Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 10 of 93
Found at i:1080817 original size:158 final size:156
Alignment explanation
Indices: 1080633--1081134 Score: 454
Period size: 158 Copynumber: 3.2 Consensus size: 156
1080623 CCCAATCTAA
* *
1080633 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGATCGAGGGTTACGGCAACAGGATCGACA
1 GCATACGGAGTTCATT-CCAGTCTAAGATTAGACCGGA-CGAGGGTTGCGGCAGCAGGATCGACA
* * * * * *
1080698 GCATGCAGGGGGGACCGGGCTGATCCCCGGCTTGCATATTCTGCCACTCCGATCGGCTGAGCACC
64 GCACGCAGGGGGGACCGGGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGATCAGCTGAGCGCC
*
1080763 CGCACGCCCGTTTCATGGGTTGACTTAG
129 CGCACGCTCGTTTCATGGGTTGACTTAG
* *** * * * * *
1080791 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CCAGACCGA-GGTTGTGGCAGCGGGACCGAT
1 GCATACGGAGTTCATTCCA-GTCTAAG-ATTAGACCGGA-CGAGGGTTGCGGCAGCAGGATCGAC
* * * * * * * * *
1080854 AGTACGTAGAAGGGGATCGGGTTGATCCCCAGCTTGCGCATTATGCCTCTTCGATCAGCTCAGCG
63 AGCACGCAG-GGGGGACCGGGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGATCAGCTGAGCG
* * *
1080919 CCCGTACGCTCGTTTCGTGGGTTGACTTAT
127 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* * ** *
1080949 GCATATGGAGTTCAATCCCAGTCTAAGATTAGACCGGACAGAGGGTTGCTACAGCAGGATTGACA
1 GCATACGGAGTTC-ATTCCAGTCTAAGATTAGACCGGAC-GAGGGTTGCGGCAGCAGGATCGACA
** * * * * ** *
1081014 GCACGCAGGGTGGGACCGAACCGATCCCCTGCTTTCACATTCTACCTCTCCGGCCAACTGAGCGC
64 GCACGCAGGG-GGGACCGGGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGATCAGCTGAGCGC
*
1081079 CCGCACGCTCATTTCGA-GGGTT-AGCTTAG
128 CCGCACGCTCGTTTC-ATGGGTTGA-CTTAG
*
1081108 GCATACGAAGTTCATTCCAAGTCTAAG
1 GCATACGGAGTTCATTCC-AGTCTAAG
1081135 CATACGGAGT
Statistics
Matches: 264, Mismatches: 69, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
157 27 0.10
158 129 0.49
159 108 0.41
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCAGTCTAAGATTAGACCGGACGAGGGTTGCGGCAGCAGGATCGACAGC
ACGCAGGGGGGACCGGGCTGATCCCCAGCTTGCACATTCTGCCTCTCCGATCAGCTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAG
Found at i:1081145 original size:26 final size:26
Alignment explanation
Indices: 1081108--1081160 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1081098 GTTAGCTTAG
1081108 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
* *
1081134 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCAAGTCTAA
1081160 G
1 G
1081161 ATTTTGAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCAAGTCTAA
Found at i:1081979 original size:340 final size:339
Alignment explanation
Indices: 1081310--1081982 Score: 1111
Period size: 340 Copynumber: 2.0 Consensus size: 339
1081300 GGGGCCAGGG
**
1081310 GGTGTGCGCACATGATGTGTGAAGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCA
1 GGTGTGCGCACATGATGTGACAAGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCA
* *
1081375 TCAAATCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
66 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
*
1081440 CCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAACGGTCACAAAATCTTCTCCACTTTGAGTT
131 CCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTT
* *
1081505 TTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACCTCTACCAAATTTGGGGAC
196 TTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATAACCTCTACCAAATTTGGGGAC
**
1081570 AAAACACTTTCTAAAAAAAGTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATAAAAAA
261 AAAACACTTTCTAAAAAAAGTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATAAAAAA
1081635 TAGAAAACCGAGGT
326 TAGAAAACCGAGGT
*
1081649 GGTGTGCGCACATGATGT-ACATTGGGTGCTGGTACTTGGCCCTTATATTGG-CCGCCTATCCCT
1 GGTGTGCGCACATGATGTGACA-AGGGTGCTGGTACTTGGCCCTTATATTGGACC-CCTATCCCT
1081712 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
64 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGT
*
1081777 AGCCATTAAAGTGT-TTAACATGGGGACACTTTTTTCAAACGGTCACAAAATCTTCTCCACTTCG
129 AGCCATTAAAGTGTCTGAA-ATGGGGACAC-TTTTTCAAACGGTCACAAAATCTTCTCCACTTCG
* *
1081841 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAAGGATAACCTCTACCAAATTTGG
192 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATAACCTCTACCAAATTTGG
* * * * *
1081906 GGACAAAA-ATCTTTCTAAAAAAATTTTAAAAAATCTCGAACCACAAAAAGTTTTAAAAATCGTG
257 GGACAAAACA-CTTTCTAAAAAAAGTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATA
1081970 AAAAATAGAAAAC
321 AAAAATAGAAAAC
1081983 GGGTCGTCTT
Statistics
Matches: 311, Mismatches: 18, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
338 6 0.02
339 143 0.46
340 162 0.52
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (339 bp):
GGTGTGCGCACATGATGTGACAAGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTT
TTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATAACCTCTACCAAATTTGGGGAC
AAAACACTTTCTAAAAAAAGTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATAAAAAA
TAGAAAACCGAGGT
Found at i:1082737 original size:26 final size:26
Alignment explanation
Indices: 1082687--1082737 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
1082677 TTGGCTTAGG
*
1082687 CATACCGAGTTCATTCCTCGTCTAAC
1 CATACCGAGTTCATTCCTCGCCTAAC
*
1082713 CATACGGAGTTCATTCC-CAGCCTAA
1 CATACCGAGTTCATTCCTC-GCCTAA
1082738 GATCTGATCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.25, C:0.33, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACCGAGTTCATTCCTCGCCTAAC
Found at i:1083084 original size:26 final size:25
Alignment explanation
Indices: 1083054--1083105 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
1083044 GTTGACTTAG
1083054 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAG-CTAA
*
1083080 GCATACGGAGTTCATTCCCAGCTAA
1 GCATACGGAGTTCATCCCCAGCTAA
1083105 G
1 G
1083106 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCCAGCTAA
Found at i:1083156 original size:354 final size:361
Alignment explanation
Indices: 1082650--1083304 Score: 842
Period size: 354 Copynumber: 1.8 Consensus size: 361
1082640 TTCGGTCGGT
* * *
1082650 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACCGAGTTCATTCCTCGTCTAACCA
1 TGAGCGCACGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCCCGTCTAACCA
* *
1082715 TACGGAGTTCATTCCCAGCCTAAGATCTGATCGGATCAAGGGTTGCGACAGCAGGACTAACAACA
66 TACGGAGTTCATTCCCAGCCTAAGATCAGATCAGATCAAGGGTTGCGACAGCAGGACT----ACA
* * * **
1082780 GGATCGACAACACGCAAGGGGGGACCAGG-TCGATCCCCAGCTTGCACATTCTGCCTCTTTGGCC
127 -GATC-ACAACAC-CAAGGGGGGACCGGGCT-GATCCCCAGCTTACACATTCTACCTCTCCGGCC
* * *
1082844 GGCTGAGCGCCCGTATGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCAAA
188 GACTGAGCGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCAAA
1082909 GACCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCGGGATCGACAGCATACAGAGAGGG
253 GACCCAGCCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCGGGATCGACAGCATACAGAGAGGG
1082974 ACTGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGCCCGAC
318 ACTGGGCTGATCCTCGGCTTGCGCATTATGCCTCTCCGCCCGAC
* * *
1083018 TGAGCGCACGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCCAGTCTAAGC
1 TGAGCGCACGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCCC-GTCTAACC
* * *
1083082 ATACGGAGTTCATTCCCAG-CTAAGATCAGATCAGATCGAGGGTTGCGATAGTAGGA-T-C-GAT
65 ATACGGAGTTCATTCCCAGCCTAAGATCAGATCAGATCAAGGGTTGCGACAGCAGGACTACAGAT
** ** * *
1083143 -AGTACA-C-AGGGGGGACCGGGCTGATCCCTGGCTTACGCATTCTACCTCTCCGGCCGATTGAG
130 CACAACACCAAGGGGGGACCGGGCTGATCCCCAGCTTACACATTCTACCTCTCCGGCCGACTGAG
* * ** * * * *
1083205 CGCCCGTACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGATTTCATTCCATTTCTAAGCCCCAG
195 CGCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCAAAGACCCAG
* * *
1083270 TCAGACCGAGGGTTGTGGCAGTGGGACCGGCAGCG
260 CCAGACCGAGGGTTGTGGCAGCGGGACCGACAGCG
1083305 CCCGCACGCT
Statistics
Matches: 249, Mismatches: 36, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
354 130 0.52
355 2 0.01
357 4 0.02
359 3 0.01
361 1 0.00
366 1 0.00
367 36 0.14
368 72 0.29
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.22
Consensus pattern (361 bp):
TGAGCGCACGCACGCTCGTTTCATGGGTTGACTTAGGCATACCGAGTTCATTCCCCGTCTAACCA
TACGGAGTTCATTCCCAGCCTAAGATCAGATCAGATCAAGGGTTGCGACAGCAGGACTACAGATC
ACAACACCAAGGGGGGACCGGGCTGATCCCCAGCTTACACATTCTACCTCTCCGGCCGACTGAGC
GCCCGTACGCCCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCAAAGACCCAGC
CAGACCGAGGGTTGTGGCAGCGGGACCGACAGCGGGATCGACAGCATACAGAGAGGGACTGGGCT
GATCCTCGGCTTGCGCATTATGCCTCTCCGCCCGAC
Found at i:1083530 original size:26 final size:25
Alignment explanation
Indices: 1083492--1083543 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 25
1083482 GTTGGCTTAG
*
1083492 GCATATGGGTTCATTCC-ATGTCTAA
1 GCATACGGGTTCATTCCTA-GTCTAA
1083517 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGG-GTTCATTCCTAGTCTAA
1083543 G
1 G
1083544 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 7 0.29
26 16 0.67
27 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (25 bp):
GCATACGGGTTCATTCCTAGTCTAA
Found at i:1084216 original size:26 final size:26
Alignment explanation
Indices: 1084187--1084239 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1084177 GTTGGCTTAG
* *
1084187 GCATACGGAGTTCATCCCCTGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
1084213 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1084239 G
1 G
1084240 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1084726 original size:26 final size:26
Alignment explanation
Indices: 1084690--1084739 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
1084680 GGCTTAGGCA
1084690 TACGGAGTTCATT-CCATGTCTAAGCG
1 TACGGAGTTCATTCCCA-GTCTAAGCG
1084716 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
1084740 ATGGGATCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:1085583 original size:514 final size:509
Alignment explanation
Indices: 1084117--1085769 Score: 1792
Period size: 512 Copynumber: 3.2 Consensus size: 509
1084107 ACCCGTTCGA
* * * * * * *
1084117 TCCCTAGCTTACGCATTTTGCCTCT-TCGACCGACTGAGCGCCCGCATGCTCATTTCGTGGGTTG
1 TCCCCAGCTTGCGCATTCTGCCTCTCT-G-CCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTG
* * * **
1084181 GCTTAGGCATACGGAGTTCATCCCCTGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGA
64 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA
* * * * * *
1084246 TCGGATCGAGGGTT------GC--GA-CAGTA--A-GATCGGTAGCACGCAGGGGGGA-TCAGAC
129 TCGGACCGAAGGTTACGGCAGCAGGACCAGCACCAGGATCGGCAACACGCAGGGGGGACTGAG-C
** ** * * * **
1084298 CAATCCCCGGCTTACGCATTCTGCCTCTCCGGCCGGCTGAGCGCCCGTACGCGCGTTTCATGGGT
193 TGATCCCCATCTTATGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCCCGTTTTGTGGGT
* *
1084363 TAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCTAGACCGAGGGTTGTGGCA-CTG
258 TGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG-CCCAGCTAGACCAAGGGTTGTGGCAGC-G
* *** **
1084427 GGACCGACAGCACGTAGAGGAGGACCGATTCGAT-CCCGAACTTGCGCATTATGCCTCTTCGGCC
321 GGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCG-ACTTGCGCATTATGCCTCTTCGGTT
* * * *
1084491 GGCTCAGCGCCCGCACGCTCATTTCGTGGTTTGACCTAGGCATACGGAGTTCATTCCCAGTCTAA
385 GGCTCAGCG-CCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1084556 GATCGGACCGGATCGAGGGTTGCGGTAGCAGTATCGA-AAACA-CGCAAGGGGACCGGGTCAG
449 GATCGGACCAGATCGAGGGTTGTGGTAGCA-TATCGACACACATCG-GAGGGGACCGAGTCAG
* * *
1084617 TCCCCAGCTTGCGCATTCTGCCTTTCTGACCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGG
1 TCCCCAGCTTGCGCATTCTGCCTCTCTG-CCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGG
* *
1084682 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATGGGAT
65 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAT
* * * * * * * *
1084747 CGGACCGAAGGTTGCGGTAGCAGTACCAGCACCAGGATTGGTAGCACGCAGGGGGTACTGGGCTG
130 CGGACCGAAGGTTACGGCAGCAGGACCAGCACCAGGATCGGCAACACGCAGGGGGGACTGAGCTG
* * * * * *
1084812 ATCCCCATCTTATGCATTCTGCCTCTCTGACTGACTGAGTGCCCGCACGCCCGTTTTGTGGGCTG
195 ATCCCCATCTTATGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCCCGTTTTGTGGGTTG
* * *
1084877 GCTTAGGCATAGGGTGTTCATTCCATGCCTAAGGCCCAGCCAGACCAAGGGTTGTGGCAGCGGGA
260 GCTTAGGCATAGGGAGTTCATTCCATGTCTAA-GCCCAGCTAGACCAAGGGTTGTGGCAGCGGGA
* * * * * *
1084942 CCGACAGCACGCAGAGGGGGACTGGGCTGATCCCTGGCTTGCGCATTATGCCTCTTCGGTTAGCT
324 CCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGTTGGCT
* * * ** * * *
1085007 CAGCCCCCACACACTCGTTTTATGGGTTGACTTATGCATACAGAGTTCACTCCCAATCTAAGATC
389 CAG-CGCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
1085072 GAACCAGACCGAGGGTTGTGATAGCATAAAT-GACAGCACATCGGAGGGGACCGATTCAG
453 GGACCAGATCGAGGGTTGTGGTAGCAT--ATCGACA-CACATCGGAGGGGACCGAGTCAG
** * * * * *
1085131 TCCCTGGCTTACGTATTCTGCCTCTCTAGCCGGCTGAGCGCCTGCACACTCGTTTCATGTGTTGG
1 TCCCCAGCTTGCGCATTCTGCCTCTCT-GCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGG
* * *
1085196 CTTAGGCGTACGAAGTTCATTCCATGTCTAAGCATACGGATTTCATTCCCAGTCTAAGATTGGAT
65 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGAT
* * * **
1085261 TGGACCGAGGGTTACGGCAGCAGGACCAGCAGCAGGATCGGCAACTTGCAGGGGGGGA-TCGAGC
130 CGGACCGAAGGTTACGGCAGCAGGACCAGCACCAGGATCGGCAACACGCA-GGGGGGACT-GAGC
* * * *
1085325 TGATCCCCGA-CTTGTGCATTCTGTCTCTCTGGCCGGCTGAGCGCCCGTATGCCCATTTTGTGGG
193 TGATCCCC-ATCTTATGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCCCGTTTTGTGGG
*
1085389 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCTGGACCAAGGGTTGTGGCAGCG
257 TTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCC-AGCTAGACCAAGGGTTGTGGCAGCG
** *
1085454 GGACCGGTAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTGTTCGGTTG
321 GGACCGACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGTTG
* *
1085519 GCTCAGCGCCGTACGCTCGTTTCGTGGGTTGACTTATGCATACGGTGTTCATTCCCAGTCTAAGA
386 GCTCAGCGCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
1085584 TAGGACCTGATCGAGGGTTGTGGCAGCAGGATCGACA-ACA-CGTAGGGTGGACC-AGGTC-G
451 TCGGACCAGATCGAGGGTTGTGGTAGCA-TATCGACACACATCGGA-GG-GGACCGA-GTCAG
* * * *
1085643 AACCCCAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG-CTCGCACGCTCATTTCGTGGGTT
1 -TCCCCAGCTTGCGCATTCTGCCTCT-CTGCCGGCTGAGCGCCT-GCACGCTCGTTTCGTGGGTT
* * *
1085707 TGCTTAGGCATATGGAGTTCATTACATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
63 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
1085770 TTGAGCCACG
Statistics
Matches: 955, Mismatches: 162, Indels: 59
0.81 0.14 0.05
Matches are distributed among these distances:
500 125 0.13
501 1 0.00
506 2 0.00
508 1 0.00
509 4 0.00
511 5 0.01
512 261 0.27
513 124 0.13
514 249 0.26
515 182 0.19
516 1 0.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (509 bp):
TCCCCAGCTTGCGCATTCTGCCTCTCTGCCGGCTGAGCGCCTGCACGCTCGTTTCGTGGGTTGGC
TTAGGCATACGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATC
GGACCGAAGGTTACGGCAGCAGGACCAGCACCAGGATCGGCAACACGCAGGGGGGACTGAGCTGA
TCCCCATCTTATGCATTCTGCCTCTCTGGCCGGCTGAGCGCCCGTACGCCCGTTTTGTGGGTTGG
CTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAGCTAGACCAAGGGTTGTGGCAGCGGGACC
GACAGCACGTAGAGGGGGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGTTGGCTCA
GCGCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGATCGAGGGTTGTGGTAGCATATCGACACACATCGGAGGGGACCGAGTCAG
Found at i:1085738 original size:158 final size:158
Alignment explanation
Indices: 1085329--1085742 Score: 417
Period size: 158 Copynumber: 2.6 Consensus size: 158
1085319 TCGAGCTGAT
* * * * * * * *
1085329 CCCCGACTTGTGCATTCTGTCTCTCTGGCCGGCTGAGCGCCCGTATGCCCATTTTGTGGGTTGGC
1 CCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCG-CCGTACGCTCATTTCGTGGGTTTGC
* * * *
1085394 TTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCAAGCTGGACCAAGGGTTGTGGCAGCGGGACC
65 TTAGGCATACGGAGTTCATTCCATGTCTAAGCACAACCTGGACCAAGGGTTGTGGCAGCAGGACC
** * * *
1085459 GGTAGCACGTAGAGGGGGACCGGGCCGAT
130 GACAACACGTAGAGGGGGACCAGGCCGAA
* * * * * *
1085488 CCCCGACTTGCGCATTATGCCTGTTCGGTTGGCTCAGCGCCGTACGCTCGTTTCGTGGG-TTGAC
1 CCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCGTACGCTCATTTCGTGGGTTTG-C
* * * * *
1085552 TTATGCATACGGTGTTCATTCCCA-GTCTAAG-ATAGGACCT-GATCGAGGGTTGTGGCAGCAGG
65 TTAGGCATACGGAGTTCATT-CCATGTCTAAGCACA--ACCTGGACCAAGGGTTGTGGCAGCAGG
* * *
1085614 ATCGACAACACGTAG-GGTGGACCAGGTCGAA
127 ACCGACAACACGTAGAGGGGGACCAGGCCGAA
*
1085645 CCCC-AGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCTCGCACGCTCATTTCGTGGGTTTG
1 CCCCGA-CTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGC-CGTACGCTCATTTCGTGGGTTTG
* *
1085709 CTTAGGCATATGGAGTTCATTACATGTCTAAGCA
64 CTTAGGCATACGGAGTTCATTCCATGTCTAAGCA
1085743 TACGGAGTTC
Statistics
Matches: 204, Mismatches: 42, Indels: 18
0.77 0.16 0.07
Matches are distributed among these distances:
156 1 0.00
157 50 0.25
158 113 0.55
159 40 0.20
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.26
Consensus pattern (158 bp):
CCCCGACTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCGTACGCTCATTTCGTGGGTTTGCT
TAGGCATACGGAGTTCATTCCATGTCTAAGCACAACCTGGACCAAGGGTTGTGGCAGCAGGACCG
ACAACACGTAGAGGGGGACCAGGCCGAA
Found at i:1086476 original size:26 final size:27
Alignment explanation
Indices: 1086447--1086500 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
1086437 GTTGACTTAG
1086447 GCATACGGAGTTCA-TCCCCAGTCTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
*
1086473 GCATACGGAGTTCATTCCCCAGTGTAA
1 GCATACGGAGTTCATTCCCCAGTCTAA
1086500 G
1 G
1086501 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 14 0.54
27 12 0.46
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (27 bp):
GCATACGGAGTTCATTCCCCAGTCTAA
Found at i:1086863 original size:26 final size:26
Alignment explanation
Indices: 1086824--1086880 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
1086814 GTGGGTTGAC
* *
1086824 TTAAGCATATGGAGTTCATCCCCAGT
1 TTAAGCATACGGAGGTCATCCCCAGT
*
1086850 TTAAGCATACGGAGGTCATTCCCAGT
1 TTAAGCATACGGAGGTCATCCCCAGT
*
1086876 CTAAG
1 TTAAG
1086881 ACCGGACAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
