Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 13 of 93
Found at i:1313959 original size:159 final size:157
Alignment explanation
Indices: 1313517--1313960 Score: 418
Period size: 157 Copynumber: 2.8 Consensus size: 157
1313507 TGTCGGTCCT
* *
1313517 GCTGCCACAACACTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCA-CTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *** * * *
1313582 CCATGAAAC-GAGCGTACGGGCTCTCAGCCAATTGGAGAGGCAGAATGTGCAAGTTGGGGATC-A
65 CCATGAAACAGAGCGT-CAGGCACTCAGCCGACCAGAGAGGTAGAATGCGCAAGTCGGGGATCGA
* * *
1313645 GCCTGGTCTCCCTTGGTGCTGTTGATCTT
129 GCCTGGTCCCCCTTGGTACTGTTGATCTG
* **** * **
1313674 GCTGCCACAACCCTCGGTCCAGTCCAATCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTTAA
1 GCTGCCACAACCCTCGGTCCACTGGGGT-TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
1313738 CCCATGAAACA-AGCGTCCGAGCATTGAGCCCGTCGA-AGAGGTATAATGCGCAAGTCGAGGATC
64 CCCATGAAACAGAGCGTCAG-GCACTCAG-CCGACCAGAGAGGTAGAATGCGCAAGTCGGGGATC
*
1313801 GA-CCTGGTCCCCCTCTGCGTACTGTTGGT-TCG
127 GAGCCTGGTCCCCCT-TG-GTACTGTTGATCT-G
* *
1313833 GCTTCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCC-ACTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
1313898 CCATGAAACAGA-CGTGCAGGCGCTCAGTCGACCAGAGAGGTAGAATGCGCAAGCCGGGGATCG
65 CCATGAAACAGAGCGT-CAGGCACTCAGCCGACCAGAGAGGTAGAATGCGCAAGTCGGGGATCG
1313961 GCCCAGTCCC
Statistics
Matches: 225, Mismatches: 48, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
156 4 0.02
157 103 0.46
158 10 0.04
159 101 0.45
160 7 0.03
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTGCCACAACCCTCGGTCCACTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CATGAAACAGAGCGTCAGGCACTCAGCCGACCAGAGAGGTAGAATGCGCAAGTCGGGGATCGAGC
CTGGTCCCCCTTGGTACTGTTGATCTG
Found at i:1313970 original size:159 final size:156
Alignment explanation
Indices: 1313517--1313972 Score: 420
Period size: 159 Copynumber: 2.9 Consensus size: 156
1313507 TGTCGGTCCT
* *
1313517 GCTGCCACAACACTCGGTCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCCA-CTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *** * * * *
1313582 CCATGAAAC-GAGCGTACGGGCTCTCAGCCAATTGGAGAGGCAGAATGTGCAAGTTGGGGATCAG
65 CCATGAAACAGAGCGT-CAGGCACTCAGCCGACCAGAGAGGTAGAATGCGCAAGTCGGGGATCGG
* * *
1313646 CCTGGTCTCCCTTGGTGCTGTTGATCTT
129 CCTGGTCCCCCTTGGTACTGTTGATCTG
* **** * **
1313674 GCTGCCACAACCCTCGGTCCAGTCCAATCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTTAA
1 GCTGCCACAACCCTCGGTCCACTGGGGT-TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
1313738 CCCATGAAACA-AGCGTCCGAGCATTGAGCCCGTCGA-AGAGGTATAATGCGCAAGTCGAGGATC
64 CCCATGAAACAGAGCGTCAG-GCACTCAG-CCGACCAGAGAGGTAGAATGCGCAAGTCGGGGATC
* *
1313801 GACCTGGTCCCCCTCTGCGTACTGTTGGT-TCG
127 GGCCTGGTCCCCCT-TG-GTACTGTTGATCT-G
* *
1313833 GCTTCCACAACCCTCGGTCCGACTGGGGTTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCC-ACTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
1313898 CCATGAAACAGA-CGTGCAGGCGCTCAGTCGACCAGAGAGGTAGAATGCGCAAGCCGGGGATCGG
65 CCATGAAACAGAGCGT-CAGGCACTCAGCCGACCAGAGAGGTAGAATGCGCAAGTCGGGGATCGG
**
1313962 CCCAGTCCCCC
129 CCTGGTCCCCC
1313973 ATGTGTGCTG
Statistics
Matches: 233, Mismatches: 53, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
156 4 0.02
157 103 0.44
158 9 0.04
159 110 0.47
160 7 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (156 bp):
GCTGCCACAACCCTCGGTCCACTGGGGTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CATGAAACAGAGCGTCAGGCACTCAGCCGACCAGAGAGGTAGAATGCGCAAGTCGGGGATCGGCC
TGGTCCCCCTTGGTACTGTTGATCTG
Found at i:1314048 original size:26 final size:26
Alignment explanation
Indices: 1314019--1314071 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1314009 CCGGTCCGAT
*
1314019 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1314045 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1314071 C
1 C
1314072 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1314460 original size:184 final size:186
Alignment explanation
Indices: 1314228--1314601 Score: 450
Period size: 188 Copynumber: 2.0 Consensus size: 186
1314218 TCTGGCTAGG
* ** * * *
1314228 GCTTAGATATGGAATGAACTCTGTATGGCTAAGCCAACCCACGAAACGAGCGT-GT-GGGTGCTC
1 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTAGTCGGGCGCTC
* * * * * *
1314291 AGCC-AGCTGGAGAGGCAGAATGTGCAAGCCTGGGATCGACACGGT-CCCCCATGAGTGCTGTCG
66 AACCGATC-AGAGAGGCAGAATGCGCAAGCCGGGGATCGACACGATCCCCCCATGAGTGCTGTCG
*** * * *
1314354 ATCCTGCTACTGTAACCCTCGGTCCGATCTGATCTTAGTCTAGGAATGAACTTCGTAT
130 ATCCTGCTACCACAACCCTCAGCCCGATCTGATCTTAGACTA-GAATGAACTTCGTAT
1314412 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTACGTGCGGGCGC
1 GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTA-GT-CGGGCGC
* * * * *
1314477 TCAACCGATCAGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCCCATGCGTGCTGTT
64 TCAACCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACACGATCCCCCCATGAGTGCTGTC
* * *
1314542 GATCTTGCTGCCACAACCCTCAGCCCGATCTGATCTTAGACTAGAATGAACTTTGTAT
129 GATCCTGCTACCACAACCCTCAGCCCGATCTGATCTTAGACTAGAATGAACTTCGTAT
1314600 GC
1 GC
1314602 CTAAGTCAAC
Statistics
Matches: 158, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
184 48 0.30
186 2 0.01
188 56 0.35
189 52 0.33
ACGTcount: A:0.25, C:0.27, G:0.26, T:0.22
Consensus pattern (186 bp):
GCTTAGAAATGGAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTAGTCGGGCGCTC
AACCGATCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACACGATCCCCCCATGAGTGCTGTCGA
TCCTGCTACCACAACCCTCAGCCCGATCTGATCTTAGACTAGAATGAACTTCGTAT
Found at i:1314738 original size:158 final size:157
Alignment explanation
Indices: 1314423--1314918 Score: 496
Period size: 158 Copynumber: 3.1 Consensus size: 157
1314413 CTTAGAAATG
**
1314423 GAATGAACTCCATATGCCTAAGCCAACCCAAGAAACGAGCGTACGTGCGGGCGCTCAACCGATC-
1 GAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGA--G--CGTGCGGGCGCTCAACCGATCG
* * * *
1314487 AGAGAGGCAGAATGCGTAAGCCGGGGATCGGCCCGATCCCCC-CATGCGTGCTGTTGATCTTGCT
62 A-AGAGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTC-TGCGTGCTGTCGATCCTGCT
* * * *
1314551 GCCACAACCCTCAGCCCGATCTGATCTTAGACTA
125 GCCACAACCCTCGGTCTG-GCTGATCTTAGACTA
* * * * * * *
1314585 GAATGAACTTTGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCAGGTGCTGAGCTGATCGAAGA
1 GAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGATCGAAGA
* * * ** *
1314650 GGCAGAATGCACAAGTCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTGTCGATCCCACTACCACA
66 GGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACA
* * *
1314715 ACGCTCGGTCTGGCTGAGGCTTAGACATG
131 ACCCTCGGTCTGGCTGA-TCTTAGAC-TA
** * * * * *
1314744 GAATGAACTCCCTATGCCTAAGCCAACCCATA-AAACGGGCGTACGGGCGTTCAACCGACCGGAG
1 GAATGAACTCTGTATGCCTAAGCCAACCCA-AGAAACGAGCGTGCGGGCGCTCAACCGATCGAAG
* * ** * **
1314808 AGGCAGAATTCGCAAGTCGGGGATCGGCCCGATCCCCCTC-ACGTGCTACCGATCCTGTTGCTGC
65 AGGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCAC
1314872 AACCCTCGGTCTGGTCTGATCTTAGACTA
130 AACCCTCGGTCTGG-CTGATCTTAGACTA
1314901 GGAATGAACTCTGTATGC
1 -GAATGAACTCTGTATGC
1314919 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 58, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
157 5 0.02
158 137 0.51
159 91 0.34
160 2 0.01
162 34 0.13
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GAATGAACTCTGTATGCCTAAGCCAACCCAAGAAACGAGCGTGCGGGCGCTCAACCGATCGAAGA
GGCAGAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACA
ACCCTCGGTCTGGCTGATCTTAGACTA
Found at i:1314921 original size:26 final size:26
Alignment explanation
Indices: 1314892--1314944 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1314882 CTGGTCTGAT
*
1314892 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
1314918 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
1314944 C
1 C
1314945 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:1315646 original size:26 final size:26
Alignment explanation
Indices: 1315617--1315669 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1315607 GGCTCAAAAT
1315617 CTTAGAC-TGGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
1315643 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
1315669 C
1 C
1315670 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:1316240 original size:158 final size:158
Alignment explanation
Indices: 1315642--1316265 Score: 621
Period size: 159 Copynumber: 3.9 Consensus size: 158
1315632 AACTCCATAT
* * * *
1315642 GCTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCTACGAAATGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * * * * * *
1315707 TCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CTCAGTCCCCAACTACGTGCTGTCGAT
66 CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGA-TCCCC-TCTACGTGCTGCCGAT
* *
1315771 CCTGCTGCCACAACCCTTGATTCGATCT-GA
129 CCTGCTGCCACAACCCTCGATTCGAT-TGGG
* * * * *
1315801 TCTTAGAC-TGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCA
* * * *
1315865 G-CAGGCCGAAGAGGCATAATGCGTAAGCCGAGGATC-GACTCGGTCCCCCTCTACGTGCTGCCG
65 GCCA-GCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCT-GAT-CCCCTCTACGTGCTGCCG
* * * * * *
1315928 GTCCCGCTGCCACAACCCTCAGTTTGGCTGGGG
127 ATCCTGCTGCCACAACCCTC-GATTCGATTGGG
* * * * *
1315961 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * * * * * * **
1316026 CCGGTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGGTCCCCCCTGTGTGCTGCCGATCC
66 CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCCTCTACGTGCTGCCGATCC
* *
1316091 TGCTGCCAAAACCCTCGA-TCCAGTTGGG
131 TGCTGCCACAACCCTCGATTCGA-TTGGG
* *
1316119 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * * ** * * *
1316184 CCAGTCGGAGAGGTAGAATGCGTAATTCGGGGATTGGCCTGATCCCCTTTACGTGCTGCTGATCC
66 CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCCTCTACGTGCTGCCGATCC
* *
1316249 TGCTACCGCAACCCTCG
131 TGCTGCCACAACCCTCG
1316266 GTCCGGTCCG
Statistics
Matches: 381, Mismatches: 73, Indels: 23
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 135 0.35
159 148 0.39
160 93 0.24
161 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCCTCTACGTGCTGCCGATCC
TGCTGCCACAACCCTCGATTCGATTGGG
Found at i:1316304 original size:158 final size:158
Alignment explanation
Indices: 1315642--1316304 Score: 627
Period size: 158 Copynumber: 4.2 Consensus size: 158
1315632 AACTCCATAT
* * *
1315642 GCTTAGACATGGAATGAACTCCGTATGCCTATGCCAACCTACGAAATGAGCATACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * * * * * *
1315707 TCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCAG-CTCAGTCCCCAACTACGTGCTGTCGAT
66 CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGA-TCCCC-TCTACGTGCTGCCGAT
* * * *
1315771 CCTGCTGCCACAACCCTTGATTCGATCTGA
129 CCTGCTGCCACAACCCTCGATCCGGTCGGA
* * * *
1315801 TCTTAGAC-TGAGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCATACGGGCGCTGA
1 GCTTAGACATG-GAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCA
* * * *
1315865 G-CAGGCCGAAGAGGCATAATGCGTAAGCCGAGGATC-GACTCGGTCCCCCTCTACGTGCTGCCG
65 GCCA-GCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCT-GAT-CCCCTCTACGTGCTGCCG
* * ** * *
1315928 GTCCCGCTGCCACAACCCTC-AGTTTGGCTGGGG
127 ATCCTGCTGCCACAACCCTCGA-TCCGG-TCGGA
* * * * * *
1315961 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * * * * * * **
1316026 CCGGTCGAAGAGGCAGAATGCGTAAGCCAGGGATCGACCCGGTCCCCCCTGTGTGCTGCCGATCC
66 CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCCTCTACGTGCTGCCGATCC
* * * *
1316091 TGCTGCCAAAACCCTCGATCCAGTTGGG
131 TGCTGCCACAACCCTCGATCCGGTCGGA
* * *
1316119 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
* * * ** * * *
1316184 CCAGTCGGAGAGGTAGAATGCGTAATTCGGGGATTGGCCTGATCCCCTTTACGTGCTGCTGATCC
66 CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCCTCTACGTGCTGCCGATCC
* * * *
1316249 TGCTACCGCAACCCTCGGTCCGGTCCGA
131 TGCTGCCACAACCCTCGATCCGGTCGGA
* *
1316277 TCTTAGAC-TGGGAATGAACTCTGTATGC
1 GCTTAGACAT-GGAATGAACTCCGTATGC
1316305 TTAGATTGGG
Statistics
Matches: 412, Mismatches: 80, Indels: 25
0.80 0.15 0.05
Matches are distributed among these distances:
157 1 0.00
158 164 0.40
159 153 0.37
160 90 0.22
161 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATACGGGCGCTCAG
CCAGCCGAAGAGGCAGAATGCGTAAGCCGGGGATCGGCCTGATCCCCTCTACGTGCTGCCGATCC
TGCTGCCACAACCCTCGATCCGGTCGGA
Found at i:1316314 original size:26 final size:26
Alignment explanation
Indices: 1316278--1316330 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1316268 CCGGTCCGAT
1316278 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
* *
1316304 CTTAGATTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
1316330 C
1 C
1316331 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:1317028 original size:159 final size:157
Alignment explanation
Indices: 1316682--1317077 Score: 427
Period size: 159 Copynumber: 2.5 Consensus size: 157
1316672 ACCTCCGTAT
**
1316682 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACAAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
* * ** ** * * * *
1316747 CTACCGGAGAGGCAGAATGCGCAAGCCAGGGATTGGCCTGGTCCCCCTTGCGTGCTATCGATCCT
66 CGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCAGTCCACCTAGCGTGCTACCGATCCA
* * *
1316812 GCTACCATAACCCTCGGTCCGGTCTGA
131 GCTACCACAACCCTCGATCCGGACTGA
* * * * *
1316839 TCTTAGAC-TAGGAATGAAGTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCA
** * ** * *
1316903 GTCGGTCGGAGAGGCATAATGCACAAGCTGGGGATCAGCCCAGTCCACCTCAGCGTGGTACCGGT
65 G-CGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCAGTCCACCT-AGCGTGCTACCGAT
* *
1316968 CCAGCTGCCACAACCCTCGATCC-GACTGGG
