Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 1 of 93
Found at i:2248 original size:891 final size:890
Alignment explanation
Indices: 4--3406 Score: 4617
Period size: 891 Copynumber: 3.8 Consensus size: 890
1 ATA
* **
4 TTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCGATGAAACGAGCGGGTAGGCGGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGC--G--GGCGGGCACTA
* * *
69 TGCCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
62 CGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
134 TCTTCATATTTCTGCCATGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
127 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
199 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTCGAAACTTTT
192 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * * * *
264 TACGGTTC-AGGATTTTGTTAAAATTTTTTCAGAAGGAGTTCTGTCCCCAAACTTGGTAGATGTG
257 TACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTG
*
328 ATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTT
321 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTT
*
393 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAA
386 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * *
458 AATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTGGAGGTTTGATGAGTGATATGGGGCCAATAT
451 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * * * * * *
523 AAGGGCCAAGTACTAGAACCCATTGCACATCATGTG-GCACACGCCCCACGCCCCCCAATCTTCG
516 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCTC-CCCCCCAATCGTCG
* * * * * * **
587 GAACGCTCAATG-CGCCGGTTAGGTAGCCCCGGCGATGCCCTCCGGCGAATGGTGCCCTAGGCGA
580 GAAC-CCCAATGCCGTCGGTCAGGT-TCTCCGACGATG--CTCCGGCG-ATGGTGCCCCGGGCGA
** * * *
651 AAAAAATTTTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCC-CCGATCCGGTC
640 AAAAAA-TGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCAGATCTGGTC
* * *
715 TGATCTTGCTCTTGAATGAAATCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
704 TGATCTTACACTTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
* * * *
780 CCCCCGAAACGAGCGTACGGGCGCTCAG-CGGCTAGAGGGGTAGGATGCGCAAGCCGGGGATGCA
769 CCCACGAAACGAGCGTACGGGCGCTCAGCCGACCAGAGGGGTAGGATGCGCAAGTCGGGGAT-CA
* * * *
844 CCCGGGTCCACCCCTACGTTGCTACGAT-CTGCTGATCGTAACCCTCGGTTCTGGTCCAATC
833 CTCGGGTCC-CCCCTACG-TGCTGCGATCCTGCTG-TCGTAACCCTCGG-TCCGGTCCGATC
*
905 -TAGACTGGGAATG-ACTCCCGTATGCCTAAGCCAA-CGACGAAACGAGCGGGCGGGCACTACGT
1 TTAGACTGGGAATGAACT-CCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCACTACGT
* *
967 CGGCCAGAGAGGCGGGATGGGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCC
65 CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
1032 TCATATTTTTGCCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
130 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
** *
1097 TTCATGTGAAGTTTTGTGGCAAGACGACTCGTTTTCTATTTTTCACGATATTTGAAACTTTTTAC
195 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * * * *
1162 GGTGT-GGGATTTTTTTTAAATTTTTTCAAAAGGAGTTTTGGCCCCACACTTGGTATACGTGAAC
260 GGT-TCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATC
* * * * * * *
1226 CTCGTATTTTTGTTGGCATGCACAAAAGAATTTACCAAAAAACTCAAAGTGAACAGGATTTTGTG
324 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTG
*
1291 ACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
389 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
1356 CTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
454 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
*
1421 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCTCGCCCCCCAATCATCGGAA
519 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCTC-CCCCCCAATCGTCGGAA
* * * * *
1486 CCCAAATGCTGTCGATCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCGGGCGAAAAAAATG
583 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAATG
* * *
1551 CGGCACCAGCACATGCCCAAGCCCAGCATATGCACTCACAACCCTCAG-TCTGGTCTGATCTTGC
648 CGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCAGATCTGGTCTGATCTTAC
*
1615 ACTTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAACCACGAAA
713 ACTTGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
*
1680 CGAGCGTACGGGCGCTCAGCCGACCAGAGGGGTAGGATGCGTAAGTCGGGGATCACTCGGGT-CC
778 CGAGCGTACGGGCGCTCAGCCGACCAGAGGGGTAGGATGCGCAAGTCGGGGATCACTCGGGTCCC
*
1744 CCCTACGTGCTGTCGATCCTGCTGTTGTAACCCTCGGTCCGGTCCGATC
843 CCCTACGTGCTG-CGATCCTGCTGTCGTAACCCTCGGTCCGGTCCGATC
* *
1793 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGGGCGGGCACTACATC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCACTACGTC
* * *
1858 GGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCAAATCTT
66 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* ** * *
1923 CATATTTTTGCTGTGCCAGTGCCATTTTTATGGCTTGTAAATTCATTCAATGGTCCCTTAAGCCT
131 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
1988 TCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACA
196 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* ** *
2053 ATTCGAGATTTTTTTAAAATTTTTTCAGAAGTTGTTTTGGCCCCACACTAGGTAGACGTGATCCT
261 GTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCT
* * *
2118 TATATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGA
326 TGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGA
*
2183 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATC
390 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
** *
2248 TCAAATGCTCTTTAACAGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
455 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
2313 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCT------CAATCGTCGGAACC
520 GCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCTCCCCCCCAATCGTCGGAACC
* ** * * *
2372 CCAATGCCGTCGGTCAGATTCTCCGGTGATGCTCTGGTGATGGTGCCCCGAGCGAAAAAAAATGC
585 CCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCG-AAAAAAATGC
** ** *
2437 GGCA-CAGCACATGCCTGAGCCCAGCATGTGCACCCGTAACCCTCAG-TCTGGTCCGATCTTACA
649 GGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCAGATCTGGTCTGATCTTACA
* ** ** *
2500 CTGGGAATGAACTTAGTATGCTTAGACT-GGAATGAACTCCATATGCCTAAGTCAACCCACTAAA
714 CT-TGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
* * * *
2564 TGAACGTGCGGGCGCTCAGCC-AGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCAGCT-GGGTC
778 CGAGCGTACGGGCGCTCAGCCGA-CCAGAGGGGTAGGATGCGCAAGTCGGGGATCA-CTCGGGTC
* * * ** * ***
2627 CCCCCTACATGCTGCTGATCCTACTGCCACAACCCTCAGTCCAAACCGATC
841 CCCCCTACGTGCTGC-GATCCTGCTGTCGTAACCCTCGGTCCGGTCCGATC
* *
2678 TTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC--AA--AACGAGCGGGCGGGCACTA
* * * *
2743 CGTCGGCCAGAGAGGCGGGATGCGTAAGCCGTGAATCGTTAGGGTGGTAGGTGGGTTTACGCACA
62 CGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
**** * ** *
2808 TCTTCATATTTCTATTGTGCCAATGCCATTTTTATGGCTTCTAAATTCATTGAATGGTCCCTTAC
127 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
2873 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
192 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
* * *
2938 TACGGTTCGGGATTTTTTTGAAAATTTTTTTAGAAGGAGTTTTGGCCCCA-ACCTTGGTAGATGT
257 TACGGTTCGAGATTTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCACA-CTTGGTAGACGT
* * * *
3002 GATCCTTGTATTTTTTTTGGCATGCTCAAAAAAATTCAGGTAAAAACTCGAAGTGTATAGGATTT
320 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTT
* * *
3067 TGTGACAAATTTGAAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTG
385 TGTGAC-CATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
3132 TAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGGGATAGGGGGCCAC
448 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
3197 TATAAGGGCCAAGTATCAGCACCCATCACGCATCATGTGTGCAA-ACCCCCCGCCCCCCCAATCG
513 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-AACACCCCCCTCCCCCCCAATCG
* * * *
3261 CCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGGGCAAAA
577 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGC-GAA
* * ** * *
3326 AAGAAATGTGGCACCAGCACAAGCCCAAGCCCAGCATGTGCACCTGCAACCCTCGGTTCT-GTCT
641 AA-AAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCAGATCTGGTCT
*
3390 GATCTTACACTTTAATG
705 GATCTTACACTTGAATG
3407 TGGCACTAGC
Statistics
Matches: 2232, Mismatches: 231, Indels: 81
0.88 0.09 0.03
Matches are distributed among these distances:
883 1 0.00
884 196 0.09
885 116 0.05
887 2 0.00
888 14 0.01
889 325 0.15
890 323 0.14
891 514 0.23
892 52 0.02
893 6 0.00
895 471 0.21
896 37 0.02
897 65 0.03
898 13 0.01
899 65 0.03
900 32 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCACTACGTC
GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
GTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCT
TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCTCCCCCCCAATCGTCGGAACCC
CAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAATGCGG
CACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCAGATCTGGTCTGATCTTACACT
TGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGA
GCGTACGGGCGCTCAGCCGACCAGAGGGGTAGGATGCGCAAGTCGGGGATCACTCGGGTCCCCCC
TACGTGCTGCGATCCTGCTGTCGTAACCCTCGGTCCGGTCCGATC
Found at i:5573 original size:26 final size:26
Alignment explanation
Indices: 5534--5586 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
5524 CCGGTCCGAT
5534 CTTACACTAGGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTTCGTATG
* *
5560 CTTAGACTATGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTTCGTATG
5586 C
1 C
5587 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTTCGTATG
Found at i:7590 original size:896 final size:895
Alignment explanation
Indices: 3443--10238 Score: 8625
Period size: 896 Copynumber: 7.6 Consensus size: 895
3433 CATGTACAAA
* * * * *
3443 ATTTTGTCACCATTTGAAAAAAATGTCCCTATGTCAGACATTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
3508 TGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT-AGGGGCC
* * * *
3573 AATACAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCACACACCCCCCCGCTCCCCCAAT
130 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCAAT
* *
3638 CGC-AGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA-GA----------ATGGTGCCCCGGGCG
194 CGCGA-GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCAGGCG
* * *
3691 AAAAAAAATGTGGCACCAGCACATG-CTCGAGCCCAGCATGTGCACCTGCAACCCTCCGTCCGGT
258 AAAAAAAATGTGGCACCAGCACATGCCT-GAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGT
* * *
3755 CCGATCTTGCACTGGGAATGAACTCTCTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTC
322 CCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * * * *
3820 AACCCACGAAACGAGCGTACGGGCATTCAGCTGGCCAGAGTGGCA-GATGCACAAGCCGAGGATC
387 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC
* * * * *
3884 GGTCGGGT--CCCC--C---CT----A--CGAC--C-GCAACCCTCAGTTTGGTCCGATCTTAGA
452 GATCGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTAGTTCGGTCTGATCTTAGA
* * * * *
3933 CTGGGACTGAACTCTGTATGCCTAAGCCAACCGATGAAATGA----GCGGGTGGGCACTACGCCG
517 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCG
* *
3994 ACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
582 ACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
4059 ATATTTTTGCCATGCCAATGCCATTTTTGTGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTT
647 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
4124 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCCATTTTTCACGATTTTTGAAACTTTTTACTG
712 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGG
* * * *
4189 TTTGGGA-TATTTTAAAATTTTTTCAGAAAGAGTTTTGGACCCAAACTTGGTAGACATGATCCTT
777 TTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
4253 GTATTTTTGTTGGCATGCAAAAAAAAATTCACCTAAAAACTCGATGTGTACAGG
842 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* *
4307 ATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * **
4372 TGTAAAAACTTAGATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGAGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG-GCC
* * * * *
4437 AATATAATGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCTGCCCCCCCAATC
130 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATC
* * * * * * ** * * * * *
4502 ACTAGAACCCTAATGCCGTCGATCAAGTTCTCCGGTGATGCTTCAGCGATGGTGCCCCGGGTGAA
195 GCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCAGGCGAA
* * * *
4567 AAAAAATGTGGCACCAGGACATGCAC-AAGCCCAGCATGTGCACCCTCAACCCTTGGTGT-GGTC
260 AAAAAATGTGGCACCAGCACATGC-CTGAGCCCAGCATGTGCACCCGCAACCCTCGGT-TCGGTC
* * *
4630 CGATCTTACACTGGGAATGAACTCCGTACGGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
323 CGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
*** * * * *
4695 ACCCACGAAACGAGCGGGTGGGTGCTCAGCCAGCCAAAGGGGCATGATGCGCAAGCCGGGGATCG
388 ACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* * * ** * *
4760 ATCGGGTCCCCCCCTACGTGCTGTCGATCCTATTATTGCAACCC-TCGATCTGGTCTGATCTTAG
453 ATCGGGT-CCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTAGTTC-GGTCTGATCTTAG
* * * **
4824 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCGATGAAACGAGCAGGCAAGCGGGCACTACGCC
516 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCC
* *
4889 GCCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
581 GACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
4954 CATATTTCTACCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
646 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * * *
5019 TCATGCGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTGGAAACTTTTTATG
711 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACG
** * *
5084 GTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAATTGGTAGACGTGGTCCT
776 GTTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
* * *
5149 TGTATTTTTGTTGGCAAGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGG
841 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* * * * *
5204 ATTTTGAGACCATTTGAAAAAACTGTCCCTATTTCAGACACTTTAATGGCCATTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
5269 TATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCC
* * *
5334 AATATAAGGGCCTAGTACCAGCACCCATCACACATCATGTGCGCACACCACCCCGCCCCCCCAAT
130 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCAAT
* * * *
5399 CGTC-AGAACCCCAATGCCACCGGTCAAGTTCTCTGACGATGCTCCTGTGATGGTGCCCCAGGCA
194 CG-CGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCAGGC-
* * * * * * *
5463 AAAAAAAAAATGTGGCACCAGCACATGCCTGATCCTAGCATGTGCACCCGCAGCTCTCAGTCCGG
257 -GAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGG
* ** *
5528 TCCGATCTTACACTAGGAATGAACT-TCGTATGCTTAGACTATGAATGAACTTCGTATGCCTAAG
321 TCCGATCTTACACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* ** * * * * * * *
5592 TCAGCCCGTGAAACGAGTGTACGGGCACTCAGCCGACCAAAGGGGCAGGATGCCCAAGTCGAGGA
385 TCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * ** * * *
5657 TCGGTCGGGTCCCCCCTGCGTGCTGTCGATCCTACTGCCACAACCC-TCGGTCTGATCTGATCTT
450 TCGATCGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTAGTTC-GGTCTGATCTT
* * * * *
5721 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAAAGAAACGAGCAGACGGGCAGGCACTACG
514 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACG
* * * * * *
5786 CCGGCCAAAGAGGCAGGATGCGTAAGCCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATC
579 CCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
5851 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
644 TTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
5916 CTTCATGTGAAGTTTCATGGCAAGACGA-TCCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
709 CTTCATGTGAAGTTTCATGGCAAGACGACT-CGTTTTCTATTTTTCACGATTTTCGAAACTTTTT
* * *
5980 ACGGTTCGAGATTTTTTTAAAAGTTTTTTCAGAAGGAGTTTCT-GCCCCAAACTTGGTAGACATG
773 ACGGTTTGGGATTTTTTTAAAA-TTTTTTCAGAAGGAGTTT-TGGCCCCAAACTTGGTAGACGTG
* * *
6044 ATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAGCTCGAAGTGTATAGG
836 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
*
6104 ATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
6169 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG-CC
*
6234 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCAATT
130 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATC
* * * * **
6298 GCCAGAACCGCAATGCTGCCGGTCA--------G--G-TGCTCCGGTGATGGGGCCCTGGGCGAA
195 GCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCAGGCG-A
* * * * * * * * *
6352 AAAAAAATGTGGCACCAACACATGCCCGAGCCCAACATGTGCACCCCCCACCCTCAGCTCAGACC
259 AAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGTCC
* * * * *
6417 GATCTTACACCAGGG-GTGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTTAGTCA
324 GATCTTACA-CTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
6481 ACCCACGAAACGAGCGTGA-GGGCGCTCAGTCGGCCAGAGGGGCAAGATGCACAAGCCAGGGATC
388 ACCCACGAAACGAGCGT-ACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC
* ** * * * *
6545 GATC-GGTCCCCCCCTGTGTGCTATCGATCCTACTACTGCAACCCTTGGTCCGATCTGATCTTAG
452 GATCGGGT-CCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTAGTTCGGTCTGATCTTAG
* * * *
6609 ACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGGCAGGCACTACGTC
516 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCC
* *
6674 -ATCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCT
581 GA-CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
6738 TCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCC
645 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * * * *
6803 TTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTGTAATTTTCATGATTTTTGAAACATTTTAT
710 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAC
* * *
6868 GGTTCGGGATTTTTTTAAAATTTTTTCA-AATAGAGTTTTGGCCCCAAACTTGGTAGACGCGATC
775 GGTTTGGGATTTTTTTAAAATTTTTTCAGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
6932 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGCACAGG
839 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* *
6989 ATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATCGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
7054 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTTTCAAGGTTTCATGAGGGATAGGGGCCG
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCC-
* * * * **
7119 TATATAAAGACCAAGTATCAATACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATC
130 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATC
* * *
7184 GTCGA-AACTCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGGTTATGGTGCCCCAGGCGA
195 G-CGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCAGGCGA
* ** **
7248 AAAAAAATGTGGCACCAGCACATGCCTGAGCCTAGTGTGTGCACCTACAACCCTCGGTTCGGTCC
259 AAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGTCC
* ** * * *
7313 GATCTGATGCTGGGAATGAACTCTGTATGCTTAGACTGCGAATGAACTCTGTATGCCTAAGTTAA
324 GATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * *
7378 CCCACGAAACAAGCGTACGGGCGCTTAGTTGGCCAGAGGGGCAGGAAGCGCATGCCGGGGATCGA
389 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA
* * **
7443 TCGGGTCCCCCCTACATGCTGCCGATCCTACTGCTGCAACCCTTAGTTCGGTCCAATCTTAGACT
454 TCGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTAGTTCGGTCTGATCTTAGACT
* *
7508 GTGG-ATGAACTCCGTATGCGTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCACTACGCCGA
519 G-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGA
* * *
7572 CCAGAGAGGCGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCA
583 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
7637 TATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
648 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
7702 ATGTTAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
713 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGT
7767 TTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
778 TTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
7832 TATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAGG
843 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* * * *
7885 ATTTTGTCACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAATC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
7950 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGGGGC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATA-GGGGC
* *
8014 CAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGCACA-CCCCC-GCCCCCCAAT
129 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAAT
* * * *
8077 CGCCAGAACTCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTG-CCCAGGAGA
194 CGCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCAGGCGA
* * * * ** *
8141 AAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCTCAACCCTCGGTCCAATTC
259 AAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGTCC
* * * *
8206 AATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTAAA
324 GATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * * * *
8271 CCCGCGAAACGAGCGTAC-GGTGCTCAACCGGCCAGTGGGGCAGCATGCGTAGGCTGGGGATTGG
389 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA
* * * * *
8335 CCGGGTCCCCCCTGCGTACTGCCAATCCTGCTGC--CATAACC-TACCG-TCTGGTCTGATCTTA
454 TCGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCA-ACCCTTA--GTTC-GGTCTGATCTTA
* * * ** * *
8396 GACTGGGAATGAACTCTGTATGCCGAAGCCGACCGACGAAACGAGCATGCGGGCGAGCACTACGT
515 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGC
** *
8461 CGGGCAGAGAGGCGGGATGCGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
580 CGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
** *
8526 TCATATTTCTATCATGCCAATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
645 TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
8591 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTAC
710 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAC
* * *
8656 GGTTTGGGATTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCC
775 GGTTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
8721 ATGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGG
840 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
8777 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* ** *
8842 TGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGTGC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG-CC
* * **
8907 AATATAGGGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCACACCCCCCCACCCCCCCAAT
130 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCAAT
* * * * ** **
8972 CGTCG-GAACGCCATTGTCACCGGTCAGGTTCTCC-AGCGATGCTCCGACGATGGTGCCCTGGGC
194 CG-CGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGGTGATGGTGCCCCAGGC
* *
9035 -AAAAAAAATGTGGCACCAGCACATTCTCT-AGCCCAGCATGTGCACCCGTAACCCTCGG-TCTG
257 GAAAAAAAATGTGGCACCAGCACATGC-CTGAGCCCAGCATGTGCACCCGCAACCCTCGGTTC-G
* * * *
9097 GTTCAATCTTACACTGGGAGTGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
320 GTCCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
9162 TCAACCCACAAAACGAGCATGCGGGTGCTCAGCCGGCCAGAGGGGTAGGATGCGTAAGCCGAGGA
385 TCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * * * * * * * * *
9227 TC-AGCCAGGTCCCCCCTGTGTGCTACTGATCCTACAGGTACAACCCTCAGATT-GATCTGATCT
450 TCGA-TCGGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTAG-TTCGGTCTGATCT
* * ** *
9290 TAGACTTGGAATGAACTCCGTTTGCCTAAGCCAAATGACGAAACGAGCGGGCGGGCGGGCACTAT
513 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC
9355 GCCG-CCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
578 GCCGACC-AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
9419 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAA
642 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * * *
9484 GCCTTCATGTGAAGTTTCACGGTAAGACGACTCGTTTTTTTATTTTTCATGATTTTCAAAACTTT
707 GCCTTCATGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTCGAAACTTT
*
9549 TTACAGTTTGGGATTTTTTTAAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
771 TTACGGTTTGGGATTTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * * *
9614 GATCCTTGTATTTTTTTTGGCATGCACCAAAAAATTAAGCTAAAAACTCGAAGTGTATAGG
835 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* * *
9675 ATTTTGTGACCATTTGAAAAAAGTATCCGCATTTCAGACACTTTAATCGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
9740 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCG
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCC
*
9805 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTGCCCCCCAATC
130 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATC
** * ** * *
9869 GCTG-GAACCCCAATGTTGCCGGTCAGGTTCTCTGGTGATGCTCCGGCGATGGTGCCCCAGGTG-
195 GC-GAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCAGGCGA
* * * * * *
9932 AAAAAAATGTGGCACTAGCACATGGCC-AAGTCCAGCATTTGCACCCACAACCCTCAG-TCTGGT
259 AAAAAAATGTGGCACCAGCACAT-GCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTTC-GGT
* * * *
9995 CCGATCTTACACTGGGACTGAACTCTCTATGCTTAGACTGGGAATGAACTCCGTATGCCTTAGTT
322 CCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * ** ** * * * *
10060 AACCCATGAAACAAGTGTGTGGGCATTTAGCCGACCAGAGGGGTAGGATACGCATA-CCGGGGAT
387 AACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA-AGCCGGGGAT
* * * * * * * * * *
10124 CGACCGGGTCCCTCCTTGCATGCTGCTGATCCTACTG-TCACAACCCTCAATCCAGTCCGATCTT
451 CGATCGGGTCCC-CCCTGCGTGCTGCCGATCCTACTGCT-GCAACCCTTAGTTCGGTCTGATCTT
* *
10188 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAAGAGCGGGC
514 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
10239 AGGAGCTCAG
Statistics
Matches: 5180, Mismatches: 630, Indels: 211
0.86 0.10 0.04
Matches are distributed among these distances:
863 41 0.01
864 164 0.03
874 161 0.03
875 24 0.00
876 1 0.00
878 4 0.00
880 1 0.00
883 2 0.00
884 5 0.00
885 258 0.05
886 479 0.09
887 31 0.01
888 1 0.00
889 2 0.00
890 5 0.00
891 13 0.00
892 638 0.12
893 140 0.03
894 66 0.01
895 193 0.04
896 1424 0.27
897 433 0.08
898 357 0.07
899 318 0.06
900 418 0.08
901 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCG
CGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCAGGCGAAA
AAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGTCCGA
TCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATC
GGGTCCCCCCTGCGTGCTGCCGATCCTACTGCTGCAACCCTTAGTTCGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCA
GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTTG
GGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
Found at i:8248 original size:26 final size:26
Alignment explanation
Indices: 8209--8261 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8199 CCAATTCAAT
*
8209 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGCGAATGAACTCCGTATG
*
8235 CTTAGACTGCGAATGAACTCCGTATG
1 CTTACACTGCGAATGAACTCCGTATG
8261 C
1 C
8262 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGCGAATGAACTCCGTATG
Found at i:9155 original size:26 final size:26
Alignment explanation
Indices: 9104--9156 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
9094 CTGGTTCAAT
* *
9104 CTTACACTGGGAGTGAACTCTATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
9130 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
9156 C
1 C
9157 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:10051 original size:26 final size:27
Alignment explanation
Indices: 10000--10057 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
9990 CTGGTCCGAT
* *
10000 CTTACACTGGGACTGAACTCTCTATG-
1 CTTAGACTGGGAATGAACTCTCTATGC
10026 CTTAGACTGGGAATGAACTC-CGTATGC
1 CTTAGACTGGGAATGAACTCTC-TATGC
10053 CTTAG
1 CTTAG
10058 TTAACCCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 1 0.04
26 22 0.79
27 5 0.18
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCTCTATGC
Found at i:12334 original size:870 final size:866
Alignment explanation
Indices: 10162--12626 Score: 3348
Period size: 870 Copynumber: 2.8 Consensus size: 866
10152 ATCCTACTGT
* * * * * * *
10162 CACAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
1 CACAACCCTCGATCCAATCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * *
10227 AAAAGAGCGGGCA-GGAGCTCAGCCGGCCAGAGGGGCAGGATGCACCAGCCGAGGATCGATCGGG
66 AAAAGAGCGTG-AGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGATCGGG
* * * * *
10291 TTCCCCTTGCATTCTACCGATCCTGCTATCGTAACCCTCGATC--CGATCCTAGACTGGGAATGA
130 TCCCCCCTGCGTGCTACCGATCCTGCTATCGTAACCCTCG-TCGTCGATCTTAGACTGGGAATGA
* * * *
10354 ACTCTGTTTGCCTAAGCCAACCGACGAAACAAGTGGACGGGCGGGCACTACGTCGGCCAGAGAGG
194 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGACGGGCGGGCACTACGTCGGCCAGAGAGG
* * *
10419 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCATATCTTCATATTTCTGC
259 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGC
* *
10484 CGTGCCAATGCCATTTTTATAGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCATGTGAAGT
324 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* * * *
10549 TTCATGGCAAGATGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACGGTTCGAGATTT
389 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTATGGTTCG-GAATT
* * * *
10614 TTTTAAAAA-TTTTTCAGAAGAAATTTTAGCCCCAAACTTGGTAGATGTGATCCCTGTATTTTTG
453 TTTTAAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
10678 TTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTATGTGACCATTTGAAA
518 TTGGCATGCA-AAAAAAAATTCAGCT-AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAA
* * * * *
10743 AAAGTGTCCCCATTTCAGACACTTTAACGGCTACAGCCAGCAAACCTGTAAAATCTCAAATGCTC
581 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTT
* * *
10808 TTTAAGGGGGTGTGAGTTCTCGAGGTGTGATGAGGCATAGGGGCCAATATAAGGGCCATGTACCA
646 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCATGTACCA
* * * * *
10873 TCGCACATCACACATCATGTGTGCGCACACCCCCCCCGCCCCCAATCGCTGGAACCCCAATGCCA
711 GCACCCATCACACATCATGTGCGCGCACACCCCCCACGCCCCCAATCGCTGGAACCCCAATGCCA
* *
10938 CCGATCAGGTTCTCCGACGATGCTCCAGAGATGGTGCCCCAGGCGAAAAAAAATGTGGCACCAGC
776 CAGATCAGGTTCTCCGACGATGCTCCAGAGATGGTGCCCCAGGCGAAAAAAAATATGGCACCAGC
*
11003 ACATGCTCGAGCCCAGCATGTGCACC
841 ACATGCCCGAGCCCAGCATGTGCACC
* ** ** *
11029 CGCAACCCTCTTTCCAATCTGATCTTGTACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC-
1 CACAACCCTCGATCCAATCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
11093 AAAATGAGCGT-ACGGGTGCTCAGCCGGCCAAAGGGGCAGGTTGCGCTAGCCGAGGATCGATCGG
66 AAAA-GAGCGTGA-GGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGATCGG
* * *
11157 GTCTCCCCCTGCGTGCTGCCGATCCTGCTATCGTAACCCTGGGTCTGATCCATTCTTAGACTGGG
129 GTC-CCCCCTGCGTGCTACCGATCCTGCTATCGTAACCCT-CGTC-G-TCGA-TCTTAGACTGGG
* * * **
11222 AATGAACTCCGTATGCCCTAAGCCAACCGATGAAATGAGTGGGCGGGCGGACACTACGTCAACCA
189 AATGAACTCCGTATG-CCTAAGCCAACCGATGAAACGAGTGGACGGGCGGGCACTACGTCGGCCA
*
11287 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
253 GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
11352 TTTTGCCATGCCAGTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCATG
318 TTTTGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* *
11417 TGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACAATTTTTGAAACTTTATATGGTTCG
383 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTATGGTTCG
**
11482 GAATTTTTTAAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
448 GAATTTTTTAAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
11547 TTTTGTTGGAATGCATAAAAAAATTCAGCTAAGAACTAGAAGTGTACAAGATTTTGTGACCATTT
513 TTTTGTTGGCATGCAAAAAAAAATTCAGCTAA-AACTCGAAGTGTACAGGATTTTGTGACCATTT
* ** * *
11612 GAAAAAAGTGTCCCCATTTCAAACACTTGGATGGCTACTGGCAGCAAGCTTGTAAAATCTGAAAT
577 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAAT
11677 GCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCATGT
642 GCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCATGT
11742 ACCAGCACCCATCACACATCATGTGCGCGCACACCCCCCAC-CCCCCAATCG-TCGGAACCCCAA
707 ACCAGCACCCATCACACATCATGTGCGCGCACACCCCCCACGCCCCCAATCGCT-GGAACCCCAA
* ** * * ** * *
11805 TGTCGTAGGTCAGGTTCTCCGGCGATGCTCTGGGGATGGTGCCCCGGGCGAAAAAAAATATGGCA
771 TGCCACAGATCAGGTTCTCCGACGATGCTCCAGAGATGGTGCCCCAGGCGAAAAAAAATATGGCA
* *
11870 CCAGCACATGCCCGAGCCCAGCATGTGTAGC
836 CCAGCACATGCCCGAGCCCAGCATGTGCACC
* *** *
11901 CATAACCCTCGATCTGGTCTGATCTTACACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACG
1 CACAACCCTCGATCCAATCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * *
11966 AAACGAGCGTGAGGGTGCTCAACCGGCCAGAGAGGCAGGATGCACAAGCTGGGGATCGGTCAGGT
66 AAAAGAGCGTGAGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGATCGGGT
* * * * *
12031 CCCCCCTACGTGCTATCGATCCTACTACCGCAACCCTCAGTGCGGTCTGATCTTAGACTGGGAAT
131 CCCCCCTGCGTGCTACCGATCCTGCTATCGTAACCCTC-GT-C-GTC-GATCTTAGACTGGGAAT
* * * *
12096 GAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACAGGAGGGCACTACGCCGGCCAGAGA
192 GAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGACGGGCGGGCACTACGTCGGCCAGAGA
*
12161 GGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATATTTTT
257 GGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTT
* * * *
12226 GCTGTGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGTCCCATAAGCCTTCTTGTGAA
322 GCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* * * * *
12291 GTTTCAAGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTTGGGAT
387 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTATGGTTCGGAAT
** *
12356 TTTTTTTAAATTTTTTCAGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
452 TTTTTAAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * *
12421 GTTGGCCTGCACAAAAACATTCAGCTGAAACTCGAAGTGTACAGGATTTTGTGACCAATTTGAAA
517 GTTGGCATGCAAAAAAAAATTCAGCTAAAACTCGAAGTGTACAGGATTTTGTGACC-ATTTGAAA
* *
12486 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCCAAACCTGGTAAAATCTCAAATGC
581 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG-CAAA-CTTGTAAAATCTCAAATGC
* * * * * *
12551 TCTTTAAAGGGGG-GATGAGGTTCTTGAGGGTTTGATGAGGGATAGGGGGCAAT-TAAGGGCAAG
644 T-TTTTAAGGGGGTG-TGA-GTTC-TCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAT
12614 GTACCGAGCACCC
705 GTACC-AGCACCC
12627 TTGCACATCA
Statistics
Matches: 1399, Mismatches: 172, Indels: 46
0.87 0.11 0.03
Matches are distributed among these distances:
865 1 0.00
866 4 0.00
867 105 0.08
868 34 0.02
869 27 0.02
870 351 0.25
871 65 0.05
872 231 0.17
873 250 0.18
874 298 0.21
875 33 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (866 bp):
CACAACCCTCGATCCAATCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAAAGAGCGTGAGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGATCGGGT
CCCCCCTGCGTGCTACCGATCCTGCTATCGTAACCCTCGTCGTCGATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGATGAAACGAGTGGACGGGCGGGCACTACGTCGGCCAGAGAGGCG
GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCG
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
CATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTATGGTTCGGAATTTTT
TAAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
GCATGCAAAAAAAAATTCAGCTAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAA
GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCATGTACCAGCACC
CATCACACATCATGTGCGCGCACACCCCCCACGCCCCCAATCGCTGGAACCCCAATGCCACAGAT
CAGGTTCTCCGACGATGCTCCAGAGATGGTGCCCCAGGCGAAAAAAAATATGGCACCAGCACATG
CCCGAGCCCAGCATGTGCACC
Found at i:14162 original size:26 final size:26
Alignment explanation
Indices: 14133--14185 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14123 CCGATCCGAT
* * *
14133 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATAAACACCGTATG
*
14159 CTTAGACTGGGAATAAACACCGTATG
1 CTTACACTGGGAATAAACACCGTATG
14185 C
1 C
14186 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATAAACACCGTATG
Found at i:15954 original size:26 final size:26
Alignment explanation
Indices: 15925--15977 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15915 CCGATTCGAT
15925 CTTACACTGGAAACGAACTCCGTATG
1 CTTACACTGGAAACGAACTCCGTATG
* * *
15951 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGAAACGAACTCCGTATG
15977 C
1 C
15978 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTACACTGGAAACGAACTCCGTATG
Found at i:16864 original size:26 final size:26
Alignment explanation
Indices: 16827--16891 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
16817 TCTGGTCTGA
* *
16827 GAACTCCATATGCTTGGACTAGGAAT
1 GAACTCCGTATGCTTAGACTAGGAAT
*
16853 GAACTCCGTATGCTTAGACTGGGAAT
1 GAACTCCGTATGCTTAGACTAGGAAT
16879 GAACTCCGTATGC
1 GAACTCCGTATGC
16892 CTAAGTCAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.26
Consensus pattern (26 bp):
GAACTCCGTATGCTTAGACTAGGAAT
Found at i:17756 original size:26 final size:26
Alignment explanation
Indices: 17727--17779 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
17717 CTGGTCCGAT
*
17727 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
* *
17753 CTTAGACTGGAAATGAACTTCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
17779 C
1 C
17780 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGAAATGAACTCCGTATG
Found at i:18665 original size:26 final size:26
Alignment explanation
Indices: 18614--18666 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
18604 TCAGTCTACT
*
18614 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACACCATATG
* * *
18640 CTTAGACTGGGAATGAGCACCGTATG
1 CTTACACTGGGAATGAACACCATATG
18666 C
1 C
18667 CGAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACACCATATG
Found at i:19543 original size:26 final size:26
Alignment explanation
Indices: 19514--19566 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
19504 CTGATCCGAT
*
19514 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
19540 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
19566 C
1 C
19567 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:19834 original size:900 final size:894
Alignment explanation
Indices: 13842--25100 Score: 9898
Period size: 895 Copynumber: 12.5 Consensus size: 894
13832 GGGTTTAGGC
*
13842 ACACTTTAATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
13907 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCA
66 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * **
13972 TGTGCACACAAACCCCCCACCTCCCAATCGTCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGGT
131 TGTGCGCAC--ACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * **
14037 GATGCTCTGGGGATGGTTCCCCGGGCGAAAAAAAATAAGGCACCAGCACATGCTCGAGCCCAGCA
194 GATGCTCCGGCGATGGTGCCCCGGG-GAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCA
* * ** * *
14102 TGTGCAGCTGCAACCCTCAATCCGATCCGATCTTACATTGGGAATGAACTCCGTATGCTTAGACT
258 TGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
* * *
14167 GGGAATAAACACCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGA
323 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
** * * ** * *
14232 GGGGCAGGATGCACAAGAC-GGGGATCGACCTGATCCCCCTCTGCATGCTACTGATTCTGCTACC
388 GGGGCAGGATGCACAAG-CTGGGGATCGGTCGGGTCCCCC-CTGTGTGCTGCTGATCCTGCTACC
* * * *
14296 GTAACCCTCTGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
451 GCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
14361 TACAAGCGGGCGGGCGGGCACTACG-TCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
516 AACGAGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
*
14425 GGGTGGTAGGTGGGTTTAGGCACAACTTCATATTTCTGTCC-TGCCAATGCCATTTTTATGGCTT
580 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-CCATGCCAATGCCATTTTTATGGCTT
* * * *
14489 GTAAATTCATACAATGGTCCCATAAGCCTTCATGTGAAGTTTCATGGCAAGACGACACCTTTTCA
644 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* ** * *
14554 ATTTTTCACGATTGTTGAAACTTTTTACGGTTCAAGATTTTTTTTAAATATTTTCAGAAGGAGTT
709 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTT
* *
14619 TTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCAC-AAAAAATTCAGCTA
774 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
*
14683 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
839 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
* *
14739 ACACTTTAATGGCTACTGGCAACAAACCAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** * * *
14804 CTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCGCATAACA
66 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
14869 TGTGTGCACACCCCCACCCACCCCCCCAATCGCCGGAACCCTAATGTCAC-T-GGTCAGGTTCTC
131 TGTGCGCACA--CCC-CCC-GCCCCCCAATCGCCGGAACCCCAATG-C-CGTCGGTCAGGTTCTC
* * * *
14932 CGACGATGCTTCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCT
190 CGACGATGCTCCGGCGATGGTGCCCC-GGGGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCC
* * *
14997 AGCATGTGC-CCCTGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTTCGTATGGTT
254 AGCATGTGCACCC-GCAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTT
* * * * *
15061 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAGTCGA
318 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
** * * *
15126 CCAGAGGGGCAGGATGCGTAAGCTGGGGATCGGT-GGGTCCCCCCCTGTGTGCTACCGATCATGC
383 CCAGAGGGGCAGGATGCACAAGCTGGGGATCGGTCGGGT-CCCCCCTGTGTGCTGCTGATCCTGC
* * *
15190 TACCGCAACCCTCGGTCTGGTCTAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCG
447 TACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * * *
15255 ATGAAATGA----GCGGGCGGGCACTAAGCTGGCTAGAGAGGCGAGATGCGCAAGCCTTGCATTG
512 ACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
* * * *
15316 TTAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGTCGTGCCAATGCCATTTTTATGGC
577 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
* * * *
15381 TTGTAAATTCATACAATGGTCCCGTAAGCCATCATGTGAAGTTTCATGGCAAGATGACTTGTTTT
642 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
15446 CTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTGAAAATTTTTTCAGAAGGAG
707 CTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAG
* * * * *
15511 TTTTGGCCCCAAAATTGGCAGACGTGATTCTTGAATTTTTTTTGGCATGCAC--AAAAATTCAGC
772 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
15574 TAAAAACTCGAAGCGTACAGGGTTTTGTGACCATTTGAAAAAAGTGT-CCCATTTGAG
837 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
* *
15631 TCACTTTAATGGCTACTGGGAGCAAACCTGTAAAATC-CAAAATGCTCTTTAAGGGGGTGTGAGT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGT
*
15695 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
65 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * *
15760 ATGTGGGCATACCCCCAGCCGTCCCCCCAATCACCTGAACCCTAATGCTGTCGGTCAGGTTCTCC
130 ATGTGCGCACA-CCCC--CCG-CCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * ** *
15825 GACGATGCTTCGACGATGGTGCCCCGGGTGAAAAAAAAATATGGCACCAGCAAATGCTCGAGCCC
191 GACGATGCTCCGGCGATGGTGCCCCGGG-G-AAAAAAAATGCGGCACCAGCACATGCTCGAGCCC
* * * * *
15890 AGCATGTGCACCCGCAACCCTCGATCCGATTCGATCTTACACTGGAAACGAACTCCGTATGCTTA
254 AGCATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTA
*
15955 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGC
319 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** *
16020 CAGAGGGGCAGGATACGA-AAGCAT-GGGATCGATCGGGTCCCCCCCTACGTGCTGCCGATCCTG
384 CAGAGGGGCAGGATGC-ACAAGC-TGGGGATCGGTCGGGT-CCCCCCTGTGTGCTGCTGATCCTG
* **
16083 CTATCGCAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
446 CTACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
** * * * * *
16148 GACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAAAGAGAAC-GGATGCGCAAGTCATGGAG
511 GACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAG-GCGGGATGCGCAAGCCGTGGAT
* ***
16212 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTTGTGCCAATGCCATTTTTATG
575 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* * * *
16277 GCTTGCAAATTCATACAATGGTCCCTTAAGTCTTCATGTGAAGTTTCATGGCAAGATGACTTGTT
640 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
16342 TTCTATTTTTC-CTGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTCTTTCAGAAG
705 TTCTATTTTTCAC-GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAG
** * *
16406 GAGTTTTGGCCAAAAAACTTGGTAGTCGTGATCCTTGTATTTTGGTTGGCATGCACAAAAAAATT
769 GAGTTTTGGCC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * * * * *
16471 CCGCTGAAAACTCAAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAG
833 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
16533 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** * * *
16598 AACGAGGTTTGATGAGCGATAGGGGACCAATATAAGGGACAAGTACCAGCACCCATCGCACATCA
66 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* **
16663 TGTGCGCACTCCCCCCTCCCGCCCCCCTCAATCGCTAGAACCCCAATGCCGTCGGTCAGGTTCTC
131 TGTGCGCA---CACCC-CCCG-CCCCC-CAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * * *
16728 CGACG-TGGCTCCGGCGAGGGTGCCTCAGGCGAAAAACAATGCGGCACCAGCACATGCCCGAGCC
190 CGACGAT-GCTCCGGCGATGGTGCC-CCGGGGAAAAAAAATGCGGCACCAGCACATGCTCGAGCC
* * * ** *
16792 CAACATGTGCACCCACAACCCTCGGTCTGGTCTGAGAACTCCATATGCTTGGACTAGGAATGAAC
253 CAGCATGTGCACCCGCAA-CC-C--TC-GGTCT--G-A-TCC-GAT-CTTACACTGGGAATGAAC
*
16857 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG
307 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * * *
16922 TGCTCAGCCAGCCAGAGGAGCAAGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCCTATGTGCTG
372 CGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCCTGTGTGCTG
* * * * *
16987 -TCGATCCTGCTTCCGCAACCCTCTA-TCTGGCCTGATCTTATACTGGGAATGAACTCTGTATGC
437 CT-GATCCTGCTACCGCAACCCTC-AGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
17050 CTAAGCCAACCGATGAAACGAGCGGGCGAGCGGGCACTACACCGGCCAGAGAGGCGGGATGCGCA
500 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCA
*
17115 AGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCCATGCCAATGC
565 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
*
17179 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATTGCAAG
630 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* * * * * ** *
17244 GCAACTCGTTTTCTTTTTTTCACGATTTTTTAAACTTTTTACCGTTCGGGATTTTTGAAAAAATT
695 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTT
* * * * *
17309 TTTCAGAAGCAGTTTTGGCCCCAAACATCGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACA
760 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
17374 AAAAAATTCAGCTAAAAACTCGAAGCGTACAGGATTTTGTGGCCATTTGAAAAATA-TGTCCCCA
825 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA-AGTGTCCCCA
17438 TTTTAG
889 TTTTAG
* * *
17444 ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATGTCAAATGCTCTTTAAAGGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
17509 CTCGAGGTTTGATGAGGCATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGAACATCA
66 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
17574 GGTGCGCACA-----C-CCCCCCAATCGTCGGACCCCCAATGCCGTCGGTCAAGTTCTCTGGCAA
131 TGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
** * * * * * * *
17633 TGCTAAGGCGATGGTACCCAGGGCGAAAAAAAACGTGGCACCAGCACATGCCCAAGCCCAGCCTG
196 TGCTCCGGCGATGGTGCCCCGGG-GAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATG
** * * *
17698 TGCATGCGTAACTCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGG
260 TGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
17763 AAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCGCAGTCGGCCAGAGG
325 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * * * *
17828 GGCAGGATGCGCAAGCCGGGGATCGGTCAGCTCCCCCCATGCGTGCTGCCGATCCTGCTTCTGTA
390 GGCAGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCC-TGTGTGCTGCTGATCCTGCTACCGCA
** * * *
17893 ACCCTCAGTCTGGTCTGGTCTTAGACTGGGAATGAACTCTGTATGCCTTAGGCAACCGACGAAAC
454 ACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* * *
17958 GAGCAGGCGAGCGGGCACTATG-TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA-CGGATAGG
519 GAGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC-GATAGG
* *
18021 GTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
582 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
* * *
18086 AAATCATACAATGGTCCCTTAAGCCTTAATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
647 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
18151 TTTCACGATTTTTAAAACTTTTTACGATTCAGGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTG
712 TTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* *
18216 GCCCTAAACTTGGTAGACATGAT-CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
777 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * * *
18280 ACTCAAACTATACAGGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTTAG
842 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
18333 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
18398 CTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
66 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * **
18463 TGT--GCACA-----CACCCCCCAATTGTCGGAATCCCAATGCCGTCGATCAGGTTCTCCGGTGA
131 TGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * * *
18521 TTCTCCGACGATGGTGCCCCGGGCG-AAAAAAATACGGCACCAGCAAATGCCCGAGCCCAGCATG
196 TGCTCCGGCGATGGTGCCCCGGG-GAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATG
* * * * *
18585 TACACCCGTAACCCTCGGT-TCAGT-CTACTCTTACACTGGGAATGAACTCCATATGCTTAGACT
260 TGCACCCGCAACCCTCGGTCTGA-TCCGA-TCTTACACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * * * *
18648 GGGAATGAGCACCGTATGCCGAAGTCAACCCACGAAATGAGAGTGCAGGTGCTCAGTCGGCCAGA
323 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * ** * *
18713 GGGGCAGGATGCGCAAG-TCGGGGATAGGCCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTACT
388 GGGGCAGGATGCACAAGCT-GGGGATCGGTCGGGTCCCCC-CTGTGTGCTGCTGATCCTGCTACC
* * *
18777 GCAACCCTCAGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
451 GCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
18842 AACGAGCTGGCGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGCAAGCTGTGGATCGATAG
516 AACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
* *
18907 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTCTTATGGCTTGT
581 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
* * *
18972 AAACTCATACAATGGTCCCTGAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
646 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** **
19037 TTTTCACGATTTTCAAAAACTTTTTACAATTCGGGATTTTTTTAAAATTTTTTCAGAAGGA-TTT
711 TTTTCACGATTTT-TGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTT
*
19101 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAA
775 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
19166 AAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
840 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
* * * * *
19221 ACACTTTAATGGCTACTGGTAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGTGTCTAAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
19286 CTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCGAAGTACCAACACCCATCGCACATCA
66 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
19351 TGTGGGCACACCCCCCCTCGCCCCCTCAATCGCCAGAACCCCAATGTCGTCGGTCAGGTTCTCCG
131 TGTGCGCACA--CCCCC-CGCCCCC-CAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* * * * *
19416 GCGATGCTCCGGTGATGGTACCCTGGGGAAAAAAAAATGCGGCACCAGCACATGCTTGAGCCCAG
192 ACGATGCTCCGGCGATGGTGCCCCGGGG-AAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
*
19481 CATGTGCACCCACAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
256 CATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* * * *
19546 CTGGGAATGAACTCCATATGCCTAAGTCAACCCAC-AAAGTGAGCGTGCGGGTGCTCAACCGGCC
321 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CGAGCGTGCGGGCGCTCAGCCGGCC
* ** * * *
19610 AGAGGGGCAGGATGCACAAGCTGAGGATC-AACTAGGTCCTCCCCTGTGTGCTGCTGATCTTGTT
385 AGAGGGGCAGGATGCACAAGCTGGGGATCGGTC-GGGTCC-CCCCTGTGTGCTGCTGATCCTGCT
* * * * * * *
19674 GCCACAACCATCGGTCCGGTCTGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGA
448 ACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * *
19739 CGAAACGAGTGGGTGGGCGGGCACTATGCTGGCCAGAGAGTCGGGATGCGTAAGCCGTGGATCGA
513 CGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* *
19804 TAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTATGGCT
578 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
** *
19869 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTGGTGGCAAGACAACTCGTTTTC
643 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * *
19934 TATTTTTCACGATTTTTGAAACTTTTGACAGTTCGAGACTTTTTTAAAATTTTTTCAGAAGGAGT
708 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGT
*
19999 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCT
773 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
*
20064 AAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
838 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
* * * *
20121 ACACATTAATGGCTACTGGTAGAAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
20186 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACAT-A
66 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** * * **
20250 TTGTGTGCACACCCCCCG-CCCCCAATCGTCGGAACCCCAATGTGGTCGGTCAGGTTTTTCGGTG
131 -TGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * * * * * *
20314 ATCCTTCGACGATGGTGTCCCGGGCAAAAAAAAATACGGCACCAGCACATGCTTGAGCCCAGCAT
195 ATGCTCCGGCGATGGTGCCCCGGG-GAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCAT
* * * * * *
20379 GTGCACTCGCAACCCTCAGTCTGGTCTGATCTTACACTGGGAATCAACTCCATATGCTTAGACTG
259 GTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTG
* *
20444 GGAATCG-ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGTGGGCGCTCAGCCGGCCAGA
324 GGAAT-GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* ** * * * * *
20508 GGGGCAGGATGCATAAGCCAGGGATCGGTCGGGTCTCCTCCAGTGTGCTGCCGATCCTGTTACCA
388 GGGGCAGGATGCACAAGCTGGGGATCGGTCGGGTC-CCCCCTGTGTGCTGCTGATCCTGCTACCG
* * * *
20573 TAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGGCAATCGACGAA
452 CAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
20638 ACGAGCGGGCGGGCGGACACTACG-TCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
517 ACGAGCGGGCGGGCGGGCACTACGCT-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
* **
20702 GGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCCATGCCAATAACATTTTTATGGCTTGT
581 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
* * *
20767 AAATTCATACAATTGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTATAT
646 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* ** * * *
20832 TTTTCACAATTTTCAAAACTTTTTATGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGATTTTT
711 TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
** * * *
20897 GGCCCCAAACTTTTTAGACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAGAATTTAGCTAAA
776 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
20962 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTTAG
841 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
* * * *
21016 ACACATTAATGGCTGCTGGTAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * * * * *
21081 CTCAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAGGTATCAGAACCCATCGTAATATA
66 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG-CACATC
* **** ** * ** *** *
21146 AGGTCCGATCCGATCTTACACTCGGAATGAACTCCATAT-G-CTTAGACTGGGAATGAACTCGTA
130 A--T--G-TGCG--C--ACAC-C-CCCCGCCCCCCA-ATCGCCGGA-AC-CCCAATG--C-CGTC
* * * * * * * * * * ** *
21209 TGCCTAAG-TCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGG--GCAAGATGC-
178 GGTC-AGGTTC-TCCGACG--AT--GC-T-CCGGCGAT-GGT-GCCCCG-GGGAAAAAAAATGCG
* ** * *
21270 GCAAGCCGAGGATCA-G-TC-AGACCCCCCTATGTGCTA--C-CAATCCT---ACTG--CCG--C
232 GC-A-CC-AGCA-CATGCTCGAG-CCCAGC-ATGTGC-ACCCGCAACCCTCGGTCTGATCCGATC
* * **** * * * *
21322 --AGCCCTCGG--TCCGGTCTG-AT-CTTAGACT-GCAATGAACTCCGTATGCCTAAGCCAACCG
290 TTA-CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
***** ** * ** * *
21380 ACGAAACGA--------GC-C-CAG--GG-CA-AAAAAAAATATGGCACCAGC---ACAT-GCTT
354 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT-GCACAAGCTGGGGATCGGTC
* * ** * * * * *
21427 GAG----CCCAGCATG-TGC--A-----C--CCGTAACCCTCAGTCTGATCTGATCTTACACCGG
418 GGGTCCCCCCTGTGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGG
* * * * * * * *
21478 GAATGAACTCCATATGCCTAAGTCAACCCA-TAAA--A-TGAGCGTGCGGGCACT-CAGCCGGCC
483 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC-GCTGGCC
* ** * ** * * * * ****** * *
21538 AGAGGGGTAGGATGCGTAAGTAGGGGATCAATCGAGTCCCCCCCTGCGTGCT--GC-CGATC--C
547 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT-GGTAGGTGGGT-TTAGGCAC-ATCTTC
* ** * * * * * *** ** * *
21598 ----TGCTGCC--G-CAACCCTCAATTTGATACGATCT-TAGATT--GGGAATGAACTCCGTATG
609 ATATTTCTGCCATGCCAATGC-CATTTTTAT-GGCT-TGTAAATTCATACAATGGTC-CCTTAAG
* *** * *** * * *** * ***** ** *
21653 CCTAAGCCAACCGACGAAACGAGCGGGCGAG-CGGGCACTACGATGGCCAAAGAGGCGGGA--TG
670 CCT---TCATGTGAAGTTTC-A--TGGCAAGAC--G-ACT-CG-TTTTCTATTTTTCACGATTTT
* * ** * * * * * * **
21715 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
724 TG-AA-AC-T---T-TTTACGGT--T-CG-GGATTT-------TTTTAAAATTT-TTTCA-G--A
* * *** ** * * * **
21780 ATGCCATTTTTATGGCTTGTAAA-TTCATACA-ATGGTCCCTTAAGCCTTCATGTGAGGTTTCAT
767 A-G-GA-GTTT-TGGC-CCCAAACTTGGTAGACGTGAT-CCTT--G---T-AT-T----TTTGTT
* *** *** * * ** * * *
21843 GGCAAGACGACTCGCTTTCTATTTTTCATGATTTTAGAAACTTTTTACG-GTTC-GAGATTTTTT
815 GGCATG-C-A----C--AAAAAAATTCA-G---CTAAAAAC--TCGAAGTGTACAG-GATTTTGT
* ** * ** * *
21906 TAAAATTTTTTCAGAAGTAGTTTTGGCCCCACACTTGGTAG
865 GACCA---TTTGA-AAAAAG---T-GTCCC-CA-TT-TTAG
*** ** * ***
21947 ACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAACTCGCAGTGTACAGGAT-T-TTGTGA
1 AC---A--CTT-TAATGGCTACTGGCA-G--C----AAA--C-C--TGTA-A-AATCTCAAATG-
**** * * * ** * ** ** *
22009 C-CATTTGAAAAAAGTGTCCCCA-TTTTAGACACTTTAAT-AGCTACT-GGCAGCAAACCTATAA
45 CTC-TTT-AAGGGGGTGT---GAGTTCTCGA-GGTTTGATGAGGGA-TAGGGGGCCAA--TATAA
*** * * ***** ** * * * ****** **
22070 AATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTTG-AGGT-TTGATGAG-AGATAGGGGGCCAAT
101 GGGC-CAAGTAC-C----A--GCACCCA--TC--GCACATCATG-TGCGCACACCCCCCGCC-CC
** ** * * * * ** * * ** * ** *****
22132 ATAAGGGCCAAGTACCAGC-A-CCCGTC-GTACATCTTGTGCGCAC-ACCCCCCACCCCCCAAT-
152 CCAATCGCC-GGAACC-CCAATGCCGTCGGT-CAGGTTCTCCG-ACGATGCTCC-GGCGATGGTG
* *** * *
22192 CTCC---GAAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTGCGGCGATGGTGCCCCGAG
212 CCCCGGGGAAA-AAAAATG-CGGC-ACCA-G-----C-AC-ATGCT----CGA----G-CCC-AG
* * ** * *
22254 CAAAAAAAAAAGTGGCACCAGCACATGCTCGAGCCTAGCATGTGCACCCGCAACCTTCGGTCTGG
256 C--------ATGT-GCACCCGCA-ACCCTCG-G--T--C---TG-ATCCG--A---TC--T-T-A
* * * * * *
22319 TCCGATCTTACACTGGGACTGAAATCCATATGCTTAGACTAGGAATAAACTCCATATGCCTAAGT
293 ----------CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* *
22384 CAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGAGGAT
348 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCTGGGGAT
* * * * *
22449 TGGTCGGGTCCCCCC--T-TGC-G-TG---CTG-T--CGTAACCATCAGTCTGATCCAATCTTAG
413 CGGTCGGGTCCCCCCTGTGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCTGGTCTAATCTTAG
* * * * * *
22503 ACTAGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCAGGCACTACAC-
478 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCT
* * *
22567 CGCCAGAGAGGCGGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
543 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
22632 CATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTT
608 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * **
22697 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTTGAAACTTTTTAAT
673 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACG
* * * *
22762 GTTCGGGA------T----TTTTTT-AGAAGGATTTTTGGCCCCACACTTGGTAGACATAATCCT
738 GTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
*
22816 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
803 TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
*
22881 CATTTGAAAAAAGTGTCCCCATTTCAG
868 CATTTGAAAAAAGTGTCCCCATTTTAG
* *
22908 ATACTTCAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
22971 CTTGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
66 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
23036 TGTGTGCACACCCCCCCCCGCCCCAAAT---CGGAACCCTAATGTCGCCAGTCAGGTTCTCCGAC
131 TGTGCGCACACCCCCCGCC-CCCC-AATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * * *
23098 GATGCTCGGGCAATGGTGCCCCGGGCGAAAAAAAATGTGACACCAGCACATGACT-GAGCCCATC
194 GATGCTCCGGCGATGGTGCCCCGGG-GAAAAAAAATGCGGCACCAGCACATG-CTCGAGCCCAGC
* *
23162 ATGTGCACCCGCAACCCTCGATCCTG-TCTGATCTTACACTGGGAATGAACTCCATATGCTTACA
257 ATGTGCACCCGCAACCCTCGGT-CTGATCCGATCTTACACTGGGAATGAACTCC----G--T--A
*
23226 CTGGGAATAAACTTCATATGCTTACACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAA
313 -T--G------C-T--TA-G-----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
23291 CGAGCGTGCAGGCTG-TCAGCCGGCCAGAGGGGCAGGATGCAAAAG-TCAGGGATCGATCGAGTG
360 CGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCT-GGGGATCGGTCGGGTC
** * * *
23354 CCCCCT-TGCATGCTG-TCGATCCTATTACCGTAACCCTCAGTCTGATCTAATCTGAGACTGGGA
423 CCCCCTGTG--TGCTGCT-GATCCTGCTACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGA
* * * * ** *
23417 ATAAACTCCGTATGCCTAAGCGAACCGACGAATCGAGAGAACGGGCGGGCACTACGCCGGCCAGA
485 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGA
* * * *
23482 GAGGCGGGATGCACAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTCGGCACATTCTTCATATT
550 GAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA-TCTTCATATT
23547 TGCTGCCATGCCAATGCCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
614 T-CTGCCATGCCAATG-CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* *
23611 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTT
677 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
*
23676 GGGA-TTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCTCCAAA-TTGGTAGACGTGATCCTTGT
742 GGGATTTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
23738 A-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA-CAT
806 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
**
23801 TTGAAAAAAGTGTCCCCATTCCAG
871 TTGAAAAAAGTGTCCCCATTTTAG
*
23825 ACACTTTAATGGCTACTGCCAGCAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
1 ACACTTTAATGGCTACTGGCAGC-AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
23890 TCTCGAGGTTTG-TGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
65 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
23953 ATGTGCGCACACCCCCCACCCCCCAATCGTCC-GAACCCCAATG-CG-CGGTCAGGTTCTCCG--
130 ATGTGCGCACACCCCCCGCCCCCCAATCG-CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * *
24013 GATG---C--CGATGGTGCCCC-GGCAAGAAAAATGCAGCACCAGCACATGC-CGAGCCCAGCAT
194 GATGCTCCGGCGATGGTGCCCCGGGGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCAT
* * * * * * *
24071 GTACACTCGTAACCCTCGGTC-CAGTCTGATCTTATACTGGGAATGAACTCTGTATGCTTAGACT
259 GTGCACCCGCAACCCTCGGTCTGA-TCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * *
24135 GGGAATGAACTCTGTATGCCTAAGTTGAA-CCATGAAACGAGCGTACGGGCAG-TCAGCCGACTA
323 GGGAATGAACTCCGTATGCCTAAG-TCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGGCCA
* *
24198 GAGGGGCAGGATGCACAAG-TCGGGGATCGGTCGGGTCCCCCCTTGCGTGCTG-TCGATCCTACT
386 GAGGGGCAGGATGCACAAGCT-GGGGATCGGTCGGGTCCCCCC-TGTGTGCTGCT-GATCCTGCT
** * * * * * * *
24261 ACCATAACACTCAGTCCGATCTAATCTGAGACTGGGAACGAACTTCGTATGCCTATGCC-A--G-
448 ACCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* ** *
24322 C----C-A------------G----A-----G---G-GA--CGGGATGCACAAGCTATCGATCGA
513 CGAAACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
24355 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCCATGCCAATGCCATTTTTATGGCT
578 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
*
24419 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTT
643 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
*
24484 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGG-GT
708 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAG-
24548 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
772 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
24613 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
837 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
24671 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
24735 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
66 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
24800 TGTGCGCACACCCCCTGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTT-TCTCGACG
131 TGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC-CGACG
**
24864 ATGCTCCAACGATGGTGCCCCGGGTGAAAAAAAAAATGC-GCACCAGCACATGCCTCGAGCCCAG
195 ATGCTCCGGCGATGGTGCCCCGGG-G--AAAAAAAATGCGGCACCAGCACATG-CTCGAGCCCAG
* * * *
24928 CATGTGCA-CCGTAACCCTC-GTCCGGTCAGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
256 CATGTGCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* * *
24991 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AACGAGCGTGCGAGCTCTCAGCCAGCCA
321 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * *
25055 GAAGGGGCAGGATGCGCAAGC-CGGGATCGGTC-GGTCCCCCTTGTGT
386 G-AGGGGCAGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCCTGTGT
25101 CACAGGTTGA
Statistics
Matches: 8483, Mismatches: 1344, Indels: 1112
0.78 0.12 0.10
Matches are distributed among these distances:
841 3 0.00
842 123 0.01
843 33 0.00
844 55 0.01
845 144 0.02
846 127 0.01
847 6 0.00
848 13 0.00
850 4 0.00
851 1 0.00
853 1 0.00
855 16 0.00
856 11 0.00
857 35 0.00
858 97 0.01
859 21 0.00
860 17 0.00
861 7 0.00
862 16 0.00
863 7 0.00
864 7 0.00
865 6 0.00
866 1 0.00
867 1 0.00
868 5 0.00
869 18 0.00
870 54 0.01
871 8 0.00
872 7 0.00
873 5 0.00
874 56 0.01
875 1 0.00
876 1 0.00
877 7 0.00
878 2 0.00
879 1 0.00
880 3 0.00
881 163 0.02
882 4 0.00
883 6 0.00
884 6 0.00
886 6 0.00
887 477 0.06
888 450 0.05
889 385 0.05
890 178 0.02
891 9 0.00
892 207 0.02
893 235 0.03
894 371 0.04
895 867 0.10
896 32 0.00
897 146 0.02
898 343 0.04
899 461 0.05
900 686 0.08
901 65 0.01
902 139 0.02
903 57 0.01
904 59 0.01
905 11 0.00
906 36 0.00
907 154 0.02
908 96 0.01
909 25 0.00
910 132 0.02
911 232 0.03
912 155 0.02
913 180 0.02
914 118 0.01
915 11 0.00
916 7 0.00
917 68 0.01
918 127 0.01
919 99 0.01
920 61 0.01
921 17 0.00
922 5 0.00
923 13 0.00
924 22 0.00
925 10 0.00
926 10 0.00
927 7 0.00
928 10 0.00
929 2 0.00
930 3 0.00
931 5 0.00
934 2 0.00
935 5 0.00
936 17 0.00
937 8 0.00
938 14 0.00
939 6 0.00
940 8 0.00
941 6 0.00
942 9 0.00
943 12 0.00
944 1 0.00
945 3 0.00
946 5 0.00
947 1 0.00
948 12 0.00
949 13 0.00
950 9 0.00
952 17 0.00
953 13 0.00
954 12 0.00
955 4 0.00
956 12 0.00
957 4 0.00
958 2 0.00
959 4 0.00
960 1 0.00
961 4 0.00
962 4 0.00
963 2 0.00
964 8 0.00
965 5 0.00
966 3 0.00
968 6 0.00
969 8 0.00
971 3 0.00
972 12 0.00
973 6 0.00
976 1 0.00
977 6 0.00
979 1 0.00
980 2 0.00
983 4 0.00
984 1 0.00
985 9 0.00
989 1 0.00
990 3 0.00
991 1 0.00
994 1 0.00
995 2 0.00
996 13 0.00
997 7 0.00
998 1 0.00
999 1 0.00
1000 2 0.00
1002 1 0.00
1003 1 0.00
1004 1 0.00
1005 8 0.00
1007 3 0.00
1008 2 0.00
1009 9 0.00
1010 34 0.00
1018 2 0.00
1019 1 0.00
1020 3 0.00
1022 4 0.00
1023 10 0.00
1024 11 0.00
1025 2 0.00
1026 9 0.00
1027 9 0.00
1028 4 0.00
1030 104 0.01
1031 22 0.00
1032 18 0.00
1033 79 0.01
1034 29 0.00
1035 14 0.00
1036 2 0.00
1037 2 0.00
1038 12 0.00
1039 12 0.00
1040 14 0.00
1041 30 0.00
1042 18 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (894 bp):
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
TGCTCCGGCGATGGTGCCCCGGGGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
GCACCCGCAACCCTCGGTCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
GCAGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCCTGTGTGCTGCTGATCCTGCTACCGCAAC
CCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
GCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
Found at i:20445 original size:26 final size:26
Alignment explanation
Indices: 20409--20461 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20399 CTGGTCTGAT
20409 CTTACACTGGGAATCAACTCCATATG
1 CTTACACTGGGAATCAACTCCATATG
* * *
20435 CTTAGACTGGGAATCGACTCCGTATG
1 CTTACACTGGGAATCAACTCCATATG
20461 C
1 C
20462 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATCAACTCCATATG
Found at i:23230 original size:26 final size:26
Alignment explanation
Indices: 23194--23266 Score: 128
Period size: 26 Copynumber: 2.8 Consensus size: 26
23184 CCTGTCTGAT
23194 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
23220 CTTACACTGGGAATAAACTTCATATG
1 CTTACACTGGGAATGAACTCCATATG
23246 CTTACACTGGGAATGAACTCC
1 CTTACACTGGGAATGAACTCC
23267 GTATACCTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:24130 original size:26 final size:26
Alignment explanation
Indices: 24101--24153 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24091 CCAGTCTGAT
*
24101 CTTATACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
24127 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
24153 C
1 C
24154 CTAAGTTGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:24988 original size:26 final size:26
Alignment explanation
Indices: 24959--25011 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24949 CCGGTCAGAT
24959 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
24985 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
25011 C
1 C
25012 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:31712 original size:25 final size:26
Alignment explanation
Indices: 31684--31735 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
31674 CTGGTCCGAT
31684 CTTACACT-GGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
31709 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
31735 C
1 C
31736 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:32591 original size:26 final size:26
Alignment explanation
Indices: 32555--32607 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
32545 CTGGTCTGAT
32555 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
32581 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
32607 C
1 C
32608 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:32748 original size:876 final size:880
Alignment explanation
Indices: 30937--32787 Score: 3207
Period size: 876 Copynumber: 2.1 Consensus size: 880
30927 GTGACACCTG
** * *
30937 CGTGCTGTCGATCCTGCTGTCGTAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCTG
1 CGTGCTGTCGA-CCTGCTGTCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCG
*
31001 TATGCCTAAGCCAACCGACGAAACGAGTGGGCGAGGCACTACGCCGGCCAGAGAGGCGGGATGCG
65 TATGCCTAAGCCAA-CGAC-AAACGAGCGGGCGAGGCACTACGCCGGCCAGAGAGGCGGGATGCG
31066 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAAT
128 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAAT
31131 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
193 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
31196 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAAT
258 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAAT
31261 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
323 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
*
31326 CAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCC
388 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCC
31391 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
453 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
31456 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
518 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** ** *
31521 CACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
583 CACATCATGTGCGCACACCCCCCGCCCCCCAATCACCCAAACCCCAATGCCGCCGGTCAGGTTCT
*
31586 CCGACGATGCTCCGACGATGGTGCCCCGGGAAAAAAAATGTGGCACCAGCACATGCCGAGCCCAG
648 -CGACGATGCTCCGACGATGGTGCCCCGGGAAAAAAAATGCGGCACCAGCACATGCCGAGCCCAG
31651 CATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGAATGAACTCCGTATGCTTAGAC
712 CATGTGCA-CCGCAACCCTCGGTCTGGTCCGATCTTACACTGGAATGAACTCCGTATGCTTAGAC
*
31716 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
776 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAG
*
31781 AGGGGCAGGATGCACAAGCCGGGATCGTCGGGTCCCCCCT
841 AGGGGCAGGATGCACAAGCCGGGATCGACGGGTCCCCCCT
* **
31821 -GTG-TGTGCTGATCTGCTACCACAACCCTC-AGTCTGGT-C-ATCTTAGACTGGGAATGAACTC
1 CGTGCTGT-C-GACCTGCTGTCACAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAACTC
31881 CGTATGCCTAAGCCAACGA-AAACGA-CGGGCG-GGCACTA-G-CGGCCAGAGAGGCGGGATGCG
63 CGTATGCCTAAGCCAACGACAAACGAGCGGGCGAGGCACTACGCCGGCCAGAGAGGCGGGATGCG
31941 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTCTGCCATGCCAA
128 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT-TGCCATGCCAA
32006 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
192 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
32071 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAA
257 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAA
32136 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGC
322 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
32200 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTA-TGGATTTTGTGACCATTTGAAAAAAGTGTCCC
387 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
32264 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGG
452 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
32328 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
517 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
32393 GCACATCATGTGCGCACACCCCCCGCCCCCCAATTCACCCAAACCCCAATGCCGCCGGTCAGGTT
582 GCACATCATGTGCGCACACCCCCCGCCCCCCAA-TCACCCAAACCCCAATGCCGCCGGTCAGGTT
32458 CT-GACGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCGAGCC
646 CTCGACGATGCTCCGACGATGGTGCCCC-GG-GAAAAAAAATGCGGCACCAGCACATGCCGAGCC
*
32522 CAGCATGTGCA-C-CAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCTTA
709 CAGCATGTGCACCGCAACCCTCGGTCTGGTCCGATCTTACACT-GGAATGAACTCCGTATGCTTA
32585 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAACGAGCGTGCAGGCGCTCAGCCGG
773 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCAGGCGCTCAGCCGG
* *
32650 CCAGAGGGGCAGGATGCGCAAGCGGGGATCGACGGGTCCCCCCT
837 CCAGAGGGGCAGGATGCACAAGCCGGGATCGACGGGTCCCCCCT
* *
32694 ACGTGCTGTCGACCTTGCTGTCACAACCTTCGATCTGGTCCGA-CTTATACTGGGAATGAACTCC
1 -CGTGCTGTCGACC-TGCTGTCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCC
32758 GTATGCCTAAGCCAACCGACGAAACGAGCG
64 GTATGCCTAAGCCAA-CGAC-AAACGAGCG
32788 ATCTGGTCCA
Statistics
Matches: 920, Mismatches: 26, Indels: 46
0.93 0.03 0.05
Matches are distributed among these distances:
871 28 0.03
872 85 0.09
873 170 0.18
874 165 0.18
875 137 0.15
876 237 0.26
877 11 0.01
878 5 0.01
879 12 0.01
880 2 0.00
881 3 0.00
882 40 0.04
883 20 0.02
884 5 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (880 bp):
CGTGCTGTCGACCTGCTGTCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACGACAAACGAGCGGGCGAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCGCCCCCCAATCACCCAAACCCCAATGCCGCCGGTCAGGTTCTCGA
CGATGCTCCGACGATGGTGCCCCGGGAAAAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATG
TGCACCGCAACCCTCGGTCTGGTCCGATCTTACACTGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGG
CAGGATGCACAAGCCGGGATCGACGGGTCCCCCCT
Found at i:34909 original size:870 final size:869
Alignment explanation
Indices: 33274--35360 Score: 2764
Period size: 868 Copynumber: 2.4 Consensus size: 869
33264 ATTTTTTCAA
* * *
33274 ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATTTCAAATGCT-TTTAAGAGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** * *
33338 CTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCA
66 CTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
* * *
33403 TGTGGGCACACCCCC-CCG-CCCCCCAATCGTCGGAACCCCAATGCTGCCTGTCAGGTTCTCCGA
131 TGTGCGCACACCCCCTCCGCCCCCCCAATCGTC-GAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * ** * *
33466 GGATACTCCAATGATGGTGCCCCGAGCGAAAAAAAAATATGGCACCAGTACATGCCTGAGCCCAG
195 CGATGCTCTGATGATGGTGCCCCG-GCG-AAAAAAAATATGGCACCAGCACATGCCCGAGCCCAG
* *
33531 CATGTGCACCCGTAACCCTCGGTCTGGTCCGATCTTAAACTAGGAATGAACTTCGTATGCTTAGA
258 CATGTGCACCCGCAACCCTCGGTCTGGTCTGA---T---CT-----T--A---C--A--C-T---
* *
33596 GAGGGAATGAACTCCGTATGCCTAGGTCAACCCACAGAACGAGCGTGCGGGCGCTCAGCAAACAA
299 --GGGAATGAACTCCGTATGCCTAAGTCAACCCACAGAACGAGCGTGCGGGCACTCAGCAAACAA
* * ** *
33661 GAGGGGCATGATGCACAAGCCGAGGATCGGTCGGGTCCCTTTCTGCATGCTGTCGATCCTACTAT
362 GAGGGGCAGGATGCACAAGCCGAGGATCGATCGGGTCCCTCCCTACATGCTGTCGATCCTACTAT
* * *
33726 CGCAACTCTCGATCCAATTTGATCCGATCTTAGACTGGAATGAACTCTGTATGCCTAAGCCAACC
427 CGCAACACTCGATCC----TGATCCGATCTTAGACTGGAATGAACTCCGTATACCTAAGCCAACC
* *
33791 GACGAAATGAACGGGCGAGCGGGCACTACGCCAGCCAGAGAGGCAGGATACGCAACCCATGGATC
488 GACGAAACGAACGGGCGAGAGGGCACTACGCCAGCCAGAGAGGCAGGATACGCAACCCATGGATC
*
33856 GATAGGGTGGTAGGTCAGTTTAGGCACATCTTCATATTTTTGATGTCCCAATGCCATTTTTATGG
553 GATAGGGTGGTAGGTCAGTTTAGGCACATCTTCATATTTCTGATG-CCCAATGCCATTTTTATGG
*
33921 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
617 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTT
** * * *
33986 TCTATTTTTCAAGATTTTTGAAACTTTTTACGGTCTGAGAGTTTTTTAAAATTTCTTTTAGAAGG
682 TCTATTTTTCAAGATTTTCAAAACTTTTTACGGTCAGAGAGTTTTTTAAAATTT-TTTCAAAAGG
* * * *
34051 TGTTTTTGCCCCAAACTTGGTAGATGTAATCCTTGTATTTTTGTTGGCATACACAAAAGAATTCA
746 AGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTA-TTTTGTTGGCATACACAAAACAATTCA
34116 GCTAAAAACTCGAAATGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTCCAG
810 GCTAAAAACTCGAAATGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTCCAG
* *
34176 ACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
34241 CTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
66 CTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
*
34306 TGTGCGCACACCCCCTCCGCCCCTCCCAAATCGTCGTAACCCCAATGCCGTCGGTCAGGTTCTCC
131 TGTGCGCACACCCCCTCCGCCCC-CCC-AATCGTCG-AACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
34371 GATGATGTTCTGACGATGGTGCCCCGGC-AAAAAAAAT-TGGCACCAGCACATGCCCGAGCCCAG
193 GACGATGCTCTGATGATGGTGCCCCGGCGAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAG
* * *
34434 CATGTGCACCCACAACCCTCAGTCCGGTCTGATCTTACACT-GGAATGAACTCCGTATGCCTAAG
258 CATGTGCACCCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAG
* **** * ** * *
34498 TCAACCCA-TGAAACGAGCGTGCGGGCACTCAGTTGGCCAGAGGGGCAGGATGTGCTAGTCGAGG
323 TCAACCCACAG-AACGAGCGTGCGGGCACTCAGCAAACAAGAGGGGCAGGATGCACAAGCCGAGG
* * * * *
34562 ATCGATCGGGTCCC-CCCTACGTGCTGTCGATCCTGCTATCGCAACACTCGGTCC-GGTCTGATC
387 ATCGATCGGGTCCCTCCCTACATGCTGTCGATCCTACTATCGCAACACTCGATCCTGATCCGATC
* *
34625 TTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGC-GGCGGGAGGGCACTA
452 TTAGACT-GGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAACGGGCGAGAGGGCACTA
* * * * * * **
34689 CGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
516 CGCCAGCCAGAGAGGCAGGATACGCAACCCATGGATCGATAGGGTGGTAGGTCAGTTTAGGCACA
34754 TCTTCATATTTCTGCCATG-CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
581 TCTTCATATTTCTG--ATGCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
34818 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTT
644 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAAGATTTTCAAAACTTT
*
34883 TTACGGTTCAG-GA-TTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTGGACG
709 TTACGG-TCAGAGAGTTTTTT-AAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * *
34946 TGATCCTTGTATTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
772 TAATCCTTGTATTTTGTTGGCATACACAAAACAATTCAGCTAAAAACTCGAAATGTACAAGATTT
* *
35011 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
837 TGTGACCAATTGAAAAAAGTGTCCCCATTCCAG
35044 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
1 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
35109 CTCGAGGTTCAATGAGGGATAGGGGGACAATATAAGGGCCAAGTACCAGCACCCATCACTCATCC
66 CTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
* * * * *
35174 TATGTGCACACCCCCT--GCCCCCCCAATCGCCAGAACCCTAATGCCGCCGGTCAGGTTCTCCGG
131 TGTGCGCACACCCCCTCCGCCCCCCCAATCGTC-GAACCCCAATGCCGCCGGTCAGGTTCTCCGA
*
35237 CGATGCTCTGATGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
195 CGATGCTCTGATGATGGTGCCCC-GGCGAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGC
* * * *
35302 ATGTCCACCCGCAACCCTCGGTGTAGTCTGATCTTACACTGGGAATGAACTTCGTATGC
259 ATGTGCACCCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGC
35361 TTAGACTGGG
Statistics
Matches: 1062, Mismatches: 106, Indels: 68
0.86 0.09 0.06
Matches are distributed among these distances:
864 53 0.05
865 7 0.01
866 14 0.01
867 61 0.06
868 235 0.22
869 46 0.04
870 218 0.21
871 40 0.04
872 3 0.00
875 34 0.03
876 85 0.08
882 1 0.00
883 1 0.00
885 1 0.00
887 1 0.00
890 1 0.00
892 1 0.00
897 2 0.00
900 1 0.00
902 43 0.04
903 141 0.13
904 12 0.01
905 3 0.00
906 6 0.01
907 52 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
TGTGCGCACACCCCCTCCGCCCCCCCAATCGTCGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
GATGCTCTGATGATGGTGCCCCGGCGAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCACCCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACAGAACGAGCGTGCGGGCACTCAGCAAACAAGAGGGGCAGGATGCACAAGCCGAGGATCG
ATCGGGTCCCTCCCTACATGCTGTCGATCCTACTATCGCAACACTCGATCCTGATCCGATCTTAG
ACTGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAACGGGCGAGAGGGCACTACGCCA
