Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 12 of 93
Found at i:1247139 original size:26 final size:26
Alignment explanation
Indices: 1247110--1247161 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1247100 CGGTTCGATT
*
1247110 TTAGACTGG-GAATGAACTCCGTATGC
1 TTAGACTGGAG-ATGAACTCCGCATGC
1247136 TTAGACTGGAGATGAACTCCGCATGC
1 TTAGACTGGAGATGAACTCCGCATGC
1247162 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (26 bp):
TTAGACTGGAGATGAACTCCGCATGC
Found at i:1247518 original size:26 final size:26
Alignment explanation
Indices: 1247476--1247528 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1247466 CTGGTCCGAT
*
1247476 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1247502 CTTAGACAT-GGATTGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1247528 C
1 C
1247529 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1247849 original size:159 final size:158
Alignment explanation
Indices: 1247503--1248002 Score: 510
Period size: 158 Copynumber: 3.2 Consensus size: 158
1247493 CTCTGTATGC
* * * ** **
1247503 TTAGACATGGATTGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGAACGGGCGCTCAATC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
* * * *
1247568 GGCCAGAGAGGCAGAATGC-TCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGTCGATCC
66 GGCTAGAGAGGCAGAATGCGT-AAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCC
* * * **
1247631 TGCTACAGCAACCCTCGGTCCGATTTGATC
130 TGCTACA-CAACCCTCAGTCCGGTTGGAGA
* * * *
1247661 TTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * *
1247725 CGACTGGAGACACATAATGCGTAAGCCGAGGATCGGCCCGATCCCCCTCTGTATGCTGTCGGT-C
65 CGGCTAGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCC
*
1247789 TCGCTATCACAACCCTCAGTCCGGTTGGGGA
130 T-GCTA-CACAACCCTCAGTCCGGTTGGAGA
* * *
1247820 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGCGTGCAGGCACTCAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GCGTGCGGGCGCTCAGC
* * * *
1247884 CGGCTAGAGAGGCAGAATGCGTAAGCTGAGGATCGGTCCGGT-CCCCTCTGCATGCTGCCGATCC
65 CGGCTAGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCC
* * ** **
1247948 TGCTGCCGCAACCCTCAGTCCGGTCCGATC
130 TGCT-ACACAACCCTCAGTCCGGTTGGAGA
1247978 TTAGAC-TAGGAATGAACTCCGTATG
1 TTAGACAT-GGAATGAACTCCGTATG
1248003 ATTAGACTGC
Statistics
Matches: 278, Mismatches: 54, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
157 2 0.01
158 151 0.54
159 122 0.44
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
GGCTAGAGAGGCAGAATGCGTAAGCCGAGGATCGGCCCGATCCCCCTCTGCATGCTGTCGATCCT
GCTACACAACCCTCAGTCCGGTTGGAGA
Found at i:1248007 original size:26 final size:26
Alignment explanation
Indices: 1247978--1248028 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1247968 CGGTCCGATC
1247978 TTAGACTAG-GAATGAACTCCGTATGA
1 TTAGACT-GCGAATGAACTCCGTATGA
*
1248004 TTAGACTGCGGATGAACTCCGTATG
1 TTAGACTGCGAATGAACTCCGTATG
1248029 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCGTATGA
Found at i:1248748 original size:26 final size:26
Alignment explanation
Indices: 1248710--1248762 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1248700 GGCTCAAAAT
1248710 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1248736 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1248762 C
1 C
1248763 CTAGGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1249166 original size:159 final size:156
Alignment explanation
Indices: 1248738--1249175 Score: 468
Period size: 159 Copynumber: 2.8 Consensus size: 156
1248728 TCCGTATGCT
** *
1248738 TAGACATGGAATGAACTCCGTATGCCTAGGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
1 TAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * *
1248803 ACCGGAGAGGCAGAATGCACAAGCCGGGGATCGACCCGATCCCCTCCTGCGTGCTGTCAATCCTG
66 ACCGAAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGAT-CCC-CCTGCGTGCTGCCAATCCCG
* * * *
1248868 CAGCCATAACCCTTGATCCAGTATGATCT
128 CAGCCACAACCCTCGATCCAGTATGAGCA
* * * * *
1248897 TACAC-TGGGAATGAACTCCGTATGCATAAGT-CAACCCATGAAACGAGCGTGCGGGCGTTGAGC
1 TAGACAT-GGAATGAACTCCGTATGCCTAA-TCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
1248960 CGACCGAAAAGGCATAAGGCGTAAGCCGAGGATCGGCTCGATGCCCCTGTACGTGCTGCCAGTCC
64 CGACCGAAGAGGCAGAATGCGCAAGCCG-GGATCGACCCGATCCCCCTG--CGTGCTGCCAATCC
* * *
1249025 CGCTGCCACAACCCTCGGTCCAGCTA-GGGCA
126 CGCAGCCACAACCCTCGATCCAG-TATGAGCA
* * *
1249056 TAGACATGGAATGAACTCCCTATGCCTAATCCAACCCACGAAACGGGCGTGCGGGCACTCAGCCG
1 TAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* *
1249121 GCCGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCTTGTGTGCTG
66 ACCGAAGAGGCAGAATGCGCAAGCC-GGGATCGACCCGATCCCCC-TGCGTGCTG
1249176 TCGATCCTGC
Statistics
Matches: 225, Mismatches: 44, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
157 4 0.02
158 11 0.05
159 204 0.91
160 6 0.03
ACGTcount: A:0.25, C:0.31, G:0.28, T:0.16
Consensus pattern (156 bp):
TAGACATGGAATGAACTCCGTATGCCTAATCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
ACCGAAGAGGCAGAATGCGCAAGCCGGGATCGACCCGATCCCCCTGCGTGCTGCCAATCCCGCAG
CCACAACCCTCGATCCAGTATGAGCA
Found at i:1249246 original size:25 final size:26
Alignment explanation
Indices: 1249212--1249263 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
1249202 CCGGTCCGAT
1249212 CTTAGACTGGGAATGAACTC-GTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
1249237 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
1249263 C
1 C
1249264 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 19 0.76
26 6 0.24
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:1250473 original size:26 final size:26
Alignment explanation
Indices: 1250432--1250484 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1250422 CTGGTCCGAT
*
1250432 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
1250458 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
1250484 C
1 C
1250485 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:1251057 original size:26 final size:26
Alignment explanation
Indices: 1251019--1251071 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1251009 CCAGTTCGAT
*
1251019 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1251045 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1251071 C
1 C
1251072 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1251440 original size:159 final size:157
Alignment explanation
Indices: 1251044--1251459 Score: 388
Period size: 159 Copynumber: 2.6 Consensus size: 157
1251034 AACTCTGTAT
* * *
1251044 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAGCGAACGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * **
1251109 CCGATCGGAATGGTAGAATGCGCAAGCCGGGGATCGACCCGATCCCCACTACGTGCTGTCGATCT
66 CCGATCGGAA-GGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCACTACGTGCTACCGATCT
* ** *
1251174 TACTGCTGTAACCCTCGGTGTGGTCCGA
130 CACTGCCATAACCCTCGGTCTGGTCCGA
* * * * * * * *
1251202 TCTTAGA-TTGGGAATGAACTCCGTATGCGTAAGTCAACCCATGAAACGAGCGTTCAGGCACTAA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
* ** * * ** * * * *
1251266 ACCGGCCAGAAAGGCATAATGCGCAAGCTTAGGATCTG-CCCGGTCCCCCTCTGCGTGCTACCGG
65 GCCGATC-GGAAGGCAGAATGCGCAAGCCGAGGATC-GACCCGAT-CCCCACTACGTGCTACCGA
* * *
1251330 TCTCGCTGCCATAACCCTCGGTCTGG-CTGGG
127 TCTCACTGCCATAACCCTCGGTCTGGTC-CGA
* * * *
1251361 GCTTAGACATGGAACGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * *
1251426 CCGATCGGAGAGGCAGAATGGGTAAACCGAGGAT
66 CCGATCGGA-AGGCAGAATGCGCAAGCCGAGGAT
1251460 TGGCCTGATC
Statistics
Matches: 196, Mismatches: 55, Indels: 13
0.74 0.21 0.05
Matches are distributed among these distances:
157 1 0.01
158 82 0.42
159 112 0.57
160 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.28, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCACTACGTGCTACCGATCTC
ACTGCCATAACCCTCGGTCTGGTCCGA
Found at i:1251549 original size:26 final size:26
Alignment explanation
Indices: 1251520--1251575 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
1251510 CTGATCCGAT
* *
1251520 CTTAGATTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
**
1251546 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
1251572 CTTA
1 CTTA
1251576 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:1251911 original size:26 final size:26
Alignment explanation
Indices: 1251860--1251912 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1251850 TCGGTTCGAT
*
1251860 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1251886 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
1251912 C
1 C
1251913 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1252072 original size:197 final size:195
Alignment explanation
Indices: 1251690--1252135 Score: 595
Period size: 197 Copynumber: 2.3 Consensus size: 195
1251680 TGCGATTGGG
* * * *
1251690 GCTTAGACATGGAATGAACTTCGTATACCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTTAA
1 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
* * * * * *
1251755 TCGACGGAGAGGCAGAATGGGCAAGTCAGGGATCGGCCCGGTCCCTCCTGCATGCTACCGATCCT
66 TCGACAGAGAGGCAGAATGCGCAAGTCAGGGACCAGCCCGATCCCCCCTGCATGCTACCGATCCT
* * * ** * * * *
1251820 GCTACTGGTCCTGCTGCCGCAACCTTTGGTTCGGTTCGATCTTAGACTGGGAATGAACTTCATAT
131 GCTACTGGTCCTGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATAT
* * * *
1251885 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
* **
1251950 TCGACCAGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCCGATCCCCCCCTGCATGCTGTCGATC
66 TCGA-CAGAGAGGCAGAATGCGCAAGTCAGGGACCAGCCCGAT-CCCCCCTGCATGCTACCGATC
* *
1252015 TTGCTACTGGTCCTGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGT
129 CTGCTACTGGTCCTGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCAT
1252080 AT
194 AT
* * *
1252082 GCTTAGACATGGAATGAACTATGCATGCCTAAGCCAACCCATGGAACGAGCGTG
1 GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTG
1252136 TGGGTGCTAA
Statistics
Matches: 217, Mismatches: 32, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
195 62 0.29
196 32 0.15
197 123 0.57
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (195 bp):
GCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCATGAAACGAGCGTGCAGGCGCTCAA
TCGACAGAGAGGCAGAATGCGCAAGTCAGGGACCAGCCCGATCCCCCCTGCATGCTACCGATCCT
GCTACTGGTCCTGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCATAT
Found at i:1252109 original size:26 final size:26
Alignment explanation
Indices: 1252057--1252109 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
1252047 CCGGTCCGAT
* *
1252057 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACGCATG
*
1252083 CTTAGAC-ATGGAATGAACTATGCATG
1 CTTAGACTA-GGAATGAACTACGCATG
1252109 C
1 C
1252110 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGCATG
Found at i:1252429 original size:26 final size:26
Alignment explanation
Indices: 1252400--1252452 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1252390 CTTGTCTGAT
*
1252400 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1252426 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1252452 C
1 C
1252453 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1252978 original size:26 final size:26
Alignment explanation
Indices: 1252949--1253001 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1252939 CCGGTCCGAT
*
1252949 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
1252975 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
1253001 C
1 C
1253002 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:1253004 original size:892 final size:879
Alignment explanation
Indices: 1251304--1253035 Score: 2348
Period size: 892 Copynumber: 2.0 Consensus size: 879
1251294 TTAGGATCTG
* * * * *
1251304 CCCGGTCCCCCTCTGCGTGCTACCGGTCTCGCTGCCATAACCCTCGGTCTGGCTGGGGCTTAGAC
1 CCCGATCCCCCTCTGCGTGCTACCGGTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGAC
* * * * * * *
1251369 ATGGAACGAACTCCCTATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGG
66 ATAGAACGAACTCCCTATGCCTAAACCAACCCAAGAAACGAGCGTACAGGCGCTCAGCAGACCGA
* ** * * ** * *
1251434 AGAGGCAGAATGGGTAAACCGAGGATTGGCCTGATCCCCCCTGTGTTCTATCAATCCTGTTATCG
131 AGAGGCAAAATCAGCAAACCGAGGATTGGCCCGATCCCCCCTACGTTCTACCAATCCTGTTACCG
*
1251499 CAACCCTCGATCTGATCCGATCTTAGATTGGAAATGAACTCTGTATGCTTAGACTGGGGATGAAC
196 CAACCCTCGATCTGATCCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGGATGAAC
*
1251564 TCCGTATGCTTAAGTCAACCCATGAAAAGAGTGTGCAGGCGCTCAGCCGGCCAGAGAGGCATAAT
261 TCCGTATGCCTAAGTCAACCCATGAAAAGAGTGTGCAGGCGCTCAGCCGGCCAGAGAGGCATAAT
** * * * * * *
1251629 GTGCAAGCCGGGGATCGGCCTAGTCCCCCTCTGCGTGTTGTCGACCCTCGGTGCGATTGGGGCTT
326 ACGCAAGCCGGGGATCAGCCCAGTCCCCCTCTACGTGCTGTCGACCCTCGGTGCGACTGGGGATT
* * * * *
1251694 AGACATGGAATGAACTTCGTATACCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTTAATCGA
391 AGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAACCGA
* ** * * *
1251759 CGGAGAGGCAGAATGGGCAAGTCAGGGATCGGCCCGGTCCCTCCTGCATGCTACCGATCCTGCTA
456 CGGAGAGGCAAAATACGCAAGTCAAGGATCGACCCGGTCCCTCCTACATGCTACCGATCCTGCTA
* * * * *
1251824 CTGGTCCTGCTGCCGCAACCTTTGGTTCGGTTCGATCTTAGACTGGGAATGAACTTCATATGCTT
521 CTAGTCCTACTGCCGCAACCCTCGGTTCGATTCGATCTTAGACTGGGAATGAACTTCA-ATGCTT
* * *
1251889 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGA
585 AGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCACTCAGTCGA
* * *
1251954 CCAGAGAGGCAGAATGCGCAAGTCGGGGACCAGCCCGATCCCCCCCTGCATGCTGTCGATCTTGC
650 CCAGAGAGGCAGAATGCGCAAGTCAGGGACAAGCCCGATCCCCCCCTACATGCTGTCGATCTTGC
*
1252019 TACTGGTCCTGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
715 TACTGGTCCAGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
* * *
1252084 TTAGACATGGAATGAACTATGCATGCCTAAGCCAACCCATGGAACGAGCGTGTGGGTGCTAAGCT
780 TTAGACATGGAATAAACTATGCATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAGCT
1252149 GGCCGGAGAAGCATAATACGTAAGTCGGAGATTGA
845 GGCCGGAGAAGCATAATACGTAAGTCGGAGATTGA
* * * *
1252184 CCCGATCCCCCTTTGCGTGTTGCCGGTCCCACTGCCACAACCCTCGGTTTGACTGGGGCTTAGAC
1 CCCGATCCCCCTCTGCGTGCTACCGGTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGAC
** * * *
1252249 ATAGAGTGAACTCCCTATGGCTAAGCCAACCCAAGAAACGGGCGTACAGGCGCTCAGTCAG-CCG
66 ATAGAACGAACTCCCTATGCCTAAACCAACCCAAGAAACGAGCGTACAGGCGCTCAG-CAGACCG
** * * *
1252313 AAGAGGCAAAATCAGCAAGTCGGGGATTGGCCCGATCCCCCCTACGTTCTACCGATCCTGTTGCC
130 AAGAGGCAAAATCAGCAAACCGAGGATTGGCCCGATCCCCCCTACGTTCTACCAATCCTGTTACC
* *
1252378 GCAACCCTCGATCTTG-TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGA
195 GCAACCCTCGATC-TGATCCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGGATGA
* * *
1252442 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGTGCTCAGCCGACCGGAGAGGGCGA
259 ACTCCGTATGCCTAAGTCAACCCATGAAAAGAGTGTGCAGGCGCTCA---G-CC-------G-G-
1252507 CCAGAGAGGCATAATACGCAAGCCGGGGATCAGCCCAGTCCCCCTCTACGTGCTGTCGACCCTCG
311 CCAGAGAGGCATAATACGCAAGCCGGGGATCAGCCCAGTCCCCCTCTACGTGCTGTCGACCCTCG
* *
1252572 GT-CTGGCTGGGGATTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT
376 GTGC-GACTGGGGATTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGT
* * *
1252636 GCGGGCACTCAACCGACGGAGAGGCAAAATACGCAAGTCAAGGATCGACCCGTTCCC-CCTACGT
440 GCAGGCACTCAACCGACGGAGAGGCAAAATACGCAAGTCAAGGATCGACCCGGTCCCTCCTACAT
* * *
1252700 GCTGCCGATCCTGCTACTAGTCCTACTGTCGCAACCCTCGG-TCTGATTCGATCTTAGATTGGGA
505 GCTACCGATCCTGCTACTAGTCCTACTGCCGCAACCCTCGGTTC-GATTCGATCTTAGACTGGGA
1252764 ATGAACTCTGC-ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
569 ATGAACT-T-CAATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGC
* * * *
1252828 ATTCGAGCACTCAGTCGGCCAGAGAGGTAGAATGCGCAAG-CTAGGGACAAGCCCGATCCCCTCC
632 ATGCGAGCACTCAGTCGACCAGAGAGGCAGAATGCGCAAGTC-AGGGACAAGCCCGATCCCCCCC
* *
1252892 TACGTGCTGTCGATCTTGCTACTGGTCCAGCTGCCA-CAACCCT-AGGTCCGGTCCGATCTTAGA
696 TACATGCTGTCGATCTTGCTACTGGTCCAGCT-ACAGCAACCCTCA-GTCCGGTCCGATCTTAGA
* * *
1252955 CTGGGAATGAACTCCGTATGCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAA
759 CTAGGAATGAACTCCGTATGCTTAGACATGGAATAAACTATGCATGCCTAAGCCAACCCATGAAA
*
1253020 TGAGCGTGCGGGTGCT
824 CGAGCGTGCGGGTGCT
1253036 TAGCCAGCCG
Statistics
Matches: 736, Mismatches: 94, Indels: 32
0.85 0.11 0.04
Matches are distributed among these distances:
880 257 0.35
881 4 0.01
883 1 0.00
884 2 0.00
891 5 0.01
892 301 0.41
893 165 0.22
894 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (879 bp):
CCCGATCCCCCTCTGCGTGCTACCGGTCCCACTGCCACAACCCTCGGTCTGACTGGGGCTTAGAC
ATAGAACGAACTCCCTATGCCTAAACCAACCCAAGAAACGAGCGTACAGGCGCTCAGCAGACCGA
AGAGGCAAAATCAGCAAACCGAGGATTGGCCCGATCCCCCCTACGTTCTACCAATCCTGTTACCG