TTAAGCATACGGAGGTCATCCCCAGT
Found at i:1088919 original size:26 final size:26
Alignment explanation
Indices: 1088883--1088935 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1088873 GTTGACTTAG
1088883 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
1088909 GCATGCGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1088935 G
1 G
1088936 ATCGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1090566 original size:158 final size:156
Alignment explanation
Indices: 1090095--1090593 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 156
1090085 AGTCTAAGCC
* ** *
1090095 TACGGAGTTCATTCCCA-ATCTAAGATCAGACCGGATTGAGAGTTACGGCAGTAGGATCGGTAGC
1 TACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGAGTTACGGCAGCAGGATCGGTAGC
* * * * * ** *
1090159 ACACAGCGGGGACCGGGCTAATCTCCGGCTTGCGCATTCTGCCTCTTCGACCGGCTGAGTACCCA
65 ACGCAGGGGGGACCGGGCTGATC-CCGGCTTACGCATTCTGCCTCTCCG-CCGGCTGAGCGCCCG
*
1090224 CATGCCCGTTTTGTGGGTTGGCTTAGGCA
128 CATGCTCGTTTTGTGGGTTGGCTTAGGCA
* * ** * * ** * *
1090253 AAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACCGAGGGTTGGGGCAACGGGATCGGTAGC
1 TACGGAGTTCATTCCATGTCTAAG-ATCAGACCGGACCGAGAGTTACGGCAGCAGGATCGGTAGC
* * * ** * ** * *
1090317 ATGCAGAGGGGGATCGGGCTGATCCTTGATTTACGCATTATGCCTCTCCAGCTAGCTCAGCGCTC
65 ACGCAG-GGGGGACCGGGCTGATCC-CGGCTTACGCATTCTGCCTCTCC-GCCGGCTGAGCGCCC
* * *
1090382 GCACGCTCGTTTCGTGGGTTGACTTAGGCA
127 GCATGCTCGTTTTGTGGGTTGGCTTAGGCA
* * * *
1090412 TATGGAGTTCATTCCCA-GTCTAAGATCAGACCAGACCGAGAGTTACAGCAGCAGGATCGAT-GA
1 TACGGAGTTCATT-CCATGTCTAAGATCAGACCGGACCGAGAGTTACGGCAGCAGGATCGGTAG-
* * *
1090475 CACGCAGGGGGGACCGGGCTGATCCACGGCTTACGTATTCTGCCTCTCCGTCCGGTTGAGGGCCC
64 CACGCAGGGGGGACCGGGCTGATCC-CGGCTTACGCATTCTGCCTCTCCG-CCGGCTGAGCGCCC
* *
1090540 GTATGCTCGTTTTGTGGGTTGGCTTAGGTA
127 GCATGCTCGTTTTGTGGGTTGGCTTAGGCA
1090570 TACGGAGTTCATTCCATGTCTAAG
1 TACGGAGTTCATTCCATGTCTAAG
1090594 CATACGGAGT
Statistics
Matches: 262, Mismatches: 69, Indels: 20
0.75 0.20 0.06
Matches are distributed among these distances:
157 7 0.03
158 138 0.53
159 113 0.43
160 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (156 bp):
TACGGAGTTCATTCCATGTCTAAGATCAGACCGGACCGAGAGTTACGGCAGCAGGATCGGTAGCA
CGCAGGGGGGACCGGGCTGATCCCGGCTTACGCATTCTGCCTCTCCGCCGGCTGAGCGCCCGCAT
GCTCGTTTTGTGGGTTGGCTTAGGCA
Found at i:1090617 original size:26 final size:26
Alignment explanation
Indices: 1090569--1090619 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
1090559 TGGCTTAGGT
* *
1090569 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTAATTCCATATCTAAGC
1090595 ATACGGAGTTAATTCCCA-ATCTAAG
1 ATACGGAGTTAATT-CCATATCTAAG
1090620 ATCGGATCGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.86
27 3 0.14
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTAATTCCATATCTAAGC
Found at i:1091275 original size:159 final size:159
Alignment explanation
Indices: 1091094--1091477 Score: 450
Period size: 158 Copynumber: 2.4 Consensus size: 159
1091084 TCTCTAATCG
* * *
1091094 GCTGAGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * ** * * * *
1091159 CCCTAG-TCAGACCGAGGGTTGTGGCAGCGGGACCGGCAGCATGCAGAGGGGGATCGAGTCGATT
66 CACTAGACCAAACCGAGGGTTACGACAGCAGGACCGACAGCATACAG-GGGGGATCGAGTCGA-T
* *
1091223 CCC-GACTTGCGTATTATGCCTCTTCGGCCA
129 CCCTGACTTGCGCATTATGCCTCTCCGGCCA
* * *
1091253 GCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCATGTCTAA-
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
* * * * *
1091317 TATTAGACCAAATCGAGGGTTACGACAGCAGGATCGACAGCATACAGGGGGGATCGGGTCGATCC
66 CACTAGACCAAACCGAGGGTTACGACAGCAGGACCGACAGCATACAGGGGGGATCGAGTCGATCC
* * * * *
1091382 CTGGCTTGTGCATTCTGCCTCTCCGGTCG
131 CTGACTTGCGCATTATGCCTCTCCGGCCA
* * * *
1091411 GCTGAGCGCTCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1091476 CA
66 CA
1091478 TACGGAGTTC
Statistics
Matches: 187, Mismatches: 35, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
157 4 0.02
158 94 0.50
159 89 0.48
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.26
Consensus pattern (159 bp):
GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
CACTAGACCAAACCGAGGGTTACGACAGCAGGACCGACAGCATACAGGGGGGATCGAGTCGATCC
CTGACTTGCGCATTATGCCTCTCCGGCCA
Found at i:1091453 original size:158 final size:157
Alignment explanation
Indices: 1091025--1091477 Score: 494
Period size: 159 Copynumber: 2.9 Consensus size: 157
1091015 AGGGTTGTGG
* * ** * * **
1091025 CAGCAGGATCGATAGCACACAGGATGGATCAGGTCGATCCCCGGCTTATGCATTCTGCCTCTCTA
1 CAGCAGGATCGACAGCATACAGGGGGGATCGGGTCGAT-CCCGGCTTGTGCATTCTGCCTCTCCG
* * * *
1091090 ATCGGCTGAGCGCCCGCACGCCCGTTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTC
65 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
* * * ** *
1091155 TAAGCCCTAGTCAGACCGAGGGTTGTGG
130 TAAGCACTAGCCAAACCGAGGGTTACGA
* * * * * * * * * *
1091183 CAGCGGGACCGGCAGCATGCAGAGGGGGATCGAGTCGATTCCCGACTTGCGTATTATGCCTCTTC
1 CAGCAGGATCGACAGCATACAG-GGGGGATCGGGTCGA-TCCCGGCTTGTGCATTCTGCCTCTCC
* * * * *
1091248 GGCCAGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGGAGTTCATTCCATGT
64 GGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGT
* * *
1091313 CTAA-TATTAGACCAAATCGAGGGTTACGA
129 CTAAGCACTAG-CCAAACCGAGGGTTACGA
1091342 CAGCAGGATCGACAGCATACAGGGGGGATCGGGTCGATCCCTGGCTTGTGCATTCTGCCTCTCCG
1 CAGCAGGATCGACAGCATACAGGGGGGATCGGGTCGATCCC-GGCTTGTGCATTCTGCCTCTCCG
* * * *
1091407 GTCGGCTGAGCGCTCACACGCTTGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
65 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTC
1091472 TAAGCA
130 TAAGCA
1091478 TACGGAGTTC
Statistics
Matches: 234, Mismatches: 56, Indels: 9
0.78 0.19 0.03
Matches are distributed among these distances:
157 4 0.02
158 110 0.47
159 119 0.51
160 1 0.00
ACGTcount: A:0.19, C:0.26, G:0.29, T:0.25
Consensus pattern (157 bp):
CAGCAGGATCGACAGCATACAGGGGGGATCGGGTCGATCCCGGCTTGTGCATTCTGCCTCTCCGG
TCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCT
AAGCACTAGCCAAACCGAGGGTTACGA
Found at i:1091479 original size:26 final size:26
Alignment explanation
Indices: 1091449--1091501 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1091439 GTTGGCTTAG
1091449 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
1091475 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1091501 G
1 G
1091502 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1092206 original size:26 final size:26
Alignment explanation
Indices: 1092170--1092222 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1092160 GTTGACTTAG
*
1092170 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
1092196 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1092222 G
1 G
1092223 ATTGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1092549 original size:26 final size:26
Alignment explanation
Indices: 1092513--1092565 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1092503 GTTGACTTAG
1092513 GCATACAGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
1092539 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1092565 G
1 G
1092566 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1093456 original size:26 final size:26
Alignment explanation
Indices: 1093420--1093472 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1093410 GTTGGCTTAG
*
1093420 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
1093446 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1093472 G
1 G
1093473 ATTTGAGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1094945 original size:159 final size:158
Alignment explanation
Indices: 1094634--1094933 Score: 343
Period size: 159 Copynumber: 1.9 Consensus size: 158
1094624 TAAGCCCCAG
*
1094634 TCGGATCGAGGGTTGTGGCAGCGGGATTGACAGCACGCAAAGGGGGACCGGGTCGATCCCCAGCT
1 TCGGATCGAGGGTTGTGGCAGCAGGATTGACAGCACGC-AAGGGGGACCGGGTCGATCCCCAGCT
* * * * * * * *
1094699 TGCGTATTTTGCCGCTCCCACCGGCTCAGCACCCGCACGCACGTTTCGTGGGTTGTCTTATGCCT
65 TACGCATTCTGCCGCTCCCACCGGCTCAACACCCGCACGCACGTGTCGTGGGTTGGCTTAGGCAT
*
1094764 ACGGAGTTCATTCCCAGTCTAAGATCAGA
130 ACGAAGTTCATTCCCAGTCTAAGATCAGA
* * *
1094793 TCGGATCGAGGGTTGTGGTAGCAGGATTGATAGCACGC-AGGAGGTGACCGGGTC-ATTCCTCAG
1 TCGGATCGAGGGTTGTGGCAGCAGGATTGACAGCACGCAAGG-GG-GACCGGGTCGA-TCCCCAG
* ** * * * * ** *
1094856 CTTACGCATTCTGCCTCTCTGACTGGCTGAACGCCCGCACTCTTGTGTGGTGGGTTGGCTTAGGC
63 CTTACGCATTCTGCCGCTCCCACCGGCTCAACACCCGCACGCACGTGTCGTGGGTTGGCTTAGGC
1094921 ATACGAAGTTCAT
128 ATACGAAGTTCAT
1094934 GCCATGTCTA
Statistics
Matches: 115, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
157 3 0.03
158 3 0.03
159 109 0.95
ACGTcount: A:0.18, C:0.26, G:0.31, T:0.25
Consensus pattern (158 bp):
TCGGATCGAGGGTTGTGGCAGCAGGATTGACAGCACGCAAGGGGGACCGGGTCGATCCCCAGCTT
ACGCATTCTGCCGCTCCCACCGGCTCAACACCCGCACGCACGTGTCGTGGGTTGGCTTAGGCATA
CGAAGTTCATTCCCAGTCTAAGATCAGA
Found at i:1096124 original size:26 final size:26
Alignment explanation
Indices: 1096088--1096140 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1096078 GCTTGCTTAG
1096088 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
1096114 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1096140 G
1 G
1096141 ATCGAATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1096499 original size:26 final size:26
Alignment explanation
Indices: 1096469--1096521 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1096459 GTTGGCTTAG
1096469 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
1096495 GCATACTGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1096521 G
1 G
1096522 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1096519 original size:184 final size:184
Alignment explanation
Indices: 1096179--1096876 Score: 675
Period size: 184 Copynumber: 3.7 Consensus size: 184
1096169 AGACCAGCAG
* * * * **
1096179 CAGGATCGACAGCACGCAGGGGGGGATCGAGCCGATCCCTGGCTTACGCATTCTACCTCTTCGGC
1 CAGGATCGACAGCACGCAGGGGGGG-TCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGAT
* * * * **
1096244 CGGCTGAGCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATTACAGAGTTCATCCCCCGTCT
65 CGACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCA-TACAGAGTTCATTCCATGTCT
** *
1096309 AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGATGA
129 AAGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAAGA
* * * * *
1096365 CAGGATCGACAGCACGTAGGGGGGGTCGGGTCGATCCCCAGCTTGCTCATTCTGCCTCTCCGATC
1 CAGGATCGACAGCACGCAGGGGGGGTCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
* * * *
1096430 GATTGAGCACTCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
66 GACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAA
* *
1096495 GCATACTG-AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAAGGTTACGGTAGCAGGACCAGC
131 GCATAC-GAAGTTCATTCCCAGTCTAAGATCAGACCAGACCG-A-G----GGTTGC--GA--AG-
1096559 AA
184 -A
** ** * * ** *
1096561 CAGGATCGGTAGCACGCAGGGGGGACCGAGCCCATCCCCGACTTATGCATTCTGCGTCTCCGATC
1 CAGGATCGACAGCACGCAGGGGGGGTCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
* * * * * * *
1096626 GGCTGAGCTCCTGCACGTTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCA-TCCCTAGTCTA
66 GACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCAT-GTCTA
* * *
1096690 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGCA-A
130 AGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-CGAAGA
** ** * * * *
1096745 CAGGATCGGTAGCACGCAGGGGGGCACGGGCCGAGCCCTGGCTTGCGCATTCTGCCTTTCCGATC
1 CAGGATCGACAGCACGCAGGGGGGGTCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
* * * * **
1096810 GACGGAGCACCCGTATGCTCGTTTCATGGCTT-AGCTTAGGCATAGGGAGTTCATTCCATGTCTA
66 GACTGAGCACCCGCACGCTCGTTTCATGGGTTGA-CTTAGGCATACAGAGTTCATTCCATGTCTA
1096874 AGC
130 AGC
1096877 CCCAGCTGGA
Statistics
Matches: 414, Mismatches: 80, Indels: 38
0.78 0.15 0.07
Matches are distributed among these distances:
183 1 0.00
184 157 0.38
185 72 0.17
186 25 0.06
187 1 0.00
189 1 0.00
190 9 0.02
192 2 0.00
194 2 0.00
195 6 0.01
196 138 0.33
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (184 bp):
CAGGATCGACAGCACGCAGGGGGGGTCGAGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGATC
GACTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCATGTCTAA
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGAAGA
Found at i:1096702 original size:26 final size:26
Alignment explanation
Indices: 1096665--1096717 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
1096655 GTTGACTTAG
1096665 GCATACAGAGTTCA-TCCCTAGTCTAA
1 GCATACAGAGTTCATTCCC-AGTCTAA
1096691 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
1096717 G
1 G
1096718 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 20 0.80
27 4 0.16
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1096861 original size:380 final size:380
Alignment explanation
Indices: 1096078--1096876 Score: 1127
Period size: 380 Copynumber: 2.1 Consensus size: 380
1096068 GCGCCCGCAC
1096078 GCTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGAT
1 GCTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGAT
* * * * *
1096143 CGAATCGGATCGAGGGTTACGGTAGCAGACCAGCAGCAGGATCGACAGCACGCAGGGGGGGATCG
66 CGAACCAGATCGAAGGTTACGGTAGCAGACCAGCAACAGGATCGACAGCACGCAGGGGGGGACCG
* * * * * *
1096208 AGCCGATCCCTGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGCTCCCGCACGCTCGTTTCGTG
131 AGCCCATCCCCGACTTACGCATTCTACCTCTCCGACCGGCTGAGCTCCCGCACGCTCATTTCGTG
*
1096273 GGTTGACTTAGGCATTACAGAGTTCATCCCCCGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
196 GGTTGACTTAGGCATTACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
** * ** * ** * *
1096338 ATCAGACTGGACCGAGGGTTGCGATGACAGGATCGACAGCACGTAGGGGGGGTCGGGTCGATCCC
261 ATCAGACCAGACCAAGGGTTGCGACAACAGGATCGACAGCACGCAGGGGGGCACGGGCCGAGCCC
* ** *
1096403 CAGCTTGCTCATTCTGCCTCTCCGATCGATTGAGCACTCGCACGCTCGTTTCATG
326 CAGCTTGCGCATTCTGCCTCTCCGATCGACGGAGCACCCGCACGCTCGTTTCATG
*
1096458 GGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGA
1 GCTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGA
**
1096523 TC-AGACCAGATCGAAGGTTACGGTAGCAGGACCAGCAACAGGATCGGTAGCACGCA-GGGGGGA
65 TCGA-ACCAGATCGAAGGTTACGGTAGCA-GACCAGCAACAGGATCGACAGCACGCAGGGGGGGA
* * * * * *
1096586 CCGAGCCCATCCCCGACTTATGCATTCTGCGTCTCCGATCGGCTGAGCTCCTGCACGTTCATTTC
128 CCGAGCCCATCCCCGACTTACGCATTCTACCTCTCCGACCGGCTGAGCTCCCGCACGCTCATTTC
*
1096651 GTGGGTTGACTTAGGCA-TACAGAGTTCATCCCTAGTCTAAGCATACGAAGTTCATTCCCAGTCT
193 GTGGGTTGACTTAGGCATTACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCT
* * **
1096715 AAGATCAGACCAGACCAAGGGTTGTGGCAACAGGATCGGTAGCACGCAGGGGGGCACGGGCCGAG
258 AAGATCAGACCAGACCAAGGGTTGCGACAACAGGATCGACAGCACGCAGGGGGGCACGGGCCGAG
** * * *
1096780 CCCTGGCTTGCGCATTCTGCCTTTCCGATCGACGGAGCACCCGTATGCTCGTTTCATG
323 CCCCAGCTTGCGCATTCTGCCTCTCCGATCGACGGAGCACCCGCACGCTCGTTTCATG
*
1096838 GCTTAGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1 GCTT-GCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1096877 CCCAGCTGGA
Statistics
Matches: 368, Mismatches: 48, Indels: 6
0.87 0.11 0.01
Matches are distributed among these distances:
380 185 0.50
381 159 0.43
382 24 0.07
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24
Consensus pattern (380 bp):
GCTTGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACTGAGTTCATTCCCAGTCTAAGAT
CGAACCAGATCGAAGGTTACGGTAGCAGACCAGCAACAGGATCGACAGCACGCAGGGGGGGACCG
AGCCCATCCCCGACTTACGCATTCTACCTCTCCGACCGGCTGAGCTCCCGCACGCTCATTTCGTG
GGTTGACTTAGGCATTACAGAGTTCATCCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
ATCAGACCAGACCAAGGGTTGCGACAACAGGATCGACAGCACGCAGGGGGGCACGGGCCGAGCCC
CAGCTTGCGCATTCTGCCTCTCCGATCGACGGAGCACCCGCACGCTCGTTTCATG
Found at i:1097582 original size:26 final size:26
Alignment explanation
Indices: 1097545--1097598 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
1097535 GGTTGACTTC
*
1097545 AGCATACTGAGTTCA-TCCCTAGTCTA
1 AGCATACAGAGTTCATTCCC-AGTCTA
1097571 AGCATACAGAGTTCATTCCCAGTCTA
1 AGCATACAGAGTTCATTCCCAGTCTA
1097597 AG
1 AG
1097599 ATCAGACCGT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
AGCATACAGAGTTCATTCCCAGTCTA
Found at i:1098440 original size:88 final size:88
Alignment explanation
Indices: 1098325--1098502 Score: 347
Period size: 88 Copynumber: 2.0 Consensus size: 88
1098315 CGGACCGAGG
1098325 GTTGCGACAGTACGCAGGGGGGACTGGGTTGATCCTCGGCTTATGCATTCTACCTTTCCAGTCGA
1 GTTGCGACAGTACGCAGGGGGGACTGGGTTGATCCTCGGCTTATGCATTCTACCTTTCCAGTCGA
*
1098390 CTGAGTGCTGGCACGCTCGTTTC
66 CTGAGTGCTCGCACGCTCGTTTC
1098413 GTTGCGACAGTACGCAGGGGGGACTGGGTTGATCCTCGGCTTATGCATTCTACCTTTCCAGTCGA
1 GTTGCGACAGTACGCAGGGGGGACTGGGTTGATCCTCGGCTTATGCATTCTACCTTTCCAGTCGA
1098478 CTGAGTGCTCGCACGCTCGTTTC
66 CTGAGTGCTCGCACGCTCGTTTC
1098501 GT
1 GT
1098503 GGGTTGGCTT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 89 1.00
ACGTcount: A:0.15, C:0.26, G:0.30, T:0.29
Consensus pattern (88 bp):
GTTGCGACAGTACGCAGGGGGGACTGGGTTGATCCTCGGCTTATGCATTCTACCTTTCCAGTCGA
CTGAGTGCTCGCACGCTCGTTTC
Found at i:1100258 original size:25 final size:26
Alignment explanation
Indices: 1100230--1100281 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
1100220 GTTGACTTAG
* *
1100230 GCATATGGATTTCA-TCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1100255 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1100281 G
1 G
1100282 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1100969 original size:26 final size:26
Alignment explanation
Indices: 1100940--1100992 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1100930 GTTGACTTAG
1100940 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1100966 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1100992 G
1 G
1100993 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1101313 original size:26 final size:26
Alignment explanation
Indices: 1101283--1101335 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1101273 GTTGGCTTAG