GCCAGAGAGGCAGGATACGCAACCCATGGATCGATAGGGTGGTAGGTCAGTTTAGGCACATCTTC
ATATTTCTGATGCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAAGATTTTCAAAACTTTTTACGGT
CAGAGAGTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTG
TATTTTGTTGGCATACACAAAACAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCAA
TTGAAAAAAGTGTCCCCATTCCAG
Found at i:35370 original size:26 final size:26
Alignment explanation
Indices: 35334--35386 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
35324 GTAGTCTGAT
35334 CTTACACTGGGAATGAACT-TCGTATG
1 CTTACACTGGGAATGAACTCT-GTATG
*
35360 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
35386 C
1 C
35387 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:35769 original size:246 final size:247
Alignment explanation
Indices: 35334--35808 Score: 587
Period size: 246 Copynumber: 1.9 Consensus size: 247
35324 GTAGTCTGAT
** * * *
35334 CTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
1 CTTACACTAAGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCC
* * * * * * * * *
35399 ACAAAATGAGCGTGCGGGTGCTCAGTCGGCTAAAGGGGCAGGATGCGCAAGCTGGGGATCGGTCG
66 ACAAAATGAGCGTGCGGGTGCTCAGCCAGCCAAAGGGGCAAGATGCACAAGCCGAGGATCGATCA
* * ** ** * *
35464 GGTCCCCCCTACGTGCTGTCGATCCTGGCACCGCAACCCTCAATCTTGTCTGATCTTAGACTGGG
131 GGTCCCCACTACCTGCTACCGATCCTACCACCGCAACCCTCAATCTCGTCCGATCTTAGACTGGG
* *
35529 AATGAACTCCGTACGCCTAAGCCAACCGATGAAATGACCGGTCTGGTCCAAA
196 AATGAACTCCATACGCCTAAGCCAACCGACGAAATGACCGGTCTGGTCCAAA
*
35581 CTTACACTAAGAATGAACTCCGTTTCCTTAGACTGGGAATGAACTC-ATATGCCTAAGTCAACCC
1 CTTACACTAAGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCC
* * * *
35645 ACGAAATGAGTGTGC-GGTGCTCAGCCAGCCAGAGGGGTAAGATGCACAAGCCGAGGATCGATCA
66 ACAAAATGAGCGTGCGGGTGCTCAGCCAGCCAAAGGGGCAAGATGCACAAGCCGAGGATCGATCA
* * ** **
35709 GGTCCCCTATTTCCTGCTACCGATCCTACCGTCGCAACCCTCGGTC-CGATCCGATCTTAGACTG
131 GGTCCCC-ACTACCTGCTACCGATCCTACCACCGCAACCCTCAATCTCG-TCCGATCTTAGACTG
*
35773 GGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
194 GGAATGAACTCCATACGCCTAAGCCAACCGACGAAA
35809 CGAGCGGACG
Statistics
Matches: 190, Mismatches: 36, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
245 46 0.24
246 103 0.54
247 41 0.22
ACGTcount: A:0.26, C:0.28, G:0.25, T:0.21
Consensus pattern (247 bp):
CTTACACTAAGAATGAACTCCGTATCCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCC
ACAAAATGAGCGTGCGGGTGCTCAGCCAGCCAAAGGGGCAAGATGCACAAGCCGAGGATCGATCA
GGTCCCCACTACCTGCTACCGATCCTACCACCGCAACCCTCAATCTCGTCCGATCTTAGACTGGG
AATGAACTCCATACGCCTAAGCCAACCGACGAAATGACCGGTCTGGTCCAAA
Found at i:43014 original size:26 final size:26
Alignment explanation
Indices: 42976--43028 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
42966 CTAGTCTGAT
42976 CTTACACTAGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* * *
43002 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
43028 C
1 C
43029 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:44717 original size:26 final size:26
Alignment explanation
Indices: 44679--44731 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
44669 TCGGTTCGAT
44679 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
44705 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
44731 C
1 C
44732 CTAAGTTAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:45481 original size:883 final size:876
Alignment explanation
Indices: 43097--45485 Score: 3072
Period size: 892 Copynumber: 2.7 Consensus size: 876
43087 CCATATACTG
* * *
43097 GGAATGAACTCCGTATGCCTAAGCCAACGATGAAACGAGCGGACGGGCGGGCACTACGTCAAAAA
1 GGAATGAACTCCGTATGCCTAAGCCAACGATGAAACGAGCGGACGGGTGGGCACTACGTCAGACA
* * *
43162 GAGTGGCGGGATGCACAAACCGTGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATAT
66 GAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-
* * *
43227 TTCTATCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCATG
130 TTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* * *
43292 TGATGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTG
195 TGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCG
*
43357 AGATTTTTTTAAAAATTTTTTAGAAGGAGTTTTGGCCCCACACTTGGTAGACGTGATCCTTGTAT
260 AGA-TTTTTTAAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
43422 TTTTGTTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGTCTACAGGATTTTGTGACAATTG
324 TTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTCTACAGGATTTTGTGACCATT-
* * *
43487 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAACAAACCTGTAAAATCTCAAAT
388 --AGAAA-----CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
** *
43552 GCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAG
446 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * **
43617 TACCAGCACCCATCGCACATTATGTGCGTACATCCCCCCCACCTACCCAATC-CCAGGAACTGCA
511 TACCAGCACCCATCGCACATCATGTGC--ACA-CACCCAC-CCT-CCCAATCGCC-GAAACCCCA
** * * *
43681 ACACTGTCAATCAGGTTCTCCGTTGATGCTCCGACGATGGTGCCTCCGACGAAAAAAAAATACGG
570 ATGCCGTCGATCAGGTTCTCCG-TGATGCTCCGACGATGGTGCCTCCGACGAAAAAAAAATACCG
** * * * *
43746 CTGCAGCATATGCCCGAGCCCAGCATGTGCACCCGCAACCCTTGGTCTGGTCTGATCTTACATTG
634 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTAGGTCTGGTCTGATCTTACACTA
**
43811 GGAATGAACTCCGTATGCTTAGACTGGAATGAACTCTTTATGCCTAAGTCAACCCACGAAACGAG
699 GGAATGAACTCCGTATGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* ** * ** * *
43876 CGTGCGGGCTTTCAGCCGACCAGAGGGGCAAGATGGGCAAGCCGAGGATAGGCTGGGTCCCTCCT
764 CGTGCAGGCGCTCAGCCGACCAAAGGGGCAAGATGCACAAGCCGAGGATAGACTGGGTCCCCCCT
* * *
43941 ACGTGTTGCTGATCCTGCTGTCGCAACCCTCGGTCCGATCTTAGAATG
829 ACATGTTGCCGATCCTGCTGTCGCAACCCTCGGTCCGATCTTAGAATA
* * *
43989 GGAATGAACTCCGTATGCCGAAGCCAAACGATGAAACGAGCGGACGGGTGGGCACTACGTCTGCC
1 GGAATGAACTCCGTATGCCTAAGCC-AACGATGAAACGAGCGGACGGGTGGGCACTACGTCAGAC
* * * * * *
44054 AGAGAGGCAGGATGCGCAAGCCATGGGTCAATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATA
65 AGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
44119 TTTTGCCATGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
130 TTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATG
* *
44184 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
195 TGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCG
* * * * *
44249 AGATTTTTTTAAAATTTTTTTACAAGGAGTTTTGGCCCCAAACTTAGTGGACTTGATCCTTGTAT
260 AGA-TTTTTTAAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * * *
44314 TTTTGTTGGCATGCACAAAAAATTT-GGCTAAAAAGTCTATGTGTACAGGATTTTGTGACCATTA
324 TTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTCTACAGGATTTTGTGACCATTA
44378 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
389 G---AAA-----CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
44443 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
446 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * *
44508 TACCAGCACCCATTGCACATCATGTGCGCACACCCCAACCCCCCCAATCGCCGAAACCCCAATGC
511 TACCAGCACCCATCGCACATCATGTGCACACA-CCC-ACCCTCCCAATCGCCGAAACCCCAATGC
* *
44573 CGTCGATCA-GTT-T-C----T-CT--GACGATGGTGCC-CCAGGCGAAAAAAAAATGCCGCACC
574 CGTCGATCAGGTTCTCCGTGATGCTCCGACGATGGTGCCTCC-GACGAAAAAAAAATACCGCACC
* *
44627 AGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCAGTTC-GGT-TCGATCTTACACTAGG
638 AGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCT-AGGTCTGGTCT-GATCTTACACTAGG
* * *
44690 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAGCCCATGAAACGAGC
701 AATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * *
44755 GTGCAGGCGCTCAGCCGGCCAAAGGGGTAGGATGCACAAGCTGGGGATCGAAC-GGGTCCCCCCT
765 GTGCAGGCGCTCAGCCGACCAAAGGGGCAAGATGCACAAGCCGAGGATAG-ACTGGGTCCCCCCT
* * * **
44819 GCATGTTGCCGATCCTGCTGTGGCAACCCTCGATTCGGTCTGATCTTAGTCTA
829 ACATGTTGCCGATCCTGCTGTCGCAA-CC-C---TCGGTCCGATCTTAGAATA
* * * * * *
44872 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAG-TGAGCGGGTAGGCATTACGTCGGT
1 GGAATGAACTCCGTATGCCTAAGCCAA-CGATGAAACGAGCGGA-CGGGTGGGCACTACGTCAGA
*
44936 CAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTAT
64 CAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
**
45001 ATATCTGTCACACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
129 AT-TCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * ** *
45066 TGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTATAATTTTTAAAACTTTTTACTGTT
193 TGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTT
* *
45131 CGAGATTTTTTAAAAATTTTTTCAGAAAGAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGC
258 CGAGATTTTTTAAAAATTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
** * * * *
45195 ATTTTTGTTGGCATGCACAAAAAATTTCAATTAAAAACTCGAAATTTACAGGATTTTTTTACCAT
322 ATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTCTACAGGATTTTGTGACCAT
* * * *
45260 TTG-AA-CAATTTCAGACACTTTAATGGCTACTAGTAGCAAACCTGTAAAATCTCAAATGCTCTT
387 TAGAAACCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
45323 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAG
452 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * *
45388 CACCCATCACACATCACGTGCACACACCCGCCCTCCCAATCGCCGAAACCCCAATGCCATCGGTC
517 CACCCATCGCACATCATGTGCACACACCCACCCTCCCAATCGCCGAAACCCCAATGCCGTCGATC
*
45453 AGGTTCTCCGGTGATGCTCCGGCGATGGTGCCT
582 AGGTTCTCC-GTGATGCTCCGACGATGGTGCCT
45486 AGCACGTGCA
Statistics
Matches: 1309, Mismatches: 154, Indels: 76
0.85 0.10 0.05
Matches are distributed among these distances:
872 33 0.03
873 6 0.00
874 142 0.11
875 1 0.00
876 3 0.00
877 103 0.08
878 109 0.08
879 5 0.00
880 5 0.00
881 2 0.00
882 4 0.00
883 205 0.16
884 159 0.12
885 1 0.00
886 1 0.00
887 3 0.00
888 24 0.02
889 9 0.01
890 1 0.00
891 177 0.14
892 226 0.17
893 90 0.07
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (876 bp):
GGAATGAACTCCGTATGCCTAAGCCAACGATGAAACGAGCGGACGGGTGGGCACTACGTCAGACA
GAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
GAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA
GATTTTTTAAAAATTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
TTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTCTACAGGATTTTGTGACCATTAGA
AACCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCACACACCCACCCTCCCAATCGCCGAAACCCCAATGCCGTCGATCAGGT
TCTCCGTGATGCTCCGACGATGGTGCCTCCGACGAAAAAAAAATACCGCACCAGCACATGCCCGA
GCCCAGCATGTGCACCCGCAACCCTAGGTCTGGTCTGATCTTACACTAGGAATGAACTCCGTATG
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCC
GACCAAAGGGGCAAGATGCACAAGCCGAGGATAGACTGGGTCCCCCCTACATGTTGCCGATCCTG
CTGTCGCAACCCTCGGTCCGATCTTAGAATA
Found at i:47668 original size:896 final size:882
Alignment explanation
Indices: 45500--48361 Score: 2526
Period size: 896 Copynumber: 3.3 Consensus size: 882
45490 CGTGCACCCG
* * * * * * * *
45500 CAACCCATGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAAGATGTGTAAGCCGAGGAT
1 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * ** ** * * **
45565 C-AGTCGGGTCCCCCCTGCGTGCTGGTGATCCTGCTGCC-CTAACCCTC-GATCCGGTCCAATCT
66 CGA-CCGAGT-CCCCCTATGTGCTACTGATCCTACTACCGC-AACCCTCAG-TCCGGTCTGATCT
* * * * *
45627 TAGACTGGGAAAGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCAGGCACTAT
127 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC
* * ** * * *
45692 GCCAGCCAGAAATACGGGATGCGCAAGCTGTGAATCGATAGGCTGGTAGGTGGGTTTAGGCACAT
192 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
45757 CTTCATATTTCTGCCACGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCTTTAAG
257 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* ** * *
45822 CTTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTTGATTTTTGAAACTTTTT
322 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC-ACAATTTTAAAACTTTTT
* * * * * * *
45887 ATGGTTCGG---GA-TTTT--TT-AA-------AAATTTTTTCAGGAGGAGCTTTAGCCACAAAC
386 ACGATTCGGATTGACTTTTAGTTGAATTTTTTTAAAATTTTTCAGAAGGAGTTTTGGCCCCAAAC
* * * * * *
45938 CTGGTAGACGTGATCCTTGTAATTTTGTTGGCATGCATAAAAAAATTCAGGTAAAAAATCGAAGT
451 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
46003 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
516 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTCAATGGCTACTGGCA
* *
46068 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCAAGGTTTGATGAGGGATA
581 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
46133 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCACACATCATGTGAGCACA--CCCTCCGCC
646 GGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCC-CC
** * * * * * *
46196 CCCCAATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCTTCGACGATGCTCCGACGATCGTACCT
710 CCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC
* * * * **
46261 CGAGCAAAAAAAAATACGGCACTAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGT
775 CGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGT
**
46326 CTGGTCCGATCTTACACTGGGAATGAACTCTGTATCCTTAGACAAGGAAGCAACTCCGTATGCCT
840 CCAGTCCGATCTTACACTGGGAATG-A------A--C-T--------------CT--GTATGCCT
46391 AAGT
879 AAGT
* * **
46395 CAACCCACGAAACGAGCGTGCAGGCGCTCAG-TCGGCCAGAGGGGCAGGATGCTCAAGCCAAGGA
1 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
** * * * * * * * *
46459 TCGGTCGGGTCCCCCCCTACGTGCT-GTCGATCCTGCTGCCACAACCCTCGGTCCAGTCTGATCT
65 TCGACCGAGT--CCCCCTATGTGCTACT-GATCCTACTACCGCAACCCTCAGTCCGGTCTGATCT
* * * * * * *
46523 TAGACTAGGAATGAACTTCGTATGCCTGAGCCAACTGACGGAATGAGCGTGCGGGCGGGCACTAC
127 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC
*
46588 GCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
192 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* ** *
46653 CTTCATATTTCTACTGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
257 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* ** * * *
46718 CCTTCATGTGAAGTTTCATGGCAAGATGACTTATTTTCTATTTGTCACGATTTTTGAAACTTTTT
322 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-AATTTTAAAACTTTTT
* *
46783 ---A--CGG-TT--C-----G-TAAATTTTTTTAAAATTTTTCAGAAGTAGTTTGTGG-CCCAAA
386 ACGATTCGGATTGACTTTTAGTTGAATTTTTTTAAAATTTTTCAGAAGGAGTTT-TGGCCCCAAA
* *
46833 CTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAG
450 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
46898 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGC
515 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTCAATGGCTACTGGC
* *
46963 AGCAAACCTGTAAAATCTCAAACGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGCGAT
580 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
47027 AGGGGACCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCTTGTGTGCACACCCCCTCACC
645 AGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTC-CC
* * *
47092 CCCCCAATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGCTCCGGCAATGGTGCC
709 CCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * * *
47157 CCGAGCGAAAAAATATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCGG
774 CCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGG
* *
47222 TCCAGTCCGATCATACACTGGGATTGAACTCTGTATGCCTAAGT
839 TCCAGTCCGATCTTACACTGGGAATGAACTCTGTATGCCTAAGT
* * * * * *
47266 CAACCCACGAAACGAGCATGTGGGCGCTCAGCTGGCCAAAGGGGCAGGATGTGCAAGTCGAGGAT
1 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * *
47331 CGACCGAGTCCCCCTTGTGTGCTGCTGATCCTGCTACCGCAACCCTCAGTCTGGTCTGATCTTAG
66 CGACCGAGTCCCCC-TATGTGCTACTGATCCTACTACCGCAACCCTCAGTCCGGTCTGATCTTAG
* * * * * * * **
47396 ATTGGGAATGAACTCTGTATGCCTAAGCCAACCGAGGAAATGAGCAGGCCGACGGGCACTATTCC
130 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCC
* * * *
47461 GGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAAGGTGGTAGCTGGGTTTAGGAACATCTT
195 GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
47526 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCT
260 CATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
*
47591 TCATGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACG
325 TCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTT-AAAACTTTTTACG
*
47656 ATTC-GA--GA-TTTT--TCT--A-------AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
389 ATTCGGATTGACTTTTAGT-TGAATTTTTTTAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTT
47706 GGT--A---GA--C--------------G--TG---------ATTCAGCTAAAAACTCGAAGTGT
453 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * *
47739 ACAGGATTTTGTGATCATTTG-AAAAAGTGTCCTCATTTCAGACACTTTAATGGCT-CTTGGCAG
518 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTCAATGGCTAC-TGGCAG
* *
47802 CAAACCTGTAAAATCTCAAATGCTGTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
582 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * * ** * *
47867 GGGACCAATATAAGGGACAACTACAAGCATCCATCGCACATCATGTGCACACACCCTTCTCGCCC
647 GGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCC-CCTCCCCC
** * * ** * *
47932 CCCAATCGTCGGAACTCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGCGATAGAGCCCC
711 CCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCC
* * ** * * * * *
47997 AGGCAAAAAAAAATGTAGTACTAGCACATGCCCGAGCCCAGCATGTGCTCCTATAACCCTCGGTC
776 GGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGT-
* *
48062 CGATCTAATCTTACACTGGGAATGAACTCCATACGCTTAGACTGGGAATGAACTCCGTATGCCTA
840 C---C--A--GT-C-C---G-AT---CT---TA--C----ACTGGGAATGAACTCTGTATGCCTA
48127 AGT
880 AGT
** * * * *
48130 CAACCCACGAAACGAGCGTGTAGGTGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCAGGGAT
1 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * * ** *
48195 CGATCGGGTCCCCC-CTGCATGCTA-TCGATCCTGCTACCATAACCCTCAATCCGGT-TCGATCT
66 CGACCGAGTCCCCCTATG--TGCTACT-GATCCTACTACCGCAACCCTCAGTCCGGTCT-GATCT
* * * * *
48257 TAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGC--GCTC-A-
127 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTAC
* * * * *
48318 GCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGT
192 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
48362 CCGTCCCTGC
Statistics
Matches: 1669, Mismatches: 223, Indels: 185
0.80 0.11 0.09
Matches are distributed among these distances:
836 1 0.00
837 66 0.04
838 235 0.14
839 4 0.00
842 1 0.00
844 1 0.00
846 1 0.00
847 3 0.00
848 1 0.00
849 1 0.00
851 1 0.00
852 2 0.00
855 1 0.00
858 2 0.00
860 37 0.02
861 1 0.00
862 5 0.00
863 3 0.00
864 172 0.10
865 2 0.00
868 1 0.00
869 13 0.01
870 291 0.17
871 74 0.04
872 1 0.00
873 3 0.00
874 1 0.00
875 1 0.00
877 1 0.00
879 1 0.00
887 1 0.00
888 2 0.00
889 2 0.00
890 1 0.00
891 3 0.00
895 141 0.08
896 444 0.27
897 147 0.09
898 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (882 bp):
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
CGACCGAGTCCCCCTATGTGCTACTGATCCTACTACCGCAACCCTCAGTCCGGTCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCG
GCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTAAAACTTTTTACGAT
TCGGATTGACTTTTAGTTGAATTTTTTTAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTCAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGC
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCTCCCCCCCCAA
TCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCG
AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCAGTC
CGATCTTACACTGGGAATGAACTCTGTATGCCTAAGT
Found at i:48485 original size:159 final size:157
Alignment explanation
Indices: 48097--48472 Score: 518
Period size: 158 Copynumber: 2.4 Consensus size: 157
48087 ACTCCATACG
* *
48097 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* * *
48162 CGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGATCGGGTCCCCCCTGCATGCTATCGATCCT
65 TGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGCATGCTATCGATCCT
* *
48227 GCTACCATAACCCTCAATCCGGTTCGAT
130 ACTACCACAACCCTCAATCCGGTTCGAT
*
48255 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGC-TAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
* *
48320 TGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCGTCCCTGCGTGCTATCGATCC
65 TGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCC-CCCCTGCATGCTATCGATCC
* * * * * *
48385 TACTGCCGCATCCCTCAGTCGGGTTTGAT
129 TACTACCACAACCCTCAATCCGGTTCGAT
* * * * * *
48414 CTTAGACTAGGAATGAACTCCATATGACTAAGCCAACCGACGAAATGAGCGGGTGGGCG
1 CTTAGACTGGGAATGAACTCCGTATG-CTAAGTCAACCCACGAAACGAGCGTGTGGGCG
48473 GGCACTATGC
Statistics
Matches: 192, Mismatches: 23, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
157 1 0.01
158 101 0.53
159 89 0.46
160 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.29, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCT
GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCCTGCATGCTATCGATCCTA
CTACCACAACCCTCAATCCGGTTCGAT
Found at i:48517 original size:159 final size:157
Alignment explanation
Indices: 48097--48524 Score: 455
Period size: 158 Copynumber: 2.7 Consensus size: 157
48087 ACTCCATACG
* * * * ** **
48097 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTAGGTGCTCAGC
1 CTTAGACTAGGAATGAACTCCATATGCGTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * *
48162 CGGCCAGAGGGGCAGGATGCACAAGCCAGGGATCGATCGGGTCCCCCCTGCATGCTATCGATCCT
66 CAGCCAGAGAGGCAGGATGCGCAAGCC-GGGATCGATCGGGTCCCCCCTGCATGCTATCGATCCT
* *
48227 GCTACCATAACCCTCAATCCGGTTCGAT
130 ACTACCACAACCCTCAATCCGGTTCGAT
* * * *
48255 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCATATGCGTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
** * * *
48320 TGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCGTCCCTGCGTGCTATCGATCC
66 CAGCCAGAGAGGCAGGATGCGCAAGCC-GGGATCGATCGGGTCC-CCCCTGCATGCTATCGATCC
* * * * * *
48385 TACTGCCGCATCCCTCAGTCGGGTTTGAT
129 TACTACCACAACCCTCAATCCGGTTCGAT
* *
48414 CTTAGACTAGGAATGAACTCCATATGAC-TAAGCCAACCGACGAAATGAGCGGGTGGGCGGGCAC
1 CTTAGACTAGGAATGAACTCCATATG-CGTAAGCCAACCCACGAAACGAGC--GT--GCGGGCAC
* * *
48478 T-ATGCCAGCCAGAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGT
61 TCA-GCCAGCCAGAGAGGCAGGATGCGCAAGCCG-GGATCGATCGGGT
48525 GGTAGGTGGG
Statistics
Matches: 233, Mismatches: 29, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
158 102 0.44
159 82 0.35
160 1 0.00
161 2 0.01
162 2 0.01
163 44 0.19
ACGTcount: A:0.23, C:0.28, G:0.31, T:0.18
Consensus pattern (157 bp):
CTTAGACTAGGAATGAACTCCATATGCGTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
CAGCCAGAGAGGCAGGATGCGCAAGCCGGGATCGATCGGGTCCCCCCTGCATGCTATCGATCCTA
CTACCACAACCCTCAATCCGGTTCGAT
Found at i:49154 original size:26 final size:26
Alignment explanation
Indices: 49125--49177 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
49115 CCAGTCCGAT
49125 CTTACACTGGGAATAAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
* * *
49151 CTTAGACTGTGAATGAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
49177 C
1 C
49178 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:50073 original size:26 final size:26
Alignment explanation
Indices: 50021--50073 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
50011 TCGGTCCGAT
* **
50021 CTTACATTGGGAATGAACTCTGTATG
1 CTTACATTGGCAATGAACTCTACATG
*
50047 CTTAGATTGGCAATGAACTCTACATG
1 CTTACATTGGCAATGAACTCTACATG
50073 C
1 C
50074 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTACATTGGCAATGAACTCTACATG
Found at i:50952 original size:26 final size:26
Alignment explanation
Indices: 50923--50973 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
50913 TCGATCTTAC
*
50923 ACTGGGAATGAACTTCGTATGCCTAG
1 ACTGGGAATGAACTCCGTATGCCTAG
50949 ACTGGGAATGAACTCCGTATGCCTA
1 ACTGGGAATGAACTCCGTATGCCTA
50974 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (26 bp):
ACTGGGAATGAACTCCGTATGCCTAG
Found at i:51133 original size:897 final size:898
Alignment explanation
Indices: 48255--51965 Score: 5073
Period size: 901 Copynumber: 4.1 Consensus size: 898
48245 CCGGTTCGAT
* * *
48255 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGT
* *
48319 CTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCGTC-CCTGCGTGCTA-TCGA
66 C-GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCC-TCTCCTACGTGCTACT-GA
* * * * * * * * *
48382 TCCTACTGCCGCATCCC-TCAGTCGGGTTTGATCTTAGACTAGGAATGAACTCCATATGACTAAG
128 TCCTACTACCGCAACCCTTGA-TCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
48446 CCAACCGACGAAATGAGCGGGTGGGCGGGCACTATGCCAGCCAGAGAGGCGGGATGCGCAAGCTG
192 CCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* *
48511 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTT
257 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTT
* * *
48576 TTATGGCTTGTAAATTCATACAACGGTTCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGACGAC
322 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* ** *
48641 TCGTTTTCTATTTTTCATGATTTTGGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTCA
387 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
* *
48706 GAAGGAGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTGTATTTTTCTTGGCGTA--CACAAAA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT--CGTATGCACAAAA
* * * *
48769 AGATTCAGCTAGAAACTCGAAGTGTATAGGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
48834 AGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
48899 TTCTTGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
645 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
48964 CATCTGCACACA-CCCC-CCGCCCCCCAATCGCCAGAACCCCAATGCCGCCGATCAGGTTCTCCT
710 CATCTGCGCACACCCCCTCCGCCCCCCAATCACCAGAACCCCAATGCCGCCGATCAGGTTCTCC-
* * * * *
49027 G-CAATGCTCCGGCGATGGTGCCCCGGGC-AAAAAAAAATGCGGCACCAGCACATGCCTGGGCCT
774 GACGATGCTCCGACGATGGTGCCCC-GGCTAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCG
* * ** *
49090 AGCATGTGCACCCACAACCCTCTGTCCAGTCCGATCTTACACTGGGAATAAACTCCGTATG
838 AGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATAAACTTCGTATG
* * * * *
49151 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGT
* * * * * * * *
49216 CGGCCAGAGGGGTAGGATCCGCAAGTCGGGGATCGGCTGGG-CCCCTCCTATGTGCTACCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCTCTCCTACGTGCTACTGATCC
** **
49280 TACTACCGCAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TACTACCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
49345 CTGATGAAACGAGCGGGTGGGCGGGCACTACACCGGCTAGAGAGGTGGGATGCGCAAGCCGTGGA
196 CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
*
49410 TCGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAACCATGCCAATGCCATTTTTAT
261 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
* *
49474 GG-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTTAAGTTTCATGGCAAGACAACTCGT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * *
49538 TTTCTATTTTTTACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTGAAAATTTTTTCAGAAG
391 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
** * * * **
49603 GCTTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGGGTGCACAAAAAAATTC
456 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGTATGCACAAAAAAATTC
* *
49668 AGCTAAAAACTTGAAGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACAC
521 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
49733 TTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGGTGTGAGTTCTC
586 TTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTT
* * *
49798 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACGCATCACACATCATCT
650 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCT
* * * * * *
49863 GCGCACACCCCCCCCGGCCCCCAATCACCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGATGAT
715 GCGCACACCCCCTCCGCCCCCCAATCACCAGAACCCCAATGCCGCCGATCAGGTTCTCCGACGAT
* * * *
49928 GCTCCGGCGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCGAGCATGT
780 GCTCCGACGATGGTGCCCCGGCTAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCGAGCATGT
* * * * *
49993 ACACCCGTAACACTCGGT-TCGGTCCGATCTTACATTGGGAATGAAC-TCTGTATG
845 GCACCCGCAACCCTCGGTCT-GGTCCGATCTTACACTGGGAATAAACTTC-GTATG
* * *** *
50047 CTTAGATTGGCAATGAACTCTACATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGT
* ** *
50112 CGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGACCGGGTTCC-CTTTTACGTGCTGCTGATC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGG-TCCTCTCCTACGTGCTACTGATC
* *
50176 CTACTACCGTAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTACTACCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
50241 ACCGACGAAACGAGTGGGCGGGCGGGCACTACGTCGGCCCGAGAGGCAGGATGCGCAAGCCGTGG
195 ACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
*
50306 ATCGAT-GGGTTGGTAGGTGGGTTTAGGCACATATTCATATTTCTACCATGCCAATGCCATTTTT
260 ATCGATAGGG-TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTT
*
50370 ATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * *
50435 GTTTTCAATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTAAAAATTTTTTCAGG
389 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGA
* *
50500 AGGAGTTTTGGCCCCACACTTGGTAAACGTGATCCTTGTATTTTTGTTCGTATGCACAAAAAAAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGTATGCACAAAAAAAT
* * *
50565 TCAGCTAAAAACTCGAAGTGTACAGTATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAAC
519 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
50630 ACATT-AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 AC-TTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
50694 TTGAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
648 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
50759 GTGTGCACA-CCCCTCCG-CCCCCAATCATCAGAACCCCAATGCTC-TCGGTCAAGTTCTCCGAC
713 CTGCGCACACCCCCTCCGCCCCCCAATCACCAGAACCCCAATGC-CGCCGATCAGGTTCTCCGAC
* * * *
50821 GATGCTCCGACGATGGTGCCCCAAGCAAAAAAAAAATACGACACCAGCACATGCCCGAGCAC-AG
777 GATGCTCCGACGATGGTGCCCC-GGCTAAAAAAAAATGCGGCACCAGCACATGCCCGAGC-CGAG
* * * *
50885 CATGTGCACCCGCAACCCTCGATCTGTTTCGATCTTACACTGGGAATGAACTTCGTATG
840 CATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATAAACTTCGTATG
* * *
50944 CCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGTGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGT
* * * *
51009 TGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGACCAGGTCCTCTCCTACATGCTACTGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCTCTCCTACGTGCTACTGATCC
* * * * * * *
51074 TGCTGCTGCAACCCTTGAT-CTAGTGTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTA
131 TACTACCGCAACCCTTGATCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
51138 ACCGATGAAACAAGCGGGCGGGCGGGCGGGCACAACGCTGGCTAGAGAGGCGGGATGCGCAAGCC
195 ACCGACG--A-AA-CGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
51203 GTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
256 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATT
*
51268 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGTAGTTTCATGGCAAGACGA
321 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * *
51333 CTCGTTTTCTATTTTTCACGAATTTTGAAACTTTTGATGGTTC-AGCATTTTTTTAAAATTTTTT
386 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAG-ATTTTTTTAAAATTTTTT
* * * * *
51397 CAAAAGGAGTTTTGGCCCCACACTTGGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
450 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGTATGCACAAAA
* * *
51462 AAATTTAGCTAAAAACTTGAAGTGTACAGGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
51527 AGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
51592 TT-TTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
645 TTCTT-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** * * * *
51656 TCATGTGGGCACACCCCCTCCGCCACCCCAATCGTCGGAACCCTAGTGCCGCTGATCAGGTTCTC
709 TCATCTGCGCACACCCCCTCCGCC-CCCCAATCACCAGAACCCCAATGCCGCCGATCAGGTTCTC
* * * * * * *
51721 TGGA-GATGCTCCGATGATGATGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATTCTCGAGCC
773 -CGACGATGCTCCGACGATGGTGCCCCGGCTAAAAAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * *
51785 CAGCATGTGCACCCGCTACCCTCGGTCCGGTCCGATCTTACGCTGGGAATAAACTTCATATT
837 GAGCATGTGCACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATAAACTTCGTATG
*
51847 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGT
* * * * * *
51912 CAGCCAGAGGGGTAGGATGTGCAAGCCAGGGATC-AGCCGAGTCCTCCCCTACGT
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA-CCGGGTCCTCTCCTACGT
51966 CCGATCCAAT
Statistics
Matches: 2483, Mismatches: 292, Indels: 73
0.87 0.10 0.03
Matches are distributed among these distances:
891 1 0.00
893 275 0.11
894 141 0.06
895 136 0.05
896 388 0.16
897 392 0.16
898 143 0.06
899 278 0.11
900 10 0.00
901 468 0.19
902 13 0.01
903 186 0.07
904 50 0.02
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGT
CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCTCTCCTACGTGCTACTGATCC
TACTACCGCAACCCTTGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTCGTATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTG
CGCACACCCCCTCCGCCCCCCAATCACCAGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCCGGCTAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCGAGCATGTG
CACCCGCAACCCTCGGTCTGGTCCGATCTTACACTGGGAATAAACTTCGTATG
Found at i:53469 original size:26 final size:26
Alignment explanation
Indices: 53440--53492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
53430 CCGGTCTGAT
53440 CTTACACCAGGAATGAACTCTGTATG
1 CTTACACCAGGAATGAACTCTGTATG
* *
53466 CTTAGACGAGGAATGAACTCTGTATG
1 CTTACACCAGGAATGAACTCTGTATG
53492 C
1 C
53493 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACCAGGAATGAACTCTGTATG
Found at i:54143 original size:792 final size:793
Alignment explanation
Indices: 52605--54184 Score: 2436
Period size: 792 Copynumber: 2.0 Consensus size: 793
52595 AGCACATGCC
* * * * * *
52605 CGAGCCCAGTATGTGCACCCATAACCCTCGGTCTGGTCCGATCTTAAATCGGGAATGAACTCTGT
1 CGAGCCCAGCATGTGCACCCACAACCCTCGATCCGGTCCGATCTTAAACCAGGAATGAACTCTGT
* * *
52670 ATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTC
66 ATGCTTAGACGAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * ** * *
52735 AACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCTGGTCCTCCCTTGCATGTTGCCGG
131 AACCGACCAGAGGGGCAGGAAGCACAAGCCAAGGATCGATCTGATCCTCCCTTGCATGCTGCCGG
*
52800 TCCTGCTGCCACAACTCTCAGTCCGGTCTCATCTTAGACTGGGAATGAACTCCATATGCCTAAAC
196 TCCTGCTGCCACAACTCTCAGTCCGATCTCATCTTAGACTGGGAATGAACTCCATATGCCTAAAC
** * * * * * * *
52865 CAACTGACGAAATGAGTGGGCGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
261 CAACCAACAAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAAGCAGGATGCGCAAGCCGT
* *
52930 GGATCACATGGGTGGTAGGTGGGTTTTGGCACATCTTCATTTTTCTCCCATGCCATTGCCATTTT
326 GGATCACATGGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTCTCCCATGCCAATGCCATTTT
52995 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
391 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * **
53060 CGTTTTCTATTTTTCACGATTTTGGAAACTTTTTACGGTTCCTGAATTTTTTAAAATTTTTTCAG
456 CATTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAAGAATTTTTTAAAATTTTTTCAG
*
53125 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAA
521 AAGGAGTTTTGGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTGTTGGCATGCAAAAAAAAA
*
53190 TTCAGCTAAAAGATCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGA
586 TTCAGCTAAAAGATCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
53255 CACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTC
651 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTC
* * *
53320 TCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAACACCCATCACACATCAT
716 TCAAGGTTTGATAAGGAATAGGGGACCAATATAAGGGCCAAGCACCAACACCCATCACACATCAT
53385 GTGCGCACCCCCT
781 GTGCGCACCCCCT
* * *
53398 CGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCTGATCTTACACCAGGAATGAACTCTGT
1 CGAGCCCAGCATGTGCACCCACAACCCTCGATCCGGTCCGATCTTAAACCAGGAATGAACTCTGT
53463 ATGCTTAGACGAGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
66 ATGCTTAGACGAGGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * *
53527 CAGCTGACCAGAGGGGCAGGAAGTACAAGCCAAGGATC-AGTCTGATCCTCCCTTGCATGCTGTC
130 CAACCGACCAGAGGGGCAGGAAGCACAAGCCAAGGATCGA-TCTGATCCTCCCTTGCATGCTGCC
* *
53591 GGTCTTGCTGCCAGAACTCTCAGTCCGATCTCATCTTAGACTGGGAATGAACTCCATATGCCTAA
194 GGTCCTGCTGCCACAACTCTCAGTCCGATCTCATCTTAGACTGGGAATGAACTCCATATGCCTAA
*
53656 GCCAACCAACAAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAAGCAGGATGCGCAAGCC
259 ACCAACCAACAAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAAGCAGGATGCGCAAGCC
** * * *
53721 GTGGAT-TGATAGGTTGGTCGGTGGGTTTAGGCACATCTTCATATTTT-TGCCATGCCAATGCCA
324 GTGGATCACAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCAT-TTTTCTCCCATGCCAATGCCA
53784 TTTTTATGG-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
387 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* *
53848 GACTCATTTTTTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTT
452 GACTCATTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAAGAATTTTTTAAAATTTTT
* * * * * *
53913 TTAGATGGATTTTTGGCCCCAAACTTTGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAA
517 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTGTTGGCATGCAAAAA
* * *
53978 AAAATTCAGCTAAAA-ACTCGAAGTGTACAGGTTTTTGTGATCATTTGAAAAAAGTGTCCCCATT
582 AAAATTCAGCTAAAAGA-TCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
54042 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
646 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGCGGTGTG
* * *
54107 AGTTCTCGAGGTTTGATAAGGAATAAGGGG-CCAATATAAGGGCCAAGCACCAGCACCCATCGCA
711 AGTTCTCAAGGTTTGATAAGGAAT-AGGGGACCAATATAAGGGCCAAGCACCAACACCCATCACA
54171 CATCATGTGCGCAC
775 CATCATGTGCGCAC
54185 AAGCCCTCCG
Statistics
Matches: 712, Mismatches: 69, Indels: 13
0.90 0.09 0.02
Matches are distributed among these distances:
791 1 0.00
792 363 0.51
793 344 0.48
794 4 0.01
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (793 bp):
CGAGCCCAGCATGTGCACCCACAACCCTCGATCCGGTCCGATCTTAAACCAGGAATGAACTCTGT
ATGCTTAGACGAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AACCGACCAGAGGGGCAGGAAGCACAAGCCAAGGATCGATCTGATCCTCCCTTGCATGCTGCCGG
TCCTGCTGCCACAACTCTCAGTCCGATCTCATCTTAGACTGGGAATGAACTCCATATGCCTAAAC
CAACCAACAAAACGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAAGCAGGATGCGCAAGCCGT
GGATCACATGGGTGGTAGGTGGGTTTAGGCACATCTTCATTTTTCTCCCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
CATTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAAGAATTTTTTAAAATTTTTTCAG
AAGGAGTTTTGGCCCCAAACTTGGTAGACATCATCCTTGTATTTTTGTTGGCATGCAAAAAAAAA
TTCAGCTAAAAGATCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTC
TCAAGGTTTGATAAGGAATAGGGGACCAATATAAGGGCCAAGCACCAACACCCATCACACATCAT
GTGCGCACCCCCT
Found at i:54352 original size:26 final size:26
Alignment explanation
Indices: 54323--54375 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
54313 CTGGTCTGAT
*
54323 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
54349 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
54375 C
1 C
54376 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:54770 original size:248 final size:248
Alignment explanation
Indices: 54321--54807 Score: 672
Period size: 248 Copynumber: 2.0 Consensus size: 248
54311 GTCTGGTCTG
* *
54321 ATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTGACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * *
54386 ACATAAAACGCATGTGCAGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGGT
66 ACACAAAACGCATGTGCAGGCGCGCAACCAGCCAGAAGGGCAGGATGCGCAAGCCAGAGATCGAT
* * * * * * * * *
54451 CGGGTCCCCCCTTGCATGCTGCCGATCCTGCTACTGCATCCCTCGATCTGGTCCGATCTTAGATT
131 CAGGTCCCCCCTTACATACTGCCGATCCTACTACTACAACCCTCGATCCGATCCGATCTTAGACT
* *
54516 GGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGAGCGGTCCGGTCCA
196 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGTCCGGTCCA
*
54569 ATCTGACACTTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
1 ATCTGACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * *
54634 GCACGAAACG-A-GCCTGCGGGCGCGCAACCAGCCAGAAGGGCAGGATGCGCAAGTCAGAGATCG
66 ACACAAAACGCATG--TGCAGGCGCGCAACCAGCCAGAAGGGCAGGATGCGCAAGCCAGAGATCG
* * * *
54697 ATCAGGTCCCCCTTTACCTACTGTCGATCCTACTGCTACAACCCTCGATCCGATCCGATCTTAGA
129 ATCAGGTCCCCCCTTACATACTGCCGATCCTACTACTACAACCCTCGATCCGATCCGATCTTAGA
*
54762 CTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGCGG
194 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
54808 GCGTGCGGGC
Statistics
Matches: 207, Mismatches: 30, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
246 1 0.00
247 1 0.00
248 205 0.99
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.20
Consensus pattern (248 bp):
ATCTGACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
ACACAAAACGCATGTGCAGGCGCGCAACCAGCCAGAAGGGCAGGATGCGCAAGCCAGAGATCGAT
CAGGTCCCCCCTTACATACTGCCGATCCTACTACTACAACCCTCGATCCGATCCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGTCCGGTCCA
Found at i:56373 original size:26 final size:26
Alignment explanation
Indices: 56324--56376 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
56314 CCGGTCTGAT
* * *
56324 CTTACACTGGGAATGGATTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
56350 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
56376 C
1 C
56377 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:63960 original size:26 final size:26
Alignment explanation
Indices: 63931--63983 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
63921 CCGGTCTGAT
63931 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
63957 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
63983 C
1 C
63984 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:64835 original size:897 final size:894
Alignment explanation
Indices: 62347--70874 Score: 11446
Period size: 895 Copynumber: 9.6 Consensus size: 894
62337 ATCCGATCCG
*
62347 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * *
62412 CTACGTCGACCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
62477 ACATCTTCATATTTTTGCCATGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
**
62542 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTACATTTCACGATTTTTGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
*
62607 TTTTACGGTTCGGGATTTTTTTAAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
261 TTTTACGGTTCGGGATTTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
62672 GTGATCCTTATATTTTTGTTGGCATGCACAAAAATATTTAGCTAAAAACTCGAAGTGTACAGGAT
325 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* * * *
62737 TTTGTGACTATTTCAAAAAAGTGTCCTCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
62802 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* **
62867 TATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAATCCCCGCCCCCCAATCG-C
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTC
* * *
62931 GGGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGAGCAAAAA
585 -GAAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC-GAGCGAAAA
*** * * *
62996 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTATAACCTTTGGTCCGGTCCGA-
647 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCCGAT
63060 --T---CT-----T--A---C--A--C-TAG--T---AATGAACTCCGTATGCCTAAGTCAACCC
712 CTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
63100 ACGAAATGAGCGTGCGGGCGCTCAGTCGCCCAGAGGGGCAAGATGCGTAAGCCGAGGATTGG-CT
777 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC-
* * * * * * * **
63164 GGG-T-CCCTCCTGTGTGCTACCGATCCTGCTGCCACAACCCTCGATCCAGTCCA
841 GGGTTCCCCT-CTGCGTGCTGCTGATCCTACTACCGCAACCCTCGGTCTGGTCCA
*
63217 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * **
63282 CTACGTCGGCTAGAGAGGCGGGATAAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
63347 ACATCTTCATATTT-TTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
63411 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT-TATTTTTCATGATTTTTGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* **
63475 TTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA-AAGGAGTTTTGGCCCCAAACTTGGTAGATG
261 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
*
63539 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
63604 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
63669 AAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
63734 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCATGGCCCCCAATCG
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC--GCCCCCCAATCG
* * * * *
63799 TCGGAACCCCAATGCCGCCGGTCAGGTTTTCAGCCGATGCTCCGACGATGGTGCCCCGAGTGAAA
583 TCGAAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGAGCG-AA
* * * * *
63864 AAAAAATGCGGCACCAGCACATGCTCGACCCCAACATGTGCACCCGCAACCCTC-AGTCCGGTCT
645 AAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGA-TCCGGTCC
* *
63928 GATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
709 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
63993 CCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCACAAGCCGAGGATCGG
774 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGG
* * * * * ** * *
64058 TCGGGTTCCCCTCTTCTTGTTGCTGATTCTTCTACCATAACCTTCGGTCTGGTCCG
839 TCGGGTTCCCCTCTGCGTGCTGCTGATCCTACTACCGCAACCCTCGGTCTGGTCCA
*
64114 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * * * *
64179 CTACGTCGGCCAAAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
64244 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
64309 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTACTTTTCACGATTTTTGACACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * * *
64374 TTTTACGGTTTGGGATTTTTTTTAAATTTTTCCTGAAGGATTTTTGGCCCCAAACTTGGTAGACA
261 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
* *
64439 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGTAGTGTACAGGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
* * *
64504 TTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGAAACTTTAATGGCTATTGGCAGCAAAACCTG
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AAACCTG
*
64569 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
64634 TATAAGGGCCAAGTACCAACACCCATTGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGT
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGCCCCCCAATCGT
*
64699 CGAAACCCCAATGCCGCAGGTCAGGTTCTCC-AGCGATGCTCCGACGATAGTGCCTCGAGCG-AA
584 CGAAACCCCAATGCCGC-GGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCC-CGAGCGAAA
** * * * * * * *
64762 AAAAATACGACACCAGCACATGCCCGAGGCTAGCATGTGCACCTGCCACCCTCGATCCAGTCCAA
646 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCCGA
*
64827 TGTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
711 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
64892 CATGAAACGAGCGTGCGGGCGCTCAGCAGGCCAAAGGGGCAGGATGCGCAAGCCGGGGATCGGTC
776 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC
* * ** *** * * *
64957 GGG-TCCCC-CTACGTGCTACCAATCC-AGCTGGTGCAACCCTCGGTTTGATCCT
841 GGGTTCCCCTCTGCGTGCTGCTGATCCTA-CTACCGCAACCCTCGGTCTGGTCCA
* * * *
65009 ATCTTAGACTGAGAATGAACGT-CGTATGCCTAATCCAATCGACGAAACGAGCGGGCGGGAGGGC
1 ATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * * * *
65073 ACTGCGCTGGCAAAAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
65 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
65138 CACATCTTCATATTTCTGCCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
130 CACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * * *
65203 CTAAGCCTT-ACTGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCATGATTTCTAAAA
195 TTAAGCCTTCA-TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
65267 CTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGG
259 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
65332 CATGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
324 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
* * *
65397 TTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGAAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
65462 GTAAAATCTGAAATGCTCTTTAAGGGGATGTGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
65527 ATATAAGGGCTAAGGACCAGCACCCAACGCACATCATGTGCGCACACCCCCC-ACCCCCAATCGT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGT
* * *
65591 C-AGAACCCCAATAGCCGCCGCTCAGGTTCTCCGTCGATGGT-C--C-------CCCGAGCGAAA
584 CGA-AACCCCAAT-GCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGAGCGAAA
* * * *
65645 AAAAATGTGGCACCAGCACATGCCCGAGCCCAACATGTGCACCCGCAACCCACGGTCCGGTCTGA
646 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCCGA
*
65710 TCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG-ACTGCCTAAGTCAAC
711 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA-TGCCTAAGTCAAC
* * * * *
65774 CTACGAAACGAGCGTGCGGGTGCTCAG-CTGCCAGCA-GGGCAGGATGCACAAGCTGGGGATCGG
775 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCAGGATGCGCAAGCCGGGGATCGG
* * * * ** * * **
65837 TCGGG-TCCCCCCTGCGTGCTACCGATCCTTCTATTGTAACCCTCGGTCCGGTCTG
839 TCGGGTTCCCCTCTGCGTGCTGCTGATCCTACTACCGCAACCCTCGGTCTGGTCCA
* **
65892 ATCTTTGATCT-GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AGGCGGGCGGGTAGG
1 ATCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-GCGGGCGGGCGGG
*
65955 CACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
64 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
66020 GCACATCTTCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
129 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
66085 CTCAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTCAAA
194 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* ** * * *
66150 CTTTTTACGGTTCGAGATTTTTTTTTTAATTTTTTAAGAAGGTGTTTTGGCACCAAACTTGGTAG
259 CTTTTTACGGTTCGGGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
66215 ACATGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAACCT-GAAAGTGTACAG
323 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAG
* *
66279 GATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
66344 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGGGGGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* **
66409 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCTGCAATC
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATC
* * * * * *
66474 GTC-AGAACCCCAATCCCGCCGCTCAGGTTCTTCGTCGATGGT-C--C-------CCCGAACGAA
582 GTCGA-AACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGAGCGAA
* * * * *
66528 AAAAAATGTGGCACCAACAGATGCCCGAGCCCAGCATGTACACTCACAA-CC-C-AT---G---G
645 AAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCCG
* * *
66584 -TC-T--A----G--T----T-TG-AT-CTTACACTGGGAATGAACTCC-AACTGCCTAAGTCAA
710 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA-TGCCTAAGTCAA
* * * * **
66631 CCCA-GAAAACGAGCGTGCGGGTGCTCAACCGGCCAGCA-GGGTAGGATGCACAAGCTAGGGATC
774 CCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGGCAGGATGCGCAAGCCGGGGATC
* * * * * * * ** **
66694 AGTCGGGTCCCCCCCTGCATGCTACTGATACTTCTACCATAACCCTCGGTCTGGTCTG
837 GGTCGGGTTCCCCTCTGCGTGCTGCTGATCCTACTACCGCAACCCTCGGTCTGGTCCA
*** * * ** * *
66752 ATCTTAGACCAAGAATGAACTCCATATACCTAAGCCAACCGACGAAACGAAAGGGTGGGCAGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
** *
66817 CTACGCCGGCCAGAGAGGTAGGATGCGCAAGCCGTGGATCGATAGGGAGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
66882 ACATCTTAATATTTCTATCC-TGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCT
131 ACATCTTCATATTTCT-GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
66946 TTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
195 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* *
67011 TTTTTACAGCTT-GGGATTTTTTTAAAATTCTTTTCAGAAGGAGTTTTGGCCCCACACTTGGTAG
260 TTTTTAC-GGTTCGGGATTTTTTTAAAATT-TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
67075 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTAAAGG
323 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* *
67140 ATTTTTTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
67205 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTGGAGGTTTGATGAGGGATAGGGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
67270 AATATATGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTGCCCCCCAATCG
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCG
* * *
67335 CCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTACGACGATGGTGCCCTGGGCGAAA
583 TCGAAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC-GAGCGAAA
* * * * * * * *
67400 AAATATGCGGCACCAACACATGCTCGAGCCCAGCATGAGCACCCGCAACCCTCGGTCTGGTCTGA
646 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCCGA
*
67465 TCTTACACTGGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
711 TCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * * *
67530 CATGAAACGAGCGTACAGGCGCTCAGCTGACCAGAAGGGCAAGATG-GACAAGCTGGGGATCGAT
776 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG-CAAGCCGGGGATCGGT
* * * * * * **
67594 TGGG-TCCCTCCCTGTGTGCTGTTGATCCTACTACCGTAACCCTCGAT-TCAATCCA
840 CGGGTTCCC-CTCTGCGTGCTGCTGATCCTACTACCGCAACCCTCGGTCT-GGTCCA
* * * *
67649 ATCTTAGATTGGGAATGAACTCCGTATACCTAAGCCAACCAACGAAACGAGCGGGTGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
*
67714 CTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
67779 ACATCTTCACATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
67844 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * ** *
67909 TTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTAGCCCCACGCTTGGTAGACG
261 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
* * *
67974 TGATCCTTTTATTTTTGTTGGCATGCCCAAAACAATTCAGCTAAAAACTCGAAGTGTACAGGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
* * *
68039 TTGTGACCATTTGATAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
68104 AAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
68169 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATC-ACT
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTC-
** * * *
68233 GAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCAGGTGAAAAA
585 GAAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGA-GCGAAAAA
* * * *
68298 AAATGTGGCACCAGCACATGCCTGAGCCCAGTATGTGCACCCGCAACCCTCGGTCCGATCCGATC
648 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCCGATC
* *
68363 TTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCA
713 TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
68428 CGAAACGAGCGTGCGGGCGTTCAGCCGACGAGAGGGGCAGGATGTGCAAGTCGGGGATCGGTCGG
778 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGG
* * *
68493 GTCCCCCTCTGCGTGTTG-TCGATCCTACTA-CGCAACCCTTGGTCTGGTCCA
843 GTTCCCCTCTGCGTGCTGCT-GATCCTACTACCGCAACCCTCGGTCTGGTCCA
* *
68544 ATCTTAGACTGGGAATGAACTCGGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* *
68609 CTACGCCGGCCAGAGAGGCGGGATGCACAGGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
68674 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATCCACACAATGGTCTCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
68739 TAAGCCTTCATTTAAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTCATGATTTTTGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * *
68804 TTTTACGATTCAGGATTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
261 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
* *
68869 TGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCAAAAAACTCGAAGTGTACAGGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
** *
68934 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTTTTGGCAGCAAACCTAT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
68999 AAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * ****
69064 CTAAGGGCCAAGTACCAGCACCCATCCCACATCATGTGCGCACA-CCCCCG--GGTTAATC-T--
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCG
*** * *** * * ** ** * *
69123 AAGGGCTAAT-CTAAGGGCTA--ATCTAAGGTTTGATGCTTCGACGATGGTGCCCCGAGTGAAAA
586 AAACCCCAATGCCGCGGTC-AGGTTCT-CCG-ACGATGCTCCGACGATGGTG-CCCGAGCGAAAA
* ** * * *
69185 AAAATGTGGCACCAGCACATGTCCGAGCCCAATATGTGCACTCGAAACCCTCGGTCCGGTCCGAT
647 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCCGAT
* * *
69250 CTTACATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCC
712 CTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
69315 ACGAAACGAGCGTGCGGGCGCTCAGTCGGCGAGAGGGGTAAGATGTGCAAGTCGGGGATCGGTCG
777 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCG
* * *
69380 GGTCCCCCTCTGCGTGCTG-TCGATCCTACTACTGCCACCCTCGGTCTGGTCCA
842 GGTTCCCCTCTGCGTGCTGCT-GATCCTACTACCGCAACCCTCGGTCTGGTCCA
* * * * *
69433 ATCTTAGACTGGGAATGAACTCGGTATGCCTAAGCCAATCAACGAAATGAGCAGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * * * *
69498 CTATGCCGGCCAGAGAGGCAGGATGCACAGGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* ** *
69563 ACATCTTAATATTTCTATCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
69628 TAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
*
69693 TTTTACAGCTT-GGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
261 TTTTAC-GGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
69757 ATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACGGGAT
325 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
69822 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
69887 TAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
69952 TATAAGGGCCAAGTACCAGCACCCACCGGACATCATGTGCGCATACCCCCAC-CCCCCCAATTGC
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGCCCCCCAATCGT
* * *
70016 CGGAACCCCCAATGCCGTCGGTCAGGTTCTCCGACGATGTTCCGGCGATGGTGCCCCGAGC-AAA
584 C-GAAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGAGCGAAA
** * * * *
70080 AAAAAAATGGCACCAGCACATTCCTGAGCCCATCATGTGCACCCGCAACCCTC-AGTCTGGTCCG
646 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGA-TCCGGTCCG
* *
70144 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACT-CGAATGAACTCCATATGCCTAAGTCAAC
710 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
70208 CCACGAAATGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCAGGATACGCAAGTCGGGGATCGGC
775 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGT
* * * * * ** **
70273 CAGGTCCCCCTCTGCGTGCT--TGGATCCTACTGCTGCAACCCTCAGTCCAGTCTT
840 CGGGTTCCCCTCTGCGTGCTGCT-GATCCTACTACCGCAACCCTCGGTCTGGTCCA
* *
70327 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGACGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * * *
70392 CTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGAATCGATAGGGTTGTAGGTGGGTTTAGGG
66 CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
70457 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
131 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
70522 TAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * *
70587 TTTTACGATTCGAGA-TTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACG
261 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
70651 TGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
*
70715 TTGTGACCATTTGAAAAAAGTGT-CCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
70779 AAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
70844 ATAAGGG-CAAGTACCAGCACCCATCGCACAT
521 ATAAGGGCCAAGTACCAGCACCCATCGCACAT
70875 TGTCTTAAAG
Statistics
Matches: 6830, Mismatches: 683, Indels: 270
0.88 0.09 0.03
Matches are distributed among these distances:
857 1 0.00
858 58 0.01
859 51 0.01
860 583 0.09
861 10 0.00
863 1 0.00
865 1 0.00
866 256 0.04
867 17 0.00
868 41 0.01
869 148 0.02
870 200 0.03
871 47 0.01
872 2 0.00
873 3 0.00
874 3 0.00
875 1 0.00
876 2 0.00
877 1 0.00
878 1 0.00
880 1 0.00
881 4 0.00
882 50 0.01
883 420 0.06
884 357 0.05
885 21 0.00
886 3 0.00
887 4 0.00
888 243 0.04
889 552 0.08
890 32 0.00
891 115 0.02
892 87 0.01
893 106 0.02
894 393 0.06
895 1071 0.16
896 720 0.11
897 746 0.11
898 102 0.01
899 113 0.02
900 143 0.02
901 120 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
CTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCG
AAACCCCAATGCCGCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCGAGCGAAAAAAAA
TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGATCCGGTCCGATCTTA
CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTT
CCCCTCTGCGTGCTGCTGATCCTACTACCGCAACCCTCGGTCTGGTCCA
Found at i:67501 original size:26 final size:26
Alignment explanation
Indices: 67465--67516 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
67455 TCTGGTCTGA
67465 TCTTACACTGGGAATGAACTCCGTAT
1 TCTTACACTGGGAATGAACTCCGTAT
*
67491 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTACACTGGGAATGAACTCCGTAT
67517 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
TCTTACACTGGGAATGAACTCCGTAT
Found at i:69134 original size:12 final size:12
Alignment explanation
Indices: 69117--69150 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
69107 ACCCCCGGGT
69117 TAATCTAAGGGC
1 TAATCTAAGGGC
69129 TAATCTAAGGGC
1 TAATCTAAGGGC
69141 TAATCTAAGG
1 TAATCTAAGG
69151 TTTGATGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (12 bp):
TAATCTAAGGGC
Found at i:70175 original size:26 final size:25
Alignment explanation
Indices: 70146--70197 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
70136 CTGGTCCGAT
* *
70146 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACT-CGAATGAACTCCATATG
*
70172 CTTAGACTCGAATGAACTCCATATG
1 CTTACACTCGAATGAACTCCATATG
70197 C
1 C
70198 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
CTTACACTCGAATGAACTCCATATG
Found at i:71874 original size:17 final size:16
Alignment explanation
Indices: 71852--71890 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
71842 GATTTTAAGA
71852 GGTTTTGAATTTTAGG
1 GGTTTTGAATTTTAGG
*
71868 GGATTTTGGATTTTAGG
1 GG-TTTTGAATTTTAGG
71885 GGTTTT
1 GGTTTT
71891 AAAAACTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 6 0.29
17 15 0.71
ACGTcount: A:0.15, C:0.00, G:0.33, T:0.51
Consensus pattern (16 bp):
GGTTTTGAATTTTAGG
Found at i:72329 original size:17 final size:17
Alignment explanation
Indices: 72285--72334 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
72275 AAATATACTT
*
72285 AAAATAACAAAAA-TAA
1 AAAATAAAAAAAATTAA
*
72301 AATAATATAAAAAAATTAG
1 AA-AATA-AAAAAAATTAA
72320 AAAATAAAAAAAATT
1 AAAATAAAAAAAATT
72335 TTTTTACCTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 2 0.07
17 13 0.45
18 10 0.34
19 4 0.14
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (17 bp):
AAAATAAAAAAAATTAA
Found at i:73650 original size:88 final size:87
Alignment explanation
Indices: 73433--73656 Score: 286
Period size: 88 Copynumber: 2.6 Consensus size: 87
73423 AAAAATAATA
* * * *
73433 AATCGATCGAGATAACACACGTGAATCAAAATTATGCCCGGAGGTCTTACAGAATAGACTGGGAT
1 AATCGATCGGGATAACAC-CGTGAATCAAAATTATGTCCGAAGGTCTTACAAAATAGACTGGGAT
* *
73498 AAGATCGTGGTCAAAAGATAAAG
65 AACATCGTAGTCAAAAGATAAAG
* * * * *
73521 AATCAATCGGGATAACACTGCGAATCAAAATTATGTCCGAAGGTCTTACAAAATCGATTGGGATA
1 AATCGATCGGGATAACACCGTGAATCAAAATTATGTCCGAAGGTCTTACAAAATAGACTGGGATA
*
73586 ACATCGTAAGTCAAAAGATAAGG
66 ACATCGT-AGTCAAAAGATAAAG
* * * *
73609 AATCGATTGGGATAGCACCGTGAATCAAAATTACGTTCGAAGGTCTTA
1 AATCGATCGGGATAACACCGTGAATCAAAATTATGTCCGAAGGTCTTA
73657 AGAATCATAC
Statistics
Matches: 116, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
87 46 0.40
88 70 0.60
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (87 bp):
AATCGATCGGGATAACACCGTGAATCAAAATTATGTCCGAAGGTCTTACAAAATAGACTGGGATA
ACATCGTAGTCAAAAGATAAAG
Found at i:73817 original size:133 final size:131
Alignment explanation
Indices: 73561--73927 Score: 416
Period size: 133 Copynumber: 2.8 Consensus size: 131
73551 TTATGTCCGA
* * * * *
73561 AGGTCTTACAAAATCGATTGGGATAACATCGTAAGTCAAAAGATAAGGAATCGATTGGGATAGCA
1 AGGTCTTACAGAATCGACT-GGATAACATCGTAAGTCAAAAGATAAAGAATCGATCGGGATAACA
* * * * * *
73626 CCGTGAATCAAAATTACG-TTCGAAGGTCTTAAGAATCATACCTAGAGGTTTTATAGAATCATGC
65 CCGCGAATCAAAATTATGCCT-GAAGGTCTTAA-AATCATACCGAGAGGTCTTACAGAATCATGC
73690 CCGG
128 CCGG
* *
73694 AGGTCTTACAGAATCGACTGAAATAAAATCGTAAGTCAAAAGATAAAGAATCGATCGGGATAACA
1 AGGTCTTACAGAATCGACTG-GATAACATCGTAAGTCAAAAGATAAAGAATCGATCGGGATAACA
* * *
73759 CCGCGAATCAAAATTATGCCTGGAGGTCTTAGAAATCGTGCTCGA-AGGTCTTACAGAATCATGC
65 CCGCGAATCAAAATTATGCCTGAAGGTCTTA-AAATCATAC-CGAGAGGTCTTACAGAATCATGC
73823 CCGG
128 CCGG
* * * * * *
73827 AGGTCTTACAGAATTGACTCGGGTAACATCGCAAGTCAAAA-ATAAAAAATCGATCGAGACAACA
1 AGGTCTTACAGAATCGACT-GGATAACATCGTAAGTCAAAAGATAAAGAATCGATCGGGATAACA
* * *
73891 CCGCAAATCGAAATTATGCCCGAAGGTCTTACAAATC
65 CCGCGAATCAAAATTATGCCTGAAGGTCTTA-AAATC
73928 TCAAAATCTT
Statistics
Matches: 200, Mismatches: 29, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
132 53 0.26
133 142 0.71
134 5 0.03
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.23
Consensus pattern (131 bp):
AGGTCTTACAGAATCGACTGGATAACATCGTAAGTCAAAAGATAAAGAATCGATCGGGATAACAC
CGCGAATCAAAATTATGCCTGAAGGTCTTAAAATCATACCGAGAGGTCTTACAGAATCATGCCCG
G
Found at i:73830 original size:23 final size:23
Alignment explanation
Indices: 73774--73840 Score: 82
Period size: 23 Copynumber: 3.0 Consensus size: 23
73764 AATCAAAATT
* *
73774 ATGCCTGGAGGTCTTAGA-AATC
1 ATGCCCGGAGGTCTTACAGAATC
* * *
73796 GTGCTCGAAGGTCTTACAGAATC
1 ATGCCCGGAGGTCTTACAGAATC
73819 ATGCCCGGAGGTCTTACAGAAT
1 ATGCCCGGAGGTCTTACAGAAT
73841 TGACTCGGGT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 13 0.36
23 23 0.64
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (23 bp):
ATGCCCGGAGGTCTTACAGAATC
Found at i:74406 original size:15 final size:15
Alignment explanation
Indices: 74386--74414 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74376 CTTGTGCAAG
74386 TGCAAATGCAAATGA
1 TGCAAATGCAAATGA
74401 TGCAAATGCAAATG
1 TGCAAATGCAAATG
74415 TCTTTCTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.21
Consensus pattern (15 bp):
TGCAAATGCAAATGA
Found at i:74711 original size:33 final size:32
Alignment explanation
Indices: 74632--74975 Score: 297
Period size: 33 Copynumber: 10.5 Consensus size: 32
74622 TTGGGGCTAA
* *
74632 ATAAACTTGGCTTAAAT-TT-ATTGAAGGCTAG
1 ATAAACTGGGCTTAAATCTTCATTGAA-GCCAG
*
74663 CTAAACTGGGCTTAAATCTTCATTTGAAGCCAG
1 ATAAACTGGGCTTAAATCTTCA-TTGAAGCCAG
* * * * *
74696 ATAAACTAGGTTTAAAACCTCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
* * *
74729 ATGAATTGGGCTTAAAGCTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
*
74762 ATAAATTGGGCTTAAAGT-TTCATTGAGAGCCAG
1 ATAAACTGGGCTTAAA-TCTTCATTGA-AGCCAG
*
74795 ATAAACTGGGCTTAAAGCTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
* * *
74828 ATAAACTAGGCTTAAAT-ATCATTGATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
* * * *
74860 ATAAATTGGGCTTAAATATTCATTTGAGGCCAT
1 ATAAACTGGGCTTAAATCTTCA-TTGAAGCCAG
* * *
74893 ATAAACTGGGCTTAAATTTTCATTGATGGCTAG
1 ATAAACTGGGCTTAAATCTTCATTGA-AGCCAG
*
74926 ATAAACTGGGCTTAAAACTTCATT-AATGGCCAG
1 ATAAACTGGGCTTAAATCTTCATTGAA--GCCAG
74959 ATAAACTGGGCTTAAAT
1 ATAAACTGGGCTTAAAT
74976 TTTATTTTAT
Statistics
Matches: 257, Mismatches: 37, Indels: 36
0.78 0.11 0.11
Matches are distributed among these distances:
31 16 0.06
32 38 0.15
33 192 0.75
34 10 0.04
35 1 0.00
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (32 bp):
ATAAACTGGGCTTAAATCTTCATTGAAGCCAG
Found at i:74903 original size:131 final size:131
Alignment explanation
Indices: 74632--74975 Score: 443
Period size: 131 Copynumber: 2.6 Consensus size: 131
74622 TTGGGGCTAA
* * *
74632 ATAAACTTGGCTTAAATTT-ATTGA-AGGCTAGCTAAACTGGGCTTAAATCTTCATT--TGAAGC
1 ATAAACTGGGCTTAAATTTCATTGAGA-GCTAGATAAACTGGGCTTAAAACTTCATTAATG--GC
* * *
74693 CAGATAAACTAGGTTTAAA-ACCTCATTGATGGCCAGATGAATTGGGCTTAAAGCTTCATTAATG
63 CAGATAAACTAGGCTTAAATA-CTCATTGATGGCCAGATAAATTGGGCTTAAAGATTCATTAATG
74757 GCCAG
127 GCCAG
* * *
74762 ATAAATTGGGCTTAAAGTTTCATTGAGAGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCCA
1 ATAAACTGGGCTTAAA-TTTCATTGAGAGCTAGATAAACTGGGCTTAAAACTTCATTAATGGCCA
* *
74827 GATAAACTAGGCTTAAATA-TCATTGATGGCCAGATAAATTGGGCTTAAATATTCATTTGA-GGC
65 GATAAACTAGGCTTAAATACTCATTGATGGCCAGATAAATTGGGCTTAAAGATTCA-TTAATGGC
*
74890 CAT
129 CAG
74893 ATAAACTGGGCTTAAATTTTCATTGATG-GCTAGATAAACTGGGCTTAAAACTTCATTAATGGCC
1 ATAAACTGGGCTTAAA-TTTCATTGA-GAGCTAGATAAACTGGGCTTAAAACTTCATTAATGGCC
*
74957 AGATAAACTGGGCTTAAAT
64 AGATAAACTAGGCTTAAAT
74976 TTTATTTTAT
Statistics
Matches: 190, Mismatches: 16, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
130 14 0.07
131 117 0.62
132 55 0.29
133 2 0.01
134 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (131 bp):
ATAAACTGGGCTTAAATTTCATTGAGAGCTAGATAAACTGGGCTTAAAACTTCATTAATGGCCAG
ATAAACTAGGCTTAAATACTCATTGATGGCCAGATAAATTGGGCTTAAAGATTCATTAATGGCCA
G
Found at i:74978 original size:66 final size:65
Alignment explanation
Indices: 74632--74977 Score: 398
Period size: 66 Copynumber: 5.3 Consensus size: 65
74622 TTGGGGCTAA
* * * * *
74632 ATAAACTTGGCTTAAATTT-ATTGAAGGCTAGCTAAACTGGGCTTAAATCTTCATT--TGAAGCC
1 ATAAACTGGGCTTAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAACTTCATTAATG--GCC
74694 AG
64 AG
* * ** * * *
74696 ATAAACTAGGTTTAAAACCTCATTGATGGCCAGATGAATTGGGCTTAAAGCTTCATTAATGGCCA
1 ATAAACTGGGCTT-AAATTTCATTGATGGCCAGATAAACTGGGCTTAAAACTTCATTAATGGCCA
74761 G
65 G
* *
74762 ATAAATTGGGCTTAAAGTTTCATTGA-GAGCCAGATAAACTGGGCTTAAAGCTTCATTAATGGCC
1 ATAAACTGGGCTTAAA-TTTCATTGATG-GCCAGATAAACTGGGCTTAAAACTTCATTAATGGCC
74826 AG
64 AG
* * * *
74828 ATAAACTAGGCTTAAATATCATTGATGGCCAGATAAATTGGGCTTAAATA-TTCATTTGA-GGCC
1 ATAAACTGGGCTTAAATTTCATTGATGGCCAGATAAACTGGGCTTAAA-ACTTCA-TTAATGGCC
*
74891 AT
64 AG
*
74893 ATAAACTGGGCTTAAATTTTCATTGATGGCTAGATAAACTGGGCTTAAAACTTCATTAATGGCCA
1 ATAAACTGGGCTTAAA-TTTCATTGATGGCCAGATAAACTGGGCTTAAAACTTCATTAATGGCCA
74958 G
65 G
74959 ATAAACTGGGCTTAAATTT
1 ATAAACTGGGCTTAAATTT
74978 TATTTTATTT
Statistics
Matches: 240, Mismatches: 30, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
64 11 0.05
65 67 0.28
66 160 0.67
68 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (65 bp):
ATAAACTGGGCTTAAATTTCATTGATGGCCAGATAAACTGGGCTTAAAACTTCATTAATGGCCAG
Found at i:74984 original size:5 final size:5
Alignment explanation
Indices: 74974--75004 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
74964 CTGGGCTTAA
74974 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT A
75005 GAATTTGGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:76203 original size:9 final size:9
Alignment explanation
Indices: 76189--76233 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
76179 GTCATAACAA
76189 TTTTTTTTC
1 TTTTTTTTC
76198 TTTTTTTTC
1 TTTTTTTTC
*
76207 TCTTTTTTTG
1 T-TTTTTTTC
* *
76217 TTGTTTTTA
1 TTTTTTTTC
76226 TTTTTTTT
1 TTTTTTTT
76234 ATGCCCCATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
9 23 0.74
10 8 0.26
ACGTcount: A:0.02, C:0.07, G:0.04, T:0.87
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:76214 original size:19 final size:18
Alignment explanation
Indices: 76188--76233 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
76178 TGTCATAACA
*
76188 ATTTTTTTTCTTTTTTTT
1 ATTTTTTTTCTTGTTTTT
* *
76206 CTCTTTTTTTGTTGTTTTT
1 AT-TTTTTTTCTTGTTTTT
76225 ATTTTTTTT
1 ATTTTTTTT
76234 ATGCCCCATA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.04, C:0.07, G:0.04, T:0.85
Consensus pattern (18 bp):
ATTTTTTTTCTTGTTTTT
Found at i:77849 original size:26 final size:26
Alignment explanation
Indices: 77819--77871 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
77809 TTTGACTTAG
77819 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
77845 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
77871 G
1 G
77872 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:78091 original size:248 final size:248
Alignment explanation
Indices: 77637--78126 Score: 608
Period size: 248 Copynumber: 2.0 Consensus size: 248
77627 CCACCCGCCT
* * * *
77637 GCTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAA
1 GCTCGTTTCATCGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
* * * * * *** * *
77702 GGGTTGCAGTAGTAGGATCGACAGCAGGTAAGGAGGGACTTGATCGATCTCTGACTTGCGCATCC
66 GGGATACAGTAGCAGGATCGACAGCACGCAAGGAGGGACCCAATCGATCCCCGACTTGCGCATCC
* * * * * *
77767 TGCCCTTCTGGCTGGCTGCGTGCCCGCAGGCTCATTTCATGCTTTGACTTAGGCATACAGAGTTC
131 TACCCCTCTGGCTGGCTGAGGGCCCGCACGCTCATTTCATGCGTTGACTTAGGCATACAGAGTTC
* * *
77832 ATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTGTAAGATTGGACCGGACC
196 ATTCCCAGTCTAAGCATACGGAGTACATTCCCAGTGTAAGATCGGACCGGACC
* * *
77885 GCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGA
1 GCTCGTTTCATCGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
* * * *
77950 GGGATACAGTAGCAGGATCGGCAGCACGCAAGGGGGGACCCAATTGATCCCCGGCTTGCGCATCC
66 GGGATACAGTAGCAGGATCGACAGCACGCAAGGAGGGACCCAATCGATCCCCGACTTGCGCATCC
* * * *
78015 TACCCCTCTGGCTGGCTGAGGGGCTGCACG-TGCATTTTC-TAG-GTTGACTTCGGCATACGGAG
131 TACCCCTCTGGCTGGCTGAGGGCCCGCACGCT-CA-TTTCAT-GCGTTGACTTAGGCATACAGAG
* *
78077 TTTATTCTCAGTCTAAGCATACGGAGTACATTCCCAGTGTAAGATCGGAC
193 TTCATTCCCAGTCTAAGCATACGGAGTACATTCCCAGTGTAAGATCGGAC
78127 TAGATCGAGG
Statistics
Matches: 203, Mismatches: 36, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
247 1 0.00
248 197 0.97
249 5 0.02
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (248 bp):
GCTCGTTTCATCGGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAA
GGGATACAGTAGCAGGATCGACAGCACGCAAGGAGGGACCCAATCGATCCCCGACTTGCGCATCC
TACCCCTCTGGCTGGCTGAGGGCCCGCACGCTCATTTCATGCGTTGACTTAGGCATACAGAGTTC
ATTCCCAGTCTAAGCATACGGAGTACATTCCCAGTGTAAGATCGGACCGGACC
Found at i:78109 original size:26 final size:26
Alignment explanation
Indices: 78067--78119 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
78057 GTTGACTTCG
** *
78067 GCATACGGAGTTTATTCTCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
*
78093 GCATACGGAGTACATTCCCAGTGTAA
1 GCATACGGAGTACATTCCCAGTCTAA
78119 G
1 G
78120 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:79609 original size:902 final size:876
Alignment explanation
Indices: 77886--79946 Score: 2656
Period size: 902 Copynumber: 2.3 Consensus size: 876
77876 GACCGGACCG
* * *
77886 CTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGA
1 CTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACC-GACT-GA
* * * * ** * *
77950 GGGATACAGTAGCAGGATCGGCAGCACGCAAGGGGGGACCCAATTGATCCCCGGCTTGCGCATCC
64 GGG-TTCAGCAGTAGGATCGGCAGCATGC-AGGGGGGA-CCGGTCGATCCCTGGCTTGCGCATCC
* * * * *
78015 TACCCCTCTGG-CTGGCTGAGGGGCTGCACG-TGCATTTTCTAGGTTGACTTCGGCATACGGAGT
126 TACCCCTCTGGTC-GGCTGAGCGCCCGCACGCT-CA-TTTCTGGGTTGACTTAGGCATACGGAGT
* * * * * *
78078 TTATTCTCAGTCTAAGCATACGGAGTACATTCCCAGTGTAAGATCGGACTAGATCGAGGGTTACG
188 TCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGGAC-CGATCGAGGGTTGCG
* *
78143 GGTGCACATGCTGGGCTCGAGCATGTGCTGGCGCCGCTTTTTTTTTCTCCTAGGGCACCATCGTC
252 GGTGCACATGCTGGGCTCGGGCATGTGCTGGCGCCGCTTTTTTTTTCGCCTAGGGCACCATCGTC
* *
78208 GGAGCATCGCTGGAGAACCTGACCAGCGGCATTGGGGGGGGCGGGGGGCTTGTGCGCACATGATG
317 GGAGCATCGCTGGAGAACCTGACCAGCGGCATTAGGGGGGGCGGGGGGC-TGTGCACACATGATG
** * * * * * *
78273 TGTGATGGGTGCTGGTGCTTGGCCCTTATATTTGCCCCCTATCCCTCATTAAACCTCGAGAACTC
381 TGCAATGGGCGCTAGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
78338 ACCACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAA
446 ACCACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTACCCATTAAAGTGTCTGAA
*
78403 ATGAGGACACTTTTTCAAATGATCACAAAAAACTGTACATTTTGAGTTTTAGCTGAATTGTTTTG
511 ATGAGGACACTTTTTCAAATGATCACAAAAAACTGTACACTTTGAGTTTTAGCTGAATTGTTTTG
* * * *
78468 TGCATGCCAACAAAAATACAAGGATGACGTCTACAAAGTTTGGGGCCAAAAATCCATCTAAAAGA
576 TGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTAGGGCAAAAAATCCATATAAAAGA
* *
78533 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAATGAGTCGTCT
641 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCT
78598 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
706 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
78663 ATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCATAGCTTG
771 ATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACAGCTTG
* * * *
78728 CGCATCCTGCCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CTG
836 CACATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCCCGCGC-A
* * *
78769 CTCGTTTTGTCAGTTGGCTTAGGCATACAGAGTTCATTCCAAGTCTAAAATCAAACCGCACTGAG
1 CTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCG-ACTGAG
* * *
78834 GGTTGCAGCAATAGGATCGGTAGCATGCAGGGGGGAACTTGGTCGATCCCTGGCTTGCGCATCCT
65 GGTT-CAGCAGTAGGATCGGCAGCATGCAGGGGGG-AC-CGGTCGATCCCTGGCTTGCGCATCCT
* * * *
78899 GCCCCTCTGGTCGGCTCAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCA
127 ACCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTC-TGGGTTGACTTAGGCATACGGAGTTCA
* * *
78964 TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCAGACCGCA-CTGAGGGTTGCAGA
191 TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGGACCG-ATC-GAGGGTTGCGGG
* * *
79028 TGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTTTCGCCTGGGGCACCATCGTC
254 TGCACATGCTGGGCTCGGGCATGTGCTGGCGCCGC--TTTTTTTTTCGCCTAGGGCACCATCGTC
* *
79093 GGAGCATCGTTGGAGAACCTGACTGGTGGCCATTGGGGTTCTGGTGATTAGGGGGGGCGGGGGG-
317 GGAGCATCGCTGGAGAACCTGA-------CCA-----G--C-GG-CATTAGGGGGGGCGGGGGGC
79157 TGTGCACACATGA-GCTGCAATGGGCGCTAGTACTAGGCCCTTATATTGGCCCCCTATCCCTCAT
366 TGTGCACACATGATG-TGCAATGGGCGCTAGTACTAGGCCCTTATATTGGCCCCCTATCCCTCAT
*
79221 CAAACCTCGAGAACTCA-CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAG
430 CAAACCTCGAGAACTCACCA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAC
* * * **
79285 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCTCAAAATCCTGTACACTTTGAGT
494 CCATTAAAGTGTCTGAAATGAGGACAC-TTTTTCAAATGATCACAAAAAACTGTACACTTTGAG-
* *
79350 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGC
557 TTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTAGGGC
* * * *
79415 GAAAAAATCCATATGAAAA-AATTTTAAAAAATTCTTGAGCTGTAAAAAGTTTCAAAAATCGTGA
622 -AAAAAATCCATAT-AAAAGAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGA
* * *
79479 AAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACATGAGGGCTTAAGGGACCATTGTATGAA
685 AAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
79544 TTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
750 TTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
79609 AACCTGTCGATCCACGGCTTGCACATCCCGCCTCTCTAGTCGGCGTAGTGCCCGCCCGCGCA
815 AACCTATCGATCCACAGCTTGCACATCCCGCCTCTCTAGCCGGCGTAGTGCCCGCCCGCGCA
* ** * * * *
79671 CTTGTTTCGTCAGTTGGCTTAGGCATATGGGGTTCATTCCCAGTCTAAGATGAGATCAGACTGAG
1 CTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCA-AACCGACTGAG
* * * *
79736 AGTTCTGGCAGTAGGA-CTGGGAGCATGCAGGGGAGGACCGGATCGATCCCTGGCTTGTGCATCC
65 GGTTC-AGCAGTAGGATC-GGCAGCATGCAGGGG-GGACCGG-TCGATCCCTGGCTTGCGCATCC
* * *
79800 TACCCCTCT-ATCCAGCTGAGCGCCCGCACGCTCATTTCGTGGTTTGACTTAGGCATACGGAGTT
126 TACCCCTCTGGT-CGGCTGAGCGCCCGCACGCTCATTTC-TGGGTTGACTTAGGCATACGGAGTT
* * * *
79864 CATT-CTATTCTAAGCATAC-AGAGTTCACT-CCGGTGTAAGATCGGACCGGATCGAGGGTTGCG
189 CATTCCCAGTCTAAGCATACGA-AGTTCATTCCCAGTGTAAGATCGGACC-GATCGAGGGTTGCG
79926 GGTGCACATGCTGGGCTCGGG
252 GGTGCACATGCTGGGCTCGGG
79947 GGGTGCGCAC
Statistics
Matches: 1020, Mismatches: 114, Indels: 71
0.85 0.09 0.06
Matches are distributed among these distances:
882 16 0.02
883 227 0.22
884 3 0.00
885 47 0.05
892 3 0.00
897 1 0.00
898 3 0.00
899 139 0.14
900 80 0.08
901 105 0.10
902 386 0.38
903 10 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (876 bp):
CTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCGACTGAGG
GTTCAGCAGTAGGATCGGCAGCATGCAGGGGGGACCGGTCGATCCCTGGCTTGCGCATCCTACCC
CTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGCATACGAAGTTCATTCCCAGTGTAAGATCGGACCGATCGAGGGTTGCGGGTGCACAT
GCTGGGCTCGGGCATGTGCTGGCGCCGCTTTTTTTTTCGCCTAGGGCACCATCGTCGGAGCATCG
CTGGAGAACCTGACCAGCGGCATTAGGGGGGGCGGGGGGCTGTGCACACATGATGTGCAATGGGC
GCTAGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACCACCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTACCCATTAAAGTGTCTGAAATGAGGACAC
TTTTTCAAATGATCACAAAAAACTGTACACTTTGAGTTTTAGCTGAATTGTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACAAAGTTTAGGGCAAAAAATCCATATAAAAGAATTTTAAAAA
AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
CAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACAGCTTGCACATCCCGC
CTCTCTAGCCGGCGTAGTGCCCGCCCGCGCA
Found at i:82160 original size:826 final size:823
Alignment explanation
Indices: 80550--82168 Score: 2485
Period size: 826 Copynumber: 2.0 Consensus size: 823
80540 GGACGGGATC
* *
80550 GATCCCCAACTTGCGCATCCTACCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTT
1 GATCCCCAACTTGCGCATCCTACCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTAGGTT
* *
80615 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCGATGTAAGATCGG
66 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGAATACAGAGTTCATTCCCGACGTAAGATCGG
* * * *
80680 ACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCCCATTTTTTTCG
131 ACCGGACCGAGGGTAACGGGTGCACATGCTGGGCTCGAGAATGTGCTGGTGCCACATTTTTTTCG
* ** * * * * * * *
80745 CCCGGGGCACCATTGCCGGAGCGTTGCCGGAGAACTTGACCAACGGGATTGGGGTTCCGGCGATT
196 CCCGAGGCACCATCACCGGAGCATTGCCAGAGAACCTGACCAACGGCACTAGGGTTCCGACGATT
* * *
80810 GGGGGGCGGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCA
261 GGGGAGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCA
*
80875 CCTATCCCGCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
326 CCTATCCCGCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