128 CCAGCTACCACAACCCTCGATCCGGACT-GA
* * *
1316998 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCA-
* *
1317063 GCGGCCGAAGAGGCA
65 GCGACCGGAGAGGCA
1317078 AAATACGCCA
Statistics
Matches: 195, Mismatches: 38, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
156 1 0.01
157 56 0.29
158 39 0.20
159 97 0.50
160 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGTGCTCAG
CGACCGGAGAGGCAGAATGCACAAGCCAGGGATCAGCCCAGTCCACCTAGCGTGCTACCGATCCA
GCTACCACAACCCTCGATCCGGACTGA
Found at i:1322985 original size:18 final size:18
Alignment explanation
Indices: 1322964--1323002 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
1322954 GGTAGGTGTG
*
1322964 CCAGGCACATCAGGTGCA
1 CCAGGCACATCAAGTGCA
1322982 CCAGGCACATCAAGTGCA
1 CCAGGCACATCAAGTGCA
1323000 CCA
1 CCA
1323003 ACAGGTGAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.36, G:0.23, T:0.10
Consensus pattern (18 bp):
CCAGGCACATCAAGTGCA
Found at i:1324447 original size:26 final size:26
Alignment explanation
Indices: 1324396--1324448 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1324386 CCGATCTGAT
*
1324396 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1324422 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
1324448 C
1 C
1324449 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1324676 original size:158 final size:156
Alignment explanation
Indices: 1324422--1324902 Score: 486
Period size: 158 Copynumber: 3.0 Consensus size: 156
1324412 ACTCTATATG
1324422 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCCGA-GCGCTCAA
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT--GAGGCGCTCAA
* * * * * *
1324486 CCGGTCGGAGAGGCAGAATGCGTAAGCGGGGGATCGGCTTGATCCCCCCTGCGTGCTGTCGATCC
64 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCC
*
1324551 TATTGTCGCAACCCTCGGTCTGGTCTGAT
129 TA-TGCCGCAACCCTCGGTCTGGTCTGAT
* * * * *
1324580 CTTAGAC-TGGGAATGAACTGCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTAGGCGTTGAA
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTG-AGGCGCTCAA
* * * * * *
1324644 CCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTGTGCGTGCTGCCAGTC
64 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCC-CTGCGTGCTGTC-G-A
* * * *
1324709 TCGCTA--CCGCAACCCTTGGTC-CGACTGAGG
126 TC-CTATGCCGCAACCCTCGGTCTGGTCTGA-T
* * * * * *
1324739 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGAGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAG-GCGCTCAAC
* * * * *
1324804 CGACCAAAGAGGCAGAATGTGCAAGCCAGGGATCGACTCGATCCCCTCTGCGTGCTGTCGATCCT
65 CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCCT
* * *
1324869 GCTGCCACAACCCTCAGTCTGGTCTGAT
130 -ATGCCGCAACCCTCGGTCTGGTCTGAT
*
1324897 CATAGA
1 CTTAGA
1324903 GTGGGAATGA
Statistics
Matches: 257, Mismatches: 52, Indels: 28
0.76 0.15 0.08
Matches are distributed among these distances:
155 2 0.01
156 3 0.01
157 3 0.01
158 125 0.49
159 117 0.46
160 2 0.01
161 2 0.01
162 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGAGGCGCTCAACC
GGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACTCGATCCCCCCTGCGTGCTGTCGATCCTA
TGCCGCAACCCTCGGTCTGGTCTGAT
Found at i:1324776 original size:159 final size:155
Alignment explanation
Indices: 1324421--1324868 Score: 454
Period size: 159 Copynumber: 2.8 Consensus size: 155
1324411 AACTCTATAT
1324421 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCCGAGCGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-CGAGCGCTCAA
* * * * * ** *
1324486 CCGGTCGGAGAGGCAGAATGCGTAAGCGGGGGATCGGCTTGATCCCCCCTGCGTGCTGTCGATCC
65 CCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCC
* * *
1324551 TATTGTCGCAACCCTCGGTCTGGTCTGA
130 TA-T-CCGCAACCCTCGGTCTCGACTGA
* * * * * *
1324579 TCTTAGAC-TGGGAATGAACTGCGTATGCCTAAGTCAACCCATGAAATGAGCGT-GTAGGCGTTG
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCG-A-GCGCTC
* * *
1324642 AACCGGCCAGAGAGGCATAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTGTGCGTGCTGCCAG
63 AACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTGCC-G
* *
1324707 TCTCGCTA-CCGCAACCCTTGGTC-CGACTGA
126 -ATC-CTATCCGCAACCCTCGGTCTCGACTGA
* * * *
1324737 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCATGCGAGCGCTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGT-CGAGCGCTCA
* * * * * * * *
1324802 GCCGACCAAAGAGGCAGAATGTGCAAGCCAGGGATCGACTCGATCCCCTCTGCGTGCTGTCGATC
64 ACCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATC
1324867 CT
129 CT
1324869 GCTGCCACAA
Statistics
Matches: 235, Mismatches: 44, Indels: 25
0.77 0.14 0.08
Matches are distributed among these distances:
155 2 0.01
156 3 0.01
157 3 0.01
158 107 0.46
159 111 0.47
160 3 0.01
161 3 0.01
162 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTCGAGCGCTCAAC
CGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTGCCGATCCT
ATCCGCAACCCTCGGTCTCGACTGA
Found at i:1325673 original size:26 final size:26
Alignment explanation
Indices: 1325635--1325687 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1325625 GGCTTAAAAT
*
1325635 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1325661 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
1325687 C
1 C
1325688 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1326689 original size:159 final size:155
Alignment explanation
Indices: 1326292--1326746 Score: 409
Period size: 157 Copynumber: 2.9 Consensus size: 155
1326282 CTGTCGATCC
* * * * *
1326292 TGCTGTCGGTCTTGCTACCACAAACCTCGGTCCGACCGGGGCTTACACTTGGAATGAACTCTGTA
1 TGCTGTCGGTCTCGCTACCACAACCCTC-GTCCGACTGGGGCTTAGAC-TGGAATGAACTCCGTA
* * * ** **
1326357 TGCCTAAGCCAACACACGAAATGAGCACGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGTAA
64 TGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAA
** *
1326422 GCCGAGGATCAACCCGGTCTGCCTGCG
129 GCCGAGGATCAACCCGGTCCCCCTACG
* * * * * ***
1326449 TGCTGTCGATC-CTGCTATCGCAACCCTCGATCCG-GTCAGATTTTAGACTGGGAATGAACTCCG
1 TGCTGTCGGTCTC-GCTACCACAACCCTCG-TCCGACT-GGGGCTTAGACT-GGAATGAACTCCG
* * *
1326512 TATGCCTAAGTCAACCCACGAAATGAGCATGTGGGCGCTGAGCC-AGCCAGAGAGGCATAATGCA
62 TATGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAGCCGA-CCAGAGAGGCAGAATGCA
*
1326576 CAAGCC-AGGGATCGACCCGGTCCCCCTCTACG
126 CAAGCCGA-GGATCAACCCGGT-CCCC-CTACG
* * *
1326608 TGCTGCCGGTCTCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTA
1 TGCTGTCGGTCTCGCTACCACAACCCTC-GTCCGACTGGGGCTTAGAC-TGGAATGAACTCCGTA
* * * ** *
1326673 TGCCTAAGCCAACCCACGAAACGGGCATGTGGGTGCTCAGTGGGCC-GAAGAGGCAGAATGCGA-
64 TGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAGCCGACCAG-AGAGGCAGAATGC-AC
*
1326736 AAGCCGGGGAT
127 AAGCCGAGGAT
1326747 TGGCCTGGTC
Statistics
Matches: 234, Mismatches: 48, Indels: 30
0.75 0.15 0.10
Matches are distributed among these distances:
156 4 0.02
157 114 0.49
158 3 0.01
159 108 0.46
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (155 bp):
TGCTGTCGGTCTCGCTACCACAACCCTCGTCCGACTGGGGCTTAGACTGGAATGAACTCCGTATG
CCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAGCCGACCAGAGAGGCAGAATGCACAAGC
CGAGGATCAACCCGGTCCCCCTACG
Found at i:1326784 original size:159 final size:157
Alignment explanation
Indices: 1326292--1326782 Score: 463
Period size: 159 Copynumber: 3.1 Consensus size: 157
1326282 CTGTCGATCC
* * * * * *
1326292 TGCTGTCGGTCTTGCTACCACAAACCTCGGTCCGACCGGGGCTTACACTTGGAATGAACTCTGTA
1 TGCTGTCGATCCTGCTACCACAACCCTC-GTCCGACTGGGGCTTAGAC-TGGAATGAACTCCGTA
* * * * * * *
1326357 TGCCTAAGCCAACACACGAAATGAGCACGCGGGCGCTCAGCCGACTGGAGAGGCAGAATGCGTAA
64 TGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGAAA
* * **
1326422 GCCGAGGATCAACCCGGT--CTGCCTGCG
129 GCCGGGGATCGACCCGGTCCCCCCCTGCG
* * * * ***
1326449 TGCTGTCGATCCTGCTATCGCAACCCTCGATCCG-GTCAGATTTTAGACTGGGAATGAACTCCGT
1 TGCTGTCGATCCTGCTACCACAACCCTCG-TCCGACT-GGGGCTTAGACT-GGAATGAACTCCGT
* * * *
1326513 ATGCCTAAGTCAACCCACGAAATGAGCATGTGGGCGCTGAGCCAGCC-AGAGAGGCATAATGC-A
63 ATGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAGCCGGCCGA-AGAGGCAGAATGCGA
* * *
1326576 CAAGCCAGGGATCGACCCGGTCCCCCTCTACG
127 -AAGCCGGGGATCGACCCGGTCCCCCCCTGCG
* * * *
1326608 TGCTGCCGGT-CTCGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCT
1 TGCTGTCGATCCT-GCTACCACAACCCTC-GTCCGACTGGGGCTTAGAC-TGGAATGAACTCCGT
* * * **
1326672 ATGCCTAAGCCAACCCACGAAACGGGCATGTGGGTGCTCAGTGGGCCGAAGAGGCAGAATGCGAA
63 ATGCCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGAA
* * *
1326737 AGCCGGGGATTGGCCTGGTCCCCCCCTGCG
128 AGCCGGGGATCGACCCGGTCCCCCCCTGCG
1326767 TGCTGTCGATCCTGCT
1 TGCTGTCGATCCTGCT
1326783 GCTGGTCCTA
Statistics
Matches: 261, Mismatches: 59, Indels: 26
0.75 0.17 0.08
Matches are distributed among these distances:
156 2 0.01
157 114 0.44
158 2 0.01
159 136 0.52
160 7 0.03
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.19
Consensus pattern (157 bp):
TGCTGTCGATCCTGCTACCACAACCCTCGTCCGACTGGGGCTTAGACTGGAATGAACTCCGTATG
CCTAAGCCAACCCACGAAATGAGCATGTGGGCGCTCAGCCGGCCGAAGAGGCAGAATGCGAAAGC
CGGGGATCGACCCGGTCCCCCCCTGCG
Found at i:1327273 original size:159 final size:158
Alignment explanation
Indices: 1326846--1327347 Score: 424
Period size: 158 Copynumber: 3.2 Consensus size: 158
1326836 ACTCCATATA
* * *
1326846 CTTAGACATGGAATGAACT-CGATATGCCTAAGCCATCCCACGAAACGAGCGTGTGGGCACTCAA
1 CTTAGACATGGAATGAACTCCG-TATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * ** * *
1326910 CCGATCAGAGAGGCAGAATGTACAAGCCGGGGACCAGCTCGATCCCCC-CTGCGTGCTATTGGTC
65 CAG-TCGGAGAGGCAGAATGTACAAGCCGGGGATCAGCCCGATCCCCCTCTGCACGCTATCGATC
* ** * * * *
1326974 CTGCTGCCGTAACCCTCGGTTCGATTCGAT
129 CCGCTGCCACAACCCTCAGTCCGATGCGAG
* * * * * * * *
1327004 CTTAGA-GTGGGAATGAACTCCATATGCCTAGGTCAACCCACAAAATGAGCGTGCGAGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * * * *
1327068 CCGGGCGGAGAGGCATAATGCACAAGCCGGGGATCGGCCTGGTCCCCCTCTGCACGTTGTCGATC
65 -CAGTCGGAGAGGCAGAATGTACAAGCCGGGGATCAGCCCGATCCCCCTCTGCACGCTATCGATC
*
1327133 CCGCTGCCACAACCCTCAGTCCGGCTGCG-G
129 CCGCTGCCACAACCCTCAGTCC-GATGCGAG
* *
1327163 CTTAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGGGCGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
* * * ** **
1327228 TAGTCGGAGAGGTAGAATGTGCAAGCCGGGGATCAACCCGATCCCCCT-TGCGTGCTGCCGATCC
66 -AGTCGGAGAGGCAGAATGTACAAGCCGGGGATCAGCCCGATCCCCCTCTGCACGCTATCGATCC
** * * *
1327292 TACTGCCGCAACCCTCGGTCCGAT-CTGAT
130 CGCTGCCACAACCCTCAGTCCGATGC-GAG
*
1327321 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
1327348 TTAGATTGGG
Statistics
Matches: 268, Mismatches: 66, Indels: 20
0.76 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 5 0.02
158 138 0.51
159 119 0.44
160 5 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAGC
AGTCGGAGAGGCAGAATGTACAAGCCGGGGATCAGCCCGATCCCCCTCTGCACGCTATCGATCCC
GCTGCCACAACCCTCAGTCCGATGCGAG
Found at i:1327350 original size:26 final size:26
Alignment explanation
Indices: 1327321--1327373 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1327311 CCGATCTGAT
*
1327321 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1327347 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1327373 C
1 C
1327374 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1328411 original size:26 final size:26
Alignment explanation
Indices: 1328375--1328427 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1328365 TCAATTAGAT
1328375 CTTAGACT-GGGACTGAACTCCGTATG
1 CTTAGACTGGGGA-TGAACTCCGTATG
1328401 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
1328427 C
1 C
1328428 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:1328601 original size:26 final size:26
Alignment explanation
Indices: 1328572--1328627 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
1328562 TTGATCCGAT
1328572 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
* *
1328598 CTTAGACATTGAATGCACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
1328624 CTTA
1 CTTA
1328628 AGCCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:1328928 original size:159 final size:158
Alignment explanation
Indices: 1328756--1329063 Score: 363
Period size: 159 Copynumber: 1.9 Consensus size: 158
1328746 CCGGTCTGAT
* * * **
1328756 CTTAGACAGGGAATGAACGCCGTATGCATAAGTC-AACCCATGAAACGAGCGTTCGAGCACTGAG
1 CTTAGACAGGGAATGAACGCCCTATGCATAAG-CAAACCCATCAAACGAGCGTGCGAGCACACAG
* *
1328820 CCGATCGGAGAGGCATAATGCGCAAGCC-AGGGATC-AGCCCGAT-CCCCCTCCACGTGCTGTCG
65 CCGACCGGAGAGGCAGAATGCGCAAGCCGA-GGATCGA-CCCGATCCCCCCTCCA--TGCTGTCG
1328882 ATCCCGCTGCCACAACCCTCGGTCCGACTAGGG
126 ATCCCGCTGCCACAACCCTCGGTCCGACTAGGG
* * * * * *
1328915 CTTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCCATCAAACGAGCGTGCGGGCGCACAGT
1 CTTAGACAGGGAATGAACGCCCTATGCATAAGCAAACCCATCAAACGAGCGTGCGAGCACACAGC
* * * * *
1328980 CGACCGGAGAGGCAGAATGCGTAAGCCGAGGATCGACTCGGTCCCCCCTGCATGCTGTCGATCCT
66 CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTCCATGCTGTCGATCCC
**
1329045 GCTGCCGTAACCCTCGGTC
131 GCTGCCACAACCCTCGGTC
1329064 TGGTCCAATC
Statistics
Matches: 125, Mismatches: 20, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
158 30 0.24
159 85 0.68
160 10 0.08
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.17
Consensus pattern (158 bp):
CTTAGACAGGGAATGAACGCCCTATGCATAAGCAAACCCATCAAACGAGCGTGCGAGCACACAGC
CGACCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTCCATGCTGTCGATCCC
GCTGCCACAACCCTCGGTCCGACTAGGG
Found at i:1329836 original size:26 final size:26
Alignment explanation
Indices: 1329798--1329850 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1329788 GGCTCACACT
1329798 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1329824 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
