCAAAGATAGGCTCTAGCAGAAATGGTTTTCAAAGGAAAGCATAAAGCTATGAAGAA
130 TTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACGAAAAA
* * * * *
36299 CATTAAGCTTTTGAGCTTGTGTATAATATATAAAAACAAGTTGGGACACTATGAATCACATCAGG
195 CATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACTGTTAATCACATCAGG
* * * * **
36364 CACCAATAACAATTTCGCAAATGATATCCAAATATCAACAGCATCCCCCAAATTCCTTATTGCAT
260 CGCCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGCAT
* * * ***
36429 TCATGAATCCCCCTAAAAAATGTGTGTAGAGCAGAAACGCAACGAAAAATTAAAATCGCACAAAC
325 TCATGAATCCCCCTAAAAAATGAGTCTAGAGCAGAAACGCATC-AAAAATTAAAATCATGCAAAC
* * * * * *
36494 GGTTTTTATATCACAAATTGAAATCGTGTAAGTTG-TTTCTTGCCCTTAATCGCTCAAAAACAAA
389 GGTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAA
36558 ATTTTGACATTTTGAGCTCCAAAA---T-C---
454 ATTTTGACATTTTGAGCTCCAAAATCCTCCATA
* *
36584 -C-TG-A--ATAAC--TGTGAAAAATTAAAACCAATGC-AG-------GTTTCCCTGTTTGAGCA
1 ACTTGCACTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
* *
36634 AGTTTAAAACATTGGATTCAAGAT-GTCAAACTCATTTCCATTTAAAAAGTTGCTAAAACAATAT
66 AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCA-TTAAAAAATTGCTAAAACAATAT
* * * *
36698 TTCATACTGCAAAGCTCGGCTCTAGCAGTAAA-GGTTTTCAAAGCAAAGC-T-TAGCTATGAAAG
130 TTCATACTTCAAAGCTCGGCTCTAGCAG-AAATGGTTTTCAAAGCAAAGCATAAAGCTACGAAAA
* * * ** *
36760 ACATTAAGCTTTTGAGCTTGTGCATAATATATTAAAACAAGTTTGCATAGAGTTAATCACATGAG
194 ACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACTGTTAATCACATCAG
* * * * * *
36825 GCGCCAATAACGATTTTGGAAATGATATCCAAATATCTGCAGCATCACAAAAATTCCTTAAAGCA
259 GCGCCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGCA
* * * *
36890 TTCATGAATCCCCCTAAAAAATGGGTTTAGAGCAGAAACGCAATGAAAAATTAAAATCATGCGAA
324 TTCATGAATCCCCCTAAAAAATGAGTCTAGAGCAGAAACGC-ATCAAAAATTAAAATCATGCAAA
* * * *
36955 -GAGTTTTTATATCACAAATTGAAATCGTGCATATGGTTTTGATGCCCATAATTGCTCAAAAACA
388 CG-GTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACA
* * * *
37019 AAATTTTGATATTTTGGGCTGCAAATTCCTCCATA
452 AAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
* * *
37054 ACTTGCACTTTAACACTGTGAAAAATTAAAACCAATGCAAGTTATAATGTTTCTCCGTTTGAGCA
1 ACTTGCACTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
* *
37119 AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCAATTAAATACTTGCTAAAACAATAT
66 AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCC-ATTAAAAAATTGCTAAAACAATAT
* * *
37184 TTCATACTTCAAAGCTTGGCTCTAGCAGAAATTGTTTTCAAAGCAAAGCGTAAAGCTACGAAAAA
130 TTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACGAAAAA
*
37249 -ACTAAGCTTTTGAGCTTGTGCATAATATAT-AAAACAAGTTAGCACA-TAGTTAATCACATCAG
195 CATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACT-GTTAATCACATCAG
* * *
37311 GCACCAATAACGATTTTGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGCA
259 GCGCCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGCA
* * * * ***
37376 TTCATGAATCTCCCTAAAAAATGCGTCCAAAGCAGAAACGCAAT-AGAAAATTAAAATTGCGCAA
324 TTCATGAATCCCCCTAAAAAATGAGTCTAGAGCAGAAACGC-ATCA-AAAATTAAAATCATGCAA
* * * * * *
37440 ACGGTTTTTATGTCATAATTTGAAATCATGTAAATGGTTTTAATGCCAATAATCGCTCAAAAACA
387 ACGGTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACA
37505 AAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
452 AAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
* ** ** *
37540 ACTTGCACTTTAACACTGTGAAATGTTTTAATGCCAATGCAAGTTATCATGTTTCTCTATTTGAG
1 ACTTGCACTTTAACATTGTGAAA--AATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAG
** * * * **
37605 CATCTTTAAAGCATTGGATTCAAGATATTCAAAATCATTTCCGCTTAAAAAACTTGCTAGGACAA
64 CAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCC-ATTAAAAAA-TTGCTAAAACAA
** * * * *
37670 TATTTCATACTTCAAAAATCAGCTCTAGCAGAAATGGTTTTCAAAGCAAATCATAAAGCTGCAAA
127 TATTTCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACGAA
37735 AAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACA-TAGTTAATCACAT
192 AAACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACT-GTTAATCACAT
* * * * * *
37799 CAGGTGCCAATAACAATTTCACAAATGATATCCAAATATGAACAACATCCCACAAATTCCTTAGA
256 CAGGCGCCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGA
* * * * * *
37864 GCATTCATGAATCCACCTAAAAACTGCGTCTAGAGCAGAAATGCAACGAAAAATTAAAATCAAGC
321 GCATTCATGAATCCCCCTAAAAAATGAGTCTAGAGCAGAAACGCATC-AAAAATTAAAATCATGC
* * * * * *
37929 AAACGGTTTTTATATCATAATTTGAAGTCATCCAAATGGTTTTCTTGCCCATAATCACTCAAAAA
385 AAACGGTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAA
*
37994 CAAAATTTTGACATTTTGAGCTCCAAAATCCTCCACA
450 CAAAATTTTGACATTTTGAGCTCCAAAATCCTCCATA
* * * ** *
38031 ACTTGCACTGTAACATTGTGAAAAATTAAAACCAATCCAAGTTATCATGTTTATCTGCATGCGCA
1 ACTTGCACTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
* ** * * * *
38096 AGTCTAAAACATTTAATTCAAGATATTCAAACTCATTTCCTTTTAAAAACTTGCTAAAGCAAAAT
66 AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCC-ATTAAAAAATTGCTAAAACAATAT
* * ** * * * *
38161 TTCATAGTTCAAAGTTTTGCTCCTTGCAGAAATGGTTTCCAAAGCAAAGCATAACGCTATGAAAA
130 TTCATACTTCAAAGCTCGGCT-CTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACGAAAA
* * * * * *
38226 ACATTAAGCTTTTGAGCTTGTGCTTAATATATGAAAACAAGTTAGGAAACAGGTAATCACATCAG
194 ACATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACTGTTAATCACATCAG
* * *
38291 GCGCCAATAACGATTTCTCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCGTAGAGCA
259 GCGCCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGCA
* * * * *
38356 TTCATGAATCCCCCTAAAAAATGCA-TCTAGAGCAGGAATGTAACGAAAAATTAAAATCGTGCAA
324 TTCATGAATCCCCCTAAAAAATG-AGTCTAGAGCAGAAACGCATC-AAAAATTAAAATCATGCAA
* * *
38420 A-TGTTTTTATATCACAATTTGAAATTGTGCAAACGGTTTT
387 ACGGTTTTTATATCACAATTTGAAATCGTGCAAATGGTTTT
38460 TATATCATAA
Statistics
Matches: 3198, Mismatches: 500, Indels: 181
0.82 0.13 0.05
Matches are distributed among these distances:
458 2 0.00
459 38 0.01
460 1 0.00
461 1 0.00
462 205 0.06
463 49 0.02
464 60 0.02
465 3 0.00
466 3 0.00
467 21 0.01
469 4 0.00
470 2 0.00
471 44 0.01
472 38 0.01
473 110 0.03
474 49 0.02
475 108 0.03
476 7 0.00
477 132 0.04
478 183 0.06
479 137 0.04
480 35 0.01
481 87 0.03
482 2 0.00
484 7 0.00
485 302 0.09
486 372 0.12
487 357 0.11
488 197 0.06
489 361 0.11
490 30 0.01
491 250 0.08
492 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30
Consensus pattern (486 bp):
ACTTGCACTTTAACATTGTGAAAAATTAAAACCAATGCAAGTTATCATGTTTCTCTGTTTGAGCA
AGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTAAAAAATTGCTAAAACAATATT
TCATACTTCAAAGCTCGGCTCTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTACGAAAAAC
ATTAAGCTTTTGAGCTTGTGCATAATATATAAAAACAAGTTAGCACACTGTTAATCACATCAGGC
GCCAATAACAATTTCGCAAATGATATCCAAATATCAGCAGCATCACACAAATTCCTTAGAGCATT
CATGAATCCCCCTAAAAAATGAGTCTAGAGCAGAAACGCATCAAAAATTAAAATCATGCAAACGG
TTTTTATATCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATCGCTCAAAAACAAAAT
TTTGACATTTTGAGCTCCAAAATCCTCCATA
Found at i:38520 original size:34 final size:33
Alignment explanation
Indices: 38409--38526 Score: 175
Period size: 33 Copynumber: 3.6 Consensus size: 33
38399 CGAAAAATTA
*
38409 AAATCGTGCAAAT-GTTTTTATATCACAATTTG
1 AAATCGTGCAAATGGTTTTTATATCATAATTTG
* *
38441 AAATTGTGCAAACGGTTTTTATATCATAATTTG
1 AAATCGTGCAAATGGTTTTTATATCATAATTTG
* *
38474 AAATTGTACAAATGGTTTTTATATCATAATTTGG
1 AAATCGTGCAAATGGTTTTTATATCATAATTT-G
38508 AAATCGTGCAAATGGTTTT
1 AAATCGTGCAAATGGTTTT
38527 CATGCCCATA
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
32 11 0.14
33 48 0.62
34 18 0.23
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (33 bp):
AAATCGTGCAAATGGTTTTTATATCATAATTTG
Found at i:40966 original size:438 final size:444
Alignment explanation
Indices: 40144--41471 Score: 1488
Period size: 438 Copynumber: 2.9 Consensus size: 444
40134 TATCGCAATT
* * * * *
40144 TCAAATCGTGCAAATAGTTTTCGTGCCCATAATTGCTAAAAAATAAAATTTTGACATTTTGAGT-
1 TCAAATTGTGCAAATGGTTTTCATGCCCATAA-TGCTCAAAAACAAAATTTTGACATTTTGA-TC
* * *
40208 TCC-ATATCCTCCATAACA-A-TGAAAAATTGAAAACAATGCAAGTTATCACCTTTCTC--TTTC
64 TCCAAAAT-CTCCATAACACAGTGAAAAAATAAAAACAATGCAAGTTATCACCTTTCTCTGTTTC
** *
40268 AGCAAGTTTAAAACATTGGATTCAAGATATTCAAACACATTTCCGGTTAAAAACTTGCTCAAACA
128 AGCAAGTTTAAAACATTGGATTCAAGATATTCAAA-ACATTTCCATTTAAAAACTTGCTAAAACA
* *
40333 ATATTTAATACTTCAAACCATGGCTTTAGGAAAAATGGTTTTCAAAGCAAAGCATAAAGCTTCAA
192 ATATTTAATACTTCAAA-C---GCTCTAGGAGAAATGGTTTTCAAAGCAAAGCATAAAGCTTCAA
* * * * * * *
40398 ACATCATTAAGCA-TTTAAGCTTGTGCATGGTACACAAAAACAAGTTAGCAAACAGTTAATCACA
253 AAAACATTAAG-ATTTTGAGCTTGTGCATAGTATATAAAAACAAGTTAGCACACAGTTAATCACA
* * * **
40462 TAAGGCGCCAATAACAATTTCGTAAATGGTATCCAAATATAAGCAGCATCTCACAAATTCCTTAG
317 TCAGGCGCCAATAACGATTTCGCAAATGGTATCCAAATATCGGCAGCATCTCACAAATTCCTTAG
* *
40527 AGCATTCATGAATACCCCTAAAAAATGCGTCTAGAGCAGAAATG-C-AA-TG-A-AAA-A-T-
382 AGCATTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAACGACAAATTGAACAAACATTA
* * *
40582 TGAAATTGTGCAAATGGTTTTCATGCCCATAATCGCTCTAAAACAAAATTTTGATATTTTGATCT
1 TCAAATTGTGCAAATGGTTTTCATGCCCATAAT-GCTCAAAAACAAAATTTTGACATTTTGATCT
* * * *
40647 CCAAAATCGTCCATAACACAGT-ATAAAAGTAAAAACAGTGCAAGTTATCACGTTTCTCTGTTTG
65 CCAAAATC-TCCATAACACAGTGA-AAAAATAAAAACAATGCAAGTTATCACCTTTCTCTGTTTC
40711 AGCAAGTTTAAAACATTGGATTCAAGATATTCAAAATCATTTCCATTTAAAAACTTGCTAAAACA
128 AGCAAGTTTAAAACATTGGATTCAAGATATTCAAAA-CATTTCCATTTAAAAACTTGCTAAAACA
*
40776 ATATTTAATACTTCAAA-GCTCTAGCG-GAAATGGTTTTCAAAGAAAAGCATAAAGCTTCAAAAA
192 ATATTTAATACTTCAAACGCTCTAG-GAGAAATGGTTTTCAAAGCAAAGCATAAAGCTTCAAAAA
* * *
40839 CCATTAAGATTTTGAGCTTGTGCATAGTATATAAATACAAGTTAGCACACTGTTAATCACATCAG
256 ACATTAAGATTTTGAGCTTGTGCATAGTATATAAAAACAAGTTAGCACACAGTTAATCACATCAG
* * * *
40904 GGGCCAATAACGATTTCGCAAAAGGTATCCAAATATCGGCAGCATCCCATAAATTCCTTAGAGCA
321 GCGCCAATAACGATTTCGCAAATGGTATCCAAATATCGGCAGCATCTCACAAATTCCTTAGAGCA
* *
40969 TTCATGAATCCCCCTAAAAAATGAGTCTAGAGTAGAAACGCAACGAAAAATTGAATTCACGCAAA
386 TTCATGAATCCCCCTAAAAAATGCGTCTAGAGCAGAAACG--AC---AAATTG-A---A--CAAA
41034 CAGTTTTTA
440 CA----TTA
*
41043 TCACAATTTGAAATCGTGCAAATGGTTTTCATGCCCATAATGTCTCAAAAACAAAATTTTGACAA
1 TCA-AA--T----T-GTGCAAATGGTTTTCATGCCCATAATG-CTCAAAAACAAAATTTTGACAT