80940 GATGCTAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCCTGT
391 GATGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCCTGT
* * **
81005 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCTACA
456 ACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACA
* * **
81070 AAGTTTGGGGCCGAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACTGTAAAAAGTTTCAA
521 AAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCATAAAAAGTTTCAA
** *
81135 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
586 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACAACAAATGAAGGCTTAAGGGACCA
*
81200 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAAAAATATGAAGATGTGCCTAAAC
651 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAAAAATATGAAGATGTACCTAAAC
* *
81265 CCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCACCTCTCTGGCCGGCATGGTGCCCACC
716 CCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCACCTCTCTAGCCAGCATGGTGCCCACC
81330 CGCCCGCTCGTTTGATTGGACCGGACGTAGGGGGGACCCGGCT
781 CGCCCGCTCGTTTGATTGGACCGGACGTAGGGGGGACCCGGCT
* * * * * *
81373 GATCGCCAGCTTGCGCATTCTA-CCCTCTGGCTGGCTGAGCGCTCGCACGCTCATTTCGTAGGTT
1 GATCCCCAACTTGCGCATCCTACCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTAGGTT
*
81437 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGAATA-TGAAGTTCATTCCC-AGCGTAAGATC
66 GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGAATACAG-AGTTCATTCCCGA-CGTAAGATC
**
81500 GGACCGGACCGAGGGTAACGGGTGCATGTGCTGGGCTCGAGAATGTGCTGGTGCCACATTTTTTT
129 GGACCGGACCGAGGGTAACGGGTGCACATGCTGGGCTCGAGAATGTGCTGGTGCCACA-TTTTTT
* * *
81565 TCGCCCGAGGCACCATCACCGGAGCATCT-CCAGAGAACCTGATCGACGGCACTAGGGTTCCGAT
193 TCGCCCGAGGCACCATCACCGGAGCAT-TGCCAGAGAACCTGACCAACGGCACTAGGGTTCCGAC
*
81629 GATTGGGGTAGCAGAGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
257 GATTGGGG-AGC-G-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATA
*
81694 TTGGGCC-CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
319 TT-GGCCACCTATCCCGCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* * * *
81758 ACAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
383 ACAGGTTTGATGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGCTCACAA
*
81823 AATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCA
448 AATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * ** *
81888 CCTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATGCTGAACCATCAAA
513 CCTCTACAAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCATAAAA
* * *
81953 AGTTTCAAAATTCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACAACAAATGAAGGCTTA
578 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACAACAAATGAAGGCTTA
* *
82018 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGGAAGAAATATGAAGATG
643 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAA-AAATATGAAGATG
* * *
82082 TACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGCCAGCATT
707 TACCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCACCTCTCTAGCCAGCATG
*
82147 GTGCCCGCCCGCCCGCTCGTTT
772 GTGCCCACCCGCCCGCTCGTTT
82169 CATCGGGTAG
Statistics
Matches: 717, Mismatches: 70, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
821 2 0.00
822 145 0.20
823 82 0.11
824 3 0.00
825 4 0.01
826 477 0.67
827 4 0.01
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (823 bp):
GATCCCCAACTTGCGCATCCTACCCCTCTGGCCGGCTGAGCACCCGCACGCTCATTTCGTAGGTT
GACTTAGGCATACGGAGTTCATTCCTAGTCTAAGAATACAGAGTTCATTCCCGACGTAAGATCGG
ACCGGACCGAGGGTAACGGGTGCACATGCTGGGCTCGAGAATGTGCTGGTGCCACATTTTTTTCG
CCCGAGGCACCATCACCGGAGCATTGCCAGAGAACCTGACCAACGGCACTAGGGTTCCGACGATT
GGGGAGCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATATTGGCCA
CCTATCCCGCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GATGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCCTGT
ACACTTCGAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACA
AAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCATAAAAAGTTTCAA
AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACAACAAATGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGCAAAAATATGAAGATGTACCTAAAC
CCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCACCTCTCTAGCCAGCATGGTGCCCACC
CGCCCGCTCGTTTGATTGGACCGGACGTAGGGGGGACCCGGCT
Found at i:82379 original size:26 final size:26
Alignment explanation
Indices: 82342--82394 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
82332 GTTGACTTAG
82342 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
82368 GCATAC-GAAGTTCATTCCCAGTGTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
82394 G
1 G
82395 ATCGGAACAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:84137 original size:26 final size:26
Alignment explanation
Indices: 84101--84153 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
84091 GTTGACTTAG
84101 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
* * *
84127 GCATACGGAGTTTATTCCCAGTGTAA
1 GCATACGGAGTTCATTCACAGTCTAA
84153 G
1 G
84154 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:85035 original size:26 final size:26
Alignment explanation
Indices: 84999--85051 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
84989 GTTGACTTAG
84999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
85025 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
85051 G
1 G
85052 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:85120 original size:899 final size:892
Alignment explanation
Indices: 83159--90185 Score: 8744
Period size: 899 Copynumber: 7.9 Consensus size: 892
83149 AAGGGAACCC
* * * * * *
83159 GGCCGGCTAAGCGCCCGTACGCTCATTTCATGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGT
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
** * * *
83224 CTAAGCATATAGAGTTCATTCCCAGTGTAAGATCGGACCGAACCGAGTGTTACGGGTGCACATGC
66 CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGC
* * * *** * *
83289 TTGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCTGGGGCACCATTATCGGTGCATCACC
131 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCGCCGGAGCATC-CA
** * *
83354 GGAGAACCTGACCGGTGGCATTGGGGTTCCGATGATTGGGGGGGCGGGGGGGTGTG-TGCAGATG
195 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGGTGTGCT-CACATG
*
83418 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
258 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
*
83483 CTCTCACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
323 CTCACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
83548 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATT
387 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* *
83613 TTTTTGTGCAGCCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCCTTC
452 TTTTTGTG-TG-CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTC
* * * * *
83678 TGAAAAAAGTTTCAAAAAATCTCGAACTGTAAAAAGTTTTAAAAATCGTAAAAAATAGAAAACGA
514 TGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* *
83743 GTTGTCTTGCCATGAAACTTAACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
579 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
83808 AAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCCATCGATCCA
644 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
83873 CGGCTTGCGCATCCCGCCTCTCTAGCCGACTTAGTGTCCGCCCGCCCGCTCGTTTCGTCGGTCGG
709 CGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* ** ** * * *
83938 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACTAGATCGAGAGTTGCAGTAGTAGGAT
774 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-GAGGGTTGCGGTAGCAGGAT
* * * * *
84003 CGACAAG-ACATAGGGGGGACCCAACCGATCCCCAACTTGCGCATCCTACCCCTTT
838 CGAC-AGCACGTAGGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCT
* *
84058 GGCCGGCTAAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGT
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* ** *
84123 CTAAGCATACGGAGTTTATTCCCAGTGTAAGATCGGACCGGATAGAGGGTTGTGGGTGCACATGC
66 CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGC
* ** * ** * *
84188 TAGGCTCAAGTATGTGCTGGTGCTGCATTTTTTTTTTTGCCTGGGGCACCATCGCCGGAGCATTG
131 TGGGCTCGGGCATGTGCTGGTGC--CACATTTTTTTTCGCCTGGGGCACCATCGCCGGAGCA-TC
* * * * *
84253 CAGGAGAACCTAATCGACAGCATTGGGGTTCCGATGATTGGGGGGCGGGGGGGTGTGCTCAGATG
193 CAGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGGTGTGCTCACATG
* **
84318 ATGTGCGATGGGTGGTGGTACTTGGCCCTTATATTTCCCCCCTATCCCTCATCAAACCTCAAGAA
258 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
* * *
84383 CTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTGAAGTGTCT
323 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
84448 GAAATGGGGACACTTTTTTCAAATGGCCAAAAAATCCTATACACTTCGAGTTTTTAGCTGAATTT
388 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* *
84513 TTTTGTGTACACAAAGAAAAATACAAGGATCACGTCTACCTAGTTTGGGGCCAAAACTCCTTCTG
453 TTTTGTGTGC-CAAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* * * ** *
84578 AAAAAAATTTAAAAAAAATCTCGAATCGTAACAAGTTTCCCAAATCATGAAAAATAGAAAACGAG
516 -AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
84643 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAA
580 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
84708 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCAC
645 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
84773 AGCTTGCGCATCCCGCCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCGCTAGTTTTGTTGGTTGG
710 GGCTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
84837 CTTACGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATTAAGGTTGCGGTAGTAGGATC
774 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGAGGGTTGCGGTAGCAGGATC
* * * *
84902 GACAGCATGTAGGGGGGACTCGACCGATCCCCGACTTGTGCATCTTGCCCCTCT
839 GACAGCACGTAGGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCT
* * * * *
84956 GGTCGGCTGAGCACCCGCACACTCATTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * *
85021 CTAAGCATATGGAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTACAGGAGCACATGC
66 CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGC
* * * * * * **
85086 TGGGCTCGGGCATGTGCTAGTACTACATTTTTTTTTCGCCCGGGGCTCTAT-AACGGAGCATCAC
131 TGGGCTCGGGCATGTGCTGGTGCCACA-TTTTTTTTCGCCTGGGGCACCATCGCCGGAGCATC-C
* * * *
85150 CGAAGAACCTGACCGATGGCTTTGGGGTTCCGACGATTGGGGGG-GTGGGAAGGGTGTG-TGCAC
194 AGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCG-GGG--GGGTGTGCT-CAC
* * *
85213 ATGATGTGCGATGGATGCTGGTAGTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCAA
255 ATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAA
* *
85278 GAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTG
320 GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* ** *
85343 TCTAAAATGATGACAC-TTTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
385 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
* * *
85407 TTTTTTTGTTCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTT
450 TTTTTTTG-T-GTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* **
85472 CTGAAAAAATTTTAGAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACG
513 CTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
*
85537 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCCATA
578 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
* *
85602 AAAATGGCATTGGCATGCCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTATCGATCC
643 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * ** * * *
85667 ACGGCTTGCGCATCCCGCCTCTATGGCCGGCATAGTGCCCGCTGGCCTGCTCATTTCGTCAGTTG
708 ACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
85732 GCTTAGGCATACAGAGTTCTTTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGCAGCAGAA
773 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGTAGCAGGA
* * * * *
85797 TCGACAGCACATAGGGGGGACTCGACCGATCCTCGACTTGTGCATCCTGCCCCTTT
837 TCGACAGCACGTAGGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCT
** * * *
85853 GGCCAACTGAGCACCCACATGCTCGTTTCGTGGGTTGAC-T-----TA--G-G--------CA--
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
85899 -T-A-C---C-GAGTTCATTCCCAGTGTATGATCGGACTGGACCGAGGGTTGTGGGTGCACATGC
66 CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGC
85957 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCG-CTCGGGGCACCATCGCCGGAGCATCCC
131 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCT-GGGGCACCATCGCCGGAGCAT-CC
* * * *
86021 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGAGGGGGTGTGCGCACATG
194 AGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGGTGTGCTCACATG
* * * * *
86086 ATGAGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCGCTCATCAAACCTCGAGAA
258 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
* * *
86151 CTCACA-CCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTT
323 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
86215 GAAATGGGGGA-ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATT
388 GAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
86279 TTTTTGTGCATGCCAACAAAAACACAAGGATCACGTCTACCATGTTT-GGGCCACAAACTGCTTC
452 TTTTTGTG--TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTC
* * * * * *
86343 TGAAAAATTTTTAAAAAAATTTACGAATCGTAAAAAGTTTCAAAAATCATGACAAATAGAAAACA
514 TGAAAAAATTTTAAAAAAATCT-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
86408 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
578 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** * * * *
86473 AAAATGGCATTGGCACAGTAGAAATATGGAGATGTACCTAAACCCACGTACCACCCTATCGATCC
643 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * ** * * *
86538 ATC-GCTTTCG----CCGCCTCTCTGGCCGACGTAGTGGCCGCCTACACGCTCGTTCCGTCAGTT
708 A-CGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * * *
86598 GGCTTAGGCATAAGAAGTTCATTCCAAGTCTAAGATC-GAACTGGACCGAAGGTTGCAGTAGCAG
772 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA-TGAGGGTTGCGGTAGCAG
* * ** * * *
86662 GATTGATAGCACACAGGGGCGACCCGACCGAT-CCTGGCTTGCGCATCCTGCCCCTCT
835 GATCGACAGCACGTAGGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCT
** * * *
86719 GGCCGATTGAGCGCCCGCACGTTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCTAGT
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
*
86784 CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACTGAGGGTTGCGGGTGCACATGC
66 CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGC
* * * * * * * ** * *
86849 TGGGCTTGAGCATGTGCTGGTGCCATA-CTTTTTTC-ACTCGAGGTATGATCGTCAGAGCATCGT
131 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCT-GGGGCACCATCGCCGGAGCATC--
* * * *
86912 C-GAAGAACCTGACCGGCGGCATTAGGGTTCCGATGATTGGGGGG-GTGGGGGGTGTGCTCACAT
193 CAGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCG-GGGGGGTGTGCTCACAT
**
86975 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGA
257 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGA
* * *
87039 ATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTACCAGTAGCCATTAAAGTGTC
322 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
87104 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGATTTTTTAGCTGAATT
387 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * *
87169 TTTTTATGCATGCCAAAAAAATTACAAGGATCACGTCTACCAGGTTTGTGGCCAAAACCCCTTTT
452 TTTTTGTG--TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * *
87234 GAAAAAATTTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATTGAGAAAAATAGAAAACGAG
515 GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * * *
87299 TTGTCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGCATGAATTTAAAAGCCATAAA
580 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
87364 AATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCAC
645 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ** * * * * * *
87429 AGCTTGCGCATCCCGTATTTCTGGCTGGCGCAGTGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGC
710 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * ** * * * *
87494 TTTGGCATACAGAGTTCTTTCTCAGTCTAAGATTGGACCAGACTGAGGGTTGGGGCAGTAGGATC
775 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGTAGCAGGATC
* * * * * * *
87559 GCCAGCACGCAGGGGGGACCCGGCTGATCCCCGGCTTGCGTATCTTGCCCCTCT
839 GACAGCACGTAGGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCT
** * * *
87613 GGCCAACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGATCCTTCCCAGT
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
** * * *
87678 CTAAGCATATAGAGTTCATTCCTAGTGTAAGATCGGACCGGATCGAGGGTTGTGGGTGCACATGC
66 CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGC
* * * ** *
87743 TAGGCTCTGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCAGGGCACCATTGCCGGAGCATCACC
131 TGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCGCCGGAGCAT--CC
* * * * * *
87808 A-GAGAACCTGACCGGCGGCATTGGGGTTCTGACAATTGGGGGAC--GGGTGTGTG--CACGTGA
194 AGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGGTGTGCTCACATGA
* *
87868 TGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
259 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
* * *
87933 TCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTG
324 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * * ** *
87998 --A-----A-A--TTGTTCAAATGGTCAAAAAATCTTGTACATTTCGAGTTTTTAATTGAAATTT
389 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
88053 TTTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGG-CAAAACTCTTTCTGA
454 TTTGTG--TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
*
88116 AAAAATTTTAAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
517 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
88181 ATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
582 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
88246 TGGCATTGG--TGCGACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
647 TGGCATTGGCATG-G-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
88309 GGCTTGCACATCCCGCCTCTCTGACCGGCGTAATGCTCGCCCGCTCGCTCGTTTCATCGGTTGGC
710 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ***
88374 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATTGAGGGTTGCCACAGCAGGATC
775 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGTAGCAGGATC
* * * ** ** * * *
88439 GAAAACACGCAGGGGGGACTTGGTCGATCCCC-AGCTTGTGCATCCTACCCCTTT
839 GACAGCACGTAGGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCT
* * *
88493 GGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGCTAACTTAGGCATACGGAGTTCATTCCCAGT
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
** *
88558 CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCAAATCGGACCGAGGGTTGCGGGTGCACATGC
66 CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGC
* * *
88623 TGGGCTTGGGCATGTGCTGGTGCCACATTTTTTTTTCACCTAGGGCACCAT--------CA-CC-
131 TGGGCTCGGGCATGTGCTGGTGCCACA-TTTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCCA
* * * *
88678 GGAGAAACTGATCGACGACATTGGGGTTCCGACGATTGGGGGG-GCGGGGGGTGTGCGCACATGA
195 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCG-GGGGGGTGTGCTCACATGA
* **
88742 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATT-GCCCCTCTATCCCTCATCAAACCTTGAGAA
259 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-CTATCCCTCATCAAACCTCAAGAA
*
88806 CTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
323 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
88871 GAAATGGGGACACTTTTTTCTAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCCGAATTT
388 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
** * * *
88936 TTTATGCATGCCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACT-C--CTAA
453 TTT-TGTGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* *
88998 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTCTCGAAAATCGTGAAAAATAGAAAACGAGTC
517 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
89063 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAA
582 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
89128 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATTGAGCCACGG
647 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * * *
89193 CTTGCACATCCTACCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATTGGTTGGCTT
712 CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * *
89258 CGGCATACGGAGTTCATTCCCATTCTAAGATCAGACC----GAGGGTTGCGATAGCAGGATC-AG
777 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGAGGGTTGCGGTAGCAGGATCGA-
* * * * * * *
89318 CAACATGTAGGAGGGACCCGACCGATCCCCGGCTTGCCCATCTTACCCCTCT
841 CAGCACGTAGGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCT
* ** * * **
89370 GGCCAGCTGAAAGCCCACACGCTCGTTTCGTGGGTTGACTTAGGTATAAAGAGTTCATT-CCAGT
1 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * *
89434 CTAAGCATACGGAGTTCATTCCCAATGTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGC
66 CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGC
* * * ** * * *
89499 TGGGCTCGAGCATATGCTGGAGCCGTATTTTTTTTTCGCCTAGGGCACCATCGTCGGAGCATCAA
131 TGGGCTCGGGCATGTGCTGGTGCCACA-TTTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCCA
* ** * * * *
89564 CGGAGAACCTGATCGACGGTGTTGTGGTTCCTACGATTGGGGAGGTGGGGGGGGATGTGCGCACA
195 -GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGG-GG-CGGGGGGG-TGTGCTCACA
* * *
89629 TGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTTATCAAACCTCAAG
256 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
** *
89694 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTGGTAGTCATTAAAGTGT
321 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * * * *
89759 TTGAAAATGGGGACACTTTTTTCAAATAGTCACGAAATCCTATACACTTTGAGTTTTTAGCTAAA
386 CTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
*
89824 TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTT
450 TTTTTTTGTG--TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* *
89889 CTGAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAGAAATAGAAAACG
513 CTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * **
89954 AATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAATTTGACCATTGTATGAATTTACAAGCCAT
578 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCAT
*
90019 AAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
642 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * * * * * *
90084 CACGACTTGCGCATCCCGCCTCTCTAGCCGACATAGTGCCCGCTCGCTCGCTTGTTTCATTGGTT
707 CACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* *
90149 AGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATC
772 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
90186 GGACTGGACC
Statistics
Matches: 5300, Mismatches: 697, Indels: 265
0.85 0.11 0.04
Matches are distributed among these distances:
866 53 0.01
867 118 0.02
869 67 0.01
870 252 0.05
871 279 0.05
872 20 0.00
873 8 0.00
874 124 0.02
875 2 0.00
876 111 0.02
877 107 0.02
878 2 0.00
879 1 0.00
880 470 0.09
881 24 0.00
882 359 0.07
883 36 0.01
884 52 0.01
885 11 0.00
886 1 0.00
887 36 0.01
888 5 0.00
889 204 0.04
890 366 0.07
891 173 0.03
892 209 0.04
893 116 0.02
894 160 0.03
895 153 0.03
896 495 0.09
897 219 0.04
898 352 0.07
899 563 0.11
900 89 0.02
901 62 0.01
902 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
CTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGC
TGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCCAG
GAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGGTGTGCTCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
TGTGTGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGAGGGTTGCGGTAGCAGGATCGACAGCA
CGTAGGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCT
Found at i:86798 original size:26 final size:26
Alignment explanation
Indices: 86762--86814 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
86752 GCTGACTTAG
*
86762 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
86788 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
86814 G
1 G
86815 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:88572 original size:26 final size:26
Alignment explanation
Indices: 88536--88588 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
88526 GCTAACTTAG
88536 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
88562 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
88588 G
1 G
88589 ATCAAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:89242 original size:882 final size:881
Alignment explanation
Indices: 85896--90185 Score: 5210
Period size: 880 Copynumber: 4.8 Consensus size: 881
85886 GTTGACTTAG
* * * *
85896 GCATACCGAGTTCATTCCCAGTGTATGATCGGACTGGACCGAGGGTTGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
85961 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCTCGGGGCACCATCGCCGG-AGCATCCCCGGA
66 CTTGGGCATGTGCTGGTGCCACATTTTTTTT---T-----CACC-TAG--GGCACCATCACCGGA
*
86025 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGAGGGGGTGTGCGCACATGATGA
120 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCG-GGGGGTGTGCGCACATGATGT
* * *
86090 GCGGTGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCGCTCATCAAACCTCGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
86155 CA-CCCCTTAAAGAGCATTGGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAA
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
86219 TGGGGGA-ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTTTTT
314 T-GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
86283 TGTGCATGCCAACAAAAACACAAGGATCACGTCTACCATGTTT-GGGCCACAAACTGCTTCTGAA
378 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACT-C--CTGAA
* * * * * *
86347 AAATTTTTAAAAAAATTTACGAATCGTAAAAAGTTTCAAAAATCATGACAAATAGAAAACAAGTC
438 AAAATTTTAAAAAAATCT-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
86412 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
502 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * * *
86477 TGGCATTGGCACAGTAGAAATATGGAGATGTACCTAAACCCACGTACCACCCTATCGATCCATC-
567 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CG
* ** * * * *
86541 GCTT-----TCGCCGCCTCTCTGGCCGACGTAGTGGCCGCCTACACGCTCGTTCCGTCAGTTGGC
631 GCTTGCACATC-CCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGC
* ** * * *
86601 TTAGGCATA-AGAAGTTCATTCCAAGTCTAAGATC-GAACTGGACCGAAGGTTG-CAGTAGCAGG
695 TTAGGCATACAG-AGTTCATTCCCAGTCTAAGATCAG-AC-CAACTGAGGGTTGCCA-CAGCAGG
* * * * * * * * *
86663 ATTGATAGCACACAGGGGCGACCCGACCGAT-CCTGGCTTGCGCATCCTGCCCCTCTGGCCGATT
756 ATCGACAACACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCAACT
* *
86727 GAGCGCCCGCACGTTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
821 GAGCGCCCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
86788 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACTGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * ** ** * * ** *
86853 CTTGAGCATGTGCTGGTGCCATACTTTTTTCACTCGAGGTATGATCGTCAGAGCATCGTCGAAGA
66 CTTGGGCATGTGCTGGTGCCACA-TTTTTT-TTTC-ACCTA-G---GGC--ACCATCACCGGAGA
* * * *
86918 ACCTGACCGGCGGCATTAGGGTTCCGATGATTGGGGGGGTGGGGGGTGTGCTCACATGATGTGCG
122 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
* *
86983 ATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAATTCACAC
187 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
87047 CCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
252 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
87112 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGATTTTTTAGCTGAATTTTTTTATG
317 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
87177 CATGCCAAAAAAATTACAAGGATCACGTCTACCAGGTTTGTGGCCAAAACCCCTTTTGAAAAAAT
382 CATGCCAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC---TGAAAAAAT
* * * *
87242 TTTAAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATTGAGAAAAATAGAAAACGAGTTGTCTTG
443 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * *
87307 CCATGAAACTTCACATGAAGGCTTAAAGGACCATTGCATGAATTTAAAAGCCATAAAAATGGCAT
508 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
87372 TGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACAGCTTGCG
573 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
** * * * * * * * *
87437 CATCCCGTATTTCTGGCTGGCGCAGTGCCTGCCCGTCCGCTCGTTTCGTCGGTTGGCTTTGGCAT
638 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAT
* * ** *** * * *
87502 ACAGAGTTCTTTCTCAGTCTAAGATTGGACCAGACTGAGGGTTGGGGCAGTAGGATCGCCAGCAC
703 ACAGAGTTCATTCCCAGTCTAAGATCAGACCA-ACTGAGGGTTGCCACAGCAGGATCGACAACAC
* * * * *
87567 GCAGGGGGGACCCGGCTGATCCCCGGCTTGCGTATCTTGCCCCTCTGGCCAACTGAGCGCCCGCA
767 GCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCAACTGAGCGCCCGCA
* * * *
87632 CGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGATCCTTCCCAGTCTAA
832 CGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
87682 GCATATAGAGTTCATTCCTAGTGTAAGATCGGACCGGATCGAGGGTTGTGGGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
87747 CTCT-GGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCAGGGCACCATTGCCGGAGCATCACCAG
66 CT-TGGGCATGTGCTGGTGCCACATTTTTTTTTCACCTAGGG---CA----C----CATCACCGG
* * * * *
87810 AGAACCTGACCGGCGGCATTGGGGTTCTGACAATT-GGGGGAC---GGGTGTGTGCACGTGATGT
119 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGT
*
87871 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
87936 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTG--A
249 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * ** *
87999 -----A-A--TTGTTCAAATGGTCAAAAAATCTTGTACATTTCGAGTTTTTAATTGAAATTTTTT
314 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
88056 GTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGG-CAAAACTCTTTCTGAAAA
379 GTGCATG-CCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC---CTGAAAA
* *
88119 AATTTTAAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
440 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
88184 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
505 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
88249 CATTGG--TGCGACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
570 CATTGGCATG-G-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
88312 TTGCACATCCCGCCTCTCTGACCGGCGTAATGCTCGCCCGCTCGCTCGTTTCATCGGTTGGCTTA
633 TTGCACATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
* *
88377 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGAATTGAGGGTTGCCACAGCAGGATCGAA
698 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACC-AACTGAGGGTTGCCACAGCAGGATCGAC
** ** * * * **
88442 AACACGCAGGGGGGACTTGGTCGATCCCCAGCTTGTGCATCCTACCCCTTTGGCCGGCTGAGCGC
762 AACACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCAACTGAGCGC
* *
88507 CTGCACGCTCGTTTCGTGGGCTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
827 CCGCACGCTCGTTTCGTGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
88562 GCATACGGAGTTCATTCCCAGTGTAAGATCAAATCGGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* *
88627 CTTGGGCATGTGCTGGTGCCACATTTTTTTTTCACCTAGGGCACCATCACCGGAGAAACTGATCG
66 CTTGGGCATGTGCTGGTGCCACATTTTTTTTTCACCTAGGGCACCATCACCGGAGAACCTGACCG
* * *
88692 ACGACATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCAATGGGTGCT
131 GCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
88757 GGTACTTGGCCCTTATATT-GCCCCTCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
196 GGTACTTGGCCCTTATATTGGCCCC-CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
88821 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
260 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
88886 TTTTCTAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCCGAA-TTTTTTATGCATGCCAA
325 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
88950 CAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTAAAAAAATTTTAAAAAAAT
390 -AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGAAAAAATTTTAAAAAAAT
* *
89015 CTCGAACCGTAAAAAGTCTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
454 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
89080 CACATGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
519 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
* * * **
89145 AAATATGAAGATGTGCCTAAACCCACTTACCACCCTATTGAGCCACGGCTTGCACATCCTACCTC
584 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTC
* * * *
89210 TCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATTGGTTGGCTTCGGCATACGGAGTTCAT
649 TCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCAT
* * * * * *
89275 TCCCATTCTAAGATCAGA-C--C-GAGGGTTGCGATAGCAGGATC-AGCAACATGTAGGAGGGAC
714 TCCCAGTCTAAGATCAGACCAACTGAGGGTTGCCACAGCAGGATCGA-CAACACGCAGGGGGGAC
* * * ** *
89335 CCGACCGATCCCCGGCTTGCCCATCTTACCCCTCTGGCCAGCTGAAAGCCCACACGCTCGTTTCG
778 CCGACCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCG
* * **
89400 TGGGTTGACTTAGGTATAAAGAGTTCATT-CCAGTCTAA
843 TGGGCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
89438 GCATACGGAGTTCATTCCCAATGTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * ** *
89503 CTCGAGCATATGCTGGAGCCGTATTTTTTTTTCGCCTAGGGCACCATCGTCGGAGCATCAACGGA
66 CTTGGGCATGTGCTGGTGCCACATTTTTTTTTCACCTAGGGCACCA---T-----CA-C--CGGA
* * ** * * *
89568 GAACCTGATCGACGGTGTTGTGGTTCCTACGATTGGGGAGGTGGGGGGGGATGTGCGCACATGAT
120 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGG-GG-GCGGGGGG-TGTGCGCACATGAT
* * * *
89633 GTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTTATCAAACCTCAAGAACT
182 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
** * *
89698 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTGGTAGTCATTAAAGTGTTTGA
247 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-
* * * * *
89763 AAATGGGGACACTTTTTTCAAATAGTCACGAAATCCTATACACTTTGAGTTTTTAGCTAAATTTT
311 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
*
89828 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGA
376 TTTGTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAA--CTCCTGA
* * *
89893 AAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAGAAATAGAAAACGAATC
437 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* **
89958 GTCTTGCCATGAAACTTCACGTGAAGGCTTAATTTGACCATTGTATGAATTTACAAGCCATAAAA
502 GTCTTGCCATGAAACTTCACATGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAA
*
90023 ATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
566 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * * * *
90088 ACTTGCGCATCCCGCCTCTCTAGCCGACATAGTGCCCGCTCGCTCGCTTGTTTCATTGGTTAGCT
631 GCTTGCACATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCT
* *
90153 TAGGCATACGGAGTTCATTCCAAGTCTAAGATC
696 TAGGCATACAGAGTTCATTCCCAGTCTAAGATC
90186 GGACTGGACC
Statistics
Matches: 2938, Mismatches: 369, Indels: 178
0.84 0.11 0.05
Matches are distributed among these distances:
870 37 0.01
871 6 0.00
873 5 0.00
874 132 0.04
876 109 0.04
877 107 0.04
878 4 0.00
879 3 0.00
880 467 0.16
881 20 0.01
882 353 0.12
883 52 0.02
884 47 0.02
885 10 0.00
886 3 0.00
887 40 0.01
888 5 0.00
889 209 0.07
890 350 0.12
891 164 0.06
892 222 0.08
893 117 0.04
894 169 0.06
895 133 0.05
896 174 0.06
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
CTTGGGCATGTGCTGGTGCCACATTTTTTTTTCACCTAGGGCACCATCACCGGAGAACCTGACCG
GCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTGAAAAAATTTTAAAAAAATCT
CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTC
TGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTC
CCAGTCTAAGATCAGACCAACTGAGGGTTGCCACAGCAGGATCGACAACACGCAGGGGGGACCCG
ACCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTCGTGG
GCTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:96214 original size:26 final size:26
Alignment explanation
Indices: 96185--96237 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
96175 GGTTGATTAG
*
96185 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
96211 GCATACGGAGTTCATTCCTAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
96237 G
1 G
96238 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:99899 original size:26 final size:26
Alignment explanation
Indices: 99863--99915 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
99853 GTTGACATAG
99863 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
99889 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
99915 G
1 G
99916 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:100361 original size:884 final size:893
Alignment explanation
Indices: 98990--100773 Score: 2535
Period size: 884 Copynumber: 2.0 Consensus size: 893
98980 GTTGACTTAG
* * *
98990 GCATACGGAGTTCATTCCCAGTGTAAGATCGGATCAGACTGAGGGTTGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* *
99055 CTCAGGCATGTGCTGGTGCCAAATTTTTTTTGCCTGGGGCACCATCGTCAGAACATCGTCGGAGA
66 CTCAGGCATATGCTGGTGCCAAATTTTTTTTGCCCGGGG--CCATCG-CAG---ATCGTCGGAGA
* *
99120 ACCTGACCGACGGCATTGGGGTTTCGACGATTTGAGAGGGGCGGAGCGGGTGTGTGCACATGATG
125 ACCTGACCGACGGCATTGGGGTTCCGACGATTTGAGAGGGGCGGAGCGGGTGTGCGCACATGATG
*
99185 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCGAACCTCAAGAACTC
190 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAACTC
* **
99250 ACACCCCCTGAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAA
255 ACACCCCCTGAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCAAA
* *
99315 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAGTTCGAGTTTTTAGCTGAATGTTTT
320 ATGGGGACACTTTTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTT
* *
99380 TATGCATGCCAACAAAAATACATGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTTCAAA
385 TATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTTCAAA
** * * *
99445 AAATTTTTAAAAAATCCTAAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
450 AAATTTAAAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGT
*
99510 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTAAAAGCCATAAAAATG
515 CTTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTAAAAGCCATAAAAATG
* *
99575 GCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
580 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * * * * *
99640 TGTGCATCCCGCTTCTCTGGCCGGCT-TAGTGCCTGTCGGCCCGCTCATTTCGTCGGTTGGCTTA
645 TGCACATCCCGCTTCTCTGG-CGGATGTAGTGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTA
* * *
99704 GGCATACGAAGTTCATTCCCATTATAAGATCAGACCGGACTGACGGTTGTGGA-AGCAGGATC-A
709 GGCATACGAAGTTCATTCCCAGTATAAGATCAGACCGGACCGACGGTTG-CGACAGCAGGATCGA
* * *
99767 GCAGCACGCAGGGGGGACCCAACCGATGCCCGGCTTGTGCATCCTGCCCCTCTGGCC-GACTGAG
773 -CAGCACGCAGGGGGGACCCAACCGATCCCCGACTTGTCCATCCTGCCCCTCTGGCCTG-CTG-G
**
99831 T-GCCCGCACGCTCGTTTTGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
835 TCGCCCGCACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
* *
99889 GCATACGGAGTTTATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTGCGGGTGCACATGCTGG
**
99953 GCTC-GAGCATATGCTGGTGCCGTATTTTTTTTCGCCCGGGG-CA-C-C-G-TCGTCGGAGAACC
65 GCTCAG-GCATATGCTGGTGCCAAATTTTTTTT-GCCCGGGGCCATCGCAGATCGTCGGAGAACC
* * * *
100012 TGACCGGCGGCATTGGGGTTCCGATGA-TTG-G-GGGGCGG-GGGGGTGTGCGCACATGATGTGT
128 TGACCGACGGCATTGGGGTTCCGACGATTTGAGAGGGGCGGAGCGGGTGTGCGCACATGATGTGC
*** **
100073 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTTTACCTTGAGAACT-ACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAACTCACA
* * * *
100137 CCGCTTTAAAGAGTATTTGAA-ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCAAAAT
258 CCCCCTGAAAGAGCATTT-AAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCAAAAT
* * *
100201 GGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
322 GGGGACACTTTTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTA
* * * * *
100266 TGCATGCCAAAAAAAATACAAGGATCATGTCTGCCAGGTTTGGGGCCAAAACTCCTTTTGAAAAA
387 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTTCAAAAA
*
100331 ATTTAAAAAAAATCC-AGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACAAGTCGTC
452 ATTTAAAAAAAATCCTA-AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
* *
100395 TTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTACCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTAAAAGCCATAAAAATGG
100460 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
100525 GCACATCCCGCTTCTCTGGCTGATGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGATTGGCTTAGG
646 GCACATCCCGCTTCTCTGGCGGATGTAGTGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGG
* * * ** * *
100590 CATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGACAGTAGGATCGACAG
711 CATACGAAGTTCATTCCCAGTATAAGATCAGACCGGACCGACGGTTGCGACAGCAGGATCGACAG
* *
100655 CATGCAGGGGGGACCCGACCGATCCCCGACTTGTCCATCCTGCCCCTCTGGCCTGCTGGTCGCCC
776 CACGCAGGGGGGACCCAACCGATCCCCGACTTGTCCATCCTGCCCCTCTGGCCTGCTGGTCGCCC
* * * * * *
100720 GTACGCTTGTTTCATGGTTTGACTTAGGCATACGGAGTTTATTCCCAGTGTAA