1329850 C
1 C
1329851 CTAAGCGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1330174 original size:26 final size:26
Alignment explanation
Indices: 1330138--1330190 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1330128 CTAGTTCGAT
1330138 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
1330164 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
1330190 C
1 C
1330191 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:1330666 original size:26 final size:26
Alignment explanation
Indices: 1330637--1330689 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1330627 CCGATCCGAT
*
1330637 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATAAACTCCGTATG
*
1330663 CTTAGACTAGGGATAAACTTCGTATG
1 CTTAGACTAGGGATAAACTCCGTATG
1330689 C
1 C
1330690 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATAAACTCCGTATG
Found at i:1332422 original size:26 final size:26
Alignment explanation
Indices: 1332385--1332437 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1332375 GTTGACTTAG
*
1332385 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
*
1332411 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1332437 G
1 G
1332438 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1332702 original size:158 final size:160
Alignment explanation
Indices: 1332540--1332913 Score: 409
Period size: 158 Copynumber: 2.4 Consensus size: 160
1332530 GACTGAGCAA
* * * *
1332540 CCGCACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CC
1 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACTAGACC
* * * * * * * *
1332604 GGACCGAGGGTTGTGGCAGC-GAGACCGATAGCACGTAGAGGG-GGACCGGGCCTATCCTTGGCT
66 GGACCGAAGGTTGCGACAGCAG-GACCGACAGCACGCAG-GGGTGGACCAGGCCGATCCTTAGCT
**
1332667 T-CGCATTATGCCTCTCCGATCGGCTCAGTGC
129 TACGCATTATGCCTCTCCGATCGGCTCAACGC
* * * * *
1332698 CCGCATGCTCATTTGGTGGGTTGACTTAGGCATACGAAGTTCATTCCA-GTCTAAG-ATTGGACC
1 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACTAGACC
* * **
1332761 GGATCGAAGGTTGCGACAGCAGGATCGACAGCACGCAGGGGTGGACCAGTTCGATCCTTAGCTTA
66 GGACCGAAGGTTGCGACAGCAGGACCGACAGCACGCAGGGGTGGACCAGGCCGATCCTTAGCTTA
* * * * *
1332826 CGTATTCTGCCTCTCCGGTCGGTTGAACGC
131 CGCATTATGCCTCTCCGATCGGCTCAACGC
* * *
1332856 CCCCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTAAGCA
1 CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCA
1332914 TATGGAGTTT
Statistics
Matches: 176, Mismatches: 34, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
156 5 0.03
157 55 0.31
158 108 0.61
159 7 0.04
160 1 0.01
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (160 bp):
CCGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCACTAGACC
GGACCGAAGGTTGCGACAGCAGGACCGACAGCACGCAGGGGTGGACCAGGCCGATCCTTAGCTTA
CGCATTATGCCTCTCCGATCGGCTCAACGC
Found at i:1333112 original size:197 final size:196
Alignment explanation
Indices: 1332777--1333352 Score: 672
Period size: 197 Copynumber: 2.9 Consensus size: 196
1332767 AAGGTTGCGA
* * * ** * ** * *
1332777 CAGCAGGATCGACAGCACGCAGGGGTGGACCAGTTCGATCCTTAGCTTACGTATTCTGCCTCTCC
1 CAGCAGGATCGGCAGCACACAGGGG-GGATCAGGCCAATCCCCAGCTTACGCATTCTACCTCTCC
** ** * *
1332842 GGTCGGTTGAACGCCCCCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGT
65 GACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGT
* * *
1332907 CTAAGCATATGGAGTTTATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGTAGCAACAGGACT
130 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAACAGGACT
1332972 AG
195 AG
* * *
1332974 CAGCAGGATCGGTAGCATACAGAGGGGGATCAGGCCAATCCCCAGCTTGCGCATTCTACCTCTCC
1 CAGCAGGATCGGCAGCACACAG-GGGGGATCAGGCCAATCCCCAGCTTACGCATTCTACCTCTCC
*
1333039 -AGCCGACTGAGCGCCCGCACGCTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATG
65 GA-CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATG
* * *
1333103 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-TCGAGGGTTGCAGTAGCAGGA
129 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCAGCAACAGGA
1333167 CTAG
193 CTAG
* * * * * *
1333171 CAGCAGGATCGGCAGCACGCAGGGGGGATCGGGCCGATCCCCAGCTTACGCATTTTGCCTCTTCG
1 CAGCAGGATCGGCAGCACACAGGGGGGATCAGGCCAATCCCCAGCTTACGCATTCTACCTCTCCG
* * ** * * * * * *
1333236 ACTGGCTGAGCGTACGTACACTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATCCCCA-GT
66 ACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCAT-TCCATGT
* * * *
1333300 CTAAGCATACGGAGTGCATTACCAGTCTAAGATCAGATCGGACCGAGGGTTGC
130 CTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGC
1333353 GACAGCAGGA
Statistics
Matches: 322, Mismatches: 51, Indels: 13
0.83 0.13 0.03
Matches are distributed among these distances:
196 132 0.41
197 187 0.58
198 3 0.01
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (196 bp):
CAGCAGGATCGGCAGCACACAGGGGGGATCAGGCCAATCCCCAGCTTACGCATTCTACCTCTCCG
ACCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTC
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCAGCAACAGGACTA
G
Found at i:1333119 original size:26 final size:26
Alignment explanation
Indices: 1333083--1333134 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1333073 TTGGCTTAGC
1333083 CATACGAAGTTCATT-CCATGTCTAAG
1 CATACGAAGTTCATTCCCA-GTCTAAG
*
1333109 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
1333135 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:1333324 original size:26 final size:26
Alignment explanation
Indices: 1333279--1333330 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1333269 TTGACTTAGA
* *
1333279 CATACGGAGTTCATCCCCAGTCTAAG
1 CATACGGAGTGCATCACCAGTCTAAG
*
1333305 CATACGGAGTGCATTACCAGTCTAAG
1 CATACGGAGTGCATCACCAGTCTAAG
1333331 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (26 bp):
CATACGGAGTGCATCACCAGTCTAAG
Found at i:1333362 original size:196 final size:196
Alignment explanation
Indices: 1332863--1333362 Score: 657
Period size: 196 Copynumber: 2.5 Consensus size: 196
1332853 CGCCCCCACG
* *
1332863 CTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTAAGCATATGGAGTTTATTC
1 CTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * * * *
1332928 CCAGTCTAAGATCAGACCGGACTGAGGGTTGTAGCAACAGGACTAGCAGCAGGATCGGTAGCATA
66 CCAGTCTAAGATCAGA-CGGACCGAGGGTTGCAGCAGCAGGACTAGCAGCAGGATCGGCAGCACA
* *
1332993 CAGAGGGGGATCAGGCCAATCCCCAGCTTGCGCATTCTACCTCTCCAGCCGACTGAGCGCCCGCA
130 CAGAGGGGGATCAGGCCAATCCCCAGCTTACGCATTCTACCTCTCCAGCCGACTGAGCGCACGCA
*
1333058 CG
195 CA
*
1333060 CTCATTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
* * *
1333125 CCAGTCTAAGATCAGACTGGATCGAGGGTTGCAGTAGCAGGACTAGCAGCAGGATCGGCAGCACG
66 CCAGTCTAAGATCAGAC-GGACCGAGGGTTGCAGCAGCAGGACTAGCAGCAGGATCGGCAGCACA
* * * * * * * * *
1333190 CAG-GGGGGATCGGGCCGATCCCCAGCTTACGCATTTTGCCTCTTC-GACTGGCTGAGCGTACGT
130 CAGAGGGGGATCAGGCCAATCCCCAGCTTACGCATTCTACCTCTCCAG-CCGACTGAGCGCACGC
1333253 ACA
194 ACA
* * * * *
1333256 CTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATCCCCA-GTCTAAGCATACGGAGTGCATT
1 CTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCAT-TCCATGTCTAAGCATACGGAGTTCATT
*
1333320 ACCAGTCTAAGATCAGATCGGACCGAGGGTTGC-GACAGCAGGA
65 CCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCAG-CAGCAGGA
1333363 TTGACAGCAC
Statistics
Matches: 266, Mismatches: 32, Indels: 11
0.86 0.10 0.04
Matches are distributed among these distances:
195 2 0.01
196 140 0.53
197 124 0.47
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (196 bp):
CTCGTTTCGTGGGTTGGCTTAGCCATACGAAGTTCATTCCATGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACGGACCGAGGGTTGCAGCAGCAGGACTAGCAGCAGGATCGGCAGCACAC
AGAGGGGGATCAGGCCAATCCCCAGCTTACGCATTCTACCTCTCCAGCCGACTGAGCGCACGCAC
A
Found at i:1333837 original size:158 final size:158
Alignment explanation
Indices: 1333388--1333837 Score: 446
Period size: 158 Copynumber: 2.8 Consensus size: 158
1333378 TGGGACCAGG
* * * * * *
1333388 CCGAT-CCCTGGCTTGCGCATTCTGCCTCTCCGGCAGGTTGAGTGCCCGCACACCCGTTTCATGG
1 CCGATCCCCT-GCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCATTTCGTGG
** *
1333452 GTTGGCTTAGGCATTGGGAGTTCATTCCATGTCTAAGCCCCAACCGGAAC-GAGGTTGTGGTAGC
65 GTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACC-GAACTGAGGTTGTGGTAGC
* ** ** *
1333516 GGGGCCGGCAGCACGCAAAAGGGGACCGAG
129 AGGATCAACAGCACGCAAAAGGGGACCGAA
* * * * * * * * *
1333546 TCGATCCCCGGCTTGGGGATTATGCCTCTTCGGCTGGCTCAGCGCCTGCACGCTCATTTCGTGGG
1 CCGATCCCCTGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCATTTCGTGGG
* * * ** * *
1333611 TTGACTTATGCGTAC-AGAGTTCATTCCCA-GTCTAAG-ATCAGACCGAACTGAAGGTTGCGGCA
66 TTGGCTTAGGCATACGA-AGTTCATT-CCATGTCTAAGCCCCA-ACCGAACTG-AGGTTGTGGTA
* * **
1333673 GTAGGATCAACAGCACG-TAGGGGGGACCGAA
127 GCAGGATCAACAGCACGCAAAAGGGGACCGAA
* *
1333704 CCGATCCCCTGCTTGCGCATTCTGCCTCTCCGGCCGACTGAGCGCCCGCACGCTCATTTCGTGGG
1 CCGATCCCCTGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCATTTCGTGGG
1333769 TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACC-AGACTGAGGGTTGTGGTAGC
66 TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGA-ACTGA-GGTTGTGGTAGC
1333833 AGGAT
129 AGGAT
1333838 TGGCAGCGGG
Statistics
Matches: 228, Mismatches: 53, Indels: 22
0.75 0.17 0.07
Matches are distributed among these distances:
157 11 0.05
158 188 0.82
159 29 0.13
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.23
Consensus pattern (158 bp):
CCGATCCCCTGCTTGCGCATTCTGCCTCTCCGGCAGGCTGAGCGCCCGCACGCTCATTTCGTGGG
TTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCCCCAACCGAACTGAGGTTGTGGTAGCAG
GATCAACAGCACGCAAAAGGGGACCGAA
Found at i:1333979 original size:26 final size:26
Alignment explanation
Indices: 1333949--1334001 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1333939 GTAGACTTAG
*
1333949 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
1333975 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1334001 G
1 G
1334002 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1334332 original size:159 final size:158
Alignment explanation
Indices: 1333975--1334339 Score: 371
Period size: 159 Copynumber: 2.3 Consensus size: 158
1333965 CCCAGTCTAA
* * **
1333975 GCATACAGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGACCGACA
* * * * * * * * *
1334040 GCACACAGGGGGGATCGGGCCGATCCTAGGCTTGTGCATTCTGCCTCTCTGGCCGGCTGAGTGCC
66 GCACACAAGGGGGACCGGACCGATCCTAGACTTGCGCATTATGCCTCTCTGACCAGCTGAGTGCA
*
1334105 CGCACGCCCGTTTCATGGGTTGGCTTAG
131 CGCACGCCCGTTTCATGGGTTGACTTAG
* * ** * ** *
1334133 GCATAGGGAGTTCATT-CCATGTCTAAG-CCCCAGCTGGACCGAGGGTTGTGGTAGTGGGACCGG
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCGGA-CCGGACCGAGGGTTGTGGTAGCAGGACCGA
* *
1334196 CAGCACGTA-AAGGGGGACCGGACTGATCCTCGACTTGCGCATTATGCCTCT-TCGACCAG-TGC
64 CAGCAC--ACAAGGGGGACCGGACCGATCCTAGACTTGCGCATTATGCCTCTCT-GACCAGCTG-
** * *
1334258 AGTGCACGCACGCTTGTTTCATGGGTTGATTTAT
125 AGTGCACGCACGCCCGTTTCATGGGTTGACTTAG
* *
1334292 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
1334340 CTGCCGTAGG
Statistics
Matches: 164, Mismatches: 35, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
157 4 0.02
158 54 0.33
159 101 0.62
160 5 0.03
ACGTcount: A:0.19, C:0.25, G:0.32, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGACCGACA
GCACACAAGGGGGACCGGACCGATCCTAGACTTGCGCATTATGCCTCTCTGACCAGCTGAGTGCA
CGCACGCCCGTTTCATGGGTTGACTTAG
Found at i:1335213 original size:26 final size:26
Alignment explanation
Indices: 1335177--1335226 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1335167 GACTTAGGCG
1335177 TATGGAGTTCATCCCCAGTCTAAGCA
1 TATGGAGTTCATCCCCAGTCTAAGCA
*
1335203 TATGGAGTTCATTCCCAGTCTAAG
1 TATGGAGTTCATCCCCAGTCTAAG
1335227 ATTAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TATGGAGTTCATCCCCAGTCTAAGCA
Found at i:1336201 original size:26 final size:26
Alignment explanation
Indices: 1336165--1336215 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1336155 TTGACTTAGG
*
1336165 CATACGGAGTTCATCCCCAGTCTAAA
1 CATACAGAGTTCATCCCCAGTCTAAA
*
1336191 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATCCCCAGTCTAA
1336216 GATCAGACTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.25
Consensus pattern (26 bp):
CATACAGAGTTCATCCCCAGTCTAAA
Found at i:1336498 original size:159 final size:160
Alignment explanation
Indices: 1336191--1336693 Score: 434
Period size: 159 Copynumber: 3.2 Consensus size: 160
1336181 CCAGTCTAAA
* * * * * * * *
1336191 CATACAGAGTTCATTCCCA-GTCTAAG-ATCAGACTAGACCGAGGGTTGCAGCAGTAGGATCAGC
1 CATACGGAGTTCATT-CCATATCTAAGCACCAGACCAGACAGAGGGTTGCAGCAGCAGGACCAAC
* * * * * * * * *
1336254 AGCACGCAAGGGGGA-CCGAGCTGATCCCCGGCTTGCGCATTCTGCCTCTCCGATTGGTTGAGCG
65 AACACGCAGGGGGGATCCAAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCA
* * *
1336318 CCCGCATGCCCATTTCATGGGTTGGCTTAGG
130 CCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* * * * **
1336349 CATAGGGAGTTCATTCCATTTCTAAGCCCCAG-CCAGATAGAGGGTTGTGGCAGC-GAGACCAAC
1 CATACGGAGTTCATTCCATATCTAAGCACCAGACCAGACAGAGGGTTGCAGCAGCAG-GACCAAC
* * * * * *
1336412 AACACGCAGAGGGGGAT-CAGGTCGATCCCTGGCTTGCGCATTATGCCTCTTCGGTCGGGTCAGC
65 AACACGCAG-GGGGGATCCAAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGC
* * *
1336476 ACCCGCACGCTCGTTTCGTGGGTTGACTTATG
129 ACCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* *** * * * *
1336508 CATATGGAGTTCATTCCCA-ATCTAAG-ATTGGATCAGACCGAGGGTTGCAGCAGCAGGATCGAC
1 CATACGGAGTTCATT-CCATATCTAAGCACCAGACCAGACAGAGGGTTGCAGCAGCAGGACCAAC
* * *
1336571 AGCACGTAGGGGGGGTCCAAGCCGAT-CCTCGGCTTGCGCATTCTGCCTCTCCGG-CTGGCTGAG
65 AACACGCAGGGGGGATCCAAGCCGATCCCT-GGCTTGCGCATTCTGCCTCTCCGGTC-GGCTGAG
*
1336634 CACCCGCACGCTCTTTTCGTGGGTTGGCTTAGG