* ** * * * * *
41108 TTTGAGCTAAAAAATACTCCATAATACTGTGAAAAAATAAAACCAATGCAAGATATCACTTTTCT
57 TTTGATCTCCAAAAT-CTCCATAACACAGTGAAAAAATAAAAACAATGCAAGTTATCACCTTTCT
* * *
41173 TTGTTTCAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACCCATTTCCATTTAAAAACTTAC
121 CTGTTTCAGCAAGTTTAAAACATTGGATTCAAGATATTCAAA-ACATTTCCATTTAAAAACTTGC
** *
41238 TAAAACAATATTTCGTACTTCAAAGCTCGACTCTAGGAGAAATGGTTTTTTAAAAGCAAAGCATA
185 TAAAACAATATTTAATACTTCAAA---CG-CTCTAGGAGAAATGG--TTTTCAAAGCAAAGCATA
* *
41303 AAGCTTCAAAAAACATTAAGCTTTTGAGCTTGTGCATAGTATATAAAAACAAGTTACCACACAGT
244 AAGCTTCAAAAAACATTAAGATTTTGAGCTTGTGCATAGTATATAAAAACAAGTTAGCACACAGT
* * * * *
41368 TAATCACATC-GGACGCCAATAACGGTTTTGCAAATGATATCCAAATATCGACAGAATCTCACAA
309 TAATCACATCAGG-CGCCAATAACGATTTCGCAAATGGTATCCAAATATCGGCAGCATCTCACAA
* *
41432 ATTCCTTCGAGCATTCATGAATCCCCCAAAAAAATGCGTC
373 ATTCCTTAGAGCATTCATGAATCCCCCTAAAAAATGCGTC
41472 CTGAACAGAA
Statistics
Matches: 753, Mismatches: 81, Indels: 74
0.83 0.09 0.08
Matches are distributed among these distances:
437 3 0.00
438 243 0.32
439 13 0.02
440 2 0.00
441 32 0.04
442 1 0.00
443 80 0.11
445 2 0.00
446 2 0.00
451 1 0.00
454 3 0.00
455 1 0.00
460 1 0.00
461 2 0.00
462 2 0.00
464 1 0.00
468 2 0.00
469 178 0.24
470 2 0.00
473 2 0.00
474 13 0.02
475 2 0.00
476 165 0.22
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (444 bp):
TCAAATTGTGCAAATGGTTTTCATGCCCATAATGCTCAAAAACAAAATTTTGACATTTTGATCTC
CAAAATCTCCATAACACAGTGAAAAAATAAAAACAATGCAAGTTATCACCTTTCTCTGTTTCAGC
AAGTTTAAAACATTGGATTCAAGATATTCAAAACATTTCCATTTAAAAACTTGCTAAAACAATAT
TTAATACTTCAAACGCTCTAGGAGAAATGGTTTTCAAAGCAAAGCATAAAGCTTCAAAAAACATT
AAGATTTTGAGCTTGTGCATAGTATATAAAAACAAGTTAGCACACAGTTAATCACATCAGGCGCC
AATAACGATTTCGCAAATGGTATCCAAATATCGGCAGCATCTCACAAATTCCTTAGAGCATTCAT
GAATCCCCCTAAAAAATGCGTCTAGAGCAGAAACGACAAATTGAACAAACATTA
Found at i:41518 original size:476 final size:474
Alignment explanation
Indices: 40581--41797 Score: 1623
Period size: 476 Copynumber: 2.6 Consensus size: 474
40571 CAATGAAAAA
* * * *
40581 TTGAAATTGTGCAAATGGTTTTCATGCCCATAATCG-CTCTAAAACAAAATTTTGATATTTTGAT
1 TTGAAATCGTGCAAATGGTTTTCATGCCCATAAT-GTCTCAAAAACAAAATTTTGACATTTTGAG
* * * *
40645 CTCCAAAATCGTCCATAACACAGT-ATAAAAGTAAAAACAGTGCAAGTTATCACGTTTCTCTGTT
65 CTCCAAAATC-TCCATAATACAGTGA-AAAAGTAAAACCAATGCAAGTTATCACTTTTCTCTGTT
* * *
40709 TGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAAATCATTTCCATTTAAAAACTTGCTAAAA
128 TCAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACTTACTAAAA
* *
40774 CAATATTTAATACTTCAAA----GCTCTAGCG-GAAATGGTTTTCAAAGAAAAGCATAAAGCTTC
193 CAATATTTCATACTTCAAAGCTCGCTCTAG-GAGAAATGGTTTTCAAAGCAAAGCATAAAGCTTC
* * * *
40834 AAAAACCATTAAGATTTTGAGCTTGTGCATAGTATATAAATACAAGTTAGCACACTGTTAATCAC
257 AAAAAACATTAAGATTTTGAGCTTGTGCATAGTATATAAAAACAAGTTACCACACAGTTAATCAC
* * * * *
40899 ATCAGGGGCCAATAACGATTTCGCAAAAGGTATCCAAATATCGGCAGCATCCCATAAATTCCTTA
322 ATCAGGCGCCAATAACGATTTCGCAAAAGATATCCAAATATCGACAGAATCCCACAAATTCCTTA
* ** * * ** *
40964 GAGCATTCATGAATCCCCCTAAAAAATGAGTCTAGAGTAGAAACGCAACGAAAAATTGAATTCAC
387 GAGCATTCATGAATCCCCCAAAAAAATGAGTCTAGAACAGAAAAGCAACAAAAAATAAAAATCAC
41029 GCAAACAG-TTTT-TATCACAAT
452 GCAAACAGTTTTTATATCACAAT
*
41050 TTGAAATCGTGCAAATGGTTTTCATGCCCATAATGTCTCAAAAACAAAATTTTGACAATTTGAGC
1 TTGAAATCGTGCAAATGGTTTTCATGCCCATAATGTCTCAAAAACAAAATTTTGACATTTTGAGC
** * * * *
41115 TAAAAAATACTCCATAATACTGTGAAAAAATAAAACCAATGCAAGATATCACTTTTCTTTGTTTC
66 TCCAAAAT-CTCCATAATACAGTGAAAAAGTAAAACCAATGCAAGTTATCACTTTTCTCTGTTTC
*
41180 AGCAAGTTTAAAACATTGGATTCAAGATATTCAAACCCATTTCCATTTAAAAACTTACTAAAACA
130 AGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACTTACTAAAACA
* *
41245 ATATTTCGTACTTCAAAGCTCGACTCTAGGAGAAATGGTTTTTTAAAAGCAAAGCATAAAGCTTC
195 ATATTTCATACTTCAAAGCTCG-CTCTAGGAGAAATGG--TTTTCAAAGCAAAGCATAAAGCTTC
*
41310 AAAAAACATTAAGCTTTTGAGCTTGTGCATAGTATATAAAAACAAGTTACCACACAGTTAATCAC
257 AAAAAACATTAAGATTTTGAGCTTGTGCATAGTATATAAAAACAAGTTACCACACAGTTAATCAC
* * * *
41375 ATC-GGACGCCAATAACGGTTTTGCAAATGATATCCAAATATCGACAGAATCTCACAAATTCCTT
322 ATCAGG-CGCCAATAACGATTTCGCAAAAGATATCCAAATATCGACAGAATCCCACAAATTCCTT
* * *
41439 CGAGCATTCATGAATCCCCCAAAAAAATGCGTCCT-GAACAGAAAAGGAACAAAAAATAAAAATC
386 AGAGCATTCATGAATCCCCCAAAAAAATGAGT-CTAGAACAGAAAAGCAACAAAAAATAAAAATC
* *
41503 ATGCAAACGGTTTTTATATCACAAT
450 ACGCAAACAGTTTTTATATCACAAT
* * * *
41528 TTGAAATCATACAAATGGTTTTCATGTCCGTAAT-TGCTCAAAAACAAAATTTTGACATTTTGAG
1 TTGAAATCGTGCAAATGGTTTTCATGCCCATAATGT-CTCAAAAACAAAATTTTGACATTTTGAG
* * * * ** **
41592 CTCCAAAATCCTACACAATACCGTGAAAAAGTAAAACTAATGTTAGTTATCA-TGTTTCTCAATT
65 CTCCAAAAT-CTCCATAATACAGTGAAAAAGTAAAACCAATGCAAGTTATCACT-TTTCTCTGTT
* *
41656 TCAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAGAAACTTCCTAAAA
128 TCAGCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACTTACTAAAA
* *
41721 CAATATTTCATACTTCAAAGCTCGGCACTAGCAGAAATGGTTTTCAAAGCAAAGCATAAAGCTTC
193 CAATATTTCATACTTCAAAGCTC-GCTCTAGGAGAAATGGTTTTCAAAGCAAAGCATAAAGCTTC
41786 AAAAAACATTAA
257 AAAAAACATTAA
41798 TTAAGATTAT
Statistics
Matches: 654, Mismatches: 76, Indels: 29
0.86 0.10 0.04
Matches are distributed among these distances:
468 1 0.00
469 185 0.28
470 2 0.00
473 2 0.00
474 13 0.02
475 2 0.00
476 229 0.35
477 8 0.01
478 211 0.32
479 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.13, T:0.29
Consensus pattern (474 bp):
TTGAAATCGTGCAAATGGTTTTCATGCCCATAATGTCTCAAAAACAAAATTTTGACATTTTGAGC
TCCAAAATCTCCATAATACAGTGAAAAAGTAAAACCAATGCAAGTTATCACTTTTCTCTGTTTCA
GCAAGTTTAAAACATTGGATTCAAGATATTCAAACTCATTTCCATTTAAAAACTTACTAAAACAA
TATTTCATACTTCAAAGCTCGCTCTAGGAGAAATGGTTTTCAAAGCAAAGCATAAAGCTTCAAAA
AACATTAAGATTTTGAGCTTGTGCATAGTATATAAAAACAAGTTACCACACAGTTAATCACATCA
GGCGCCAATAACGATTTCGCAAAAGATATCCAAATATCGACAGAATCCCACAAATTCCTTAGAGC
ATTCATGAATCCCCCAAAAAAATGAGTCTAGAACAGAAAAGCAACAAAAAATAAAAATCACGCAA
ACAGTTTTTATATCACAAT
Found at i:42651 original size:180 final size:176
Alignment explanation
Indices: 42174--42703 Score: 536
Period size: 183 Copynumber: 2.9 Consensus size: 176
42164 TATTAGTAAC
* * *
42174 GATTTGAAATAAATAATTTGTTAAATAGTCATAACTATTTAATTGATTTGATAAATAGATTTATT
1 GATTTGAAATAAATAA-TTGTTAAATAGTCATAAATATTTAATTGGTTTGATAAATAAATTTA-T
* * * * * *
42239 TTTTAA-AT-TT-GTTATTAGTTTTCAAAATATTAATAGATTAGTATTACTTTATTCCGAACAAA
64 TTTTAATCTCTTAGTTATTAATTTTCAAAATATTAATAGATTAGTATTATTTTATTTCGAATAAG
* *
42301 CTTATATGAACA-AAAATATTTGTTTTATGACAAAACAAAAGGTCATAAT
129 C-TATATGAA-AGAAAATATTTGTTTTATGATAAAACAAAAAGTCATAAT
* * * * * *
42350 GATTTAAAATATATAATTGCTCAAATAGTCATAATTATTTGAATTGGTTAGGTAAACATAATTAT
1 GATTTGAAATAAATAATTG-TTAAATAGTCATAAATATTT-AATTGGTTTGAT-AA-ATAA--AT
* ** * *
42415 TT-TTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAGATTCA-TTTTATTTTATTTTG
60 TTATTTTT-AATCTCTTAGTTATTAATTTTCAAAATATTAATAGATT-AGTATTATTTTATTTCG
*
42478 AATAAGCTAGTATGAATTGAAAAT-TTTGTTTTATGATAAAACAAAAAGTCATAAT
123 AATAAGCTA-TATGAA-AGAAAATATTTGTTTTATGATAAAACAAAAAGTCATAAT
* * * * * *
42533 GTTTTGAAATACACAATTGTTATTATAGTCTTAAATATTTAAACTGGTTTGATAAATAAATTTAT
1 GATTTGAAATAAATAATTGTTA-AATAGTCATAAATATTT-AATTGGTTTGATAAATAAATTTAT
*
42598 TTTTAATTCTCTTAGTTATTAATTTTCAAAATATTATTAGATTAGTATTATTTTATTTCGAATAA
64 TTTTAA-TCTCTTAGTTATTAATTTTCAAAATATTAATAGATTAGTATTATTTTATTTCGAATAA
* * *
42663 GCTTTTATGAACAG-AAATAATTGTTTTATGATAGAACAAAA
128 GC-TATATGAA-AGAAAATATTTGTTTTATGATAAAACAAAA
42704 GGTTATAACA
Statistics
Matches: 289, Mismatches: 46, Indels: 34
0.78 0.12 0.09
Matches are distributed among these distances:
175 3 0.01
176 32 0.11
177 9 0.03
178 2 0.01
179 19 0.07
180 86 0.30
181 10 0.03
182 8 0.03
183 114 0.39
184 6 0.02
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.44
Consensus pattern (176 bp):
GATTTGAAATAAATAATTGTTAAATAGTCATAAATATTTAATTGGTTTGATAAATAAATTTATTT
TTAATCTCTTAGTTATTAATTTTCAAAATATTAATAGATTAGTATTATTTTATTTCGAATAAGCT
ATATGAAAGAAAATATTTGTTTTATGATAAAACAAAAAGTCATAAT
Found at i:42811 original size:24 final size:26
Alignment explanation
Indices: 42769--42842 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 26
42759 TAAATAATAT
*
42769 AAATAATAATTAATAATTAGTATTACA
1 AAATAATAA-TAATAATTAATATTACA
42796 AAATAATAA-AAT-ATTAATATTA-A
1 AAATAATAATAATAATTAATATTACA
* *
42819 AGTATAAATAATAATTATTAATAT
1 A-AAT-AATAATAATAATTAATAT
42843 ATTTTAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
23 2 0.05
24 11 0.27
25 8 0.20
26 3 0.07
27 17 0.41
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (26 bp):
AAATAATAATAATAATTAATATTACA
Found at i:42884 original size:15 final size:14
Alignment explanation
Indices: 42796--42895 Score: 57
Period size: 14 Copynumber: 7.1 Consensus size: 14
42786 TAGTATTACA
*
42796 AAATAATAAAATAT
1 AAATAATAAATTAT
* * *
42810 TAATATTAAAGTAT
1 AAATAATAAATTAT
42824 AAATAAT-AATTATT
1 AAATAATAAATTA-T
* *
42838 AATATATTTTAATT-T
1 AA-ATA-ATAAATTAT
42853 AAAT-ATATAA-T-T
1 AAATAATA-AATTAT
42865 AAATAAGTAAATTAT
1 AAATAA-TAAATTAT
*
42880 AAATAATAATTTAT
1 AAATAATAAATTAT
42894 AA
1 AA
42896 TTATTATTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 18
0.71 0.11 0.19
Matches are distributed among these distances:
12 7 0.10
13 9 0.13
14 33 0.49
15 13 0.19
16 1 0.01
17 4 0.06
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (14 bp):
AAATAATAAATTAT
Found at i:43088 original size:18 final size:18
Alignment explanation
Indices: 43065--43159 Score: 63
Period size: 18 Copynumber: 5.2 Consensus size: 18
43055 TATCCTTATA
43065 TATTATATATATAATAAT
1 TATTATATATATAATAAT
*
43083 TATTATATATAATATTTGAAT
1 TATTATATAT-ATA-AT-AAT
* *
43104 T-TAATAT-TATATTAAT
1 TATTATATATATAATAAT
*
43120 TAATTCTATAT-TAATAAT
1 T-ATTATATATATAATAAT
*
43138 T-TGATATATAATAATATAT
1 TATTATATAT-ATAATA-AT
43157 TAT
1 TAT
43160 ATTATTATAT
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
16 10 0.17
17 2 0.03
18 29 0.48
19 8 0.13
20 7 0.12
21 4 0.07
ACGTcount: A:0.45, C:0.01, G:0.02, T:0.52
Consensus pattern (18 bp):
TATTATATATATAATAAT
Found at i:43124 original size:41 final size:42
Alignment explanation
Indices: 43061--43172 Score: 121