CAACCCTCGATCTGATCCGATCTTAGACTGGAAATGAACTCTGTATGCTTAGACTGGGGATGAAC
TCCGTATGCCTAAGTCAACCCATGAAAAGAGTGTGCAGGCGCTCAGCCGGCCAGAGAGGCATAAT
ACGCAAGCCGGGGATCAGCCCAGTCCCCCTCTACGTGCTGTCGACCCTCGGTGCGACTGGGGATT
AGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGCAGGCACTCAACCGA
CGGAGAGGCAAAATACGCAAGTCAAGGATCGACCCGGTCCCTCCTACATGCTACCGATCCTGCTA
CTAGTCCTACTGCCGCAACCCTCGGTTCGATTCGATCTTAGACTGGGAATGAACTTCAATGCTTA
GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCACTCAGTCGAC
CAGAGAGGCAGAATGCGCAAGTCAGGGACAAGCCCGATCCCCCCCTACATGCTGTCGATCTTGCT
ACTGGTCCAGCTACAGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCT
TAGACATGGAATAAACTATGCATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTAAGCTG
GCCGGAGAAGCATAATACGTAAGTCGGAGATTGA
Found at i:1253059 original size:197 final size:195
Alignment explanation
Indices: 1252585--1253109 Score: 578
Period size: 197 Copynumber: 2.7 Consensus size: 195
1252575 TGGCTGGGGA
*
1252585 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAACC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCC
* * * * * *
1252650 GACGGAGAGGCAAAATACGCAAG-TCAAGGATCGACCCGTTCCCCCTACGTGCTGCCGATCCTGC
66 GCCGAAGAGGCAGAATGCGCAAGCTCAAGGATCAACCCGTCCCCCCTACGTGCTGCCGATCCTGC
* * * * * * *
1252714 TACTAGTCCTACTGTCGCAACCCTCGGTCTGATTCGATCTTAGATTGGGAATGAACTCTGCATGC
131 TACTAGTCCTACTGCCACAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGCATGC
* * * *
1252779 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATTCGAGCACTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG-C
* * * *
1252844 GGCC-AGAGAGGTAGAATGCGCAAGCT-AGGGA-CAAGCCCGATCCCCTCCTACGTGCTGTCGAT
65 CGCCGA-AGAGGCAGAATGCGCAAGCTCAAGGATCAA-CCCG-TCCCC-CCTACGTGCTGCCGAT
* * *
1252906 CTTGCTACTGGTCC-AGCTGCCACAACCCTAGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
126 CCTGCTACTAGTCCTA-CTGCCACAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCC
*
1252970 GTATGC
190 GCATGC
* * * ** *
1252976 TTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTTAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCC
* * * * *
1253041 AGCCGAAAAGGCAGAATGCGTAAGC-CAAAGACCAACGCAGTCCCCCCTACGTGCTGTCC-ATCC
66 -GCCGAAGAGGCAGAATGCGCAAGCTCAAGGATCAAC-CCGTCCCCCCTACGTGCTG-CCGATCC
*
1253104 TACTAC
128 TGCTAC
1253110 CAAAACCCTT
Statistics
Matches: 272, Mismatches: 46, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
194 60 0.22
195 26 0.10
196 26 0.10
197 154 0.57
198 6 0.02
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.20
Consensus pattern (195 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGCC
GCCGAAGAGGCAGAATGCGCAAGCTCAAGGATCAACCCGTCCCCCCTACGTGCTGCCGATCCTGC
TACTAGTCCTACTGCCACAACCCTAGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGCATGC
Found at i:1253501 original size:26 final size:26
Alignment explanation
Indices: 1253450--1253502 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1253440 CTGGTCTGAT
*
1253450 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
1253476 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
1253502 C
1 C
1253503 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:1254028 original size:26 final size:26
Alignment explanation
Indices: 1253999--1254051 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1253989 CCGGTCTGAT
*
1253999 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATAAACTCCGTATG
*
1254025 CTTAGACATGGAATAAACTCTGTATG
1 CTTAGACATGGAATAAACTCCGTATG
1254051 C
1 C
1254052 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCGTATG
Found at i:1254131 original size:197 final size:196
Alignment explanation
Indices: 1253633--1254138 Score: 610
Period size: 197 Copynumber: 2.6 Consensus size: 196
1253623 TCTGACTGGG
* *
1253633 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
1253698 CC-GACGGAGAGGCAAAATACGCAAGTCAAGGATCGACCCG-TTCCCCC-TACGTGCTGCCGATC
66 CCGGCCGAAGAGGCAGAATGCGCAAG-CAAGGATCGGCCCGATCCCCCCTTACATGCTGCCGATC
* * * *
1253760 CTGTTACTGGTCCTACTGTCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGC
130 CTGCTACTGGTCCTACTGCCACAACCCTAGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGC
1253825 AT
195 AT
* * *
1253827 GCTTAGACATGGAATGAACT-TCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGAGCCCTCA
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCA
* * * *
1253891 GTCGGCC-AGAGAGGCAGAATGCGCAAGCTAGGGA-CAAGCCCGATCCCCCCTTACATGCTGTCG
65 GCCGGCCGA-AGAGGCAGAATGCGCAAGC-AAGGATC-GGCCCGATCCCCCCTTACATGCTGCCG
* * *
1253954 ATCTTGCTACTGGTCCTGCTGCCACAACCCTAGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
127 ATCCTGCTACTGGTCCTACTGCCACAACCCTAGGTCCGATCTGATCTTAGACTGGGAATGAACTC
*
1254019 CGTAT
192 CGCAT
* * * ** *
1254024 GCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAAGGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* ** *
1254089 CCGGCCGAAAAGGCAGAATGCATAAGCCGAGGATCGGCCCGATCCCCCCT
66 CCGGCCGAAGAGGCAGAATGCGCAAG-CAAGGATCGGCCCGATCCCCCCT
1254139 ATGAGCTGTC
Statistics
Matches: 262, Mismatches: 39, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
194 62 0.24
195 26 0.10
196 6 0.02
197 164 0.63
198 4 0.02
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (196 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGGCCGAAGAGGCAGAATGCGCAAGCAAGGATCGGCCCGATCCCCCCTTACATGCTGCCGATCC
TGCTACTGGTCCTACTGCCACAACCCTAGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGCA
T
Found at i:1254372 original size:159 final size:158
Alignment explanation
Indices: 1254024--1254399 Score: 398
Period size: 158 Copynumber: 2.4 Consensus size: 158
1254014 AACTCCGTAT
* * * * *
1254024 GCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAAGGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAGAAGCGTGCGGGCGCTGAG
* * * *
1254089 CCGGCCGAAAAGGCAGAATGCATAAGCCGAGGATCGGCCCGATCCCCCCTATGAGCTGTCGATCC
66 CCGGCCGAAAAGGCAGAATACACAAGCCGAGGATCGACCCGATCCCCCCTACGAGCTGTCGATCC
* * *
1254154 TGCTGCCAAAACCCTCGGTCCGATCTGA
131 CGCTGCCAAAACCCTCGATCCGAGCTGA
* ** ** * *
1254182 TCTTAGAC-TGGGAATGAACTCTGTACACCTAAGTTAACCCACGAAATAAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAGAAGCGTGCGGGCGCTGA
* * * * * * * * *
1254246 GCTGGCCGGAGAGGTATAATACGCAAGCCGGGGATTGACCCGATCCCCCTCTACGTGCTGTCGAT
65 GCCGGCCGAAAAGGCAGAATACACAAGCCGAGGATCGACCCGATCCCCC-CTACGAGCTGTCGAT
* *
1254311 CCCGCTGCCATAACCCTCGATCCG-GCTAGG
129 CCCGCTGCCAAAACCCTCGATCCGAGCT-GA
** *
1254341 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGTAAAG-GGCGTGCGGGC
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACG-AAAGAAGCGTGCGGGC
1254400 ACTCAACCGG
Statistics
Matches: 173, Mismatches: 40, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
157 1 0.01
158 90 0.52
159 78 0.45
160 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAGAAGCGTGCGGGCGCTGAG
CCGGCCGAAAAGGCAGAATACACAAGCCGAGGATCGACCCGATCCCCCCTACGAGCTGTCGATCC
CGCTGCCAAAACCCTCGATCCGAGCTGA
Found at i:1254437 original size:159 final size:156
Alignment explanation
Indices: 1254024--1254440 Score: 406
Period size: 159 Copynumber: 2.6 Consensus size: 156
1254014 AACTCCGTAT
* * * *
1254024 GCTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAAGGAGCGTGCGGGTGCTTAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAGG-GCGTGCGGGCGCTCAG
* * * * * *
1254089 CCGGCCGAAAAGGCAGAATGCATAAGCCGAGGATCGGCCCGATCCCCCCTATGAGCTGTCGATCC
65 CCGGCAG-AGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTACGAGCTGTCGATCC
* * *
1254154 TGCTGCCAAAACCCTCGGTCCGATCTGA
129 CGCTGCCAAAACCCTCGATCCGAGCTGA
* ** ** ** * *
1254182 TCTTAGAC-TGGGAATGAACTCTGTACACCTAAGTTAACCCACGAAATAAGCGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACGAAA-GGGCGTGCGGGCGCTCA
* * * * * * * *
1254246 GCTGGCCGGAGAGGTATAATACGCAAGCCGGGGATTGACCCGATCCCCCTCTACGTGCTGTCGAT
64 GCCGG-CAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCC-CTACGAGCTGTCGAT
* *
1254311 CCCGCTGCCATAACCCTCGATCCG-GCTAGG
127 CCCGCTGCCAAAACCCTCGATCCGAGCT-GA
** * *
1254341 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGTAAAGGGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACG-AAAGGGCGTGCGGGCGCTCAG
*
1254406 CCGGCTAGAGAGGCAGAATGCGTAAGTCGGGGATC
65 CCGGC-AGAGAGGCAGAATGCGTAAGCCGGGGATC
1254441 AGCCTGGCCC
Statistics
Matches: 200, Mismatches: 51, Indels: 15
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.00
158 87 0.44
159 108 0.54
160 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.19
Consensus pattern (156 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAAGGGCGTGCGGGCGCTCAGC
CGGCAGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTACGAGCTGTCGATCCCG
CTGCCAAAACCCTCGATCCGAGCTGA
Found at i:1255549 original size:26 final size:26
Alignment explanation
Indices: 1255513--1255565 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1255503 CTGGTCTGAT
1255513 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
1255539 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1255565 C
1 C
1255566 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1255834 original size:343 final size:342
Alignment explanation
Indices: 1255296--1255934 Score: 902
Period size: 343 Copynumber: 1.9 Consensus size: 342
1255286 GTCAGAGATA
* * * * * *
1255296 GGCCCAGTCCCCCTCTACGTGCTGTCCGTCCTGCTGCCATAATCTCGGTCCGGCTGGGGCTTAGA
1 GGCCCAGTCCCCCTCTACGTGCTGTCAGTCCCGCTGCCACAACCTCGATCCGACTGGGGCTTAGA
* * * * *
1255361 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCCCAGCATACCG
66 CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACCAAGCAGACCG
*
1255426 GAGAGGCAGAATGCGTAAGCCGAGGATCGACCTACTCCCCCCTGAGTACTACCAATCCTGCTGTC
131 GAGAGGCAGAATGCGTAAGCCGAGGATCGACCCACTCCCCCCTGAGTACTACCAATCCTGCTGTC
* * * * *
1255491 GTAACCCTCGG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
196 GCAACCCTCGGTTC-AGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGA
*
1255555 ACTCCGTATGCCAAAGTCAACCCATGAAACAAGCGTGTAGGCACTGAGCCGGTCGGAAAGGCATA
260 ACTCCATATGCCAAAGTCAACCCATGAAACAAGCGTGTAGGCACTGAGCCGGTCGGAAAGGCATA
1255620 ATGCGTAAGCTGTGGATC
325 ATGCGTAAGCTGTGGATC
*
1255638 GGCCCGGTCCCCCTCTACGTGCTGTCAGTCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAG
1 GGCCCAGTCCCCCTCTACGTGCTGTCAGTCCCGCTGCCACAA-CCTCGATCCGACTGGGGCTTAG
* * * * *
1255703 ACATGGAATGAACTCCCTATGCCTAAGCCAACGCACGAAACGGGTGTGCAGGCACTAAGCCGACT
65 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACCAAGCAGACC
* * * * * ** * * **
1255768 GGAGAGGCAGAATGTGTAGGTCGAGGATTGGCCCGGTCCCCCCTGCGTGCTGTCAATCCTGCTGT
130 GGAGAGGCAGAATGCGTAAGCCGAGGATCGACCCACTCCCCCCTGAGTACTACCAATCCTGCTGT
*
1255833 CGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGA
195 CGCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGA
* * *
1255898 ACTCCATATGCCTAAGTTAACCCATGAAACGAGCGTG
260 ACTCCATATGCCAAAGTCAACCCATGAAACAAGCGTG
1255935 CGGACGCTCA
Statistics
Matches: 256, Mismatches: 39, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
342 38 0.15
343 216 0.84
344 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (342 bp):
GGCCCAGTCCCCCTCTACGTGCTGTCAGTCCCGCTGCCACAACCTCGATCCGACTGGGGCTTAGA
CATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCAGGCACCAAGCAGACCG
GAGAGGCAGAATGCGTAAGCCGAGGATCGACCCACTCCCCCCTGAGTACTACCAATCCTGCTGTC
GCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAA
CTCCATATGCCAAAGTCAACCCATGAAACAAGCGTGTAGGCACTGAGCCGGTCGGAAAGGCATAA
TGCGTAAGCTGTGGATC
Found at i:1255882 original size:158 final size:159
Alignment explanation
Indices: 1255538--1255882 Score: 358
Period size: 159 Copynumber: 2.2 Consensus size: 159
1255528 AACTCCATAT
* * * * *
1255538 GCTTAGACTGGGGATGAACTCCGTATGCCAAAGTCAACCCATGAAACAAGCGTGTAGGCACTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACAAGCGTGCAGGCACTAAG
* * * *
1255603 CCGGTCGGAAAGGCATAATGCGTAAGCTGTGGATCGGCCCGGTCCCCCTCTACGTGCTGTCAGTC
66 CCGCTCGGAAAGGCAGAATGCGTAAGCTGAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCAATC
* * *
1255668 CCGCTGCCACAACCCTCGATCCGACTGGG
131 CCGCTGCCACAACCCTCGATCAGACTCGA
* * * ** *
1255697 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACGCACGAAACGGGTGTGCAGGCACTAA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACAAGCGTGCAGGCACTAA
* * * * *
1255761 GCCGACT-GGAGAGGCAGAATGTGT-AGGTCGAGGATTGGCCCGGTCCCCC-CTGCGTGCTGTCA
65 GCCG-CTCGGAAAGGCAGAATGCGTAAGCT-GAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCA
* * * * *
1255823 ATCCTGCTGTCGCAACCCTCGGTTCAGTC-CGA
128 ATCCCGCTGCCACAACCCTC-GATCAGACTCGA
*
1255855 TCTTAGACTGGGAATGAACTCCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
1255883 TTAGACTAGG
Statistics
Matches: 151, Mismatches: 30, Indels: 11
0.79 0.16 0.06
Matches are distributed among these distances:
157 1 0.01
158 56 0.37
159 92 0.61
160 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (159 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACAAGCGTGCAGGCACTAAG
CCGCTCGGAAAGGCAGAATGCGTAAGCTGAGGATCGGCCCGGTCCCCCTCTACGTGCTGTCAATC
CCGCTGCCACAACCCTCGATCAGACTCGA
Found at i:1255885 original size:26 final size:26
Alignment explanation
Indices: 1255856--1255908 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1255846 TCAGTCCGAT
* *
1255856 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
1255882 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
1255908 C
1 C
1255909 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:1256921 original size:26 final size:26
Alignment explanation
Indices: 1256882--1256935 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
1256872 GGTTCGATCT
1256882 TAGACTGAGAATGAACTCCGTATGCC
1 TAGACTGAGAATGAACTCCGTATGCC
* * **
1256908 TAGACTGGGGATGAACTTTGTATGCC
1 TAGACTGAGAATGAACTCCGTATGCC
1256934 TA
1 TA
1256936 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
TAGACTGAGAATGAACTCCGTATGCC
Found at i:1257128 original size:26 final size:26
Alignment explanation
Indices: 1257090--1257142 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1257080 CCGATCCGAT
*
1257090 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1257116 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1257142 C
1 C
1257143 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1257417 original size:159 final size:159
Alignment explanation
Indices: 1257116--1257616 Score: 371
Period size: 159 Copynumber: 3.2 Consensus size: 159
1257106 ACTCTGTATG
* * * *
1257116 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCTCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCATGTGGGCTCTCAAC
* * *
1257181 CGGTCGGAGAGGCAGAATGCATAAGCCAGGGACTGACCCGATCCCCCCCTGCGTGCTGTCGATCT
66 CGATCGGAGAGGCAGAATGCACAAGCCAGGGACTGACCCGATCCCCCCCTGCGTGCTGTCGATCC
** * *
1257246 TGCTACCGCAACCCTTGGTCTGATCTGAT
131 CACTACCACAACCCTCGGTCTGATCTGAT
* * *
1257275 CTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGAAACGAGCAT-TCTGGCAT-TGA
1 CTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCATGT-GGGC-TCTCA
* * * * * * * * * *
1257338 GCCGATCGGATATGCATAATGCGCAAGCCGGGGA-TCGGCCTGATCCCCCTCTGCGTGCTGTCGG
64 ACCGATCGGAGAGGCAGAATGCACAAGCCAGGGACT-GACCCGATCCCCCCCTGCGTGCTGTCGA
* * **
1257402 TCCCACTGCCACAACCCTCGGTC-CAGT-TGGGG
128 TCCCACTACCACAACCCTCGGTCTGA-TCT-GAT
* * ** * *
1257434 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACG-G-GTGTCCGGGCGCTC
1 CTTAGAC-TGGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCATGT--GGGCTCTC
** * ** * * * *
1257496 AGTCGACCGGAGAGGCAGAATGCGTAAGTC-GGG-CATCGATCTCG-T-CCCCCTTACGTGCTGT
63 AACCGATCGGAGAGGCAGAATGCACAAGCCAGGGAC-T-GA-CCCGATCCCCCCCTGCGTGCTGT
*** *
1257557 CGATCTTGCTACCACAACCCTCGGTCT-AGTTTGAT
125 CGATCCCACTACCACAACCCTCGGTCTGA-TCTGAT
*
1257592 CTTAGACTGGGAATGAACGCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
1257617 ACTTAGATTG
Statistics
Matches: 268, Mismatches: 59, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
157 2 0.01
158 68 0.25
159 194 0.72
160 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.22
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCATGTGGGCTCTCAAC
CGATCGGAGAGGCAGAATGCACAAGCCAGGGACTGACCCGATCCCCCCCTGCGTGCTGTCGATCC
CACTACCACAACCCTCGGTCTGATCTGAT
Found at i:1257628 original size:26 final size:26
Alignment explanation
Indices: 1257592--1257642 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1257582 CTAGTTTGAT
1257592 CTTAGACTGGGAATGAACGCCGTATA
1 CTTAGACTGGGAATGAACGCCGTATA
* * *
1257618 CTTAGATTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACGCCGTAT
1257643 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATA
Found at i:1258245 original size:184 final size:185
Alignment explanation