128 CACCCGCACGCTCATTTCGTGGGTTGGCTTAGG
* *
1336667 CGTACGG-GTTCATTCCATGTCTAAGCA
1 CATACGGAGTTCATTCCATATCTAAGCA
1336694 TACGGAGTTC
Statistics
Matches: 271, Mismatches: 61, Indels: 25
0.76 0.17 0.07
Matches are distributed among these distances:
157 7 0.03
158 71 0.26
159 189 0.70
160 4 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (160 bp):
CATACGGAGTTCATTCCATATCTAAGCACCAGACCAGACAGAGGGTTGCAGCAGCAGGACCAACA
ACACGCAGGGGGGATCCAAGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCAC
CCGCACGCTCATTTCGTGGGTTGGCTTAGG
Found at i:1336704 original size:26 final size:25
Alignment explanation
Indices: 1336669--1336717 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 25
1336659 GGCTTAGGCG
1336669 TACGGGTTCATT-CCATGTCTAAGCA
1 TACGGGTTCATTCCCA-GTCTAAGCA
1336694 TACGGAGTTCATTCCCAGTCTAAG
1 TACGG-GTTCATTCCCAGTCTAAG
1336718 ATTTTGATCC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 5 0.23
26 14 0.64
27 3 0.14
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (25 bp):
TACGGGTTCATTCCCAGTCTAAGCA
Found at i:1337919 original size:26 final size:25
Alignment explanation
Indices: 1337889--1337939 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
1337879 GTTGGCTTAG
1337889 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGAAGTTCATT-CAAGTCTAA
* *
1337915 GCATACGGAGTTCATTCTAGTCTAA
1 GCATACGAAGTTCATTCAAGTCTAA
1337940 CATTTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 8 0.35
26 15 0.65
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATACGAAGTTCATTCAAGTCTAA
Found at i:1338662 original size:26 final size:26
Alignment explanation
Indices: 1338611--1338663 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1338601 GTTGACTTAG
*
1338611 GCATACGGAGTTCATCCCATGTCTAA
1 GCATACGGAGTTCATCCCATGCCTAA
1338637 GCATACGGAGTTCATTCCCA-GCCTAA
1 GCATACGGAGTTCA-TCCCATGCCTAA
1338663 G
1 G
1338664 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCATGCCTAA
Found at i:1338944 original size:159 final size:157
Alignment explanation
Indices: 1338671--1339299 Score: 532
Period size: 159 Copynumber: 4.0 Consensus size: 157
1338661 AAGATCGGAT
* * * * * * *
1338671 CGGACCGAGGGTTGCGGCAGCAGGATTGACGGCATGCAGGGGGTATCGGG-CAGATCCTCGGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCA-ATCCTCAGCTT
* * * * ** *
1338735 GCGCATTCTGTCTCTCCAACCGGCTGAGTGCCCGAACGCCCGTTTCGTGGGTTGGCTTAGGCATA
65 GCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGAACGCTCGTTTTATGGGTTGACTTAGGCATA
*
1338800 GGGAGTTCATTCCATGTCTAAGCCCTAGC
130 GAGAGTTCATTCCATGTCTAAGCCC-AGC
* * * * *
1338829 CGGACCGAGGGTTGTGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCGGGCCAATCCTCGGCCT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAG-GGGGGACCGGGTCAATCCTCAGCTT
* ** * *
1338894 ACGCATTATGCCTCTCCGGTCGGCCT-AGTGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCAT
65 GCGCATTATGCCTCTCCGACCGG-CTGAGTGCCCGAACGCTCGTTTTATGGGTTGACTTAGGCAT
*
1338958 AG-GAAGTTCATTCCATGTCTAAGCCCAAGT
129 AGAG-AGTTCATTCCATGTCTAAGCCC-AGC
* * * * * *
1338988 CGGATCGACGGTTGTGACAGC-GGAACTGACAGCACGCAGAGGGGGACCAGGTCGATCC-CAAGC
1 CGGACCGAGGGTTGTGGCAGCAGGATC-GACAGCACGCAG-GGGGGACCGGGTCAATCCTC-AGC
* * * * * * * *
1339051 TTGTGCATTATGCCTCCCCGATCGGCTCAATGCCTGAACGCTTGTTTTATGGGTTAACTTAGGCA
63 TTGCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGAACGCTCGTTTTATGGGTTGACTTAGGCA
* ** *
1339116 TACAGAGTTCATTCC-TCGTCTAAGATCGGAC
128 TAGAGAGTTCATTCCAT-GTCTAAGCCCAG-C
* * * * * * * * *
1339147 CAGACCGAGGGATGAGGTAGCAGGATCGATAGCACACAGGGGCGGATCGGGTCGATCCCCAGCTT
1 CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGG-GGACCGGGTCAATCCTCAGCTT
* * * * * * * * * *
1339212 GTGCATTCTACCTCTCCGGCCAGCTGAGGGCTCGCACGCTCGTTTTATGGGTTGGCCTAGGCATA
65 GCGCATTATGCCTCTCCGACCGGCTGAGTGCCCGAACGCTCGTTTTATGGGTTGACTTAGGCATA
*
1339277 TAGAGTTCATTCCATGTCTAAGC
130 GAGAGTTCATTCCATGTCTAAGC
1339300 ATACAGAGTT
Statistics
Matches: 380, Mismatches: 77, Indels: 27
0.79 0.16 0.06
Matches are distributed among these distances:
158 45 0.12
159 324 0.85
160 11 0.03
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23
Consensus pattern (157 bp):
CGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCAATCCTCAGCTTG
CGCATTATGCCTCTCCGACCGGCTGAGTGCCCGAACGCTCGTTTTATGGGTTGACTTAGGCATAG
AGAGTTCATTCCATGTCTAAGCCCAGC
Found at i:1339308 original size:26 final size:26
Alignment explanation
Indices: 1339272--1339324 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1339262 GTTGGCCTAG
*
1339272 GCATATAGAGTTCATTCC-ATGTCTAA
1 GCATACAGAGTTCATTCCTA-GTCTAA
1339298 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
1339324 G
1 G
1339325 ATCAAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:1339520 original size:26 final size:26
Alignment explanation
Indices: 1339484--1339533 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
1339474 TGACGTAGGC
1339484 ATACGGAGTTC-TTCCCTAGTCTAAAT
1 ATACGGAGTTCATTCCC-AGTCTAAAT
1339510 ATACGGAGTTCATTCCCAGTCTAA
1 ATACGGAGTTCATTCCCAGTCTAA
1339534 GATCGAACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAAT
Found at i:1341241 original size:171 final size:169
Alignment explanation
Indices: 1340976--1341312 Score: 413
Period size: 171 Copynumber: 2.0 Consensus size: 169
1340966 CAGGATCGAC
* * * **
1340976 AGCACGTAGAGGGGATCGAGCCAATCCCCGGCTTGTGCATTCTACCTCTTCGGTCAGTTTTGCGC
1 AGCACGCAGAGGGGATCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTTCGGTCAGCTGAGCGC
* * * * **
1341041 CTGCACGCTCATTTCATGGGTTGGCTTAGGCGTATAGAGTTCATTTCATGTCTAAGCCTTAGTCA
66 CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGA-TTCATTCCATGTCTAAGCCCCAGTCA
* *
1341106 GACCGAGGGTTGTGGCAGTAGGACCGGAAGTGAGATCGGT
130 GACCGAGGGTTCTGACAGTAGGACCGGAAGTGAGATCGGT
** * * * *
1341146 AGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTTTGCCTCTTTGGTCGGCTGAGCG
1 AGCACGCAGA-GGGGATCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTTCGGTCAGCTGAGCG
* * * * **
1341211 CCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGATTCATTCCATGTCTAAGCCCCAGTTG
65 CCCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGATTCATTCCATGTCTAAGCCCCAGTCA
* *
1341276 GACCGAGGGTTCTGACAGTAGGACCGGCAGTGGGATC
130 GACCGAGGGTTCTGACAGTAGGACCGGAAGTGAGATC
1341313 AACAGTACGT
Statistics
Matches: 139, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
170 63 0.45
171 76 0.55
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.26
Consensus pattern (169 bp):
AGCACGCAGAGGGGATCGAGCCAATCCCCGGCTTGCGCATTCTACCTCTTCGGTCAGCTGAGCGC
CCGCACGCTCATTTCATGGGTTGGCTTAGGCATACAGATTCATTCCATGTCTAAGCCCCAGTCAG
ACCGAGGGTTCTGACAGTAGGACCGGAAGTGAGATCGGT
Found at i:1341298 original size:170 final size:169
Alignment explanation
Indices: 1340801--1341326 Score: 500
Period size: 170 Copynumber: 3.1 Consensus size: 169
1340791 GTAGTGGGAC
* * ** *
1340801 CGACAGCACGCAGAAGGGGATCGGGCTAATCCCCGGCTTATGCATTATGCCTCTTCGACCGGGTC
1 CGACAGCACGCAG-AGGGGATCGAGCTAATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTC
* * * * * **
1340866 AGTGCCCACACACTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGATC
65 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCC
* * * * **
1340930 AAATTAGACCGAGGGTTGC-GGTAGCAGGACCAGCAACAGGAT
129 AAGTTAGACCGAGGGTT-CTGGCAGTAGGACC-GGAAGTGGAT
* * * * * * **
1340972 CGACAGCACGTAGAGGGGATCGAGCCAATCCCCGGCTTGTGCATTCTACCTCTTCGGTCAGTTTT
1 CGACAGCACGCAGAGGGGATCGAGCTAATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTCA
* * * * ** * **
1341037 GCGCCTGCACGCTCATTTCATGGGTTGGCTTAGGCGTATAGAGTTCATTTCATGTCTAAGCCTTA
66 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAA
* *
1341102 GTCAGACCGAGGGTTGTGGCAGTAGGACCGGAAGTGAGAT
131 GTTAGACCGAGGGTTCTGGCAGTAGGACCGGAAGTG-GAT
** * * * * *
1341142 CGGTAGCACGCAGAGGGGGATCGAGCTGATCCCCGGCTTGCGCATTTTGCCTCTTTGGTCGGCTG
1 CGACAGCACGCAGA-GGGGATCGAGCTAATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTC
* *
1341207 AGCGCCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGA-TTCATTCCATGTCTAAGCCCC
65 AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCA
* * *
1341271 AGTTGGACCGAGGGTTCTGACAGTAGGACCGGCAGTGGGAT
130 AGTTAGACCGAGGGTTCTGGCAGTAGGACCGGAAGT-GGAT
* * *
1341312 CAACAGTACGTAGAG
1 CGACAGCACGCAGAG
1341327 AAAGATCGGG
Statistics
Matches: 281, Mismatches: 69, Indels: 12
0.78 0.19 0.03
Matches are distributed among these distances:
169 7 0.02
170 185 0.66
171 89 0.32
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (169 bp):
CGACAGCACGCAGAGGGGATCGAGCTAATCCCCGGCTTGTGCATTATGCCTCTTCGGTCGGCTCA
GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAA
GTTAGACCGAGGGTTCTGGCAGTAGGACCGGAAGTGGAT
Found at i:1341820 original size:26 final size:26
Alignment explanation
Indices: 1341791--1341843 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1341781 GTTGACTTAG
*
1341791 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1341817 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1341843 G
1 G
1341844 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1342322 original size:25 final size:26
Alignment explanation
Indices: 1342287--1342338 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
1342277 GTTGATTTAG
1342287 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1342313 GCATA-GGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1342338 G
1 G
1342339 ATCGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1342615 original size:159 final size:156
Alignment explanation
Indices: 1342313--1342813 Score: 524
Period size: 158 Copynumber: 3.2 Consensus size: 156
1342303 CCCAGTCTAA
* ** * * *
1342313 GCATA-GGAGTTCATTCCCTGTCTAAGATCGGACCGAACCGAGGGTTACGACAGCAGGATCGACA
1 GCATACGGAGTTCATTCCATGTCTAAGA-CCAACCGGACCGAGGGTTATGACAGCAGGATCGATA
* * *
1342377 GCACGCAGGGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTACCTCTCCGGCCGGCTCAGCGCC
65 GCACGCAAGGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGCGCC
1342442 CGCACGCCTGTTTCATGGGTTGGCTTAG
130 CGCAC-CCTGTTTCATGGGTTGGCTTAG
* * * * * * *
1342470 GCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCGAAGGTTGTGACAACGGGACCGATA
1 GCATACGGAGTTCATTCCATGTCTAAG-ACCAACCGGACCGAGGGTTATGACAGCAGGATCGATA
** * **
1342535 GCACGCAAAGGGGGATCGGGTCTATCCCCGGCTTGCGCATTATGCCTCTCCGACCGGCTCAATGC
65 GCACGC-AAGGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGCGC
* * * * *
1342600 CTGAACTCTAATTTCATGGGTTGACTTAG
129 CCGCACCCT-GTTTCATGGGTTGGCTTAG
* * * *
1342629 GCATACGGAGTTCATTCC-CGTCTAAGATCAGACCGGACCGAGGGTTAT-AGTAGCAGGATTGAT
1 GCATACGGAGTTCATTCCATGTCTAAGACCA-ACCGGACCGAGGGTTATGA-CAGCAGGATCGAT
* * * * * * *
1342692 AGCACG-TAGGATGGGATCGGGCCGGTCCTCGGCTTGCGCATTCTGCCTCTCTGATCGGCTGAGG
64 AGCACGCAAGG--GGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGC
* *
1342756 GCCCGCACGCTCGTTTCATGGGTTGGCTTAA
127 GCCCGCACCCT-GTTTCATGGGTTGGCTTAG
*
1342787 GCATACGGAGTTCATTCCATGCCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
1342814 TATACGGAGT
Statistics
Matches: 279, Mismatches: 56, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
156 3 0.01
157 8 0.03
158 174 0.62
159 94 0.34
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGACCAACCGGACCGAGGGTTATGACAGCAGGATCGATAG
CACGCAAGGGGGATCGGGTCGGTCCCCGGCTTGCGCATTCTGCCTCTCCGACCGGCTCAGCGCCC
GCACCCTGTTTCATGGGTTGGCTTAG
Found at i:1343020 original size:26 final size:26
Alignment explanation
Indices: 1342984--1343036 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1342974 GTTGACTTAG
*
1342984 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
1343010 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1343036 G
1 G
1343037 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1343363 original size:183 final size:184
Alignment explanation
Indices: 1342933--1343378 Score: 535
Period size: 183 Copynumber: 2.4 Consensus size: 184
1342923 TCTCTGGTCA
* *
1342933 GCCTCTCCGACCTGCTGAGCGCCCGCACGCTCGTTTTATGGGTTGACTTAGGCATACGGAGTTCA
1 GCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
1342998 TCCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGAACTGGACCGAGGGTTGCGACA
66 TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACA
* * * * * * *
1343063 GTAGGATCAGTAGCACACAGGGGGGATCAGGTCGATCCTCGGCTTACGCATTAT
131 GCAGGATCAGCAGCACACAGAGGGGATCAGGCCGATCCCCGACTTACACATTAT
* * * * * *
1343117 GCCTCTTCGACCGGCTCAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTATGCATATGGAGTTCA
1 GCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* *
1343182 TCCCCAGTCTAAGCATAC-GAAGTTCATTCCCAGTC-ATGATC-AGACCGGATCGAGGGTTGCGA
66 TCCCCAGTCTAAGCATACAG-AGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGA
* * * *
1343244 CAGCAGGAT-TGACAGCACGCAGAGGGGATC-GAGCCGATCCCCGACTTGCACATTCT
129 CAGCAGGATCAG-CAGCACACAGAGGGGATCAG-GCCGATCCCCGACTTACACATTAT
* * * * * *
1343300 GCCTCTCCGGCCAGCTGAGCACCCGCACACCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCA
1 GCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
*
1343365 T-TCCATGTCTAAGC
66 TCCCCA-GTCTAAGC
1343379 CCCAGTCAGA
Statistics
Matches: 223, Mismatches: 34, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
182 6 0.03
183 127 0.57
184 90 0.40
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (184 bp):
GCCTCTCCGACCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
TCCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGACA
GCAGGATCAGCAGCACACAGAGGGGATCAGGCCGATCCCCGACTTACACATTAT
Found at i:1343556 original size:159 final size:158
Alignment explanation
Indices: 1343194--1344035 Score: 387
Period size: 159 Copynumber: 5.2 Consensus size: 158
1343184 CCCAGTCTAA
* * **