1101283 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
1101309 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
1101335 G
1 G
1101336 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:1102029 original size:26 final size:26
Alignment explanation
Indices: 1101993--1102067 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
1101983 ACTTAGGCAT
1101993 ACGGAGTTCATCCCCAGTCTAAGCAC
1 ACGGAGTTCATCCCCAGTCTAAGCAC
*
1102019 ACGGAGTTCATCCCCAGTCTAAGCAT
1 ACGGAGTTCATCCCCAGTCTAAGCAC
*
1102045 ACGGAGTTCATTCCCAGTCTAAG
1 ACGGAGTTCATCCCCAGTCTAAG
1102068 ATAGGACTGG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.23
Consensus pattern (26 bp):
ACGGAGTTCATCCCCAGTCTAAGCAC
Found at i:1102411 original size:26 final size:26
Alignment explanation
Indices: 1102381--1102433 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1102371 GTTGACTTAG
1102381 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
1102407 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1102433 G
1 G
1102434 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1102910 original size:26 final size:26
Alignment explanation
Indices: 1102880--1102932 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
1102870 GTTGGCTTAG
*
1102880 GCATATGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
* *
1102906 GCATACGGGGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1102932 G
1 G
1102933 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1104172 original size:159 final size:156
Alignment explanation
Indices: 1103738--1104292 Score: 520
Period size: 159 Copynumber: 3.5 Consensus size: 156
1103728 CCCCGACTAG
* * * * * * *
1103738 CCTCTCCGGCCGGCTGATCCCCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTTCGGTCGGCTGAGCACCCGCACACTCATTT-TTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
1103803 CCCCAGTCTAAGATCGAATCGAACCGAGGGTTGCGACAGCAAGATCGGTAGCACGCAGTGGGGAC
65 TCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGGGGGGAC
* *
1103868 CAGATCGATCCCCGACTTACGCATTCTA
130 CAGGTCGAT-CCCGACTTGCGCATTCTA
* ** * * * * *
1103896 CCTCTCCGACCGGCTGAGCACCCGCACACCCATTTCATGGGTTGGCTTAAGCATAGGGAGTTCAT
1 CCTCTTCGGTCGGCTGAGCACCCGCACACTCATTT-TTGGGTTGACTTAGGCATACGGAGTTCAT
** * * * * * ** ** *
1103961 T-CCATGTCTAAGCCCCAGTCAGACCGAGGATTGTGGGAGTGGGACCGGTAGCACGCAGAGGGGG
65 TCCCA-GTCTAAGATCGAATCGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAG-GGGGG
* * * *
1104025 ACCGGGCCGATCCCTGGCTTGCGCATTATA
128 ACCAGGTCGATCCC-GACTTGCGCATTCTA
* * * * * *
1104055 CCTCTTCGGTCGACTCAACACCCGCACGCTCGTTTGTTGGGTTGACTTATGCATACGGAGTTCAT
1 CCTCTTCGGTCGGCTGAGCACCCGCACACTCATTT-TTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
1104120 TCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCAACAGCAGGATCGATAGCACGCAGGGGGGGA
65 TCCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCA-GGGGGGA
*
1104185 CCAGGTCGATGCCCGACTTGTGCATTCTA
129 CCAGGTCGAT-CCCGACTTGCGCATTCTA
* * * *
1104214 CCT-TTCAGGTCGGCTGAGCGCCCGCACTCTCATTTTGTGGGTTGGCTTAGGCATACGAAGTTCA
1 CCTCTTC-GGTCGGCTGAGCACCCGCACACTCATTTT-TGGGTTGACTTAGGCATACGGAGTTCA
1104278 TTCCCAGTCTAAGAT
64 TTCCCAGTCTAAGAT
1104293 TTTGAGCCAC
Statistics
Matches: 313, Mismatches: 76, Indels: 15
0.77 0.19 0.04
Matches are distributed among these distances:
157 3 0.01
158 102 0.33
159 201 0.64
160 7 0.02
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.23
Consensus pattern (156 bp):
CCTCTTCGGTCGGCTGAGCACCCGCACACTCATTTTTGGGTTGACTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCGAATCGGACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGGGGGGACC
AGGTCGATCCCGACTTGCGCATTCTA
Found at i:1104989 original size:26 final size:26
Alignment explanation
Indices: 1104960--1105011 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1104950 GTTGACTTAG
1104960 GCATACGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
1104986 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1105012 TATCGGACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1106366 original size:158 final size:155
Alignment explanation
Indices: 1105872--1106356 Score: 441
Period size: 158 Copynumber: 3.1 Consensus size: 155
1105862 TAAGCATACG
* ** * * *
1105872 GAGTTCATTCCTAGTCTAAGATCAGGCCGGATAGAGGGTTGCGGCAGCAGGATCGACAGCACGTA
1 GAGTTCATTCCCAGTCTAAGATCA-GCCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCATGAA
* * * * * * *
1105937 GGGGGGACCGGGCCGATTCCCAGCTTGCGTATTCTGCCTCTCCGACCGACTGAGTGCCTGCACAC
65 GGGGGGACCGGGTCGA-TCCTAGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGC
* *
1106002 CCATTTCGTGGGTTGGCTTAGGCATAGG
129 TCATTTCGTGGGTTGGCTTAGGCAT-GC
* ** * * * * *
1106030 GAGTTTATT-CCATGTCTAAGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGATCGACAACATGC
1 GAGTTCATTCCCA-GTCTAAG-ATCAGCCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCATGA
* * * ** * * * * *
1106094 AGAGGGGGACCGGGTCGATCCTCGGCTTACGCATTATGCCTCTTCGATTGGCTCATCACCCGTAC
64 AG-GGGGGACCGGGTCGATCCT-AGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCAC
* * * *
1106159 GCTCATTTTGTGGGTTGACTTATGCATAC
127 GCTCATTTCGTGGGTTGGCTTAGGCATGC
* * *
1106188 GAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGATGGTTGCGACAGTAGGATCGATAGCATGA
1 G-AGTTCATTCCCAGTCTAAGATCAG-CCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCATGA
* * * * *
1106253 AGGGGGGACTGGGTCTATCCGTAGCTTGTGCATTTTGCCTATCCGACCGACTGAGCGCCCGCACG
64 AGGGGGGACCGGGTCGATCC-TAGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACG
* *
1106318 CTCGTTTCATGGGTTGGCTTAGGCATGC
128 CTCATTTCGTGGGTTGGCTTAGGCATGC
1106346 AGAGTTCATTC
1 -GAGTTCATTC
1106357 TATGTCTAAG
Statistics
Matches: 250, Mismatches: 68, Indels: 18
0.74 0.20 0.05
Matches are distributed among these distances:
157 2 0.01
158 131 0.52
159 114 0.46
160 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.30, T:0.25
Consensus pattern (155 bp):
GAGTTCATTCCCAGTCTAAGATCAGCCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCATGAAG
GGGGGACCGGGTCGATCCTAGCTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTC
ATTTCGTGGGTTGGCTTAGGCATGC
Found at i:1106389 original size:26 final size:26
Alignment explanation
Indices: 1106340--1106392 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1106330 GTTGGCTTAG
* *
1106340 GCATGCAGAGTTCATTCTATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
1106366 GCATACAGAGTTCATTCCCA-GTCTAA
1 GCATACAGAGTTCATT-CCATGTCTAA
1106392 G
1 G
1106393 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:1106775 original size:26 final size:26
Alignment explanation
Indices: 1106738--1106790 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1106728 GTTGACTTAG
1106738 GCATACGAAGTTCATCCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
* *
1106764 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATCCCCAATCTAA
1106790 G
1 G
1106791 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAATCTAA
Found at i:1106870 original size:899 final size:878
Alignment explanation
Indices: 1104910--1107013 Score: 2415
Period size: 899 Copynumber: 2.4 Consensus size: 878
1104900 ACGCATCCTG
* * * *
1104910 CCTCTCCGGTCGGCTGAGCGCCCGTACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCAT
1 CCTCTCCGGTCGGTTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
1104975 CCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTAATATCGGACCGGACCGAGGGTTGCGACAA
66 CCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAG
* * * * *
1105040 CAAGATCGACAGCA-CTAGGGGGACCGGGCTGATCCCCGACTTGCGCATTCTTCCTCTCCGACAG
131 CAGGATCGACAGCAGC-AGGGGGACCGGGCTGAT-CCCGGCTTGCGTATTCTGCCTCTCCGACCG
** * * **
1105104 GGTAAGCGCC--CACACGCCTGTTTTATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
194 ACTGAGCGCCTGCACAC-CC-ATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* ** * ** ** *
1105167 AGCCCCAATCGGACCGAGGGTTACGGCCGCGGG-CCGGTAACACACAGAGGGGGATAGGGTCGAT
257 AGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAACATGCAGAGGGGGATCGGGTCGAT
* * *
1105231 CCTCGGCTTACGCATTATGCCTATCCGACCAGTTCAGCGCCCGCACGCTCGTTTTGTGGGTTGAC
322 CCTCGGCTTACGCATTATGCCTATCCGACCAGCTCAGCACCCGCACGCTCATTTTGTGGGTTGAC
* *
1105296 TTAGGCATACGAAGTTCATTCCCAATTTAAGATCGAACCGGATCGAGGGTTGCAGCAGTAGGATC
387 TTAGGCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCAGCAGTAGGATC
* * *
1105361 GATAGCATGCAGGGGGGTACCGGGTCGATCCTCAGCTTGCACATTCTACCTCTCCGACCGGCTGA
452 GATAGCATGAAGGGGGGTACCGGGTCGATCCTCAGCTTGCACATTCTACCTATCCGACCGACTGA
* * * *
1105426 GCACCCACACGTTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTTATTCCATGTCTAAGCATAC
517 GCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATAC
*
1105491 GAAGTTCATTCCCAATCTAAGATCAGACCAGACTGAAGGTTGCGGCAGTAGGTCCAACAGCAAGA
582 GAAGTTCATTCCCAATCTAAGATCAGACCAGACTGAAGGCTGCGGCAGTAGGTCCAACAGCAAGA
* * * * * *
1105556 TTGGCAGCACGCAGGGGTTGACTGAGCCGAGCCTCAGCTTACGCATTCTGCCTCTTTGGCCGATT
647 -TGGCAGCACGCAGGGGTGGACAGAGCCGAGCCTCAGCTTACGCATTCTACCTCTCTGACCGACT
* *
1105621 GAGCACCCGTATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCGTTCCATGTCTAAGCCC
711 GAGCACCCGTATGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCGTTCCATGTCTAAGCCC
* * * * * **
1105686 CAGGCGGACCGAGGGTTGGGGCAGCAGGACTAGCAGCGGGATCGACAGCACGTAGAGGGGGATTG
776 CAGCCGAACCGAGGGTTGGGGCAGCAAGACTAGCAGCGGGATCGACAGCACGCAGAAGGGGACCG
* * *
1105751 GACTGATCCTAGCTTGCGCATTATGCCTCTCCGATCGG
841 GACTGATCCCAGCTTGCGCATTATGCCTCTCCGACCGA
* * *
1105789 CCTTTCCAGTCGGTTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCAT
1 CCTCTCCGGTCGGTTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* ** *
1105854 CCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGG-CCGGATAGAGGGTTGCGGCA
66 CCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACCGAGGGTTGCGACA
* * *
1105918 GCAGGATCGACAGCACGTAGGGGGGACCGGGCCGATTCCCAGCTTGCGTATTCTGCCTCTCCGAC
130 GCAGGATCGACAGCA-GCA-GGGGGACCGGGCTGA-TCCCGGCTTGCGTATTCTGCCTCTCCGAC
* *
1105983 CGACTGAGTGCCTGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTA
192 CGACTGAGCGCCTGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * *
1106048 AGCCCCAGTCGGACCGAGGGTTGTGGCAGTGGGATCGACAACATGCAGAGGGGGACCGGGTCGAT
257 AGCCCCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAACATGCAGAGGGGGATCGGGTCGAT
* * *** * *
1106113 CCTCGGCTTACGCATTATGCCTCTTCGATTGGCTCATCACCCGTACGCTCATTTTGTGGGTTGAC
322 CCTCGGCTTACGCATTATGCCTATCCGACCAGCTCAGCACCCGCACGCTCATTTTGTGGGTTGAC
* * *
1106178 TTATGCATACGAAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGATGGTTGC-GACAGTAGGA
387 TTAGGCATACGAAGTTCATTCCCAATCTAAGATCGA-ACCGGACCGAGGGTTGCAG-CAGTAGGA
* * ** * *
1106241 TCGATAGCATGAAGGGGGG-ACTGGGTCTATCCGT-AGCTTGTGCATTTTGCCTATCCGACCGAC
450 TCGATAGCATGAAGGGGGGTACCGGGTCGATCC-TCAGCTTGCACATTCTACCTATCCGACCGAC
* * * * *
1106304 TGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATGCAGAGTTCATTCTATGTCTAAGCA
514 TGAGCACCCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCA
* ** * *
1106369 TAC-AGAGTTCATTCCCAGTCTAAGATTTTGAGCCACG-GTGCACATGCTGGGCTCAGGCATGTG
579 TACGA-AGTTCATTCCCAATCTAAGA-TCAGA-CCA-GACTG-A-AGGCT--G--C-GGCA---G
*** ** * * * *
1106432 CTAGTGTCACATTTTTTTTGCCCGA-GGTAGCACGCAGGGG-GGACCAG-GTCGATCCTCGGCTT
630 -TAG-GTC-CA-----ACAGCAAGATGGCAGCACGCAGGGGTGGA-CAGAGCCGAGCCTCAGCTT
* * *
1106494 ACGTATTCTACCTCTCTGATCGACTGAGCACCCGTATGCTCATTTCGTGGGTTGGCTTAGGCATG
686 ACGCATTCTACCTCTCTGACCGACTGAGCACCCGTATGCTCATTTCGTGGGTTGGCTTAGGCATA
* * *
1106559 CGAAGTTCGTTCCATGTCTAAGCCCCAGCCGAACTGAGGGTTGTGGCAGCAAGA-TCGGCAGCGG
751 CGAAGTTCGTTCCATGTCTAAGCCCCAGCCGAACCGAGGGTTGGGGCAGCAAGACT-AGCAGCGG
* * * *
1106623 GATCGACAGCAGGCAGAAGGGGACCGGGCTGATCCCCGGCTTGTGCATTATGCCTCTCCGACCGA
815 GATCGACAGCACGCAGAAGGGGACCGGACTGAT-CCCAGCTTGCGCATTATGCCTCTCCGACCGA
* * * * *
1106688 CCTCTCCGGTCGGTTGAGCACCTGCAAGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCAT
1 CCTCTCCGGTCGGTTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
1106753 CCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCAGACCGAGGGTTGCGATAG
66 CCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAG
* * * ** * *
1106818 CAGGATCGGCAGCATGCAGAGGGGATCGAGCTGATCCCTGGCTTATGTATTCTGTCTCTCTGACC
131 CAGGATCGACAGCA-GCAG-GGGGACCGGGCTGATCCC-GGCTTGCGTATTCTGCCTCTCCGACC
* ** * *
1106883 -AGCTGAGCACCTGCACGTCCATTTCGTTGGTTGGCTTTGGCATAGGGAGTTCATTCCATGTCTA
193 GA-CTGAGCGCCTGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTA
* * * *
1106947 AGCCCCAGTCAGACCGAGGGTTGT-GCTAGCGAGACCGACAGCATGCAGAGGGGGATCGGGCCGA
257 AGCCCCAGTCGGACCGAGGGTTGTGGC-AGCGGGACCGACAACATGCAGAGGGGGATCGGGTCGA
1107011 TCC
321 TCC
1107014 CCTATGTCAC
Statistics
Matches: 1024, Mismatches: 160, Indels: 62
0.82 0.13 0.05
Matches are distributed among these distances:
879 125 0.12
880 4 0.00
881 227 0.22
882 158 0.15
883 10 0.01
884 2 0.00
885 3 0.00
887 1 0.00
889 1 0.00
890 4 0.00
893 1 0.00
894 3 0.00
895 3 0.00
896 2 0.00
897 1 0.00
898 163 0.16
899 312 0.30
901 4 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (878 bp):
CCTCTCCGGTCGGTTGAGCACCCGTACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
CCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAG
CAGGATCGACAGCAGCAGGGGGACCGGGCTGATCCCGGCTTGCGTATTCTGCCTCTCCGACCGAC
TGAGCGCCTGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCC
CCAGTCGGACCGAGGGTTGTGGCAGCGGGACCGACAACATGCAGAGGGGGATCGGGTCGATCCTC
GGCTTACGCATTATGCCTATCCGACCAGCTCAGCACCCGCACGCTCATTTTGTGGGTTGACTTAG
GCATACGAAGTTCATTCCCAATCTAAGATCGAACCGGACCGAGGGTTGCAGCAGTAGGATCGATA
GCATGAAGGGGGGTACCGGGTCGATCCTCAGCTTGCACATTCTACCTATCCGACCGACTGAGCAC
CCACACGCTCATTTCATGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACGAAG
TTCATTCCCAATCTAAGATCAGACCAGACTGAAGGCTGCGGCAGTAGGTCCAACAGCAAGATGGC
AGCACGCAGGGGTGGACAGAGCCGAGCCTCAGCTTACGCATTCTACCTCTCTGACCGACTGAGCA
CCCGTATGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCGTTCCATGTCTAAGCCCCAGCC
GAACCGAGGGTTGGGGCAGCAAGACTAGCAGCGGGATCGACAGCACGCAGAAGGGGACCGGACTG
ATCCCAGCTTGCGCATTATGCCTCTCCGACCGA
Found at i:1113320 original size:26 final size:26
Alignment explanation
Indices: 1113290--1113340 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1113280 GTTGACTTCG
*
1113290 GCATATGGAGTTCA-TCCCTAGTCTAA
1 GCATACGGAGTTCATTCCC-AGTCTAA
1113316 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
1113341 TGATCGGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1113837 original size:159 final size:157
Alignment explanation
Indices: 1113316--1113975 Score: 534
Period size: 159 Copynumber: 4.2 Consensus size: 157
1113306 CCTAGTCTAA
* * ** ** * **
1113316 GCATACGGAGTTCATTCCCA-GTCTATGATCGGATCGGACCGAGGGTTACGACAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGATCGGA-CGAGGGTTGTGGTAG-AAGATCGAT
* * * * * *
1113380 AGCATGC--AGGGGGATCGGGTCGATCCCCGGCCTGCGTATTATGCCTCTTCGA-CTGGCTTAGC
63 AGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATC-GGCTGAGC
* *
1113442 GCCCGCACGCTCATTTTGTGGGTTGACTTGG
127 GCCCGCACGCTCGTTTTGTGGGTTGACTTTG
*** * *
1113473 GCATACGGAGTTCATTCCCA-GTCTAAGATTGGATCGGACCGAGGGTTGCAATAGCAGGATCGAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGATCGGA-CGAGGGTTGTGGTAG-AAGATCGAT
* * * * * *
1113537 AGCACGCA-AGGGGGATCGGGCCGATCCCCAGCTTGCGCATTCTGCCTCTCCAACCGGTTGAGCA
63 AGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCG
* * * * *
1113601 CCCGTACGCCCGTTTGGTGGGTTGGCTTAG
128 CCCGCACGCTCGTTTTGTGGGTTGACTTTG
* * *** * * * *
1113631 GCATAGGGAGTTCATTCCATGCCT-A-ATCCCCAGCCAGACTGAGGGTTGTGGTAGTGAGACCGA
1 GCATACGGAGTTCATTCCATGTCTAAGAT-TGGA-TCGGAC-GAGGGTTGTGGTAG-AAGATCGA
* * * *
1113694 TAGCACGCAGAGAGGGATCGGGTCGATCCTC-GACTTGCGCATTATGCCTCTTCGATCGGCTCAG
62 TAGCACGCAGAGGGGGATCGGGTCGATCCCCAG-CTTGCGCATTATGCCTCTCCGATCGGCTGAG
* *
1113758 TGCCCGCATGCTCGTTTTGTGGGTTGACTTATG
126 CGCCCGCACGCTCGTTTTGTGGGTTGACTT-TG
* * * * *
1113791 G-ATACGGATTTCATTCCCA-GTCTAAGATTGGATTGGATCAAGGGTTGTGGCAGCAAGATTGAT
1 GCATACGGAGTTCATT-CCATGTCTAAGATTGGATCGGA-CGAGGGTTGTGGTAG-AAGATCGAT
* * * *
1113854 AGCACACAGAGGGGGACCGGGTCGATCCCCAGCTTGCGCATTCTGCCTCTCCGATCGACTGAGCG
63 AGCACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCG
* * * *
1113919 CTCGCACGCTCGTTTCGTTGGTTGGC-TTG
128 CCCGCACGCTCGTTTTGTGGGTTGACTTTG
1113948 GCCATACGGAGTTCATTCCATGTCTAAG
1 G-CATACGGAGTTCATTCCATGTCTAAG
1113976 CATACGGAGT
Statistics
Matches: 401, Mismatches: 85, Indels: 32
0.77 0.16 0.06
Matches are distributed among these distances:
156 2 0.00
157 73 0.18
158 118 0.29
159 197 0.49
160 9 0.02
161 2 0.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.25
Consensus pattern (157 bp):
GCATACGGAGTTCATTCCATGTCTAAGATTGGATCGGACGAGGGTTGTGGTAGAAGATCGATAGC
ACGCAGAGGGGGATCGGGTCGATCCCCAGCTTGCGCATTATGCCTCTCCGATCGGCTGAGCGCCC
GCACGCTCGTTTTGTGGGTTGACTTTG
Found at i:1113986 original size:26 final size:26
Alignment explanation
Indices: 1113950--1114001 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1113940 TTGGCTTGGC
1113950 CATACGGAGTTCATT-CCATGTCTAAG
1 CATACGGAGTTCATTCCCA-GTCTAAG
1113976 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
1114002 ATTTTGAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:1114706 original size:26 final size:26
Alignment explanation
Indices: 1114670--1114722 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1114660 GTTGACTTAG
1114670 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1114696 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1114722 G
1 G
1114723 ATTAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1115049 original size:26 final size:26
Alignment explanation
Indices: 1115013--1115065 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1115003 GTTGGCTTAG
1115013 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
1115039 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1115065 G
1 G
1115066 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1115767 original size:26 final size:26
Alignment explanation
Indices: 1115738--1115790 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1115728 GTTAACTTAG
*
1115738 GCATACGGAGTTTATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* **
1115764 GCATATGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1115790 G
1 G
1115791 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1116149 original size:159 final size:157
Alignment explanation
Indices: 1115764--1116160 Score: 395
Period size: 159 Copynumber: 2.5 Consensus size: 157
1115754 CCCAGTCTAA
* * *
1115764 GCATATGGAGTTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGACA
1 GCATATGGAGTTCA-TTCCAGTCTAAGATCA-ACCGGACCGAGGGTTGCGATAGCAGGATCGACA
* * * * *
1115829 GCAAGCAG-GGGGGATCGGGCCGATCCCCGGCTTGCACCATCTGCCTCTCCGACCGGCTGAGCAC
64 GCACGCAGAGGGGGATCAGACCGATCCCCGGCTTGCACCATATGCCTCTCCGACCGGCTCAGCAC
* **
1115893 CCGCACGCCCTTTTCGTGGGCTGGCTTAG
129 CCGCACGCCCATTTCGTGGGCTAACTTAG
* * ** * * * * * *
1115922 GCATAGGGAGTTCATTCCATATCTAAGCCCCAACCGGATCGAGGGTTGTGGTAGCGGGA-CCAGT
1 GCATATGGAGTTCATTCCA-GTCTAAG-ATCAACCGGACCGAGGGTTGCGATAGCAGGATCGA-C
* * * *
1115986 AGCACGTAGAGGGGGATCAGATCGATCCCCGGCTTGGA-CATTATGCCTCTCCGATCGGCTCAGC
63 AGCACGCAGAGGGGGATCAGACCGATCCCCGGCTTGCACCA-TATGCCTCTCCGACCGGCTCAGC
* * **
1116050 GCCCGCACGCTCATTTCGTGGTTTAACTTAG
127 ACCCGCACGCCCATTTCGTGGGCTAACTTAG
* * * *
1116081 GCATATAGAGTTCATTACCAGTCTAAGATTGAACCAGACCAAGGGTTGCGATAGCAGGATCGACA
1 GCATATGGAGTTCATT-CCAGTCTAAGA-TCAACCGGACCGAGGGTTGCGATAGCAGGATCGACA
*
1116146 GCACGCATAGGGGGA
64 GCACGCAGAGGGGGA
1116161 CCGGGTCGGT
Statistics
Matches: 186, Mismatches: 45, Indels: 15
0.76 0.18 0.06
Matches are distributed among these distances:
157 7 0.04
158 48 0.26
159 126 0.68
160 5 0.03
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (157 bp):
GCATATGGAGTTCATTCCAGTCTAAGATCAACCGGACCGAGGGTTGCGATAGCAGGATCGACAGC
ACGCAGAGGGGGATCAGACCGATCCCCGGCTTGCACCATATGCCTCTCCGACCGGCTCAGCACCC
GCACGCCCATTTCGTGGGCTAACTTAG
Found at i:1116269 original size:26 final size:26
Alignment explanation
Indices: 1116240--1116292 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1116230 GTTGGCTTAG
1116240 GCATACGGAGTTCATTC-CATGTCTAA
1 GCATACGGAGTTCATTCTCA-GTCTAA
**
1116266 GCATTTGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCTCAGTCTAA
1116292 G
1 G
1116293 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCTCAGTCTAA
Found at i:1116633 original size:184 final size:182
Alignment explanation
Indices: 1116088--1116634 Score: 612
Period size: 183 Copynumber: 3.0 Consensus size: 182
1116078 TAGGCATATA
* * * * *
1116088 GAGTTCATTACCAGTCTAAGATTGAACCAGACCAAGGGTTGCGATAGCAGGATCGACAGCACGCA
1 GAGTTCATTCCCAGTCTAAGATCG-ACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCATGC-
* * * * * * * * *
1116153 TAGGGGGACCGGGTCGGTCCCTGACTTGTGCATTTTGCCTCTCCGGCCGGTTGAGCGCCTGCACG
64 -AGGGGGATCGGGCCGGTCCCAGGCTTGCGCATTCTACCTCTTCGGCCGGTTGAGCGCCCGCACG
* * * **
1116218 CTAGTTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATTTG
128 CTCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACG
* * * * *
1116273 GAGTTCATTCTCAGTCTAAGATCAGATCGGACCGAGGGTTGCTGTAGTAGGATCGACAGCATGTC
1 GAGTTCATTCCCAGTCTAAGATC-GACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCATG-C
* * * * *
1116338 -GGGGGATCGAGCTGGTCCCCGGCTTGCGCATTCTACCTCTTCGGCCGGTTGAGCGTCCGCCCGC
64 AGGGGGATCGGGCCGGTCCCAGGCTTGCGCATTCTACCTCTTCGGCCGGTTGAGCGCCCGCACGC
* * ** * *
1116402 TCATTTCATGGGTTGACTTATTCATAAAGAGTTCATCCCCA-GTCTAAGCATACG
129 TCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCAT-TCCATGTCTAAGCATACG
* * *
1116456 GAGTTCATTCCCAGTCTAAGATCGTAGCGGACCTAGGGTTGCGGTAGCAGGATCGGCAGCATGCA
1 GAGTTCATTCCCAGTCTAAGATCG-ACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCATGCA
* * * *
1116521 GGGGGGATCGGGCCGATCCCAGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGCACCCGCACGC
65 -GGGGGATCGGGCCGGTCCCAGGCTTGCGCATTCTACCTCTTCGGCCGGTTGAGCGCCCGCACGC
* *
1116586 CCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
129 TCGTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGC
1116635 CCCAATCGGA
Statistics
Matches: 298, Mismatches: 57, Indels: 15
0.81 0.15 0.04
Matches are distributed among these distances:
182 2 0.01
183 148 0.50
184 95 0.32
185 51 0.17
186 2 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (182 bp):
GAGTTCATTCCCAGTCTAAGATCGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCATGCAG
GGGGATCGGGCCGGTCCCAGGCTTGCGCATTCTACCTCTTCGGCCGGTTGAGCGCCCGCACGCTC
GTTTCATGGGTTGGCTTAGGCATAAGGAGTTCATTCCATGTCTAAGCATACG
Found at i:1116949 original size:159 final size:158
Alignment explanation
Indices: 1116449--1116951 Score: 451
Period size: 159 Copynumber: 3.2 Consensus size: 158
1116439 CCCAGTCTAA
* * * *
1116449 GCATACGGAGTTCATTCCCA-GTCTAAGATCGTAGCGGACCTAGGGTTGCGGTAGCAGGATCGGC
1 GCATACGGAGTTCATT-CCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * *
1116513 AGCATGCAGGGGGGATCGGGCCGATCCCAGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGCAC
65 AGCACGCAAGGGGGATCGGGCCGATCCCTGACTTACGCATTATGCCTCTCCGGCCGGCTGAGCGC
* * * *
1116578 CCGCACGCCCGTTTCATGGGTTGGCTTAG
130 CCGCATGCTCATTTCATTGGTTGGCTTAG
* ** * * * * * *
1116607 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAATCGGATCGAGGGTTGTGGTAGCGGGACCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
* * **** * * ** *
1116672 GCACGTAGAGGAGGA-CTGAATTGAT-CTTCGACTT-GGACATTATGCCTCTCCGGTTGGCTCAG
66 GCACGCA-AGGGGGATC-GGGCCGATCCCT-GACTTACG-CATTATGCCTCTCCGGCCGGCTGAG
* **
1116734 CGACCGCATGCTCATTTCA-TGGTTTAACTTAG
127 CGCCCGCATGCTCATTTCATTGG-TTGGCTTAG
* * ** *
1116766 GCATACGGAGTTCATTAC-TAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGTAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGAC
* * *
1116830 AGCACGCATAGGGGGATCGGGCCGATCCCTGACTTATGCATTATGCCTCTCCGGCCGGTTGAGTG
65 AGCACGCA-AGGGGGATCGGGCCGATCCCTGACTTACGCATTATGCCTCTCCGGCCGGCTGAGCG
**
1116895 CCCATATGCTCATTTCATTGGTTGGCTTAG
129 CCCGCATGCTCATTTCATTGGTTGGCTTAG
1116925 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
1116952 CATTTGGAGT
Statistics
Matches: 261, Mismatches: 72, Indels: 23
0.73 0.20 0.06
Matches are distributed among these distances:
157 3 0.01
158 60 0.23
159 190 0.73
160 8 0.03
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.25
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCATGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCAGGATCGACA
GCACGCAAGGGGGATCGGGCCGATCCCTGACTTACGCATTATGCCTCTCCGGCCGGCTGAGCGCC
CGCATGCTCATTTCATTGGTTGGCTTAG
Found at i:1117111 original size:185 final size:183
Alignment explanation
Indices: 1116766--1117321 Score: 661
Period size: 185 Copynumber: 3.0 Consensus size: 183
1116756 TTTAACTTAG
*
1116766 GCATACGGAGTTCATTACT-AGTCTAAGATC-GAACCAGACCGAGGGTTGCGACAGTAGGATCGA
1 GCATACGGAGTTCATT-CTCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCTACAGTAGGATCGA
* * * * * * *
1116829 CAGCACGCATAGGGGGATCGGGCCGATCCCTGACTTATGCATTATGCCTCTCCGGCCGGTTGAGT
64 CAGCACGCA-GGGGGGATCGGGCCGATCCCAG-CTTACGCATTCTACCTCTTCGGCCGGTTGAGC
* * * *
1116894 GCCCATATGCTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
127 GCCCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
** * *
1116951 GCATTTGGAGTTCATTCTCAGTCTAAGATCAGATCAGACCGAGGGTTGCTACAGTAGGATTGACA
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGCTACAGTAGGATCGACA
* ** * *
1117016 GCACGTCAGGGGGGACCAAGCTGGTCCCCAGCTTACGCATTCTACCTCTTCGGCCGGTTGAGCGC
66 GCACG-CAGGGGGGATCGGGCCGAT-CCCAGCTTACGCATTCTACCTCTTCGGCCGGTTGAGCGC
* * *
1117081 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
129 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCAT-TCCATGTCTAA
* * * * **
1117136 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-TGGCAGCAGGATCGGT
1 GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGCT-ACAGTAGGATCGAC
* * * * * *
1117200 AGCATGCAGGAGGGATCGGGCCGATCCCAGGCTTGCGCATTCTACCTCTTCGGTCGGCTGAGCAC
65 AGCACGCAGGGGGGATCGGGCCGATCCCA-GCTTACGCATTCTACCTCTTCGGCCGGTTGAGCGC
* *
1117265 CCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
129 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1117320 GC
1 GC
1117322 CCTAGCCGGA
Statistics
Matches: 313, Mismatches: 50, Indels: 17
0.82 0.13 0.04
Matches are distributed among these distances:
183 7 0.02
184 95 0.30
185 201 0.64
186 10 0.03
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (183 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGGTTGCTACAGTAGGATCGACA
GCACGCAGGGGGGATCGGGCCGATCCCAGCTTACGCATTCTACCTCTTCGGCCGGTTGAGCGCCC
GTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
Found at i:1117140 original size:26 final size:26
Alignment explanation
Indices: 1117110--1117162 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1117100 GTTGACTTAG
*
1117110 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
1117136 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1117162 G
1 G
1117163 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1117366 original size:687 final size:682
Alignment explanation
Indices: 1115698--1117666 Score: 2631
Period size: 685 Copynumber: 2.9 Consensus size: 682
1115688 TCTCTCTGGT
* * * * *
1115698 CGGTTGAGCGCCCCCACGGTCG-TTCTGTGGGTTAACTTAGGCATACGGAGTTTATCCCCAGTCT
1 CGGTTGAGCGCCCGCACGCTCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCT
* * * * * *
1115762 AAGCATATGGAGTTCATTTCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGTAGGATCGA
65 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * *
1115827 CAGCAAGCAGGGGGGATCGGGCCGATCCCCGGCTTGCACCA-TCTGCCTCTCCGACCGGCTGAGC
130 CAGCATGCAGGGGGGATCGGGCCGATCCCAGGCTTGC-GCATTCTACCTCTTCGGCCGGCTGAGC
* * * *
1115891 ACCCGCACGCCCTTTTCGTGGGCTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAGCCCCAAC
194 ACCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAAC
* * *
1115956 CGGATCGAGGGTTGTGGTAGCGGGACCAGTAGCACGTAGAGGGGGA-TCAGATCGATCCCCGGCT
259 CGGATCGAGGGTTGTGGTAGCGGGACCAGCAGCACGTAGA-GGGGACTGA-ATCGAT-CCCGACT
*
1116020 TGGACATTATGCCTCTCCGATCGGCTCAGCGCCCGCACGCTCATTTCGTGGTTTAACTTAGGCAT
321 TGGACATTATGCCTCTCCGGTCGGCTCAGCG-CCGCACGCTCATTTCGTGGTTTAACTTAGGCAT
** * *
1116085 ATAGAGTTCATTACCAGTCTAAGATTGAACCAGACCAAGGGTTGCGATAGCAGGATCGACAGCAC
385 ACGGAGTTCATTACCAGTCTAAGATCGAACCAGACCGAGGGTTGCGATAGCAGGATCGACAGCAC
* * * * *
1116150 GCATAGGGGGACCGGGTCGGTCCCTGACTTGTGCATTTTGCCTCTCCGGCCGGTTGAGCGCCTGC
450 GCATAGGGGGATCGGGTCGATCCCTGACTTATGCATTATGCCTCTCCGGCCGGTTGAGCGCCCGC
*
1116215 ACGCT-AGTTTAATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATTTGGAGTTC
515 ACGCTCA-TTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATTTGGAGTTC
* ** *
1116279 ATTCTCAGTCTAAGATCAGATCGGACCGAGGGTTGCTGTAGTAGGATCGACAGCATGTCGGGGGA
579 ATTCTCAGTCTAAGATCAGATCAGACCGAGGGTTGCTACAGTAGGATCGACAGCACGTCGGGGGA
* * * *
1116344 TCGAGCTGGTCCCCGGCTTGCGCATTCTACCTCTTCGGC
644 CCAAGCTGGTCCCCAGCTTACGCATTCTACCTCTTCGGC
* * * ** **
1116383 CGGTTGAGCGTCCGCCCGCTCATTTCATGGGTTGACTTATTCATAAAGAGTTCATCCCCAGTCTA
1 CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * *
1116448 AGCATACGGAGTTCATTCCCAGTCTAAGATC-GTAGCGGACCTAGGGTTGCGGTAGCAGGATCGG
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCAGGATCGG
*
1116512 CAGCATGCAGGGGGGATCGGGCCGATCCCAGGCTTACGCATTCTACCTCTTCGGCCGGCTGAGCA
130 CAGCATGCAGGGGGGATCGGGCCGATCCCAGGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGCA
*
1116577 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAATC
195 CCCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACC
* *
1116642 GGATCGAGGGTTGTGGTAGCGGGACC-GACAGCACGTAGAGGAGGACTGAATTGATCTTCGACTT
260 GGATCGAGGGTTGTGGTAGCGGGACCAG-CAGCACGTAGAGG-GGACTGAATCGATC-CCGACTT
* * *
1116706 GGACATTATGCCTCTCCGGTTGGCTCAGCGACCGCATGCTCATTTCATGGTTTAACTTAGGCATA
322 GGACATTATGCCTCTCCGGTCGGCTCAGCG-CCGCACGCTCATTTCGTGGTTTAACTTAGGCATA
* * *
1116771 CGGAGTTCATTACTAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGTAGGATCGACAGCACG
386 CGGAGTTCATTACCAGTCTAAGATCGAACCAGACCGAGGGTTGCGATAGCAGGATCGACAGCACG
* * **
1116836 CATAGGGGGATCGGGCCGATCCCTGACTTATGCATTATGCCTCTCCGGCCGGTTGAGTGCCCATA
451 CATAGGGGGATCGGGTCGATCCCTGACTTATGCATTATGCCTCTCCGGCCGGTTGAGCGCCCGCA
* *
1116901 TGCTCATTTCATTGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATTTGGAGTTCAT
516 CGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATTTGGAGTTCAT
*
1116966 TCTCAGTCTAAGATCAGATCAGACCGAGGGTTGCTACAGTAGGATTGACAGCACGTCAGGGGGGA
581 TCTCAGTCTAAGATCAGATCAGACCGAGGGTTGCTACAGTAGGATCGACAGCACGTC--GGGGGA
1117031 CCAAGCTGGTCCCCAGCTTACGCATTCTACCTCTTCGGC
644 CCAAGCTGGTCCCCAGCTTACGCATTCTACCTCTTCGGC
1117070 CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
1 CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
* * * *
1117135 AGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGT
66 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* *
1117200 AGCATGCAGGAGGGATCGGGCCGATCCCAGGCTTGCGCATTCTACCTCTTCGGTCGGCTGAGCAC
131 AGCATGCAGGGGGGATCGGGCCGATCCCAGGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGCAC
* * *
1117265 CCGTACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCG
196 CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
* * *** *
1117330 GA-CTGAGGGTTGTGGTAGCGGGACCAGCAACACGTAGATGGGGACCGGGCCAATCCCTGACTTG
261 GATC-GAGGGTTGTGGTAGCGGGACCAGCAGCACGTAGA-GGGGACTGAATCGATCCC-GACTTG
* * * * * * * *
1117394 TG-CATTATGCCTCTTCGGTCGACTCAGTGCTCGTACGCTCGTTTCGTGGGTTGACTTATGCATA
323 -GACATTATGCCTCTCCGGTCGGCTCAGCGC-CGCACGCTCATTTCGTGGTTTAACTTAGGCATA
* * * * * * * *
1117458 CGAAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTACGGTAGCAGGATTGACAGCATG
386 CGGAGTTCATTACCAGTCTAAGATCGAACCAGACCGAGGGTTGCGATAGCAGGATCGACAGCACG
** * * ** * * * ** *
1117523 CAGGGGGGGATTGGGTTGATCCCCAACTTACGCATTCTACCTCTCTAGCCGGCTGAGCGCCCGCA
451 CATAGGGGGATCGGGTCGATCCCTGACTTATGCATTATGCCTCTCCGGCCGGTTGAGCGCCCGCA
* * * **
1117588 CGCTCGTTTCGTGGGTTGGCTTAGGCATATGGAGTTCATTCCATGTCTAAGCATACGGAGTTCAT
516 CGCTCATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATTTGGAGTTCAT
* *
1117653 TCCCAGCCTAAGAT
581 TCTCAGTCTAAGAT
1117667 TTTGAGCCAC
Statistics
Matches: 1121, Mismatches: 146, Indels: 32
0.86 0.11 0.02
Matches are distributed among these distances:
684 7 0.01
685 553 0.49
686 9 0.01
687 547 0.49
688 5 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (682 bp):
CGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTA
AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGC
AGCATGCAGGGGGGATCGGGCCGATCCCAGGCTTGCGCATTCTACCTCTTCGGCCGGCTGAGCAC
CCGCACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
GATCGAGGGTTGTGGTAGCGGGACCAGCAGCACGTAGAGGGGACTGAATCGATCCCGACTTGGAC
ATTATGCCTCTCCGGTCGGCTCAGCGCCGCACGCTCATTTCGTGGTTTAACTTAGGCATACGGAG
TTCATTACCAGTCTAAGATCGAACCAGACCGAGGGTTGCGATAGCAGGATCGACAGCACGCATAG
GGGGATCGGGTCGATCCCTGACTTATGCATTATGCCTCTCCGGCCGGTTGAGCGCCCGCACGCTC
ATTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATTTGGAGTTCATTCTCA
GTCTAAGATCAGATCAGACCGAGGGTTGCTACAGTAGGATCGACAGCACGTCGGGGGACCAAGCT
GGTCCCCAGCTTACGCATTCTACCTCTTCGGC
Found at i:1117532 original size:159 final size:158
Alignment explanation
Indices: 1117136--1117638 Score: 372
Period size: 159 Copynumber: 3.2 Consensus size: 158
1117126 CCCAGTCTAA
* * **
1117136 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATCGGT
1 GCATACGA-AGTTCATTCCCAGTCTAAGATCAAACCAGA-CGAGGGTTGTGGTAGCAGGATCGAC
* * * * * * *
1117200 AGCATGCA-GGAGGGATCGGGCCGATCCCAGGCTTGCGCATTCTACCTCTTCGGTCGGCTGAGCA
64 AGCATGCAGGGGGGGACCGGGCCAATCCCAGACTTGCGCATTATACCTCTTCGGTCGACTCAGCA
*
1117264 CCCGTACGCCCGTTTCATGGGTTGGCTTAG
129 CCCGTACGCCCGTTTCATGGGTTGACTTAG
* * ** * * * * *
1117294 GCATAGGGAGTTCATT-CCATGTCTAAGCCCTAGCCGGACTGAGGGTTGTGGTAGCGGGA-CCAG
1 GCATACGAAGTTCATTCCCA-GTCTAAGATCAAACCAGAC-GAGGGTTGTGGTAGCAGGATCGA-
* * * ** * * * *
1117357 CAACACGTAGATGGGGACCGGGCCAATCCCTGACTTGTGCATTATGCCTCTTCGGTCGACTCAGT
63 CAGCATGCAGGGGGGGACCGGGCCAATCCCAGACTTGCGCATTATACCTCTTCGGTCGACTCAGC
* * * * *
1117422 GCTCGTACGCTCGTTTCGTGGGTTGACTTAT
128 ACCCGTACGCCCGTTTCATGGGTTGACTTAG
** *
1117453 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGATCGAGGGTTACGGTAGCAGGATTGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGA-CGAGGGTTGTGGTAGCAGGATCGACA
** *** * * * * * *
1117518 GCATGCAGGGGGGGATTGGGTTGATCCCCA-ACTTACGCATTCTACCTC-TCTAGCCGGCTGAGC
65 GCATGCAGGGGGGGACCGGGCCAAT-CCCAGACTTGCGCATTATACCTCTTC-GGTCGACTCAGC
* * * * *
1117581 GCCCGCACGCTCGTTTCGTGGGTTGGCTTAG
128 ACCCGTACGCCCGTTTCATGGGTTGACTTAG
* *
1117612 GCATATGGAGTTCATT-CCATGTCTAAG
1 GCATACGAAGTTCATTCCCA-GTCTAAG
1117639 CATACGGAGT
Statistics
Matches: 261, Mismatches: 73, Indels: 21
0.74 0.21 0.06
Matches are distributed among these distances:
157 5 0.02
158 52 0.20
159 196 0.75
160 8 0.03
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.25
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAAACCAGACGAGGGTTGTGGTAGCAGGATCGACAG
CATGCAGGGGGGGACCGGGCCAATCCCAGACTTGCGCATTATACCTCTTCGGTCGACTCAGCACC
CGTACGCCCGTTTCATGGGTTGACTTAG
Found at i:1117663 original size:26 final size:26
Alignment explanation
Indices: 1117612--1117664 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1117602 GTTGGCTTAG
* *
1117612 GCATATGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCATGCCTAA
1117638 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCATT-CCATGCCTAA
1117664 G
1 G
1117665 ATTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGCCTAA
Found at i:1121840 original size:159 final size:157
Alignment explanation
Indices: 1121275--1121876 Score: 583
Period size: 159 Copynumber: 3.8 Consensus size: 157
1121265 NNNNAGATTG
* * * * *
1121275 GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGAGTGCTTAGCTGACCGGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCTGACCGGAG
* * * * * **
1121340 AGGTAGAATGTGCAAGCCGAGGACCAGCGCGATCCCCCT-TGCGTGCTGTCGATCCTGCTACCGC
66 AGGTAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTACCAT
* **
1121404 AACCCTCGGTCCGGTCTGATCTTAGAC-T
131 AACCCTC-GTCC-GACTGGGCTTAGACAT
* * * * * * * ** *
1121432 GGGAACGAACTTCCTATGCCTAAGTCAA-TCAATGAAATGAGCGTGCGGGCACTGAGCCAACTGG
1 -GGAATGAACTCCCTATGCCTAAGCCAACCCAA-GAAACGAGCGTGCGGGCGCTCAGCTGACCGG
* * * * * * *
1121496 AGAGGCATAATGCGCAAGCCG-GAGATCGACCCGATCCCCCTCTGTGTGCTGCCAGT-CTGACTG
64 AGAGGTAGAATGCGCAAGCCGAG-GATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTG-CTA
*
1121559 CCATAACCCTCGAT-CTAGCTAGGGCTTAGACAT
127 CCATAACCCTCG-TCCGA-CT-GGGCTTAGACAT
* * *
1121592 GGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAG
1 GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCTGACCGGAG
* *
1121657 AGGTAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGTTACCAT
66 AGGTAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTACCAT
1121722 AACCCTCAGTCCGACTGGGGCTTAGACAT
131 AACCCTC-GTCCGACT-GGGCTTAGACAT
* * * *
1121751 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG-TCGGCTGGA
1 GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCT-GACCGGA
* * * * * * *
1121815 GAGGTAGAATGCGCAAGCC-AGGGATCAGCTCGGTCTCCC-CTGTGTGCTATCGATCCTGCTAC
65 GAGGTAGAATGCGCAAGCCGA-GGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTAC
1121877 TGCAACCCTC
Statistics
Matches: 360, Mismatches: 69, Indels: 30
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.01
158 105 0.29
159 241 0.67
160 10 0.03
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCTGACCGGAG
AGGTAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTGCTACCAT
AACCCTCGTCCGACTGGGCTTAGACAT
Found at i:1121915 original size:317 final size:316
Alignment explanation
Indices: 1121269--1121919 Score: 726
Period size: 317 Copynumber: 2.1 Consensus size: 316
1121259 NNNNNNNNNN
* * *
1121269 AGATTGGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGAGTGCTTAGCTGA
1 AGATTGGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGAGCGCTCAGCTGA
* * *
1121334 CCGGAGAGGTAGAATGTGCAAGCCGAGGACCAGCGCGATCCCCCTTGCGTGCTGTCGATCCTGCT
66 CCAGAGAGGTAGAATGCGCAAGCCGAGGACCAGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCT
* * * * * * *
1121399 ACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAACGAACTTCCTATGCCTAAGTCAATCAA
131 ACCACAACCCTCAGTCCGGACTGAGCTTAGACTGGGAACGAACTCCCTATGCCTAAGCCAACCAA
* * * *
1121464 TGAAATGAGCGTGCGGGCACTGAGCCAACTGGAGAGGCATAATGCGCAAGCCGGAGATCGACCCG
196 CGAAACGAGCGTGCGGGCACTCAGCCAACTGGAGAGGCAGAATGCGCAAGCCGGAGATCGACCCG
*
1121529 ATCCCCCTCTGTGTGCTGCCAGTCTGACTGCCATAACCCTCGATCTAGCTAGGGCTT
261 ATCCCCCTCTGTGTGCTGCCAGTCTGACTGCCA-AACCCTCGATCTAGCTAGAGCTT
* * * *
1121586 AGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCAGGAAACGAGCGTGCGGGCGCTCAGCTG
1 AGA-TTGGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGAGCGCTCAGCTG
* * * * *
1121650 GCCAGAGAGGTAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGGTCCTG
65 ACCAGAGAGGTAGAATGCGCAAGCCGAGGACCAGCCCGATCCCCCT-TGCGTGCTGTCGATCCTG
* * * *
1121715 TTACCATAACCCTCAGTCC-GACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAA
129 CTACCACAACCCTCAGTCCGGACT-GAGCTTAGAC-TGGGAACGAACTCCCTATGCCTAAGCCAA
* * * * ** *
1121778 CCCACGAAACGGGCGTGCGGGCGCTCAGTCGGCTGGAGAGGTAGAATGCGCAAGCCAGG-GATC-
192 CCAACGAAACGAGCGTGCGGGCACTCAGCCAACTGGAGAGGCAGAATGCGCAAGCC-GGAGATCG
* * * ** * * *
1121841 AGCTCGGTCTCCC-CTGTGTGCTATC-GATCCTGCTACTG-C-AACCCTCGATCTGGTTAGATCT
256 A-CCCGATCCCCCTCTGTGTGCTGCCAG-T-CTG--ACTGCCAAACCCTCGATCTAGCTAGAGCT
1121902 T
316 T
1121903 AGATTGGGAATGAACTC
1 AGATTGGGAATGAACTC
1121920 TGTACGCTTA
Statistics
Matches: 276, Mismatches: 47, Indels: 22
0.80 0.14 0.06
Matches are distributed among these distances:
316 2 0.01
317 142 0.51
318 124 0.45
319 4 0.01
320 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.20
Consensus pattern (316 bp):
AGATTGGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAACGAGCGTACGAGCGCTCAGCTGA
CCAGAGAGGTAGAATGCGCAAGCCGAGGACCAGCCCGATCCCCCTTGCGTGCTGTCGATCCTGCT
ACCACAACCCTCAGTCCGGACTGAGCTTAGACTGGGAACGAACTCCCTATGCCTAAGCCAACCAA
CGAAACGAGCGTGCGGGCACTCAGCCAACTGGAGAGGCAGAATGCGCAAGCCGGAGATCGACCCG
ATCCCCCTCTGTGTGCTGCCAGTCTGACTGCCAAACCCTCGATCTAGCTAGAGCTT
Found at i:1123352 original size:26 final size:26
Alignment explanation
Indices: 1123301--1123353 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1123291 GGCTCAAACT
*
1123301 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1123327 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
1123353 C
1 C
1123354 CTAAGCTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1123680 original size:26 final size:26
Alignment explanation
Indices: 1123644--1123696 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1123634 CCGATTCGAT
1123644 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
1123670 CTTAGACTGGGGATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
1123696 C
1 C
1123697 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:1123891 original size:26 final size:26
Alignment explanation
Indices: 1123853--1123905 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1123843 TCGGTCCGAT
*
1123853 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1123879 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1123905 C
1 C
1123906 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1124681 original size:25 final size:24
Alignment explanation
Indices: 1124641--1124690 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
1124631 TCCGATCAGT
1124641 CTTAGCTGGGAAGAAC-TCGTATG
1 CTTAGCTGGGAAGAACATCGTATG
*
1124664 CTTAGACTGGGGATGAACATCGTATG
1 CTTAG-CT-GGGAAGAACATCGTATG
1124690 C
1 C
1124691 GTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 5 0.22
24 2 0.09
25 8 0.35
26 8 0.35
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (24 bp):
CTTAGCTGGGAAGAACATCGTATG
Found at i:1125396 original size:26 final size:26
Alignment explanation
Indices: 1125358--1125410 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1125348 GGATCAAACT
*
1125358 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
*
1125384 CTTAGAC-ATGGAATAAACTCCGTATG
1 CTTAGACTA-GGAATAAACTCCATATG
1125410 C
1 C
1125411 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:1126263 original size:26 final size:26
Alignment explanation
Indices: 1126219--1126271 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1126209 CCAGTCTAAT
*
1126219 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
1126245 CTTAGACTGGGGAA-AAACTCTGTATG
1 CTTAGACT-GGGAATAAACTCCGTATG
1126271 C
1 C
1126272 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:1126616 original size:26 final size:26
Alignment explanation
Indices: 1126587--1126639 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1126577 CTGGTCCGAT
1126587 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
*
1126613 CTTAGACATGGAATGAAGTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
1126639 C
1 C
1126640 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:1127080 original size:157 final size:159
Alignment explanation
Indices: 1126734--1127080 Score: 376
Period size: 157 Copynumber: 2.2 Consensus size: 159
1126724 TGGTTCAACC
* * * ** *
1126734 TGATCTTAGACTCGAAATAAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCT
1 TGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCT
* * * * * * *
1126799 GAGCCGACCGAAGAGGCATAATGCGCAAGCCGGGGATCGGCTCGATCCCTCTCTGCGTGCTACCG
66 CAGCCGACCGAAGAGGCAGAATGCGCAAGACGGGGATCAGCCCGATCCCTCCCTACGTGCTACCG
*
1126864 ATCCCGCTGACACAACCCTCGGTCCGGCT
131 ATCCCGCTGACACAACCCTCGATCCGGCT
* ** * ** ** *
1126893 GGGGCTTAGACAAGGAATGAACTCCCTATGCCTCAA-CCAACCCAC-AAACTTGCGTGTGAGCGC
1 TGATCTTAGACTAGGAATGAACTCTGTATGCCT-AAGCCAACCCACGAAACGAGCGTGCGAGCGC
* * *
1126956 TCAGCCGATCGGAGAGGCAGAATGCGCAAGACGGGGATCAGCCCGATCCC-CCCTACGTGCTGCC
65 TCAGCCGACCGAAGAGGCAGAATGCGCAAGACGGGGATCAGCCCGATCCCTCCCTACGTGCTACC
* ** * *
1127020 GATCCTGCTTTCGCAACCCTCGATCCGGTT
130 GATCCCGCTGACACAACCCTCGATCCGGCT
*
1127050 TGATCTTAGACTGGGAATGAACTCTGTATGC
1 TGATCTTAGACTAGGAATGAACTCTGTATGC
1127081 TTAGACTAGG
Statistics
Matches: 149, Mismatches: 38, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
157 59 0.40
158 57 0.38
159 31 0.21
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.20
Consensus pattern (159 bp):
TGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCT
CAGCCGACCGAAGAGGCAGAATGCGCAAGACGGGGATCAGCCCGATCCCTCCCTACGTGCTACCG
ATCCCGCTGACACAACCCTCGATCCGGCT
Found at i:1127095 original size:26 final size:26
Alignment explanation
Indices: 1127054--1127106 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
1127044 CCGGTTTGAT
1127054 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
1127080 CTTAGACTAGGG-ATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTTCGTATG
1127106 C
1 C
1127107 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:1128156 original size:26 final size:26
Alignment explanation
Indices: 1128120--1128172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1128110 CTAGTTCCAT
1128120 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
**
1128146 CTTAGACTGGGGTTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1128172 C
1 C
1128173 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1128908 original size:26 final size:26
Alignment explanation
Indices: 1128879--1128931 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1128869 CTAGTCCGAT
**
1128879 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
1128905 CTTAGACACGGAATGAACTCCGTATG
1 CTTAGACACGGAATGAACTCCGTATG
1128931 C
1 C
1128932 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACACGGAATGAACTCCGTATG
Found at i:1129108 original size:550 final size:547
Alignment explanation
Indices: 1127776--1129015 Score: 1583
Period size: 550 Copynumber: 2.3 Consensus size: 547
1127766 TGGCTCAAAC
* * *
1127776 TCTTACACTGAGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * *
1127841 CACGAAATGAGCGTGAGGGCGCTCAGCCGGCTAGAGAGGCGGAAATGC-AAAGCCGGGGATCGGC
66 CACGAAACGAGCGTGCGGGAGCTCAGCC-GATCGAGAGGC-AAAATGCGAAAGTCAGGGATCGGC
** *
1127905 CTAATCCCCCTCTACGTTCTGTCAGTCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACA
129 C-GGTCCCCCTCTACGTTCTGTCAGTCCCACTACCACAACCCTCG-TCCGACTGGGGCTTAGACA
* ** *
1127970 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATCTGGGTGCTCAGTCGACCGGA
192 TGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATCTAGGCACTCAGTCGACAGGA
* * * * * *
1128035 GAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCCTGCTATCGC
257 GAGGCAGAATGCACAAGCCGGAGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGC
* * * * *
1128100 AACCGTTAGTCTAGTTCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGTTGAACT
322 AACCCTCAGTCTAGTTCCATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTAGGGATGAACT
* * *
1128165 CCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGACGCTCTTCCGATCGGAGAGGCCGGTCG
387 CCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGACACTCTTCCGACCGGAGAGGCCGGTCG
* * * *
1128230 AAAAGGTGAATGCAAAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACTATCCTGCTGCTGG
452 AAAAGGAGAATGCAAAAGTCAGGGATCGACCCAGTCCCCCCTGCGTGCTACTATCCTGCTGCTGG
* * * * *
1128295 TCCTGCTGTCATAACCCTCTATCCGGTCTGA
517 TCCTACTGTCACAACCCTCGATCCAGTCCGA
* * *
1128326 TTTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACG
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * **
1128391 CACGAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAGAATGTGTAAGTCAGGGATCAACC
66 CACGAAACGAGCGTGCGGGAGCTCAGCCGATC-GAGAGGCAAAATGCGAAAGTCAGGGATC-GGC
* *
1128456 CGGTCCCCCTCTACGTTTTGTCAGTCCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACAT
129 CGGTCCCCCTCTACGTTCTGTCAGTCCCACTACCACAACCCTC-GTCCGACTGGGGCTTAGACAT
* *
1128521 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGC-AGGCACTCAGTCTGTCAGG
193 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCAT-CTAGGCACTCAGTC-GACAGG
*
1128585 -GAGGCAGAATGCACAAGCCGGAGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCCG
256 AGAGGCAGAATGCACAAGCCGGAGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCG
* * *
1128649 CAACCCTCGGTCT-GATTCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGATTAGGGATGAA
321 CAACCCTCAGTCTAG-TTCCATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTAGGGATGAA
* * * *
1128713 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCTTCTGACCGGAGAGGTCGGT
385 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGACACTCTTCCGACCGGAGAGGCCGGT
* * * * *
1128778 CGGAGAGGCAGAATGCAAAATTCAGGGATCGACCCAGTCCCCCTTGTGTGCTGA-TGATCCTGCT
450 CGAAAAGG-AGAATGCAAAAGTCAGGGATCGACCCAGTCCCCCCTGCGTGCT-ACT-ATCCTGCT
* * * * *
1128842 GTTGGTCCTACTGTCGCAACGCTCGGTCTAGTCCGA
512 GCTGGTCCTACTGTCACAACCCTCGATCCAGTCCGA
*
1128878 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
1128943 CATGGAACGAGCGTTCGGGAGCTCAGCCTG-TCGAGAGGCAAAATGCGCAAGTCAGGGACCGGCT
66 CACGAAACGAGCGTGCGGGAGCTCAGCC-GATCGAGAGGCAAAATGCGAAAGTCAGGGATCGGC-
1129007 CGGTCCCCC
129 CGGTCCCCC
1129016 CTGCGTGCTG
Statistics
Matches: 589, Mismatches: 89, Indels: 23
0.84 0.13 0.03
Matches are distributed among these distances:
549 6 0.01
550 384 0.65
551 78 0.13
552 120 0.20
553 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (547 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCGGGAGCTCAGCCGATCGAGAGGCAAAATGCGAAAGTCAGGGATCGGCCG
GTCCCCCTCTACGTTCTGTCAGTCCCACTACCACAACCCTCGTCCGACTGGGGCTTAGACATGGA
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATCTAGGCACTCAGTCGACAGGAGAGG
CAGAATGCACAAGCCGGAGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTACCGCAACC
CTCAGTCTAGTTCCATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTAGGGATGAACTCCGT
ATGCCTAAGTCAACCCATGAAACGAGCATGCGGACACTCTTCCGACCGGAGAGGCCGGTCGAAAA
GGAGAATGCAAAAGTCAGGGATCGACCCAGTCCCCCCTGCGTGCTACTATCCTGCTGCTGGTCCT
ACTGTCACAACCCTCGATCCAGTCCGA
Found at i:1129183 original size:550 final size:550
Alignment explanation
Indices: 1127776--1129207 Score: 1445
Period size: 550 Copynumber: 2.6 Consensus size: 550
1127766 TGGCTCAAAC
* * * *
1127776 TCTTACACTGAGAATGAACTCCATATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACC
* * * ** * * * * * **
1127841 CACGAAATGAGCGTG-AGGGCGCTCAGCCGGCTAGAGAGGCGGAAATGC-AAAGCCGGGGATCGG
66 CACGAAACGAGCGTGCA-GGAGCTCAGCCGACCGGAGAGGC-AAAATGCGCAAGTCAGGGACCAA
*** * ** * * * *
1127904 CCTAATCCCCCTCTACGTTCTGTCAGTCCCACTGCCACAACCCTC-GATCCGACTGGGGCTTAGA
129 CCCGGTCCCCCTCTACGTGCTGTCAGTCCCACCACCACAACCATCAG-TCAGACTCGAGCTTAGA
* * * * ** * *
1127968 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCAT-CTGGGTGCTCAGTC-GAC
193 CATGGAACGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGC-AGGCACTCAGCCAGTC
* * * * * * * *
1128031 CGGAGAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCCCCCCTGCGTGCTGCCGATCCTGCTA
257 AGG-GAGGCAGAATGCACAAGCCGGAGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCTG
* * * * * *
1128096 TCGCAACCGTTAGTCTAGTTCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGTTG
321 CCGCAACCCTCAGTCTAGTTCCATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTAGGGATG
* * *
1128161 AACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGACGCTCTTCCGATCGGAGAGGCCG
386 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGACACTCTTCCGACCGGAGAGGCCG
* * * *
1128226 GTCGAAAAGGTGAATGCAAAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTACTATCCTGCTG
451 GTCGAAAAGGAGAATGCAAAAGTCAGGGATCGACCCAGTCCCCCCTGCGTGCTACTATCCTGCTG
* * * * *
1128291 CTGGTCCTGCTGTCATAACCCTCTATCCGGTCTGA
516 CTGGTCCTACTGTCACAACCCTCGATCCAGTCCGA
* * * *
1128326 TTTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTTTGCCTAAGCCAACG
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
1128391 CACGAAACGAGCGTGCAGGTGCTCAGCCGACCGGAGAGGCAGAATGTGTAAGTCAGGGATCAACC
66 CACGAAACGAGCGTGCAGGAGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGTCAGGGACCAACC
** * * * * * *
1128456 CGGTCCCCCTCTACGTTTTGTCAGTCCCGCTACCACAACCCTCAGTCCGACTGGGGCTTAGACAT
131 CGGTCCCCCTCTACGTGCTGTCAGTCCCACCACCACAACCATCAGTCAGACTCGAGCTTAGACAT
* * * *
1128521 GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACTCAGTCTGTCAGGG
196 GGAACGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGTCAGGG
*
1128586 AGGCAGAATGCACAAGCCGGAGATCGGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTGCCGCA
261 AGGCAGAATGCACAAGCCGGAGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCTGCCGCA
* * *
1128651 ACCCTCGGTCT-GATTCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGATTAGGGATGAACT
326 ACCCTCAGTCTAG-TTCCATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTAGGGATGAACT
* * * *
1128715 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCTTCTGACCGGAGAGGTCGGTCG
390 CCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGACACTCTTCCGACCGGAGAGGCCGGTCG
* * * * * *
1128780 GAGAGGCAGAATGCAAAATTCAGGGATCGACCCAGTCCCCCTTGTGTGCTGA-TGATCCTGCTGT
455 AAAAGG-AGAATGCAAAAGTCAGGGATCGACCCAGTCCCCCCTGCGTGCT-ACT-ATCCTGCTGC
* * * *
1128844 TGGTCCTACTGTCGCAACGCTCGGTCTAGTCCGA
517 TGGTCCTACTGTCACAACCCTCGATCCAGTCCGA
1128878 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * **
1128943 CATGGAACGAGCGTTCGGGAGCTCAGCCTG-TC-GAGAGGCAAAATGCGCAAGTCAGGGACCGGC
66 CACGAAACGAGCGTGCAGGAGCTCAGCC-GACCGGAGAGGCAAAATGCGCAAGTCAGGGACCAAC
* * * * * * *
1129006 TCGGTCCCCC-CTGCGTGCTGTC-GATCCTACCACCATAACCATCGGTTCAGTC-CGATCTTAGA
130 CCGGTCCCCCTCTACGTGCTGTCAG-TCCCACCACCACAACCATCAG-TCAGACTCGAGCTTAGA
* * * * * * ** *
1129068 C-TAGGAACGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTTCGGGCGTTGAGCCAGTC
193 CAT-GGAACGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGTC
* * * * ** * *
1129132 -GGAGAGGCATATTGC-CAAGCCGGGGGTCGGCCCGATCCCCTTTTACGTGCTGCCGGTCCCGCT