Indices: 1257931--1258360 Score: 564
Period size: 184 Copynumber: 2.3 Consensus size: 185
1257921 CTGTCGATCC
* * * ** *
1257931 TGCTGCT-AGTCCTGCTACTGCAACCCTCGGTTCGATCTGATCTTAGACTAAGAATGAACTCCGT
1 TGCTGCTGA-TCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCAT
*
1257995 ATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTACGGACGCTC
65 ATGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTACGGACGCTC
* * *
1258060 AGCCAACCGGAGAAGTAGAATGCATAAGTC-AGGGATC-GGCCTGATCCCCCATT-CG
130 AGCCAACCAGAGAAGTAGAATGCATAAGTCGA-GGATCAGCCCAG-TCCCCCATTACG
* *
1258115 TGCTGCTGATCCTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATAAACTCCATA
1 TGCTGCTGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATA
* * * * *
1258180 TGCTTAGACATCGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
66 TGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTACGGACGCTCA
** * *
1258245 GCCTGCCAGAGAGGTAGAATGCATAAGTCGAGGATCAGCCCAGTCCCCCCTTACG
131 GCCAACCAGAGAAGTAGAATGCATAAGTCGAGGATCAGCCCAGTCCCCCATTACG
* * **
1258300 TGCTG-TCGATCCTACTGCCGCAACCCTCGATCCGATCCAATCTTAGACTGGGAATGAACTC
1 TGCTGCT-GATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
1258361 TGTATGCCTA
Statistics
Matches: 214, Mismatches: 27, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
184 153 0.71
185 61 0.29
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (185 bp):
TGCTGCTGATCCTGCTACCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCATA
TGCTTAGACATCGAATGAACTCCGTATGCCTAAGCCAACACACGAAACGAGCGTACGGACGCTCA
GCCAACCAGAGAAGTAGAATGCATAAGTCGAGGATCAGCCCAGTCCCCCATTACG
Found at i:1258477 original size:159 final size:159
Alignment explanation
Indices: 1258192--1258611 Score: 433
Period size: 159 Copynumber: 2.6 Consensus size: 159
1258182 CTTAGACATC
* *
1258192 GAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGA
1 GAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCGCTCAGCCTGCCAGAGA
* * *
1258257 GGTAGAATGCATAAGTCGAGGATCAGCCCAGTCCCCCCTTACGTGCTGTCGATCCTACTGCCGCA
66 GGCAGAATGCATAAGTCGAGGATCAGCCCAGTCCCCCCTTACGTGCTGTCGATCCCACTGCCACA
*
1258322 ACCCTCGATCCGATCCAATCTTAGACTGG
131 AACCTCGATCCGATCCAATCTTAGACTGG
* * *
1258351 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCATGCGAGCGTTGAG-CTGGCC-GAA
1 GAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCGCTCAGCCT-GCCAG-A
* * * *
1258414 GAGGCATAATGCGTAAGTCGAGGATCAGCCC-GAT-ACCCCTCTACGTGCTGTCGATCCCGCTGC
64 GAGGCAGAATGCATAAGTCGAGGATCAGCCCAG-TCCCCCCT-TACGTGCTGTCGATCCCACTGC
* **** *
1258477 CACAAACCTCGATCC-AGCTGGGGCTTGGACAT-G
127 CACAAACCTCGATCCGATC-CAATCTTAGAC-TGG
** * * * * * *
1258510 GAATGAACTCCCTTTGCCTAAGCCAACCCATGAAATGGGCATGCGGGCGCTCAGCC-GATCGGAG
1 GAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCGCTCAGCCTG-CCAGAG
* * * *
1258574 AGGCAGAATGCGTAAGCCGGGGATC-GACCCGGTCCCCC
65 AGGCAGAATGCATAAGTCGAGGATCAG-CCCAGTCCCCC
1258612 ATGCATGCTG
Statistics
Matches: 216, Mismatches: 33, Indels: 23
0.79 0.12 0.08
Matches are distributed among these distances:
158 13 0.06
159 196 0.91
160 7 0.03
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
GAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCATGCGAGCGCTCAGCCTGCCAGAGA
GGCAGAATGCATAAGTCGAGGATCAGCCCAGTCCCCCCTTACGTGCTGTCGATCCCACTGCCACA
AACCTCGATCCGATCCAATCTTAGACTGG
Found at i:1259090 original size:157 final size:159
Alignment explanation
Indices: 1258843--1259135 Score: 387
Period size: 157 Copynumber: 1.9 Consensus size: 159
1258833 CCAGCTCGGG
* * ** *
1258843 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTATGGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAGC
* * *
1258908 CAGCCGGAGAGGCAAAATGGGCAAGCCAACGA-CAGGTCCGA-CCCCC-CTGCGTGCTGTCGATC
66 CAGCCGAAGAGGCAAAATGCGCAAGCCAACGATC-GGCCCGATCCCCCACTGCGTGCTGTCGATC
1258970 CTGCTGCCACAACCCTCGGTCCAATCCGAT
130 CTGCTGCCACAACCCTCGGTCCAATCCGAT
* * * * *
1259000 CTTAGAC-TAGGAATGAACTCCATATGCCTAAGTCATCCCACGAAATGAGCGTGCAGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAG
* * * *
1259064 CCAGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGGCCCTATCCCCCACTGCGTGCTGTCGATC
65 CCAGCCGAAGAGGCAAAATGCGCAAGCCAACGATCGGCCCGATCCCCCACTGCGTGCTGTCGATC
1259129 CTGCTGC
130 CTGCTGC
1259136 TGGTCCTTCT
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
156 1 0.01
157 85 0.74
158 6 0.05
159 23 0.20
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACAGGCACTCAGC
CAGCCGAAGAGGCAAAATGCGCAAGCCAACGATCGGCCCGATCCCCCACTGCGTGCTGTCGATCC
TGCTGCCACAACCCTCGGTCCAATCCGAT
Found at i:1259499 original size:158 final size:157
Alignment explanation
Indices: 1259197--1259697 Score: 409
Period size: 158 Copynumber: 3.2 Consensus size: 157
1259187 ACTCCGTATG
* * * * * * *
1259197 CTTAGACATGAAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * * * * * * ** ***
1259262 CGATCGGATAGGCAGAATGCGTAAGTCAGGGA-CTGACCCGGTC-CCTCCTATGTGCTGTTGATC
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GATCTGATCACC-CCTGCGTGCTGCCAATC
* **
1259325 CTACTACCGTAACCCTCGGTCCAGTCTGAT
129 CAACTACCACAACCCTCGGTCC-GTCTGAT
* * * * * *
1259355 CTTAGACTA-GGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAACGTGTGGGCGCTGAG
1 CTTAGAC-AGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAG
* * * * * *
1259419 CCGA-CGGAGAGGCATAATGCGCAAGCTGGGGATCGA-CTCGTTCCCCCTCTTCGTGCTGCCAGT
65 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCT-GATCACCC-CTGCGTGCTGCCAAT
* * **
1259482 CCAACTACCACAACCCTCAGTCCGACTGGGG
128 CCAACTACCACAACCCTCGGTCCGTCT-GAT
** * ** * *
1259513 CTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGTGCTCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * * *
1259578 CGATCGGAGAGGTAGAATTCGCAAGCCGGGGATCGATCTGATCACCCCTGCGTGCTGTCAATCCT
66 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCTGATCACCCCTGCGTGCTGCCAATCCA
* * ** *
1259643 GCTGCCGTAACCCTCGATCCGATCTGAT
131 ACTACCACAACCCTCGGTCCG-TCTGAT
1259671 CTTAGACAGGGAATGAACTCCGTATGC
1 CTTAGACAGGGAATGAACTCCGTATGC
1259698 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 67, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 32 0.12
158 194 0.73
159 37 0.14
160 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (157 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAACGTGCGGGCGCTCAGC
CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGATCTGATCACCCCTGCGTGCTGCCAATCCA
ACTACCACAACCCTCGGTCCGTCTGAT
Found at i:1259700 original size:26 final size:26
Alignment explanation
Indices: 1259671--1259723 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1259661 CCGATCTGAT
1259671 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* * *
1259697 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
1259723 C
1 C
1259724 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:1260871 original size:158 final size:158
Alignment explanation
Indices: 1260381--1260871 Score: 522
Period size: 158 Copynumber: 3.1 Consensus size: 158
1260371 TTAGACATTC
* * * *
1260381 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGTCGACCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAG
* * * *
1260446 GTAGAATGGGCAAGCCGGGGATCAGCTCGGTCCCCCCTGCATGCTATCGATCCTGCTGCCGCAAC
66 GCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAAC
* ** * *
1260511 CCTCCG-TCCGGTCCAATCTTAAACTGGG
131 CCT-CGATCTGGTCTGATCTTAGACTGTG
* ** * * * * * *
1260539 AATGAACTCCGTATGCATAAGTTAACCTATGAAACGAGCGTGCGGGCGCTGAACCGGTCGAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAG
* * * * * * * * * *
1260604 GCATAATACGCAAGCCGGGGATC-GACCCGATCCTTCTCTGAGTGCTGTCGGTCCCGCTGCCACA
66 GCAGAATGCGCAAGCCGGGGATCAG-CCCGGTCC-CCCCTGCGTGCTATCGATCCTGCTGCCGCA
* **
1260668 ACCCTTGATCTGG-CTGGGGCTTAGACT-TGG
129 ACCCTCGATCTGGTCT-GATCTTAGACTGT-G
* * *
1260698 AATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAGCCGGCCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAG
* * * * *
1260763 GCAGAATGTGCAAGCTGAGGATCAGCCCGGTCCCCCCTGCGTGCTACCGATCCTGCTGTCGCAAC
66 GCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAAC
1260828 CCTCGATCTGGTCTGATCTTAGACTGTG
131 CCTCGATCTGGTCTGATCTTAGACTGTG
1260856 AATGAACTCCGTATGC
1 AATGAACTCCGTATGC
1260872 TTAGACTGGG
Statistics
Matches: 259, Mismatches: 66, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
157 1 0.00
158 137 0.53
159 120 0.46
160 1 0.00
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (158 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAG
GCAGAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGCCGCAAC
CCTCGATCTGGTCTGATCTTAGACTGTG
Found at i:1260886 original size:26 final size:26
Alignment explanation
Indices: 1260845--1260898 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
1260835 CTGGTCTGAT
*
1260845 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1260871 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1260897 CT
1 CT
1260899 AAAGTCAACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1261383 original size:74 final size:74
Alignment explanation
Indices: 1261262--1261429 Score: 309
Period size: 74 Copynumber: 2.3 Consensus size: 74
1261252 GTCGGTCCGG
*
1261262 TCTTACACTGGGAATGAACTGCGTACTGTCGATCCTGCTGCTGGTCCTGCTGTCGTAACCCTTGG
1 TCTTAGACTGGGAATGAACTGCGTACTGTCGATCCTGCTGCTGGTCCTGCTGTCGTAACCCTTGG
**
1261327 TCCATCTGA
66 TCCATCCAA
1261336 TCTTAGACTGGGAATGAACTGCGTACTGTCGATCCTGCTGCTGGTCCTGCTGTCGTAACCCTTGG
1 TCTTAGACTGGGAATGAACTGCGTACTGTCGATCCTGCTGCTGGTCCTGCTGTCGTAACCCTTGG
1261401 TCCATCCAA
66 TCCATCCAA
1261410 TCTTAGACTGGGAATGAACT
1 TCTTAGACTGGGAATGAACT
1261430 CTGTATGCTT
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 91 1.00
ACGTcount: A:0.18, C:0.27, G:0.24, T:0.30
Consensus pattern (74 bp):
TCTTAGACTGGGAATGAACTGCGTACTGTCGATCCTGCTGCTGGTCCTGCTGTCGTAACCCTTGG
TCCATCCAA
Found at i:1261449 original size:26 final size:26
Alignment explanation
Indices: 1261411--1261463 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1261401 TCCATCCAAT
* *
1261411 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
1261437 CTTAAACTTGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
1261463 C
1 C
1261464 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:1262902 original size:26 final size:26
Alignment explanation
Indices: 1262873--1262925 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1262863 CCGATCCAAT
1262873 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1262899 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1262925 C
1 C
1262926 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1263363 original size:966 final size:963
Alignment explanation
Indices: 1261600--1263417 Score: 2699
Period size: 966 Copynumber: 1.9 Consensus size: 963
1261590 CCGATCTTAC
* * * *
1261600 ACTGGGAATGAACACCGTATGCCTAAGTCAACCCATTAAACGAGCATGCGAGCGTTGAGTCGGCC
1 ACTGGGAATGAACACCGTATGCCTAAGTCAACCCACTAAACGAGCATGCGAGCGCTGAGCCGACC
* * ** *
1261665 GGAGAGGCATAATGCACAAGTCGAGGATCGGTCCAGTCCCCCTCTACGTGCTACCGGTCCCGCTG
66 GGAGAGGCATAATACACAAGCCGAGGATCGACCCAGTCCCCCTCTACGTGCTACCGGTCCCACTG
*
1261730 CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAATCCAACCCAC
131 CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAC
* ** * ** **
1261795 GAAATGGGCGTACGGGTGCTCAGCCGGCTGAAAAGGTAGAATGCGCAAGCCGGGGATTGGTCCGG
196 GAAACGGGCGTACGGACGCTCAACCGGCTGAAAAGGTAGAATGCGCAAGCCGGGGAACGGTCCCA
* ** * ** * **
1261860 TCCCTCTTACGTGCTGTCGATCCTGCTGTCGCAACCTTCAGTCCGGTCTGATCTTAGACTGGAAA
261 TCCCTCCTACGTGCTACCGATCCTACTACCGCAACCTTCAGTCCGATCCAATCTTAGACTGGAAA
* * *
1261925 TGAACTTCGTATGCTTAGACTGGGGATGTCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTA
326 TGAACTCCGTATGCTTAGACTGGGGATGACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTA
* *
1261990 CGGGCGCTCAGCCGACCAGAGAGGCAGGATGCGTAAGCCGGGGATCGAACGGGTGGTAGGTGGGT
391 CGGGCGCTCAGCCGACCAAAGAGGCAGGATGCATAAGCCGGGGATCGAACGGGTGGTAGGTGGGT
**
1262055 TCAAGCACATCTTCATATTTCTGCCATTCCAATGCCATTTTTATTTCTTGTAAATTCATACAATG
456 TCAAGCACATCTTCATATTTCTGCCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
1262120 GTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGATGACCCATTTTCTATTTTTCACGATTTTC
521 GTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGATGACCCATTTTCTATTTTTCACGATTTTC
* * *
1262185 AAAACTTTTTACGGTTCGAGATTTGTTAAAATTTTTTTAGAAAGATTTTTGTCCCCAAATTTGGT
586 AAAACTTTTTACGGTTAGAGATTTGTTAAAATTTTTTTACAAAGAGTTTTGTCCCCAAATTTGGT
* *
1262250 AGAGGTGATCCTTGCATTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAGTTGGAGA
651 AGAGGCGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAGTTGGAGA
* *
1262315 AGATTTTGCTACCATTTGAAGAAAATGTCCCCATTTCAGACAATTTAATGGCTACTGGCAGCAAA
716 AGATTTTGCTACCATTTGAAGAAAATGCCCCCATTTCAGACAATTCAATGGCTACTGGCAGCAAA
*
1262380 CCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGCGG
781 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGCGG
1262445 CCAATATGCGGGCGCTCAGCCAGCCGAAGAGGTAGAATGTGCAAGCCGGGGATCGGCTCGATCCC
846 CCAATATGCGGGCGCTCAGCCAGCCGAAGAGGTAGAATGTGCAAGCCGGGGATCGGCTCGATCCC
1262510 TCCTACGTGCTGTCAATCCTGCTACCGTAACCCTCGGTCCAGTTCCATCTTTG
911 TCCTACGTGCTGTCAATCCTGCTACCGTAACCCTCGGTCCAGTTCCATCTTTG
* ** * *
1262563 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGTGTGGGGGCGCTGAGCCGACC
1 ACTGGGAATGAACACCGTATGCCTAAGTCAACCCACTAAACGAGCATGCGAGCGCTGAGCCGACC
* * * **
1262628 GGAGAGGGATAATACGCAAGCCGAGGATCGACCC-GATCCCCCTCTGCGTGCTGTCGGTCCCACT
66 GGAGAGGCATAATACACAAGCCGAGGATCGACCCAG-TCCCCCTCTACGTGCTACCGGTCCCACT
* * * *
1262692 GCCACCACCCTCATTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTAT-GCTAAGCCAACCCA
130 GCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCA
* * * * * *
1262756 TGAAACGGGCGTGCGGACGCTCAACC-GATCGGAGAGGTAGAATGCGCAAGTCGGGGAACGG-CC
195 CGAAACGGGCGTACGGACGCTCAACCGGCT-GAAAAGGTAGAATGCGCAAGCCGGGGAACGGTCC
* * *
1262819 TCATCCC-CCTGCGTGCTACCGATCCTACTACCGTAACCCTTGA-TCCGATCCAATCTTAGACTG
259 -CATCCCTCCTACGTGCTACCGATCCTACTACCGCAA-CCTTCAGTCCGATCCAATCTTAGACTG
* *
1262882 GGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACAAAATGA
322 GAAATGAACTCCGTATGCTTAGACTGGGGATG-ACTCCGTATGCCTAAGTCAACCCACAAAACGA
1262947 GCG-AGCGGGCGCTCAGCCGACCAAAGAGGCAGGATGCATAAGCCGGGGATCGAACGGGTGGTGG
386 GCGTA-CGGGCGCTCAGCCGACCAAAGAGGCAGGATGCATAAGCCGGGGATCGAACGGGTGGT--
* * *
1263011 GTGGATGGGTTCAAGCACATGTTTATATTTCTG-CATTGCCAATGCCATTTTTATGGCTTGTAAA
448 -AGG-TGGGTTCAAGCACATCTTCATATTTCTGCCATT-CCAATGCCATTTTTATGGCTTGTAAA
1263075 TTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGATGACCCATTTTCTATTTT
510 TTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGATGACCCATTTTCTATTTT
* * * *
1263140 TCATGATTTTCAAAACTTTTTGCGGTTTAG-GATTTTTTAAAATTTTTTTTCAAAGAGTTTTGTC
575 TCACGATTTTCAAAACTTTTTACGG-TTAGAGATTTGTTAAAATTTTTTTACAAAGAGTTTTGTC
*
1263204 CCCAAATTTGGTAGAGGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
639 CCCAAATTTGGTAGAGGCGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
1263269 T-GAAAG-TGGAGAAGATTTTG-TGACCATTTGAA-AAAAGTGCCCCCATTTTAGACACTTCAAT
704 TCG--AGTTGGAGAAGATTTTGCT-ACCATTTGAAGAAAA-TGCCCCCATTTCAGACAATTCAAT
1263330 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
765 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
1263395 GATGAGGGATAGGGGGCCAATAT
830 GATGAGGGATAGGCGGCCAATAT
1263418 AAGGGCCAAG
Statistics
Matches: 761, Mismatches: 78, Indels: 29
0.88 0.09 0.03
Matches are distributed among these distances:
961 73 0.10
962 155 0.20
963 155 0.20
965 12 0.02
966 361 0.47
967 5 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (963 bp):
ACTGGGAATGAACACCGTATGCCTAAGTCAACCCACTAAACGAGCATGCGAGCGCTGAGCCGACC
GGAGAGGCATAATACACAAGCCGAGGATCGACCCAGTCCCCCTCTACGTGCTACCGGTCCCACTG
CCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAC
GAAACGGGCGTACGGACGCTCAACCGGCTGAAAAGGTAGAATGCGCAAGCCGGGGAACGGTCCCA
TCCCTCCTACGTGCTACCGATCCTACTACCGCAACCTTCAGTCCGATCCAATCTTAGACTGGAAA
TGAACTCCGTATGCTTAGACTGGGGATGACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTA
CGGGCGCTCAGCCGACCAAAGAGGCAGGATGCATAAGCCGGGGATCGAACGGGTGGTAGGTGGGT
TCAAGCACATCTTCATATTTCTGCCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCCTAAGCCTTCATGTGAAGTTTCGTGGCAAGATGACCCATTTTCTATTTTTCACGATTTTC
AAAACTTTTTACGGTTAGAGATTTGTTAAAATTTTTTTACAAAGAGTTTTGTCCCCAAATTTGGT
AGAGGCGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAGTTGGAGA
AGATTTTGCTACCATTTGAAGAAAATGCCCCCATTTCAGACAATTCAATGGCTACTGGCAGCAAA
CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGCGG
CCAATATGCGGGCGCTCAGCCAGCCGAAGAGGTAGAATGTGCAAGCCGGGGATCGGCTCGATCCC
TCCTACGTGCTGTCAATCCTGCTACCGTAACCCTCGGTCCAGTTCCATCTTTG
Found at i:1264020 original size:184 final size:185
Alignment explanation
Indices: 1263792--1264162 Score: 496
Period size: 184 Copynumber: 2.0 Consensus size: 185
1263782 TCTGATTGGG
* * * * * *
1263792 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCTAAGCCACGAAATGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAATGAGCGTCCAGGCACTCAG
*** * * *
1263857 CCGGTCGGAGAGGCAGAATGCATAAG-CTGAGGATTGGCCTAGTCC-CCCCTATGTGCTGTCGAT
66 CCAACCGGAGAGGCAGAATGCATAAGTC-GAGGATCGGCCCAGTCCACCCCTACGTGCTGTCGAT
* * * *
1263920 CCTGCTGCCGCAACCCTCGGT-CTGATCCGATCTTAGATTGGGAATGAACTCCATAT
130 CCTGCTGCCACAACCCTCAGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCATAT
*
1263976 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAATGAGCGTCCAGGCGCTCAG
1 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAATGAGCGTCCAGGCACTCAG
* * * * *
1264041 CCAACCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCGGTCCACCCCTGCGTGCTGTCGATC
66 CCAACCGGAGAGGCAGAATGCATAAGTCGAGGATCGGCCCAGTCCACCCCTACGTGCTGTCGATC
*
1264106 CTGCTGCCACAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
131 CTGCTGCCACAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
1264161 GC
1 GC
1264163 CTAAGTCAAC
Statistics
Matches: 161, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
184 92 0.57
185 67 0.42
186 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAATGAGCGTCCAGGCACTCAG
CCAACCGGAGAGGCAGAATGCATAAGTCGAGGATCGGCCCAGTCCACCCCTACGTGCTGTCGATC
CTGCTGCCACAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:1264232 original size:159 final size:159
Alignment explanation
Indices: 1263976--1264425 Score: 550
Period size: 159 Copynumber: 2.8 Consensus size: 159
1263966 AACTCCATAT
* * *
1263976 GCTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAATGAGCGTCCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* * * * *
1264041 CCAACCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCGGTCCACCCCTGCGTGCTGTCGATC
66 CCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCCACCCCTGCGTGCTGTCGATC
* *
1264106 CTGCTGCCACAACCCTCAGTCCAGTC-CGA
131 CTGCTGCCACAACCCTCAAT-CAGGCTCGA
* * * * *
1264135 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTACGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCA
* * *
1264199 GCCAGCCGGAGAGGCATAATGCGTAAGCCGGGGATTGGCTCGGTCC-CCCTCTGTGTGCTGTCGG
65 GCCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCCACCC-CTGCGTGCTGTCGA
* ** *
1264263 TCCCGCTGCCACAACCCTCAATTTGGCTGGA
129 TCCTGCTGCCACAACCCTCAATCAGGCTCGA
* * * ** **
1264294 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGTGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
* *
1264359 CC-GATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGGT-CACCCCTGCGTGCTGTCGAT
66 CCAG-CCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCCACCCCTGCGTGCTGTCGAT
1264422 CCTG
130 CCTG
1264426 GTACCGTAAC
Statistics
Matches: 245, Mismatches: 40, Indels: 13
0.82 0.13 0.04
Matches are distributed among these distances:
158 24 0.10
159 220 0.90
160 1 0.00
ACGTcount: A:0.22, C:0.30, G:0.29, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAG
CCAGCCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCCACCCCTGCGTGCTGTCGATC
CTGCTGCCACAACCCTCAATCAGGCTCGA
Found at i:1264480 original size:159 final size:156
Alignment explanation
Indices: 1263977--1264480 Score: 483
Period size: 159 Copynumber: 3.2 Consensus size: 156
1263967 ACTCCATATG
* * * * *
1263977 CTTAGACATGGAATGAACACCGTATGCCTAAGCCAACCCACGAAATGAGCGTCCAGGCGCTCAGC
1 CTTAGA-ATGGGATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * *
1264042 CAACCGGAGAGGTAGAATGCGTAAGTCGGGGATCGGCCCGGTCCACCCCTGCGTGCTGTCGATCC
65 C-ACCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGT-CACCCCTGCGTGCTGTCGATCC
1264107 TGCTGCCACAACCCTCAGTCC-AGTCCGAT
128 TGCTGCCACAACCCTCAGTCCGA-TCCGAT
* * * * * *
1264136 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTACGGGTGCTGAGC
1 CTTAGAATGGG-ATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* * * *
1264201 CAGCCGGAGAGGCATAATGCGTAAGCCGGGGATTGGCTCGGTCCCCCTCTGTGTGCTGTCGGTCC
65 CA-CCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCACCC-CTGCGTGCTGTCGATCC
* * ** * * *
1264266 CGCTGCCACAACCCTCAATTTG-GCTGGAG
128 TGCTGCCACAACCCTCAGTCCGATC-CGAT
* * * * ** **
1264295 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTGTGGGCATTCAGC
1 CTTAGA-ATGGGATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGC
* *
1264360 CGATCGGAGAGGCAGAATGCGCAAGCCGGGGATTGGCTCGGTCACCCCTGCGTGCTGTCGATCCT
65 C-ACCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCACCCCTGCGTGCTGTCGATCCT
* * ** *
1264425 GGTACCGTAACCCTAGCGGGTCCGATCCGAT
129 GCTGCCACAACCCT--C-AGTCCGATCCGAT
* *
1264456 CTTAG-GTGGGATGAACTTCATATGC
1 CTTAGAATGGGATGAACTCCATATGC
1264481 TTAGACTGGG
Statistics
Matches: 275, Mismatches: 59, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
158 34 0.12
159 226 0.82
160 5 0.02
161 9 0.03
162 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (156 bp):
CTTAGAATGGGATGAACTCCATATGCCTAAGCCAACCCACGAAATGAGCGTACGGGCGCTCAGCC
ACCGGAGAGGCAGAATGCGTAAGCCGGGGATTGGCTCGGTCACCCCTGCGTGCTGTCGATCCTGC
TGCCACAACCCTCAGTCCGATCCGAT
Found at i:1265836 original size:26 final size:26
Alignment explanation
Indices: 1265798--1265850 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1265788 CTGGTCTGAT
*
1265798 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
1265824 CTTAGAC-ATGGAATGAACTCCGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
1265850 C
1 C
1265851 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:1266089 original size:185 final size:184
Alignment explanation
Indices: 1265777--1266159 Score: 468
Period size: 185 Copynumber: 2.1 Consensus size: 184
1265767 CCTACTGCCA
* * * * * *
1265777 TAACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACATGGAATGAAC
1 TAACCCTCGGTCTGATCCGATCTGAGACTAGGAATGAACTCCGTATACTTAGACATGGAATGAAC
* * * *
1265842 TCCGTATGCCTAAGCCAACCCACGAAACGATCGTACGGGCGCTCAGCTGGCCAGAGAGGCAGAAT
66 TCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAACCGGCCAGAGAGGCAGAAT
* **
1265907 G-AGCAAGCTGGGGACCGACTCGATCCCCTCCTGTGTGCTG-TCGATCCTGCTACCG
131 GCA-CAAGCTGGGGACCGACCCGATCCCC-CCTGCATGCTGCT-GATCCTGCTACCG
*
1265962 TAACCCTCGGTCTGATCCGATCTGAGACTGGGAATGAACTCCGTATACTTAGAC-TGGAGATGAA
1 TAACCCTCGGTCTGATCCGATCTGAGACTAGGAATGAACTCCGTATACTTAGACATGGA-ATGAA
* * * * **
1266026 CTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAACCGATC-GAAGAGGCAGA
65 CTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAACCGGCCAG-AGAGGCAGA
* * * *
1266090 ATGCACAAGTTGGGGATCGACCCGATCCGCCCTGCATGCTGCTGATCCTGCTGCCG
129 ATGCACAAGCTGGGGACCGACCCGATCCCCCCTGCATGCTGCTGATCCTGCTACCG
*
1266146 CAACCCTCGGTCTG
1 TAACCCTCGGTCTG
1266160 GCTGGGGCTT
Statistics
Matches: 169, Mismatches: 25, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
184 39 0.23
185 129 0.76
186 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.21
Consensus pattern (184 bp):
TAACCCTCGGTCTGATCCGATCTGAGACTAGGAATGAACTCCGTATACTTAGACATGGAATGAAC
TCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAACCGGCCAGAGAGGCAGAAT
GCACAAGCTGGGGACCGACCCGATCCCCCCTGCATGCTGCTGATCCTGCTACCG
Found at i:1266266 original size:158 final size:158
Alignment explanation
Indices: 1266021--1266314 Score: 383
Period size: 158 Copynumber: 1.9 Consensus size: 158
1266011 TAGACTGGAG
* * * *
1266021 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAACCGATCGAAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGATCGAAGAGG
*
1266086 CAGAATGCACAAGTTGGGGATCGACCCGATCCGCCCTGCATGCTG-CTGATCCTGCTGCCGCAAC
66 CAGAATGCACAAGTTGGGGATCGACCCGATCCCCCCTGCATGCTGTC-GATCCTGCTGCCGCAAC
1266150 CCTCGGTCTGGCTGGGGCTTAGACATGCA
130 CCTCGGTCTGGCTGGGGCTTAGACATGCA
* * * * * *
1266179 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCTCTCAGCCGGTCGGAGAGG
1 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGATCGAAGAGG
* ** * ** * * * *
1266244 TAGAATGTGCAAGTTGGTGATCGACTTGGTCCCCCCTGCGTGCTGTCGATCCTGCTGTCGGAACC
66 CAGAATGCACAAGTTGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACC
1266309 CTCGGT
131 CTCGGT
1266315 TCGATTTGAT
Statistics
Matches: 114, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
158 113 0.99
159 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (158 bp):
ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAACCGATCGAAGAGG
CAGAATGCACAAGTTGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCCTGCTGCCGCAACC
CTCGGTCTGGCTGGGGCTTAGACATGCA
Found at i:1266329 original size:158 final size:158
Alignment explanation
Indices: 1266009--1266351 Score: 379
Period size: 158 Copynumber: 2.2 Consensus size: 158
1265999 ACTCCGTATA
* * *
1266009 CTTAGACTGG-AGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAA
1 CTTAGACTGGCA-ATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
*
1266073 CCGATCGAAGAGGCAGAATGCACAAGTTGGGGATCGACCCGATCCGCCCTGCATGCTGCTGATCC
65 CCGATCGAAGAGGCAGAATGCACAAGTTGGGGATCGACCCGATCCCCCCTGCATGCTGCTGATCC
* *
1266138 TGCTGCCGCAACCCTCGGTCTGGCTGGGG
130 TGCTGCCGCAACCCTCGGTCTGACTGGAG
* * * * *
1266167 CTTAGACAT-GCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCTCTCAG
1 CTTAGAC-TGGCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAA
* * * ** * ** * *
1266231 CCGGTCGGAGAGGTAGAATGTGCAAGTTGGTGATCGACTTGGTCCCCCCTGCGTGCTG-TCGATC
65 CCGATCGAAGAGGCAGAATGCACAAGTTGGGGATCGACCCGATCCCCCCTGCATGCTGCT-GATC
* * * * *
1266295 CTGCTGTCGGAACCCTCGGT-TCGATTTGAT
129 CTGCTGCCGCAACCCTCGGTCT-GACTGGAG
*
1266325 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGCAATGAACTCCGTATGC
1266352 TTAGACTAGG
Statistics
Matches: 152, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
157 3 0.02
158 147 0.97
159 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.22
Consensus pattern (158 bp):
CTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAAC
CGATCGAAGAGGCAGAATGCACAAGTTGGGGATCGACCCGATCCCCCCTGCATGCTGCTGATCCT
GCTGCCGCAACCCTCGGTCTGACTGGAG
Found at i:1266366 original size:26 final size:26
Alignment explanation
Indices: 1266325--1266377 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1266315 TCGATTTGAT
1266325 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1266351 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
1266377 C
1 C
1266378 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1266451 original size:342 final size:343
Alignment explanation
Indices: 1265823--1266453 Score: 899
Period size: 342 Copynumber: 1.8 Consensus size: 343
1265813 AACTTCGTAT
* * *
1265823 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGATCGTACGGGCGCTCAG
1 GCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* *
1265888 CTGGCCAGAGAGGCAGAATGAGCAAGCTGGGGACCGACTCGATCCCCTCCTGTGTGCTGTCGATC
66 CCGGCCAGAGAGGCAGAATGAGCAAGCTGGGGACCGACTCGATCCCCTCCTGCGTGCTGTCGATC
*
1265953 CTGCTACCGTAACCCTCGGTCTGATCCGATCTGAGACTGGGAATGAACTCCGTATACTTAGACTG
131 CTGCTACCGGAACCCTCGGTCTGATCCGATCTGAGACTGGGAATGAACTCCGTATACTTAGACTG
* *
1266018 GAGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAACCGATCGAAG
196 GAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAACCGATCGAAG
** **
1266083 AGGCAGAATGCACAAGTTGGGGATCGACCCGATCCGCCCTGCATGCTGCTGATCCTGCTGCCGCA
261 AGGCAGAATGCACAACCTAAGGATCGACCCGATCCGCCCTGCATGCTGCTGATCCTGCTGCCGCA
1266148 ACCCTCGGTCTGGCTGGG
326 ACCCTCGGTCTGGCTGGG
* * *
1266166 GCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCTCTCAG
1 GCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * * *
1266231 CCGGTCGGAGAGGTAGAATGTGCAAGTTGGTGATCGACTTGGTCCCC-CCTGCGTGCTGTCGATC
66 CCGGCCAGAGAGGCAGAATGAGCAAGCTGGGGACCGACTCGATCCCCTCCTGCGTGCTGTCGATC
** ** * *
1266295 CTGCTGTCGGAACCCTCGGT-TCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
131 CTGCTACCGGAACCCTCGGTCT-GATCCGATCTGAGACTGGGAATGAACTCCGTATACTTAGACT
* * * * *
1266359 AGG-GATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGTGCACTCAGCCGGTCGA
195 -GGAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAACCGATCGA
*
1266423 AGAGGCAGAATGCGCAACCTAAGGATCGACC
259 AGAGGCAGAATGCACAACCTAAGGATCGACC
1266454 TAGTTCCCCC
Statistics
Matches: 250, Mismatches: 36, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
341 1 0.00
342 151 0.60
343 98 0.39
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (343 bp):
GCTTAGACATGCAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAG
CCGGCCAGAGAGGCAGAATGAGCAAGCTGGGGACCGACTCGATCCCCTCCTGCGTGCTGTCGATC
CTGCTACCGGAACCCTCGGTCTGATCCGATCTGAGACTGGGAATGAACTCCGTATACTTAGACTG
GAGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCACTCAACCGATCGAAG
AGGCAGAATGCACAACCTAAGGATCGACCCGATCCGCCCTGCATGCTGCTGATCCTGCTGCCGCA
ACCCTCGGTCTGGCTGGG
Found at i:1266475 original size:184 final size:184
Alignment explanation
Indices: 1266179--1266623 Score: 511
Period size: 184 Copynumber: 2.4 Consensus size: 184
1266169 TAGACATGCA
** * * * * *
1266179 ATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTGCGGGCTCTCAGCCGGTCGGAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGTCGAAGAGG
* * * ** * * * * *
1266244 TAGAATGTGCAAGTTGGTGATCGACTTGGTCCCCCCTGCGTGCTGTCGATCCTGCT-GT-CGGAA
66 CAGAATGCGCAACTAAGTGATCGACCTAGTCCCCCCTACGTGCTGTCGATCCTACTACTAC--AA
*** *
1266307 CCCTCGGT-TCGATTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGG
129 CCCTCGGTCT-GATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGG
*
1266363 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGTGCACTCAGCCGGTCGAAGAGG
1 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGTCGAAGAGG
*
1266428 CAGAATGCGCAACCTAAG-GATCGACCTAGTTCCCCCTACGTGCTGTCGATCCTACTACTACAAC
66 CAGAATGCGCAA-CTAAGTGATCGACCTAGTCCCCCCTACGTGCTGTCGATCCTACTACTACAAC
* * * *
1266492 CCTCGGTCTGGTCCAATCTTAGACTGTGAATGAACTTCATATTCTTAGACTAGGG
130 CCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGG
* * * * ** *
1266547 ATGAACTCTGTATGCTTAAGTCAACCCATGAAACAAGCGTACGGGCACTCAGTCAATCGAAGAAG
1 ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGTCGAAGAGG
*
1266612 CAGGATGCGCAA
66 CAGAATGCGCAA
1266624 GTCAAGGATC
Statistics
Matches: 221, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
184 216 0.98
185 4 0.02
186 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (184 bp):
ATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCGGTCGAAGAGG
CAGAATGCGCAACTAAGTGATCGACCTAGTCCCCCCTACGTGCTGTCGATCCTACTACTACAACC
CTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGG
Found at i:1268145 original size:26 final size:26
Alignment explanation
Indices: 1268094--1268146 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1268084 TCGGTCTGAT
*
1268094 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1268120 CTTAGACAT-GGAATGAACTCTATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
1268146 C
1 C
1268147 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1268614 original size:158 final size:157
Alignment explanation
Indices: 1268120--1268621 Score: 465
Period size: 158 Copynumber: 3.2 Consensus size: 157
1268110 ACTCCGTATG
* *
1268120 CTTAGACATGGAATGAACTCTATATGCCTAAGCCAACCCACGAAACGAGCGTGCTGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * *
1268185 CGATCGGAGAGGCAAAATGCGCAAGTCGGGGATTGGCCCGATCCCCCCTACGTGCTATCGAACCT
66 CGACCGAAGAGGCAAAATGCGCAAGTCGGGGATTGACCAGATCCTCCCTACGTGCTATCGATCCT
* * * *
1268250 ACT-ACTACAACTCTCGATCCGATCCAAT
131 GCTGAC-ACAACCCTCGGTCCG-TCCGAT
* * * * * * *
1268278 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACGCACGAAATGAGCGTGCGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * * * * * * * *
1268342 CCGGTCAGAA-AGGCATAATGCGCGAGCCAGGGATTGACCTGGT-CTCCCTCTTCGTGCTACCGG
65 CC-GACCGAAGAGGCAAAATGCGCAAGTCGGGGATTGACCAGATCCT-CC-CTACGTGCTATCGA
* * * * * **
1268405 TCCCGCTGCCACAACCCTCGGTCTGGCTAGGG
127 TCCTGCTGACACAACCCTCGGTCCGTC-CGAT
* * * * *
1268437 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCAGGTGCTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * *
1268502 CGACCGAAGAGGCAGAATGCGCAAGTCGGGGATCGACCAGATCCTCCCTGCGTGCTGTCGATCCT
66 CGACCGAAGAGGCAAAATGCGCAAGTCGGGGATTGACCAGATCCTCCCTACGTGCTATCGATCCT
*
1268567 GCTGTCACAACCCTCGGTCCAGTCCGAT
131 GCTGACACAACCCTCGGTCC-GTCCGAT
1268595 CTTAGAC-TAGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
1268622 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 67, Indels: 22
0.75 0.19 0.06
Matches are distributed among these distances:
157 3 0.01
158 146 0.55
159 113 0.42
160 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
CGACCGAAGAGGCAAAATGCGCAAGTCGGGGATTGACCAGATCCTCCCTACGTGCTATCGATCCT