1343194 GCATACGAAGTTCATTCCCAGTC-ATGATCAGACCGGATCGAGGGTTGCGACAGCAGGATTGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGACCGACA
* ** *
1343258 GCACGCAGAGGGGATCGAGCCGATCCCCGACTTGCACATTCTGCCTCTCCGGCCAGCTGAGCACC
66 GCACGCAGAGGGGATCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCAACCAGCTCAGCACC
* *
1343323 CGCACACCCGTTTCATGGGTTGGCTTAG
131 CGCACACCCATTTCATGGGTTGACTTAG
* ** * * * * * * *
1343351 GCATAGGGAGTTCATT-CCATGTCTAAGCCCCAG-TCAGACCGTGGGTTGTGGCAGCGGGACCGA
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGATCGAGGGTTGCGACAGCAGGACCGA
* * ** * ** * * *
1343414 TAGCACGCAGAGGGGGA-CTGGGTTGATCCTCGACTTGTGCATTATGCCTCTTCAATCGGCTCAG
64 CAGCACGCAGA-GGGGATC-GAGCCGATCCCCGACTTGCACATTATGCCTCTCCAACCAGCTCAG
* * * * *
1343478 CACCCGTACGCTCATTTCGTGGGTTGACTTAT
127 CACCCGCACACCCATTTCATGGGTTGACTTAG
*
1343510 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGGCAGTAGGACCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTT---GC-----GA-CAGC-
* * * *** * * *
1343575 GAGGATCGACAGCACGCACG-GGGGACCGAGCCAATCTGTGGCTTGCACATTCTGCCTCTCCGAC
56 -AGGACCGACAGCACGCA-GAGGGGATCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCAAC
* * * * * * * *
1343639 CGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAG
119 CAGCTCAGCACCCGCACACCCATTTCATGGGTTGACTTAG
* * ** * *
1343679 GCATACGGAGTTTAGT-CCATGTCTAAGCCCCAG-TCGG-TCCGAGGGTTGTGGCAGCAAGACCG
1 GCATACGGAGTTCATTCCCA-GTCTAAG-ATCAGACCGGAT-CGAGGGTTG-CG-A-C-AG--C-
* * * * **
1343741 GTAGCGAGATCGACAGCATGCAGAGGGTGATCGGGCCGATCCCCGGCTTGCGTATTATGCCTCTC
56 --A--G-GACCGACAGCACGCAGAGGG-GATCGAGCCGATCCCCGACTTGCACATTATGCCTCTC
* ** * * * * *
1343806 CGACTGGCTCAG-AGCCCGCACGCTCGTTTTATGGGTTGACTTAT
115 CAACCAGCTCAGCA-CCCGCACACCCATTTCATGGGTTGACTTAG
* * * * * * * *
1343850 TCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGG-GCTGAAGGTTGTGACAGCAGGATCGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCAGGACCGAC
* * * * * ** * ** * *
1343914 AGCACCCAGGGGGGATCGGGCCGGT--CCAACTTGTGCATTCTGCCTCTCCGGCCAGCTGAGCGC
65 AGCACGCAGAGGGGATCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCAACCAGCTCAGCAC
* *** * *
1343977 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
130 CCGCACACCCATTTCATGGGTTGACTTAG
1344006 GCATACGGAGTTCATT-CCATGTCTAAGATC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATC
1344036 GGATCGGACT
Statistics
Matches: 519, Mismatches: 126, Indels: 81
0.71 0.17 0.11
Matches are distributed among these distances:
155 3 0.01
156 78 0.15
157 17 0.03
158 48 0.09
159 113 0.22
160 4 0.01
162 3 0.01
163 2 0.00
164 2 0.00
165 1 0.00
166 2 0.00
167 4 0.01
168 9 0.02
169 96 0.18
170 40 0.08
171 94 0.18
172 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCAGGACCGACA
GCACGCAGAGGGGATCGAGCCGATCCCCGACTTGCACATTATGCCTCTCCAACCAGCTCAGCACC
CGCACACCCATTTCATGGGTTGACTTAG
Found at i:1343899 original size:171 final size:169
Alignment explanation
Indices: 1343453--1344134 Score: 506
Period size: 171 Copynumber: 4.1 Consensus size: 169
1343443 TCGACTTGTG
* * * *
1343453 CATTATGCCTCTTC-AATCGGCTCAGCACCCGTACGCTCATTTCGTGGGTTGACTTATGCATACG
1 CATTATGCCTCTCCGACT-GGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACG
* * ** * *
1343517 GAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGGCAGTAGGACCAGCAGAGGATC
65 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAAGACCAGCAGAGGATC
***
1343582 GACAGCACGCACGGGGGACCGAGCCAATCTGTGGCTTGCA
130 GACAGCACGCACGGGGGACCGAGCCAATCCCCGGCTTGCA
* * * * * *
1343622 CATTCTGCCTCTCCGACCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
1 CATTATGCCTCTCCGACTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGG
* * ** * * * * *
1343687 AGTTTAGT-CCATGTCTAAGCCCCAG-TCGGTCCGAGGGTTGTGGCAGCAAGACCGGTAGCGAGA
66 AGTTCATTCCCA-GTCTAAG-ATCAGATCGGACTGAGGGTTGTGGCAGCAAGACCAGCAGAG-GA
* * * * *
1343750 TCGACAGCATGCA-GAGGGTGATCGGGCCGATCCCCGGCTTGCG
128 TCGACAGCACGCACG-GGG-GACCGAGCCAATCCCCGGCTTGCA
* ** * *
1343793 TATTATGCCTCTCCGACTGGCTCAG-AGCCCGCACGCTCGTTTTATGGGTTGACTTATTCATACA
1 CATTATGCCTCTCCGACTGGCTCAGCA-CCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACG
* * *
1343857 GAGTTCATTCCCAGTCTAAGATCGGATCGGGCTGAAGGTTGT--------GA-CAGC--AGGATC
65 GAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAAGACCAGCAGAGGATC
* * * * ** ** **
1343911 GACAGCACCCAGGGGGGATCGGGCCGGT--CCAACTTGTG
130 GACAGCACGCACGGGGGACCGAGCCAATCCCCGGCTTGCA
* * ** * * * * *
1343949 CATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGGCTTAGGCATACGG
1 CATTATGCCTCTCCGACTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGG
* * * * *
1344014 AGTTCATT-CCATGTCTAAGATCGGATCGGACTAAGGGTTATGGCAGTAGGACCAGCAGTAGGAT
66 AGTTCATTCCCA-GTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAAGACCAGCAG-AGGAT
* *
1344078 CGACAGCACGCA-GAGGGGACC-AGGCCGATCCCCAGCTTGCA
129 CGACAGCACGCACG-GGGGACCGA-GCCAATCCCCGGCTTGCA
*
1344119 CATTCTGCCTCTCCGA
1 CATTATGCCTCTCCGA
1344135 TCGATTGAGT
Statistics
Matches: 398, Mismatches: 87, Indels: 55
0.74 0.16 0.10
Matches are distributed among these distances:
155 3 0.01
156 90 0.23
158 11 0.03
159 16 0.04
160 2 0.01
162 2 0.01
163 2 0.01
164 2 0.01
165 4 0.01
167 1 0.00
168 30 0.08
169 91 0.23
170 46 0.12
171 95 0.24
172 3 0.01
ACGTcount: A:0.20, C:0.28, G:0.30, T:0.23
Consensus pattern (169 bp):
CATTATGCCTCTCCGACTGGCTCAGCACCCGCACGCTCGTTTCGTGGGTTGACTTATGCATACGG
AGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTGTGGCAGCAAGACCAGCAGAGGATCG
ACAGCACGCACGGGGGACCGAGCCAATCCCCGGCTTGCA
Found at i:1344224 original size:71 final size:71
Alignment explanation
Indices: 1344104--1344240 Score: 168
Period size: 71 Copynumber: 1.9 Consensus size: 71
1344094 GGACCAGGCC
* * * ** *
1344104 GATCCCCAGCTTGCACATTCTGCCTCTCCGATCGATTGAGTGCCCGCATGCTCATTTCGTGGGTT
1 GATCCCCAGCTTGCACATTATGCCTCTCCGACCGACTGAGCACCCGCATGCTCATTTCATGGGTT
1344169 GGCTTA
66 GGCTTA
* ** *
1344175 GATCCCC-GACTTGCGCATTATGCCTCTCCGACCGACTGAGCACTTGCATGCTCGTTTCATGGGT
1 GATCCCCAG-CTTGCACATTATGCCTCTCCGACCGACTGAGCACCCGCATGCTCATTTCATGGGT
1344239 TG
65 TG
1344241 ACTTTGGCAT
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
70 1 0.02
71 54 0.98
ACGTcount: A:0.15, C:0.31, G:0.24, T:0.30
Consensus pattern (71 bp):
GATCCCCAGCTTGCACATTATGCCTCTCCGACCGACTGAGCACCCGCATGCTCATTTCATGGGTT
GGCTTA
Found at i:1344450 original size:158 final size:154
Alignment explanation
Indices: 1344175--1344747 Score: 528
Period size: 158 Copynumber: 3.6 Consensus size: 154
1344165 GGTTGGCTTA
* ** *
1344175 GATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTGAGCACTTGCATGCTCGTTTCATGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * *
1344240 GACTTTGGCATACGGAGTTCATCCCCAGTCTAAGATCGGACAGAACCGAGGGTTACAGCAGCAGG
66 GACTTAGGCATACGGAGTTCAT-TCCAGTCTAAGATCAGACAG-ACTGAGGGTTA-AGCAGCAGG
* *
1344305 ATCGGCAGTACGCAGGTGGGACCAGGTC
128 ATCGGCAGCACGCAGG-GGGACCAGGCC
*
1344333 GATCCCCTG-CTTGCGCATTCTGCCTCTCCGACCGACTGAGCGCCCGCACGC-CTGTTT-AGTGG
1 GATCCCC-GACTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTC-GTTTCA-TGG
* * ** * ** *
1344395 GTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACTGAGGGTTGTGGCAGT
63 GTTGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG-ATCAGACAGACTGAGGGTT-AAGCAGC
* *
1344460 GGGATCGGTAGCACGCAGAGGGGTACCAGGCC
125 AGGATCGGCAGCACGCAG-GGGG-ACCAGGCC
* * * * * * * * *
1344492 GATCCTCGGCTTGTGCATTATGCCTCTTCGATCGGCTCAACGCCCGCATGCTCGTTTCATGGGTT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTT
* * * *
1344557 GACTTATGCATACGAAGTTCATTCCCAATCTAAGATCAGACCGGA-TCGAGGGTTAAGGCAGCAG
66 GACTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGA-CAGACT-GAGGGTTAA-GCAGCAG
* * *
1344621 GATCGACCGCATGCAGGGGGACC-GAGCC
127 GATCGGCAGCACGCAGGGGGACCAG-GCC
** * * * *
1344649 GATCCCCGACTTGCTTATTTTGCCTCTCCGATC-AGCTGAGCGCCCGCACACTCGTTTCGTGGGT
1 GATCCCCGACTTGCGCATTATGCCTCTCCGACCGA-CTGAGCGCCCGCACGCTCGTTTCATGGGT
* *
1344713 TGGCTTAGGCATACAGAGTTCATTCCATGTCTAAG
65 TGACTTAGGCATACGGAGTTCATTCCA-GTCTAAG
1344748 CATACAGAGT
Statistics
Matches: 332, Mismatches: 65, Indels: 37
0.76 0.15 0.09
Matches are distributed among these distances:
156 4 0.01
157 87 0.26
158 120 0.36
159 116 0.35
160 5 0.02
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (154 bp):
GATCCCCGACTTGCGCATTATGCCTCTCCGACCGACTGAGCGCCCGCACGCTCGTTTCATGGGTT
GACTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACAGACTGAGGGTTAAGCAGCAGGATC
GGCAGCACGCAGGGGGACCAGGCC
Found at i:1345642 original size:26 final size:26
Alignment explanation
Indices: 1345613--1345665 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
1345603 GTTAGCTTAG
* *
1345613 GCATATAGTGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
*
1345639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1345665 G
1 G
1345666 ATCGGATCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1345853 original size:26 final size:26
Alignment explanation
Indices: 1345823--1345875 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1345813 GTTGACTTAG
1345823 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
** *
1345849 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1345875 G
1 G
1345876 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1346372 original size:26 final size:26
Alignment explanation
Indices: 1346324--1346374 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1346314 TGGCTTAGGT
*
1346324 ATACGGAGTTCATTCCATGTCTAAGC
1 ATACGGAGTTCATTCCATCTCTAAGC
1346350 ATACGGAGTTCATTCCCA-CTCTAAG
1 ATACGGAGTTCATT-CCATCTCTAAG
1346375 ATTTTGAGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.87
27 3 0.13
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCATCTCTAAGC
Found at i:1348611 original size:158 final size:159
Alignment explanation
Indices: 1348423--1348788 Score: 380
Period size: 158 Copynumber: 2.3 Consensus size: 159
1348413 CGGACGCCTG
* * * *
1348423 TTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAG-CCAGATCGAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCC-AGACCAGACCAAGGGT
*** * * * *
1348487 TGTGGCAGCGGGATCGACAGCACGCAGAGGGGGACCGGGCCGATCCCCGGCTTACGTA-TATGCC
65 TACAGCAACAGGATCGACAGCACGCAGA-GGGGACCGGGCCGATCCCCAGCTTACGTATTATACC
* * *
1348551 TCTCCGATCAGCTCAGCGCCCG-CATGCTCA
129 TCTCCGACCAGCTCAGCACCCGCCACGCTCA
* ** *
1348581 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-TAGTCTAAGATCGGACCAGACCAAGGGT
1 TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCAT-GTCTAAGCCCAGACCAGACCAAGGGT
* * * * * *
1348645 TACAGCAACAGGATTGATAGCACGTAGAGGGGACCGGGCCGATCTCCAGCTTGCGTATTCTACCT
65 TACAGCAACAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTACGTATTATACCT
* * *
1348710 CTCCGGCCTGCTGAGCACCCGCCACGCTCA
130 CTCCGACCAGCTCAGCACCCGCCACGCTCA
** *
1348740 TTTCGTGGGTTTGGCTTAGAAAAACGGAAGTTCATTCGCATGTCTAAGC
1 TTTCGTGGG-TTGGCTTAGGCATACGG-AGTTCATTC-CATGTCTAAGC
1348789 ATACGTTAGT
Statistics
Matches: 168, Mismatches: 32, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
157 28 0.17
158 93 0.55
159 16 0.10
160 13 0.08
161 9 0.05
162 8 0.05
163 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
TTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAGACCAGACCAAGGGTT
ACAGCAACAGGATCGACAGCACGCAGAGGGGACCGGGCCGATCCCCAGCTTACGTATTATACCTC
TCCGACCAGCTCAGCACCCGCCACGCTCA
Found at i:1349630 original size:158 final size:158
Alignment explanation
Indices: 1349294--1349651 Score: 392
Period size: 158 Copynumber: 2.3 Consensus size: 158
1349284 CGCCCGTTTT
* *
1349294 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGGCCCAGTAGGACCGAGGGTTGTGG
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA-GACCAGTAGGACCGAGGGTTGTGG
* * * * *
1349359 TAGTGTGACTGACAGCACGTAGAGGGGGATAGGGTCGATCCCCGGCTTGCGCATTATGCCTCTTC
65 TAGTGTGACTGACAGCACGCAGAGGGGAATAGGGTCAATCCCCGACTTGCGCATTATGCCTCTCC
* *
1349424 GATAGGCTCAGCGCTCGCACACTCATTTC
130 GATAGGCTCAGCGCCCGCACACTCATTCC
* * * *
1349453 ATGGGTTGACTTATGCATACGGAGTTCATTGCCA-GTCTAAGATCAG-AGCAGACTGAGGGTTGT
1 ATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGACCAGTAG--GACCGAGGGTTGT
*
1349516 GGTAGTAG-GA-TCGACAGCACGCAG-GAGGGAAT-GGG-CTAATCCCCGACTTGCGCATTCTGC
63 GGTAGT-GTGACT-GACAGCACGCAGAG-GGGAATAGGGTC-AATCCCCGACTTGCGCATTATGC
* * * *
1349576 CTCTCCGGCT-GGCTGAGCGCCCGCA-AGTTCGTTCC
124 CTCTCC-GATAGGCTCAGCGCCCGCACA-CTCATTCC
*
1349611 GTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAG
1349652 CATATGGAGT
Statistics
Matches: 168, Mismatches: 21, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
157 7 0.04
158 86 0.51
159 71 0.42
160 4 0.02
ACGTcount: A:0.20, C:0.23, G:0.32, T:0.25
Consensus pattern (158 bp):
ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGACCAGTAGGACCGAGGGTTGTGGT
AGTGTGACTGACAGCACGCAGAGGGGAATAGGGTCAATCCCCGACTTGCGCATTATGCCTCTCCG
ATAGGCTCAGCGCCCGCACACTCATTCC
Found at i:1349654 original size:26 final size:26
Alignment explanation
Indices: 1349625--1349677 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1349615 GTTGGCTTAG
1349625 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
1349651 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1349677 G
1 G
1349678 ATTTTGAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1350393 original size:26 final size:26
Alignment explanation
Indices: 1350357--1350409 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1350347 GTTGACTTAG
*
1350357 GCATACGAAGTTCA-TCCTCAGTCTAA
1 GCATACAAAGTTCATTCC-CAGTCTAA
1350383 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
1350409 G
1 G
1350410 ATCAGACCGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:1350849 original size:158 final size:158