Period size: 40 Copynumber: 2.8 Consensus size: 42
43051 TAATTATCCT
*
43061 TATATATTA-TATATATAATAATTATTATATATAAT-ATTTGA
1 TATATAATATTATAT-TAATAATTATTATATATAATAATTTGA
* *
43102 -ATTTAATATTATATTAATTAATT-CTATAT-TAATAATTTGA
1 TATATAATATTATATTAA-TAATTATTATATATAATAATTTGA
*
43142 TATATAATAATATATT-AT-ATTATTATATATA
1 TATATAATATTATATTAATAATTATTATATATA
43173 CTTAAAACAA
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
38 3 0.05
39 10 0.17
40 23 0.39
41 23 0.39
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.52
Consensus pattern (42 bp):
TATATAATATTATATTAATAATTATTATATATAATAATTTGA
Found at i:43129 original size:15 final size:14
Alignment explanation
Indices: 43111--43152 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
43101 AATTTAATAT
43111 TATATTAATTAATTC
1 TATATTAA-TAATTC
43126 TATATTAATAATT-
1 TATATTAATAATTC
43139 TGATATATAATAAT
1 T-ATAT-TAATAAT
43153 ATATTATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.04
14 9 0.36
15 15 0.60
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (14 bp):
TATATTAATAATTC
Found at i:43792 original size:27 final size:25
Alignment explanation
Indices: 43762--43830 Score: 59
Period size: 28 Copynumber: 2.6 Consensus size: 25
43752 TATCAATAAT
*
43762 TAAATTATTAATTATTAAAAATTCTCA
1 TAAATTATTAATTA-TAAAAATTC-AA
* *
43789 TAAACATTTTTTATTATAAAAATTCAA
1 T-AA-ATTATTAATTATAAAAATTCAA
*
43816 TAAA-TATTAAATATA
1 TAAATTATTAATTATA
43831 TGATATTAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
24 8 0.24
25 1 0.03
26 2 0.06
27 3 0.09
28 11 0.32
29 9 0.26
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (25 bp):
TAAATTATTAATTATAAAAATTCAA
Found at i:44095 original size:17 final size:17
Alignment explanation
Indices: 44049--44105 Score: 75
Period size: 17 Copynumber: 3.5 Consensus size: 17
44039 TCAAATTAAC
44049 TTATAATTAATTATAATA
1 TTATAATTAATT-TAATA
*
44067 --AT-ATTAACTTAATA
1 TTATAATTAATTTAATA
44081 TTATAATTAATTTAATA
1 TTATAATTAATTTAATA
44098 TTATAATT
1 TTATAATT
44106 GTTCAAAGAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
14 5 0.15
15 6 0.18
16 4 0.12
17 19 0.56
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TTATAATTAATTTAATA
Found at i:44683 original size:17 final size:17
Alignment explanation
Indices: 44654--44687 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
44644 TTATTGATAT
44654 AATTTATAAATTTATTA
1 AATTTATAAATTTATTA
44671 AATTT-TAATATTTATTA
1 AATTTATAA-ATTTATTA
44688 TATTAGGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTTATAAATTTATTA
Found at i:45148 original size:12 final size:12
Alignment explanation
Indices: 45133--45174 Score: 68
Period size: 12 Copynumber: 3.6 Consensus size: 12
45123 GAATAAATAA
*
45133 TTATAATTATTT
1 TTATAATTAATT
45145 TTAT-ATTAATT
1 TTATAATTAATT
45156 TTATAATTAATT
1 TTATAATTAATT
45168 TTATAAT
1 TTATAAT
45175 AGATTAATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
11 10 0.36
12 18 0.64
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTATAATTAATT
Found at i:45184 original size:23 final size:21
Alignment explanation
Indices: 45128--45180 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
45118 TATTCGAATA
*
45128 AATAATTATAATTATTTTTAT
1 AATAATTATAATTAATTTTAT
*
45149 ATTAATTTTATAATTAATTTTAT
1 AATAA--TTATAATTAATTTTAT
45172 AATAGATTA
1 AATA-ATTA
45181 ATAAATTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 4 0.15
22 3 0.12
23 18 0.69
24 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (21 bp):
AATAATTATAATTAATTTTAT
Found at i:45751 original size:16 final size:17
Alignment explanation
Indices: 45730--45762 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
45720 AAATAATAAC
45730 TAATATAGT-ATAATTA
1 TAATATAGTAATAATTA
*
45746 TAATATATTAATAATTA
1 TAATATAGTAATAATTA
45763 ATTAATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (17 bp):
TAATATAGTAATAATTA
Found at i:45806 original size:20 final size:20
Alignment explanation
Indices: 45740--45807 Score: 63
Period size: 20 Copynumber: 3.4 Consensus size: 20
45730 TAATATAGTA
*
45740 TAATTATAA-TATATTAATAAT
1 TAATT-TAATTATATAAAT-AT
45761 TAA-TTAATTATATAAGATA-
1 TAATTTAATTATATAA-ATAT
45780 -AATTTTAATTATATAAATAT
1 TAA-TTTAATTATATAAATAT
45800 TAATTTAA
1 TAATTTAA
45808 ATTTAATATA
Statistics
Matches: 40, Mismatches: 1, Indels: 13
0.74 0.02 0.24
Matches are distributed among these distances:
18 2 0.05
19 6 0.15
20 25 0.62
21 7 0.17
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (20 bp):
TAATTTAATTATATAAATAT
Found at i:46343 original size:40 final size:40
Alignment explanation
Indices: 46269--46344 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
46259 TACTAATATC
*
46269 TTATAATAATATAAATTAAATATAATTATTATAAATAATT
1 TTATAATAATATAAATTAAATATAATTATGATAAATAATT
46309 TTATAATTAAT-TAATATTAAA-A-AATTAATGATAAAT
1 TTATAA-TAATATAA-ATTAAATATAATT-ATGATAAAT
46345 TAACAAGTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
39 4 0.12
40 18 0.56
41 10 0.31
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.43
Consensus pattern (40 bp):
TTATAATAATATAAATTAAATATAATTATGATAAATAATT
Found at i:47174 original size:24 final size:25
Alignment explanation
Indices: 47142--47200 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 25
47132 TTCTTATGAT
*
47142 TTAAATATATAAT-TTATTAAATTA
1 TTAACTATATAATATTATTAAATTA
* *
47166 TTAACTATA-AATATTATTTAGTTA
1 TTAACTATATAATATTATTAAATTA
47190 -TAATCTATATA
1 TTAA-CTATATA
47201 GTTAAAATTC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 6 0.21
24 22 0.76
25 1 0.03
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (25 bp):
TTAACTATATAATATTATTAAATTA
Found at i:47238 original size:15 final size:16
Alignment explanation
Indices: 47218--47252 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
47208 TTCAAATAAA
47218 AATTTTAA-TAATTTT
1 AATTTTAATTAATTTT
*
47233 AATTTTAATTCATTTT
1 AATTTTAATTAATTTT
47249 AATT
1 AATT
47253 ATATAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
AATTTTAATTAATTTT
Found at i:47334 original size:25 final size:22
Alignment explanation
Indices: 47298--47352 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 22
47288 TATATTATAG
*
47298 TATTAAATATAACTAGTACAAATA
1 TATTTAATATAACTAGTA-AAA-A
* *
47322 TATTTAATAATAATTATTAAAAA
1 TATTTAAT-ATAACTAGTAAAAA
47345 TATTTAAT
1 TATTTAAT
47353 TAAATTCTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 9 0.33
24 10 0.37
25 8 0.30
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.42
Consensus pattern (22 bp):
TATTTAATATAACTAGTAAAAA
Found at i:48340 original size:182 final size:180
Alignment explanation
Indices: 48017--48483 Score: 481
Period size: 182 Copynumber: 2.6 Consensus size: 180
48007 TAATTTGTTA
* * * * * * *
48017 AATAGTCATAACTATTT-AATTGATTTGATAAATAGATTTATTTTTTAAA--T-TT-GTTATTAG
1 AATAGTCATAAATATTTAAACTGGTTAGATAAATAAATTTA-TTTTTAAATCTCTTACTTATTAA
* * * * **
48077 TTTTCAAAATATTAATAGATTAGTATTACTTTATTCCGAACAAACTTA-TATGAA-CAAAAATAT
65 TTTTCAAAATATTAATAGATTAGTATTATTTTATTTCGAATAAGC-TAGTATGAATTGAAAATAT
* * *
48140 TTGTTTTATGACAAAACAAAAGGTCATAATGATTTAAAATATATAATTGCTCA-
129 TTGTTTTATGACAAAACAAAAAGTCATAATG-TTTAAAATACACAATTG-TCAT
* * * *
48193 AATAGTCATAATTATTTGAATTGGTTAGGTAAACATAATTATTT-TTTTTAAATCTCTTACTTAT
1 AATAGTCATAAATATTTAAACTGGTTAGAT-AA-ATAA--ATTTATTTTTAAATCTCTTACTTAT
** *
48257 TAATTTTTGAAATATTAATAGATTCA-T-TTATTTTATTTTGAATAAGCTAGTATGAATTGAAAA
62 TAATTTTCAAAATATTAATAGATT-AGTATTATTTTATTTCGAATAAGCTAGTATGAATTGAAAA
* * *
48320 T-TTTGTTTTATGATAAAACAAAAAGTCATAATGTTTGAAATACACAATTGTTAT
126 TATTTGTTTTATGACAAAACAAAAAGTCATAATGTTTAAAATACACAATTGTCAT
* * * * *
48374 TATAGTCTTAAATATTTAAACTGGTTTGATAAATAAATTTATTTTTAATTCTCTTAGTTATTAAT
1 AATAGTCATAAATATTTAAACTGGTTAGATAAATAAATTTATTTTTAAATCTCTTACTTATTAAT
*
48439 TTTCAAAATATTATTAGATTAGTATTATTTTATTTCGAATAAGCT
66 TTTCAAAATATTAATAGATTAGTATTATTTTATTTCGAATAAGCT
48484 TTTTATGAAA
Statistics
Matches: 240, Mismatches: 35, Indels: 29
0.79 0.12 0.10
Matches are distributed among these distances:
176 16 0.07
177 14 0.06
178 42 0.17
179 35 0.15
180 4 0.02
181 44 0.18
182 53 0.22
183 31 0.13
184 1 0.00
ACGTcount: A:0.39, C:0.07, G:0.09, T:0.45
Consensus pattern (180 bp):
AATAGTCATAAATATTTAAACTGGTTAGATAAATAAATTTATTTTTAAATCTCTTACTTATTAAT
TTTCAAAATATTAATAGATTAGTATTATTTTATTTCGAATAAGCTAGTATGAATTGAAAATATTT
GTTTTATGACAAAACAAAAAGTCATAATGTTTAAAATACACAATTGTCAT
Found at i:48705 original size:15 final size:14
Alignment explanation
Indices: 48617--48716 Score: 57
Period size: 14 Copynumber: 7.1 Consensus size: 14
48607 AGTATTACAA
*
48617 AAATAATAAAATAT
1 AAATAATAAATTAT
* * *
48631 TAATATTAAAGTAT
1 AAATAATAAATTAT
48645 AAATAAT-AATTATT
1 AAATAATAAATTA-T
* *
48659 AATATATTTTAATT-T
1 AA-ATA-ATAAATTAT
48674 AAAT-ATATAA-T-T
1 AAATAATA-AATTAT
48686 AAATAAGTAAATTAT
1 AAATAA-TAAATTAT
*
48701 AAATAATAATTTAT
1 AAATAATAAATTAT
48715 AA
1 AA
48717 TTATTATTAA
Statistics
Matches: 67, Mismatches: 10, Indels: 18
0.71 0.11 0.19
Matches are distributed among these distances:
12 7 0.10
13 9 0.13
14 33 0.49
15 13 0.19
16 1 0.01
17 4 0.06
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (14 bp):
AAATAATAAATTAT
Found at i:48910 original size:16 final size:15
Alignment explanation
Indices: 48885--48915 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
48875 ATCCTTATAT
48885 ATTATATATATAATA
1 ATTATATATATAATA
48900 ATTATTATATATAATA
1 ATTA-TATATATAATA
48916 TTTGAATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATATATATAATA
Found at i:49253 original size:35 final size:36
Alignment explanation
Indices: 49173--49253 Score: 87
Period size: 35 Copynumber: 2.3 Consensus size: 36
49163 TTAATATTAA
** *
49173 ACTATTTAATTATAATTTTTTATTAACATTTAAATT
1 ACTATTTAATTATAATTAATTATAAACATTTAAATT
* *
49209 A-TATGTAATTA-AATTAATTA-AAACTTTTGAAATT
1 ACTATTTAATTATAATTAATTATAAACATTT-AAATT
49243 ACTATTTAATT
1 ACTATTTAATT
49254 TATTTACACA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
33 6 0.16
34 13 0.35
35 17 0.46
36 1 0.03
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (36 bp):
ACTATTTAATTATAATTAATTATAAACATTTAAATT
Found at i:49427 original size:16 final size:17
Alignment explanation
Indices: 49395--49427 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
49385 TACCAGTTCT
49395 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
49413 AATAATTAT-CTATTT
1 AATAATTATACTATTT
49428 CAAATCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:50031 original size:15 final size:14
Alignment explanation
Indices: 50004--50034 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
49994 ACATTTTATC
50004 ATAATAATAATTAA
1 ATAATAATAATTAA
50018 ATAATAAGTAATTAA
1 ATAATAA-TAATTAA
50033 AT
1 AT
50035 TATTAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (14 bp):
ATAATAATAATTAA
Found at i:50269 original size:29 final size:29
Alignment explanation
Indices: 50208--50269 Score: 76
Period size: 28 Copynumber: 2.2 Consensus size: 29
50198 AATAAACTCA
* *
50208 TAATT-TTATAATTATAATAATAGTCAAT
1 TAATTATTATAATTATAATAATAATAAAT
50236 T-ATTATTATAACTTATAATAA-AATAAAT
1 TAATTATTATAA-TTATAATAATAATAAAT
50264 TAATTA
1 TAATTA
50270 CTATTAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 3 0.10
28 13 0.45
29 13 0.45
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (29 bp):
TAATTATTATAATTATAATAATAATAAAT
Found at i:50308 original size:29 final size:27
Alignment explanation
Indices: 50240--50312 Score: 80
Period size: 29 Copynumber: 2.7 Consensus size: 27
50230 GTCAATTATT
50240 ATTATAACTTATAA-TAAAATAAATTA
1 ATTATAACTTATAATTAAAATAAATTA
*
50266 ATTACT-A-TTAATAATTAAATTAAAATTTA
1 ATTA-TAACTT-ATAATTAAAAT-AAA-TTA
50295 ATTATAACTTATAATTAA
1 ATTATAACTTATAATTAA
50313 TTATAATATT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
25 2 0.05
26 9 0.23
27 6 0.15
28 4 0.10
29 16 0.41
30 2 0.05
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.42
Consensus pattern (27 bp):
ATTATAACTTATAATTAAAATAAATTA
Found at i:50439 original size:18 final size:18
Alignment explanation
Indices: 50416--50450 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
50406 GTCCAATTAA
50416 ATTATATAATAAATAATT
1 ATTATATAATAAATAATT
*
50434 ATTATATAATATATAAT
1 ATTATATAATAAATAAT
50451 ATACAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTATATAATAAATAATT
Found at i:50451 original size:25 final size:25
Alignment explanation
Indices: 50418--50483 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
50408 CCAATTAAAT
*
50418 TATATAATAAATAATTATTATATA-A
1 TATATAATAAATAATTATAAT-TACA
* *
50443 TATATAATATACAATTATAATTACA
1 TATATAATAAATAATTATAATTACA
*
50468 TATTATAATAATTAAT
1 TA-TATAATAAATAAT
50484 ATGATTCAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
24 2 0.06
25 21 0.64
26 10 0.30
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (25 bp):
TATATAATAAATAATTATAATTACA
Found at i:50463 original size:13 final size:14
Alignment explanation
Indices: 50431--50477 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
50421 ATAATAAATA
*
50431 ATTATTATATA-AT
1 ATTATAATATACAT
50444 A-TATAATATACA-
1 ATTATAATATACAT
50456 ATTATAAT-TACAT
1 ATTATAATATACAT
50469 ATTATAATA
1 ATTATAATA
50478 ATTAATATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
12 13 0.45
13 16 0.55
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTATAATATACAT
Found at i:50591 original size:18 final size:19
Alignment explanation
Indices: 50568--50603 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
50558 AATTATTATA
50568 ATAAATAGTAA-TAATATT
1 ATAAATAGTAACTAATATT
*
50586 ATAAATATTAACTAATAT
1 ATAAATAGTAACTAATAT
50604 ATGACTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (19 bp):
ATAAATAGTAACTAATATT
Found at i:50648 original size:18 final size:18
Alignment explanation
Indices: 50500--50650 Score: 53
Period size: 18 Copynumber: 8.1 Consensus size: 18
50490 CAAAAAATAT
*
50500 TATTAATAATATTTAATTA
1 TATTAAT-ATATTAAATTA
* *
50519 TAATAATTTATTAAATTA
1 TATTAATATATTAAATTA
* *
50537 TTACATGATACTATATAAATTA
1 -TA-TTAATA-TAT-TAAATTA
* *
50559 -ATTATTATAATAAA-TA
1 TATTAATATATTAAATTA
* *
50575 GTAATAATATTATAAATATTA
1 -TATTAATA-TATTAA-ATTA
* * *
50596 -ACTAATATATGACTATTA
1 TATTAATATATTA-AATTA
50614 GT-TTAA-A-ATTGAAATTA
1 -TATTAATATATT-AAATTA
50631 TATTAATATATTAAATTA
1 TATTAATATATTAAATTA
50649 TA
1 TA
50651 ATAGCCAAAT
Statistics
Matches: 97, Mismatches: 19, Indels: 33
0.65 0.13 0.22
Matches are distributed among these distances:
16 3 0.03
17 14 0.14
18 35 0.36
19 27 0.28
20 6 0.06
21 5 0.05
22 7 0.07
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (18 bp):
TATTAATATATTAAATTA
Found at i:51317 original size:11 final size:11
Alignment explanation
Indices: 51301--51325 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51291 GTATAAATAT
51301 TAATTTATTAG
1 TAATTTATTAG
51312 TAATTTATTAG
1 TAATTTATTAG
51323 TAA
1 TAA
51326 GAAAAATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (11 bp):
TAATTTATTAG
Found at i:52088 original size:23 final size:23
Alignment explanation
Indices: 52062--52129 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 23
52052 TGCAATTATT
52062 TAAATTAAAAATAAATAATTAAG
1 TAAATTAAAAATAAATAATTAAG
* * * *
52085 TAAA-TAGATAATCATTAATTAAT
1 TAAATTA-AAAATAAATAATTAAG
*
52108 TAAATATAAAACTAAATAATTA
1 TAAAT-TAAAAATAAATAATTA
52130 TATTATTATC
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
22 2 0.06
23 20 0.59
24 10 0.29
25 2 0.06
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.34
Consensus pattern (23 bp):
TAAATTAAAAATAAATAATTAAG
Found at i:52279 original size:22 final size:22
Alignment explanation
Indices: 52229--52283 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
52219 TTAGGATAAT
*
52229 TTTAATTATTATCATAATACTA
1 TTTAATAATTATCATAATACTA
* *
52251 ATT-ATAATCTATTATAAT-CTA
1 TTTAATAAT-TATCATAATACTA
52272 TTTAATAATTAT
1 TTTAATAATTAT
52284 AATTAATATT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
21 12 0.44
22 15 0.56
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (22 bp):
TTTAATAATTATCATAATACTA
Found at i:53665 original size:181 final size:178
Alignment explanation
Indices: 53393--54162 Score: 654
Period size: 180 Copynumber: 4.3 Consensus size: 178
53383 TAAATTGATT
* * * * * *
53393 AAACAAAAGGTCAAAATGATTTGAAATAGAAAATTATTCTAATAATCTTAACTATTTGAACT-TA
1 AAAC-AAAGATCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGT-
*
53457 TT-GACAAAC-ACATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTATTAAATTAG
64 TTAG-CAAACAAC-TTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTATTAAATTAG
* * *
53520 TATTATTTTTATCTAAATTAGCTTATAAGATAAAAAAACAATTGTTTTATGACA
127 TATTA-TTTTATCTAAATAAGCTTGTAAGA-AATAAAACAATTGTTTTATGACA
* * * *
53574 AAACAAAGATCATAATGATTTGAGATTA-ATATTTGTTCAAATAGTCATAACTATTAGAACTGCT
1 AAACAAAGATCATAATGATTTGA-AATAGATAATTATTCAAATAGTCATAACTATTTGAACTG-T
* * * * *
53638 TTGAG-AAACAACTTTAGTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGT
64 TT-AGCAAACAACTTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTATTAAATTAGT
* * * * * ** * * *
53702 ATTATTTTATTTCAGATCAGTTTTTATTAACTGAAACAATTATTTTATGACA
128 ATTATTTTATCT-AAATAAGCTTGTAAGAAATAAAACAATTGTTTTATGACA
* * * * * * *
53754 AAACAAA-ATGTCAAAATAATTTTAAACAGATAATTATTTAAATAGTCATATCTATTTGAAATTG
1 AAACAAAGA--TCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTG-AACTG
* * * * *
53818 TTTAGTAAACAAATTTATTTTTTTAAATCTCTTAC-T-TTAAATTTTGGAATGTTGA-TAAATTA
63 TTTAGCAAACAACTTTA-TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATT-ATTAAATTA
* * * * *
53880 GTATTATTTTATTCCAAATAAGCTTGTATGAACTAAAATAATTGTTTTATGACT
126 GTATTATTTTA-TCTAAATAAGCTTGTAAGAAATAAAACAATTGTTTTATGACA
* * * *** *
53934 AAACAAAAGGAT-AGAATGATTTGAAATAGAGAATCATTTTGATAGTCTTAACTATTTGAACTAG
1 AAAC-AAA-GATCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT-G
*
53998 TTTAGCTAACATAC-TTATTTTTTAAA--TC-T-CTTATTAATTTTTGAAATATTATTAAATTAG
63 TTTAGCAAACA-ACTTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTATTAAATTAG
* * * ** *
54058 TATCATTTTAATCTGAATAAGCTTGTATGAAAGGAAACAATTGTTGTATGACA
127 TATTATTTT-ATCTAAATAAGCTTGTAAGAAATAAAACAATTGTTTTATGACA
* * * *
54111 AAATAAAGATCATTATGATTTGAGATAGATAATTGTTCAAATCA-TCATAACT
1 AAACAAAGATCATAATGATTTGAAATAGATAATTATTCAAAT-AGTCATAACT
54163 TATATTAATA
Statistics
Matches: 469, Mismatches: 94, Indels: 57
0.76 0.15 0.09
Matches are distributed among these distances:
175 4 0.01
176 35 0.07
177 70 0.15
178 1 0.00
179 13 0.03
180 193 0.41
181 129 0.28
182 22 0.05
183 2 0.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (178 bp):
AAACAAAGATCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTGTTT
AGCAAACAACTTTATTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTATTAAATTAGTATT
ATTTTATCTAAATAAGCTTGTAAGAAATAAAACAATTGTTTTATGACA
Found at i:54022 original size:361 final size:357
Alignment explanation
Indices: 53393--54067 Score: 760
Period size: 361 Copynumber: 1.9 Consensus size: 357
53383 TAAATTGATT
* * * *
53393 AAACAAAAGGTCAAAATGATTTGAAATAGAAAATTATTCTAATAATCTTAACTATTTGAACTTAT
1 AAACAAAAGGTCAAAATAATTTGAAACAGAAAATTATTCTAATAATCATAACTATTTGAAATTAT
* *
53458 TGACAAACACATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTATTAAATTAGTAT
66 TGACAAACAAATTTATTTTTTAAATCTCTTACTTATTAAATTTTAAAATATTATTAAATTAGTAT
* * *
53523 TATTTTTATCTAAATTAGCTTATAAGATAAAAAAACAATTGTTTTATGACAAAACAAAGATCATA
131 TATTTTTATCCAAATAAGCTTATAAGATAAAAAAACAATTGTTTTATGACAAAACAAAGATCAGA
* * * **
53588 ATGATTTGAGATTAATATTTGTTCAAATAGTCATAACTATTAGAACTGCTTTGAGAAACAACTTT
196 ATGATTTGAGAATAAGAATCATTCAAATAGTCATAACTATTAGAACTGCTTTGAGAAACAACTTT
*
53653 AGTTTTTAAATCTCTTGCTTAATAATTTTTGAAATATTAATAAAGTAGTATTATTTTATTTCAGA
261 AGTTTTTAAA--TC-T-CTTAATAATTTTTGAAATATTAATAAAGTAGTATCATTTTATTTCAGA
53718 TCAGTTTTTATTAACTGAAACAATTATTTTATGACA
322 TCAGTTTTTATTAACTGAAACAATTATTTTATGACA
* * * * * *
53754 AAACAAAATGTCAAAATAATTTTAAACAGATAATTATT-TAAATAGTCATATCTATTTGAAATTG
1 AAACAAAAGGTCAAAATAATTTGAAACAGAAAATTATTCT-AATAATCATAACTATTTGAAATTA
* * ** *
53818 TTTAGTAAACAAATTTATTTTTTTAAATCTCTTAC-T-TTAAATTTTGGAATGTTGA-TAAATTA
65 TTGA-CAAACAAATTTA-TTTTTTAAATCTCTTACTTATTAAATTTTAAAATATT-ATTAAATTA
* * ** * *
53880 GTATTA-TTTTATTCCAAATAAGCTTGTATGA-ACTAAAATAATTGTTTTATGACTAAACAAAAG
127 GTATTATTTTTA-TCCAAATAAGCTTATAAGATAAAAAAACAATTGTTTTATGACAAAAC-AAA-
*** * *
53943 GAT-AGAATGATTTGA-AATAGAGAATCATTTTGATAGTCTTAACTATTTGAACTAG-TTT-AGC
189 GATCAGAATGATTTGAGAATA-AGAATCATTCAAATAGTCATAACTATTAGAACT-GCTTTGAG-
* * * * *
54004 TAACATAC-TTATTTTTTAAATCTCTTATTAATTTTTGAAATATTATTAAATTAGTATCATTTTA
251 AAACA-ACTTTAGTTTTTAAATCTCTTAATAATTTTTGAAATATTAATAAAGTAGTATCATTTTA
54068 ATCTGAATAA
Statistics
Matches: 261, Mismatches: 42, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
357 37 0.14
358 1 0.00
359 2 0.01
360 34 0.13
361 152 0.58
362 18 0.07
363 17 0.07
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (357 bp):
AAACAAAAGGTCAAAATAATTTGAAACAGAAAATTATTCTAATAATCATAACTATTTGAAATTAT
TGACAAACAAATTTATTTTTTAAATCTCTTACTTATTAAATTTTAAAATATTATTAAATTAGTAT
TATTTTTATCCAAATAAGCTTATAAGATAAAAAAACAATTGTTTTATGACAAAACAAAGATCAGA
ATGATTTGAGAATAAGAATCATTCAAATAGTCATAACTATTAGAACTGCTTTGAGAAACAACTTT
AGTTTTTAAATCTCTTAATAATTTTTGAAATATTAATAAAGTAGTATCATTTTATTTCAGATCAG
TTTTTATTAACTGAAACAATTATTTTATGACA
Found at i:54504 original size:29 final size:29
Alignment explanation
Indices: 54449--54504 Score: 67
Period size: 29 Copynumber: 1.9 Consensus size: 29
54439 AAATTAGTTT
* *
54449 TATAGTTAATTATAATTAATTATATAAAC
1 TATAGTTAATTATAATCAATTAAATAAAC
* * *
54478 TATATTTAATTATTATCATTTAAATAA
1 TATAGTTAATTATAATCAATTAAATAA
54505 TTAAATGGTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 22 1.00
ACGTcount: A:0.46, C:0.04, G:0.02, T:0.48
Consensus pattern (29 bp):
TATAGTTAATTATAATCAATTAAATAAAC
Found at i:54838 original size:18 final size:18
Alignment explanation
Indices: 54815--54852 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
54805 ATAAAAATAA
* *
54815 TAATAAAATAGTTTAAAT
1 TAATAAAATAATTAAAAT
54833 TAATAAAATAATTAAAAT
1 TAATAAAATAATTAAAAT
54851 TA
1 TA
54853 TTAATTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (18 bp):
TAATAAAATAATTAAAAT
Found at i:55001 original size:14 final size:15
Alignment explanation
Indices: 54972--55020 Score: 50
Period size: 14 Copynumber: 3.4 Consensus size: 15
54962 TTTTTTAGAT
*
54972 ATTGTTATTATAATTA
1 ATTGTTACT-TAATTA
54988 ATTGTTA-TTAATTA
1 ATTGTTACTTAATTA
*
55002 A-TATTACTTAA-TA
1 ATTGTTACTTAATTA
55015 ATTGTT
1 ATTGTT
55021 TAATAAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
13 7 0.24
14 14 0.48
15 1 0.03
16 7 0.24
ACGTcount: A:0.37, C:0.02, G:0.06, T:0.55
Consensus pattern (15 bp):
ATTGTTACTTAATTA
Found at i:55017 original size:27 final size:23
Alignment explanation
Indices: 54986--55034 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
54976 TTATTATAAT
54986 TAATTGTTATTAATTAATATTACTTAA
1 TAATTG-T-TTAA-TAA-ATTACTTAA
55013 TAATTGTTTAATAAATTACTTA
1 TAATTGTTTAATAAATTACTTA
55035 TTAAACTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 8 0.36
24 3 0.14
25 4 0.18
26 1 0.05
27 6 0.27
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.51
Consensus pattern (23 bp):
TAATTGTTTAATAAATTACTTAA
Found at i:55468 original size:19 final size:21
Alignment explanation
Indices: 55428--55510 Score: 66
Period size: 24 Copynumber: 3.9 Consensus size: 21
55418 TTAAATATAA
55428 ATATAAATATTATATTATATT
1 ATATAAATATTATATTATATT
55449 ATATATAATATTAATAATTAT-TGT
1 ATATA-AATATT-AT-ATTATAT-T
55473 ATAATAAATA-T-TATTATATT
1 AT-ATAAATATTATATTATATT
* *
55493 -TAAAAATAATATAGTTAT
1 ATATAAATATTATA-TTAT
55511 CTATTTTTAT
Statistics
Matches: 52, Mismatches: 1, Indels: 18
0.73 0.01 0.25
Matches are distributed among these distances:
18 6 0.12
19 2 0.04
20 8 0.15
21 11 0.21
22 6 0.12
23 4 0.08
24 12 0.23
25 3 0.06
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.48
Consensus pattern (21 bp):
ATATAAATATTATATTATATT
Found at i:55470 original size:27 final size:28
Alignment explanation
Indices: 55421--55488 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 28
55411 TTAAAAATTA
* *
55421 AATATA-AATATAAATATTATATTATAT
1 AATATATAATATTAATAATATATTATAT
* *
55448 TATATATAATATTAATAAT-TATTGTAT
1 AATATATAATATTAATAATATATTATAT
* *
55475 AATAAATATTATTA
1 AATATATAATATTA
55489 TATTTAAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
27 23 0.70
28 10 0.30
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (28 bp):
AATATATAATATTAATAATATATTATAT
Found at i:55483 original size:29 final size:29
Alignment explanation
Indices: 55419--55483 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
55409 ATTTAAAAAT
*
55419 TAAATATAAATATAAATATTATATTATAT
1 TAAATATAAATATAAATATTATATTATAA
* *
55448 TATATAT-AATATTAATAATTAT-TGTATAA
1 TAAATATAAATATAAAT-ATTATAT-TATAA
55477 TAAATAT
1 TAAATAT
55484 TATTATATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
28 9 0.30
29 21 0.70
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (29 bp):
TAAATATAAATATAAATATTATATTATAA
Found at i:55519 original size:25 final size:22
Alignment explanation
Indices: 55475--55519 Score: 54
Period size: 25 Copynumber: 1.9 Consensus size: 22
55465 ATTATTGTAT
55475 AATAAATATTATTATATTTAAA
1 AATAAATATTATTATATTTAAA
*
55497 AATAATATAGTTATCTATTTTTA
1 AATAA-ATA-TTAT-TATATTTA
55520 TCTCATATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 3 0.16
24 4 0.21
25 7 0.37
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (22 bp):
AATAAATATTATTATATTTAAA
Found at i:55970 original size:10 final size:11
Alignment explanation
Indices: 55957--56023 Score: 51
Period size: 10 Copynumber: 6.7 Consensus size: 11
55947 AATTTATCTT
55957 TTATTATAT-A
1 TTATTATATAA
55967 TTATTA-ATAA
1 TTATTATATAA
*
55977 TTATTATATTA
1 TTATTATATAA
55988 -TATTA-A-AA
1 TTATTATATAA
55996 TTAATTA-ATAA
1 TT-ATTATATAA
56007 TTA-TAT-TAA
1 TTATTATATAA
*
56016 TTAATATA
1 TTATTATA
56024 ATCAATTTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 15
0.73 0.03 0.23
Matches are distributed among these distances:
8 1 0.02
9 12 0.26
10 27 0.57
11 7 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (11 bp):
TTATTATATAA
Found at i:55980 original size:20 final size:19
Alignment explanation
Indices: 55957--56015 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 19
55947 AATTTATCTT
55957 TTATTATA-TATTATTAATAA
1 TTATTATATTA-TATTAA-AA
55977 TTATTATATTATATTAAAA
1 TTATTATATTATATTAAAA
55996 TTAATTAATAATTATATTAA
1 TT-ATT-AT-ATTATATTAA
56016 TTAATATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.11
20 17 0.49
21 4 0.11
22 10 0.29
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTATTATATTATATTAAAA
Found at i:56014 original size:16 final size:16
Alignment explanation
Indices: 55963--56021 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
55953 TCTTTTATTA
55963 TATATT-ATTAATAA-
1 TATATTAATTAATAAT
55977 T-TATTATATT-AT-AT
1 TATATTA-ATTAATAAT
*
55991 TAAAATTAATTAATAAT
1 T-ATATTAATTAATAAT
56008 TATATTAATTAATA
1 TATATTAATTAATA
56022 TAATCAATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 5 0.14
14 4 0.11
15 6 0.17
16 18 0.50
17 3 0.08
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TATATTAATTAATAAT
Found at i:56025 original size:5 final size:4
Alignment explanation
Indices: 55969--56040 Score: 55
Period size: 4 Copynumber: 18.0 Consensus size: 4
55959 ATTATATATT
55969 ATTA A-TA ATT- ATTA TATTA TATTA A--A ATTA ATTA A-TA ATTA TATTA
1 ATTA ATTA ATTA ATTA -ATTA -ATTA ATTA ATTA ATTA ATTA ATTA -ATTA
*
56015 ATTA ATATA ATCA ATTTA ATTA ATTA
1 ATTA AT-TA ATTA A-TTA ATTA ATTA
56041 CTATTAAATA
Statistics
Matches: 57, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
2 2 0.04
3 9 0.16
4 26 0.46
5 20 0.35
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (4 bp):
ATTA
Found at i:56030 original size:22 final size:20
Alignment explanation
Indices: 55968--56040 Score: 69
Period size: 22 Copynumber: 3.5 Consensus size: 20
55958 TATTATATAT
*
55968 TATTAA-TAATTATTATATTA
1 TATTAATTAATTAATA-ATTA
55988 TATTAAAATTAATTAATAATTA
1 TATT--AATTAATTAATAATTA
56010 TATTAATTAATATAATCAATT-
1 TATTAATTAAT-TAAT-AATTA
56031 TAATTAATTA
1 T-ATTAATTA
56041 CTATTAAATA
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
20 11 0.24
21 5 0.11
22 22 0.48
23 8 0.17
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (20 bp):
TATTAATTAATTAATAATTA
Found at i:58942 original size:29 final size:32
Alignment explanation
Indices: 58923--58983 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
58913 AATAATAGTT
58923 TATT-TAATA-TT-TAAATATT-ATAATTAAA
1 TATTATAATATTTATAAATATTAATAATTAAA
*
58951 TATTATAATATTTATAAATATTAATAACTAAA
1 TATTATAATATTTATAAATATTAATAATTAAA
58983 T
1 T
58984 TAATTTAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 4 0.14
29 5 0.18
30 2 0.07
31 8 0.29
32 9 0.32
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (32 bp):
TATTATAATATTTATAAATATTAATAATTAAA
Found at i:58951 original size:13 final size:13
Alignment explanation
Indices: 58933--58959 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
58923 TATTTAATAT
58933 TTAAATATTATAA
1 TTAAATATTATAA
58946 TTAAATATTATAA
1 TTAAATATTATAA
58959 T
1 T
58960 ATTTATAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TTAAATATTATAA
Found at i:59000 original size:31 final size:28
Alignment explanation
Indices: 58923--59000 Score: 68
Period size: 31 Copynumber: 2.6 Consensus size: 28
58913 AATAATAGTT
*
58923 TATTTAA-TATTTAAATATTATAATTAAA
1 TATTTAATTA-TTAAATATTATAACTAAA
*
58951 TATTATAATATTTATAAATATTAATAACTAAA
1 TATT-TAAT-TAT-TAAATATT-ATAACTAAA
58983 TTAATTTAATTATTAAAT
1 -T-ATTTAATTATTAAAT
59001 TAAATATTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
28 4 0.10
29 3 0.08
30 1 0.03
31 14 0.35
32 10 0.25
33 5 0.12
34 3 0.08
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (28 bp):
TATTTAATTATTAAATATTATAACTAAA
Found at i:59477 original size:27 final size:27
Alignment explanation
Indices: 59444--59495 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
59434 ACTAATTTAA
59444 TAATTATT-TATAAATTAATTAAATATT
1 TAATTATTAT-TAAATTAATTAAATATT
* *
59471 TAATTATTATTTAATTAATTTAATA
1 TAATTATTATTAAATTAATTAAATA
59496 ATTGCATAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
TAATTATTATTAAATTAATTAAATATT
Found at i:59497 original size:23 final size:25
Alignment explanation
Indices: 59436--59498 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 25
59426 ATATAACTAC
59436 TAATTTAATAATTATTTATA--AAT
1 TAATTTAATAATTATTTATATTAAT
* * *
59459 TAATTAAATATTTAATTATTATTTAAT
1 TAATTTAATAATTATTTA-TA-TTAAT
59486 TAATTTAATAATT
1 TAATTTAATAATT
59499 GCATAGATTA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
23 15 0.48
24 2 0.06
27 14 0.45
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TAATTTAATAATTATTTATATTAAT
Found at i:59638 original size:19 final size:18
Alignment explanation
Indices: 59614--59696 Score: 65
Period size: 16 Copynumber: 4.9 Consensus size: 18
59604 TTAATTTTAT
*
59614 ATTAATTTAACTAATATAA
1 ATTAATTTAAAT-ATATAA
59633 ATTAATTTAAATATATAA
1 ATTAATTTAAATATATAA
*
59651 ATT-A-TTAATTAT-TAA
1 ATTAATTTAAATATATAA
*
59666 A-T-ATTT-AATTTATTAA
1 ATTAATTTAAATATA-TAA
59682 ATTAA--TAAATATATA
1 ATTAATTTAAATATATA
59697 TTTTATTGAA
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
14 5 0.09
15 6 0.11
16 14 0.26
17 7 0.13
18 10 0.19
19 11 0.21
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTAATTTAAATATATAA
Found at i:59668 original size:23 final size:24
Alignment explanation
Indices: 59630--59696 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 24
59620 TTAACTAATA
59630 TAAATTAATTTAAATATATAAATTAT
1 TAAATT-A-TTAAATATATAAATTAT
* *
59656 T-AATTATTAAATATTTAATTTAT
1 TAAATTATTAAATATATAAATTAT
*
59679 TAAATTAATAAATATATA
1 TAAATTATTAAATATATA
59697 TTTTATTGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.44
24 15 0.42
25 4 0.11
26 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
TAAATTATTAAATATATAAATTAT
Found at i:59685 original size:28 final size:28
Alignment explanation
Indices: 59654--59724 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 28
59644 TATATAAATT
59654 ATTAATTATTAAATATTTAATTTATTAA
1 ATTAATTATTAAATATTTAATTTATTAA
* * *
59682 ATT-A--A-TAAATATATATTTTATTGA
1 ATTAATTATTAAATATTTAATTTATTAA
59706 ATTAATTGATATAAATATT
1 ATTAATT-AT-TAAATATT
59725 AAATAAGTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
24 19 0.58
25 2 0.06
27 1 0.03
28 4 0.12
30 7 0.21
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
ATTAATTATTAAATATTTAATTTATTAA
Found at i:59690 original size:24 final size:24
Alignment explanation
Indices: 59630--59711 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
59620 TTAACTAATA
*
59630 TAAATTAATTTAAATATATAAATTAT
1 TAAATTAA--TAAATATATAATTTAT
* *
59656 T-AATTATTAAATATTTAATTTAT
1 TAAATTAATAAATATATAATTTAT
*
59679 TAAATTAATAAATATATATTTTAT
1 TAAATTAATAAATATATAATTTAT
*
59703 TGAATTAAT
1 TAAATTAAT
59712 TGATATAAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
23 15 0.31
24 27 0.56
25 5 0.10
26 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (24 bp):
TAAATTAATAAATATATAATTTAT
Found at i:61147 original size:20 final size:21
Alignment explanation
Indices: 61112--61237 Score: 89
Period size: 20 Copynumber: 5.8 Consensus size: 21
61102 ATTTAAAACA
61112 ATTATATTAGTTATATTATAAAT
1 ATTA-ATTA-TTATATTATAAAT
61135 ATTAA-TATTATATTATAAAT
1 ATTAATTATTATATTATAAAT
*
61155 ATTAATTATTA-CTTATAATTAT
1 ATTAATTATTATATTATAA--AT
* * **
61177 ATTAGATTATTAGAATAATATTT
1 ATTA-ATTATTA-TATTATAAAT
*
61200 ATAATATTAATTATATTAT--AT
1 ATTA-ATT-ATTATATTATAAAT
*
61221 ATTTATTATTATATTAT
1 ATTAATTATTATATTAT
61238 TTGAATTTTT
Statistics
Matches: 84, Mismatches: 12, Indels: 18
0.74 0.11 0.16
Matches are distributed among these distances:
19 10 0.12
20 27 0.32
21 10 0.12
22 7 0.08
23 22 0.26
24 4 0.05
25 4 0.05
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.53
Consensus pattern (21 bp):
ATTAATTATTATATTATAAAT
Found at i:61206 original size:50 final size:53
Alignment explanation
Indices: 61138--61243 Score: 132
Period size: 51 Copynumber: 2.1 Consensus size: 53
61128 TATAAATATT
*
61138 AATATTATATTATAAATATTAATTATTACTTATA-A-TTA-TATTAGATTATTAG
1 AATAATATATTATAAATATTAATTA-TA-TTATATATTTATTATTAGATTATTAG
* *
61190 AATAATAT-TTAT-AATATTAATTATATTATATATTTATTATTATATTATTTG
1 AATAATATATTATAAATATTAATTATATTATATATTTATTATTAGATTATTAG
61241 AAT
1 AAT
61244 TTTTAATATA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
48 5 0.10
49 3 0.06
50 14 0.29
51 19 0.40
52 7 0.15
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.53
Consensus pattern (53 bp):
AATAATATATTATAAATATTAATTATATTATATATTTATTATTAGATTATTAG
Found at i:62175 original size:21 final size:21
Alignment explanation
Indices: 62128--62177 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
62118 ATATGTTCAA
62128 ATAATTA-ATTTATTATAACT
1 ATAATTATATTTATTATAACT
62148 -TATATTATATTATATT-TAACT
1 ATA-ATTATATT-TATTATAACT
62169 ATAATTATA
1 ATAATTATA
62178 ATTAAAGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
19 2 0.08
20 4 0.15
21 14 0.54
22 6 0.23
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (21 bp):
ATAATTATATTTATTATAACT
Found at i:62273 original size:20 final size:22
Alignment explanation
Indices: 62250--62296 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
62240 TAATAATAAG
*
62250 TAATAT-ATTATCAAAT-TATA
1 TAATATAAATATCAAATATATA
* *
62270 TAATTTAAATATTAAATATATA
1 TAATATAAATATCAAATATATA
62292 TAATA
1 TAATA
62297 ATAAGAACAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
TAATATAAATATCAAATATATA
Found at i:62986 original size:21 final size:21
Alignment explanation
Indices: 62948--62987 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
62938 TATAGTAATA
*
62948 AATTATTAAATAATTTATTGG
1 AATTATTAAATAACTTATTGG
62969 AATTATT-AATATACTTATT
1 AATTATTAAATA-ACTTATT
62988 TTTTAAGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (21 bp):
AATTATTAAATAACTTATTGG
Found at i:66397 original size:39 final size:40
Alignment explanation
Indices: 66325--66400 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
66315 TTCAATATGC
* *
66325 TTATTTATTAAACCCAATTATTGGATAATAATTATATGTT
1 TTATTAATTAAACCCAATTATTAGATAATAATTATATGTT
66365 TTATTAATTAAACCACAATTATTAGAT-A-AATTATAT
1 TTATTAATTAAACC-CAATTATTAGATAATAATTATAT
66401 TATGATTAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
39 8 0.24
40 14 0.42
41 11 0.33
ACGTcount: A:0.42, C:0.08, G:0.05, T:0.45
Consensus pattern (40 bp):
TTATTAATTAAACCCAATTATTAGATAATAATTATATGTT
Found at i:66704 original size:17 final size:17
Alignment explanation
Indices: 66661--66713 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
66651 AAATAATTAT
66661 TATAATTAA--ATAATAA
1 TATAATTAATTATAAT-A
66677 TATAATTTAATTATAATA
1 TATAA-TTAATTATAATA
*
66695 TATAATTAATTAAAATA
1 TATAATTAATTATAATA
66712 TA
1 TA
66714 ATATAAATAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
16 5 0.15
17 17 0.52
18 6 0.18
19 5 0.15
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TATAATTAATTATAATA
Found at i:66704 original size:22 final size:21
Alignment explanation
Indices: 66637--66750 Score: 84
Period size: 19 Copynumber: 5.7 Consensus size: 21
66627 ATTTTTACTT
66637 ATTAATTTAAAT-TAA-AATA
1 ATTAATTTAAATATAATAATA
*
66656 ATT-ATTATAATTA-AATAATA
1 ATTAATT-TAAATATAATAATA
*
66676 ATATAATTTAATTATAATATATA
1 AT-TAATTTAAATATAATA-ATA
*
66699 ATTAATTAAAATATAAT-ATA
1 ATTAATTTAAATATAATAATA
* *
66719 AAT-ATTTAAAT-TTA-AAT-
1 ATTAATTTAAATATAATAATA
66736 ATTAATTTTAAATAT
1 ATTAA-TTTAAATAT
66751 TAAAACTAGC
Statistics
Matches: 77, Mismatches: 7, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
17 2 0.03
18 8 0.10
19 23 0.30
20 12 0.16
21 7 0.09
22 20 0.26
23 5 0.06
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
ATTAATTTAAATATAATAATA
Found at i:66745 original size:13 final size:13
Alignment explanation
Indices: 66717--66754 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
66707 AAATATAATA
66717 TAAATATTTAAATT
1 TAAATA-TTAAATT
*
66731 TAAATATTAATTT
1 TAAATATTAAATT
66744 TAAATATTAAA
1 TAAATATTAAA
66755 ACTAGCATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 16 0.73
14 6 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TAAATATTAAATT
Found at i:66829 original size:29 final size:27
Alignment explanation
Indices: 66776--66830 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
66766 TTGTTTTAAT
* *
66776 ATATTAATTTGTTTAAATTAAAAATAA
1 ATATTAATTTATTTAAAGTAAAAATAA
*
66803 ATATTAAATTTATTTTAAGTAATAAATA
1 ATATT-AATTTATTTAAAGTAA-AAATA
66831 TTGCAATAGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 5 0.22
28 13 0.57
29 5 0.22
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (27 bp):
ATATTAATTTATTTAAAGTAAAAATAA
Found at i:66932 original size:3 final size:3
Alignment explanation
Indices: 66924--66957 Score: 50
Period size: 3 Copynumber: 11.0 Consensus size: 3
66914 AATTATATAC
*
66924 TAT TAT TAT TAT TAC TAT TAT TAT TAT TAAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT
66958 AACATATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:66941 original size:15 final size:15
Alignment explanation
Indices: 66915--66952 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
66905 ATATTACTTA
66915 ATTATATACTATTATT
1 ATTAT-TACTATTATT
66931 ATTATTACTATTATT
1 ATTATTACTATTATT
66946 ATTATTA
1 ATTATTA
66953 ATTATAACAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 17 0.77
16 5 0.23
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (15 bp):
ATTATTACTATTATT
Found at i:66989 original size:13 final size:14
Alignment explanation
Indices: 66971--67004 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
66961 ATATAAATCC
66971 TAATTATTA-TAAT
1 TAATTATTAGTAAT
66984 TAATTATTAGTAAT
1 TAATTATTAGTAAT
66998 T-ATTATT
1 TAATTATT
67005 TAAAACAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (14 bp):
TAATTATTAGTAAT
Found at i:67964 original size:28 final size:27
Alignment explanation
Indices: 67924--67980 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 27
67914 AGAAAATTAA
67924 TAATCAATAAACA-TATTTATTAATTTT
1 TAATCAATAAACAGTATTT-TTAATTTT
*
67951 TAATACAATTAACAGTTATTTTTAATTTT
1 TAAT-CAATAAACAG-TATTTTTAATTTT
67980 T
1 T
67981 CAAATGTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 4 0.15
28 8 0.31
29 9 0.35
30 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.51
Consensus pattern (27 bp):
TAATCAATAAACAGTATTTTTAATTTT
Found at i:68561 original size:181 final size:178
Alignment explanation
Indices: 68047--68567 Score: 498
Period size: 181 Copynumber: 2.9 Consensus size: 178
68037 TTACTAATAT
* * * * *
68047 AATATTAATAGATTAGTATTATTTTATTTCGAA-CAAACTTATATGAACA-AAAACATTAGTTTT
1 AATATTAATAGATTAGTTTTATTTTATTTCAAATC-AGCTTGTATGAATAGAAAACATTA-TTTT
* * * *
68110 ATGACAAAACAAAAGGTCATAACAATTTGAAATAGCTAATTGTTCAAATAGTCATAATTATTTGA
64 ATGACAAAACAAAAGGTTATAACAATTTGAAATAAC-AATTATTC-AATAGTCATAACTATTTGA
* * * *
68175 ATTGGTTAGGTAAACAAAATTATTTTTCAATTCTCTTACTTATTAATTTTTGA
127 ATTGGTTAAGTAAAC-AATTTATTTTTTAAATCTCTTACTTATTAATTTTTGA
* * * * * * *
68228 AATTTTAATAAATTTA-TTTTATTTTA-TTCTAAATAAGCTAGTATGAATTGAAAATATTGTTTT
1 AATATTAATAGA-TTAGTTTTATTTTATTTC-AAATCAGCTTGTATGAATAGAAAACATTATTTT
* ** * **
68291 ATGACAAAACAAAAGGTTAAAATGATTTGAAATAGATAATTATTCATATAGTTTTAACTATTTGA
64 ATGACAAAACAAAAGGTTATAACAATTTGAAATA-ACAATTATTCA-ATAGTCATAACTATTTGA
* * * * * *
68356 ACTAGTTCAGCAAACCATTTTATTTTTTAAATCTCTTAGTTATTAATTTTT-A
127 ATTGGTTAAGTAAA-CAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGA
*
68408 GAATATTATTAGATTAGTTTTATTTTATTTCAAATCAGCTTGTATGAATAGAAATA-ATTATTTT
1 -AATATTAATAGATTAGTTTTATTTTATTTCAAATCAGCTTGTATGAATAGAAA-ACATTATTTT
* * * *
68472 ATGACAAAACAAAATGTTATAACAAATT-AAAGTATACAACTACTCTAATAGTCATAACTATTTG
64 ATGACAAAACAAAAGGTTATAACAATTTGAAA-TA-ACAATTATTC-AATAGTCATAACTATTTG
**
68536 AATTGGTTTTGTAAACAGATTTATTTTTTAAA
126 AATTGGTTAAGTAAACA-ATTTATTTTTTAAA
68568 GATTAATAAA
Statistics
Matches: 270, Mismatches: 56, Indels: 28
0.76 0.16 0.08
Matches are distributed among these distances:
180 13 0.05
181 241 0.89
182 16 0.06
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (178 bp):
AATATTAATAGATTAGTTTTATTTTATTTCAAATCAGCTTGTATGAATAGAAAACATTATTTTAT
GACAAAACAAAAGGTTATAACAATTTGAAATAACAATTATTCAATAGTCATAACTATTTGAATTG
GTTAAGTAAACAATTTATTTTTTAAATCTCTTACTTATTAATTTTTGA
Found at i:69126 original size:180 final size:178
Alignment explanation
Indices: 68758--69264 Score: 511
Period size: 180 Copynumber: 2.8 Consensus size: 178
68748 TGGTAAATAG
* * * * *
68758 ATTTATTTTTTTAAATCTCTTTCATATTAATTTTTC-AAATGTTAATAAATTAGTATTAATTTAT
1 ATTTA-TTTTTTAAATCTCTTACTTATTAA-TTTTCAAAATATTATTAAATTAGTATTATTTTAT
* * * * *
68822 TCTAAATAAGCTTGTATGAACTAAAACAATTGTTTTATGACT-AAATAAAAGATCAAAATGATAT
64 TCTAAATAAGCTTGTATGAAC-AAAACAATTGTTTTATGA-TAAAAAAAAAGGTCATAACGATTT
* * * *
68886 GAAATAGATAAGTTTTCTAATAATTTTAACCATTTGAACTGATTCAGCAAACAA
127 GAAATAAATAA-TATTC-AATAATCTTAACCATTTGAACTAATTCAGCAAACAA
* *
68940 ATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGGATTATTTTAATC
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTATTC
* ** * *
69005 CAAATAAGCTTGTACAAACAAAACAATTGTTTTA-CATTAAAAGAAAAGGTCATAACGATTTGAA
66 TAAATAAGCTTGTATGAACAAAACAATTGTTTTATGA-TAAAAAAAAAGGTCATAACGATTTGAA
* ** *
69069 ATAAATAATCATTC-ATAGAGTCTTAACTATTTGAACTAATTC-GACAATTAT
130 ATAAATAAT-ATTCAATA-A-TCTTAACCATTTGAACTAATTCAG-CAAACAA
** * ** *
69120 ATTTATTTTTTAGTTTTCTTGGTTATTAAGTTTCAAAATATTATTAAATTAGTATTATTTTATTC
1 ATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTATTC
** * * * * *
69185 TAAATAAAATAGTATGAACAGAACCAATTGTTTGATGATAAAATAAAAAGGTTATAACTATTTGA
66 TAAATAAGCTTGTATGAACA-AAACAATTGTTTTATGATAAAA-AAAAAGGTCATAACGATTTGA
69250 AATAAATAATTATTC
129 AATAAATAA-TATTC
69265 TATTTGAAAT
Statistics
Matches: 270, Mismatches: 45, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
178 3 0.01
179 5 0.02
180 144 0.53
181 80 0.30
182 37 0.14
183 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.41
Consensus pattern (178 bp):
ATTTATTTTTTAAATCTCTTACTTATTAATTTTCAAAATATTATTAAATTAGTATTATTTTATTC
TAAATAAGCTTGTATGAACAAAACAATTGTTTTATGATAAAAAAAAAGGTCATAACGATTTGAAA
TAAATAATATTCAATAATCTTAACCATTTGAACTAATTCAGCAAACAA
Found at i:69945 original size:27 final size:29
Alignment explanation
Indices: 69915--70006 Score: 70
Period size: 32 Copynumber: 3.2 Consensus size: 29
69905 ATATTTAATG
*
69915 TTATATTA-AATAAA-ATTAATATAAT-AA
1 TTATATTATAATAAATAATAATA-AATAAA
69942 -T-TATTATAATAAATAATAATAAATAAA
1 TTATATTATAATAAATAATAATAAATAAA
*
69969 TTATATTGTTATAATAAACAATAATTATAAT-AA
1 TTATA---TTATAATAAATAATAA-TA-AATAAA
70002 TTATA
1 TTATA
70007 ATTGTTTTCA
Statistics
Matches: 53, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
25 5 0.09
26 10 0.19
27 8 0.15
28 1 0.02
29 2 0.04
32 15 0.28
33 9 0.17
34 3 0.06
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (29 bp):
TTATATTATAATAAATAATAATAAATAAA
Found at i:69949 original size:12 final size:12
Alignment explanation
Indices: 69919--69959 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
69909 TTAATGTTAT
69919 ATTAA-ATAA-A
1 ATTAATATAATA
69929 ATTAATATAATA
1 ATTAATATAATA
*
69941 ATTATTATAATA
1 ATTAATATAATA
*
69953 AATAATA
1 ATTAATA
69960 ATAAATAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
10 5 0.19
11 4 0.15
12 17 0.65
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (12 bp):
ATTAATATAATA
Found at i:69959 original size:19 final size:18
Alignment explanation
Indices: 69935--70001 Score: 56
Period size: 14 Copynumber: 4.0 Consensus size: 18
69925 TAAAATTAAT
69935 ATAATAATTATTATAATAA
1 ATAAT-ATTATTATAATAA
69954 ATAATA--A-TA-AATAA
1 ATAATATTATTATAATAA
* *
69968 ATTATATTGTTATAATAA
1 ATAATATTATTATAATAA
*
69986 ACAATA--ATTATAATAA
1 ATAATATTATTATAATAA
70002 TTATAATTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
14 10 0.26
15 2 0.05
16 10 0.26
17 2 0.05
18 10 0.26
19 5 0.13
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (18 bp):
ATAATATTATTATAATAA
Found at i:69963 original size:25 final size:25
Alignment explanation
Indices: 69918--70008 Score: 60
Period size: 25 Copynumber: 3.4 Consensus size: 25
69908 TTTAATGTTA
69918 TATTA-AATAAAATTAAT-ATAATAAT
1 TATTATAAT-AAA-TAATAATAATAAT
69943 TATTATAATAAATAATAATAAATAAATT
1 TATTATAATAAATAATAAT-AAT-AA-T
* *
69971 ATATTGTTATAATAAACAATAATTATAAT
1 -TA---TTATAATAAATAATAATAATAAT
*
70000 AATTATAAT
1 TATTATAAT
70009 TGTTTTCATA
Statistics
Matches: 54, Mismatches: 3, Indels: 18
0.72 0.04 0.24
Matches are distributed among these distances:
24 4 0.07
25 17 0.31
26 6 0.11
27 2 0.04
28 2 0.04
29 3 0.06
30 2 0.04
31 2 0.04
32 16 0.30
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (25 bp):
TATTATAATAAATAATAATAATAAT
Found at i:70020 original size:34 final size:32
Alignment explanation
Indices: 69945--70012 Score: 93
Period size: 32 Copynumber: 2.1 Consensus size: 32
69935 ATAATAATTA
*
69945 TTATAATAAATAATAATAAATAAATTATATTG
1 TTATAATAAACAATAATAAATAAATTATATTG
69977 TTATAATAAACAATAATTATAAT-AATTATAATTG
1 TTATAATAAACAATAA-TA-AATAAATTAT-ATTG
70011 TT
1 TT
70013 TTCATAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
32 15 0.47
33 8 0.25
34 9 0.28
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (32 bp):
TTATAATAAACAATAATAAATAAATTATATTG
Found at i:70676 original size:35 final size:35
Alignment explanation
Indices: 70633--70719 Score: 103
Period size: 35 Copynumber: 2.6 Consensus size: 35
70623 GATTATTTTT
*
70633 TTAAT-ATAATAATA-AATT-ATTATATAG-T-TTA
1 TTAATAATTATAATATAATTAATT-TATAGTTATTA
*
70664 TTAATTATTATAATATAATTAATTTATAGTTATTA
1 TTAATAATTATAATATAATTAATTTATAGTTATTA
*
70699 TTAATAATTATATTATAATTA
1 TTAATAATTATAATATAATTA
70720 GTTGTAACTA
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
31 5 0.10
32 8 0.17
33 9 0.19
34 4 0.08
35 22 0.46
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (35 bp):
TTAATAATTATAATATAATTAATTTATAGTTATTA
Found at i:71420 original size:39 final size:39
Alignment explanation
Indices: 71377--71467 Score: 98
Period size: 39 Copynumber: 2.3 Consensus size: 39
71367 ATGTTATTAG
* *
71377 TAATAATAATATAATATTATTATTATTAAT-TT-ATTAAAA
1 TAATAATAATATAAT-TGATTATTA-AAATATTCATTAAAA
71416 TAATAATTAATA-AATTGATTATTAAAATATTCATTAAAA
1 TAATAA-TAATATAATTGATTATTAAAATATTCATTAAAA
*
71455 TAATTATTAATAT
1 TAA-TAATAATAT
71468 TTACCTTATT
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
37 3 0.07
38 10 0.23
39 24 0.55
40 7 0.16
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (39 bp):
TAATAATAATATAATTGATTATTAAAATATTCATTAAAA
Found at i:71463 original size:12 final size:12
Alignment explanation
Indices: 71407--71464 Score: 55
Period size: 12 Copynumber: 4.6 Consensus size: 12
71397 TATTATTAAT
71407 TTATTAAAATAA
1 TTATTAAAATAA
* *
71419 TAATTAATAAATTGA
1 TTATT-A-AAA-TAA
71434 TTATTAAAAT-A
1 TTATTAAAATAA
71445 TTCATTAAAATAA
1 TT-ATTAAAATAA
71458 TTATTAA
1 TTATTAA
71465 TATTTACCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
11 3 0.08
12 18 0.47
13 7 0.18
14 4 0.11
15 6 0.16
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (12 bp):
TTATTAAAATAA
Found at i:71463 original size:27 final size:27
Alignment explanation
Indices: 71407--71463 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
71397 TATTATTAAT
*
71407 TTATTAAAATAATAATTAATAAATTGA
1 TTATTAAAATAATAATTAAAAAATTGA
* *
71434 TTATTAAAATATTCATTAAAATAATT-A
1 TTATTAAAATAATAATTAAAA-AATTGA
71461 TTA
1 TTA
71464 ATATTTACCT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (27 bp):
TTATTAAAATAATAATTAAAAAATTGA
Found at i:72235 original size:17 final size:18
Alignment explanation
Indices: 72213--72246 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
72203 AATACAAATT
*
72213 ATTATTATTTA-ATTTAA
1 ATTATTAATTATATTTAA
72230 ATTATTAATTATATTTA
1 ATTATTAATTATATTTA
72247 TTAATAATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTATTAATTATATTTAA
Found at i:72923 original size:9 final size:10
Alignment explanation
Indices: 72909--72949 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
72899 TTAATAAATT
72909 ATAATT-TAA
1 ATAATTATAA
72918 ATAATTATAA
1 ATAATTATAA
*
72928 ATATATTATAT
1 ATA-ATTATAA
72939 AT-ATTATAA
1 ATAATTATAA
72948 AT
1 AT
72950 CTAATAATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 14 0.50
10 6 0.21
11 8 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
ATAATTATAA
Found at i:72946 original size:74 final size:72
Alignment explanation
Indices: 72852--72988 Score: 154
Period size: 74 Copynumber: 1.9 Consensus size: 72
72842 AACAATTCCA
* *
72852 ATAAATATTTTAAAATTTATATGAAT-T-GTAATATAAAT-ATTTTTATATTAATAAATTATAAT
1 ATAAATATATTAAAATTTATA--AATCTAATAATATAAATAATTTTTATATTAAT-AATTATAAT
72914 TTAAATAATT
63 TTAAATAATT
* * * *
72924 ATAAATATATTATATATATTATAAATCTAATAATATATATAATTTTTTTATTAATTATTATAATT
1 ATAAATATATTA-AAAT-TTATAAATCTAATAATATAAATAATTTTTATATTAATAATTATAATT
72989 ATTTATAATG
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
72 14 0.26
73 4 0.07
74 23 0.43
75 13 0.24
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (72 bp):
ATAAATATATTAAAATTTATAAATCTAATAATATAAATAATTTTTATATTAATAATTATAATTTA
AATAATT
Found at i:73264 original size:9 final size:9
Alignment explanation
Indices: 73250--73307 Score: 57
Period size: 9 Copynumber: 6.4 Consensus size: 9
73240 TAAAATTTTA
73250 TATTAATAT
1 TATTAATAT
73259 TATTAATAT
1 TATTAATAT
*
73268 TATTTAA-AA
1 TA-TTAATAT
*
73277 TATATACTAT
1 TAT-TAATAT
*
73287 TATAAATAT
1 TATTAATAT
73296 T-TTAATAT
1 TATTAATAT
73304 TATT
1 TATT
73308 TATAGTATTG
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
8 8 0.21
9 23 0.59
10 8 0.21
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (9 bp):
TATTAATAT
Found at i:74199 original size:30 final size:31
Alignment explanation
Indices: 74165--74228 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
74155 ATATACAAAT
74165 TATAATCTATTCAATAAATAATTAT-ATTAA
1 TATAATCTATTCAATAAATAATTATAATTAA
* * * * *
74195 TATAATTTATTTATTTAATTATTATAATTAA
1 TATAATCTATTCAATAAATAATTATAATTAA
74226 TAT
1 TAT
74229 TACCAATTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 20 0.71
31 8 0.29
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (31 bp):
TATAATCTATTCAATAAATAATTATAATTAA
Found at i:74674 original size:16 final size:16
Alignment explanation
Indices: 74653--74691 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
74643 TTTTAATATA
74653 ATTATTATATTATAAT
1 ATTATTATATTATAAT
* *
74669 ATTATTTTTTTATAAT
1 ATTATTATATTATAAT
74685 A-TATTAT
1 ATTATTAT
74692 TAATGGTATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 5 0.25
16 15 0.75
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTATTATATTATAAT
Found at i:74771 original size:67 final size:67
Alignment explanation
Indices: 74636--74779 Score: 161
Period size: 67 Copynumber: 2.1 Consensus size: 67
74626 TTAGAAGTTT
* * * * * *
74636 TAAATTATT-TTAATATAATTATTATATTATAATATTATTTTTTTATAATATATTATTAATGGTA
1 TAAATTATTATTAACATAATTATTATATTATAATATAAATTTATAATAATATAATATTAAT-GTA
74700 TTA
65 TTA
74703 TAAATTATTATTAACA-AATTATTACTATTATAATTATAAATTTATAAGTAA-ATAATATTAAT-
1 TAAATTATTATTAACATAATTATTA-TATTATAA-TATAAATTTATAA-TAATATAATATTAATG
*
74765 TGTTA
63 TATTA
74770 TAAATTATTA
1 TAAATTATTA
74780 AAATTATCTA
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
67 31 0.47
68 13 0.20
69 19 0.29
70 3 0.05
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (67 bp):
TAAATTATTATTAACATAATTATTATATTATAATATAAATTTATAATAATATAATATTAATGTAT
TA
Found at i:74824 original size:13 final size:13
Alignment explanation
Indices: 74781--74826 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
74771 AAATTATTAA
74781 AATTATCTAATATT
1 AATTAT-TAATATT
74795 AA-TA-TAAT-TT
1 AATTATTAATATT
*
74805 AAGTATTAATATT
1 AATTATTAATATT
74818 AATTATTAA
1 AATTATTAA
74827 ATAACTTGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
10 4 0.14
11 6 0.21
12 4 0.14
13 12 0.43
14 2 0.07
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (13 bp):
AATTATTAATATT
Found at i:74852 original size:23 final size:23
Alignment explanation
Indices: 74810--74862 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
74800 AATTTAAGTA
*
74810 TTAAT-ATTAATTATTAAATAAC
1 TTAATAATAAATTATTAAATAAC
* *
74832 TTGATAATAAATTAATT-AATAAT
1 TTAATAATAAATT-ATTAAATAAC
74855 TTAATAAT
1 TTAATAAT
74863 TATTTCTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 4 0.16
23 18 0.72
24 3 0.12
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
TTAATAATAAATTATTAAATAAC
Found at i:77233 original size:25 final size:23
Alignment explanation
Indices: 77188--77258 Score: 72
Period size: 25 Copynumber: 3.0 Consensus size: 23
77178 ATATAATAAT
*
77188 TTAAT-ATTACTTAATTATATACTA
1 TTAATAATTAATTAA-T-TATACTA
*
77212 TTAATAATTAGTATTAATTATAATA
1 TTAATAATTA--ATTAATTATACTA
*
77237 TTAATAATTAATTAATAATACT
1 TTAATAATTAATTAATTATACT
77259 TATTTAAATA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
23 10 0.25
24 5 0.12
25 20 0.50
26 1 0.03
27 4 0.10
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.48
Consensus pattern (23 bp):
TTAATAATTAATTAATTATACTA
Found at i:77265 original size:25 final size:23
Alignment explanation
Indices: 77163--77258 Score: 72
Period size: 23 Copynumber: 4.0 Consensus size: 23
77153 ATATACTATA
* *
77163 TATTAATCA-TAATTTATATAATAA
1 TATTAATAATTAA-TTA-ATAATAC
*
77187 T-TTAAT-ATTACTTAATTATATAC
1 TATTAATAATTAATTAA-TA-ATAC
* *
77210 TATTAATAATTAGTATTAATTATAA
1 TATTAATAATTA--ATTAATAATAC
77235 TATTAATAATTAATTAATAATAC
1 TATTAATAATTAATTAATAATAC
77258 T
1 T
77259 TATTTAAATA
Statistics
Matches: 58, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
21 1 0.02
22 6 0.10
23 21 0.36
24 6 0.10
25 19 0.33
26 1 0.02
27 4 0.07
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.48
Consensus pattern (23 bp):
TATTAATAATTAATTAATAATAC
Found at i:77315 original size:14 final size:13
Alignment explanation
Indices: 77292--77355 Score: 55
Period size: 13 Copynumber: 5.1 Consensus size: 13
77282 TTATAAAAAT
*
77292 ATATTTATTATTA
1 ATATTTATTATAA
77305 ATATTTGATTATAA
1 ATATTT-ATTATAA
*
77319 ATATTTATAATAA
1 ATATTTATTATAA
*
77332 TTA-TTA--ATAA
1 ATATTTATTATAA
77342 ATAATTTA-TATAA
1 AT-ATTTATTATAA
77355 A
1 A
77356 CAAAAATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
10 5 0.12
11 1 0.02
12 6 0.14
13 19 0.44
14 12 0.28
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (13 bp):
ATATTTATTATAA
Found at i:77654 original size:18 final size:19
Alignment explanation
Indices: 77631--77666 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
77621 TTATAAAATC
77631 AATTAATTA-TTATTTATT
1 AATTAATTATTTATTTATT
77649 AATTAATTATTTATTTAT
1 AATTAATTATTTATTTAT
77667 ATTTGATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
AATTAATTATTTATTTATT
Found at i:77811 original size:23 final size:24
Alignment explanation
Indices: 77764--77812 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
77754 TTTTTGTTTA
*
77764 TATAAATTATTTATTAATAATTAT
1 TATAAATTATTTATTAATAAATAT
77788 TATAAA-TATTTA-TAATCAAATAT
1 TATAAATTATTTATTAAT-AAATAT
77811 TA
1 TA
77813 ATTATCCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 13 0.57
24 6 0.26
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (24 bp):
TATAAATTATTTATTAATAAATAT
Found at i:78309 original size:16 final size:14
Alignment explanation
Indices: 78253--78305 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 14
78243 TACAATTGTA
*
78253 ATAATAATTATAAT
1 ATAATATTTATAAT
*
78267 ATTAATTATTTATATT
1 A-TAA-TATTTATAAT
78283 ATAA-ATTTATAAT
1 ATAATATTTATAAT
78296 ATAATCATTT
1 ATAAT-ATTT
78306 TATATTTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
13 12 0.38
14 1 0.03
15 10 0.31
16 9 0.28
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (14 bp):
ATAATATTTATAAT
Found at i:78320 original size:3 final size:3
Alignment explanation
Indices: 78312--78336 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
78302 ATTTTATATT
78312 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
78337 GAATTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:78508 original size:14 final size:12
Alignment explanation
Indices: 78477--78518 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 12
78467 TAAATAAATA
78477 AATATTATTATT
1 AATATTATTATT
78489 AA-ATTATTA-T
1 AATATTATTATT
*
78499 AATAATATTATT
1 AATATTATTATT
78511 CAATATTA
1 -AATATTA
78519 ATACATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
10 3 0.12
11 13 0.52
12 3 0.12
13 6 0.24
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (12 bp):
AATATTATTATT
Found at i:79027 original size:23 final size:21
Alignment explanation
Indices: 79000--79045 Score: 56
Period size: 23 Copynumber: 2.1 Consensus size: 21
78990 TTTATTAGTC
*
79000 AATTTAACTAATAATAAGATTAT
1 AATTTAAATAAT-ATAA-ATTAT
*
79023 AATTTAAATTATATAAATTAT
1 AATTTAAATAATATAAATTAT
79044 AA
1 AA
79046 AATTTTAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 7 0.33
22 4 0.19
23 10 0.48
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (21 bp):
AATTTAAATAATATAAATTAT
Found at i:79581 original size:14 final size:14
Alignment explanation
Indices: 79564--79601 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
79554 CTTCCTTTTA
79564 TTTT-TATTTGTATT
1 TTTTATATTTG-ATT
*
79578 TTTTATCTTTGATT
1 TTTTATATTTGATT
79592 TTTTATATTT
1 TTTTATATTT
79602 TTTTCCTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.16, C:0.03, G:0.05, T:0.76
Consensus pattern (14 bp):
TTTTATATTTGATT
Found at i:79708 original size:40 final size:38
Alignment explanation
Indices: 79656--79751 Score: 90
Period size: 40 Copynumber: 2.4 Consensus size: 38
79646 TAAACTAAAA
79656 GTTTT-TTCTATTTTAT-ATTTG-AAATTTTTATTCATTTT
1 GTTTTGTT-TATTTTATCATTTGCAAATTTTTATT--TTTT
* *
79694 GTCTTTGTTATATTTTTTCATTTGCTAATTTTTTATTTTTT
1 GT-TTTGTT-TATTTTATCATTTGC-AAATTTTTATTTTTT
79735 GTTTTGTTTAATTTTAT
1 GTTTTGTTT-ATTTTAT
79752 TTAATTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
38 2 0.04
39 4 0.08
40 21 0.44
41 11 0.23
43 10 0.21
ACGTcount: A:0.18, C:0.05, G:0.07, T:0.70
Consensus pattern (38 bp):
GTTTTGTTTATTTTATCATTTGCAAATTTTTATTTTTT
Done.