GCTGACACAACCCTCGGTCCGTCCGAT
Found at i:1269508 original size:159 final size:159
Alignment explanation
Indices: 1269135--1269637 Score: 410
Period size: 158 Copynumber: 3.2 Consensus size: 159
1269125 AACTCCGTAT
* * * * *
1269135 GCTTAGACATGAAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGTACGAGCGTTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
1269200 TCGGTCGAAGAGGCAGAATGGGCAAGCTAGGGATCGGCCCGGTCCCCC-ATGCGTGTTGTCGATC
66 TCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTATGCGTGCTGCCGATC
* **
1269264 CTACTGTCACAACCCTTGGTCCAATCCGA
131 CTACTGCCACAACCCTCAGTCCAATCCGA
* * * * * * * * *
1269293 TCTTAGA-GTGTGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGTGCATGCGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
1269357 G-CTGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGG
65 GTC-GGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTATGCGTGCTGCCGA
* *** * *
1269421 T-CTCGCTGCCACAACCCTCAGT-CTGGCTGGG
129 TCCT-ACTGCCACAACCCTCAGTCCAATC-CGA
* * * * *
1269452 GCTTAGACATGGAATGAACTCCCTATGCCTAAGGCAACCCACAAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
1269517 TCGATCGGAGAGGTAGT-ATGCGTAAGCCGGGGATCGGCCCGATCCCCCT-TGTGAGCTACTGAT
66 TCGGTCGAAGAGGCA-TAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTATGCGTGCTGCCGAT
* * ** * * *
1269580 CCTGCTACCGTAACCCTCGGTCCAGTTCGA
130 CCTACTGCCACAACCCTCAGTCCAATCCGA
* *
1269610 TCTTAGAC-TGGGAATGAACTTCGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
1269638 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 65, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
157 4 0.01
158 142 0.53
159 119 0.44
160 4 0.01
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
TCGGTCGAAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTATGCGTGCTGCCGATC
CTACTGCCACAACCCTCAGTCCAATCCGA
Found at i:1269662 original size:26 final size:26
Alignment explanation
Indices: 1269611--1269663 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1269601 CCAGTTCGAT
* *
1269611 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1269637 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
1269663 C
1 C
1269664 CTAAGAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1270260 original size:11 final size:11
Alignment explanation
Indices: 1270244--1270281 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
1270234 CGGTTAGGCT
1270244 CTCCGGCGATG
1 CTCCGGCGATG
*
1270255 CTCCGGCGACG
1 CTCCGGCGATG
*
1270266 CTCCGACGATG
1 CTCCGGCGATG
1270277 CTCCG
1 CTCCG
1270282 TCCCCCCTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.11, C:0.42, G:0.32, T:0.16
Consensus pattern (11 bp):
CTCCGGCGATG
Found at i:1271558 original size:26 final size:26
Alignment explanation
Indices: 1271517--1271569 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1271507 CTGGTCTGAA
1271517 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
*
1271543 CTTAGATTAGGG-ATGAACTCTGTATG
1 CTTAGATT-GGGAATGAACTCCGTATG
1271569 C
1 C
1271570 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:1272788 original size:26 final size:26
Alignment explanation
Indices: 1272759--1272828 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
1272749 TCTTAGATTG
1272759 GGAATGAACTCCGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
*
1272785 GGAATGAACTCTGTATGCTTAGACAT
1 GGAATGAACTCCGTATGCTTAGACAT
1272811 GGAATGAACTCCGTATGC
1 GGAATGAACTCCGTATGC
1272829 CTAAGCCAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAT
Found at i:1273311 original size:26 final size:26
Alignment explanation
Indices: 1273275--1273330 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
1273265 CCGATCCGAT
*
1273275 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1273301 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1273327 CTTA
1 CTTA
1273331 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1275327 original size:184 final size:184
Alignment explanation
Indices: 1274980--1275533 Score: 583
Period size: 184 Copynumber: 3.0 Consensus size: 184
1274970 TCTGGCTGGG
* * * * *
1274980 GCTTAGACACGGAATGAACTCCC-TATGCCTAAGCCAACCCACGAAATGGGCATGGGGGCGCTCA
1 GCTTAAACAAGGAATGAAC-CCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * * * *
1275044 GCCGACCGGAGAGGCAGAATGTGTAAGCTGGGGATCGGCTTGGTCCCCCCTGTGTGCTGTCGATC
65 GCCGACCGGAAAGGCAGAATGCGTAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATC
* * * * * * *
1275109 CTTCTGCCGTAACCTTCAGTCTGGTTTGATCTTAGATTAGGAATGAACTCCTTAT
130 CTACTGCTGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
** * * * ** *
1275164 GCTTAAACTGGGGATTAACCCCGTATGCCTAAGTCAACCCACGAAACGAGCGCGTGGGCGCTCAG
1 GCTTAAACAAGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
* * * * * * *
1275229 TCGACCGAAAAGGCGGAATGCGTAAGCTGGGGATTGACCCGGTCCCCCCAGCATGCTGTCGATCC
66 CCGACCGGAAAGGCAGAATGCGTAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCC
* * ** * *
1275294 TACTGCTGCAACCCTCAGTCCGATCCAATCTTAGACTGGGAATAAACTCCGTAT
131 TACTGCTGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
* * * * *
1275348 GCTTAGACAAGGAATGAACTCCGTATGCTTCAA-CCAACCCACGAAACGAACATGCGGGTGCTCA
1 GCTTAAACAAGGAATGAACCCCGTATGCCT-AAGCCAACCCACGAAACGAGCATGCGGGCGCTCA
* * ** * * *
1275412 GCCGACTGGAAAGGCAGAATGCGCAAGCCAGGGACCGACCTGGTCCCCCTTGCGTGCTATCGATC
65 GCCGACCGGAAAGGCAGAATGCGTAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATC
* * *
1275477 CTGCTACTGTAACCCTC-GATCCGGTCTGATCTTAGACAAGGAATGAACTCCGTAT
130 CTACTGCTGTAACCCTCAG-TCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
1275532 GC
1 GC
1275534 CTAAGTTAAC
Statistics
Matches: 295, Mismatches: 72, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
183 4 0.01
184 289 0.98
185 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (184 bp):
GCTTAAACAAGGAATGAACCCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCGCTCAG
CCGACCGGAAAGGCAGAATGCGTAAGCTGGGGATCGACCTGGTCCCCCCTGCGTGCTGTCGATCC
TACTGCTGTAACCCTCAGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
Found at i:1275352 original size:26 final size:26
Alignment explanation
Indices: 1275323--1275377 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
1275313 CCGATCCAAT
**
1275323 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACAAGGAATAAACTCCGTATG
*
1275349 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATAAACTCCGTATG
1275375 CTT
1 CTT
1275378 CAACCAACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACAAGGAATAAACTCCGTATG
Found at i:1276655 original size:159 final size:158
Alignment explanation
Indices: 1276228--1276722 Score: 403
Period size: 158 Copynumber: 3.1 Consensus size: 158
1276218 AACTCCATAT
* * *
1276228 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACCCATGAAACGAGCATGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
* * * * * * * * ***
1276293 TCGGCCAGAGAGGTAGAATGTGCAAACAGGGGATCGGCCCCG-TCCCCCCTATGTGCTGTTGATC
66 CCGGTCAGAGAGGCAGAATGCGCAAGCAGAGGATC-GACCCGATCCCCCCTATATGCTCCAGATC
** * *
1276357 TTGCTGTCGCAACCCTCGATCCGGTCTGA
130 CCGCTGCCACAACCCTCGATCCGGTCTGA
* ** * * * * *
1276386 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTTAACCCGTGAAACAAGCGTCCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCA
* * * * * ** * *
1276450 GCCGATCGGAGCGACATAATGCGCAAGTTGAGGATCGGCCCGATCCCCCTCTGTATGCTACCAG-
65 GCCGGTCAGAGAGGCAGAATGCGCAAGCAGAGGATCGACCCGATCCCCC-CTATATGCT-CCAGA
*
1276514 TCCCGCTGCCACAACCCTCTG-TCCGG-CTGGG
128 TCCCGCTGCCACAACCCTC-GATCCGGTCT-GA
* * * *
1276545 GCTTAGACATGGAATGAACTCCCTATGCTTAAGCCAACCCATGAAACGGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
* * * **
1276610 CCGGTCAGAGAGGCAGAATGCGCATGCCGAGGATCGACCCGATCCCTCCTGCATGCTGCC-GATC
66 CCGGTCAGAGAGGCAGAATGCGCAAGCAGAGGATCGACCCGATCCCCCCTATATGCT-CCAGATC
* * * *
1276674 CTGTTGCCACAACCTTTC-ATCCGGTCCGA
130 CCGCTGCCACAACC-CTCGATCCGGTCTGA
*
1276703 TCTTAGAC-TGGGAATGAACT
1 GCTTAGACAT-GGAATGAACT
1276723 CTGTACGCTT
Statistics
Matches: 260, Mismatches: 65, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
157 8 0.03
158 129 0.50
159 120 0.46
160 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCATGCGGGTGCTCAG
CCGGTCAGAGAGGCAGAATGCGCAAGCAGAGGATCGACCCGATCCCCCCTATATGCTCCAGATCC
CGCTGCCACAACCCTCGATCCGGTCTGA
Found at i:1277801 original size:26 final size:26
Alignment explanation
Indices: 1277772--1277824 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1277762 CCGATTAGAT
1277772 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
1277798 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
1277824 C
1 C
1277825 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:1278019 original size:26 final size:26
Alignment explanation
Indices: 1277981--1278031 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1277971 TCAGTCTGAT
1277981 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1278007 CTTAGACAT-GGAATGGACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
1278032 ACCTAAGCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1278566 original size:158 final size:159
Alignment explanation
Indices: 1278161--1278596 Score: 399
Period size: 158 Copynumber: 2.7 Consensus size: 159
1278151 GTTTTGGTTC
* * * * *
1278161 GATCTTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCATGAAATGAGCAT-TCAGACACT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATGT-AGGCACT
* * * *
1278225 GAGCCGG-CTGGAGAGGCATAATGCGCAAAGCCAGGGATCGACCTGATCCCTCTCTGCGTGCTGC
65 CAGCTGGTC-GGAGAGGCATAATGC-CTAAGCCGGGGATCGACCTGATCCCTCTCTGCGTGCTGC
**
1278289 CGATCCCGTTACCACAACTCTCGATCCGGCTG
128 CGATCCCACTACCACAACTCTCGATCCGGCTG
** * * * * *
1278321 GGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGC--GTACGGACG
1 GATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATGTA-GG-CA
* * * *
1278383 CTCAG-TGAATCAGAGAGGCAGAATGCCTAAGCCGGGGATCGACCTGGTCACC-C-CTGCGTGCT
63 CTCAGCTG-GTCGGAGAGGCATAATGCCTAAGCCGGGGATCGACCTGATC-CCTCTCTGCGTGCT
* * * *
1278445 GCCGATCCTACTGCCACAACAT-TTGGTCCGGTCT-
126 GCCGATCCCACTACCACAAC-TCTCGATCCGG-CTG
** *
1278479 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTAACGAAAAGAACATGTAGGCACTC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATGTAGGCACTC
* * * *
1278544 AGCTGGTCGGAGAGGCATAATGCGTAATCTGGGGATC-AGCCTGATCCCCCTCT
66 AGCTGGTCGGAGAGGCATAATGCCTAAGCCGGGGATCGA-CCTGATCCCTCTCT
1278597 TCTTGCTGTC
Statistics
Matches: 218, Mismatches: 42, Indels: 33
0.74 0.14 0.11
Matches are distributed among these distances:
157 4 0.02
158 114 0.52
159 33 0.15
160 65 0.30
161 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.21
Consensus pattern (159 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCATGTAGGCACTC
AGCTGGTCGGAGAGGCATAATGCCTAAGCCGGGGATCGACCTGATCCCTCTCTGCGTGCTGCCGA
TCCCACTACCACAACTCTCGATCCGGCTG
Found at i:1278861 original size:26 final size:26
Alignment explanation
Indices: 1278823--1278874 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1278813 CCGGTTTGAT
*
1278823 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1278849 CTTAGACAT-GGAATGAGCTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1278875 ACTAAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1279364 original size:26 final size:26
Alignment explanation
Indices: 1279323--1279375 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1279313 TTGGTCCAAT
1279323 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1279349 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
1279375 C
1 C
1279376 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1281290 original size:26 final size:26
Alignment explanation
Indices: 1281261--1281313 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1281251 CCAGTCCGAT
1281261 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1281287 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1281313 C
1 C
1281314 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1281642 original size:169 final size:171
Alignment explanation
Indices: 1281286--1281653 Score: 390
Period size: 171 Copynumber: 2.2 Consensus size: 171
1281276 AACTCCGTAT
* * * * *
1281286 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGCTCAA
1 GCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAA
** * * * * *
1281351 CCGGCTGGAGAGGCATAATGCGTAAGCTGAGGATCAGCCTGACCCCCCTCTGCGTGCTGTCGATG
66 CCAACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCTGACCCCCCTCTACGTGCTATCGATG
** * * *
1281416 CCGCTGCGGGTCCTACTACCACAACCCTCGGTCCGGTTGGG
131 CCGCTGCGGGTCCTACTACCACAACCCTCAATCCGATTCGA
*
1281457 GCTTAGACAT-GGAATGAACTCCGTATGCCAAAG-CAAACCCACGAAACGAGCGTGCGGGCGCTC
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCAAAGTC-AACCCACGAAACGAGCGTACGGGCGCTC
* * **
1281520 AGCCAACCGGAGAGGCAGAAT-C-TACAAGCCG-GGATCAGCTTGGTCCCCC-CTACGTGCTATC
64 AACCAACCGGAGAGGCAGAATGCGT--AAGCCGAGGATCAGCCTGACCCCCCTCTACGTGCTATC
** **
1281581 GAT-CCTGCTGTTGGTCCTACTACTGCAACCCTCAATCCGATTCGA
127 GATGCC-GCTGCGGGTCCTACTACCACAACCCTCAATCCGATTCGA
* *
1281626 TCTTAGACTGGGAATGAACTTCGTATGC
1 GCTTAGACTGGGAATGAACTCCGTATGC
1281654 TTAGACATGA
Statistics
Matches: 163, Mismatches: 28, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
168 3 0.02
169 68 0.42
170 17 0.10
171 74 0.45
172 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAA
CCAACCGGAGAGGCAGAATGCGTAAGCCGAGGATCAGCCTGACCCCCCTCTACGTGCTATCGATG
CCGCTGCGGGTCCTACTACCACAACCCTCAATCCGATTCGA
Found at i:1282066 original size:159 final size:159
Alignment explanation
Indices: 1281903--1282192 Score: 356
Period size: 159 Copynumber: 1.8 Consensus size: 159
1281893 CCTGCTACAG
* * * * *
1281903 CAACCCTAAGTCC-AGTCCGATCTTAGAC-TGAGAATGAGCTCCGTATGCCTAAGTCAACCCACG
1 CAACCCTAAGTCCGACT-CGAGCTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACG
* ** *
1281966 AAATGAGCGTGCGGGCGC-TAAGCCGGCCAGAGAGGCGTAATGTGTAAG-TCGAGGATCGACC-C
64 AAACGAGCGTGCGGGCGCTTAA-CC-GCCAGAGAGGCAAAATGTGCAAGCT-GAGGATCGACCTC
1282028 GATCCCTCTCTGCTTGTTGCCAGTCCCGCAGCCA
126 GATCCCTCTCTGCTTGTTGCCAGTCCCGCAGCCA
** * *
1282062 CAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
1 CAACCCTAAGTCCGACTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
* * *
1282127 ACGAGCGTGCGGGTGCTTAACCGCCGGAGAGGCAAAATGTGCAAGCTGGGGATCGACCTCGATCC
66 ACGAGCGTGCGGGCGCTTAACCGCCAGAGAGGCAAAATGTGCAAGCTGAGGATCGACCTCGATCC
1282192 C
131 C
1282193 CTTGTGTGCT
Statistics
Matches: 110, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
158 29 0.26
159 74 0.67
160 7 0.06
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
CAACCCTAAGTCCGACTCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAA
ACGAGCGTGCGGGCGCTTAACCGCCAGAGAGGCAAAATGTGCAAGCTGAGGATCGACCTCGATCC
CTCTCTGCTTGTTGCCAGTCCCGCAGCCA
Found at i:1282292 original size:26 final size:27
Alignment explanation
Indices: 1282240--1282293 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
1282230 CCGGTCTGAT
*
1282240 CTTAGACTGGGAATGTAACTCTGTATG
1 CTTAGACTGGGAATGTAACTCCGTATG
* *
1282267 CTTAGATTGGGGATG-AACTCCGTATG
1 CTTAGACTGGGAATGTAACTCCGTATG
1282293 C
1 C
1282294 CAATCAACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (27 bp):
CTTAGACTGGGAATGTAACTCCGTATG
Found at i:1282649 original size:26 final size:26
Alignment explanation
Indices: 1282611--1282663 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
1282601 CCGGTCCGAT
1282611 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
1282637 CTTAGAC-ATGGAATGAACTTCGTATG
1 CTTAGACTA-GGAATGAACTTCGTATG
1282663 C
1 C
1282664 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.88
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:1282961 original size:25 final size:26
Alignment explanation
Indices: 1282933--1282984 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1282923 CCGGTTTGAT
1282933 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1282958 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1282984 C
1 C
1282985 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1283156 original size:26 final size:25
Alignment explanation
Indices: 1283127--1283178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 25
1283117 CCGGTCTAAT
1283127 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACT-CGTATG
1283153 CTTAGACATGGAATGAACTCGTATG
1 CTTAGACATGGAATGAACTCGTATG
1283178 C
1 C
1283179 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 7 0.28
26 17 0.68
27 1 0.04
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGACATGGAATGAACTCGTATG
Found at i:1283266 original size:195 final size:192
Alignment explanation
Indices: 1282922--1283281 Score: 440
Period size: 195 Copynumber: 1.8 Consensus size: 192
1282912 AATCCCTCGA
* * *
1282922 TCCGGTTTGATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCT
1 TCCGGTCTAATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** *
1282987 AAGTCAACCTACGAAACGAGCATTGCAGGAGCTCAGTCGGCCGAAGAGGCAGAATGCACAAGCCG
66 AAGCCAACCCACGAAACGAG-A-TGCAGGAGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCG
*
1283052 GGGATCGACCCGTCCCCCTACATGCTG-CAGATCCTTCTACTGGTCCTACTACCGCAACCATTGG
129 GGGACCGACCCGTCCCCCTACATGCTGTC-GATCCTTCTACTGGTCCTACTACCGCAACCATTGG
1283116 TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAT-GGAATGAACT-CGTATGC
1 TCCGGTCTAATCTTAGACT-GGAATGAACTCCGTATGCTTAGAC-TGGGAATGAACTCCGTATGC
* * * * * **
1283179 CTAAGCCAGCCCACGAAATGAG-TGCACGGGCGCTCAACCGATCGGAGAGGCAGAATGCGTAAGC
64 CTAAGCCAACCCACGAAACGAGATGCA--GGAGCTCAACCGACCGAAGAGGCAGAATGCACAAGC
* * *
1283243 CGGGGACCGGCTCGGTCCCCCCTACGTGCTGTCGATCCT
127 CGGGGACCGAC-CCGT-CCCCCTACATGCTGTCGATCCT
1283282 ACTATCGAAA
Statistics
Matches: 140, Mismatches: 19, Indels: 13
0.81 0.11 0.08
Matches are distributed among these distances:
191 4 0.03
193 37 0.26
194 45 0.32
195 52 0.37
196 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (192 bp):
TCCGGTCTAATCTTAGACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCCACGAAACGAGATGCAGGAGCTCAACCGACCGAAGAGGCAGAATGCACAAGCCGGG
GACCGACCCGTCCCCCTACATGCTGTCGATCCTTCTACTGGTCCTACTACCGCAACCATTGG
Found at i:1283651 original size:26 final size:26
Alignment explanation
Indices: 1283615--1283667 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1283605 CTGATCCGAT
* *
1283615 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1283641 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1283667 C
1 C
1283668 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1285353 original size:26 final size:26
Alignment explanation
Indices: 1285315--1285367 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1285305 GGCTCAAAAT
1285315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1285341 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1285367 C
1 C
1285368 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1285733 original size:158 final size:158
Alignment explanation
Indices: 1285341--1285740 Score: 400
Period size: 158 Copynumber: 2.5 Consensus size: 158
1285331 ACTCCGTATG
* * * *
1285341 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA-CTAGCGAAACAAGCGTACGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAACGAGCATACGGGTGCTCAG
* * **
1285405 TCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATTGGCCCAGTCCCCCCTATGTGCTGTCGATCC
65 CCGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCCCAGTCCCCCCTATGTGCTACCGATCC
* * *
1285470 TACTACCATAACCTTCGGTCTGGTCAGAT
130 TACTACCACAACCCTCAGTCTGGTCAGAT
** * * * * *
1285499 CTTAGAC-TGGGAATGAACTTTGTATGCATAAGTCAACCCATGAAACGAGCATGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAG
* * * * *
1285563 CCGGCCGAAGAGGCATAATGTGCAAG-CTGAGGATTGGCCC-GATCCCCCTCTGTGTGCTACCGG
65 CCGGCCGGAGAGGCAGAATGCGCAAGTC-GAGGATTGGCCCAG-TCCCCC-CTATGTGCTACCGA
* **
1285626 T-CTCACTGCCACAACCCTCAGTCTGGCTGGGA-
127 TCCT-ACTACCACAACCCTCAGTCTGG-TCAGAT
* * *
1285658 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG-AACGGGCATACGGGTGCTCAAC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAGC
** *
1285722 CGGTTGGAGAGGTAGAATG
66 CGGCCGGAGAGGCAGAATG
1285741 AAAAAGTTAG
Statistics
Matches: 193, Mismatches: 41, Indels: 16
0.77 0.16 0.06
Matches are distributed among these distances:
157 3 0.02
158 121 0.63
159 65 0.34
160 4 0.02
ACGTcount: A:0.25, C:0.27, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGTGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGTCGAGGATTGGCCCAGTCCCCCCTATGTGCTACCGATCCT
ACTACCACAACCCTCAGTCTGGTCAGAT
Found at i:1287634 original size:26 final size:26
Alignment explanation
Indices: 1287605--1287657 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1287595 CCGGTCTGAT
1287605 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1287631 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1287657 C
1 C
1287658 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1288223 original size:26 final size:26
Alignment explanation
Indices: 1288184--1288238 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 26
1288174 GCTCAAAATG
*
1288184 TTAGACTGGAAATGAACTCTGTATGC
1 TTAGACTGGAAATGAACTCCGTATGC
1288210 TTAGACATGG-AATGAACTCCGTATGC
1 TTAGAC-TGGAAATGAACTCCGTATGC
1288236 TTA
1 TTA
1288239 AGCCAAGCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCCGTATGC
Found at i:1289102 original size:26 final size:26
Alignment explanation
Indices: 1289062--1289112 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1289052 TCATTCTGAT
1289062 CTTAGACTGGAAATGAACTCCGTATA
1 CTTAGACTGGAAATGAACTCCGTATA
1289088 CTTAGACATGG-AATGAACTCCGTAT
1 CTTAGAC-TGGAAATGAACTCCGTAT
1289113 GCCTAAGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATA
Found at i:1289380 original size:158 final size:153
Alignment explanation
Indices: 1289088--1289798 Score: 422
Period size: 158 Copynumber: 4.5 Consensus size: 153
1289078 ACTCCGTATA
* * **
1289088 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCTAACCCA-CGAATCGATG-GTGCGGGCCCTC
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATCAAAT-GA-GCGTGCGGGTGCTC
* * ** * * * * *
1289150 AGCCGACCAGAGAGGCAGAATGCGCAAG-TTGAAGATC-GACCGGGTCCCCCCTACGTGCTATTG
63 AACCG---A-AGAGGCAGAATACGCAAGCCGGGA-ATCAG-CCCGGTCCCCCCTACATGCTGTCG
* *
1289213 ATCCTACTGCCGTAACCCTCAGTCTGGTCTGAT
122 ATCCCACTGCCGCAACCCTC-GTCTGGTCTGAT
* * **
1289246 CTTAGACTGGGAATGAACTCTGTATGCCAAATTCAACCCATCAAATGAGCGTGCGGGTGCTGTGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATCAAATGAGCGTGCGGGTGC--T--
* * * * * *
1289311 CGACCGAAGAGGCATAAT-CGCAAGCCGGGGATCAGTCCGGTCCCCCTCTGCATGCTGTCGGTCC
62 CAACCGAAGAGGCAGAATACGCAAGCCGGGAATCAGCCCGGTCCCCC-CTACATGCTGTCGATCC
* * * **
1289375 CACTGCCACAACCCTCG-CTCCGACTGGGG
126 CACTGCCGCAACCCTCGTCT-GGTCT-GAT
* * * *
1289404 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAT-AGGCGTACGGATGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATCAAATGA-GCGTGCGGGTGCTCA
* * * * **
1289467 ACCGGAGAGGTAGAATACGCAAGCTGGGAATCAGCCCGGTCCCCCCTACGTGCTGTCGATCCTGC
64 ACCGAAGAGGCAGAATACGCAAGCCGGGAATCAGCCCGGTCCCCCCTACATGCTGTCGATCCCAC
** * * *
1289532 TATCGGAACCCTCGGTCCGGTCTAAT
129 TGCCGCAACCCTC-GTCTGGTCTGAT
*
1289558 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCA-CGAAATGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATC-AAATGAGCGTGCGGGTGCTCA-
* * * ** * * *
1289622 TTGAAC-ATAGAGGCAGAATGCGTAAGCCAGGG-ATTGGACCGATCCCCCCTACGTGCTGTCGAT
64 ---ACCGA-AGAGGCAGAATACGCAAGCC-GGGAATCAGCCCGGTCCCCCCTACATGCTGTCGAT
*** * * *
1289685 CCTGTTGCCGCAACCCTTGGTCCGGTCCGAT
124 CCCACTGCCGCAACCC-TCGTCTGGTCTGAT
* * ** * * * *
1289716 CTTAGACTGGGAATGAACTTCATATGCAC-AAGTTAAACCATGAAACGAGCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGC-CTAAGCCAACCCATCAAATGAGCGTGCGGGTGCTCA-
1289780 CCAGCCGAAGAGGCAGAAT
64 --A-CCGAAGAGGCAGAAT
1289799 GCTCAAGCTA
Statistics
Matches: 430, Mismatches: 92, Indels: 62
0.74 0.16 0.11
Matches are distributed among these distances:
153 1 0.00
154 91 0.21
155 30 0.07
156 4 0.01
157 26 0.06
158 261 0.61
159 12 0.03
160 1 0.00
162 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (153 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATCAAATGAGCGTGCGGGTGCTCAAC
CGAAGAGGCAGAATACGCAAGCCGGGAATCAGCCCGGTCCCCCCTACATGCTGTCGATCCCACTG
CCGCAACCCTCGTCTGGTCTGAT
Found at i:1289759 original size:312 final size:312
Alignment explanation
Indices: 1289192--1289760 Score: 646
Period size: 312 Copynumber: 1.8 Consensus size: 312
1289182 AGATCGACCG
* * * * *
1289192 GGTCCCCCCTACGTGCTATTGATCCTACTGCCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGG
1 GGTCCCCCCTACGTGCTATCGATCCTACTACCGGAACCCTCAGTCCGGTCTAATCTTAGACTGGG
* ** * ** *
1289257 AATGAACTCTGTATGCCAAATTCAACCCATCAAATGAGCGTGCGGGTGCTGTGCCGACCGAAGAG
66 AATGAACTCCGTATGCCAAAGCCAACCCATCAAATGAGCGTGCGGGCGCTCAGCCGAACGAAGAG
* * * * * *
1289322 GCATAATCGCAAGCCGGGGATCAGTCCGGTCCCCCTCTGCATGCTGTCGGTCCCACTGCCACAAC
131 GCAGAATCGCAAGCCAGGGATCAGACCGATCCCCCTCTACATGCTGTCGATCCCACTGCCACAAC
* * * *
1289387 CCTCGCTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAG
196 CCTCGCTCCGACTCGAGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAACCATGAAATAG
1289452 GCGTACGGATGCTCAACCGGAGAGGTAGAATACGCAAGCTGGGAATCAGCCC
261 GCGTACGGATGCTCAACCGGAGAGGTAGAATACGCAAGCTGGGAATCAGCCC
* * * *
1289504 GGTCCCCCCTACGTGCTGTCGATCCTGCTATCGGAACCCTCGGTCCGGTCTAATCTTAGACTGGG
1 GGTCCCCCCTACGTGCTATCGATCCTACTACCGGAACCCTCAGTCCGGTCTAATCTTAGACTGGG
* **
1289569 AATGAACTCCGTATGCCTAAGCCAACCCA-CGAAATGAGCGTGCGGGCGCTCAGTTGAAC-ATAG
66 AATGAACTCCGTATGCCAAAGCCAACCCATC-AAATGAGCGTGCGGGCGCTCAGCCGAACGA-AG
* ** * *** *
1289632 AGGCAGAATGCGTAAGCCAGGGATTGGACCGATCCCCC-CTACGTGCTGTCGATCCTGTTGCCGC
129 AGGCAGAAT-CGCAAGCCAGGGATCAGACCGATCCCCCTCTACATGCTGTCGATCCCACTGCCAC
* * * * * **
1289696 AACCCTTGGTCCG-GTCCGATCTTAGAC-TGGGAATGAACTTCATATGCAC-AAGTTAAACCATG
193 AACCCTCGCTCCGACT-CGAGCTTAGACAT-GGAATGAACTCCATATGC-CTAAGCCAAACCATG
1289758 AAA
255 AAA
1289761 CGAGCGTGCG
Statistics
Matches: 207, Mismatches: 44, Indels: 12
0.79 0.17 0.05
Matches are distributed among these distances:
311 4 0.02
312 180 0.87
313 23 0.11
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (312 bp):
GGTCCCCCCTACGTGCTATCGATCCTACTACCGGAACCCTCAGTCCGGTCTAATCTTAGACTGGG
AATGAACTCCGTATGCCAAAGCCAACCCATCAAATGAGCGTGCGGGCGCTCAGCCGAACGAAGAG
GCAGAATCGCAAGCCAGGGATCAGACCGATCCCCCTCTACATGCTGTCGATCCCACTGCCACAAC
CCTCGCTCCGACTCGAGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAAACCATGAAATAG
GCGTACGGATGCTCAACCGGAGAGGTAGAATACGCAAGCTGGGAATCAGCCC
Found at i:1289799 original size:158 final size:158
Alignment explanation
Indices: 1289506--1289848 Score: 390
Period size: 158 Copynumber: 2.2 Consensus size: 158
1289496 ATCAGCCCGG
* * *
1289506 TCCCCCCTACGTGCTGTCGATCCTGCTATCGGAACCCTCGGTCCGGTCTAATCTTAGACTGGGAA
1 TCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAA
* * * **
1289571 TGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGTTGAACATAGAGGC
66 TGAACTCCATATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAGCAGAACATAGAGGC
*
1289636 AGAATGCGT-AAGCCAGGGATTGGAC-CGA
131 AGAATGC-TCAAGCCAAGGATTGG-CTCGA
* * * *
1289664 TCCCCCCTACGTGCTGTCGATCCTGTTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAA
1 TCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAA
* ** * *
1289729 TGAACTTCATATGCAC-AAGTTAAACCATGAAACGAGCGTGCGGGCGCTCAGCCAG-CCGA-AGA
66 TGAACTCCATATGC-CTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAG-CAGAAC-ATAGA
* *
1289791 GGCAGAATGCTCAAGCTAAGGATTGGCTCGC
128 GGCAGAATGCTCAAGCCAAGGATTGGCTCGA
* * * *
1289822 TTCCCCCTGCGTGCTATCGATCTTGCT
1 TCCCCCCTACGTGCTGTCGATCCTGCT
1289849 GCTGGTCCTG
Statistics
Matches: 155, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
157 2 0.01
158 150 0.97
159 3 0.02
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.22
Consensus pattern (158 bp):
TCCCCCCTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAA
TGAACTCCATATGCCTAAGCCAAACCACGAAACGAGCGTGCGGGCGCTCAGCAGAACATAGAGGC
AGAATGCTCAAGCCAAGGATTGGCTCGA
Found at i:1291127 original size:26 final size:26
Alignment explanation
Indices: 1291090--1291140 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1291080 GCTCAAAATC
*
1291090 TTAGACTAGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCATATGG
1291116 TTAGAC-ATGGAATGAACTCCATATG
1 TTAGACTA-GGAATGAACTCCATATG
1291141 CCTAAGCCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 1 0.04
26 22 0.96
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGG
Found at i:1291992 original size:26 final size:26
Alignment explanation
Indices: 1291952--1292002 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1291942 CGTTTCGATC
*
1291952 TTAGACTGGAAATGAACTCTATATGG
1 TTAGACTGGAAATGAACTCGATATGG
**
1291978 TTAGACTGGGGATGAACTCGATATG
1 TTAGACTGGAAATGAACTCGATATG
1292003 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGAAATGAACTCGATATGG
Found at i:1292331 original size:26 final size:26
Alignment explanation
Indices: 1292295--1292347 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1292285 TCGGTCTGAT
*
1292295 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1292321 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1292347 C
1 C
1292348 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1293093 original size:158 final size:158
Alignment explanation
Indices: 1292927--1293291 Score: 444
Period size: 158 Copynumber: 2.3 Consensus size: 158
1292917 TTAGACTGGG
* * * * *
1292927 AATAAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAGCCGGTCGAAGAG
1 AATAAACTCCATATGCCTAAG-CAACCCACGAAATGAGCGTACGGGCACTGAACCGATCGAAGAG
* * * * * * *
1292992 GAATAATGTGCAAGCTGGGGATCAACCCGGTTCCCCTTTGTGTACTGCCGATCCCGCTGTCACAA
65 GAATAATGCGCAAGCCGAGGATCAACCCGATCCCCCTTTGCGTACTGCCGATCCCACTGTCACAA
*
1293057 CCCTCGGTCCGACTGGGGCTTAGACATGG
130 CCCTCGGTCCGACTGGGGCTTAGACATGC
* * * *
1293086 AA-GAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGCACTGAACCGATCGAAGAG
1 AATAAACTCCATATGCCTAAG-CAACCCACGAAATGAGCGTACGGGCACTGAACCGATCGAAGAG
* * * * *
1293150 GCATAATGCGCAAGCCGAGGATCAACTCGATCCCCCTTTGCGTGCTGCCGGTCCCACTGTGACAA
65 GAATAATGCGCAAGCCGAGGATCAACCCGATCCCCCTTTGCGTACTGCCGATCCCACTGTCACAA
* *
1293215 CCCTCGGTCTGGCTGGGGCTTAGACATGC
130 CCCTCGGTCCGACTGGGGCTTAGACATGC
* * * *
1293244 AATAAACTTCATATGCCTAAGCTGACCCACGAAACGAGCGTGCGGGCA
1 AATAAACTCCATATGCCTAAGC-AACCCACGAAATGAGCGTACGGGCA
1293292 AGAGGCTGAC
Statistics
Matches: 172, Mismatches: 32, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
158 135 0.78
159 37 0.22
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.19
Consensus pattern (158 bp):
AATAAACTCCATATGCCTAAGCAACCCACGAAATGAGCGTACGGGCACTGAACCGATCGAAGAGG
AATAATGCGCAAGCCGAGGATCAACCCGATCCCCCTTTGCGTACTGCCGATCCCACTGTCACAAC
CCTCGGTCCGACTGGGGCTTAGACATGC
Found at i:1293344 original size:158 final size:157
Alignment explanation
Indices: 1292930--1293361 Score: 389
Period size: 158 Copynumber: 2.7 Consensus size: 157
1292920 GACTGGGAAT
* * ** * * * * ** * *
1292930 AAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAGCCGGTCGAAGAGGAA
1 AAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACAGAACCGACCAAAGAGGCA
* ** * * *
1292995 TAATGTGCAAGCTGGGGATCAACCCGGTTCCCCTTTGTGTACTGCCGATCCCGCTGTCACAACCC
66 GAATGCACAAGCTGGGGATCAACCCGG-TCCCCTTTGCGTGCTGCCGATCCCACTGTCACAACCC
*
1293060 TCGGTCCGACTGGGGCTTAGACATGGAA
130 TCGGTCCGACTGGGGCTTAGACATGCAA
* * * * * * *
1293088 GAACTCCCTATGCCTAAGCCAACCCACAAAATGGGCGTACGGGCACTGAACCGATCGAAGAGGCA
1 AAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACAGAACCGACCAAAGAGGCA
* * * * * * * *
1293153 TAATGCGCAAGCCGAGGATCAACTCGATCCCCCTTTGCGTGCTGCCGGTCCCACTGTGACAACCC
66 GAATGCACAAGCTGGGGATCAACCCGGT-CCCCTTTGCGTGCTGCCGATCCCACTGTCACAACCC
* *
1293218 TCGGTCTGGCTGGGGCTTAGACATGCAA
130 TCGGTCCGACTGGGGCTTAGACATGCAA
* ** * * * *
1293246 TAAACTTCATATGCCTAAGCTGACCCACGAAACGAGCGTGCGGGCA-AGAGGCTGACCAAAGAGG
1 -AAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACAGA-ACCGACCAAAGAGG
* ** * *
1293310 CAGAATGCATAAGCTGGGGATCGGCCCGGTCCCCTCTGCGTGCTGTCGATCC
64 CAGAATGCACAAGCTGGGGATCAACCCGGTCCCCTTTGCGTGCTGCCGATCC
1293362 TGCTGCTGGT
Statistics
Matches: 222, Mismatches: 49, Indels: 6
0.80 0.18 0.02
Matches are distributed among these distances:
157 1 0.00
158 154 0.69
159 67 0.30
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (157 bp):
AAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCACAGAACCGACCAAAGAGGCA
GAATGCACAAGCTGGGGATCAACCCGGTCCCCTTTGCGTGCTGCCGATCCCACTGTCACAACCCT
CGGTCCGACTGGGGCTTAGACATGCAA
Found at i:1293441 original size:26 final size:26
Alignment explanation
Indices: 1293403--1293455 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1293393 CCGGTCCGAT
*
1293403 CTTAGATAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTTCGTATG
* *
1293429 CTTAGACATGGAATGAACTTTGTATG
1 CTTAGACAGGGAATGAACTTCGTATG
1293455 C
1 C
1293456 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTTCGTATG
Found at i:1293835 original size:671 final size:672
Alignment explanation
Indices: 1292538--1293843 Score: 1681
Period size: 671 Copynumber: 1.9 Consensus size: 672