Alignment explanation
Indices: 1350391--1350884 Score: 534
Period size: 158 Copynumber: 3.1 Consensus size: 158
1350381 AAGCATACAA
* * * *
1350391 AGTTCATTCC-CAGTCTAAGATCAGACCGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGTA
1 AGTTCATTCCAC-GTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * **
1350455 GGAGGGA-CTGAGCCGAT-CCTCGACTTGCGCATTTTGCCTCTCCGACCAGCTGAGCGCCCGCAC
65 GGGGGGATC-GGGCCGATCCCTAG-CTTGCGCATTATGCCTCTCCGGTCAGCTGAGCGCCCGCAC
* * * *
1350518 GCACGTTTTGTGGGTTGGCTTGGGCATAGGG
128 GCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * ** * * *
1350549 AGTTCATTCCACGTCTAA-TTCCCA-ACCGGATCAAGGGTTGTAGCAGCGGGACCGACAGCATGC
1 AGTTCATTCCACGTCTAAGAT--CAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGC
* * * * *
1350612 AGAGGGGGATCAGGCCGATCCCTGGCTTGCGCATTATGCCTCT-CTGTCCAGCTCAGCGCCCACA
64 AG-GGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCGGT-CAGCTGAGCGCCCGCA
* *
1350676 CGCTCGTTTCGTGGGTTGACTTAGGCATATGG
127 CGCTCGTTTCGTGGGTTGGCTTAGGCATACGG
* * *
1350708 AGTCCATTCC-CAGTCTAAGATCGGACCGGATCGAGGGTTGCGGTAGCAGGATCGACAGCACGCA
1 AGTTCATTCCAC-GTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCA
* * * * *
1350772 GGGGGGATCGGGTCGATCCCTAGCTTGCGCATTCTGCCTCTCCGGTCGGCTGAGCGCCGGCACGT
65 GGGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCGGTCAGCTGAGCGCCCGCACGC
1350837 TCGTTTCGTGGGTTGGCTTAGGCATACGG
130 TCGTTTCGTGGGTTGGCTTAGGCATACGG
*
1350866 AGTTCATTCCATGTCTAAG
1 AGTTCATTCCACGTCTAAG
1350885 CATACAGAGT
Statistics
Matches: 274, Mismatches: 50, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
157 1 0.00
158 143 0.52
159 124 0.45
160 6 0.02
ACGTcount: A:0.19, C:0.28, G:0.31, T:0.23
Consensus pattern (158 bp):
AGTTCATTCCACGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAG
GGGGGATCGGGCCGATCCCTAGCTTGCGCATTATGCCTCTCCGGTCAGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGGCTTAGGCATACGG
Found at i:1350894 original size:26 final size:26
Alignment explanation
Indices: 1350858--1350910 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1350848 GTTGGCTTAG
*
1350858 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACAGAGTTCATTCCCA-GTCTAA
1350884 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1350910 G
1 G
1350911 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1351286 original size:26 final size:26
Alignment explanation
Indices: 1351250--1351302 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1351240 GTTGACTTAG
*
1351250 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1351276 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1351302 G
1 G
1351303 ATCGAACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1358822 original size:26 final size:26
Alignment explanation
Indices: 1358786--1358838 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1358776 GTTGACTTAG
1358786 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1358812 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1358838 G
1 G
1358839 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1359102 original size:159 final size:160
Alignment explanation
Indices: 1358848--1359633 Score: 515
Period size: 159 Copynumber: 5.0 Consensus size: 160
1358838 GATCGAACTG
* * * * ** * * *
1358848 GACCGAGGGTTGTGACAGCAGGATCGG-TAGAATGCAG-GGGGGATCGGGCCGATCCCCGACTTA
1 GACCGAGGGTTCTGGCAGCGGGATCGGCTAGCACACAGAGAGGGATCGGGCCGATCCCCGGCTTG
* * * * * * *
1358911 CGCATTCTGCCTATCCGATCGGTTGAGCGCCCGGATGCCCGTTTCGTGGGTTGGCTTAGGCATAG
66 CGCATTATGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAG
1358976 GGAGTTCATTCCATGTCTAAGCCCTAGTCA
131 GGAGTTCATTCCATGTCTAAGCCCTAGTCA
* * * *
1359006 GACGGAGGGTTCTAGCAGCGGGATTGGCTA-CACACAGAGAGGGATCGGGTCGATCCCCGGCTTG
1 GACCGAGGGTTCTGGCAGCGGGATCGGCTAGCACACAGAGAGGGATCGGGCCGATCCCCGGCTTG
* * * * * *** * *
1359070 CGCATTATGCCTCTCTGGTCGGCTCAGTGCCCGTACGCTTTTTTCATGGGTTGACTTAGGCATAC
66 CGCATTATGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAG
** * ** *
1359135 AAAGTTCATTCCAAGTCTAAG-ATTGGATCA
131 GGAGTTCATTCCATGTCTAAGCCCTAG-TCA
* * * * * *
1359165 TACCAAGGGTTAC-GGTAGCAGGATCGAC-AGCACACA-AGAGGGGA-CTGGGCTGATCCCCGGC
1 GACCGAGGGTT-CTGGCAGCGGGATCGGCTAGCACACAGAGA-GGGATC-GGGCCGATCCCCGGC
* * * * *
1359226 TTGCGCGTTCTGCCTCTCCAGTTGGTTGAGCACCCGCACGCCCATTTCATGGGTTGGCTTAGGCA
63 TTGCGCATTATGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCA
* *
1359291 TAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTG
128 TAGGGAGTTCATTCCATGTCTAAGCCCTAGTC-A
* * * * ** * *
1359324 GACTGAGGGTTGTGGCAGCGGGA-CCGATAGCACGTAGAGGGGGATCGGGCCGATCCCTGGCTTG
1 GACCGAGGGTTCTGGCAGCGGGATCGGCTAGCACACAGAGAGGGATCGGGCCGATCCCCGGCTTG
* * ** * * * * * * * *
1359388 CGCATGATGCCTCTTCGACCGGCTCAGCACCCGCACACTCATTTCATGGGTTGACTTATGCATAT
66 CGCATTATGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAG
* ** **
1359453 GGAGTTTATTCCCA-GTCTAAGATC-AAACGA
131 GGAGTTCATT-CCATGTCTAAGCCCTAGTC-A
*** * * * * * * * *
1359483 GACTC-AGGGTTAC-CATAGCAGGATCGAC-AGTACACAGTG-GGAGACCGGGTCGATCCCTGAC
1 GAC-CGAGGGTT-CTGGCAGCGGGATCGGCTAGCACACAGAGAGG-GATCGGGCCGATCCCCGGC
* * * * * * ***
1359544 TTACGCATTCTACCTCTCCGATCGGCTGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCA
63 TTGCGCATTATGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCA
*
1359609 TACGGAGTTCATTCCATGTCTAAGC
128 TAGGGAGTTCATTCCATGTCTAAGC
1359634 ATACGGAGTT
Statistics
Matches: 475, Mismatches: 133, Indels: 39
0.73 0.21 0.06
Matches are distributed among these distances:
158 40 0.08
159 426 0.90
160 9 0.02
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (160 bp):
GACCGAGGGTTCTGGCAGCGGGATCGGCTAGCACACAGAGAGGGATCGGGCCGATCCCCGGCTTG
CGCATTATGCCTCTCCGGTCGGTTGAGCGCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAG
GGAGTTCATTCCATGTCTAAGCCCTAGTCA
Found at i:1359475 original size:318 final size:318
Alignment explanation
Indices: 1358892--1359633 Score: 870
Period size: 318 Copynumber: 2.3 Consensus size: 318
1358882 CAGGGGGGAT
* * * * * *
1358892 CGGGCCGATCCCCGACTTACGCATTCTGCCTATCCGATCGGTTGAGCGCCCGGATGCCCGTTTCG
1 CGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCCCGTTTCA
*
1358957 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGTCAGACGGAGGGTTCTAGC
66 TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACGGAGGGTTCTAGC
** * * *
1359022 AGCGGGATTGGCTACACACAGAGAGGGATCGGGTCGATCCCCGGCTTGCGCATTATGCCTCTCTG
131 AGCGGGATCCGATACACACAGAGAGGGATCGGGCCGATCCCCGGCTTGCGCATGATGCCTCTCTG
** ** * * **
1359087 GTCGGCTCAGTGCCCGTACGCTTTTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCAAGTC
196 ACCGGCTCAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCAAGTC
** * * **
1359152 TAAGATTGGATC-ATAC-CAAGGGTTACGGTAGCAGGATCGACAGCACACAAGAGGG-GAC
261 TAAGA-TCAAACGAGACTC-AGGGTTACCATAGCAGGATCGACAGCACAC-AGAGGGAGAC
* * * * * *
1359210 TGGGCTGATCCCCGGCTTGCGCGTTCTGCCTCTCC-AGTTGGTTGAGCACCCGCACGCCCATTTC
1 CGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGA-TCGGTTGAGCACCCGCACGCCCGTTTC
* * * *
1359274 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAG-CTGGACTGAGGGTTGTG
65 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTC-AGACGGAGGGTTCTA
** * *
1359338 GCAGCGGGA-CCGATAGCACGTAGAGGGGGATCGGGCCGATCCCTGGCTTGCGCATGATGCCTCT
129 GCAGCGGGATCCGATA-CACACAGAGAGGGATCGGGCCGATCCCCGGCTTGCGCATGATGCCTCT
* *** * *
1359402 -TCGACCGGCTCAGCACCCGCACACTCATTTCATGGGTTGACTTATGCATATGGAGTTTATTCCC
193 CT-GACCGGCTCAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCA
* *
1359466 AGTCTAAGATCAAACGAGACTCAGGGTTACCATAGCAGGATCGACAGTACACAGTGGGAGAC
257 AGTCTAAGATCAAACGAGACTCAGGGTTACCATAGCAGGATCGACAGCACACAGAGGGAGAC
* * * **
1359528 CGGG-TCGATCCCTGACTTACGCATTCTACCTCTCCGATCGGCTGAGCACCCGCACGCTTGTTTC
1 CGGGCT-GATCCCCGACTTACGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCCCGTTTC
*
1359592 ATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
65 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGC
1359634 ATACGGAGTT
Statistics
Matches: 355, Mismatches: 60, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
317 15 0.04
318 338 0.95
319 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (318 bp):
CGGGCTGATCCCCGACTTACGCATTCTGCCTCTCCGATCGGTTGAGCACCCGCACGCCCGTTTCA
TGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGTCAGACGGAGGGTTCTAGC
AGCGGGATCCGATACACACAGAGAGGGATCGGGCCGATCCCCGGCTTGCGCATGATGCCTCTCTG
ACCGGCTCAGCACCCGCACACTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCAAGTC
TAAGATCAAACGAGACTCAGGGTTACCATAGCAGGATCGACAGCACACAGAGGGAGAC
Found at i:1359636 original size:26 final size:26
Alignment explanation
Indices: 1359606--1359658 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1359596 GTTGGCTTAG
1359606 GCATACGGAGTTCATTCC-ATGTCTAA
1 GCATACGGAGTTCATTCCTA-GTCTAA
1359632 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
1359658 G
1 G
1359659 ATTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:1361253 original size:26 final size:26
Alignment explanation
Indices: 1361216--1361268 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1361206 GTTGACTTAG
1361216 GCATACAGAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
*
1361242 GCATAC-GAAGTTCATTCCTAGTCTAA
1 GCATACAG-AGTTCATCCCTAGTCTAA
1361268 G
1 G
1361269 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:1361708 original size:158 final size:158
Alignment explanation
Indices: 1361242--1361742 Score: 469
Period size: 158 Copynumber: 3.2 Consensus size: 158
1361232 CCTAGTCTAA
* * **
1361242 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAGGATCGGTA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTG-GGTAGCAGGATCGACA
** *** * * *
1361307 GCACGCAGG-GGGGGTCGGGCCGATCTGTGGCTTGCACATTCTGCCTCTCCGGCCGGCTAAACGC
65 GCACGCAGGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
*
1361371 CCGTACGC-CTGTTTCGTGGGTTGGCTTAG
130 CCGTACGCTC-GTTTCGTGGGTTGACTTAG
* * * ** * *
1361400 GCATAGGGAGTTCATTCC-ATGTCTAAG-CCCCAGTCGGACCGAGGGTTGGGTAGC-GAGA-CCA
1 GCATACGAAGTTCATTCCTA-GTCTAAGATCGGA-CCGGACCGAGGGTTGGGTAGCAG-GATCGA
* * * * * * * * * * *
1361461 GCAGTACGTA-GAGGGGGACCGAGCCGATCCCCGACTTACGCATTATGCCTTTTCGATTGGCTCA
63 -CAGCACGCAGGA-GGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAA
* * * * *
1361525 GCGCCCGTACACTCATTTTGGGGGTTGACTTAT
126 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAG
*
1361558 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATTGACA
1 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTG-GGTAGCAGGATCGACA
* * * *
1361623 GCACCCAGGAGGGGACCGGGCCGATCCCCGGCTTGCGCAATCTGCCTCTCCGGTCGGCTGAGCAC
65 GCACGCAGGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGC
1361688 CCG-ACGCTCGTTTCGTGGGTTGACTTAG
130 CCGTACGCTCGTTTCGTGGGTTGACTTAG
* * * *
1361716 GCATACGGAGTCCATCCCCAGTCTAAG
1 GCATACGAAGTTCATTCCTAGTCTAAG
1361743 CATACGGAGT
Statistics
Matches: 263, Mismatches: 67, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
156 3 0.01
157 16 0.06
158 175 0.67
159 65 0.25
160 4 0.02
ACGTcount: A:0.19, C:0.27, G:0.32, T:0.22
Consensus pattern (158 bp):
GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGGGTAGCAGGATCGACAG
CACGCAGGAGGGGACCGGGCCGATCCCCGGCTTGCGCATTCTGCCTCTCCGGTCGGCTAAGCGCC
CGTACGCTCGTTTCGTGGGTTGACTTAG
Found at i:1361752 original size:26 final size:26
Alignment explanation
Indices: 1361716--1361768 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1361706 GTTGACTTAG
1361716 GCATACGGAGTCCATCCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
* *
1361742 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTCCATCCCCAGTCTAA
1361768 G
1 G
1361769 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTCCATCCCCAGTCTAA
Found at i:1361872 original size:183 final size:185
Alignment explanation
Indices: 1361558--1361910 Score: 467
Period size: 184 Copynumber: 1.9 Consensus size: 185
1361548 GTTGACTTAT
* * ** ** *
1361558 GCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATTGACA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACA
* * * * *
1361623 GCACCCAGGAGGGGACCGGGCCGATCCCCGGCTTGCGCAATCTGCCTCTCCGGTCGGCTGAGCAC
66 GCACCCAAGAGGGGACCGAGCCGATCCCCGGCTTGCACAATCTACCTCTCCGGTCGGCTAAGCAC
*
1361688 CCG-ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATCCCCAGTCTAA
131 CCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATCCCCAGTCTAA
* * ** *
1361742 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGTTGGATCGGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACA
* * * *
1361807 GCACGCAAG-GGGGACCGAGCCGATCCCTGGCTTGCACATTCTACCTCTCCGGTCGGTTAAGCAC
66 GCACCCAAGAGGGGACCGAGCCGATCCCCGGCTTGCACAATCTACCTCTCCGGTCGGCTAAGCAC
* * *
1361871 CCGCACGCCCGTTTCGTGGGTTGGCTTATGCATAGGGAGT
131 CCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGT
1361911 TCGTTCCATG
Statistics
Matches: 143, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
183 51 0.36
184 92 0.64
ACGTcount: A:0.20, C:0.29, G:0.30, T:0.21
Consensus pattern (185 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGACAGCAGGATCGACA
GCACCCAAGAGGGGACCGAGCCGATCCCCGGCTTGCACAATCTACCTCTCCGGTCGGCTAAGCAC
CCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATCCCCAGTCTAA
Found at i:1362158 original size:500 final size:501
Alignment explanation
Indices: 1361166--1362466 Score: 1522
Period size: 500 Copynumber: 2.6 Consensus size: 501
1361156 CTTCAACCGA
*
1361166 CCTCTCCGGTCGGCTTAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
1 CCTCTCCGGTCGGCTGAGCGCCCG-ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
* * * * * *
1361231 CCCTAGTCTAAGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAG
65 CCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAG
* * * ** * *
1361296 CAGGATCGGTAGCACGCAGGGGGGGTCGGGCCGATCTGTGGCTTGCACATTCTGCCTCTCCGGCC
130 CAGGATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTACCTCTCCGGTC
* * * *
1361361 GGCTAAACGCCCGTACGCCTGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
195 GGCTAAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAA
* * *
1361426 GCCCCAGTCGGACCGAGGGTTG-GGTAGCGAGACCAGCAGTACGTAGAGGGGGACCGAGCCGATC
260 GCCCTAGTCGGACCGAGGGTTGTGGTAGCGAGACCAGCAGCACGCAGAGGGGGACCGAGCCGATC
* ** * * ** *
1361490 CCCGACTTACGCATTATGCCTTTTCGATTGGCTCAGCGCCCGTACACTCATTTTGGGGGTTGACT
325 CCCGACTTACACATTATGCCACTTCGATTGGCTCAACGCCCGCACACTCATTTCAGGCGTTGACT
* * ** *
1361555 TATGCATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTGGTAGCAGGATTG
390 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCAGGATCG
*
1361620 ACAGCACCCAGGAGGGGACCGGGCCGATCCCCGGCTTGCGCAATCTG
455 ACAGCACACAGGAGGGGACCGGGCCGATCCCCGGCTTGCGCAATCTG
* * *
1361667 CCTCTCCGGTCGGCTGAGCACCCGACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTCCATC
1 CCTCTCCGGTCGGCTGAGCGCCCGACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATC
* * *
1361732 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGT
66 CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGC
* * *
1361797 TGGATCGGCAGCACGCAAGGGGGACCGAGCCGATCCCTGGCTTGCACATTCTACCTCTCCGGTCG
131 AGGATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTACCTCTCCGGTCG
* * *
1361862 GTTAAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTATGCATAGGGAGTTCGTTCCATGTCTAAG
196 GCTAAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
* * * * * * *
1361927 CCCT-GACCGTACCGAGGGTTGTGGTAGCGGGATC-GATAGCACGCAGAGGGGGACCGGGCTGAT
261 CCCTAG-TCGGACCGAGGGTTGTGGTAGCGAGACCAG-CAGCACGCAGAGGGGGACCGAGCCGAT
* * * * * ** ** * *
1361990 CCCTGGCTTGCATATTATGCCACTTCGATTGGTTCAACGCTTGCATGCTCGTTTCATGCGTTGAC
324 CCCCGACTTACACATTATGCCACTTCGATTGGCTCAACGCCCGCACACTCATTTCAGGCGTTGAC
* * *
1362055 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGTAGGATC
389 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCAGGATC
* * *
1362120 GACAGCACACAGG-GGGGATCGGGCC-AGTCCCTGGCTTGCGCATTCTG
454 GACAGCACACAGGAGGGGACCGGGCCGA-TCCCCGGCTTGCGCAATCTG
* * * *
1362167 CCTCTCCGGTCAGCTGAGCGCCC-ACAAGCTCGTTTTGTGGGTTGGCTTAGGCATATAGAGTTCA
1 CCTCTCCGGTCGGCTGAGCGCCCGAC--GCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCA
* * * * *
1362231 T-TCCATGTCCAAGCATACGGAGTTCATTCCCAGTCT-AGCATTGGACCGAACTGAGGGTTGCGA
64 TCCCCA-GTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-ATCGGACCGGACCGAGGG-T----
* * * **
1362294 TAGCAAGACCAACAACAGGATCGGCAGCACGTAAGGGGGATCGGGCCAAT-CCTCGGCTTGCGTA
122 TA-C--G----ACAGCAGGATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCT-GGCTTGCACA
* * * * * *
1362358 TTTTCCCTCTCCGATCGGCTAAGCACCCGCATGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
179 TTCTACCTCTCCGGTCGGCTAAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAG
*
1362423 TTCATTCCATGTCTAAGCCCTAGTCGGACCGAAGGTTGTGGTAG
244 TTCATTCCATGTCTAAGCCCTAGTCGGACCGAGGGTTGTGGTAG
1362467 TAGGACTGGC
Statistics
Matches: 672, Mismatches: 106, Indels: 32
0.83 0.13 0.04
Matches are distributed among these distances:
499 4 0.01
500 280 0.42
501 244 0.36
502 1 0.00
506 2 0.00
507 1 0.00
509 1 0.00
512 3 0.00
513 135 0.20
514 1 0.00
ACGTcount: A:0.19, C:0.27, G:0.30, T:0.24
Consensus pattern (501 bp):
CCTCTCCGGTCGGCTGAGCGCCCGACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATC
CCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGACAGC
AGGATCGGCAGCACGCAAGGGGGATCGGGCCGATCCCTGGCTTGCACATTCTACCTCTCCGGTCG
GCTAAGCACCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAG
CCCTAGTCGGACCGAGGGTTGTGGTAGCGAGACCAGCAGCACGCAGAGGGGGACCGAGCCGATCC
CCGACTTACACATTATGCCACTTCGATTGGCTCAACGCCCGCACACTCATTTCAGGCGTTGACTT
AGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGTAGCAGGATCGA
CAGCACACAGGAGGGGACCGGGCCGATCCCCGGCTTGCGCAATCTG
Found at i:1362228 original size:158 final size:158
Alignment explanation
Indices: 1361742--1362234 Score: 497
Period size: 158 Copynumber: 3.1 Consensus size: 158
1361732 CCCAGTCTAA
* ** * *
1361742 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACAGTTGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
* * * *
1361807 GCACGCAAGGGGGACCGAGCCGATCCCTGGCTTGCACATTCTACCTCTCCGGTCGGTTAAGCACC
66 GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGTTAAGCGCC
* * *
1361872 CGCACGCCCGTTTCGTGGGTTGGCTTAT
131 CGCAAGCTCGTTTCGTGGGTTGGCTTAG
* * ** * * ** ** *
1361900 GCATAGGGAGTTCGTT-CCATGTCTAAGCCCTGACCGTACCGAGGGTTGTGGTAGCGGGATCGAT
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGAC
* * * * * * *
1361964 AGCACGCAGAGGGGGACCGGGCTGATCCCTGGCTTGCATATTATGCCACTTCGATTGGTTCAA-C
65 AGCACGCAG-GGGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGTT-AAGC
** * * * *
1362028 GCTTGCATGCTCGTTTCATGCGTTGACTTAG
128 GCCCGCAAGCTCGTTTCGTGGGTTGGCTTAG
* *
1362059 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGTAGTAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
* * * * * *
1362124 GCACACAGGGGGGATCGGGCC-AGTCCCTGGCTTGCGCATTCTGCCTCTCCGGTCAGCTGAGCGC
66 GCACGCAGGGGGGACCGGGCCGA-TCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGTTAAGCGC
* *
1362188 CCACAAGCTCGTTTTGTGGGTTGGCTTAG
130 CCGCAAGCTCGTTTCGTGGGTTGGCTTAG
**
1362217 GCATATAGAGTTCATTCC
1 GCATACGGAGTTCATTCC
1362235 ATGTCCAAGC
Statistics
Matches: 260, Mismatches: 69, Indels: 12
0.76 0.20 0.04
Matches are distributed among these distances:
157 5 0.02
158 130 0.50
159 120 0.46
160 5 0.02
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.24
Consensus pattern (158 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGTAGGATCGACA
GCACGCAGGGGGGACCGGGCCGATCCCTGGCTTGCACATTCTGCCTCTCCGGTCGGTTAAGCGCC
CGCAAGCTCGTTTCGTGGGTTGGCTTAG
Found at i:1363126 original size:26 final size:26
Alignment explanation
Indices: 1363097--1363149 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1363087 GTTGACTTAG
1363097 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
1363123 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1363149 G
1 G
1363150 ATTTTAAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1364289 original size:158 final size:156
Alignment explanation
Indices: 1363810--1364310 Score: 469
Period size: 159 Copynumber: 3.2 Consensus size: 156
1363800 CCCAGTTTAA
* * *
1363810 GCATACGGAGCTCATTCC-TAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGATCGAC
1 GCATACGGAGTTCATTCCAT-GTCTAAGAT-AGACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * * * * * * *
1363874 AGCATGCT-GGGGGACTGGGCCGATCCCTGGCTTTCTCATTTTGCCTCTTCGATTGGCTGAGCGC
64 AGCACG-TAGGGGGACTGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTGAGCGC
* * *
1363938 CCGCACGCTTGTTTCGTGGGTTGGCTTAG
128 CCGCACGCTCGTTTCGTGGGTTTGATTAG
* ** * * * * *
1363967 GCATAGGGAGTTCATTCCATGTCTAAGCCCCA-ACCAGGCCGAGGGTTGTGGCAGCGGGA-CTGG
1 GCATACGGAGTTCATTCCATGTCTAAG--ATAGACCAGACCGAGGGTTGCGGTAGCAGGATC-GA
* * * * ** * *
1364030 CAGCACGCAGAGGGGGACCGGGCCGATCCTCGACTTGCGCATTATGCCTCTCCGGCCGGCTCAGT
63 CAGCACG--TAGGGGGACTGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTGAGC
**
1364095 GCCCGCACGCTCG-TTCTGTTAG-TTGACTTAG
126 GCCCGCACGCTCGTTTC-GTGGGTTTGA-TTAG
* * *
1364126 GCATACGAAGTTCATTCCCA-GTCTAAGATAGGACCAGACCGAGGGTTGGGGTAGCAGGATCAAC
1 GCATACGGAGTTCATT-CCATGTCTAAGATA-GACCAGACCGAGGGTTGCGGTAGCAGGATCGAC
* * *
1364190 AGCACGTAGGAGGGATTGGGCC-AGTCCCCGACTTACGCATTCTGCCTCTCCGATCGGTTGAGCG
64 AGCACGTAGG-GGGACTGGGCCGA-TCCCCGACTTACGCATTATGCCTCTCCGATCGGCTGAGCG
*
1364254 CCTGCACGCTCGTTTCGTGGGTTTGATTAG
127 CCCGCACGCTCGTTTCGTGGGTTTGATTAG
1364284 GCATACGGAGTTCATTCCATGTCTAAG
1 GCATACGGAGTTCATTCCATGTCTAAG
1364311 CATATAGAGT
Statistics
Matches: 270, Mismatches: 57, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
156 1 0.00
157 59 0.22
158 88 0.33
159 118 0.44
160 4 0.01
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (156 bp):
GCATACGGAGTTCATTCCATGTCTAAGATAGACCAGACCGAGGGTTGCGGTAGCAGGATCGACAG
CACGTAGGGGGACTGGGCCGATCCCCGACTTACGCATTATGCCTCTCCGATCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTTGATTAG
Found at i:1364677 original size:26 final size:26
Alignment explanation
Indices: 1364641--1364690 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
1364631 GGCTCAGGCA
1364641 TACGAAGTTCATTCC-ATGTCTAAGCG
1 TACGAAGTTCATTCCTA-GTCTAAGCG
*
1364667 TACGGAGTTCATTCCTAGTCTAAG
1 TACGAAGTTCATTCCTAGTCTAAG
1364691 ATCGGATGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGAAGTTCATTCCTAGTCTAAGCG
Found at i:1364892 original size:354 final size:354
Alignment explanation
Indices: 1364095--1364892 Score: 958
Period size: 354 Copynumber: 2.3 Consensus size: 354
1364085 CCGGCTCAGT
* * *
1364095 GCCCGCACGCTC-GTTCTGTTAGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT-AGG
1 GCCCGCACGCTCATTTC-GTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-G
* * *
1364158 ACCAGACCGAGGGTTGGGGTAGCAGGATCAACAGCACGTAGGAGGGATTGGGCCAGTCCCCGACT
64 ACCAGACCGAGGGTTGCGGTAGCAGGATCAACAGCACGCAGGAGGGATCGGGCCAGTCCCCGACT
* * ** * * * * *
1364223 TACGCATTCTGCCTCTCCGATCGGTTGAGCGCCTGCACGCTCGTTTCGTGGGTTTGATTAGGCAT
129 TACGCATTCTACCTCTCCGACCGACTGAGCGCCTGCAAGCTCATTTCATGGGTTGGATCAGGCAT
* * *
1364288 ACGGAGTTCATTCCATGTCTAAGCATATAGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAG
194 ACGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAGGACCACACCGAG
* ** * * *
1364353 GGTTGCGGTAGCAGGACCAGCAGCAGGATCGATAGCGCGTAGGGGGGATTGGGTCGATCCCCGGT
259 GGTTGCGGTAGCAGGACCAGCAGCAGGATCGATAGCACGTAGGGGGGATCAGGCCGATACCCGGC
* * **
1364418 TTGTGCATTTTGGCTCTTCGATCGGCTGAGC
324 TTGTGCATTCTGCCTCTTCGATCGAATGAGC
* * * *
1364449 GCCCGTACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGAT
1 GCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * ** * * * * * *
1364514 CGGATCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGGGGGGATCGGGTCGGTCCTCGACTTG
66 CAGACCGAGGGTTGCGGTAGCAGGATCAACAGCACGCAGGAGGGATCGGGCCAGTCCCCGACTTA
* * * * *
1364579 CGCATTCTACCTCTTCGACCGACTGAGCG-CTCGTAATCTCATTTTATGGGTTGGCTCAGGCATA
131 CGCATTCTACCTCTCCGACCGACTGAGCGCCT-GCAAGCTCATTTCATGGGTTGGATCAGGCATA
* * * * **
1364643 CGAAGTTCATTCCATGTCTAAGCGTACGGAGTTCATTCCTAGTCTAAGATCGGATGACACCGAGG
195 CGAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAGGACCACACCGAGG
* * *
1364708 GTTGCGGTAGCAGGACTAGCAGCAGGGTCGATAGCACGTAGGGGGGATCAGGCCGATACTCGGCT
260 GTTGCGGTAGCAGGACCAGCAGCAGGATCGATAGCACGTAGGGGGGATCAGGCCGATACCCGGCT
*
1364773 TGTGCATTCTGCCTCTTCGGTCGAATGAGC
325 TGTGCATTCTGCCTCTTCGATCGAATGAGC
* * * *
1364803 GCCTGCACGCTCATTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCTCCAG
1 GCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCA-GTCTAAGAT-CAG
*
1364867 -CCAGACCGAGGGTTGTGGTAGCAGGA
64 ACCAGACCGAGGGTTGCGGTAGCAGGA
1364893 CCGGTAGCGG
Statistics
Matches: 369, Mismatches: 70, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
353 5 0.01
354 359 0.97
355 5 0.01
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.25
Consensus pattern (354 bp):
GCCCGCACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACCGAGGGTTGCGGTAGCAGGATCAACAGCACGCAGGAGGGATCGGGCCAGTCCCCGACTTA
CGCATTCTACCTCTCCGACCGACTGAGCGCCTGCAAGCTCATTTCATGGGTTGGATCAGGCATAC
GAAGTTCATTCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATAGGACCACACCGAGGG
TTGCGGTAGCAGGACCAGCAGCAGGATCGATAGCACGTAGGGGGGATCAGGCCGATACCCGGCTT
GTGCATTCTGCCTCTTCGATCGAATGAGC
Found at i:1365019 original size:171 final size:171
Alignment explanation
Indices: 1364701--1365129 Score: 542
Period size: 171 Copynumber: 2.5 Consensus size: 171
1364691 ATCGGATGAC
* * * * * *
1364701 ACCGAGGGTTGCGGTAGCAGGACTA-GCAGCAGGG-TCGATAGCACGTAG-GGGGGATCAGGCCG
1 ACCGAGGGTTGTGGTAGCAGGAC-AGGTAGC-GGGATCGATAGCACGCAGAGGGGGACCGGGCTG
* * * *
1364763 ATACTCGGCTTGTGCATTCTGCCTCTTCGGTCGAATGAGCGCCTGCACGCTCATTTCGTGGGTTG
64 ATCCCCGGCTTGTGCATTATGCCTCTCCGGTCGAATGAGCGCCTGCACGCTCATTTCGTGGGTTG
* *
1364828 GCTTAGGCATACGGAGTTCATTCCATGTCTAAGCTCCAGCCAG
129 GCTTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAGCCAG
* *
1364871 ACCGAGGGTTGTGGTAGCAGGACCGGTAGCGGGATCGTTAGCACGCAGAGGGGGACCGGGCTGAT
1 ACCGAGGGTTGTGGTAGCAGGACAGGTAGCGGGATCGATAGCACGCAGAGGGGGACCGGGCTGAT
* * ** * *
1364936 CCCCAGCTTGCGCATTATGCCTCTCCGGTCGGTTGAGCTCCTGCACGCTCGTTTCGTGGGTTGGC
66 CCCCGGCTTGTGCATTATGCCTCTCCGGTCGAATGAGCGCCTGCACGCTCATTTCGTGGGTTGGC
*
1365001 TTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAGCCGG
131 TTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAGCCAG
* * * * ** * * *
1365042 ACTGAGGGTTGTGGCAGCAAGACAGGTAGCGGGATAGGCAG-ATGCAGAGGGGGACTGGTCTGAT
1 ACCGAGGGTTGTGGTAGCAGGACAGGTAGCGGGATCGATAGCACGCAGAGGGGGACCGGGCTGAT
1365106 CCCCGGCTTGTGCATTATGCCTCT
66 CCCCGGCTTGTGCATTATGCCTCT
1365130 TCGATCGACC
Statistics
Matches: 223, Mismatches: 33, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
169 3 0.01
170 80 0.36
171 140 0.63
ACGTcount: A:0.18, C:0.25, G:0.34, T:0.23
Consensus pattern (171 bp):
ACCGAGGGTTGTGGTAGCAGGACAGGTAGCGGGATCGATAGCACGCAGAGGGGGACCGGGCTGAT
CCCCGGCTTGTGCATTATGCCTCTCCGGTCGAATGAGCGCCTGCACGCTCATTTCGTGGGTTGGC
TTAGGCATACGGAGTTCATTCCATATCTAAGCCCCAGCCAG
Found at i:1365222 original size:25 final size:26
Alignment explanation
Indices: 1365188--1365239 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1365178 GTTGACTTAG
*
1365188 GCATACGGAG-TCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
*
1365213 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1365239 G