257 AGG-GAGGCAGAATGCACAAGCCGGAGATCGGCCCGATCCCC-CCTACGTGCTGCCGATCCTGCT
*
1129195 GCCACAACCCTCA
320 GCCGCAACCCTCA
1129208 ATCCAGCTGG
Statistics
Matches: 740, Mismatches: 127, Indels: 30
0.82 0.14 0.03
Matches are distributed among these distances:
549 32 0.04
550 505 0.68
551 82 0.11
552 120 0.16
553 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (550 bp):
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAACGAGCGTGCAGGAGCTCAGCCGACCGGAGAGGCAAAATGCGCAAGTCAGGGACCAACC
CGGTCCCCCTCTACGTGCTGTCAGTCCCACCACCACAACCATCAGTCAGACTCGAGCTTAGACAT
GGAACGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGTCAGGG
AGGCAGAATGCACAAGCCGGAGATCGGCCCGATCCCCCCTACGTGCTGCCGATCCTGCTGCCGCA
ACCCTCAGTCTAGTTCCATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTAGGGATGAACTC
CGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGACACTCTTCCGACCGGAGAGGCCGGTCGA
AAAGGAGAATGCAAAAGTCAGGGATCGACCCAGTCCCCCCTGCGTGCTACTATCCTGCTGCTGGT
CCTACTGTCACAACCCTCGATCCAGTCCGA
Found at i:1129382 original size:158 final size:157
Alignment explanation
Indices: 1128905--1129434 Score: 426
Period size: 158 Copynumber: 3.4 Consensus size: 157
1128895 ACTCCGTATG
* * * * * *
1128905 CTTAGACACGGAATGAACTCCGTATGCCTAAGCCAACCCATGGAAC-GAGCGTTCGGGAGCTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGTGTGCGGGCGCTCAG
* * * *
1128969 CCTGTC-GAGAGGCAAAATGCGCAAGTCAGGGACCGGCTCGGTCCCCCCTGCGTGCTGTCGATCC
65 CCAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCTCGAT-CCCCCTGCGTGCTGTCGATCC
** * * * *
1129033 TACCACCATAACCATCGGTTCAGTCCGAT
129 TACTGCCACAACCCTCGATCCAGTCCGAT
* * * * * *
1129062 CTTAGACTAGGAACGAACTTCGTATGCCTAAGTCAACCCACGAAAC-GAGTGTTCGGGCGTTGAG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGTGTGCGGGCGCTCAG
* * * * * * * * *
1129126 CCAGTCGGAGAGGCATATTGC-CAAGCCGGGGGTCGGCCCGATCCCCTTTTACGTGCTGCCGGTC
65 CCAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCTCGATCCCC--CTGCGTGCTGTCGATC
** * * **
1129190 CCGCTGCCACAACCCTCAATCCAG-CTGGGG
128 CTACTGCCACAACCCTCGATCCAGTC-CGAT
*
1129220 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAG-GTGTGCGGGCGCTCAG
1 CTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGTGTGCGGGCGCTCAG
* * * * * * *
1129284 CCGGCCGGAGAGGCAGAATACGTAAGCCAAGGATCGGCTCGATCCACCCTGCGTGCTGTCGATTC
65 CCAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCTCGATCC-CCCTGCGTGCTGTCGATCC
* * *
1129349 TACTGTCGCAACCCTCGATCCGGTCCGAT
129 TACTGCCACAACCCTCGATCCAGTCCGAT
* * * * * * * *
1129378 CTTAGACTGCGGATGAACTTCATTTCCCTAAGTCAACCCATGAAACA-AGCGTGCGGG
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGTGTGCGGG
1129435 TGCTAAGCTG
Statistics
Matches: 287, Mismatches: 74, Indels: 23
0.75 0.19 0.06
Matches are distributed among these distances:
156 4 0.01
157 76 0.26
158 184 0.64
159 21 0.07
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAGAGTGTGCGGGCGCTCAGC
CAGTCGGAGAGGCAAAATGCGCAAGCCAGGGATCGGCTCGATCCCCCTGCGTGCTGTCGATCCTA
CTGCCACAACCCTCGATCCAGTCCGAT
Found at i:1129462 original size:13 final size:13
Alignment explanation
Indices: 1129444--1129468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1129434 GTGCTAAGCT
1129444 GATCGGAGAGGCC
1 GATCGGAGAGGCC
1129457 GATCGGAGAGGC
1 GATCGGAGAGGC
1129469 ATAATGCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.20, G:0.48, T:0.08
Consensus pattern (13 bp):
GATCGGAGAGGCC
Found at i:1129769 original size:26 final size:26
Alignment explanation
Indices: 1129732--1129784 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1129722 CCAGTCTGAT
* *
1129732 CTTAGACTTGGAACGAACTCCGTATG
1 CTTAGACATGGAACGAACTCCATATG
*
1129758 CTTAGACATGGAATGAACTCCATATG
1 CTTAGACATGGAACGAACTCCATATG
1129784 C
1 C
1129785 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAACGAACTCCATATG
Found at i:1130185 original size:159 final size:158
Alignment explanation
Indices: 1129758--1130259 Score: 447
Period size: 158 Copynumber: 3.2 Consensus size: 158
1129748 ACTCCGTATG
* * ** * *
1129758 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAATGGGCACGTGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
* * ** * * ** **
1129823 CGGCCGGAGAGGCAAAATACGCAAATCGGGGACCGACTCGGTCCCCCCTACGTGCTTTCGGTCTT
66 CGGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACTCAGTCCCCCCTACGTGCTGCCGGTCCC
** *
1129888 GCTGCCACAACCCTCGATCCGGTTTGAT
131 GCTGCCACAACCCTCGATCCGACTGGAT
* * * * ** * *
1129916 CTTAGAC-TAGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGTTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAG
* * * * * *
1129980 CCAGCCAGAAAGGCATAATGCGTAAGCCGGGGATC-AGCT-TGATCCCCCTTTACGTGCTGCCGG
65 CCGGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CTCAG-TCCCCC-CTACGTGCTGCCGG
* * *
1130043 TCCCGCTGTCACAACCCTTGATCCGACTGGGT
127 TCCCGCTGCCACAACCCTCGATCCGACTGGAT
* * *
1130075 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGAGCTCAGT
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
* * * * ** * **
1130140 CGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGACTCAGTCCCCCATGCGTGCTATCGATCTT
66 CGGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACTCAGTCCCCCCTACGTGCTGCCGGTCCC
* * * *
1130205 GCTGCCGCAACCCTCGGTCTAGTCT-GAT
131 GCTGCCACAACCCTCGATC-CGACTGGAT
1130233 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
1130260 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 66, Indels: 18
0.76 0.19 0.05
Matches are distributed among these distances:
157 4 0.01
158 134 0.50
159 128 0.48
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGGGCGTGCGGGCGCTCAGC
CGGCCAGAGAGGCAAAATGCGCAAGCCGGGGATCGACTCAGTCCCCCCTACGTGCTGCCGGTCCC
GCTGCCACAACCCTCGATCCGACTGGAT
Found at i:1130269 original size:26 final size:26
Alignment explanation
Indices: 1130233--1130285 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1130223 CTAGTCTGAT
1130233 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
1130259 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1130285 C
1 C
1130286 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1130993 original size:26 final size:26
Alignment explanation
Indices: 1130955--1131007 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1130945 GGCTCAAAAT
*
1130955 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1130981 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1131007 C
1 C
1131008 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1132118 original size:159 final size:156
Alignment explanation
Indices: 1131702--1132197 Score: 435
Period size: 158 Copynumber: 3.1 Consensus size: 156
1131692 AACTCCATAT
* * * * *
1131702 GCTTATACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * ** * ** * * * *
1131767 TCGACTGAAGAGGCAGAATGTGCAAGCCAAGTACCGGACCGATCCCCCACGCATGCTGTCGATCT
66 TCGACTGAAGAGGCTGAATGCGCAAGCTGAGGATTGGCCCG-TCCCCC-TGCATGCTGCCGATCC
***
1131832 TGCTGTTGCAACCCTCGGTCCAGTCCGA
129 TGCTGCCACAACCCTCGGTCCAGTCCGA
* * * * *
1131860 TCTTAGAC-TGGTAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
* ** * *
1131924 GTCGACCGGGGAGGCAT-AATGCGTAAG-TCGAGGATTGGCCCAGTCCCCCTTTGCTTGCTGCCG
65 GTCGACTGAAGAGGC-TGAATGCGCAAGCT-GAGGATTGGCCC-GTCCCCC--TGCATGCTGCCG
* * * * *
1131987 GTCCCGCTGCCATAACCCTCGGTCCAG-CTGGG
125 ATCCTGCTGCCACAACCCTCGGTCCAGTC-CGA
* * *
1132019 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * * *
1132084 CCGACTGAAGAGGCTGAATGCGCAAGCTGGGGATTGGCCGGGTCCCTCCTGCGTGCTGCTGATCC
66 TCGACTGAAGAGGCTGAATGCGCAAGCTGAGGATTGGCC-CGTCCC-CCTGCATGCTGCCGATCC
**
1132149 TGCTGCCACAACCCTCGGTCTGGTCCGA
129 TGCTGCCACAACCCTCGGTCCAGTCCGA
* *
1132177 TCTTAGAC-TGGGAATAAACTC
1 GCTTAGACAT-GGAATGAACTC
1132198 TGTATGCTTC
Statistics
Matches: 264, Mismatches: 61, Indels: 26
0.75 0.17 0.07
Matches are distributed among these distances:
157 4 0.02
158 135 0.51
159 119 0.45
160 6 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
TCGACTGAAGAGGCTGAATGCGCAAGCTGAGGATTGGCCCGTCCCCCTGCATGCTGCCGATCCTG
CTGCCACAACCCTCGGTCCAGTCCGA
Found at i:1132938 original size:26 final size:26
Alignment explanation
Indices: 1132900--1132952 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1132890 GGCTCAAAAT
*
1132900 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1132926 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1132952 C
1 C
1132953 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1133659 original size:26 final size:26
Alignment explanation
Indices: 1133621--1133673 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1133611 GTGGTCCGAT
1133621 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1133647 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
1133673 C
1 C
1133674 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1133994 original size:159 final size:158
Alignment explanation
Indices: 1133646--1134148 Score: 453
Period size: 158 Copynumber: 3.2 Consensus size: 158
1133636 AACTCCATAT
* * *
1133646 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * * *
1133711 TCGGCTGAAGAGGCAGAATGCGCAAGCCAAGTACCGGACCGATCCCCCATGCATGCTGTCGATCC
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAAGGACCGGACCGATCCCCCATGCATGCTGTCGATCC
* ***
1133776 TGCTGTTGCAACCCTCGGTCCAGTCCGA
131 CGCTGCCACAACCCTCGGTCCAGTCCGA
* * * * *
1133804 TCTTAGAC-TGGTAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACATGG-AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCA
** * * * * ** * * * *
1133868 GCCGACCGGGGAGGCATAATGCGTAAGTCGAGGATTGG-CCCAGTCCCCCTTTGCTTGCTGTCGG
65 GCCGACCGAAGAGGCAGAATGCGCAAGCCAAGGACCGGACCGA-TCCCCC-ATGCATGCTGTCGA
* *
1133932 TCCCGCTGCCACAACCCTCGGTCCAG-CTGGG
128 TCCCGCTGCCACAACCCTCGGTCCAGTC-CGA
* * *
1133963 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
* * *** ** * *
1134028 CCGACTGAAGAGGCTGAATGCGCAAGCTGGGGATTGG-CCGGGTCCCTCC-TGCGTGCTG-CTGA
66 CCGACCGAAGAGGCAGAATGCGCAAGCCAAGGACCGGACC-GATCCC-CCATGCATGCTGTC-GA
* **
1134090 TCCTGCTGCCACAACCCTCGGTCTGGTCCGA
128 TCCCGCTGCCACAACCCTCGGTCCAGTCCGA
* * *
1134121 TCTTAGAC-TGGGAATAAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
1134149 TTCGACTGGG
Statistics
Matches: 275, Mismatches: 60, Indels: 20
0.77 0.17 0.06
Matches are distributed among these distances:
157 8 0.03
158 140 0.51
159 122 0.44
160 5 0.02
ACGTcount: A:0.22, C:0.30, G:0.28, T:0.20
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAG
CCGACCGAAGAGGCAGAATGCGCAAGCCAAGGACCGGACCGATCCCCCATGCATGCTGTCGATCC
CGCTGCCACAACCCTCGGTCCAGTCCGA
Found at i:1139924 original size:18 final size:18
Alignment explanation
Indices: 1139897--1139942 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
1139887 TCCCTGGATG
*
1139897 GGTGCGCCAGGCACATCA
1 GGTGCACCAGGCACATCA
1139915 GGTGCACCAGGCACATCA
1 GGTGCACCAGGCACATCA
* *
1139933 AGCGCACCAG
1 GGTGCACCAG
1139943 CAGGCGAGCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.26, C:0.35, G:0.30, T:0.09
Consensus pattern (18 bp):
GGTGCACCAGGCACATCA
Found at i:1141576 original size:26 final size:26
Alignment explanation
Indices: 1141536--1141587 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1141526 CGGTCTGATT
1141536 TTAGATTGGGAATGAACTCCATATGC
1 TTAGATTGGGAATGAACTCCATATGC
*
1141562 TTAGACTTGGG-ATGAACTCCGTATGC
1 TTAGA-TTGGGAATGAACTCCATATGC
1141588 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGATTGGGAATGAACTCCATATGC
Found at i:1141684 original size:368 final size:366
Alignment explanation
Indices: 1141006--1141842 Score: 1104
Period size: 368 Copynumber: 2.3 Consensus size: 366
1140996 CTATGTCCAG
* * * *
1141006 CTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGTGGGCG
1 CTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCG
* * * * ** *
1141071 CTCAACCGGCCAGAGAGGTAGAATACGCAATCCGA-GATCGGCTCGATCCCCCCTACGTGCTACT
66 CTCAACCGGTCAGAGAGGTAAAATACACAAGCCGAGGATCAACCCGATCCCCCCTACGTGCTACT
**
1141135 GATCCTGCTGTCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAAAGAACTCTGTATGCTTAG
131 GATCCTGCTGTCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAAAGAACTCCATATGCTTAG
* * * *
1141200 ACTAGGGATTACTTCGTATGCCTAAGTCAACTTACAAAATGAGCGTACGGGCGCTCGCCAGCCGG
196 ACTAGGGATAACTCCGTATGCCTAAGTCAACTTACAAAACGAGCGTACGGGAGCTCGCCAGCCGG
*
1141265 AGAGGCCGATCGGAGAGGCATAATGCGCAAGCCGGAGATCAGCCAGATCCCCCTCTGCATGCTAC
261 AGAGGCCGATCGGAGAGGCATAATGCGCAAGCCGGAGATCAGCCAGATCCCCCTCTGCACGCTAC
* * *
1141330 CGATCTCGCTGCCGATCCTGCTGCCATAACCCTCGGTCTGG
326 CGATCTCGCTGCCGATCCTACTGCCATAACCCTCGGTCCGA
* * *
1141371 TTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTG
1 CTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCG
* * ** * * *
1141436 CTCAGCCGGTC-GAAGAGGCAAAATGTACAAGCCGAGGATCAACCCGATCTCCCCTGCGTGCT-G
66 CTCAACCGGTCAG-AGAGGTAAAATACACAAGCCGAGGATCAACCCGATCCCCCCTACGTGCTAC
* * * *
1141499 TCGATCCTGCTGTCGTAACCCTTGGTCCGGTCTGATTTTAGATTGGGAATGAACTCCATATGCTT
130 T-GATCCTGCTGTCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAAAGAACTCCATATGCTT
* * * *
1141564 AGACTTGGGATGAACTCCGTATGCCTAAGTCAACTTACGAAACGAGCGTACGGGAGCTCAGTCGG
194 AGACTAGGGAT-AACTCCGTATGCCTAAGTCAACTTACAAAACGAGCGTACGGGAGCTC-GCCAG
* * * * * *
1141629 TCGGAGAGGTCGATCGGAGAGGCATAATGTGCAAGCCGGGGATCAGCCCGATCCCCCTCTGCGCG
257 CCGGAGAGGCCGATCGGAGAGGCATAATGCGCAAGCCGGAGATCAGCCAGATCCCCCTCTGCACG
* * * *
1141694 CTGCCGATCTCGCTGCCGGTCCTATTGCCATAACCCTCTGTCCGA
322 CTACCGATCTCGCTGCCGATCCTACTGCCATAACCCTCGGTCCGA
* ** * * *
1141739 CTGGGGCTTAGATGTGGAATGAACTCTGTATGCCTAAGCTAACCCATGAAATGAACGTGCGGGCG
1 CTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCG
* *
1141804 CTCAACCGATCAGAGAGGTAAAATACAAAAGCCGAGGAT
66 CTCAACCGGTCAGAGAGGTAAAATACACAAGCCGAGGAT
1141843 TGGCCGAGTC
Statistics
Matches: 402, Mismatches: 64, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
364 1 0.00
365 84 0.21
366 88 0.22
367 42 0.10
368 186 0.46
369 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (366 bp):
CTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCG
CTCAACCGGTCAGAGAGGTAAAATACACAAGCCGAGGATCAACCCGATCCCCCCTACGTGCTACT
GATCCTGCTGTCGCAACCCTTGGTCCGGTCTGATCTTAGACTGGGAAAGAACTCCATATGCTTAG
ACTAGGGATAACTCCGTATGCCTAAGTCAACTTACAAAACGAGCGTACGGGAGCTCGCCAGCCGG
AGAGGCCGATCGGAGAGGCATAATGCGCAAGCCGGAGATCAGCCAGATCCCCCTCTGCACGCTAC
CGATCTCGCTGCCGATCCTACTGCCATAACCCTCGGTCCGA
Found at i:1142282 original size:26 final size:26
Alignment explanation
Indices: 1142244--1142296 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1142234 CCGATCTGAT
1142244 CTTAGACCAGGAATGAACTCCATATG
1 CTTAGACCAGGAATGAACTCCATATG
*
1142270 CTTAGA-CATGGAATGAACTCCGTATG
1 CTTAGACCA-GGAATGAACTCCATATG
1142296 C
1 C
1142297 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCATATG
Found at i:1142569 original size:512 final size:501
Alignment explanation
Indices: 1141884--1142855 Score: 1155
Period size: 512 Copynumber: 1.9 Consensus size: 501
1141874 CTGCTGCTGG
* * * *
1141884 TCCTGCTACCTCAACCATCGGTCCGATCCTATCTTAGACTAGGAATGAACTGTGTATGCCTAAGT
1 TCCTGCTACCCCAACCATCGATCCGATCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGT
* * ** * * * *
1141949 CAACCTAAGAAATGAGCGTGCGGACTCTGAGCCAGCTGGAGAGGCATAATGCACAAGCCGGGGAT
66 CAACCCAAAAAACAAGCGTGCGGACGCTGAGCCAACCGGAGAGGCATAATGCACAAGCCGAGGAT
* * * * * * ** *
1142014 CGGCCCAGTCCCTCTCTATGTGCTACCGATCCTGTTGCCACAACCGTTGATCTGGCTAGGGCTTA
131 CGGCCCAGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGATAAGGCCAGGGCTTA
1142079 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGC-GAGCACTCAG-CAG
196 GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAG-GCACTCAGTC-G
* * * *
1142142 ATC-GAGAGGC-GAAATGCATAAGCCGGGGATCAACCCGGTCCCCCCTGCGTGCTGTCGATCCTG
259 ACCGGAAAGGCAG-AATGCACAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGA---T-
* *
1142205 CTGCTGGTCCTGCTGTCGTAACCCTCGGTCCGATCTGATCTTAGACCAGGAATGAACTCCATATG
319 C--C---TACTG-T-T-GTAACCCTCGGTCCGATCCGATCTTAGACCAGGAATGAACTCCATATG
*
1142270 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
376 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTTAG
* * *
1142334 CCGGCCGGAGAGGCAGAATGCAGAAGACGGGGATCGATCCTGTCCCCCCTACGTGCTGTCGA
440 CCGACCAGAGAGACAGAATGCAGAAGACGGGGATCGATCCTGTCCCCCCTACGTGCTGTCGA
* * *
1142396 TCCTGCTACCCCAACCCTCGATTCGATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGT
1 TCCTGCTACCCCAACCATCGATCCGATCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGT
* ** *
1142461 CAACCCAAAAAACAAGCGTGCGGGCGCTGAGCCAACCGGAGAGGCATAATGTGCAAGTCGAGGAT
66 CAACCCAAAAAACAAGCGTGCGGACGCTGAGCCAACCGGAGAGGCATAATGCACAAGCCGAGGAT
* * * * * *
1142526 TGGCCCGGTCCCCCTCTACGTGCTGCCGGT-CTCGCTACCACAACCCTCGGTAAGGCCGGGGCTT
131 CGGCCCAGTCCCCCTCTACGTGCTACCGATCCT-GCTACCACAACCCTCGATAAGGCCAGGGCTT
* * * * *
1142590 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAACGGGCGTGCAGGCGCTCAGTCGA
195 AGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAGTCGA
* * ** *
1142655 CCGGAAAGGCAGAATGCGCAAGCTGGGGATCAGTCCGATCCCCCTTGCGTGCTGTCGATCCTACT
260 CCGGAAAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTACT
* * * * *** * *
1142720 GTTGTAACCTTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGAT
325 GTTGTAACCCTCGGTCCGATCCGATCTTAGACCAGGAATGAACTCCATATGCTTAGACTGGGAAT
* *
1142785 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTTAGCCGACCAGAGAGACA
390 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTTAGCCGACCAGAGAGACA
*
1142850 GGATGC
455 GAATGC
1142856 GCAAGCCGAG
Statistics
Matches: 388, Mismatches: 66, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
500 1 0.00
501 114 0.29
502 1 0.00
503 1 0.00
504 4 0.01
507 1 0.00
509 1 0.00
510 1 0.00
511 2 0.01
512 214 0.55
513 47 0.12
514 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (501 bp):
TCCTGCTACCCCAACCATCGATCCGATCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGT
CAACCCAAAAAACAAGCGTGCGGACGCTGAGCCAACCGGAGAGGCATAATGCACAAGCCGAGGAT
CGGCCCAGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGATAAGGCCAGGGCTTA
GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCAGGCACTCAGTCGAC
CGGAAAGGCAGAATGCACAAGCCGGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTACTG
TTGTAACCCTCGGTCCGATCCGATCTTAGACCAGGAATGAACTCCATATGCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGAGCGCTTAGCCGACCAGAGAGACAG
AATGCAGAAGACGGGGATCGATCCTGTCCCCCCTACGTGCTGTCGA
Found at i:1142676 original size:159 final size:158
Alignment explanation
Indices: 1142269--1142676 Score: 437
Period size: 159 Copynumber: 2.6 Consensus size: 158
1142259 AACTCCATAT
* *
1142269 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* * * * *
1142334 CCGGCCGGAGAGGCAGAATGCAG-AAGACGGGGATCGATCCTGTCCCCCCTACGTGCTGTCGATC
66 CCGACCGGAGAGGCAGAATGC-GCAAGACGAGGATCGACCCGGTCCCCCCTACGTGCTGCCGATC
* ** *
1142398 CTGCTACCCCAACCCTCGATTCGATCCAA
130 CTGCTACCACAACCCTCGATAAGAGCCAA
* * * * * *
1142427 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCAAAAAACAAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
1142491 GCCAACCGGAGAGGCATAATGTGCAAGTCGAGGATTGGCCCGGTCCCCCTCTACGTGCTGCCGGT
65 GCCGACCGGAGAGGCAGAATGCGCAAGACGAGGATCGACCCGGTCCCCC-CTACGTGCTGCCGAT
* **
1142556 -CTCGCTACCACAACCCTCGGTAAG-GCCGGG
129 CCT-GCTACCACAACCCTCGATAAGAGCC-AA
* * * * *
1142586 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGGAACGGGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
* *
1142651 TCGACCGGAAAGGCAGAATGCGCAAG
66 CCGACCGGAGAGGCAGAATGCGCAAG
1142677 CTGGGGATCA
Statistics
Matches: 202, Mismatches: 42, Indels: 11
0.79 0.16 0.04
Matches are distributed among these distances:
157 2 0.01
158 96 0.48
159 103 0.51
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.28, T:0.17
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGAATGCGCAAGACGAGGATCGACCCGGTCCCCCCTACGTGCTGCCGATCC
TGCTACCACAACCCTCGATAAGAGCCAA
Found at i:1142774 original size:26 final size:26
Alignment explanation
Indices: 1142745--1142797 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1142735 CTGGTCCGAT
*
1142745 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1142771 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1142797 C
1 C
1142798 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1144007 original size:26 final size:26
Alignment explanation
Indices: 1143969--1144021 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1143959 CCAGTCTGAT
1143969 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
1143995 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
1144021 C
1 C
1144022 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:1144497 original size:159 final size:155
Alignment explanation
Indices: 1144192--1144697 Score: 471
Period size: 159 Copynumber: 3.2 Consensus size: 155
1144182 ACTCCGTATG
*
1144192 CTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGTACGGGCACT
1 CTTAGATA-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGT--G--CGGGCACT
* * *
1144257 CAATCGATCGGAGAGGCAGAATGCGTAAGCC-GAAGATCGGCCAGGTCCCCCCTTACGTGTTGTC
61 -AACCGATCGGAGAGGCAGAATGCGTAAGCCAG-GGATCGACCAGGTCCCCCC-TACGTGTTGTC
*
1144321 GATCCTGCTGTCGCAACCCTCGGTCCGGTCTGAT
123 GATCCTGCTG-CACAACCCTCGGTCCGGTCTGAT
** * *
1144355 CTTAGATTAGGAATGAACTCCGTATGAGTAAGTCAACCCATGAAACGAGCGTGCGGGCACTAAGC
1 CTTAGA-TAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTAA-C
* * * *
1144420 CGATCGAAGAGGCAGAAAGCGTAAGCCAGGGATCGACCTGGTCCCCCTCTACGTGCTGTCGATCC
64 CGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCAGGTCCCCC-CTACGTGTTGTCGATCC
* * * **
1144485 CGCTGCCACAACCCTTGGTCC-GACTGGGG
128 TGCTG-CACAACCCTCGGTCCGGTCT-GAT
* * * * * * * *
1144514 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGTGTGCAGGCACGCAAC
1 CTTAGATA-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCAC-TAAC
* * ** * *
1144579 CGGTCGGAGAAGCAGAATGCACAAG-CAGGGGATCGACCCGGT-CCCCCTGCGTGTTGTCGATCC
64 CGATCGGAGAGGCAGAATGCGTAAGCCA-GGGATCGACCAGGTCCCCCCTACGTGTTGTCGATCC
* * * *
1144642 TGCTGTAGCAACCCTCAGTCTGGTCCGAT
128 TGCTGCA-CAACCCTCGGTCCGGTCTGAT
* *
1144671 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGA-TAGGAATGAACTCCGTATGC
1144698 TTAGACTGGG
Statistics
Matches: 281, Mismatches: 51, Indels: 28
0.78 0.14 0.08
Matches are distributed among these distances:
156 1 0.00
157 53 0.19
158 14 0.05
159 162 0.58
160 4 0.01
161 1 0.00
163 45 0.16
164 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (155 bp):
CTTAGATAGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCACTAACCG
ATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCAGGTCCCCCCTACGTGTTGTCGATCCTGC
TGCACAACCCTCGGTCCGGTCTGAT
Found at i:1144612 original size:703 final size:697
Alignment explanation
Indices: 1143467--1144767 Score: 1739
Period size: 703 Copynumber: 1.9 Consensus size: 697
1143457 TGGCTCAAAG
*
1143467 TCTTAGACTGGGAATGAACTCCGCAAGCTTAGACATGGAATGAACTCCGGATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGCAAGCTTAGAAATGGAATGAACTCCGGATGCCTAAGCCAACC
* * * * ** *
1143532 CATGAAATGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAATCCGGGGATCTACC
66 CAAGAAACGAGCATGCGGGCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAAGATCGACC
* * *
1143597 TGGTCCCCCCTGCGTACTGTCGATCCTGTGGCCACAACCATCGGTCCGGTCCAATCTTAGACTGG
131 AGGTCCCCCCTACGTACTGTCGATCCTGTGGCCACAACCATCGGTCCGGTCCAATCTTAGACTAG
* * * *
1143662 GAATGAACTTCGTATGCATAAGTTAACCCACCAAACGAGTGTGCGGGCACCGAGCCAGTCGAAGA
196 GAATGAACTCCGTATGCATAAGTCAACCCACCAAACGAGCGTGCGGGCACCAAGCCAGTCGAAGA
* * * ** * **
1143727 GGCATAATGCGTAAGTCGAGGATCGATCCGATCCTTCTTTGTGTGCTGTCGATCCCGCTGCCACA
261 GGCAGAAAGCGTAAGCCGAGGATCGATCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGCCACA
* ** *
1143792 ACCCTTCATCCGGCTGGGGCTTACACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAAC
326 ACCCTTCATCCGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
* * * * * ** * * *
1143857 GGACGTGCGGGCGCTCAGCCGACCAGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGATCCCC
391 GGACGTGCAGGCACGCAACCGACCAGAGAAGCAGAATGCACAAGCAGGGGATCGACCCGAT-CCC
* * * *
1143922 CCTGTGTGCTACCGATGCTGCTGTCGAAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAAC
455 CCTGCGTGCTACCGATCCTGCTGTAGAAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAAC
* *
1143987 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG
520 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
1144052 CGCTCAGCCGACCAAGAAGGTAGAATACGTAAGCCAGGGATTGGCCTGGTCCCCCCCTGCGCGCT
585 CGCTCAGCCGACCAAGAAGGTAGAATACGTAAGCCAGGGATTGGCCTGGTCCCCCCCTGCGCGCT
1144117 GACGATCCTGCTACTGGTCCTGTTGCCACAACCCTCGGTTTGGTCTGA
650 GACGATCCTGCTACTGGTCCTGTTGCCACAACCCTCGGTTTGGTCTGA
* * *
1144165 TCTTAGACTGGGAATGAACTCCGTATGCTTAGAAATGGAATGAACTCCGTATGCCTAAGCCAACC
1 TCTTAGACTGGGAATGAACTCCGCAAGCTTAGAAATGGAATGAACTCCGGATGCCTAAGCCAACC
* * *
1144230 CAAGAAACGAGCGTGCGTACGGGCACTCAATCGATCGGAGAGGCAGAATGCGTAAGCCGAAGATC
66 CAAGAAACGAGCAT--G--CGGGCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAAGATC
* ** * * * **
1144295 GGCCAGGTCCCCCCTTACGTGTTGTCGATCCTGCT-GTCGCAACCCTCGGTCCGGTCTGATCTTA
127 GACCAGGTCCCCCC-TACGTACTGTCGATCCTG-TGGCCACAACCATCGGTCCGGTCCAATCTTA
* ** *
1144359 GATTAGGAATGAACTCCGTATG-AGTAAGTCAACCCATGAAACGAGCGTGCGGGCACTAAGCC-G
190 GACTAGGAATGAACTCCGTATGCA-TAAGTCAACCCACCAAACGAGCGTGCGGGCACCAAGCCAG
*
1144422 ATCGAAGAGGCAGAAAGCGTAAGCC-AGGGATCGA-CCTGGTCCCCCTCTACGTGCTGTCGATCC
254 -TCGAAGAGGCAGAAAGCGTAAGCCGA-GGATCGATCC-GATCCCCCTCTACGTGCTGTCGATCC
** *
1144485 CGCTGCCACAACCCTTGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
316 CGCTGCCACAACCCTTCATCCGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAA
* ** ** *
1144550 CCCACGAAATGGGTGTGCAGGCACGCAACCGGTCGGAGAAGCAGAATGCACAAGCAGGGGATCGA
381 CCCACGAAACGGACGTGCAGGCACGCAACCGACCAGAGAAGCAGAATGCACAAGCAGGGGATCGA
* * ** * ** *
1144615 CCCGGTCCCCCTGCGTGTTGTCGATCCTGCTGTAGCAACCCTCAGTCTGGTCCGATCTTAGACTG
446 CCCGATCCCCCTGCGTGCTACCGATCCTGCTGTAGAAACCCTCAGTCCAGTCCGATCTTAGACTA
*
1144680 GGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
511 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
*
1144745 GCGTGCGTGCGCTCAGCCGACCA
576 GCGTGCGGGCGCTCAGCCGACCA
1144768 GAAAGGCAGG
Statistics
Matches: 512, Mismatches: 81, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
698 72 0.14
700 1 0.00
702 188 0.37
703 250 0.49
704 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (697 bp):
TCTTAGACTGGGAATGAACTCCGCAAGCTTAGAAATGGAATGAACTCCGGATGCCTAAGCCAACC
CAAGAAACGAGCATGCGGGCACTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAAGATCGACC
AGGTCCCCCCTACGTACTGTCGATCCTGTGGCCACAACCATCGGTCCGGTCCAATCTTAGACTAG
GAATGAACTCCGTATGCATAAGTCAACCCACCAAACGAGCGTGCGGGCACCAAGCCAGTCGAAGA
GGCAGAAAGCGTAAGCCGAGGATCGATCCGATCCCCCTCTACGTGCTGTCGATCCCGCTGCCACA
ACCCTTCATCCGACTGGGGCTTACACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC
GGACGTGCAGGCACGCAACCGACCAGAGAAGCAGAATGCACAAGCAGGGGATCGACCCGATCCCC
CTGCGTGCTACCGATCCTGCTGTAGAAACCCTCAGTCCAGTCCGATCTTAGACTAGGAATGAACT
CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCGACCAAGAAGGTAGAATACGTAAGCCAGGGATTGGCCTGGTCCCCCCCTGCGCGCTG
ACGATCCTGCTACTGGTCCTGTTGCCACAACCCTCGGTTTGGTCTGA
Found at i:1144707 original size:26 final size:26
Alignment explanation
Indices: 1144671--1144723 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1144661 CTGGTCCGAT
1144671 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
1144697 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1144723 C
1 C
1144724 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1145423 original size:26 final size:26
Alignment explanation
Indices: 1145386--1145437 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1145376 GGTCAAAATA
1145386 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
1145412 TTAGAC-ATGGAATGAACTCCGTATGC
1 TTAGACTA-GGAATGAACTCCGTATGC
1145438 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:1145717 original size:159 final size:156
Alignment explanation
Indices: 1145411--1146229 Score: 619
Period size: 159 Copynumber: 5.2 Consensus size: 156
1145401 ACTCCGTATG
* *** * *
1145411 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTAAAGGTGCTCAAC
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
1145476 CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCACTGTGTGCTGTCGATCC
65 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-CCCTGCGTGCTATCGATCC
* *
1145541 TGCTACCGTAACGCTCGGTCCAGCCTGAT
129 TGCTACCGCAACCCTCGGTCC-GCCTGAT
* * * * * *
1145570 CTTAGATTGGAAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAGCGTGCGGGCGTTGAGC
1 CTTAGAATGG-AATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
1145635 CAGTCGAAGAGGCATAATGCGCAAGCCGGGGATCGACCCGATCCCCCTCTACGTGCTACCGATCC
65 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCC-CTGCGTGCTATCGATCC
** * * * * **
1145700 CACTGCCACAACCCTCGGTTCGGCTAGGG
129 TGCTACCGCAACCCTCGGTCCGCCT-GAT
* **
1145729 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACTG-GCGTGCGGTTGCTCAG
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAAC-GAGCGTGCGGGCGCTCAG
* * * *
1145793 CCGGCCAAAGAGGCAGAACGCGCAAGCTGGGGATCGGCCC-AGTCCCCCCTGCGTGCTATTGATC
64 CCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGA-TCCCCCCTGCGTGCTATCGATC
*
1145857 CTGCTACTGCAACCCTCGGTCCGGTCC-GAT
128 CTGCTACCGCAACCCTCGGTCC-G-CCTGAT
* * * * * * ** * * *
1145887 CTTAGATTGGGAATGAATTTCATATGACTAAGTCAACCCACAAAAGGAGAGTG-GGGCGCTGAGC
1 CTTAGAAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * * * * * *
1145951 CGACCGGAGAGGCATAATACGCAAGATGGGGATCGACCAGGTCCCCTTCTACGTGCTGTCGGT-C
65 CGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCC-CCTGCGTGCTATCGATCC
* * **
1146015 TCGCTACCACAACCCTCGGTCCGACTGGGG
129 T-GCTACCGCAACCCTCGGTCCGCCT-GAT
* * * *
1146045 CTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCATGCGGGTC-CTCAG
1 CTTAGA-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-CGCTCAG
* * ** *
1146109 CCGGCCGAAAAGGCAGAATGCGCAA-CCAAGGGATCGGCCTAATCCCCCCTGCGTTCTATCGATC
64 CCGGCCGAAGAGGCAGAATGCGCAAGCC-GGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATC
** ** * *
1146173 CTATTGTCGCAACCCTCGATCCAATCC-GAT
128 CTGCTACCGCAACCCTCGGTCC--GCCTGAT
*
1146203 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGAAT-GGAATGAACTCCGTATGC
1146230 TTAGACTGGG
Statistics
Matches: 500, Mismatches: 137, Indels: 47
0.73 0.20 0.07
Matches are distributed among these distances:
156 1 0.00
157 49 0.10
158 193 0.39
159 250 0.50
160 7 0.01
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (156 bp):
CTTAGAATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTGCGTGCTATCGATCCTG
CTACCGCAACCCTCGGTCCGCCTGAT
Found at i:1146067 original size:316 final size:315
Alignment explanation
Indices: 1145410--1146229 Score: 941
Period size: 316 Copynumber: 2.6 Consensus size: 315
1145400 AACTCCGTAT
* * ** *
1145410 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAACGTAAAGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GCGT-GCGGTGCTCAG
* ** * * * * *
1145475 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGGTCCCTCACTGTGTGCTGTCGATC
64 CCGGCCAAAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCAGTCCC-CCCTGCGTGCTATCGATC
* * * * *
1145540 CTGCTACCGTAACGCTCGGTCCAG-CCTGATCTTAGATTGGAAATGAACTCCGTATGCATAAGTC
128 CTGCTACTGCAACCCTCGGTCCAGTCC-GATCTTAGATTGGGAATGAACTCCATATGCATAAGTC
** * * * * * *
1145604 AACCCATGAAATGAGCGTGCGGGCGTTGAGCCAGTCGAAGAGGCATAATGCGCAAGCCGGGGATC
192 AACCCACAAAAGGAGAGTGCGGGCGCTGAGCCAGCCGAAGAGGCATAATACGCAAGACGGGGATC
* * * *
1145669 GACCCGATCCCCCTCTACGTGCTACCGATCCCACTGCCACAACCCTCGGTTCGGCTAGG
257 GACCAGATCCCCCTCTACGTGCTACCGATCCCACTACCACAACCCTCGGTCCGACTAGG
1145728 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACTGGCGTGCGGTTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGCGTGCGG-TGCTCAG
* * *
1145793 CCGGCCAAAGAGGCAGAACGCGCAAGCTGGGGATCGGCCCAGTCCCCCCTGCGTGCTATTGATCC
64 CCGGCCAAAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCAGTCCCCCCTGCGTGCTATCGATCC
* * *
1145858 TGCTACTGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAATTTCATATG-ACTAAGTCA
129 TGCTACTGCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCATATGCA-TAAGTCA
* *
1145922 ACCCACAAAAGGAGAGTG-GGGCGCTGAGCC-GACCGGAGAGGCATAATACGCAAGATGGGGATC
193 ACCCACAAAAGGAGAGTGCGGGCGCTGAGCCAG-CCGAAGAGGCATAATACGCAAGACGGGGATC
* * ** * * * *
1145985 GACCAGGTCCCCTTCTACGTGCTGTCGGTCTCGCTACCACAACCCTCGGTCCGACTGGG
257 GACCAGATCCCCCTCTACGTGCTACCGATCCCACTACCACAACCCTCGGTCCGACTAGG
* * *
1146044 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCATGAAACGGGCATGCGGGTCCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GGCGTGC-GGTGCTCAG
* * * * *
1146109 CCGGCCGAAA-AGGCAGAATGCGCAACCAAGGGATCGGCCTAATCCCCCCTGCGTTCTATCGATC
64 CCGGCC-AAAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCAGTCCCCCCTGCGTGCTATCGATC
* ** * * * *
1146173 CT-ATTGTCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGC
128 CTGCTACT-GCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCATATGC
1146230 TTAGACTGGG
Statistics
Matches: 426, Mismatches: 67, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
315 3 0.01
316 238 0.56
317 87 0.20
318 97 0.23
319 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (315 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGCGTGCGGTGCTCAGCC
GGCCAAAGAGGCAGAATGCGCAAGCAGGGGATCGGCCCAGTCCCCCCTGCGTGCTATCGATCCTG
CTACTGCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCATATGCATAAGTCAACC
CACAAAAGGAGAGTGCGGGCGCTGAGCCAGCCGAAGAGGCATAATACGCAAGACGGGGATCGACC
AGATCCCCCTCTACGTGCTACCGATCCCACTACCACAACCCTCGGTCCGACTAGG
Found at i:1146232 original size:26 final size:26
Alignment explanation
Indices: 1146203--1146254 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1146193 CCAATCCGAT
*
1146203 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
* *
1146229 CTTAGACTGGGGATAAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
1146255 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:1146965 original size:26 final size:26
Alignment explanation
Indices: 1146926--1146978 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1146916 GGCTCAAACT
* *
1146926 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATAAACTCCGTATG
1146952 CTTAGACTTG-GAATAAACTCCGTATG
1 CTTAGAC-TGCGAATAAACTCCGTATG
1146978 C
1 C
1146979 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATAAACTCCGTATG
Found at i:1147298 original size:26 final size:26
Alignment explanation
Indices: 1147269--1147321 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1147259 CCTGTCTGAT
1147269 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
1147295 CTTAGATTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
1147321 C
1 C
1147322 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:1148425 original size:35 final size:35
Alignment explanation
Indices: 1148379--1148447 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
1148369 GGGATGAACT
1148379 CCGTATGCCTAAGTCAACCCATGAAATGAGCGTGA
1 CCGTATGCCTAAGTCAACCCATGAAATGAGCGTGA
1148414 CCGTATGCCTAAGTCAACCCATGAAATGAGCGTG
1 CCGTATGCCTAAGTCAACCCATGAAATGAGCGTG
1148448 CGGGCGCTCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.20
Consensus pattern (35 bp):
CCGTATGCCTAAGTCAACCCATGAAATGAGCGTGA
Found at i:1148604 original size:26 final size:26
Alignment explanation
Indices: 1148566--1148618 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1148556 CCAGTTTGAT
*
1148566 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1148592 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1148618 C
1 C
1148619 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1148939 original size:159 final size:157
Alignment explanation
Indices: 1148591--1149093 Score: 551
Period size: 158 Copynumber: 3.2 Consensus size: 157
1148581 AACTCTGTAT