1292528 TTCGTGGCAA
* * * *
1292538 GACAGCCCTCGGTCCGACTGGGGCATAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
1 GACAACCCTCGGTCCGACTGGGGCATAGACATGCAATAAACTCCATATGCCTAAGCCAACCCACG
** **
1292603 AAACGAGCGTGCAGGTGAGAGGCCGATCGGAAAGGCAGAATGCACAAGCCGGGGATCGACCCAAT
66 AAACGAGCGTGCAGGCAAGAGGCCGATCCAAAAGGCAGAATGCACAAGCCGGGGATCGACCCAAT
* * * *
1292668 CCCTCCCTGCGTACTATCGATCCTACTGCTGGTCCTGCTACCGCAACCTTCGGTCCAATCTGATC
131 CCCTCCCTGCGTACTATCGATCCTACTGCTGGTCCTGCTACCACAACCCTCGATCCAATCCGATC
1292733 TTAGACTAAGAATGAACTCCGTATGCATAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCCA
196 TTAGACTAAGAATGAACTCCGTATGCATAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCCA
* * *
1292798 CGAAATGAGCGCGCAGGTGTTCAACCGATCGGAGAGGCAGAAAGCACAAGCCGAGGACCAGCCCG
261 CGAAATGAGCGCGCAGGCGCTCAACCGACCGGAGAGGCAGAAAGCACAAGCCGAGGACCAGCCCG
* * * *
1292863 ATCCCCCCTGCGTGTTGTCGATCTTGTTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGA
326 ATCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGA
* * * *
1292928 ATAAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTTCGGGCACTGAGCCGGTCGAAGAGG
391 ATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGACACTGAGCCGATAGAAGAGG
* * * * ** **
1292993 AATAATGTGCAAGCTGGGGATCAACCCGGTTCCCCTTTGTGTACTGCCGATCCCGCTGTCACAAC
456 AATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCATACTGCCGATCCCGCTACCACAAC
* *
1293058 CCTCGGTCCGACTGGGGCTTAGACATGGAAGAACTCCCTATGCCTAAGCCAACCCACAAAATGGG
521 CCTCGATCCGACTGGGGCTTAGACATGGAAGAACTCCCTATGCCTAAGCCAACCCACAAAATGAG
* * *
1293123 CGTACGGGCACTGAACCGATCGAAGAGGCATAATGCGCAAGCCGAGGATCAACTCGATCCCCCTT
586 AGTACGGGCACTCAACCGATCGAAGAGGCAAAATGCGCAAGCCGAGGATCAACTCGATCCCCCTT
1293188 TGCGTGCTGCCGGTCCCACTGT
651 TGCGTGCTGCCGGTCCCACTGT
* * * * **
1293210 GACAACCCTCGGTCTGGCTGGGGCTTAGACATGCAATAAACTTCATATGCCTAAGCTGACCCACG
1 GACAACCCTCGGTCCGACTGGGGCATAGACATGCAATAAACTCCATATGCCTAAGCCAACCCACG
* * * * * **
1293275 AAACGAGCGTGCGGGCAAGAGGCTGA-CCAAAGAGGCAGAATGCATAAGCTGGGGATCGGCCCGG
66 AAACGAGCGTGCAGGCAAGAGGCCGATCCAAA-AGGCAGAATGCACAAGCCGGGGATCGACCCAA
* * * * * * **
1293339 TCCC-CTCTGCGTGCTGTCGATCCTGCTGCTGGTCTTGTTACCACAACCCTCGATCCGGTCCGAT
130 TCCCTCCCTGCGTACTATCGATCCTACTGCTGGTCCTGCTACCACAACCCTCGATCCAATCCGAT
* * * **
1293403 CTTAGA-TAGGGAATGAACTTCGTATGCTTAGACATG-GAATGAACTTTGTATGCCTAAGCCAAC
195 CTTAGACTA-AGAATGAACTCCGTATGCATAGAC-TGTGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
1293466 CCACGAAATGAGCGTGCGGGCGCTCAACCGACCGGAGAGGCAGAATGCGCAAGTCGGGGACTAGC
258 CCACGAAATGAGCGCGCAGGCGCTCAACCGACCGGAGAGGCAGAAAGCACAAGCCGAGGACCAGC
* *
1293531 CC-AGTCCCTCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAGTCTAGTCTGATCTTAGACT
323 CCGA-TCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAGTCCAGTCTGATCTTAGACT
* ** *
1293595 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGACGTTGAGTCGATAGAA
387 GGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGACACTGAGCCGATAGAA
* **** * *
1293660 GAGGGATAATGCGCAAGCCGGGGATCGGTTCGGTCCCCCTCTGCATGCTGCC-AGTCTCGCTACC
452 GAGGAATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCATACTGCCGA-TCCCGCTACC
** * *
1293724 ACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGTCTAAGCCAACCCACGA
516 ACAACCCTCGATCCGACTGGGGCTTAGACATGGAA-GAACTCCCTATGCCTAAGCCAACCCACAA
* * * * * *
1293789 AATGAGAGT-GGGGCGCTCAACCGGTCGGAGAGGCAAAATTCGCAAGCTGAGGATC
580 AATGAGAGTACGGGCACTCAACCGATCGAAGAGGCAAAATGCGCAAGCCGAGGATC
1293844 GGCCCGGTCC
Statistics
Matches: 536, Mismatches: 92, Indels: 13
0.84 0.14 0.02
Matches are distributed among these distances:
670 4 0.01
671 388 0.72
672 144 0.27
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (672 bp):
GACAACCCTCGGTCCGACTGGGGCATAGACATGCAATAAACTCCATATGCCTAAGCCAACCCACG
AAACGAGCGTGCAGGCAAGAGGCCGATCCAAAAGGCAGAATGCACAAGCCGGGGATCGACCCAAT
CCCTCCCTGCGTACTATCGATCCTACTGCTGGTCCTGCTACCACAACCCTCGATCCAATCCGATC
TTAGACTAAGAATGAACTCCGTATGCATAGACTGTGAATGAACTCCGTATGCCTAAGCCAACCCA
CGAAATGAGCGCGCAGGCGCTCAACCGACCGGAGAGGCAGAAAGCACAAGCCGAGGACCAGCCCG
ATCCCCCCTGCGTGCTATCGATCCTGCTGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGA
ATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTTCGGACACTGAGCCGATAGAAGAGG
AATAATGCGCAAGCCGGGGATCAACCCGGTCCCCCTCTGCATACTGCCGATCCCGCTACCACAAC
CCTCGATCCGACTGGGGCTTAGACATGGAAGAACTCCCTATGCCTAAGCCAACCCACAAAATGAG
AGTACGGGCACTCAACCGATCGAAGAGGCAAAATGCGCAAGCCGAGGATCAACTCGATCCCCCTT
TGCGTGCTGCCGGTCCCACTGT
Found at i:1293932 original size:26 final size:26
Alignment explanation
Indices: 1293903--1293955 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1293893 CCGGTCCAAT
1293903 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGACTAGGG-ATGAACTCCATATG
*
1293929 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGGATGAACTCCATATG
1293955 C
1 C
1293956 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCATATG
Found at i:1294325 original size:26 final size:26
Alignment explanation
Indices: 1294284--1294336 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1294274 CTGGTTCGAT
1294284 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
1294310 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
1294336 C
1 C
1294337 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:1294498 original size:368 final size:361
Alignment explanation
Indices: 1293718--1294573 Score: 894
Period size: 368 Copynumber: 2.3 Consensus size: 361
1293708 TGCCAGTCTC
* * * * *
1293718 GCTACCACAACCCTCGATCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGTCTAAGCCAAC
1 GCTACCACAACCCTCGATCCGGCTGAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
1293783 CCACGAAATGA-GAGTG-GGGCGCTCAACCGGTCGGAGAGGCAAAATTCGCAAG-CTGAGGATCG
66 CCACGAAATGACG-GTGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCGCAAGTC-GAGGATCG
* * * * *
1293845 GCCCGGTCCCTTCTGCGTGCTACCGATCCTGCTGTCGCAACCCTCGGTCCGGTCCAATCTTAGAC
129 ACCCGGTCCCTTCTGCGTGCTACCGATCCTACTATCACAACCCTCGATCCGGTCCAATCTTAGAC
* **
1293910 TGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCCAAGTCAACCCATGAAAT
194 TAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCCAAGTCAACCCACAAAAT
* * *
1293975 GAGCGTGTGGGCATTCAGTCGACAGGAGAGGTCGACCGGAGAGGCATAATGCGCAAGCCGAGGAT
259 GAGCGTGCGGG---TCAGTCGAC----GAGGCCGACCGGAGAGGCATAATGCGCAAGCAGAGGAT
* * ** * *
1294040 TAGCCTGATCCCCCTCTGTGTGTTGTCGATCCCATTGTAGGTCCT
317 CAGCCCGATCCCCCTCTGCATGCTGTCGATCCCACTGTAGGTCCT
* * * * * * *
1294085 GCTGCCATAACCCTCGGTCTGACT-AGGGCTTGGACATGGAATGAACTCCGTACT-CCTAGGTCA
1 GCTACCACAACCCTCGATCCGGCTGA-GGCTTAGACATGGAATGAACTCCGTA-TGCCTAAGTCA
* * * *
1294148 ACCCATGAAACGACGGTGCGGGCACTCAGCCAGTCGGAGAGGCAAAATGCGTAAGTCGAGGATCG
64 ACCCACGAAATGACGGTGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCG
* * * *
1294213 ACCTGGTCCCCTCTTACGTGCTGTCGATCCTTCTGCTGGTCCTACTATCACAACCCTCGATCTGG
129 ACCCGGT--CC-CTT-C-TGC-GT-G---CTAC--C-GATCCTACTATCACAACCCTCGATCCGG
* * * * * * *
1294278 TTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTTCGTATGCCTATGT
181 TCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCCAAGT
*
1294343 CAACCCACAAAATGAGCGTGCGGG-C-G-C-TC-A-GCCGACCGGAGAGGCATAATGCGCAAGCT
246 CAACCCACAAAATGAGCGTGCGGGTCAGTCGACGAGGCCGACCGGAGAGGCATAATGCGCAAGC-
* * *
1294402 AG-GGATCAGCCCGATCCCCTTCTGCATGCTG-CTGATCCCGCTGTCGGTCCT
310 AGAGGATCAGCCCGATCCCCCTCTGCATGCTGTC-GATCCCACTGTAGGTCCT
*
1294453 GCTACCACAACCCTCGATCCGGCTGAGGCTTAGACATGGAATGAACTCTGTATGCCTAAGTCAAC
1 GCTACCACAACCCTCGATCCGGCTGAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAAC
*
1294518 CCACGAAATGAAC-GTGCGGGCACTCAGCCGGTCGGAGAGGCAGAATGCGCAAGTCG
66 CCACGAAATG-ACGGTGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCGCAAGTCG
1294574 GGGACAGCCC
Statistics
Matches: 402, Mismatches: 64, Indels: 45
0.79 0.13 0.09
Matches are distributed among these distances:
367 64 0.16
368 212 0.53
369 6 0.01
370 2 0.00
371 3 0.01
372 1 0.00
373 3 0.01
374 3 0.01
375 2 0.00
376 1 0.00
377 1 0.00
378 3 0.01
380 1 0.00
381 100 0.25
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (361 bp):
GCTACCACAACCCTCGATCCGGCTGAGGCTTAGACATGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAATGACGGTGCGGGCACTCAGCCGGTCGGAGAGGCAAAATGCGCAAGTCGAGGATCGAC
CCGGTCCCTTCTGCGTGCTACCGATCCTACTATCACAACCCTCGATCCGGTCCAATCTTAGACTA
GGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCGTATGCCCAAGTCAACCCACAAAATGA
GCGTGCGGGTCAGTCGACGAGGCCGACCGGAGAGGCATAATGCGCAAGCAGAGGATCAGCCCGAT
CCCCCTCTGCATGCTGTCGATCCCACTGTAGGTCCT
Found at i:1294834 original size:158 final size:158
Alignment explanation
Indices: 1294310--1294931 Score: 587
Period size: 158 Copynumber: 3.9 Consensus size: 158
1294300 ACTCCGTATG
* * * *
1294310 CTTAGACTGGGGATGAACTTCGTATGCCTATGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
* * * * *
1294375 CGACCGGAGAGGCATAATGCGCAAG-CTAGGGATC-AGCCCGATCCCCTTCTGCATGCTGCTGAT
66 CGGCCGGAGAGGCAGAATGCGCAAGTC-GGGGATCGA-CCTGGT-CCC--C--C---CTGC--AT
* * * *
1294438 CCCGCTGTCGGTCCTGCTACCACAACCCTCGATCCG-GCTGAGG
119 ---GCTGTCGATCCTGCTACCACAACCCTTGATCCGATCTGA-T
* * * *
1294481 CTTAGACAT-GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCACTCAG
1 CTTAGA-ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* ** * *
1294545 CCGGTCGGAGAGGCAGAATGCGCAAGTCGGGGA-C-AGCCCAGTCCCCCCTGCTTG-TCATCGAT
65 CCGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGA-CCTGGTCCCCCCTGCATGCT-GTCGAT
** * **
1294607 CCTATTGCCGTAACCCTTGATCCGATCTGAT
128 CCTGCTACCACAACCCTTGATCCGATCTGAT
* *
1294638 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTGAGC
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
** * * *
1294703 CAACCGGAGAGGCAGAATGGGCAAGTCGAGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCTT
66 CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCT
* * *
1294768 GCTACCACAA-CCTTCGGTTCGGT-TCGAT
131 GCTACCACAACCCTT-GATCCGATCT-GAT
** * * *
1294796 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATGAGCGTGCAGGCGCTCAGT
1 CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
* * *
1294861 CGGCCGGAGAGGCAGAATGCGTAAGTCGGGGATCGACCTGGTCCCCACTGCGTGCTGTCGATCCT
66 CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCT
1294926 GCTACC
131 GCTACC
1294932 GGACCTGCTA
Statistics
Matches: 377, Mismatches: 64, Indels: 33
0.80 0.14 0.07
Matches are distributed among these distances:
156 3 0.01
157 111 0.29
158 161 0.43
159 2 0.01
160 1 0.00
162 4 0.01
165 1 0.00
167 1 0.00
169 3 0.01
170 7 0.02
171 81 0.21
172 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCTGGTCCCCCCTGCATGCTGTCGATCCT
GCTACCACAACCCTTGATCCGATCTGAT
Found at i:1295497 original size:26 final size:26
Alignment explanation
Indices: 1295468--1295520 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1295458 CCGATCCAAT
1295468 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1295494 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1295520 C
1 C
1295521 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1295891 original size:26 final size:26
Alignment explanation
Indices: 1295855--1295907 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1295845 CCAGTCTGAT
1295855 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
1295881 CTTAGATTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1295907 C
1 C
1295908 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1296405 original size:26 final size:25
Alignment explanation
Indices: 1296369--1296420 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
1296359 TCGGTTCGAT
*
1296369 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGG-ATGAACTCCGTATG
* *
1296395 CTTAGACTGGGGTGAACTCTGTATG
1 CTTAGACTGGGATGAACTCCGTATG
1296420 C
1 C
1296421 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGATGAACTCCGTATG
Found at i:1297095 original size:26 final size:26
Alignment explanation
Indices: 1297066--1297118 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1297056 CCAGTTCGAT
* *
1297066 CTTAGACTGGGTATGAACTTCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
*
1297092 CTTAGGCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
1297118 C
1 C
1297119 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:1298114 original size:26 final size:26
Alignment explanation
Indices: 1298078--1298130 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1298068 CCAGTTCGAT
*
1298078 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1298104 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1298130 C
1 C
1298131 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1298840 original size:26 final size:26
Alignment explanation
Indices: 1298802--1298854 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1298792 GGCTCAAAAT
1298802 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1298828 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1298854 C
1 C
1298855 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1299064 original size:158 final size:158
Alignment explanation
Indices: 1298828--1299328 Score: 508
Period size: 158 Copynumber: 3.2 Consensus size: 158
1298818 ACTCCGTATG
* * *
1298828 CTTAGAC-ATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCTGGCCCTCAG
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
1298892 TCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCATGCTGTCGATCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCG-TCCCCCCTGCATGCTATCGATCC
* *
1298957 TGCTACCACAACGCTCGGTCCGGTCTGAT
130 TGCTGCCACAACCCTCGGTCCGGTCTGAT
* * *
1298986 CTTAGACTA-GGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAG
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * ** *
1299050 CCGGTCGGAGAGGCATAATGCGTAAGCCGAGGATCGGTCAGTCCCCTTCAGTGTGCTATCGGTCC
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGTCCCC-CCTGCATGCTATCGATCC
* **
1299115 TGCTGCCACAACCCTCGGTCTGG-CTAGGG
130 TGCTGCCACAACCCTCGGTCCGGTCT-GAT
* * * * *
1299144 CTTAGA-TATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGGGTGCGGACGCTCAG
1 CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * * *
1299208 CCAGTTGGAGAGGCAGAATGTGCAAGCTGGGGATTGGCTCGGTTCCCCCTGCATGCTACCGATCT
66 CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGC-CCGTCCCCCCTGCATGCTATCGATCC
* * * *
1299273 TGCTGTCGCAACCCTCGGTCCGATCCGAT
130 TGCTGCCACAACCCTCGGTCCGGTCTGAT
* *
1299302 CTTAGACT-GGGAATGAACTCTGTATGC
1 CTTAGACTATGGAATGAACTCCGTATGC
1299329 TTAGACTAGG
Statistics
Matches: 274, Mismatches: 62, Indels: 14
0.78 0.18 0.04
Matches are distributed among these distances:
157 9 0.03
158 256 0.93
159 9 0.03
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (158 bp):
CTTAGACTATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGTCCCCCCTGCATGCTATCGATCCT
GCTGCCACAACCCTCGGTCCGGTCTGAT
Found at i:1299826 original size:159 final size:159
Alignment explanation
Indices: 1299535--1299927 Score: 370
Period size: 159 Copynumber: 2.5 Consensus size: 159
1299525 TTAGACATAG
* * ** **
1299535 AATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGTGGGTACTCAGCTGGTCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGGGTGCAGGTACTCAGCTGACCGGAGAG
* * * * * * ***
1299600 GCAGAATGCGTAAGCCGGGGACCGGTCCGATCCCTCTCTGCGTGCTGTCAGTCCTGCTACTGTAA
66 GCAGAATGCGCAAGCCAGGGACCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAA
1299665 CCCTTGGTTCGATCTGATCTTAGACTGAA
131 CCCTTGGTTCGATCTGATCTTAGACTGAA
* * * * * *
1299694 AATGAACTCCGTATGCCTAAGTCAACCAATGAAATGGGGGTGCAGGTGCTGAGCTGACCGGAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGGGTGCAGGTACTCAGCTGACCGGAGAG
* * *
1299759 GCATAATGCGCAAGCCAGGGATCGGCCC-AGTCCCCCTCTGCGTGCTGCCAGTCCCGCTGCCACA
66 GCAGAATGCGCAAGCCAGGGACCGGCCCGA-TCCCCCTCTGCGTGCTGCCAGTCCCGCTACCACA
* * * *
1299823 ACCCTCGGTCCGA-CTAGGGT-TTAGACATG-G
130 ACCCTTGGTTCGATCT--GATCTTAGAC-TGAA
* * * *
1299853 AATGAACTCTC-TATGCCTAAGCCAACCCACGAAAC-AGGCATGCGGGCT-CTCAG-TCGATCGG
1 AATGAACTC-CGTATGCCTAAGCCAACCAACGAAACGAGG-GTGCAGG-TACTCAGCT-GACCGG
1299914 AGAGGCAGAATGCG
62 AGAGGCAGAATGCG
1299928 TAAGTTGAGA
Statistics
Matches: 188, Mismatches: 38, Indels: 16
0.78 0.16 0.07
Matches are distributed among these distances:
158 6 0.03
159 176 0.94
160 6 0.03
ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20
Consensus pattern (159 bp):
AATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGGGTGCAGGTACTCAGCTGACCGGAGAG
GCAGAATGCGCAAGCCAGGGACCGGCCCGATCCCCCTCTGCGTGCTGCCAGTCCCGCTACCACAA
CCCTTGGTTCGATCTGATCTTAGACTGAA
Found at i:1300032 original size:26 final size:27
Alignment explanation