1 G
1365240 ATAGGACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 10 0.42
26 14 0.58
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1365519 original size:158 final size:158
Alignment explanation
Indices: 1365321--1365714 Score: 413
Period size: 158 Copynumber: 2.5 Consensus size: 158
1365311 GCACATTCTA
* * * *
1365321 CCTCTCCGGCCGGCTGAGCGCCC-ATACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCA
1 CCTCTCCGGTCGGCTGAGTGCCCGA-ACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCA
*** *
1365385 TTCCATGTCTAAGCCCCAA-CTGGACTAAGGGTTGTGGGAGCGGGATCGACAGCACGCAGAGGAG
65 TTCCATGTCTAAGCCCCAATC-GGACTAAGGGTTACAGGAGCAGGATCGACAGCACGCAG-GGAG
* *
1365449 GA-TGGGTTGATCCCC-GACTTGCGCATTATG
128 GACTGGGCTGATCCCCAG-CTGGCGCATTATG
* * *
1365479 CCTCTCCGGTCGGCTCAGTGCCCGAACGCTCATTTTGTGGGTTGAG-TTAGGCATACGGAGTTCA
1 CCTCTCCGGTCGGCTGAGTGCCCGAACGCTCGTTTCGTGGGTTG-GCTTAGGCATACGGAGTTCA
***** * * * * *
1365543 TTCCCA-GTCTAAGATTGGATCGGACTGAGGGTTACAGTAGCAGGATTGACAGCACGTAGGGGGG
65 TT-CCATGTCTAAGCCCCAATCGGACTAAGGGTTACAGGAGCAGGATCGACAGCACGCAGGGAGG
* * *
1365607 ACTGGGCTGGTCCCCAGCTGGCGCATTTTT
129 ACTGGGCTGATCCCCAGCTGGCGCATTATG
* * * * *
1365637 CCTCTCCGATCGGCTGAGTGCCCGCATGCTCGGTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT
1 CCTCTCCGGTCGGCTGAGTGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
1365702 TCCATGTCTAAGC
66 TCCATGTCTAAGC
1365715 ATACGGAGTT
Statistics
Matches: 193, Mismatches: 35, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
157 9 0.05
158 177 0.92
159 7 0.04
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.25
Consensus pattern (158 bp):
CCTCTCCGGTCGGCTGAGTGCCCGAACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCAT
TCCATGTCTAAGCCCCAATCGGACTAAGGGTTACAGGAGCAGGATCGACAGCACGCAGGGAGGAC
TGGGCTGATCCCCAGCTGGCGCATTATG
Found at i:1365739 original size:26 final size:26
Alignment explanation
Indices: 1365687--1365739 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1365677 GTTGGCTTAG
*
1365687 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTATAA
*
1365713 GCATACGGAGTTCATTCCCA-GTATAA
1 GCATACAGAGTTCATT-CCATGTATAA
1365739 G
1 G
1365740 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTATAA
Found at i:1365925 original size:26 final size:26
Alignment explanation
Indices: 1365895--1365947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1365885 GTTGACTTAG
1365895 GCATACGAAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* * *
1365921 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1365947 G
1 G
1365948 ATCTAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1366274 original size:26 final size:26
Alignment explanation
Indices: 1366238--1366290 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1366228 GTTGGCTTAG
1366238 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
1366264 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1366290 G
1 G
1366291 AGTTTGAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1368760 original size:26 final size:26
Alignment explanation
Indices: 1368724--1368774 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1368714 TTGGCTTAGG
1368724 CATACAGAGTTTATTCCATGTGTAAT
1 CATACAGAGTTTATTCCATGTGTAAT
*
1368750 CATACGGAGTTTATTCCATGTGTAA
1 CATACAGAGTTTATTCCATGTGTAA
1368775 GATCAGACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (26 bp):
CATACAGAGTTTATTCCATGTGTAAT
Found at i:1368936 original size:26 final size:26
Alignment explanation
Indices: 1368907--1368959 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1368897 GTTGACTTAG
*
1368907 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
* *
1368933 GCATTCGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATCCCCAGTCTAA
1368959 G
1 G
1368960 ATCTAACCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATCCCCAGTCTAA
Found at i:1368955 original size:882 final size:874
Alignment explanation
Indices: 1367121--1368924 Score: 2025
Period size: 882 Copynumber: 2.1 Consensus size: 874
1367111 TCCGATCGGT
* * * * * * * * * *
1367121 TGAGCACCCGCACGCTTGTTTCATGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTCTAAGCC
1 TGAGCACCCCCACGCTCGTATCGTGGGTTAGCTTAGGCATACGGAGTTCATCCCATCTGTAAACC
* * *
1367186 CCAGCCGGACCGAGGGTTGTGGCAGCAGGACCGATAGCGGGATCAGCAGCATGCAGAAGGGGATC
66 CCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGAGATCAGCAGCATGCAGAAGGGGATC
* * * ** ** *
1367251 GGGCTAATCCCCAGCTTGTGCATTATGCCTTTCCAACCGGCCTATCTGACCGGCTGAGCGCCCGC
131 AGGCTAATCCCCAGCTTGGGCATTATGCCTCTCCAACCAACCTATCTGACAAGCTGAGCGCCCAC
* * *
1367316 ATGCTCGTTTCATGGGTTGACTTAGGCTTATGGAGTTCATCCCCAATTTAAGCATACAGAGTTCA
196 ACGCTCGTTTCATGGGTTGACTTAGGCTTAAGGAGTTCATCCCCAATCTAAGCATACAGAGTTCA
** * *
1367381 TTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGTAGCAGCAAGATCGGTAGCACACATGGGGGA
261 TTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACAGCAACAAGATCGGTAGCACACAGGGGGGA
* ** * * * * *
1367446 CTGAGTCGATCCCCGACTTACACATTCTGCCTCTTCGATTGACTGAGCACCCGCATGCCTATTTT
326 CCGAACCGATCCCCGACCTACACATTCTGCCTCTGCGATGGACTGAGCACCCGCACGCCTATTTC
* * * *
1367511 GTGGGTTGGCTTAGGCATAGGGAGTTTATTCCATGTCTAAGCCCCAGTCAGACCGATGATTGTCA
391 ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGATTGTCA
* * * * *
1367576 CAATAGGACCAACAGCACGCAGATGGGGACTAGGTTGATCCTCGGCTTGCGCATTATGCCTTTTC
456 CAATA-GACCAACAGCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTTTCC
** * *
1367641 GGTTGGCTCAGTGCCCGAACGCTCATTTCATGGGTTGACTTATGCATACGAAGTTCATTCCACGT
520 GCCTGGCTCAGTGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCACGT
* * * * *
1367706 TTAAGATCGGATTGGAACGAGGGTTGCGGCAGCAGGATTGACAACACGCAGGGGGGGATCGGGTC
585 CTAAGATCGGATTGGAACGAGGGTTGCAGCAGCAAGATTGACAACACGCAAGGGGGGATCGGGCC
**
1367771 GGTCCTCGGCTTGCACATTCTACCTCCCCAGCCGATTGAATGCCCACACGCTTGTTTCGTGGGTT
650 GGTCCTCGGCTTGCACATTCTACCTCCCCAGCCGATTGAATGCCCACACGCTCATTTCGTGGGTT
* * *
1367836 GGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATACAGAGCTCATTCGTAGTCTAAGATCGG
715 GGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGCTCATTCATAGTCTAAGATCAG
* * *
1367901 ATCGGACCGAGCGTTACGGTAGCAAGACCCACTGCAGGATCGATAGCATACAAGGGGGATCGGGC
780 ATCGGACCAAGCGTTA--GTAGCAAG--CCA---CAGGATCGACAGCACACAAGGGGGATCGGGC
* * * * *
1367966 TGATCCACAACTTGCATATTCTACCTCTCCGGCCGGC
838 TAATCCACAACTTACACATTCTACCTCTCAGGCCGAC
*
1368003 TGAGCACCCCCACGCTCGTATCGTGGGTTAGCTTAGGCATACGGAGTTCATCCCATGTGTAAACC
1 TGAGCACCCCCACGCTCGTATCGTGGGTTAGCTTAGGCATACGGAGTTCATCCCATCTGTAAACC
* * * * * * * *
1368068 CCAGTCGGACTGAGGGTTGTGGTAGCAGGATCGGCAGTGAGATCGGTAGCATGCAGAGGGGGATC
66 CCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGAGATCAGCAGCATGCAGAAGGGGATC
* * * * **
1368133 AGGCTGAA-CCCTAGCTTGGGCATTATGCCTCTCCGACCAACCTCTTTGGTAAGCTGAGCGCCCA
131 AGGCT-AATCCCCAGCTTGGGCATTATGCCTCTCCAACCAACCTATCTGACAAGCTGAGCGCCCA
* * *
1368197 CACGCTCGTTTCATGGGTTGACTTAGG-TATAAGGAGTTCATCCCCAGTCTAAGGATACGGAGTT
195 CACGCTCGTTTCATGGGTTGACTTAGGCT-TAAGGAGTTCATCCCCAATCTAAGCATACAGAGTT
* * * * *
1368261 CATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTACGGCAATAGGATCGGTAGCACGCAGGGG
259 CATTCCCAGTCTAAGATCGGATC-AGACCGAGGGTTACAGCAACAAGATCGGTAGCACACAGGGG
* * * *
1368325 GGACCGAACCGATCCCC-AGCCTGCGCATTTTGTCTCTGC-AGTAGGA-TGAGCACCCGCACGCC
323 GGACCGAACCGATCCCCGA-CCTACACATTCTGCCTCTGCGA-T-GGACTGAGCACCCGCACGCC
* * * * *
1368387 TGTTTCATGGGTTGGCTTGGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACTGAGGG
385 TATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGA
* * * *
1368452 TTGTGGTAGCGA-A-ATCGACAGCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTAT
450 TTGT--CA-CAATAGACCAACAGCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTAT
* *
1368515 GCCTTTCCAGCCT-GCTCAGTGCCCAAACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTC
512 GCCTTTCC-GCCTGGCTCAGTGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTC
* * *
1368579 ATTCC-CAGTCTAAGATCGGATTGGACCGAGGGTTGCAGCAGCAAGATTGATAGCACG-AAGGGG
576 ATTCCAC-GTCTAAGATCGGATTGGAACGAGGGTTGCAGCAGCAAGATTGACAACACGCAAGGGG
* * * **
1368642 GGATCGGGCCGGTCC-CTGGCTTGCGCATTCTA-CTCTCCAGCC-AGTTGAGTGCCCGTACGCTC
640 GGATCGGGCCGGTCCTC-GGCTTGCACATTCTACCTCCCCAGCCGA-TTGAATGCCCACACGCTC
* * * * * *
1368704 ATTTCGTGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTGTAATCATACGGAGTTTATTCCAT
703 ATTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGCTCATT-CAT
* * ** *
1368769 -GTGTAAGATCAGA-CTGGACCAAGGGTT-GTAGC-AG-CA-A-GATCGACAGCACGTAGGGGGG
767 AGTCTAAGATCAGATC-GGACCAAGCGTTAGTAGCAAGCCACAGGATCGACAGCACACAAGGGGG
** * * *
1368827 ATCGGGCTAATCC-CTCGCTTACGCATTCTGCCTCTCAGGTCGAC
831 ATCGGGCTAATCCAC-AACTTACACATTCTACCTCTCAGGCCGAC
* ** *
1368871 TGAGCGCCCGTACGCTCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATCCC
1 TGAGCACCCCCACGCTCGTATCGTGGGTTAG-CTTAGGCATACGGAGTTCATCCC
1368925 CAGTCTAAGC
Statistics
Matches: 774, Mismatches: 131, Indels: 48
0.81 0.14 0.05
Matches are distributed among these distances:
867 2 0.00
868 96 0.12
869 1 0.00
873 2 0.00
876 2 0.00
877 5 0.01
879 2 0.00
880 98 0.13
881 40 0.05
882 516 0.67
883 6 0.01
884 2 0.00
885 2 0.00
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (874 bp):
TGAGCACCCCCACGCTCGTATCGTGGGTTAGCTTAGGCATACGGAGTTCATCCCATCTGTAAACC
CCAGTCGGACCGAGGGTTGTGGCAGCAGGACCGACAGCGAGATCAGCAGCATGCAGAAGGGGATC
AGGCTAATCCCCAGCTTGGGCATTATGCCTCTCCAACCAACCTATCTGACAAGCTGAGCGCCCAC
ACGCTCGTTTCATGGGTTGACTTAGGCTTAAGGAGTTCATCCCCAATCTAAGCATACAGAGTTCA
TTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACAGCAACAAGATCGGTAGCACACAGGGGGGA
CCGAACCGATCCCCGACCTACACATTCTGCCTCTGCGATGGACTGAGCACCCGCACGCCTATTTC
ATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCAGACCGAGGATTGTCA
CAATAGACCAACAGCACGCAGAGGGGGACCAGGTCGATCCCCGGCTTGCGCATTATGCCTTTCCG
CCTGGCTCAGTGCCCAAACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCACGTC
TAAGATCGGATTGGAACGAGGGTTGCAGCAGCAAGATTGACAACACGCAAGGGGGGATCGGGCCG
GTCCTCGGCTTGCACATTCTACCTCCCCAGCCGATTGAATGCCCACACGCTCATTTCGTGGGTTG
GCTTAGGCATACAGAGTTCATTCCATGTCTAAGCATACAGAGCTCATTCATAGTCTAAGATCAGA
TCGGACCAAGCGTTAGTAGCAAGCCACAGGATCGACAGCACACAAGGGGGATCGGGCTAATCCAC
AACTTACACATTCTACCTCTCAGGCCGAC
Found at i:1368962 original size:184 final size:182
Alignment explanation
Indices: 1368566--1369144 Score: 610
Period size: 184 Copynumber: 3.2 Consensus size: 182
1368556 GTTGACTTAG
* * *
1368566 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCAGCAGCAAGATTGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAAGATCGATA
* ** * * * * *
1368631 GCACGAAGGGGGGATCGGGCCGGTCCCTGGCTTGCGCATTCTACTCTCCA-GCCAGTTGAGTGCC
66 GCACGTAGGGGGGATCGGGCCAATCCCTCGCTTACGCATTCTCCTCT-CAGGCGA-CTGAGTGCC
* * *
1368695 CGTACGCTCATTTCGTGGGTTGGCTTAGGCATACAGAGTTTATTCCATGTGTAA
129 CGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
* * * * * *
1368749 TCATACGGAGTTTATT-CCATGTGTAAGATCAGACTGGACCAAGGGTTGTAGCAGCAAGATCGAC
1 GCATACGGAGTTCATTCCCA-GTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAAGATCGAT
* *
1368813 AGCACGTAGGGGGGATCGGGCTAATCCCTCGCTTACGCATTCTGCCTCTCAGGTCGACTGAGCGC
65 AGCACGTAGGGGGGATCGGGCCAATCCCTCGCTTACGCATTCT-CCTCTCAGG-CGACTGAGTGC
* * *
1368878 CCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCA-GTCTAA
128 CCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCAT-TCCATGTCTAA
* * * * * * * *
1368933 GCATTCGAAGTTCATTCCCAGTCTAAGATCTA-ACCGAATCGAGGGTTGCGGTAGCAGGATCGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACTGGACCGAGGGTTGCAGCAGCAAGATCGAT
* * * * * * *
1368997 AGTACGTAGGGTGGATCGAGCCAATCCC-CGACTTACACATTCTACCTCTCTGACCGGCTGAGTG
65 AGCACGTAGGGGGGATCGGGCCAATCCCTCG-CTTACGCATTCT-CCTCTCAG-GCGACTGAGTG
* * * * * *
1369061 CCTGCACACCCGTTTCATGGGTTGGCTTAGGCATATAGAGTTCATTCCATGTCTAA
127 CCCGTACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
*
1369117 GCATACGGAGTTCATTTCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
1369145 GTTTGAGCCA
Statistics
Matches: 325, Mismatches: 61, Indels: 19
0.80 0.15 0.05
Matches are distributed among these distances:
182 3 0.01
183 95 0.29
184 218 0.67
185 9 0.03
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (182 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAAGATCGATA
GCACGTAGGGGGGATCGGGCCAATCCCTCGCTTACGCATTCTCCTCTCAGGCGACTGAGTGCCCG
TACGCTCGTTTCGTGGGTTGGCTTAGGCATACAGAGTTCATTCCATGTCTAA
Found at i:1369121 original size:26 final size:26
Alignment explanation
Indices: 1369091--1369143 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1369081 GTTGGCTTAG
*
1369091 GCATATAGAGTTCA-TTCCATGTCTAA
1 GCATACAGAGTTCATTTCCA-GTCTAA
*
1369117 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
1369143 G
1 G
1369144 AGTTTGAGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:1369361 original size:13 final size:12
Alignment explanation
Indices: 1369326--1369357 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
1369316 GTGCTGGTAC
*
1369326 TTGGCCCTTATA
1 TTGGCCCCTATA
1369338 TTGGCCCCTATA
1 TTGGCCCCTATA
1369350 TTGGCCCC
1 TTGGCCCC
1369358 CTATCCCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.34, G:0.19, T:0.34
Consensus pattern (12 bp):
TTGGCCCCTATA
Found at i:1369870 original size:26 final size:26
Alignment explanation
Indices: 1369834--1369886 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1369824 CTTGACTTAG
* **
1369834 GCATACGAAGTTTGTCCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
*
1369860 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATCCCCAGTCTAA
1369886 G
1 G
1369887 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAAAGTTCATCCCCAGTCTAA
