Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019167844.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_115, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 80870
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.39


File 2 of 2

Found at i:79740 original size:23 final size:24

Alignment explanation


    Indices: 79704--79749  Score: 58
    Period size: 23  Copynumber: 2.0  Consensus size: 24

      79694 GTCTTTGTTA

                                    
      79704 TATTTTTTCATTTG-CTAATTTTT
          1 TATTTTTTCATTTGTCTAATTTTT

                    **     *       
      79727 TATTTTTTGTTTTGTTTAATTTT
          1 TATTTTTTCATTTGTCTAATTTT

      79750 ATTTAATTTT


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  23   12  0.63
  24    7  0.37

ACGTcount: A:0.15, C:0.04, G:0.07, T:0.74


Consensus pattern (24 bp):   
TATTTTTTCATTTGTCTAATTTTT

Found at i:79779 original size:19 final size:17

Alignment explanation


    Indices: 79746--79794  Score: 57
    Period size: 17  Copynumber: 2.9  Consensus size: 17

      79736 TTTTGTTTAA

                             
      79746 TTTTATTTAATTTTTTC
          1 TTTTATTTAATTTTTTC

                        *     
      79763 TTTTATATTAATATTTT-
          1 TTTTAT-TTAATTTTTTC

               *            
      79780 TTTCATTT-ATTTTTT
          1 TTTTATTTAATTTTTT

      79795 TATATATTTT


Statistics
Matches: 28,  Mismatches: 3, Indels: 4
        0.80            0.09        0.11

Matches are distributed among these distances:
  15    6  0.21
  16    2  0.07
  17   11  0.39
  18    9  0.32

ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76


Consensus pattern (17 bp):   
TTTTATTTAATTTTTTC

Found at i:79796 original size:29 final size:27

Alignment explanation


    Indices: 79722--79799  Score: 79
    Period size: 27  Copynumber: 2.8  Consensus size: 27

      79712 CATTTGCTAA

                         *    *        
      79722 TTTTTTATTTTTTGTTTTGT-TTAATT
          1 TTTTTTATTTTTTCTTTTATATTAATT

                  *                      
      79748 TTATTTAATTTTTTCTTTTATATTAATAT
          1 TT-TTTTATTTTTTCTTTTATATTAAT-T

                                    
      79777 TTTTTTCATTTATTT-TTTTATAT
          1 TTTTTT-ATTT-TTTCTTTTATAT

      79800 ATTTTAAAAA


Statistics
Matches: 43,  Mismatches: 4, Indels: 7
        0.80            0.07        0.13

Matches are distributed among these distances:
  26    2  0.05
  27   15  0.35
  28    8  0.19
  29   15  0.35
  30    3  0.07

ACGTcount: A:0.19, C:0.03, G:0.03, T:0.76


Consensus pattern (27 bp):   
TTTTTTATTTTTTCTTTTATATTAATT

Found at i:80597 original size:19 final size:18

Alignment explanation


    Indices: 80575--80614  Score: 53
    Period size: 18  Copynumber: 2.2  Consensus size: 18

      80565 TTTCATGTCC

                         *     
      80575 TTTCATATTTTTTTTTTGT
          1 TTTCA-ATTTTTTCTTTGT

                 *            
      80594 TTTCACTTTTTTCTTTGT
          1 TTTCAATTTTTTCTTTGT

               
      80612 TTT
          1 TTT

      80615 AAAATTTTCT


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  18   14  0.74
  19    5  0.26

ACGTcount: A:0.07, C:0.10, G:0.05, T:0.78


Consensus pattern (18 bp):   
TTTCAATTTTTTCTTTGT

Done.