Indices: 1300003--1300057 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
1299993 ATCCAATCTT
1300003 AGATTGGGAATGAACTCCGTATG-CTA
1 AGATTGGGAATGAACTCCGTATGCCTA
*
1300029 AGATTGGGGATGAACTCCGTATGCCTA
1 AGATTGGGAATGAACTCCGTATGCCTA
1300056 AG
1 AG
1300058 CCAACCCATG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (27 bp):
AGATTGGGAATGAACTCCGTATGCCTA
Found at i:1300211 original size:698 final size:696
Alignment explanation
Indices: 1298802--1300222 Score: 1658
Period size: 698 Copynumber: 2.0 Consensus size: 696
1298792 GGCTCAAAAT
*
1298802 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCC
* * *
1298867 ATGAAACGAGCGTGCTGGCCCTCAGTCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCC
66 ACGAAACGAGCGTGCTGGCACTCAGTCGACCGGAGAGGCAAAATGCGCAAGCCGGGGACCGACCC
* * *
1298932 GATCCCCCCTGCATGCTGTCGATCCTGCTACCACAACGCTCGGTCCGGTCTGATCTTAGACTAGG
131 GATCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCCGATCTGATCTTAGACTAGA
* * **
1298997 AATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCGGTCGGAGAG
196 AATGAACTCCGTATGCATAAGTCAACCAACGAAACGAGCGTGCAGGCGCTGAGCCGACCGGAGAG
* * * * * * *
1299062 GCATAATGCGTAAGCCGAGGATCGGTCAGTCCCCTTCAGTGTGCTATCGGTCCTGCTGCCACAAC
261 GCATAATGCGCAAGCCGAGGATCGGCCAGTCCCCCTCAGCGTGCTACCAGTCCCGCTGCCACAAC
* * * *
1299127 CCTCGGTCTGGCTAGGGCTTAGATATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGA
326 CCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATCA
* * * * * * *
1299192 GGGTGCGGACGCTCAGCCAGTTGGAGAGGCAGAATGTGCAAGCTGGGGATTGGCTCGGTTCCCCC
391 GGATGCGGACGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCTGAGAATCGGCTCGGTCCCCCC
* * *
1299257 TGCATGCTACCGATCTTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTC
456 TACATGCTACCGATCCTGCTGTCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTC
* * ** * * **
1299322 TGTATGCTTAGACTAGGGATGAACTACATATTTCTAAGTCAACCCATGAAACAAACATGCGGGTG
521 CGTATGCTAAGACTAGGGATGAACTACATATGCCTAAGCCAACCCATGAAACAAACATACGGGCA
* * * *
1299387 CTCAACCGACCGAAGAGGTAGATTACGCAAGCCGAGGATCAACCCAGTTCCCCCTACGTGCTATC
586 CTCAACCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCAACCCAGTCCCCCCTACGTCCTATC
* * * ** * *
1299452 GATCATGCTGCTGGTCCTGCTGCCGTAACCCTCGGTCTAGTTCGAT
651 GATCATGCTACCGGTCCTGCAGCCACAACCCTCGGTCTAGCTCGAG
*
1299498 CTTAGATTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCC
* * ** * * **
1299563 ACGAAACGAGTGTG-TGGGTACTCAG-CTGGTCGGAGAGGCAGAATGCGTAAGCCGGGGACCGGT
66 ACGAAACGAGCGTGCT-GGCACTCAGTC-GACCGGAGAGGCAAAATGCGCAAGCCGGGGACCGAC
* * *** * *
1299626 CCGATCCCTCTCTGCGTGCTGTC-AGTCCTGCTACTGTAACCCTTGGTTCGATCTGATCTTAGAC
129 CCGATCCC-CCCTGCATGCTGTCGA-TCCTGCTACCACAACCCTCGGTCCGATCTGATCTTAGAC
* * * * * * *
1299690 T-GAAAATGAACTCCGTATGCCTAAGTCAACCAATGAAATGGGGGTGCAGGTGCTGAGCTGACCG
192 TAG-AAATGAACTCCGTATGCATAAGTCAACCAACGAAACGAGCGTGCAGGCGCTGAGCCGACCG
* *
1299754 GAGAGGCATAATGCGCAAGCC-AGGGATCGGCCCAGTCCCCCTCTGCGTGCTGCCAGTCCCGCTG
256 GAGAGGCATAATGCGCAAGCCGA-GGATCGG-CCAGTCCCCCTCAGCGTGCTACCAGTCCCGCTG
* *
1299818 CCACAACCCTCGGTCCGACTAGGGTTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCAC
319 CCACAACCCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAC
* * * * * * *
1299883 GAAA-CAGGCATGCGGGCTCTCAGTC-GATCGGAGAGGCAGAATGCGTAAGTTGAGAATC-GATC
384 AAAATCAGG-ATGCGGACGCTCAGCCAG-TCGGAGAGGCAGAATGCGCAAGCTGAGAATCGGCT-
* * * *
1299945 CGGTCCCCCCTACGTGCTGCCGATCCTGCTGTCGCAACCCTCTGTCCGATCCAATCTTAGATTGG
446 CGGTCCCCCCTACATGCTACCGATCCTGCTGTCGCAACCCTCGGTCCGATCCAATCTTAGACTGG
* * * * * *
1300010 GAATGAACTCCGTATGCTAAGATTGGGGATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG
511 GAATGAACTCCGTATGCTAAGACTAGGGATGAACTACATATGCCTAAGCCAACCCATGAAACAAA
* * * ** * * * *
1300075 CATACGGGCACTCAATCGGCCGAAGAGGCATAATGGGCAAGCTGGGGATCAGCCCGGTCCCCCTC
576 CATACGGGCACTCAACCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCAACCCAGTCCCCC-C
* * * * * *
1300140 TGCGTCCTATCGATCCTGCTACCGGTCCTGCAGCCACAA-CCTCAGT-TCGGCTGGGG
640 TACGTCCTATCGATCATGCTACCGGTCCTGCAGCCACAACCCTCGGTCT-AGCTCGAG
1300196 CTTAGACAT-GGAATGAACTCCGTATGC
1 CTTAGAC-TGGGAATGAACTCCGTATGC
1300223 CTAAGCCAAC
Statistics
Matches: 601, Mismatches: 111, Indels: 24
0.82 0.15 0.03
Matches are distributed among these distances:
695 2 0.00
696 122 0.20
697 128 0.21
698 316 0.53
699 33 0.05
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (696 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACATAGAATGAACTCCGTATGCCTAAGCCAACCC
ACGAAACGAGCGTGCTGGCACTCAGTCGACCGGAGAGGCAAAATGCGCAAGCCGGGGACCGACCC
GATCCCCCCTGCATGCTGTCGATCCTGCTACCACAACCCTCGGTCCGATCTGATCTTAGACTAGA
AATGAACTCCGTATGCATAAGTCAACCAACGAAACGAGCGTGCAGGCGCTGAGCCGACCGGAGAG
GCATAATGCGCAAGCCGAGGATCGGCCAGTCCCCCTCAGCGTGCTACCAGTCCCGCTGCCACAAC
CCTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATCA
GGATGCGGACGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCTGAGAATCGGCTCGGTCCCCCC
TACATGCTACCGATCCTGCTGTCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTC
CGTATGCTAAGACTAGGGATGAACTACATATGCCTAAGCCAACCCATGAAACAAACATACGGGCA
CTCAACCGACCGAAGAGGCAGAATACGCAAGCCGAGGATCAACCCAGTCCCCCCTACGTCCTATC
GATCATGCTACCGGTCCTGCAGCCACAACCCTCGGTCTAGCTCGAG
Found at i:1300396 original size:26 final size:26
Alignment explanation
Indices: 1300367--1300419 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1300357 CCGGTCTGAT
* *
1300367 CTTAGATATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCCGTATG
1300393 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
1300419 C
1 C
1300420 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:1301721 original size:171 final size:171
Alignment explanation
Indices: 1301430--1301759 Score: 439
Period size: 171 Copynumber: 1.9 Consensus size: 171
1301420 AACTTCGTAT
* * * * ***
1301430 GCTTAGAAATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCTTGCGGGTGCTCAG
1 GCTTAGAAATGGAATGAACTCCGTATACCAAAGCCAACCCACGAAACGAGCGTGCGGCCACTCAG
* * * *
1301495 CCCACCGGAGAGGCATAATGCGCAAGCTGGGGATCAGCCCGATCCCCCTCTGCATGCT-TCCAAT
66 CCCACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCAGATCCCCCCCTGCATGCTGT-CAAT
1301559 -CTCGCTACTGGTCCTGCTACCACAACCCTCGGTCCGACTGGG
130 CCT-GCTACTGGTCCTGCTACCACAACCCTCGGTCCGACTGGG
* * * *
1301601 GCTTAGACATGGAATGAACTCCGTATACCAAAGCCAACCCACGAAATGAGCGTGCTGCCACTGAG
1 GCTTAGAAATGGAATGAACTCCGTATACCAAAGCCAACCCACGAAACGAGCGTGCGGCCACTCAG
* * * * *
1301666 CCGACCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCAGGTCCCCCCCTGCATGCTGTCGATC
66 CCCACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCAGATCCCCCCCTGCATGCTGTCAATC
*
1301731 CTGCTACTGGTCCTGCTACCGCAACCCTC
131 CTGCTACTGGTCCTGCTACCACAACCCTC
1301760 AATCCAGTCT
Statistics
Matches: 136, Mismatches: 21, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
171 133 0.98
172 3 0.02
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (171 bp):
GCTTAGAAATGGAATGAACTCCGTATACCAAAGCCAACCCACGAAACGAGCGTGCGGCCACTCAG
CCCACCGGAGAGGCAGAATGCGCAAGCCGGGGATCAGCCAGATCCCCCCCTGCATGCTGTCAATC
CTGCTACTGGTCCTGCTACCACAACCCTCGGTCCGACTGGG
Found at i:1302166 original size:26 final size:26
Alignment explanation
Indices: 1302114--1302166 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1302104 CCGATCTGAT
* *
1302114 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCGAATG
*
1302140 CTTAGACTGGGGATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
1302166 C
1 C
1302167 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:1302885 original size:26 final size:26
Alignment explanation
Indices: 1302847--1302899 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1302837 GGCTCAAACT
*
1302847 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
1302873 CTTAGACAT-GGAATCAACTCCGTATG
1 CTTAGAC-TGGGAATCAACTCCGTATG
1302899 C
1 C
1302900 CTAAGCCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:1303909 original size:159 final size:158
Alignment explanation
Indices: 1303734--1304034 Score: 370
Period size: 159 Copynumber: 1.9 Consensus size: 158
1303724 CTTAGACTGG
* * * * * * **
1303734 GAATGAACTCCGTATGCCTAAGTCGACCAACGAAACGAGCGTTCGGGTGCTGAGCCGATCGGAGA
1 GAATGAACTCCCTATGCCTAAGCCAACCAACAAAACGAGCGTGCAGCAGCTGAGCCGATCGGAGA
* * *
1303799 GGCATAATGCACAAGCCGGGGATCGG-TCCGGTCCCGCTCTGCGTGCTGCCGATCCCACTGCCAC
66 GGCAGAATGCACAAGCCGGGGATCGGCT-CGGTCCC-CCCTGCGTGATGCCGATCCCACTGCCAC
1303863 AACCCTCAGTCTGGCTGGGGCTTAAACACA
129 AACCCTCAGTCTGGCTGGGGCTTAAACACA
* * * * * *
1303893 GAATGAACTCCCTATGCCTAAGCCAACCCATAAAACGGGCGTGCAGCAGCTTAGCCGGTCGGAGG
1 GAATGAACTCCCTATGCCTAAGCCAACCAACAAAACGAGCGTGCAGCAGCTGAGCCGATCGGAGA
* * * ** *
1303958 GGCAGAATGCGCAAGTCGGGGATCGGCTCGGTCCCCCCTGCGTGATGTCGATCCTGCTGCCGCAA
66 GGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGATGCCGATCCCACTGCCACAA
1304023 CCCTCAGTCTGG
131 CCCTCAGTCTGG
1304035 TCCGATCTGA
Statistics
Matches: 118, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
158 36 0.31
159 81 0.69
160 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.30, T:0.18
Consensus pattern (158 bp):
GAATGAACTCCCTATGCCTAAGCCAACCAACAAAACGAGCGTGCAGCAGCTGAGCCGATCGGAGA
GGCAGAATGCACAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGATGCCGATCCCACTGCCACAA
CCCTCAGTCTGGCTGGGGCTTAAACACA
Found at i:1304075 original size:26 final size:26
Alignment explanation
Indices: 1304046--1304098 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1304036 CCGATCTGAT
1304046 CTTAGACTGGGAATGAACT-CTGTATG
1 CTTAGACTGGGAATGAACTAC-GTATG
* *
1304072 CTTAGATTGGGGATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
1304098 C
1 C
1304099 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:1304429 original size:171 final size:171
Alignment explanation
Indices: 1304071--1304431 Score: 377
Period size: 171 Copynumber: 2.1 Consensus size: 171
1304061 AACTCTGTAT
* * * * * * *
1304071 GCTTAGATTGGGGATGAACTACGTATGCCTAAGTCAACCCACGAAAAGAGCATACGGGCATTCAG
1 GCTTAGACTGGGAATGAACCACGTATGCCTAAGCCAACCAACGAAAAGAGCATACGGGCACTCAA
* * * * * *
1304136 CTGGCCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCTGGTCCCCCTCTATGTGCTGTCGATC
66 CTGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTACGTGCTATCGATC
** ** * *
1304201 CCGTTGTCGGTCCTGCTGCCACAACCCTCGATCCGGCTGGA
131 CCACTGTCGGTCCAACTACCACAACCCTCGATCCGGCTCGA
* * * * *
1304242 GCTTAGGCAT-GGAATGAACCCCGTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGTACTCA
1 GCTTAGAC-TGGGAATGAACCACGTATGCCTAAGCCAACCAACGAAAAGAGCATACGGGCACTCA
* *
1304306 ACTGGCCGAAAAGGCAGAATGCGCAAGTCGGGGATCGGCCTGGTCTCCCC-CTACGTGCTATCGA
65 ACTGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTC-CCCCTCTACGTGCTATCGA
* ** * * *
1304370 TCCTACTG-CTGGTCCAACTACCGTAACCTTCGGTCCGGTTCGA
129 TCCCACTGTC-GGTCCAACTACCACAACCCTCGATCCGGCTCGA
*
1304413 TCTTAGACTGGGAATGAAC
1 GCTTAGACTGGGAATGAAC
1304432 TCAGTATCCT
Statistics
Matches: 152, Mismatches: 34, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
170 2 0.01
171 145 0.95
172 5 0.03
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (171 bp):
GCTTAGACTGGGAATGAACCACGTATGCCTAAGCCAACCAACGAAAAGAGCATACGGGCACTCAA
CTGGCCGAAAAGGCAGAATGCGCAAGCCGGGGATCAGCCTGGTCCCCCTCTACGTGCTATCGATC
CCACTGTCGGTCCAACTACCACAACCCTCGATCCGGCTCGA
Found at i:1304833 original size:159 final size:157
Alignment explanation
Indices: 1304440--1304941 Score: 456
Period size: 158 Copynumber: 3.2 Consensus size: 157
1304430 ACTCAGTATC
* * * * *
1304440 CTTAGACATGGAATGAACTTCGTATGGCTAAGCCAACCCACGAAACGAGCGTACGGGCGCTCAAC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGCGTGT-CGGGCGCTCAGC
* * * *
1304505 CGGTCGGAGAGGTAGAATGCGCAAGCCAGGGATCGGCCTGATCCCCCCTGCGTGCTGTCGATCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCCT
* * *
1304570 GCTGCCGCAACCATCGATTTGATCCGAT
130 GCTACCACAACCATCGATTTGATCCGAG
* * *
1304598 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATTAGCGTGT-GGGCGCTGA
1 CTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA-T-GCGTGTCGGGCGCTCA
* * * *
1304661 GCCGATCGGAGAGGCATAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCTCTGCATCCTGTTGAT
63 GCCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCC-CTGCATGCTGTCGAT
* * * * *
1304726 -CTCGCTACCACAACCCTCGGTTTG-GCTGGGG
127 CCT-GCTACCACAACCATCGATTTGATC-CGAG
* * * * *
1304757 CTTAGACATGGAATGAACTCCCTATGCCTTAGCCAACTCACGAAATGCGTGTGCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGCGTGT-CGGGCGCTCAGC
* * * * ** * * *
1304822 AGGCCGAAGAGGCAGAATGCGTAAATCGGGGATTGGCTCGGTCCCCCCTGCATGCTGTCGATCCT
65 CGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCCT
* * * * *** * *
1304887 GTTGCCGCAACCCTCGATCCAATCTGAT
130 GCTACCACAACCATCGATTTGATCCGAG
*
1304915 CTTAGAC-TGGGAATGAACTTCGCATGC
1 CTTAGACAT-GGAATGAACTTCGTATGC
1304942 TTAGACTGGG
Statistics
Matches: 273, Mismatches: 59, Indels: 24
0.77 0.17 0.07
Matches are distributed among these distances:
157 8 0.03
158 145 0.53
159 115 0.42
160 5 0.02
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAATGCGTGTCGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGGCCCGGTCCCCCCTGCATGCTGTCGATCCTG
CTACCACAACCATCGATTTGATCCGAG
Found at i:1304967 original size:26 final size:26
Alignment explanation
Indices: 1304915--1304967 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1304905 CCAATCTGAT
* *
1304915 CTTAGACTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTCCACATG
* *
1304941 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCACATG
1304967 C
1 C
1304968 ATAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCACATG
Found at i:1305678 original size:26 final size:26
Alignment explanation
Indices: 1305640--1305690 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1305630 GGCTCAAACT
1305640 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1305666 CTTAGACAT-GGAATGAACTCCGTAT
1 CTTAGAC-TGGGAATGAACTCCGTAT
1305691 CCCTAAGCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1311207 original size:26 final size:26
Alignment explanation
Indices: 1311157--1311209 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1311147 CCAGTCCGAT
**
1311157 CTTAGACTCGGAATGAACTTTGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
* *
1311183 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
1311209 C
1 C
1311210 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:1311725 original size:26 final size:26
Alignment explanation
Indices: 1311675--1311726 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
1311665 TGCATGCTGT
***
1311675 TTAGACTGGGAATGAACTTTGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
1311701 TTAGACTGGGGATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
1311727 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:1312552 original size:26 final size:26
Alignment explanation
Indices: 1312523--1312575 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1312513 CCAGTCTGAT
*
1312523 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1312549 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1312575 C
1 C
1312576 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1313329 original size:196 final size:196
Alignment explanation
Indices: 1312991--1313345 Score: 516
Period size: 196 Copynumber: 1.8 Consensus size: 196
1312981 CGTGGCACAA
* *
1312991 AATCTTACACTGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
1 AATCTTACACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCATATGCCTAAGCCAA
* * *
1313056 CCCATGAAACAAATGTGCGATCGCTCAACCGGCCAGAGAGGCAAAATGCACAAGCCGGGGATCAG
66 CCCATGAAACAAATGCGCGATCGCTCAACCGGCCAGAGAGGCAAAATGCACAAGCCAGGGACCAG
* *
1313121 CTCGATCCCCCCTGCATGCTGTCGATCATACTGCTGGTCCTACTATCGTAACCCTCGATCCGGTC
131 CTCGAGCCCCCCTGCATACTGTCGATCATACTGCTGGTCCTACTATCGTAACCCTCGATCCGGTC
1313186 C
196 C
* * * *
1313187 AATCTTAGATTGGGAATGAACTCTGTATGCTTAAACTTGGAATGAACTCCATATGCCTAAGCCAA
1 AATCTTACACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCATATGCCTAAGCCAA
* * * * *
1313252 CCCATGAAACGAGCATGCG-GGT-GCTCAACCGGCTAGAGAGGCAGAATGCACAAGCTAGGGACC
66 CCCATGAAAC-A-AATGCGCGATCGCTCAACCGGCCAGAGAGGCAAAATGCACAAGCCAGGGACC
* *
1313315 GGCTCGAGCCCCCCTGCCTACTGTCGATCAT
129 AGCTCGAGCCCCCCTGCATACTGTCGATCAT
1313346 GCTATCACAA
Statistics
Matches: 139, Mismatches: 18, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
196 132 0.95
197 3 0.02
198 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (196 bp):
AATCTTACACTGGGAATGAACTCCGTATGCTTAAACATGGAATGAACTCCATATGCCTAAGCCAA
CCCATGAAACAAATGCGCGATCGCTCAACCGGCCAGAGAGGCAAAATGCACAAGCCAGGGACCAG
CTCGAGCCCCCCTGCATACTGTCGATCATACTGCTGGTCCTACTATCGTAACCCTCGATCCGGTC
C
Done.