841 GCACGCTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
100773 G
1 G
100774 ATCAGACCGG
Statistics
Matches: 791, Mismatches: 84, Indels: 35
0.87 0.09 0.04
Matches are distributed among these distances:
883 8 0.01
884 558 0.71
885 79 0.10
886 7 0.01
887 1 0.00
888 3 0.00
889 37 0.05
893 1 0.00
894 1 0.00
896 1 0.00
897 2 0.00
898 2 0.00
899 84 0.11
900 7 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCAGGCATATGCTGGTGCCAAATTTTTTTTGCCCGGGGCCATCGCAGATCGTCGGAGAACCTGA
CCGACGGCATTGGGGTTCCGACGATTTGAGAGGGGCGGAGCGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCAAGAACTCACACCC
CCTGAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCAAAATGGGG
ACACTTTTTTCAAATGATCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTTTATGCA
TGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTTCAAAAAATTT
AAAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTACC
ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTAAAAGCCATAAAAATGGCATTG
GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACA
TCCCGCTTCTCTGGCGGATGTAGTGCCCGCCCGCCCGCTCATTTCGTCGATTGGCTTAGGCATAC
GAAGTTCATTCCCAGTATAAGATCAGACCGGACCGACGGTTGCGACAGCAGGATCGACAGCACGC
AGGGGGGACCCAACCGATCCCCGACTTGTCCATCCTGCCCCTCTGGCCTGCTGGTCGCCCGCACG
CTCGTTTCATGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:100955 original size:14 final size:14
Alignment explanation
Indices: 100936--100977 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
100926 ATATTATACG
100936 AAATACAAAAAAAT
1 AAATACAAAAAAAT
*
100950 AAATACCAAAAAAT
1 AAATACAAAAAAAT
*
100964 -AATACAAACAAAT
1 AAATACAAAAAAAT
100977 A
1 A
100978 GTAAAAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.74, C:0.12, G:0.00, T:0.14
Consensus pattern (14 bp):
AAATACAAAAAAAT
Found at i:102402 original size:18 final size:17
Alignment explanation
Indices: 102374--102422 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 17
102364 CCTAAGTTTT
102374 TAAAACCCCTAAAAATC
1 TAAAACCCCTAAAAATC
*
102391 TAAAATCCCCTAAAATTC
1 TAAAA-CCCCTAAAAATC
102409 -AAAACCTCCTAAAA
1 TAAAACC-CCTAAAA
102423 TCCAAAGTCC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 2 0.07
17 16 0.55
18 11 0.38
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.20
Consensus pattern (17 bp):
TAAAACCCCTAAAAATC
Found at i:102423 original size:17 final size:16
Alignment explanation
Indices: 102375--102428 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
102365 CTAAGTTTTT
*
102375 AAAACCCCTAAAAATC
1 AAAACCCCTAAAATTC
102391 TAAAATCCCCTAAAATTC
1 -AAAA-CCCCTAAAATTC
*
102409 AAAACCTCCTAAAATCC
1 AAAACC-CCTAAAATTC
102426 AAA
1 AAA
102429 GTCCTAGAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
16 2 0.06
17 20 0.61
18 11 0.33
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.19
Consensus pattern (16 bp):
AAAACCCCTAAAATTC
Found at i:110424 original size:26 final size:26
Alignment explanation
Indices: 110388--110440 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
110378 CTGGTCTGAT
* *
110388 CTTACACTGGGAATGAACTTCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
110414 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
110440 C
1 C
110441 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:110697 original size:886 final size:881
Alignment explanation
Indices: 108777--110948 Score: 2913
Period size: 886 Copynumber: 2.5 Consensus size: 881
108767 CTGCTACTGT
* * * *
108777 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTT-CATATGGCTAAGCCAACCTACGAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA-TTCCGTATGCCTAAGCCAACCAACGAA
* * * * * *
108841 ACAAGCGGGCGGGTGGGCACTATGCCGGCCAGAGAGGTGGGATGCGCAAGCCTTGGATCGATAGG
65 ACGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGG
*
108906 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
130 GTGGTAGGTCGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
108971 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
195 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
*
109036 TTTCACAATTTTTGAAACTTTTTATGGTTTGAGATTTTTTTTAAAA--TTTTCAGAAGGAGTTTT
260 TTTCACAATTTTTGAAACTTTTTAAGGTTTGAGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTT
* * *
109099 GGCCCCAAACTTGGTAGACGTGATCCTAGTATTTTTTTTTTTTGGCATGCACAAAAAAATTTAGC
324 GGCCCCAAACTTGGTAGACATGATCCTTGTA----TTTTTTTTGGCATGCACAAAAAAATTCAGC
* *
109164 TAAAACCTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
385 TAAAAACTCGAAGTGTACAGGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
109229 AAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGTTGTGAGTTCTCGAGG
450 AAAGGCTACT-G-AGCAAACC--T-AAACCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGG
* ** *
109294 TTTGATGAGGGATAGGGGGCCAATATAAAGATCAAGTACCAGCACCCATTGCACATCATGTGCGC
510 TTTGATGAGGGATAGGGGGCCAATATAAAGACCAAGTACCAGCACCCATCACACATCATGTACGC
109359 ACACCCCCCGCCCCCTCAATCGCTGGAACCCCAATGCCGCCAATCAAGTTCTCCGACGATGGTGC
575 ACACCCCCCGCCCCCTCAATCGCTGGAACCCCAATGCCGCCAATCAAGTTCTCCGACGATGGTGC
** * *
109424 CCCAAGCAAAAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTT
640 CCCAAGCAAAAAAAAAATACGACACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTC
* * * *
109489 GGTCCGATCCGATCTTACACTGGGAATGAACTCTGTATGCTTAGACCGGTAATGAACTCTGTATG
705 AGTCCGATCCGATCTTACACTGGGAATGAACTCTGTATGCTTAAACCGGGAATGAACTCCGTATG
* *
109554 CCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCCGACTAGAGGGGCAAGATGCACAAGC
770 CCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGCCGACCAGAGGGGCAAGATGCACAAGC
* * *
109619 CAGGGATCAACCGGGTCCCCCCTATGTGCTATCGATACTACTACCAC
835 CAGGGATCAACCGAGTCCCCCCTACGTGCTAGCGATACTACTACCAC
* * * * *
109666 AACCCTCAGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCAACGAAA
* * *
109731 CGAGCGGGCGGGCGGGCACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
66 CGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGG
* *
109796 TGGTAGG-CGGGTTTAGTCACATCTTCATATTTCTGCCATGTCAATGCCATTTTTATGGCTTGTA
131 TGGTAGGTC-GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
* * * * *
109860 AATTCCTACAATGATCCCTTAAGCCTTCATGTGAATTTTCATGGCAAG-CAACTCATTTTCTATT
195 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
109924 TTTCACAATTTTTGAAACTTTTTAAGGTTCGAGATTTTTTTAAAATTTTTTCAGAAAGAGTTTTG
260 TTTCACAATTTTTGAAACTTTTTAAGGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* * *
109989 GCCCCACACTTGGCAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
325 GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
110054 ACTCGAAGTGTACAGGATTTTGGGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTGATGG
390 ACTCGAAGTGTACAGGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGG
*
110119 CTACT-AGC-AA-C-AAACCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTGGAGGTTTGATGAGG
455 CTACTGAGCAAACCTAAACCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGG
* *
110180 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACGCACACCCCCCG
520 GATAGGGGGCCAATATAAAGACCAAGTACCAGCACCCATCACACATCATGTACGCACACCCCCCG
* * ** *
110245 CCCCC-CAATCG-TCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGATGATGCTCCAGTGATGGT
585 CCCCCTCAATCGCT-GGAACCCCAATGCCGCCAATCAAGTTCTCC---GA-----C---GATGGT
*** * * * ***
110308 GCCCTGGGCGAAAAAAAAATACGACACTAGCACATGCCTGAA-CCCAGCATGTGCACCTGTAACC
638 GCCCCAAGCAAAAAAAAAATACGACACCAGCACATGCC-CAAGCCCAGCATGTGCACCCACAACC
* * * *
110372 CTCAGTCTGGTCTGATCTTACACTGGGAATGAACT-TCGTATGCTTAAACTGGGAATGAACTCCG
702 CTCAGTCCGATCCGATCTTACACTGGGAATGAACTCT-GTATGCTTAAACCGGGAATGAACTCCG
* * * * *
110436 TATGCCTAAGTCAATCCATGAAATGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCAGGATGCGC
766 TATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGCCGACCAGAGGGGCAAGATGCAC
* ** * * * *
110501 AAG-CTGGAGATCAGTCGAGTCCCCCCCTACGTGGT-GCAGATCCTGCTGCCAC
831 AAGCCAGG-GATCAACCGAGT-CCCCCCTACGTGCTAGC-GATACTACTACCAC
* *
110553 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAATCGACGAAA
1 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCAACGAAA
* *** * * * ** * *
110618 CGA-CCGATAGACGGGCACTACGCTGGCTAGAGAGGCAGGATGCATAAGCCATGGATCAATATGG
66 CGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGG
110682 TGGTAGGTCGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
131 TGGTAGGTCGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
110747 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
196 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
110812 TTCACGATTTTTAAAACTTTTTACA-GTTTGGGATTTTTTTAAAATTTTTTTAGAAGGATTTTTG
261 TTCACAATTTTTGAAACTTTTTA-AGGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
* *
110876 GCCCCAAACTTGGTATA-AGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAA
325 GCCCCAAACTTGGTAGACA-TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
110940 AACTCGAAG
389 AACTCGAAG
110949 ACCAAGGCCT
Statistics
Matches: 1125, Mismatches: 133, Indels: 52
0.86 0.10 0.04
Matches are distributed among these distances:
874 1 0.00
875 31 0.03
876 109 0.10
878 2 0.00
880 1 0.00
881 2 0.00
882 3 0.00
883 1 0.00
885 102 0.09
886 332 0.30
887 234 0.21
888 48 0.04
889 259 0.23
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (881 bp):
AACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCAACGAAA
CGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGG
TGGTAGGTCGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCACAATTTTTGAAACTTTTTAAGGTTTGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
CCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAGGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGC
TACTGAGCAAACCTAAACCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAAGACCAAGTACCAGCACCCATCACACATCATGTACGCACACCCCCCGC
CCCCTCAATCGCTGGAACCCCAATGCCGCCAATCAAGTTCTCCGACGATGGTGCCCCAAGCAAAA
AAAAAATACGACACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCAGTCCGATCCG
ATCTTACACTGGGAATGAACTCTGTATGCTTAAACCGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAATGAGCGTACGGGCACTCAGCCGACCAGAGGGGCAAGATGCACAAGCCAGGGATCAAC
CGAGTCCCCCCTACGTGCTAGCGATACTACTACCAC
Found at i:116287 original size:26 final size:26
Alignment explanation
Indices: 116258--116310 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
116248 CTGGTCCAAT
*
116258 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
116284 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
116310 C
1 C
116311 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:117840 original size:26 final size:26
Alignment explanation
Indices: 117811--117863 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
117801 CTGATCCGAT
117811 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
117837 CTTAGACTTGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
117863 C
1 C
117864 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:118329 original size:897 final size:887
Alignment explanation
Indices: 116574--118576 Score: 2793
Period size: 897 Copynumber: 2.2 Consensus size: 887
116564 TTAGGCACAT
* *
116574 CTAAAAACTCGAAGTGTACAGGA-TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
1 CTAAAAACTCGAAGTGTACAGGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
116638 TAATTGCTACTAGCAGCGAACCTGTAAAATCTCAAATGCTCTTTAGGAGGGTGTGAGTTCTTGTG
66 TAATGGCTACTGGCAGC-AAACTGTAAAATCTCAAATGCTCTTTAGG-GGGTGTGAGTTCTTGAG
* * * ** * * * *
116703 GTTTAATGATGGATAGGGGGCCAATATAAAGGCCAAGTACTGGCACCCATCGCATATCCTGTTCG
129 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGGTCG
* *
116768 CACACCCCCCGCCCCCTAATCGTCGGAACCCCAATGCCGTCGGCCAGGTTCTCTGGCGATGCTCC
194 CACACCCCCCGCCCCCTAATCGCCGAAACCCCAATGCCGTCGGCCAGGTTCTCTGGCGATGCTCC
* * * *
116833 GGCGATGGTGCCTCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACC
259 GGCGATGGTGCCCCGGGCGAAAAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGTGCACC
* * * *
116898 TACAACCCTCGGTTCAGTCCGATCTTACATTGAGAATGAACTTCGTATGCTTAGACTAGAAATGA
324 CACAACCCTCAGTTCAGTCCGATCTTACACTGAGAATGAACTCCGTATGCTTAGACTAGAAATGA
*
116963 ACCCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCACCAGCCAGAGGGGCAGGA
389 ACCCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCACTCACCAGCCAGAGGGGCAGGA
* **** * *
117028 TGCTCAAGTTGGGGATCGGTCGGGTCCCCCCTACATGCTGCTGATCTTGCTACCGCAACCCTCGT
454 TGCGCAACCCAGGGATCGATCGAGTCCCCCCTACATGCTGCTGATCTTGCTACCGCAACCCTCGT
* * *
117093 CTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACCGACAAAATGAGCGACCG
519 CCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACAGACAAAACGAGCGACCG
* * * * * * *
117158 GGTACTACGTCGGCCAAAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTAGGAGGTGGGTTT
584 GGCACAACGCCGGCCAAAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTAGGAGGTGGGTTT
117223 AGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGAT
649 AGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGAT
* * * *
117288 CCCTTAAGCCTTCACGTGAAGTTTGATGGCAAGATGATTCGTTTTCTATTTTTCACGATTTTCAA
714 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAA
* *
117353 AACTTTTTACGGTTTGAGATTTTTTTAAAATTTTTTCAAAAAGGGTTTTAACCCCAAACTTGGTA
779 AACTTTTTACGGTTTGAGATTTTTTAAAAATTTTTTCAAAAAGGGTTTTAACCCCAAACCTGGTA
117418 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
844 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
117462 CTAAAAACTCGAAGTGTACAGGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
1 CTAAAAACTCGAAGTGTACAGGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
117527 TAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTTGAG
66 TAATGGCTACTGGCAGCAAA-CTGTAAAATCTCAAATGCTCTTTA-GGGGGTGTGAGTTCTTGAG
* * * * * *
117592 GCTTGATGAGGGACAGGGGGCCAATATAAGGGCCAACTACCAGCACCCGTCTAACATTATGGTCG
129 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGGTCG
*
117657 CAC-CCGCCCCGCCCCCCTAATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCT
194 CACACC-CCCCG-CCCCCTAATCGCCGAAACCCCAATGCCGTCGGCCAGGTTCTCTGGCGATGCT
* * *
117721 CTGGCGATGGTGCCCCGGGCGAAAAAAAATACGACACCAGCACATG-TCTGAGCCTAGCTTGTGC
257 CCGGCGATGGTGCCCCGGGCGAAAAAAAATACGACACCAGCACATGCTC-GAGCCCAGCATGTGC
* * * *
117785 ACCCACAACCCTCAG-TCTGATCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTTGGA
321 ACCCACAACCCTCAGTTCAG-TCCGATCTTACACTGAGAATGAACTCCGTATGCTTAGACTAGAA
* * * *
117849 ATGAACTCTGTATGCCTAAGTCAACCCACGAACCGAGCGTGCGAGCGCTCAGCCAGCCAGAGGGG
385 ATGAACCCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCACTCA-CCAGCCAGAGGGG
* * *
117914 TAGGATGCGCAACCCAGGGATCGATCGAGTCCCCCCCTGCATGCTGCTGATCTTGCTACTGCAAC
449 CAGGATGCGCAACCCAGGGATCGATCGAGT-CCCCCCTACATGCTGCTGATCTTGCTACCGCAAC
* ** * *
117979 CCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGA
513 CC-TCGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACAGACAAAACGA
* * * *
118044 GCGGACGGGCGGGCACAATGCCGGCCAGAGAGACAGGATGTGCAAGCCATGGATGGATAGGGT-G
577 GC-GAC---CGGGCACAACGCCGGCCAAAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTAG
* * *
118108 GTAGGTGGGTTTAGGGACATCTTCATATTTCTGCCATGCCAATGCCATTTTTGTGGCTTGTAAAT
638 G-AGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
118173 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
702 TCATACAATGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
** * * **
118238 CACAATTTTTGAAACTTTTTTCGGTTCTG-GATTTTTTAAAAATTTTTTC-AGAAGGCGTTTTGG
767 CACAATTTTCAAAACTTTTTACGGTT-TGAGATTTTTTAAAAATTTTTTCAAAAAGG-GTTTTAA
*** *
118301 CCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTGTAAAAAAATTTAG
830 CCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * *
118359 TTAAAAACTCGAAGTGTACAGGATTTT-ACGACCATTTGAAAAAGGTTTCCCCATTTCAGACATT
1 CTAAAAACTCGAAGTGTACAGGATTTTGA-GACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* **
118423 TTAATGGCTACTGGCAGTAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
65 TTAATGGCTACTGGCAGCAAAC-TGTAAAATCTCAAATGCTCTTT-AGGGGGTGTGAGTTCTTGA
*
118488 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-ACACATCAT-GT
128 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGA-ACATCATGGT
*
118551 GCGCACACCCCTCCGCCCCCCAATCG
192 -CGCACACCCC-CCGCCCCCTAATCG
118577 TCGGGGCACC
Statistics
Matches: 983, Mismatches: 108, Indels: 39
0.87 0.10 0.03
Matches are distributed among these distances:
888 27 0.03
889 157 0.16
890 203 0.21
891 35 0.04
892 34 0.03
893 56 0.06
894 3 0.00
896 12 0.01
897 448 0.46
898 8 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
CTAAAAACTCGAAGTGTACAGGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACTGTAAAATCTCAAATGCTCTTTAGGGGGTGTGAGTTCTTGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGGTCGCA
CACCCCCCGCCCCCTAATCGCCGAAACCCCAATGCCGTCGGCCAGGTTCTCTGGCGATGCTCCGG
CGATGGTGCCCCGGGCGAAAAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGTGCACCCA
CAACCCTCAGTTCAGTCCGATCTTACACTGAGAATGAACTCCGTATGCTTAGACTAGAAATGAAC
CCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGAGCACTCACCAGCCAGAGGGGCAGGATG
CGCAACCCAGGGATCGATCGAGTCCCCCCTACATGCTGCTGATCTTGCTACCGCAACCCTCGTCC
GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGACAACAGACAAAACGAGCGACCGGG
CACAACGCCGGCCAAAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTAGGAGGTGGGTTTAG
GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAA
CTTTTTACGGTTTGAGATTTTTTAAAAATTTTTTCAAAAAGGGTTTTAACCCCAAACCTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
Found at i:119165 original size:27 final size:26
Alignment explanation
Indices: 119125--119183 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
119115 CTCCTTCTGC
* * *
119125 AAAAATTTTAAAAAAATCTTGAACAAT
1 AAAAAGTTT-AAAAAATCGTGAAAAAT
*
119152 AAAAAGTTTCAAAAATCGTGAAAAAT
1 AAAAAGTTTAAAAAATCGTGAAAAAT
119178 AGAAAA
1 A-AAAA
119184 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.61, C:0.07, G:0.08, T:0.24
Consensus pattern (26 bp):
AAAAAGTTTAAAAAATCGTGAAAAAT
Found at i:119582 original size:26 final size:26
Alignment explanation
Indices: 119546--119597 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
119536 TTGACTTAGA
*
119546 CATACGGAGTTCATTCCCAGTCTAAG
1 CATAAGGAGTTCATTCCCAGTCTAAG
*
119572 CATAAGGAGTTCATTCCCAGTGTAAG
1 CATAAGGAGTTCATTCCCAGTCTAAG
119598 ATCGCACTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (26 bp):
CATAAGGAGTTCATTCCCAGTCTAAG
Found at i:120473 original size:26 final size:26
Alignment explanation
Indices: 120442--120494 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
120432 GATGACTTAG
120442 GCATATGGAGTTCA-TTCCCAGTCTAA
1 GCATATGGAGTT-ATTTCCCAGTCTAA
*
120468 GCATATGGAGTTATTTCCCAGTGTAA
1 GCATATGGAGTTATTTCCCAGTCTAA
120494 G
1 G
120495 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTATTTCCCAGTCTAA
Found at i:120536 original size:896 final size:895
Alignment explanation
Indices: 118668--124795 Score: 8165
Period size: 898 Copynumber: 6.8 Consensus size: 895
118658 GTTGACCTAG
* * * *
118668 GCATACGGAGTTCATTCTCAGTGTAAGATCGGACCGGACTGAGGGTTACGGGTGCGGGTACACAT
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGG-T-----TGCGGGTGCACAT
* * * * *
118733 GCTGGGCTCGAGCATGTGCTGGTGCTGCATTGTTTTTCGCCTGGGGCACCATCACAGGAGCATCG
60 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCC-GGGGCACCATCGCCGGAGCATCG
* * * * *
118798 TCGGAGAACCTGACTGCCAGCATTGGGGTT-TCGGCGATTGGGGGGCTGGGGGGGTGTGCGCACA
124 CCGGAGAACCTGACCGACGGCATTGGGGTTCT-GACGATTGGGGGGC-GGGGGGGTGTGCGCACA
* * * *
118862 TCATGTGCGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCAACAAACCTCGAG
187 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
118927 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGT
252 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
118992 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTACGAGTTTTTAGCTGAAT
317 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT
* ** *
119057 TTTTGTGTGCATGTGAACAAAAATACAATGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
382 TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** ** *
119122 TGCAAAAATTTTAAAAAAATCTTGAACAATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
447 TGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGA
*
119187 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGTATTTACAAGCCATAA
512 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
119252 AAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
577 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * **
119317 CGGCTTGCGCATCTCACCTCTCTTGTCGGCGTAGTGCCCGCCCGCCTGCTCGTTTCGTCAATTGG
642 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * **
119382 CTTCGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGAGC-GAGGGTTGTGGCAGCAAGA
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGA-CTGAGGGTTGCAGCAGCAAGA
* * * * * * *
119446 TCAGCAGCA-CGTAGGGGGGACCCGGCCGATCCCTGGCTTGTGCATCCTGCCCCTCCGGCCGGTT
771 TCGGCAGCAGC-AAGGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
* * * *
119510 GAGCACCCGCACGCTCGTTTCGTGAGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAA
835 GAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * *
119571 GCATAAGGAGTTCATTCCCAGTGTAAGATCGCACTAGACCGACGGTTACGGGTGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
119636 CTCGGGCATGTGCTGGTGCGGCAGTTTTTTTTTGCTCGGGGCACCATCGCCGGCGCATCGCCTGA
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTTTTCGC-CGGGGCACCATCGCCGGAGCATCGCCGGA
* *
119701 GAACCTGACCGGCGGCATTGGGGTGTC-GACGTTTGGGGGGCGGGGGGGTGTGCGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGT-TCTGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGT
119765 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
119830 CACCCCCTTAAAGAGCATTTAAGATTTTACAAGTTTGCTGCCGGTAGCCATTAACGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
119895 T-GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGATTTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * **
119959 GCGCATACCAAAAAAAATACAATGATCATGTCTACCAAGTTTGTGGTGAAAACTCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
*
120024 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACCAGTCGTC
453 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
120089 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAATGG
518 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
120154 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
120219 GCGCATCCCGCCTCTTTGGCCGGCGTAGTGCCCGCCCGTCCGCTCGTTTCGGCGGTTGGCTTAGG
648 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * *
120284 CAAACGGAGTTCATTCCCAGTCTACGATTAGACCATACTGAGGGTTGTAGCAGCAGGATTGGCAG
713 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCAGCAGCAAGATCGGCAG
* *
120349 CATGCAAGGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGTGCC
778 CA-GCAAGGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * * * * *
120414 CATATGCCCATTTCGTGGGATGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
842 CACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
120468 GCATATGGAGTT-ATTTCCCAGTGTAAGATCGGACCGGACCAAGGGTTGCAGGTGCACATGCT-G
1 GCATATGGAGTTCA-TTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGG
* * * **
120531 GCTCGGGCATGAGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATTGCCAGAGCATCATCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCG-CCGGGGCACCATCGCCGGAGCATCGCCGGA
* * * *
120596 GAACCTGACCGACGGTATTGAGGTTCTGGCGATTGGGGGGGCGGGGGGGTGTGCGCACATGATTT
129 GAACCTGACCGACGGCATTGGGGTTCTGACGATT-GGGGGGCGGGGGGGTGTGCGCACATGATGT
*
120661 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
120726 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
120791 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * *
120856 ACGCATGCCAACAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCATAACTCCTTC-GAAAA
388 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAA
*
120920 AAATTTTAAAAAAAATCTCGAACCGTAAAAAGTTTTCGAAAAACATGAAAAATAGAAAACGAGTC
452 AAATTTT-AAAAAAATCTCGAACCGTAAAAAGTTTT-GAAAATCATGAAAAATAGAAAACGAGTC
*
120985 GTCTTGCCATGAATCTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
515 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
121050 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
580 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
121115 CTTACGCATCCCACCTTTTTGGTCGGCATAGTGCCCGCCCGCCCGTTCGTTTCGTCGGTTGGCGT
645 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* ** * * * *
121180 AGG-ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACAGTAGCAAAATCGA
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCAGCAGCAAGATCGG
* * * * * * * **
121244 CAGCA-CACAGAAGGGGACCCGATCGGTCCTCGACTTGCGCATCCTGCCCCTCCGACCGATTGAG
775 CAGCAGCA-AG-GGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * * * * * *
121308 TG-CTAGCACTCTCATTTCGTGGGTTGACCTAGGAATATGGAGTTCATTCCCAGTCTAA
838 CGCCCA-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
121366 GCATATGTAGTTCATTCCCAGTGTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTAGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
121431 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACTCGGGGCACCATCGTCGGAGCATCACCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGC-CGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
121496 AACCTGACCGACGGCATTGGCGTTCTGA-AATTTGGGGGGGCGGGGGGGTTGTCCTCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCTGACGA-TT-GGGGGGCGGGGGGG-TGTGCGCACATGATG
* * *
121560 TGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAATTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
121625 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
121690 ATTGGGACAC-TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
121754 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * * * *
121819 AAATTTT-AAAAAATTTCCTAATCGTAAAAAGTTTTGAAAATCGTGAGAAATAGAAAATGAGTCG
452 AAATTTTAAAAAAATCT-CGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCG
* **
121883 TCTTGCCATGAAACTTCACACGAAGGCTTAAGGGATGATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
121948 GGCATTGGCATGGCAGAAATATTAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGC
581 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * ** *
122013 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTACCCGCCCATCCGCTCGTTTCGTCGGTTGGCCTA
646 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * * * *
122078 GGCATACGGAGTTCATTCCTATTCTAAGATTGGACTGGACCGAGGGTTGCAACAACAAGATTGGC
711 GGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCAGCAGCAAGATCGGC
* * *
122143 AGCATGC-AGGGGGGTACCCGGTCGATCCCCGGCTTGCACATCCTGCCTCTCTGGCCAGCTGAGC
776 AGCA-GCAAGGGGGG-ACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* * * * *
122207 ACCCGCACGCTCGTTTGGTGGTTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
839 GCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * **
122264 GCATACCGAATTCATTCCCAGTTTAAGATCAGACCGGACCGAGAGTTATGGGTGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
122329 CTTGGGCATGTGCTGGTGCCGTATTTTTTTTCACCCGGTGCACCATCGCCGGAGCATCACTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTC-GCCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
122394 AACCTGACCGACAGCATTGGGGTTCCGACAATTGGGGGGCGGGGGGGGTGTACGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCTGACGATTGGGGGGC-GGGGGGGTGTGCGCACATGATGTG
**
122459 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCATTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
122524 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
122589 GGGGATACTTTTTTCAAATGGTCAAAAAATCCTGTATACTTCGAGTTTTTAGATGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
122654 TGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAACACCTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * *
122719 AGTTTAAAAAAAT-TCAAAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
454 ATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
122783 TTGCCATGAAACTTCACTTGAAGGCTTAAAGGATCATTGTATGAATTTAAAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
122848 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACGGCTT
583 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
122913 GCGCATCCCGCCTCTCTGGCTGGCATAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
648 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
122978 CATACGAAGTTCATTCCCAGTCTAAGATTGGACC-GAATCGAGGGTTGCAGTAGTAGGATCGACA
713 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACT-GAGGGTTGCAGCAGCAAGATCGGCA
* * * * *
123042 GCA-CACA--GGGG----GG--GA--CCCGACTTACGCATCTTACCCCTCTGGCCGACTGAGCGC
777 GCAGCA-AGGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * * *
123096 CCGCATGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
841 CCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *** * **
123151 GCATATGGAGTTCATTCCCAGTGTAAGATCGAACCAGACCGAGACCTGTGGGTGCACATGCTGCA
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
123216 CTCGGGCATGTGCTGGTGTCGCATTTTTTTTCACCTAGGGCACCCATCG-TGG-GCATCGCTCGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCC-GGGGCA-CCATCGCCGGAGCATCGC-CGG
* * * * * *
123279 AGAACCTGTGCCGGCGGCATTGGGGTGCGGACGATTGGGGGG-GCGGGGGTGTACGCACATGATG
128 AGAACCTG-ACCGACGGCATTGGGGTTCTGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATG
*
123343 TGTGGATGGGTG-TGGTACTTGGCCCCTTATA-TGG-CCCCTA-CCCTCATGCAAAACCTCGAGA
192 TG-CGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCAT-C-AAACCTCGAGA
* *
123404 ACCTCACACCCCC-TACAGAGCATTGGAGATTTTACAGG-TTGCTGCCAG-AGCCATT-AAG-GT
253 A-CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
123464 CTGAAATTGGGACACTTTTTTCAAAGTGGGTCACAAAATCCCGTACACTTCGAGTTTTTAGCTGA
317 CTGAAATGGGGACACTTTTTTCAAA-T-GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
* ** * * * * * *
123529 ATTTTTTTAG-GCATGCCAACAAAAATTCAACAATCACGTCTTCCAGGTTTGAGGCTAAAAATCC
380 ATTTTTTT-GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC
* **
123593 TTCTGAAAAAATTTTAAAAATATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
444 TTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAA
* * * *
123658 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTCAGGGACCATGGTATGAATTTGCAGGCCA
509 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * * *
123723 TAAAAATGGCATTGGCATGGAAGGAATATAAAGATTTGCCTAAACCCACCTACCACCCTATCGAT
574 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
123788 CCACGGCTTGCGCATCTCGCCTCTCTGGCCGACGTAAG-GCCCGCCCGTCCGTTCGATTCGTCGG
639 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT-AGTGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
123852 TTGGCTTAGGCATACGGAGTTCATTCCTTA-TCTAAGATTGGACCAGACTAAGGGTTG-TGACAG
703 TTGGCTTAGGCATACGGAGTTCATTCC-CAGTCTAAGATTGGACCAGACTGAGGGTTGCAG-CAG
* * * * * * * * *
123915 CAGGATCAGTAGCA-CGTAGGAGGGACCTGG-CGATCCCCGGCTTACGCATCTTGCCCCTCTGGT
766 CAAGATCGGCAGCAGC-AAGGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
* * ** * * *
123978 CGGCTGAACGCCCACACACTCGTTTTATGGGTTGACCTAGGCGTACAGAGTTCATTCCCAGTCTA
830 CGGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
124043 A
895 A
* *
124044 GCATATGGAGTTCATTCCGAGTGTAAGATCGAACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
* ** ** * *
124109 CTCAGGCATGTGCTGGTGCTACATTTTTTTTTCGCCCTGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAG
* *
124174 AACCTGACCGACGGCATTGGGGTTCTGGCGATTGGGGGG-GCGGGGGGTGTGCGCAAATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCTGACGATTGGGGGGCG-GGGGGGTGTGCGCACATGATGTG
* * *
124238 CGATGGGTGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAATCATCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
124303 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
124368 GGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTAAATTTTTTTT
324 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
*
124433 GTGCATGCCAACAAAAATACAAGGATAATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* ** *
124498 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTC
453 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
124563 CTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
124628 CATTGGCATGGAAAAAATATAAAGATGTGCCTAAACCCACCTCCCACCCTATCGATCCACGGCTT
583 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * * *
124693 GCGCATCCCTTCTCTCTGGCTGGCGTAGTGCCTGCCTGCCCCCTCGTTTCATCGGTTGGCTTAGG
648 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * *
124758 CATATGGAGTTCATTCCTAGTCTAAGATCGAACCAGAC
713 CATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGAC
124796 CAAGGGTTAC
Statistics
Matches: 4601, Mismatches: 541, Indels: 173
0.87 0.10 0.03
Matches are distributed among these distances:
882 25 0.01
883 5 0.00
884 384 0.08
885 25 0.01
886 82 0.02
887 204 0.04
888 33 0.01
889 2 0.00
890 2 0.00
891 4 0.00
892 61 0.01
893 238 0.05
894 36 0.01
895 113 0.02
896 923 0.20
897 851 0.18
898 985 0.21
899 443 0.10
900 146 0.03
902 1 0.00
903 38 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATATGGAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCTGACGATTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCAGCAGCAAGATCGGCAGCAG
CAAGGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:121378 original size:26 final size:26
Alignment explanation
Indices: 121342--121392 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
121332 TGACCTAGGA
121342 ATATGGAGTTCATTCCCAGTCTAAGC
1 ATATGGAGTTCATTCCCAGTCTAAGC
* *
121368 ATATGTAGTTCATTCCCAGTGTAAG
1 ATATGGAGTTCATTCCCAGTCTAAG
121393 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (26 bp):
ATATGGAGTTCATTCCCAGTCTAAGC
Found at i:122277 original size:26 final size:26
Alignment explanation
Indices: 122238--122290 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
122228 TTTGACTTAG
* * *
122238 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACCGAATTCATTCCCAGTCTAA
*
122264 GCATACCGAATTCATTCCCAGTTTAA
1 GCATACCGAATTCATTCCCAGTCTAA
122290 G
1 G
122291 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACCGAATTCATTCCCAGTCTAA
Found at i:123154 original size:26 final size:26
Alignment explanation
Indices: 123125--123177 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
123115 GTTGACTTAG
123125 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
123151 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
123177 G
1 G
123178 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:128144 original size:26 final size:26
Alignment explanation
Indices: 128114--128166 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
128104 GTTGACTTAG
128114 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
128140 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
128166 G
1 G
128167 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:128611 original size:885 final size:881
Alignment explanation
Indices: 126356--129577 Score: 4449
Period size: 885 Copynumber: 3.6 Consensus size: 881
126346 GTTGACTTAG
* * *** ** *
126356 GCATACGAAGTTCATTCCTAGTGTAAGATCAGACCGGACCGAGGGTTGTAGGTGTGCATGCTAGG
1 GCATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
* *
126421 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCTCGGGGCACCATCGTCGGAGAACCTGACCGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCTCGAGGCACCATCGTCGGAGAACCTGACCGA
* * *
126486 CGGCTTTGGGGTTTCGACGATTGGTGGGGCGGGGTAGTGTGCGCACATGATGTACGATGGGTGCT
131 CGGCATTGGGGTTTCGACGATTGG-GGGGCGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCT
**
126551 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTTCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
126616 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
* * * *
126681 CTTCAAATGGTCACAAAATCCTGTAAACTTTGAGTTTTTAGCTGAATTGCTTTT-TGCATGCCAA
325 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAA
* * * *
126745 CAAAAATACAAGGATCACATCCACCAAGTTTGGGGCCAGAACTCCTTCTGAAAAAATTTTAAAAA
389 -AAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * *
126810 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAA
453 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
126875 CTTCACGTGAAGGCTTAAAGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
518 CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
126940 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
583 CAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-
* * * * * * *
127005 CTCTTT-GGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACGGAGT
647 C-CTTTCTGCTGACGTAGTGCCTGCCCGCTCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * ** * *
127069 TCATTCACAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGAT-TAGCAGCACGTAGGG
711 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGA-CAGCACGCA--G
* * * ** ** * *
127133 GGGGACCCGACCGTTCCTAGGCTTATGCATCCTGCCCCTCTAGTCGGCTGAGCGTCCGCACGCTC
773 GGGGACCAGGCCGATCCCCGGCTTGCGCATCCTG-CCCTCTAGCCGGCTGAGCGCCCGCACGCTC
* *
127198 GTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAATCTAA
837 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * * *
127243 GCATACAAAGTTCATTCCCAGT-TAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTCGA
1 GCATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
** * *
127307 CTCAAGCATGTGCTGGTGCTGCATTTCCTTTTT-GC-CTAGGGCACCATCGTCGGAGCATCACTG
66 CTCGGGCATGTGCTGGTGCCGCATTT--TTTTTCGCTCGA-GGCACCA---TC---G--T--C-G
* * * *
127370 GAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGAGGGGGCGGGGGGGTGTGCACACATGAT
117 GAGAACCTGACCGACGGCATTGGGGTTTCGACGATTG-GGGGGCGGGGTGGTGTGCGCACATGAT
* *
127435 GTGTGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
181 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
127500 CACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
246 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
127565 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
311 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
127630 TTGTGCATACCAGAAAAAATACAAAGATCACGTCTACCCAGCT-TGGGGCCAAAACTCCTTCTGA
376 TTGTGCATGCCA-AAAAAATACAAGGATCACGTCTACCAAG-TGTGGGGCCAAAACTCCTTCTGA
127694 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA-AAAGACGAGT
439 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA-ACGAGT
* *
127758 CGTCTTGCCATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAA
503 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
127823 ATGGCATTGGCATGGCATAAATATGAAGATGTGCCTAAACCCGCTTAGCACCCTATCGATCCACG
568 ATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
127888 GCTTGCGCATCCCGCCTTTCTAGCTGGCATAGTGCCTGCCCGCTCGCTCTTTTCGTCGGTTGGCT
633 GCTTGCGCATCCCGCCTTTCT-GCTGACGTAGTGCCTGCCCGCTCGCTCTTTTCGTCGGTTGGCT
* * ** *
127953 TAGGCATACGGAGTTCATTCCCAGACTAACATCAGACCAGACCGACAGTTGCGGTAGTAGGATCG
697 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCG
* *
128018 ACAGCACGCAGGGTGGACCTGGCCGATCCCCGGCTTGCGCATCTTGCCTCTCTAGCCGGCTGAGC
762 ACAGCACGCAGGG-GGACCAGGCCGATCCCCGGCTTGCGCATCCTGCC-CTCTAGCCGGCTGAGC
*
128083 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
825 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * * *
128140 GCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGATCGAGGGTTACGGATGCACATACGGGG
1 GCATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
* * * *
128205 CTCGGGCATGTGCTGCTGCAGCATTTTTTTTCACTCGAGGCACCATCGTCGGAGAACCT-ATTCG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCTCGAGGCACCATCGTCGGAGAACCTGA-CCG
** ** *
128269 ACGGCATTGGGGTTTCGGTGATTGGGGGAAGGGGTGTTGTGCGCACATGATGTGCGATGGGTGCT
130 ACGGCATTGGGGTTTCGACGATTGGGGGGCGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCT
*
128334 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * * * *
128399 GAGCATTTGAGATTTTACAGGTTTGCTGTCAGCAACCATTAAAGTGTCTGAATTGGGGACACGTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
*
128464 TTTCAAATGGTCACAAAATCCTGTACACGTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAT
325 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-
*
128529 AAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTGAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* * * *
128594 ATCTCGAACCATAAAAAGTTTCCAAAATCATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAAC
454 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * *
128659 TTCACATGAAGGATTAAGGGACAATTGTATGAACTTACAAGCCATAAAAATGGCATTGGCGTGGT
519 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
* * * *
128724 AGAAATATGAAGATGTGCCTAAACCTACCTACCACCTTATCGATCCACGGCTTGCGCATCTCGCC
584 AAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* * * * ** *
128789 TCTCTGGTCGACGTAGTGCTTGCCCGCTCGCT-TGTTTTGTCGGTTGGCTTACCCATACAGAGTT
649 TTTCTGCT-GACGTAGTGCCTGCCCGCTCGCTCT-TTTCGTCGGTTGGCTTAGGCATACGGAGTT
*** * * * *
128853 CATTCCCAGTCTAAGATCA-AGTTGGACTGAGGGTTACAGTAGCAGGATCGACAGCACACAGGGG
712 CATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGG
* * * *
128917 GTACCAAGCCGATCCCCGGCTTGCGCATCCTACCCTTCTGGCCGGCTGAGCGCCCACACGCTCGT
776 G-ACCAGGCCGATCCCCGGCTTGCGCATCCTGCCC-TCTAGCCGGCTGAGCGCCCGCACGCTCGT
* *
128982 CTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
839 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
* * * * *
129025 GCATACGGAGTTCATTCCCAGTGTAAGATTGAACCGGATCAAGGGTTACGGGTGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
* * ** *
129090 CTCGGGCATGTGCTGGTGCCGTA-TTTTTTTCGCCCGAGGCACCATCACCGGAGAACCTGACCGG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCTCGAGGCACCATCGTCGGAGAACCTGACCGA
* * * *
129154 CGGCATTGGGG-TTCTGACGATTGGGGGGTGGGG-GGTGTGTGCACATGATGTGCTATGGGTGTT
131 CGGCATTGGGGTTTC-GACGATTGGGGGGCGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCT
*
129217 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAA
195 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
129282 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTT
* *
129347 TTTCAAATGGTTACAAAATCCTGTACACTTCGAGTTTTTAG-TGAATTTTTTTATGCATGCCAAA
325 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* * * * *
129411 AAATATGCAAGGATCAGGTCTACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAATTTTTTAAAAA
390 AAA-ATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* * * * *
129476 ATCTTGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAGC
454 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
129541 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
519 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTA
129578 NNNNNNNNNN
Statistics
Matches: 2077, Mismatches: 219, Indels: 83
0.87 0.09 0.03
Matches are distributed among these distances:
881 4 0.00
882 168 0.08
883 190 0.09
884 67 0.03
885 726 0.35
886 91 0.04
887 30 0.01
888 5 0.00
889 1 0.00
890 2 0.00
891 1 0.00
893 1 0.00
894 2 0.00
895 1 0.00
896 14 0.01
897 129 0.06
898 641 0.31
899 4 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (881 bp):
GCATACGAAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCTCGAGGCACCATCGTCGGAGAACCTGACCGA
CGGCATTGGGGTTTCGACGATTGGGGGGCGGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAA
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTT
TCTGCTGACGTAGTGCCTGCCCGCTCGCTCTTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAGCACGCAGGGGGACCA
GGCCGATCCCCGGCTTGCGCATCCTGCCCTCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
GTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
Found at i:133989 original size:26 final size:26
Alignment explanation
Indices: 133960--134012 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
133950 TCAGTCCGAT
*
133960 CTTACATTGAAAATGAACTCTATATG
1 CTTACATTGAAAATGAACCCTATATG
* *
133986 CTTAGATTGGAAATGAACCCTATATG
1 CTTACATTGAAAATGAACCCTATATG
134012 C
1 C
134013 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (26 bp):
CTTACATTGAAAATGAACCCTATATG
Found at i:134143 original size:892 final size:891
Alignment explanation
Indices: 132121--135615 Score: 4558
Period size: 895 Copynumber: 3.9 Consensus size: 891
132111 TTCTCCGATG
*** ** *
132121 ATGCCCGAGCCCAACATGTGCACTTGCAACCCTCGGTCTGGTCTTATCTTACATTGGGAATGAAC
1 ATGCCCGAGCCCAACATGTGCACCCACAACCCTCGGTC-GGTCCGATCTTACACTGGGAATGAAC
* * * * *
132186 TCTGTGTGCTTAGACTGGGAATGAA-CTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
65 TCCGTATGCTTAGACTGGGAATGAACCCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTACGG
* * * ** **
132250 GCTTTCAGTCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCCCTGTGTGC
129 GC-CTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCAGGGATCAATCGGGTCCCCCCCTGCATGC
* * * *
132315 TACTGATCCTGCTGC-CATGACCTTCGGTCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATG
193 TACCGATCCTGCTGCGCA--ACCTTC-ATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * *
132379 CCTAAGCCAACCGACGAAAAGAGC-GGACGGGCGGGCACTATGCTAACCAGAGAGACGGGATACG
255 CCTAAGCCAACCGACGAAACGAGCAGG-CGAGCGGGCACTACGCCGACCAAAGAGACGGGATGCG
* * * *
132443 TAAGCCATGGATCAATAGGGTGGTAGGTGAGTTGAGGCACATCTTCATATTTCTGCCATGCCAAT
319 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
*
132508 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCG
384 GCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCATGTGAAGTTTCATGGC-
* * ** *
132573 AA-ACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATAGG-TCGAGATTTTTTTAAA
448 AAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA-CGGTTCGAGATTTTTTTAAA
** *
132636 ATTTTTTCAGAAGGAGTTTTGCCCCCACACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
512 ATTTTTTCAGAAGGAGTTTTAACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
132701 CACAAAAACAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTTACCATTTGAAAAAAGTGTC
577 CACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
132766 CCCATTTCAGAGAGTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGGTCTTTAAGGG
641 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * * *
132831 GGTGTGAATTCTTGAGGTTTTATGAGGGATAGGGAGCCAATATAAGGGGCCAAGTACCAGCACCC
706 GGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAA-GGGCCAAGTACCAGCACCC
**
132896 ATCGCACATCATGTGCGCACACCCCCCGCCCCTCCAATCGTCGGAACCTTAATGCCG-CTGGTCA
770 ATCGCACATCATGTGCGCACACCCCCCGCCCC-CCAATCGTCGGAACCCCAATGCCGTC-GGTCA
** * * ** * * *
132960 GGTTCT-TCGATGAAGCTCCCGCGACAGTGCCCCGAGCAAAAAAAAAAT-GCAACAGCAGCAC
833 GGTTCTCT-GGCGATGCTCCGGCGATGGTGCCCCGGGGAAAAAAAATATGGC-AC--CAGCAC
* * ** *
133021 ATGCCCGAGCCTAGCATGTGCACCCGTAACCCTCGATCCGGTCCGATCTTACACTGGGAATGAAC
1 ATGCCCGAGCCCAACATGTGCACCCACAACCCTCGGT-CGGTCCGATCTTACACTGGGAATGAAC
* * * *
133086 TCCGTATACTTAGACTGGGAATGAACTCC-GTGTGCCTAAGTCAACCCACGAAACGAGTGTGCGG
65 TCCGTATGCTTAGACTGGGAATGAAC-CCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGG
* * ** *** * **
133150 GCGCTCAGCCGACTAGAGGGGCAGGATGCACAAGTTGGGGATCGA-CTGGGTCCCCCCCTGTGTG
129 GC-CTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCAGGGATCAATC-GGGTCCCCCCCTGCATG
* * * *
133214 CTACCGATCCTGCTACCGCAACCTTCATTTGGTCCGATCTTAGATTGGGAATGAACTCGGTATGC
192 CTACCGATCCTGCT-GCGCAACCTTCATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
133279 CTAAGCCAACCGTCGAAACGAGCAGGCGGGCGGGCACTACGCCGGCCAAAAAGGCGGGATGCGCA
256 CTAAGCCAACCGACGAAACGAGCAGGCGAGCGGGCACTACGCCGACCAAAGAGACGGGATGCGCA
* * *
133344 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCCAACG-
321 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
*
133408 CATTTTTATGGCTTGT-AATTCATACAATGATCCCTTAAGCCTTCATGTGAAGTTTGATGGCAAG
386 CATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
*
133472 ATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTT
451 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTT
*
133537 TTTCAGAAGGGGTTTTAACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
516 TTTCAGAAGGAGTTTTAACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
133602 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA-TTTGTGACCATTTGAAAAAAGTGTCCCCAT
581 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * *
133666 TTCAGACACTTTAATTGCTACTAGCATCGAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGT
646 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * *
133731 GAGTTCTTGAGGTTTAATGATGGATAGGGGGCCAATATAAAGGCCAAGTACC-GACACCCATCGC
711 GAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGC
* * * *
133795 ATATCATGTTCGCACACCCCCCGCCCCCTAATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTC
775 ACATCATGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* *
133860 TGGCGATGCTCCGGAGATGGTGCCTCGGGTGAAAAAAAATATGGCACCAGCAC
840 TGGCGATGCTCCGGCGATGGTGCCCCGGG-GAAAAAAAATATGGCACCAGCAC
* * * * **
133913 ATGCCCGAGCCCAACATGTGCACCTACAACCCTCAGTTCAGTCCGATCTTACATTGAAAATGAAC
1 ATGCCCGAGCCCAACATGTGCACCCACAACCCTC-GGTCGGTCCGATCTTACACTGGGAATGAAC
** * * *
133978 TCTATATGCTTAGATTGGAAATGAACCCTATATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
65 TCCGTATGCTTAGACTGGGAATGAACCCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
* * * * *
134043 CACTCAGCCAGCCAGAGGGGCAGGATGC-TCAAGTCAAGGATCAATCGGGTCCCCCCTTACATGC
130 C-CTCAGCCGGCCAGAGGGGCAGGATGCGT-AAGCCAGGGATCAATCGGGTCCCCCCCTGCATGC
* *
134107 TACTGATCTTGCTGTCGCAA-CTCTCATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
193 TACCGATCCTGCTG-CGCAACCT-TCATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
134171 CTAAGCCAACCGAC-AAA--ATG-A-GCGATCGGGTACTACGTCGGCCAAAGAGGCGGGATGCAC
256 CTAAGCCAACCGACGAAACGA-GCAGGCGAGCGGGCACTACGCCGACCAAAGAGACGGGATGCGC
* * * *
134231 AAGTCGTGGATCGATAGGGTGGAAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATG
320 AAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATG
* *
134296 CCATTTTTATGGCTTGTAAATTCATACATTGATCCCTTAAGCCTTCATGTGAAGTTTGATGGCAA
385 CCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
*
134361 GACGATTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAATT
450 GACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAATT
*
134426 TTTTCAAAAAGG-GTTTTAACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
515 TTTTC-AGAAGGAGTTTTAACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
134490 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGAGATCATTTGAAAAAAATGTCCCC
579 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCC
134555 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
644 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * * *
134620 GTGAGTTCTCGAGGCTTGATGAGGGACAGGGGGCCAATATAAGGGCCAACTACCAGCACCCGTCT
709 GTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
134685 AACATTATG-GTCGCAC-CCCCCCGCCCCCCAATCGCCGAAACCCCAATGCCGTCGGTCAGGTTC
774 CACATCATGTG-CGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *
134748 TCCGGCGATGCTCTGGCGATGGTGCCCCGGACGAAAAAAAATACGGCACCAGCAC
838 TCTGGCGATGCTCCGGCGATGGTGCCCCGG-GGAAAAAAAATATGGCACCAGCAC
* * * * *
134803 ATGCCTGAGCCTAGCTTGTGCACCCACAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAAC
1 ATGCCCGAGCCCAACATGTGCACCCACAACCCTCGGT-CGGTCCGATCTTACACTGGGAATGAAC
* * * *
134868 TCCGTATGCTTAGACTTGGAATGAACTCTGTATGCCTAAGTCAACCCACGAACCGAGCGTGATGG
65 TCCGTATGCTTAGACTGGGAATGAACCCTGTATGCCTAAGTCAACCCACGAAACGAGCGT-ACGG
* * * *
134933 TG-CTCAGCCGGCCAGAGGGGTAGGATGCGTAACCCAGGGATCAATCGAGTCCCCCCCTGCATGT
129 -GCCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCAGGGATCAATCGGGTCCCCCCCTGCATGC
* ** *
134997 TGCCGATCCTGCTGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
193 TACCGATCCTGCTGC-GCAA-CCTTCATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * ** * * *
135062 CTAAGGCAACCAACGAAACGAGTGGGCGAGCGGGCACAATGCCGACCAGAGAGACGGGATGCGCA
256 CTAAGCCAACCGACGAAACGAGCAGGCGAGCGGGCACTACGCCGACCAAAGAGACGGGATGCGCA
* *
135127 AGCCATGGATAGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCTGCCATGCCAATGC
321 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGC
* *
135192 CATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
386 CATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
** *
135257 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCTG-GATTTTTTTAAAATT
451 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTC-GAGATTTTTTTAAAATT
** * * * * **
135321 TTTTCAGAAGGAGTTTTGGCCCTAAACCTGGTAGACATGATCCTTGTATTTTTGTTGACATGTGC
515 TTTTCAGAAGGAGTTTTAACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * * *
135386 AAAAAAATTCAGTTAAAAACTCGAAGTGTACATGATTTTATGACCATTTGAAAAAGGTTTCCCCA
580 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * *
135451 TTTTAGACATTTTAATGGCTACTGGCAGTAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
645 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
135516 TGAGTTCTCAAGGCTTGATGAGGGATAAGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
710 TGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
135581 ACATCATGTGCGCACACCCCTCCGCCCCCCAATCG
775 ACATCATGTGCGCACACCCC-CCGCCCCCCAATCG
135616 CCGGGGCACC
Statistics
Matches: 2281, Mismatches: 269, Indels: 93
0.86 0.10 0.04
Matches are distributed among these distances:
888 94 0.04
889 21 0.01
890 463 0.20
891 216 0.09
892 233 0.10
893 55 0.02
894 66 0.03
895 570 0.25
896 40 0.02
897 178 0.08
898 16 0.01
899 143 0.06
900 181 0.08
901 2 0.00
902 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (891 bp):
ATGCCCGAGCCCAACATGTGCACCCACAACCCTCGGTCGGTCCGATCTTACACTGGGAATGAACT
CCGTATGCTTAGACTGGGAATGAACCCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC
CTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCAGGGATCAATCGGGTCCCCCCCTGCATGCTAC
CGATCCTGCTGCGCAACCTTCATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCAGGCGAGCGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCA
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
GAAGGAGTTTTAACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGA
TGCTCCGGCGATGGTGCCCCGGGGAAAAAAAATATGGCACCAGCAC
Found at i:134879 original size:26 final size:26
Alignment explanation
Indices: 134850--134902 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
134840 CCGATCCGAT
134850 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
134876 CTTAGACTTGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
134902 C
1 C
134903 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:137503 original size:896 final size:896
Alignment explanation
Indices: 135714--141873 Score: 7372
Period size: 896 Copynumber: 6.9 Consensus size: 896
135704 TAGGCATACA
* * *
135714 GAGTTCATTCCCAGTGTAAGATCAGATCGGACTGAGGGTTACGGGTATGTGTACACATGCTGGGC
1 GAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTAC-GG---GTG--CACATGCTGGGC
* * * * * * * *
135779 TCGAGCATTTGCTGGTGCTGCATTGTTTTTT-GCTTGGGGCACCATCACAGGAGCATCGCCGAAG
60 TCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * * * * * *
135843 AACCTGACCGCCAGCATTGGGGTTTCGGCGATTGGGGGGCTGGGGGGTGTGCACACATCATGTGC
125 AACCTGACCGACGGCATTGGGGTTCCGACGTTTGGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* *
135908 GGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTGACA
190 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
135973 CCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAAT-
255 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
* * *
136037 GGAGACACTTTTATCAAATTGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTG
320 GG-GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * * *
136102 TTCATGTGAACAAAAATACAATGATCATGTGTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
384 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * ** * *
136167 ATTTTAAAAAAATCCCGAACTGTAAAAAGTTTTAAAAATCGTCAAAAATAGAAAACGAGTCGTCT
449 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
136232 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGTATTTACAAGCCATAAAAATGGC
514 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
136297 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
579 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*** * *
136362 CGCATCTTACCTCTCTTGTCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTCGGC
644 CGCATCCCGCCTCT-TTGGCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * ** * * *
136427 ATACGGAGTTCATTCTCAGTATAAGATCAGACCGGACCAAGGGTTGTGGTAGCAAGG-TCGACAG
708 ATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTAAGGGTTGCAGCAGC-AGGATTGGCAG
* * * * * **
136491 CACGTAGGGGGGACCCGACCGATCCCTGGCTTGCGCATCCTGCCCCTCCGGCCAGTTGAGTACCC
772 CACGCAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* * *
136556 GCACGCTCGTTTCGTGAGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAAGCATAAG
837 ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAG
* * *
136616 GAGTAT-ATTCCCAGTGTAAGATCGCACCGGACCGACGGTTACGGGTGCACATGCTGGGCACGGG
1 GAGT-TCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGG
* * * * *
136680 CATGTGCTAGTGCGGCATTTTTTTTTCGCTCGGGGCACCATCGTCGGCGCATCGCCTGAGAACCT
65 CATGTGCTGGTGCCGCATTTTTTTTTCGCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* **
136745 GACCGGCGGCATTGGGGTTTTGACGTTTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
130 GACCGACGGCATTGGGGTTCCGACGTTTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
136810 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * *
136875 TTAAAGAGCATCTGAGATTTTACAAGTTTGCTGTCGGTAGCCATTAACGTGTCTGAAAT-GGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAC
* * * *
136939 ACTTTTTTCAAATGGTCACAAAATCCTGTAAACTTCTAGTTTTTAGCTGAATTTTTTTATGCATA
325 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
137004 CCAACAAAAATACAAGCATCACGTCTACCAAGTTTGTGGCAAAAACTCCTTCTGAAAAAATTTTA
390 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* *
137069 AAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACCAGTCGTCTTGCCAT
455 AAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
137134 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATAGCATTGGC
520 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
137199 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
585 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
137264 CCGCCACTTTGGCAGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAAACGG
650 CCGCCTCTTTGGC-GGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * *
137329 AGTTCATTCCCAATCTAAGATTAGACCAAACTGAGGGTTGCAGCAGCAGGATTGGCAGCATGCAG
714 AGTTCATTCCCAGTCTAAGATTAGACCAGACTAAGGGTTGCAGCAGCAGGATTGGCAGCACGCAG
* * *
137394 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGTGCCCATATGCT
779 GGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCT
* * * *
137459 CATTTCGTGGGATGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATACG
844 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAG
* * * * * **
137512 GAGTT-ATTTCCCAGTGTAAGATCGGACCAGACCAAGGGTTGCAGGTACATGTGCTGGGCTCGGG
1 GAGTTCA-TTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGG
* * * * * *
137576 CATGTGCTGCTGCCGTA-TTTCTTTTCGCCCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCT
65 CATGTGCTGGTGCCGCATTTTTTTTTCGCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCT
* * *
137640 GACCGACGGCATTGGGGTTCCGGCGATTGGGGTGGCGGGGGGGGGTGTGCGCACATGATTTGCGA
130 GACCGACGGCATTGGGGTTCCGACGTTTGGGG-GGC--GGGGGGGTGTGCGCACATGATGTGCGA
*
137705 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
137770 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGG
*
137835 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
322 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
137900 ATACCAACAAAGATACAAGGATCACGTCTACCAAGTTTGGAGTCATAACTCCTTC-GAAAAAAAT
387 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAAT
*
137964 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCGAAAAACATGAAAAATAGAAAACGAGTCGTCTTG
451 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
138029 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
138094 TGGCATGGCAG-AATATG-AG-TGTGCCTAGA-CCACCTACCACCGCTATCGATCCACGGCTTAC
581 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC-CTATCGATCCACGGCTTGC
* * * * * *
138155 GCA-CCCG-TTCTTTGGCTGCATAGTG-CCGCCCGCCTGGTCGTTTCGTCGGTTGGCGTAGGCGA
645 GCATCCCGCCTCTTTGGCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC-A
* *
138217 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTACAGCAGCAGGATTGGCAGCA
709 TACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACTAAGGGTTGCAGCAGCAGGATTGGCAGCA
* * * ** * * ** *
138282 CACAGAGTGGGACCCGATCGATCCTTGGCTTGCGCATCCTGCCCCTCCGACCGATTGAGCG-CTA
774 CGCAG-GGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCA
*
138346 GCACTCTCGTTTCGTGGGTTGACTTAGG-ATATCGAGTTCATTCCCAGTCCTAAGCATAGAGAGT
838 -CACGCTCGTTTCGTGGGTTGACTTAGGCATA-CG-G---------AGT--T---C---------
*
138410 TATTCCCAGTCTAAGCATATG
877 -ATTCCCAGTCTAAGCATAAG
138431 GAGTTTCATTCCGCAGTGTAAGATCGGACCGGACCGGAGGGTTACGGGTGCACATGCTGGGCTCG
1 GAG-TTCATTCC-CAGTGTAAGATCGGACCGGACC-GAGGGTTACGGGTGCACATGCTGGGCTCG
* * *
138496 GGCATGTGCTGGTGCCGCA-TTCTTTTTCGCTCGGGGCAGCATCGCCGGAGCATCACCGGAGAAC
63 GGCATGTGCTGGTGCCGCATTTTTTTTTCGCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
* ** *
138560 CTGACCGACGGCATTGGCGTTCCGAAATTTGGGGGGCGGGGGGGTTGTGCTCACATGATGTGCGA
128 CTGACCGACGGCATTGGGGTTCCGACGTTTGGGGGGCGGGGGGG-TGTGCGCACATGATGTGCGA
* * *
138625 TGGGTACTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAATTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
138690 CCCTTAAAGAGCATTTGAGATTTTATAGCTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATTGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGG
* * *
138755 GACACTTTTTTCAAATGGTCACAAAATCCTATACACTTTGAGTTTTTAGCTGAATGTTTTTGTGC
322 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
138820 TTGCCAGCAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
387 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* * * * * * *
138885 TT-AAAAAATTTCCTAATCGTAAAAAGTTTTGAAAATCGTGAGAAATAGAAAATGAGTCGTCTTG
452 TTAAAAAAATCT-CGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* **
138949 CCATGAAACTTCACACGAAGGCTTAAGGGATGATTGTATGAATTTACAAGCCATAAAAATGGCAA
516 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-A
* * * *
139014 TT-GCATGGTATAAATATTAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
580 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
139078 GCATCTCG-CTCTTCTGGCCGACTGTAGTTACCCACCCGTCCAGCATTCATTTTCGTTCGGTTGG
645 GCATCCCGCCTCTT-TGG-CGGC-GTAG-TGCCCGCCCG-CCCGC--TC-GTTTCG-TCGGTTGG
* * * * * **
139142 CTTCGGCA-ACGGAGTTCATTCCTAGTCTATCA-ATTGGATCGGACCCGGAGGGTTGCAGCAGCA
701 CTTAGGCATACGGAGTTCATTCCCAGTCTA--AGATTAGACCAGA--CTAAGGGTTGCAGCAGCA
* * * **
139205 AGATTGGCAGCATGCA-GGGGTACCCGGTCGATCCCCCGGCTTGCGCATACCTG-CCCTCTGGCC
762 GGATTGGCAGCACGCAGGGGGGACCCGACCGAT-CCCCGGCTTGCGCAT-CCTGCCCCTCTGGCC
* * *
139268 GGCTGAGCACCCCCACGCTCGTTT--T-GG-TG-GTT-----T--GGA---C-TT---AG-----
825 GGCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
139309 GCATACG
890 GCATAAG
* * * * *
139316 GAGTTCAATCCCACGTGTACAGATCAGACTGGACCGAGAGTTATGGGTGCACATGC-GGGCTCGG
1 GAGTTCATTCCCA-GTGTA-AGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGG
* * * *
139380 GCAATGTGGCTGGTGCCGTA-TTTTTTTTCACATC-GTGCACCATCGTCGGAGCATCG-CGGAGA
64 GC-ATGT-GCTGGTGCCGCATTTTTTTTTCGC-TCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
139442 ATCCGTGACCGAGCAAGTATTAGGGTTCGCGACAATTGGGGGGGCGGGGGGGGGGGGTGTGCACA
126 A-CC-TGACCGA-C-GGCATTGGGGTTC-CGAC-GTTTGGGGGGC-----GGGGGGGTGTGCGCA
*
139507 CATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
180 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
139572 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGT
245 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
139637 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTATACTTCGAGTTTTTAGATGA
310 GTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
* * *
139702 ATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCT
375 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
*
139767 TCTGAAAAAAGTTTAAAAAAAT-TCAGAACCG-AAAAAGTTTCGAAAATCATGAAAAATAGAAAA
440 TCTGAAAAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAA
* * * *
139830 CGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGGCA
504 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
139895 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
569 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
139960 CCACGGCTTGTGCATCCTGCCTCTCTGGCCGGCATAGTGCTCGCCCGCCCGCTCGTTTCATCGGT
634 CCACGGCTTGCGCATCCCGCCTCTTTGG-CGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * * * ** * *
140025 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGGA-TCGGGGGTTGCAGTAGTA
698 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACT-AAGGGTTGCAGCAGCA
* * * *
140089 GGATCGACAGCACGTAAGGGGGGA--C--CCGA-------CTTACGCATCCTGCCCCTCTGGCCG
762 GGATTGGCAGCACG-CAGGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * * * *
140143 ACTGAGCGCCCGCACGTTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
826 GCTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
140208 CATATA-
891 CATA-AG
* * * ** * * ** *
140214 GAGTTCATTCCCAATGTAAGATCGGACCAGACCGAGGGCTGTGGCTGCGCATGCTATGCTTGGGC
1 GAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGC
* * * * * * * * *
140279 TTGTGCTAGTGTCGCATTTTGTTTTCACCCAGGGCACCATCACCGGAGCATCGCTGGAGAACCTG
66 ATGTGCTGGTGCCGCATTTTTTTTTCGCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* *
140344 ACCGACGGCATTGGGGTTCCAACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
131 ACCGACGGCATTGGGGTTCCGACG-TTTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGG
140409 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
140474 TTACAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAC
* * *
140539 ATTTTTTTCAAATGGTCACAAAATCCAGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
140604 CCAACAAAAATTCAAGAATCACGTCTTCCAGGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTA
390 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * * *
140669 AAAATATCTTGAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCAT
455 AAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * * *
140734 GAAACTTCACATGAAGGCTTCAGGGACCATGGTATGAATTTGCAGGCCATAAAAATGGCATTGGC
520 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
140799 ATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATC
585 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
140864 TCGCCTCTCTGGTCGACGTAAG-GCCCACCCGCCCGCTCGTTTCGTCGGTTGGCATAGTCATACG
650 CCGCCTCTTTGG-CGGCGT-AGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * **
140928 GAGTTCATTCCCAGTCTAAGATTGGACCAGACTAAGGGTTGCGGCAGCAGGATTAGTAGCACATA
713 GAGTTCATTCCCAGTCTAAGATTAGACCAGACTAAGGGTTGCAGCAGCAGGATTGGCAGCACGCA
* * ** * * * * * **
140993 GGGGGGACCTG-GCGATCCCCGGCTTATGCATCTTGCCCCTCTGGTCAGCTGAACGCCCGCACAT
778 GGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACACGC
* ** * * * * * *
141057 TCATTTTATGGGTTGACCTAGGCGTACAGAGGTAATT-CCAGTCTAAGCATACG
843 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAG
* * * * *
141110 GAGTTCATT-CGAGTGTAAGATCGGATCGAACCGAGTGTTGCGGGTGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGC
** *** * * *
141174 ATGTGCTGGTGCTACATTTTTTTTTCGC-CCTAGCACCATTGTCGGAGCATCGCCGAAGAACCTG
66 ATGTGCTGGTGCCGCATTTTTTTTTCGCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
* * * *
141238 ACCGGCGGCATTGGGGTTTCGACGATT-----------GGG-G-G-GCAAATGATGTGCGATGGG
131 ACCGACGGCATTGGGGTTCCGACGTTTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
141289 TGCTTGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAATCATCGAGAACTCACACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
141354 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATAAGGACA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACA
141419 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT-AAGTTTTTTTGTGCATG
326 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATG
* * **
141483 CCAAAAAAAATACAAGGATAATTTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
390 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * * *
141548 AAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
455 AAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
141613 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
520 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
141678 ATGGCA-AGAATATAAAGATGTGCCTAAACCTACCTCCCACCCTATCGATCCACGGCTTGCGCAT
585 ATGGCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* ** * * ** * *
141742 TCCTTCTCTCTGGCTAGCGTAGTGCCTC-CCTACCCGCTCGTTTCATCGGTTGGCTTAGGCATAT
649 CCCGCCTCTTTGGC-GGCGTAGTGCC-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
141806 GGAGTTCATTCCCAGTCTAAGA-TCGAACCAGACCAAGGGTTACAACAGCAGGATTGGTAGCACA
712 GGAGTTCATTCCCAGTCTAAGATTAG-ACCAGACTAAGGGTTGCAGCAGCAGGATTGGCAGCACG
141870 CAGG
776 CAGG
141874 TGTCACGAGC
Statistics
Matches: 4550, Mismatches: 561, Indels: 317
0.84 0.10 0.06
Matches are distributed among these distances:
873 4 0.00
874 37 0.01
876 1 0.00
877 2 0.00
878 10 0.00
879 537 0.12
880 2 0.00
881 1 0.00
882 6 0.00
883 12 0.00
884 67 0.01
885 64 0.01
886 43 0.01
887 314 0.07
888 276 0.06
889 7 0.00
890 21 0.00
891 7 0.00
892 51 0.01
893 257 0.06
894 396 0.09
895 187 0.04
896 724 0.16
897 288 0.06
898 173 0.04
899 256 0.06
901 2 0.00
902 35 0.01
903 1 0.00
904 4 0.00
906 1 0.00
909 1 0.00
912 1 0.00
919 36 0.01
920 375 0.08
921 35 0.01
922 110 0.02
923 29 0.01
924 19 0.00
925 4 0.00
926 2 0.00
927 3 0.00
928 1 0.00
929 8 0.00
930 5 0.00
931 2 0.00
932 23 0.01
933 26 0.01
934 51 0.01
935 33 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GAGTTCATTCCCAGTGTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTTTTTCGCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTG
ACCGACGGCATTGGGGTTCCGACGTTTGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACA
CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
AAAAATCTCGAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGCCTCTTTGGCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATTAGACCAGACTAAGGGTTGCAGCAGCAGGATTGGCAGCACGCAGGG
GGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAG
Found at i:137526 original size:26 final size:26
Alignment explanation
Indices: 137479--137531 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
137469 GATGACTTAG
*
137479 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
137505 GCATACGGAGTT-ATTTCCCAGTGTAA
1 GCATACGGAGTTCA-TTCCCAGTCTAA
137531 G
1 G
137532 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:138416 original size:26 final size:26
Alignment explanation
Indices: 138379--138452 Score: 89
Period size: 25 Copynumber: 2.8 Consensus size: 26
138369 TTAGGATATC
138379 GAGTTCATTCCCAGTCCTAAGCATAGA
1 GAGTTCATTCCCAGT-CTAAGCATAGA
138406 GAGTT-ATTCCCAGTCTAAGCATATG-
1 GAGTTCATTCCCAGTCTAAGCATA-GA
*
138431 GAGTTTCATTCCGCAGTGTAAG
1 GAG-TTCATTCC-CAGTCTAAG
138453 ATCGGACCGG
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
25 12 0.29
26 12 0.29
27 10 0.24
28 8 0.19
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
GAGTTCATTCCCAGTCTAAGCATAGA
Found at i:138434 original size:25 final size:27
Alignment explanation
Indices: 138374--138447 Score: 91
Period size: 27 Copynumber: 2.7 Consensus size: 27
138364 TTGACTTAGG
*
138374 ATATCGAGTTCATTCCCAGTCCTAAGC
1 ATATGGAGTTCATTCCCAGTCCTAAGC
138401 ATA-GAGAGTT-ATTCCCAGT-CTAAGC
1 ATATG-GAGTTCATTCCCAGTCCTAAGC
138426 ATATGGAGTTTCATTCCGCAGT
1 ATATGGAG-TTCATTCC-CAGT
138448 GTAAGATCGG
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
25 12 0.29
26 12 0.29
27 13 0.32
28 4 0.10
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (27 bp):
ATATGGAGTTCATTCCCAGTCCTAAGC
Found at i:140233 original size:26 final size:26
Alignment explanation
Indices: 140181--140233 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
140171 GTTGACTTAG
* *
140181 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATAGAGTTCATTCCCAATCTAA
*
140207 GCATATAGAGTTCATTCCCAATGTAA
1 GCATATAGAGTTCATTCCCAATCTAA
140233 G
1 G
140234 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATATAGAGTTCATTCCCAATCTAA
Found at i:144296 original size:26 final size:26
Alignment explanation
Indices: 144260--144312 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
144250 GTTGACTTAG
144260 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
144286 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
144312 G
1 G
144313 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:145190 original size:26 final size:26
Alignment explanation
Indices: 145160--145212 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
145150 GTTGACTTAG
145160 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
145186 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
145212 G
1 G
145213 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:146073 original size:26 final size:26
Alignment explanation
Indices: 146044--146096 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
146034 GTTGACTTAG
146044 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
146070 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
146096 G
1 G
146097 ATCGAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:146950 original size:26 final size:26
Alignment explanation
Indices: 146914--146966 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
146904 GTTGACTTAG
146914 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
146940 GCATACGGAGTTCATTCTCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
146966 G
1 G
146967 ATTAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:147835 original size:25 final size:26
Alignment explanation
Indices: 147801--147857 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
147791 CGTGGACTGA
147801 TTTAAGCATAC-GAGTTCATTCCCAG
1 TTTAAGCATACTGAGTTCATTCCCAG
147826 TTTAAGCATACTGAGTTCATTCCCAG
1 TTTAAGCATACTGAGTTCATTCCCAG
*
147852 TGTAAG
1 TTTAAG
147858 ATCGGACCGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
25 11 0.37
26 19 0.63
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (26 bp):
TTTAAGCATACTGAGTTCATTCCCAG
Found at i:148330 original size:900 final size:897
Alignment explanation
Indices: 143408--148811 Score: 7259
Period size: 901 Copynumber: 6.1 Consensus size: 897
143398 AGGCACACGA
* * * * ** ** *
143408 AGTTCATTCCTAGTGTAAGATCAGATCGGATCGAGGGTTGCAGGTGTGCATGCTCAGCTCGAGCA
1 AGTTCATTCCCAGTGTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCA
* * *
143473 TGTGCTGGTGCTGTA-TTTTTTTTCGCCCGGGGCACCA---TC---G----TCGGAGAACCAGAC
66 TGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCTCGGAGAACCTGAC
* * * *
143527 CGACGGCTTTGAGGTTCCGACGATTGGTGGGGC-GGGGCGGTGTGCGCACATGATGTGCGATGGG
131 CGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
143591 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
143656 TAAAGAGCATTTGAG-TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
* * *
143720 CTTTCTTCAAATGGTCACAAAATCCTGTACATTTTGAGTTTTTAGCTGAATTGTTTTT-TGCATG
326 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATG
* * * * *
143784 CCAACAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAGAACTCCTTCTGAAAAAATTTTA
390 CCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
*
143849 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
455 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
143914 TAAACTTCACATGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGC
520 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
*
143979 ATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
585 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
144044 CCGTCTCTTTGGCCGGCGTAGTGCCCGCCCGCCAGCTCGTTTCGTCGATTGGCTTAGGCATACGG
650 CCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG-CTGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* ** *
144109 AGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGATAGCAGGATCGGTAGCACGCAG
714 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA-
* * * * * *
144174 GGGGGGACCCGACCGTTCCCCGACTTATGCATCCTGCCCCTCTGGTCGGTTGAGCTCCCACATGC
778 GGGGGGACTCGACCGATCCCCGACTTACGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCACACGC
*
144239 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
843 TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * **
144294 AGTTCATTCCCAGTGTAAGATCGGATTGGACCGAGGGTTGTGGGTGCACATGCTCGGCTCAAGCA
1 AGTTCATTCCCAGTGTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCA
* * * *
144359 TGTGCTGGTGCAGCATTTCCTTTTT-GCCCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTG
66 TGTGCTGGTGCCGCATTT-TTTTTTCGCCCGGGGCACCATCGTCGGAGCATC-TCGGAGAACCTG
* *
144423 ACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGGGGGTGTGCACACATGATGTGCGAT
129 ACCGACGGCATTGGGGTTCCGACGATTGGGGGG-GCGGGGGGGGTGTGCGCACATGATGTGCGAT
* *
144488 GGGTGCTGGTACTTGGCTCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCC
193 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
*
144553 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
258 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
144618 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
323 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * *
144683 TGCCAAAAAAAATAAAAAGATCACATCTACCAAGCT-TGGGGCCAAAACTCCTTCTGAAAAAATT
388 TGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TGTGGGGCCAAAAATCCTTCTGAAAAAATT
144747 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
452 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* * *
144812 CATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATT
517 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
144877 GGCATGACATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
582 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
144942 ATCCCGTCTTTCTAGCCGGTGTAGTGCCTGCCCGCTCGCTCTTTTCGTTGGTTGGCTTAGGCATA
647 ATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCT-GCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * * *
145007 CGGAGTTCATTCCCAGTCTAACATCAGACCAGACCGACAGTTCTGGTAGTAGGATCGACAGCACG
711 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACG
* * * **
145072 CAGGGGGGA-TCTGGCCGATCCCC-AGCTTACGCATCCTGCCCCTCTAGCCGGCTGAGCGCCTGC
776 CAGGGGGGACTC-GACCGATCCCCGA-CTTACGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCAC
145135 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
839 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
145194 AGTTCATTCCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTGTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCA
* * * **
145259 TGTGCTGCTGCCGTATTTTTTTTTTGCCCGGGGCACCA---TC---G----TCGGAGAACCTGTT
66 TGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCTCGGAGAACCTGAC
* ** * * **
145314 CGACGGCATTGGGGTTCTGGTGAAT--AGGGG-GAAGGGGGTGTGCGCACATGATGTGCGATGGG
131 CGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGG
145376 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
145441 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGAGA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
*
145506 -TGTTTTTCAAATGGTCACAAAATCCTGTACACGTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
326 CT-TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
145570 CC-AATAAAATACAAGGATCACG-CGTACCAAGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTG
390 CCAAAAAAAATACAAGGATCACGTC-TACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAAATTTT
* * *
145633 AAAAAAATCTCGAACCATAAAAAGTTTCCAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCA
454 AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
145698 TGAAACTTCACATGAAGGATTAAGAGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
519 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
145763 CGTGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
584 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * *
145828 CCCGCCTCTTTGGCCGGCGTAGTGCCTGCCCGCCCGGTCGTTTTGTCGGTTGGCTTACGCATACG
649 CCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG-CTGCTCGTTTCGTCGGTTGGCTTAGGCATACG
** * ** *** * *
145893 GAGTTCATTCCCAGTCTAAGATTGGGCTGGACCGAGGGTTACAGTAGCAGGATCGGCAGCACGTA
713 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCA
* * * * * * *
145958 GGGGGGAC-CAGGCCGATCCCCGACTTGCGCATCTTGCCCTTCTGGCCGGTTGAGCGCCCACAGG
778 GGGGGGACTC-GACCGATCCCCGACTTACGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCACACG
* *
146022 CTCGTCTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGG
842 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
146078 AGTTCATTCCCAGTGTAAGATCGAATCAGATCGAGGTTTACGGGTGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTGTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCA
* * * *
146143 TGTGCTGGTGTCG--TATTTTTTTCGCTCGAGGCACCA---T-----CA-C-CGGAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCTCGGAGAACCTGAC
* * * *
146196 CGACGGCATTGGGGTTTCGACGATTGGGGGGG-TGGGGGGGTGTGTGCACATGATGTGCTATGGG
131 CGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
146260 TGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
146325 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG-CATTAAAGTGTTTAAAATGGGGACA
261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
*
146389 CTTTTTTCAAATAGTCACAAAATCCTGTACACTTCGAGTTTTTAG-TGAATTTTTTTGTGCATGC
326 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
146453 CAAAAAATATGCAAGGATCAGGTCTACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAAATTTTTA
391 CAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAAATTTTAA
* * * *
146518 AAAAATCTTGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT-
456 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
146582 AAAGCTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGC
521 AAA-CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
** * ** *
146647 ATGGTGGAAATATAAAGATGTGCCTAAACCCATTTACCACCCTATCGATCCACGGCTTGTGCATC
585 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
146712 CCGCCTCTCTGGTCGGC--AG-G--CG---G--G--CGTTTCGTCAGTTGGCTTAGGCATACGGA
650 CCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * *
146765 GTTCATTCCCAGTCTAAGACCAGACTAGACTGAGGGTTGTGGCAGCAAGATCAGCAGCACACAGG
715 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGG
* * * * *
146830 GGGGACCCGACCGATCCCCGACTTATGCATCCTGCCCCTCTGGTCGGTTGAGCTCCCACATGCTC
780 GGGGACTCGACCGATCCCCGACTTACGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCACACGCTC
*
146895 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
845 GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ** * * * *
146948 AGTTCATTCTCAGTGTAAGATTAGATCGGACTGAGGGTTACAGGTGCACATGCT-GGCTCGAGCA
1 AGTTCATTCCCAGTGTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCA
* * * * *
147012 TATGCTGGTGCTGCA--TTTTTTTCGCCCAGGGCACCATTGCCGGAGCATCATCGGAGAACCTGA
66 TGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATC-TCGGAGAACCTGA
* * * *
147075 CCGACGGCATTGGGGTTCCAACGATTGGAGGGAC--GGGGGGTGTGCGTACATGATGTGCGATGG
130 CCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGG
*
147138 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
195 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * * * *
147203 TTAAAGAGCATTTGAGATTTTACAGATTTGCTG-CTGTGGCCATCAAAGTGTCTGATATGGGGAC
260 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGAC
* * *
147267 ACTTTTTTCAATTGGTCCCAAAATCCTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATG
325 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
147332 CCAAAAAAAATACAAGGATCATGCCTGCAAAGTGTGGGGCCAAAAATCTTTCTAAAAAAATTTTA
390 CCAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
* *
147397 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCAT
455 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
147462 GAAACTTCACATGAAGGCTTAACGAACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
520 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * ***
147527 ATGGCAAAAATATGAAGATGTACCTAAACGCGCCTACCACCCTATCGATCCATAACTTGCGCATC
585 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
147592 CCGCCTCTCTAGCCAGCGTAGTGCCCGCCCGCTGATCGTTTCATCGGTTGGCTTAGGCATACGGA
650 CCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
** * * * **
147657 GTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTGGCAGTAGGATTGGCAGCACATAGG
715 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGG
*** * * * * * *
147722 GGGGACTCGGTTGATCCCC-AGCTTGCGTATCCTACCCCTTTGGTCGGCTGAGCACCCGCACGCT
780 GGGGACTCGACCGATCCCCGA-CTTACGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCACACGCT
* * ** * * * *
147786 TGTTTCGTGGACTGATTTAAGCATAC-GAGTTCATTCCCAGTTTAAGCATACTG
844 CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* ** *
147839 AGTTCATTCCCAGTGTAAGATCGGACCGGATTGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTGTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCA
* * *
147904 TGTGCTGGTGCCACATTTTTTTTTCGCCCGGGGCATCATCGTCGGAGCATCGTCGGAGAATCTGA
66 TGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATC-TCGGAGAACCTGA
** * * *
147969 TTGGCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGTGTGTGTGTGTGCACATGATGTGTGA
130 CCGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGG-G-G-GTGTGCGCACATGATGTGCGA
* *
148034 TGGGTGTTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
192 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
*
148099 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATGGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
*
148164 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGC
322 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
148229 ATGCCAAAAAAAATACAAGGATCACTTCTACCAAGT-TCGGGGCCAAAAATCCTTCTGAAAAAAT
387 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTGT-GGGGCCAAAAATCCTTCTGAAAAAAT
** *
148293 TTTAAAAAAATCTCGAACTTTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAAACGAGTCGTCTT
451 TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTT
148358 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
515 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * **
148423 TTGGCATGGCAGAAATATGAAGATGTGCCTAAATCGACCTACCACCCTATCGATCCATGGCTTAT
580 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
148488 GCATCCCGCCTCTCTGGCCAGCGAAGTGCCCGCCTG-TCGGTCGTTTCGTCGGTTGGCTTAGGCA
645 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCT-GCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * *
148552 TATGAAATTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGTGGCTGCAAGATCGGTAGCA
709 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCA
* * * * *
148617 CGTAGGGGGGACTCGACTGATCCCC-AGCTTGCGCATCCTGCCCCTCTGGTCGGCTGAGTGCCCG
774 CGCAGGGGGGACTCGACCGATCCCCGA-CTTACGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCA
* * * *
148681 CACGCTCATTTCATGGATTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGA
838 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * ** *
148741 AGTTCATTCCCAGTGTAAGATCAGA-CTAGACTGAGGGTTTCAAGTGCACATGCTGGGCTCAGGC
1 AGTTCATTCCCAGTGTAAGATCGGATC-GGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
148805 ATGTGCT
65 ATGTGCT
148812 AGTGTCACGA
Statistics
Matches: 3980, Mismatches: 456, Indels: 148
0.87 0.10 0.03
Matches are distributed among these distances:
869 37 0.01
870 227 0.06
871 1 0.00
872 1 0.00
875 1 0.00
877 2 0.00
878 6 0.00
879 183 0.05
880 300 0.08
881 5 0.00
882 76 0.02
883 308 0.08
884 649 0.16
885 220 0.06
886 69 0.02
887 17 0.00
888 6 0.00
889 32 0.01
890 3 0.00
891 72 0.02
892 172 0.04
893 1 0.00
894 71 0.02
896 3 0.00
897 3 0.00
898 41 0.01
899 124 0.03
900 485 0.12
901 780 0.20
902 85 0.02
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (897 bp):
AGTTCATTCCCAGTGTAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCTCGGAGAACCTGAC
CGACGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGGGTGTGCGCACATGATGTGCGATGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
CAAAAAAAATACAAGGATCACGTCTACCAAGTGTGGGGCCAAAAATCCTTCTGAAAAAATTTTAA
AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGGG
GGGACTCGACCGATCCCCGACTTACGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCACACGCTCG
TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
Found at i:148737 original size:26 final size:26
Alignment explanation
Indices: 148707--148759 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
148697 ATTGACTTAG
148707 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
148733 GCATACGAAGTTCATTCCCAGTGTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
148759 G
1 G
148760 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:151089 original size:26 final size:26
Alignment explanation
Indices: 151010--151077 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
151000 GTTGACTTAG
151010 GCATACAGAGTTCATTGCCGGTCTAA
1 GCATACAGAGTTCATTGCCGGTCTAA
*
151036 GCATACAGAGTTCATTGTCGGTCTAA
1 GCATACAGAGTTCATTGCCGGTCTAA
151062 GCATACAGAGTTCATT
1 GCATACAGAGTTCATT
151078 CCCAGTGTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTGCCGGTCTAA
Found at i:159078 original size:26 final size:26
Alignment explanation
Indices: 159040--159092 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
159030 GTTAACGTAG
159040 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
159066 GCATACGGGGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
159092 G
1 G
159093 ATCGAACCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:160225 original size:896 final size:894
Alignment explanation
Indices: 157554--167140 Score: 12487
Period size: 894 Copynumber: 10.8 Consensus size: 894
157544 ATGCCAGGCC
157554 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
1 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
157619 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
66 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * **
157684 ACAAGGATCATGTCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTG
131 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
* * *
157749 AATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTACCATGAAACTTCACA
196 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* *
157814 TGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
261 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * *
157879 ATGAAGATGTGCTTAAACCCACCTACCACCTTATCGATCCACGGCTTACGCATCCCGCCTCTCTG
326 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * * * * * *
157944 GCCGACGTAGTGCCTGCCCGCCTGCCCGTTTCATTGATTGGCTTAGGCATACAGAGTTCATTCCC
391 GCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * ** *
158009 AGTCTAAGAT-TGAACTGGACTGAGGGTTGTGGTAGCAGGATCAACAGCACACAGGGGGGACCCG
456 AGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCCG
* * * ** * * * * * * * *
158073 ATCGATCCCCAGTTTACGCATCCTACCCATCTGGCTGGTTGAGCGCACGCACGTTCATTTCGTGG
520 ACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
158138 GTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGAT
585 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGAT
* * * * *
158203 CAGATCGGACCAAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTT
650 CAGACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA--TTTT
* * *
158268 TTTTTG-CTCGGAGCACCATCACCGGAGCATCGCTGGAGAACCTGACCGGCGGCATTGGGGTTCC
713 TTTTTGCCT-GGGGCACCATCGCCGGAGCATCGC-GGAGAACCTGACCGACGGCATTGGGGTTCC
* *
158332 GGCGATTGGGGGGCGAGGGGGGTGTGCGCAC---A--T--GATGGGTGCTGGTTCTTGGCCCTTA
776 GACGATTGGGGGGC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
158390 TACTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCAT
839 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
158446 TTGAGATTTTACAGGTTTGCTGCCCA-TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
1 TTGAGATTTTACAGGTTTGCTG-CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
158510 ACTGGTCACAAAATCCTATACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
65 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * *
158575 TGCAAGGATGACGTCTACCAAGTTTGGGGCCAAAAATCCTTCT-AAAAATTTTTTTAAAAAATCC
130 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA-ATTTTAAAAAAATCC
* * * * *
158639 CGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATTATACTTCA
194 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
158704 CATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGGTAGAA
259 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
*
158769 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGCCTCTC
324 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
** * * *
158834 TGGCCGATGTAGTGCTCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAAGGAGTTCATTC
389 TGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * ** * * *
158899 CCAGTCGAAGAT-TGAACCAGACTGAGGGTTGCAGCAGCAGGATCGACAGCACGTAGGGGGGACC
454 CCAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACC
** * ** * * ** * ** *
158963 CGACTAATCCCCAGCTTACGCAT-TCTGCCCCTTTAGCCGATTGAGCACCCAAACGCTCGTTTTG
518 CGACCGATCCCCGGCTTGTGCATCT-TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * *
159027 TGGGTTAACGTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGGGTTCATTCCCAGTGTAA
582 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAA
* * * * * **
159092 GATC-GAACC-AAACTGAGGATTGCGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCAGCCC
647 GATCAG-ACCGGATC-GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * * *
159155 TTCTTTTCGCCCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTT
710 TTTTTTTTGCCTGGGGCACCATCGCCGGAGCATC-GCGGAGAACCTGACCGACGGCATTGGGGTT
* * * * * * * * *
159220 CCGGCGACTAGGGGCCGGGGGGTTTGTGCACATGATGTGCGAT-GGAGCTGCTCCTTGGCCCTTA
774 CCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
159284 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
839 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
159340 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
1 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
159405 ATGGTCACAAAATCCTGTACACTAT-GAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAA
66 ATGGTCACAAAATCCTGTACACT-TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
*
159469 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAAT-CC
130 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
* * *
159533 GAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAGCTTCAC
195 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * * * *
159598 GTGAAGGCTTAAAGAACCGTTGTATGAATTTAGAAGCCATAAAAATGGAATTGGCATGGCAGAAA
260 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
* * *
159663 TATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTTTCT
325 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
*
159728 GGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
390 GGCCGGCGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * * ** *
159793 TTCCCAATCTAAGATCAGACCAAACCGAGGGTTGTGGCAGCAGGATAGGCAGCACATAGGGGGAA
451 TTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGA
* * * *
159858 CTCGACCGATCCTCGGCTTGTGCATCTTGCCCTTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTC
516 CCCGACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * *
159923 GTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCACT-CTAGTGTA
581 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTA
* * *
159987 AGATCAGACTGGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCGGCATT
646 AGATCAGACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * ** * *
160052 TTTTTTTGCCTGGGGTACCAACGCCGGAGCATCGCGAGAGAACCTGATTGGCGTCATTGGGGTTC
711 TTTTTTTGCCTGGGGCACCATCGCCGGAGCATCGCG-GAGAACCTGACCGACGGCATTGGGGTTC
160117 CGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT-GCCCTTAT
775 CGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
160181 ATTGGCCCCATATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
840 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
160236 TTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCT-AAATGGGGATAATTTTTTCAA
1 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * ** * *
160300 ATGGTCACAAAATCATGTACACTTGGTCTTTTTAGCTGAATTTTTTTGTGGATGCCAACAAGAAT
66 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
160365 ACAAGGATCACGTCTGCCAAGTTTGGGGCCAAAACTCATTCTGAAAAAATTTTTAAAAAATCCCG
131 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
* * *
160430 AATCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCAG-CTTGCCATGAAACTTCAC
196 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC-GTCTTGCCATGAAACTTCAC
** *
160494 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAGTAGAAA
260 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
*
160559 TATGAAGATGTGCCTAAACCCACCTACCA-CCTATCAATCCACGGCTTGCGCATCCCGCCTCTCT
325 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * * * *
160623 GGCCGGCATAGTGCCCGCCCGTCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCT
390 GGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
160688 CAGTCTAAGATC-GAACTAGACCAAGGGTTGCGGCAGTAGGATCGGCAGCACGCAGGGGGGACTC
455 CAGTCTAAGATCAG-ACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCC
**** * * ** * * *
160752 GGTTAATCCTCAGCTTGTGCAT-TATGCTTCTCTGGCCGACTGAGCGCCCGCACACTCATTTCGT
519 GACCGATCCCCGGCTTGTGCATCT-TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
* * * *
160816 GGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAAGCATACGAAGTTCATTCTCAGTGTAAG
583 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAG
* * * * *
160881 ATCAGACCGAATCGAGGGTTACGGGTGCACATGCTAGGCTCGGGCATGCGCTGGTGCCGTATTTT
648 ATCAGACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * * *
160946 TTTTCAT-CC-GGGGCACCATCGTCTGAGCATCGTCAGAGAACTTGACCGGCGGCATTGGGGTTC
713 TTTT--TGCCTGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTC
* ** *
161009 TGGTGATT-----------GG-G-GCG----T-A-----GA-----G--GG-ACTTGGCACTTAT
775 CGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*
161043 GTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
840 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* ** *
161098 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATATGGATACTTTTTTCAA
1 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
161163 ATGG---CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAAT
66 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
161225 ACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCCA
131 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
* * *
161290 AACCGTAAAAAATTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACA
196 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
161355 TGAAGGCTTAAGGGACCATTG--TG---------G-C------ATGGC--T----T-----AAAT
261 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * * * * **** *
161391 TTGAAGATGTGCATAAACCAACCTACCACCTTATCAATTTGTGGCTTGCGCATCCCGCCTTTCTG
326 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * *
161456 GCCAGCGTAGTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
391 GCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * ** * ** * *
161521 AGTCTAAGATCAGACCAGATCGAGGGGTGCAGTAGTAGGATCGATAGCATGCAGGGGGGACCTGA
456 AGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCCGA
* * * * * * * *
161586 TCGATCCTCAGCTTGTGCAT-TCTGCCCCTCGGGTCGGCTGAGCGACCGCACGCTCATTTCATGG
521 CCGATCCCCGGCTTGTGCATCT-TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
161650 GTTAACTTAGGCATACGGAGTTCA-TCCCAGTCTAAGCATACGGAGTTCATTGCCAGTGTAAGAT
585 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGAT
** * * * * *
161714 TGGACCGAACCGAGGGTTGCAGGTTCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTT
650 CAGACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTT
* * *
161779 TTTCGCTTAGGGCACCATCGTCAGG-GCATCGCTGGAGAACCTGACCGACGGCATTGGGGTTCCG
715 TTT-GCCTGGGGCACCATCG-CCGGAGCATCGC-GGAGAACCTGACCGACGGCATTGGGGTTCCG
* *
161843 ACGATT-GGGGGTGGGGGGTGTGCGCACATGATGTGCGATGGGTGGTGGTACTTGGCCCTTATAT
777 ACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
161907 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
842 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
161960 TTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACATTTTTTTCAA
1 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
162025 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGGTGAATTTTTTTGTGCATGCCAACAAAAAT
66 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* *
162090 ACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTCCTGAAAAAATTTTAAAAAAATCCCG
131 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
* *
162155 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAATTTCACA
196 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
*
162220 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGCCATGGCAGAAAT
261 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * * * * *
162285 ATGAGGGTGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGCACATCCCGCCTCTCTA
326 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * * *
162350 GCCGGCGTAGTGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCTCATGCATGCAGAGTTCATTCCC
391 GCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * *
162415 AGTCTAAGATCGGACTAGACTGAGGGTTGTGGTAGCAAGATCAGCAGCACGCAGGAGGGACCCGG
456 AGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCCGA
* * * **
162480 TCGATCCTCGGCTTGTGCATAC-TGCCCCTCTGGCCGGCTGAGCTCCCGCACGCTCGTTTTATGG
521 CCGATCCCCGGCTTGTGCAT-CTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * * * * * * * *
162544 GTTAACTTAGGCATGCGAAGTTCATTACAAGTCTAAGCATATGAAGTTCATTCTCAGTGTAATAT
585 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGAT
* * * * *
162609 CGGATCGGATAGA-GGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTT
650 CAGACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTT
* * * * **
162673 TTCT-CCTGGGGCACCATCGTCGGAGCATCATCGCAAAACCTGACCGGTGGCA-TGGGGTTCCGA
715 TT-TGCCTGGGGCACCATCGCCGGAGCATC-GCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * * *
162736 CGATTGGGGGGTGGGGGTGGTGTGGGCACAAGATGTGCGATGGGCGGTGGTACTTGGCCCTTATA
778 CGATTGGGGGG-CGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
162801 TTGGCCCCCTATCCCTTATCAAACCTCTAGAACTCACACCCCCTTAAAGAGCAT
841 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
162855 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
1 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * ** * *
162920 ATGGTCGCGAAATCCTGTACCCTTTAAGTTTTTATCTGAATTTTTTT-TGCATGCCAAAAAAAAT
66 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * **
162984 ACAATGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTG
131 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
* * * *
163049 AACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAGAATGAGTCGTCTTGCCATGAAACTTCACA
196 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* * *
163114 TGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGTATTGGCATGGTAGAAAT
261 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * *
163179 ATGAAGATGTGCCTCAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATGCCACCTCTCTG
326 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * *
163244 GCCGGCGTAGTGCCCGCCTGCCCGCTCGTTTCGTCAGTTAGCTTAGGCATACAGAGTTCATTCCC
391 GCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * * *
163309 AGTCTAAGATTAGGTCAGACCGATGGTTGTGGTAGCAGGATCGGTAGCACGTAGGAGGGGACCCG
456 AGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGG-GGGGACCCG
* * *
163374 GCCGATCCCCGGCTTGGGCATCTTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGG
520 ACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
** * * * * * *
163439 GTTGACTTAGGCATGTGGAGTTCATTACAAGTCTAAGGATATGAAGTTCATTCTCAGTGTAAGAT
585 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGAT
* * * * *
163504 CAGATCGGATCGA-GGTTGTGGGTGCACATGCTGGGCTCGGGCACGTGTTGGTGTCGCATTTTTT
650 CAGACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTT
* * * **
163568 TCT--CTCGAGGCACCATCGCCGGAGCATCGTCGCAGAACCTGACCGGTGGCA-TGGGGTTCCGA
715 TTTGCCT-GGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * *
163630 CGATTAGGGGGCAGGGGGGTGTGGGCACAAGATGTACGATGGGTGCTGGTACTTGGCCCTTATAT
778 CGATTGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
163695 TGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
842 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
163748 TTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
1 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
163813 ATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAT
66 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
163878 AAAAGGATCATGTCTACCAAGTTTGGGGCCAAAATTCCTTCTG-AAAAATTTTTAAAAAATCCCG
131 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
** * * * *
163942 AACCGTAAAAAGTTTGGAAAATCGTGAAATATAGAGAACGAGTTGGCTTGCCATGAAACTTCACA
196 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* *
164007 TGAAGGCTTAAGGGACCATTGTATGTATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAAT
261 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * * *
164072 ATGAAGATGTGCCTTAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATGCCACCTCTCTG
326 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * *
164137 GTCGGCGTAGTGCCCGCCCGTCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
391 GCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* ** * * * *
164202 AGTCTAAGATCACACCAGAGTGAGGGTTGTAGCAGCAGGATCGGTAGCACGTAGGGGGGACCCGA
456 AGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCCGA
* * *
164267 CCGATCCCCGCCTTGCGCATCTTGCCCCT-TGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGG
521 CCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
164331 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTGTAAGATC
586 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
* * * * * *
164396 AGACCAGACCGATGGTTGCGGGTGCACATGCTGGGCTTGGGAATGTGCTGGTG--TCATATTTTT
651 AGACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT-TTTTT
* * * * *
164459 TTTGCCCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGTATTGCGGTTCCAAC
715 TTTGCCTGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
*
164524 GATTAGGGGGCCGGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
779 GATT-GGGGG--GCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
164589 ATTGGCCTCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGAGCAT
840 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
164644 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
1 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
164709 ATGGTCACAAAATCCTGTACATTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAAT
66 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * * ** *
164774 AGAAGGATCACATCTACCAAGTTTTGGGCAAAAACTCCATT-TGAAAATTTTTTTAAAAAATCCC
131 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAAATCCC
* * * * *
164838 AAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGAAACTTCAC
195 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
164903 ATGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAA
260 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
* * *
164968 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCATACGCATCCTGCCTCTCT
325 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * * * *
165033 AGCCGGCGTAGTG-TCGCCCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACAGAGTTCATTCC
390 GGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * ** * * * * * *
165097 CAGTCTAAGATCAGCCCAGATCGAGGGTTGTGACAACAGGATCGACAACACACAAGGGGAACCCG
455 CAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCCG
* * * * * * * * *
165162 ATCGATCCTCAGCTTCTGCATCCTGCCCCTTTGACCGGATGAGCGCCCGCACGCTCATTTCGTGG
520 ACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
*
165227 GTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGAT
585 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGAT
* * * * * *
165292 CAGATCGAATCAAGGGTTGTGGGTGCACATGCTTGGCTCGGGCATGTGCTAGTGCCGCATTTTTT
650 CAGACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTT
* * * *
165357 TTT--C----G---C-T---CGGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTTCGGC
715 TTTGCCTGGGGCACCATCGCCGGAGCATC-GCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* ** *
165409 GATTGGGGGGGCGACGGGGTGTGCATACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATAT
779 GATT-GGGGGGCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
165474 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
842 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* *
165527 TTGATATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
1 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * * *
165592 ATGGTCTCAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATG-CAAAAAAAAT
66 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * *
165656 ACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTCTAAAAAAATCTCG
131 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
* * *
165721 AATCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
196 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
165786 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
261 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
* * *
165851 ATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCAT-CAGTCTCTCTG
326 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
* * * * * *
165915 GCCGGCATAGTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTACGCATACAGAGTTCATTTCC
391 GCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * ** * *
165980 AATCTAAGATCGGACCAGACCGAGGGTTACGATAGCAAGATCGGCAGCACGCAGAGGGGGACCCG
456 AGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAG-GGGGGACCCG
* * * * *
166045 ACCAATCCCCGGCTTATGCATCTTGCCCCTTTGGCCGGCTGAGCGCTCACACGCTCGTTTCGTGG
520 ACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGG
* *
166110 GTTGACTTGGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGAT
585 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGAT
* * * *
166175 CGGACCGGA-CAGAGGGTTGCGGGTGGACATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
650 CAGACCGGATC-GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
166239 TTTTGCCCGGGGAACCATCACCGGAGCATCGTCGGAGAACCTGACCGACGGGATTGGGGTTCCGA
714 TTTTGCCTGGGGCACCATCGCCGGAGCATCG-CGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* *
166304 CGATTGGGGGGGCGGCGGGGTGTGCGAACATGATGTGCGATGGATGCTGGTACTTGGCCCTTATA
778 CGATT-GGGGGGCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
166369 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCAT
841 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
166423 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGATAGTTTTTTTCA
1 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-CTTTTTTCA
166488 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
65 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
166553 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTTAAACAAATCTC
130 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
* * ** *
166618 GAAACGTAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
195 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
166683 GTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGGCAGAAA
260 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
* *
166748 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCGCCTCTCT
325 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
* * *
166813 GGCCGGCGTAGTGCCCGCCCGCTCGCTTGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCC
390 GGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * ** ** *
166878 TAGTCTAAGATCAGATCAGACCGATAGTTGCAGTAGCAGGATCGGCAACACGCAGGGGGGGACCC
455 CAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCA-GGGGGGACCC
* * * * * * *
166943 GACCGATCCCCGACTTGGGCATCCTGCCCCTCTGGTCGGCTGAGCGCCCGTACGCTCATTTCCTG
519 GACCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
*
167008 GGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGA
584 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGA
* * * * *
167073 TCGGACCGGA-CTGATGGTTACGGTTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGAATTTT
649 TCAGACCGGATC-GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
167137 TTTT
713 TTTT
167141 CGCCCGAGGC
Statistics
Matches: 7628, Mismatches: 906, Indels: 315
0.86 0.10 0.04
Matches are distributed among these distances:
829 1 0.00
831 125 0.02
832 264 0.03
833 2 0.00
840 1 0.00
842 7 0.00
843 1 0.00
844 3 0.00
848 2 0.00
849 2 0.00
854 2 0.00
858 2 0.00
859 1 0.00
860 188 0.02
861 6 0.00
862 230 0.03
863 22 0.00
864 1 0.00
865 198 0.03
867 2 0.00
869 2 0.00
874 1 0.00
875 1 0.00
876 1 0.00
877 1 0.00
879 3 0.00
880 1 0.00
881 23 0.00
882 321 0.04
883 399 0.05
885 47 0.01
888 14 0.00
889 3 0.00
890 71 0.01
891 318 0.04
892 856 0.11
893 754 0.10
894 1012 0.13
895 612 0.08
896 969 0.13
897 609 0.08
898 254 0.03
899 295 0.04
900 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
GCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGGCAGCACGCAGGGGGGACCCGA
CCGATCCCCGGCTTGTGCATCTTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATC
AGACCGGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTT
TTGCCTGGGGCACCATCGCCGGAGCATCGCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA
TTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
Found at i:160865 original size:26 final size:26
Alignment explanation
Indices: 160828--160880 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
160818 GTTGACTTAG
*
160828 GCATACAGAGTTTATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
160854 GCATAC-GAAGTTCATTCTCAGTGTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
160880 G
1 G
160881 ATCAGACCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:164369 original size:26 final size:26
Alignment explanation
Indices: 164340--164392 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
164330 GTTGACTTAG
164340 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
164366 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
164392 G
1 G
164393 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:165276 original size:26 final size:26
Alignment explanation
Indices: 165240--165289 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
165230 GACTTAGGCG
165240 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
*
165266 TACGGAGTTCATTCCCAGTGTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
165290 ATCAGATCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:166156 original size:26 final size:26
Alignment explanation
Indices: 166120--166172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
166110 GTTGACTTGG
166120 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
166146 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
166172 G
1 G
166173 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:167048 original size:26 final size:26
Alignment explanation
Indices: 167019--167071 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
167009 GTTGACTTAG
167019 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
* *
167045 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTACCAGTCTAA
167071 G
1 G
167072 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:167316 original size:13 final size:14
Alignment explanation
Indices: 167283--167316 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
167273 ACGAAATATA
167283 AAAAAAATAAATAC
1 AAAAAAATAAATAC
*
167297 CAAAAAAT-AATAC
1 AAAAAAATAAATAC
167310 AAAAAAA
1 AAAAAAA
167317 AGCAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (14 bp):
AAAAAAATAAATAC
Found at i:167316 original size:14 final size:15
Alignment explanation
Indices: 167276--167317 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
167266 ATATTATACG
*
167276 AAATATAAAAAAAAT
1 AAATACAAAAAAAAT
*
167291 AAATAC-CAAAAAAT
1 AAATACAAAAAAAAT
167305 -AATACAAAAAAAA
1 AAATACAAAAAAAA
167318 GCAAAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 5 0.22
14 13 0.57
15 5 0.22
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (15 bp):
AAATACAAAAAAAAT
Found at i:168777 original size:16 final size:16
Alignment explanation
Indices: 168718--168778 Score: 61
Period size: 17 Copynumber: 3.7 Consensus size: 16
168708 TTTTAAAACC
168718 CCTAAAAATCCAAAAT
1 CCTAAAAATCCAAAAT
*
168734 CCCCT-AAAATTCAAAAT
1 --CCTAAAAATCCAAAAT
* *
168751 CTCTTAAAATCCAAAGT
1 C-CTAAAAATCCAAAAT
168768 CCTAAAAATCC
1 CCTAAAAATCC
168779 TAAAGACAAG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
15 1 0.03
16 11 0.30
17 22 0.59
18 3 0.08
ACGTcount: A:0.48, C:0.28, G:0.02, T:0.23
Consensus pattern (16 bp):
CCTAAAAATCCAAAAT
Found at i:174043 original size:9 final size:9
Alignment explanation
Indices: 174029--174053 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
174019 TTTCTTGAGA
174029 AAAAAAAAG
1 AAAAAAAAG
174038 AAAAAAAAG
1 AAAAAAAAG
174047 AAAAAAA
1 AAAAAAA
174054 TGAAGTTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:174947 original size:33 final size:33
Alignment explanation
Indices: 174900--175177 Score: 273
Period size: 33 Copynumber: 8.5 Consensus size: 33
174890 GTAATCTTTA
*
174900 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * * *
174933 TTTTAAGCCCAGTTTATTTGGCCATCAATGAAA
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* *
174966 ATTTAAGCCCAATTTATCTGGCC-TCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCAT-TAATGAAG
* * *
174999 ATTTAAGCCCAGCTTATCTGGCCATCAATG-AT
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
*
175031 ATTTAAGCCTAGTTTATCTGGCCATTAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * * * * *
175064 CTTTAAGCCCAGTTCATTTAGCCATCAATGAGG
1 ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
* * *
175097 TTTTAAACCTAGTTTATCTGG-C-TTCAAATGAAG
1 ATTTAAGCCCAGTTTATCTGGCCATT--AATGAAG
*
175130 ATTTAAGCCCAGTTTAGCTGGCC-TTCAAT-AA-
1 ATTTAAGCCCAGTTTATCTGGCCATT-AATGAAG
*
175161 ATTTAAGCCAAGTTTAT
1 ATTTAAGCCCAGTTTAT
175178 TTAGCCCTAA
Statistics
Matches: 199, Mismatches: 40, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
31 16 0.08
32 32 0.16
33 147 0.74
34 4 0.02
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (33 bp):
ATTTAAGCCCAGTTTATCTGGCCATTAATGAAG
Found at i:175005 original size:66 final size:65
Alignment explanation
Indices: 174899--175177 Score: 330
Period size: 66 Copynumber: 4.3 Consensus size: 65
174889 AGTAATCTTT
* * *
174899 AATTTAAGCCTAGTTTATCTGGCCATTAATGAAGTTTTAAGCCCAGTTTATTTGGCCATCAATGA
1 AATTTAAGCCTAGTTTATCTGGCCATAAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATG-
174964 A
65 A
* * *
174965 AATTTAAGCCCAATTTATCTGGCC-TCAAATGAAGATTTAAGCCCAGCTTATCTGGCCATCAATG
1 AATTTAAGCCTAGTTTATCTGGCCAT-AAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATG
175029 A
65 A
* * * * * *
175030 TATTTAAGCCTAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTCATTTAGCCATCAATGA
1 AATTTAAGCCTAGTTTATCTGGCCATAAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATGA
** * * * *
175095 GGTTTTAAACCTAGTTTATCTGG-CTTCAAATGAAGATTTAAGCCCAGTTTAGCTGGCCTTCAAT
1 -AATTTAAGCCTAGTTTATCTGGCCAT-AAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAAT
175159 -A
64 GA
*
175160 AATTTAAGCCAAGTTTAT
1 AATTTAAGCCTAGTTTAT
175178 TTAGCCCTAA
Statistics
Matches: 179, Mismatches: 30, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
64 14 0.08
65 59 0.33
66 106 0.59
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (65 bp):
AATTTAAGCCTAGTTTATCTGGCCATAAATGAAGATTTAAGCCCAGTTTATCTGGCCATCAATGA
Found at i:175134 original size:131 final size:130
Alignment explanation
Indices: 174899--175177 Score: 414
Period size: 131 Copynumber: 2.1 Consensus size: 130
174889 AGTAATCTTT
* * *
174899 AATTTAAGCCTAGTTTATCTGGCCATTAATGAAGTTTTAAGCCCAGTTTATTTGGCCATCAATGA
1 AATTTAAGCCTAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTCATTTAGCCATCAATGA
* *
174964 AAATTTAAGCCCAATTTATCTGGCCTCAAATGAAGATTTAAGCCCAGCTTATCTGGCCATCAATG
66 AAATTTAAACCCAATTTATCTGGCCTCAAATGAAGATTTAAGCCCAGCTTAGCTGGCCATCAAT-
175029 A
130 A
*
175030 TATTTAAGCCTAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTCATTTAGCCATCAATGA
1 AATTTAAGCCTAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTCATTTAGCCATCAATGA
*** * * * * *
175095 GGTTTTAAACCTAGTTTATCTGGCTTCAAATGAAGATTTAAGCCCAGTTTAGCTGGCCTTCAATA
66 AAATTTAAACCCAATTTATCTGGCCTCAAATGAAGATTTAAGCCCAGCTTAGCTGGCCATCAATA
*
175160 AATTTAAGCCAAGTTTAT
1 AATTTAAGCCTAGTTTAT
175178 TTAGCCCTAA
Statistics
Matches: 132, Mismatches: 16, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
130 17 0.13
131 115 0.87
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.34
Consensus pattern (130 bp):
AATTTAAGCCTAGTTTATCTGGCCATTAATGAAGCTTTAAGCCCAGTTCATTTAGCCATCAATGA
AAATTTAAACCCAATTTATCTGGCCTCAAATGAAGATTTAAGCCCAGCTTAGCTGGCCATCAATA
Found at i:175996 original size:23 final size:23
Alignment explanation
Indices: 175966--176032 Score: 100
Period size: 23 Copynumber: 3.0 Consensus size: 23
175956 ACCCGAGTCA
*
175966 ATTCTGTAAGACCTCCGGGCATG
1 ATTCTGTAAGACCTCCGAGCATG
*
175989 ATTCTGTAAGACCTTCGAGCATG
1 ATTCTGTAAGACCTCCGAGCATG
*
176012 ATT-TCTAAGACCTCCGAGCAT
1 ATTCTGTAAGACCTCCGAGCAT
176033 AATTTTGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
22 16 0.40
23 24 0.60
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (23 bp):
ATTCTGTAAGACCTCCGAGCATG
Found at i:176023 original size:22 final size:22
Alignment explanation
Indices: 175972--176037 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
175962 GTCAATTCTG
* *
175972 TAAGACCTCCGGGCATGATTCTG
1 TAAGACCTCCGAGCATGATT-TC
*
175995 TAAGACCTTCGAGCATGATTTC
1 TAAGACCTCCGAGCATGATTTC
*
176017 TAAGACCTCCGAGCATAATTT
1 TAAGACCTCCGAGCATGATTT
176038 TGATTCGCGG
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
22 20 0.53
23 18 0.47
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (22 bp):
TAAGACCTCCGAGCATGATTTC
Done.