* * * *
1148591 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCTACGAAATGAGCGTGCGGGCTCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACC-ATGAAACGAGCGTACGGGCGCTCA
* ** * * * *
1148655 CCCGGCCAGAGAGGCAGAATGCGTAAGCCGGGGACCGGCCCGATCCCCCCTACATGCTATCGATC
64 GCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTACATGCTATCGATC
* * *
1148720 CTGCTATCATAACCCTCGGTCTGATTCGA
129 CTGCTGTCACAACCCTCGGTCTGGTTCGA
* * * * * *
1148749 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAATCATGAAACGAGCATTCGGGCGCTAAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACCATGAAACGAGCGTACGGGCGCTCAG
* * * *
1148814 CCGATCGGAGAGGCATAATGCGTAAGCCGGGGATCGACTCGGTCCCCCTCTACGTGCTATCGGTC
65 CCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCC-CTACATGCTATCGATC
* * *
1148879 CCGCTGGCACAACCCTCGGTCTGGTTGGA
129 CTGCTGTCACAACCCTCGGTCTGGTTCGA
* * * *
1148908 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCCACCCATAAAACGGGCGTACGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAG-CCAACCATGAAACGAGCGTACGGGCGCTCA
* * ** * * * *
1148972 GTCGATCGAAGAGGCAGAATGCACAAGTCGGGGATCGGCTCGGTCCCCCCTGCTTGCTGTCGATC
64 GCCGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTACATGCTATCGATC
* * *
1149037 CTGCTGTCGCAACCCTCGGTCTGGTCCAA
129 CTGCTGTCACAACCCTCGGTCTGGTTCGA
*
1149066 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
1149094 TTAGACTGGG
Statistics
Matches: 284, Mismatches: 56, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
157 2 0.01
158 147 0.52
159 134 0.47
160 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCATGAAACGAGCGTACGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGTAAGCCGGGGATCGGCTCGGTCCCCCCTACATGCTATCGATCCT
GCTGTCACAACCCTCGGTCTGGTTCGA
Found at i:1149103 original size:26 final size:26
Alignment explanation
Indices: 1149067--1149118 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1149057 CTGGTCCAAT
1149067 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1149093 CTTAGACTGGGGATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1149119 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1157317 original size:159 final size:159
Alignment explanation
Indices: 1156901--1157318 Score: 473
Period size: 159 Copynumber: 2.6 Consensus size: 159
1156891 AACTCCGTAT
* *
1156901 GCTTAGACATGGAATGATCTCCGTATGCCTAAGCCAACCCACGAAACGAGCGAGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
1156966 TCGGTCGAAGAGGCAGAATGCGTAAGTCGGGGATCAGCCTGGTCCCCCTCTGCATGCTAGCGATC
66 TCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATCACCCTGATCCACCTCTGCATGCTAGCGATC
* * * *
1157031 CTGCTACCGCAACCCTCAATCCGGTCTGA
131 CCGCCACCACAACCCTCAATCCGGACTGA
* * * * *
1157060 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
1157124 GCCAATCGAAGCGGCATAATGCGCAAGCTGGGGATCACCCTGATCCACCTCTGCGTGCT-GCTGG
65 GTCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATCACCCTGATCCACCTCTGCATGCTAGC-GA
* ** *
1157188 TCCCGCCGCCACAACCCTCGGTCC-GACTGGG
129 TCCCGCCACCACAACCCTCAATCCGGACT-GA
* * *
1157219 GCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCACGAAACGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
1157284 TCGACCGGAGAGGCAGAATTCGTAAGCCAGGGATC
66 TCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATC
1157319 GGTCCGATCA
Statistics
Matches: 209, Mismatches: 46, Indels: 8
0.79 0.17 0.03
Matches are distributed among these distances:
158 6 0.03
159 202 0.97
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGATCGAAGAGGCAGAATGCGTAAGCCGGGGATCACCCTGATCCACCTCTGCATGCTAGCGATC
CCGCCACCACAACCCTCAATCCGGACTGA
Found at i:1157414 original size:26 final size:26
Alignment explanation
Indices: 1157373--1157425 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1157363 TCGGTCCGGT
*
1157373 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
1157399 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1157425 C
1 C
1157426 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1158284 original size:158 final size:157
Alignment explanation
Indices: 1157767--1158331 Score: 520
Period size: 159 Copynumber: 3.6 Consensus size: 157
1157757 ACTCCGTATG
** * * * * ** *
1157767 CTTAGACAT-GGAATGAACTTTGTATGTCTAAGCCAACCCACGAAACGAGCGAACGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTATGTCAGCCCACGAAACGAGCGTGCAGGCGCTCAG
* * * *
1157831 TCGACCAGAGAGGCAGAATGCGCAAGCCGGAGACCGACCTGAT-CCCCATGCGTGCTATCGATCC
65 TCGACCAGAGAGGCAGAATGCGCAAGCCGG-GATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
* *
1157895 TACTGCCGCAACCCTCGGT-TCGATCCAAT
129 TGCTACCGCAACCCTCGGTCT-GATCCAAT
* * * * *
1157924 CTTAGACTGGGAATGAACTCTGTATGCCAAAGTCAGCCCATC-AAACGAGCGTGCGGGCGCTGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAGCCCA-CGAAACGAGCGTGCAGGCGCTCAG
* * * ** * *
1157988 -CTGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTCTGTATGTTGTCGCT
65 TC-GACCAGAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGATCCCCC-CTGCGTGCTGTCGAT
* * * ** **
1158052 CCCGCTACCACTACCCTCGGTCCAACTGGAGA-
127 CCTGCTACCGCAACCCTCGGTCTGA-TCCA-AT
* * *
1158084 -TTAGACAT-GGAATGAACTCCCTATGCCTAAT-CCAAG-CCACGAAACGAGTGTGCAGGCGCTC
1 CTTAGAC-TGGGAATGAACTCCGTATGCCT-ATGTC-AGCCCACGAAACGAGCGTGCAGGCGCTC
* * *
1158145 AGTCGGCCAGAGAGGCAGAATGCGCAAGCCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGAA
63 AGTCGACCAGAGAGGCAGAATGCGCAAGCCG-GGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
* *
1158210 CTTGCTACCGCAACCCTTGGTCTGATCCAAT
127 CCTGCTACCGCAACCCTCGGTCTGATCCAAT
* * * *
1158241 CTTAGACTGGGGATGAACTCCGTATGCCTATGTCAGCCCACGAAAAGAGCGTTCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAGCCCACGAAACGAGCGTGCAGGCGCTCAGT
*
1158306 CGACCAGAGAGGCAGGATGCGCAAGC
66 CGACCAGAGAGGCAGAATGCGCAAGC
1158332 TGGGGATTGA
Statistics
Matches: 324, Mismatches: 64, Indels: 39
0.76 0.15 0.09
Matches are distributed among these distances:
156 3 0.01
157 92 0.28
158 110 0.34
159 111 0.34
160 7 0.02
161 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAGCCCACGAAACGAGCGTGCAGGCGCTCAGT
CGACCAGAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCCTG
CTACCGCAACCCTCGGTCTGATCCAAT
Found at i:1160184 original size:159 final size:155
Alignment explanation
Indices: 1159881--1160378 Score: 511
Period size: 159 Copynumber: 3.1 Consensus size: 155
1159871 GTGACTCAAA
1159881 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * *
1159946 GCCGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGACCCAATCCCCCCATGCCTGCTATCGAT
66 GCCGGTCGGAGAGG-CGAATGCGCAAGCCAGGGATCG-CCCAGTCCCCCC-TGCGTGCTACCGAT
**
1160011 C-CTGCTATCGCAACCCTCAGTCTGATCT-G
128 CTC-GCTGCCGCAACCCTC-GTCTG-TCTCG
* * * * * *
1160040 ATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCAACGAAACGAGCGTGCAGGCGCTGA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
1160105 GCCGGTTGAAGAGGCGTAATGCGCAAGCCAGTGATCAGCCCAGTCCCCTTCTACGTGCTGCCGGT
66 GCCGGTCGGAGAGGCG-AATGCGCAAGCCAGGGATC-GCCCAGTCCCC-CCTGCGTGCTACCGAT
* * *
1160170 CTCGCTGCCACAACCCTCGGTCTGGCTGG
128 CTCGCTGCCGCAACCCTC-GTCTGTCTCG
** * * * * *
1160199 GGCTTGGACAT-GGAATGAACTCCCTATGCCTAGGCCAACCCATGAAACGGGCGTGCGGGCACTC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* ** *
1160263 AGCAGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCG-GCACGATCCCCCCTGCGTGCTACCGA
65 AGCCGGTCGGAGAGGC-GAATGCGCAAGCCAGGGATCGCCCA-G-TCCCCCCTGCGTGCTACCGA
*
1160327 TCTTGCTGCCGCAACCCTCGATCTGGT-TCG
127 TCTCGCTGCCGCAACCCTCG-TCT-GTCTCG
1160357 ATCTTAGACTGGGAATGAACTC
1 ATCTTAGACTGGGAATGAACTC
1160379 TATATGCTTA
Statistics
Matches: 274, Mismatches: 53, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.01
158 55 0.20
159 210 0.77
160 5 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.19
Consensus pattern (155 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
GCCGGTCGGAGAGGCGAATGCGCAAGCCAGGGATCGCCCAGTCCCCCCTGCGTGCTACCGATCTC
GCTGCCGCAACCCTCGTCTGTCTCG
Found at i:1160410 original size:26 final size:26
Alignment explanation
Indices: 1160359--1160411 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1160349 CTGGTTCGAT
*
1160359 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
1160385 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1160411 C
1 C
1160412 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1162105 original size:26 final size:26
Alignment explanation
Indices: 1162069--1162121 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1162059 CCCGTTCGAT
1162069 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
1162095 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1162121 C
1 C
1162122 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1162465 original size:26 final size:26
Alignment explanation
Indices: 1162436--1162488 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1162426 CCGGTCTGAT
1162436 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
1162462 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
1162488 C
1 C
1162489 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:1162511 original size:184 final size:184
Alignment explanation
Indices: 1162277--1162646 Score: 515
Period size: 184 Copynumber: 2.0 Consensus size: 184
1162267 GCCGATTGGG
* * *
1162277 GCTTAAACATCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTTAG
1 GCTTAAACATCGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
* * * * * * *
1162342 TCGGCCGAAAAGACAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTTCGTGCTGTCGATCC
66 CCGACCGAAAAGACAGAATGCGCAAGCCAGGGATCGGCCCGATCCCACCTACGTGCTATCGATCC
* * *
1162407 TGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
* * * *
1162461 GCTTAGACATGGAATGAACTCCGTATGCCTAAGTCGACCCACAAAACGAGCGTGCGGGCGCTCAA
1 GCTTAAACATCGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
* ** * *
1162526 CCGACCGAAGAGGTAGAATGCGTAAGCCAGGGATTGGCCCGATCCCACCTACGTGCTATCGATCC
66 CCGACCGAAAAGACAGAATGCGCAAGCCAGGGATCGGCCCGATCCCACCTACGTGCTATCGATCC
* * *
1162591 TGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCATAT
131 TGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
1162645 GC
1 GC
1162647 CTAAGTCAAC
Statistics
Matches: 161, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
184 161 1.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (184 bp):
GCTTAAACATCGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAA
CCGACCGAAAAGACAGAATGCGCAAGCCAGGGATCGGCCCGATCCCACCTACGTGCTATCGATCC
TGCTGCCACAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:1162761 original size:158 final size:157
Alignment explanation
Indices: 1162462--1162962 Score: 519
Period size: 158 Copynumber: 3.2 Consensus size: 157
1162452 ACTCCGTATG
* * *
1162462 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGTCGACCCACAAAACGAGCGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
1162526 CCGACCGAAGAGGTAGAATGCGTAAGCCAGGGATTGGCCCGATCCCACCTACGTGCTATCGATCC
65 CCGACTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-CCTGCGTGCTATCGATCC
*
1162591 TGCTGCCGCAACCCTCGGTTCGATCCGAT
129 TGCTACCGCAACCCTCGGTTCGATCCGAT
* * * *
1162620 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCAACGAAATGAGCGTGC-GGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
1162684 CGACTGGAGAGGCATAATACGCAAGCCGGGGATCGGCCCGGTCCCTCTCTGCGTGCTGTCGGTCC
66 CGACTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCC-C-CTGCGTGCTATCGATCC
* * * * **
1162749 CGCTACCACAACCCTTGGTTCAGCTAGGA-
129 TGCTACCGCAACCCTCGGTTC-GATCCGAT
* * * * * *
1162778 ATTAGAC-GTGGAATGAACTCCCTATGCCCAAGCCAACCCACGAAACGCGCATGCGGGCGCTCAG
1 CTTAGACTG-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
1162842 CTGGCCT-AAAAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTGCGTGCTATCGATC
65 C-CGACTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGAT-CCCCCTGCGTGCTATCGATC
* * *
1162906 CTGCTACCGCAACCCTC-GATCCAGTCTGAT
128 CTGCTACCGCAACCCTCGGTTCGA-TCCGAT
*
1162936 GTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
1162963 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 56, Indels: 20
0.78 0.16 0.06
Matches are distributed among these distances:
157 53 0.19
158 173 0.62
159 45 0.16
160 6 0.02
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGACTGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCTGCGTGCTATCGATCCTG
CTACCGCAACCCTCGGTTCGATCCGAT
Found at i:1162988 original size:26 final size:26
Alignment explanation
Indices: 1162937--1162988 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1162927 CAGTCTGATG
**
1162937 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCACATGC
*
1162963 TTAGACTGGGGATGAACTCCACATGC
1 TTAGACTGGGAATGAACTCCACATGC
1162989 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCACATGC
Found at i:1163672 original size:26 final size:26
Alignment explanation
Indices: 1163634--1163686 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1163624 GGCTCAAAAT
1163634 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1163660 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1163686 C
1 C
1163687 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1164052 original size:158 final size:157
Alignment explanation
Indices: 1163659--1164104 Score: 423
Period size: 158 Copynumber: 2.8 Consensus size: 157
1163649 AACTCCGTAT
* * *
1163659 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAATGAGCATGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGAGCTCAA
* ** *
1163724 CCGGCCGGAGAGGCAGAATGCACAAGTTGGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCC
66 CCGGCCGGAGAGGCA-AATGCGCAAGCCGGGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCC
** * * *
1163789 TGCTGCCGCAACCCTCGGTCCAGTCCAA
130 CACTACCACAACCCTCAGTCCAGTCCAA
* * * ** ** *
1163817 TCTTAGATAGGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAATGAGCGTGCGGGCA-CTGA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGG-AGCTCA
* * * * ** *
1163881 GCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAGCCTGGTTCCCCTCTTTGTGCTGT-GGT
65 ACCGGCCGGAGAGGCA-AATGCGCAAGCCGGGGATCAGCCT-GATCCCCCCTGCGTGCTGTCGAT
***
1163945 CCCACTACCACAACCCTCAGTCCAG-CTGGG
128 CCCACTACCACAACCCTCAGTCCAGTC-CAA
* * * * *
1163975 GCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGGAGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGAGCTCAA
* * * * * * *
1164040 CCGGCTGAAGAGGCAAATTGCGAAAGCCGGGGATC-GACCCGGTCCCTCCTGCGTGCTGCCGATC
66 CCGGCCGGAGAGGCAAA-TGCGCAAGCCGGGGATCAG-CCTGATCCCCCCTGCGTGCTGTCGATC
1164104 C
129 C
1164105 TGTTGTCGCA
Statistics
Matches: 224, Mismatches: 57, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
157 18 0.08
158 191 0.85
159 15 0.07
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGAGCTCAA
CCGGCCGGAGAGGCAAATGCGCAAGCCGGGGATCAGCCTGATCCCCCCTGCGTGCTGTCGATCCC
ACTACCACAACCCTCAGTCCAGTCCAA
Found at i:1164788 original size:11 final size:11
Alignment explanation
Indices: 1164774--1164798 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1164764 GCTCTCCGGT
1164774 GATGCTCCGAC
1 GATGCTCCGAC
1164785 GATGCTCCGAC
1 GATGCTCCGAC
1164796 GAT
1 GAT
1164799 TGTGCCCCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (11 bp):
GATGCTCCGAC
Found at i:1164907 original size:26 final size:26
Alignment explanation
Indices: 1164869--1164921 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1164859 GGCTTAAAAT
1164869 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1164895 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
1164921 C
1 C
1164922 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1165399 original size:26 final size:26
Alignment explanation
Indices: 1165370--1165422 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1165360 CCAGTCCGAT
1165370 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1165396 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1165422 C
1 C
1165423 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1165792 original size:26 final size:26
Alignment explanation
Indices: 1165763--1165815 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1165753 CCGATCCGAT
1165763 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGA-TGGGGAATGAACTCCGTATG
*
1165789 CTTAGATGGGGTATGAACTCCGTATG
1 CTTAGATGGGGAATGAACTCCGTATG
1165815 C
1 C
1165816 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGATGGGGAATGAACTCCGTATG
Found at i:1165886 original size:184 final size:183
Alignment explanation
Indices: 1165539--1165888 Score: 468
Period size: 184 Copynumber: 1.9 Consensus size: 183
1165529 CTGCCAATCC
* * * *
1165539 TGCTGCTGGTCCTACATCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATAT
1 TGCTGCTGATCCTACACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
* * **
1165604 GCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGCGCTCAG
66 GCTTAGACAGCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* ** * * * *
1165669 TCGGTCGGAGAGGCAGAATGCGTAAGTCGGGGATCGGCCCGATCCCCCCTATG
131 CCGACCAGAGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTATG
* *
1165722 TGCTGCTGATCCTACTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTA
1 TGCTGCTGATCCTAC-ACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATA
** * * * *
1165787 TGCTTAGATGGGGTATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCA
65 TGCTTAGACAGCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCA
1165852 GCCGACCAGAGAGGTAAG-ATGCGCAAGCCGGGGATCG
130 GCCGACCAGAGAGG-AAGAATGCGCAAGCCGGGGATCG
1165889 AATGGGTGGT
Statistics
Matches: 142, Mismatches: 23, Indels: 3
0.85 0.14 0.02
Matches are distributed among these distances:
183 14 0.10
184 126 0.89
185 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (183 bp):
TGCTGCTGATCCTACACCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCATAT
GCTTAGACAGCGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGACCAGAGAGGAAGAATGCGCAAGCCGGGGATCGGCCCGATCCCCCCTATG
Done.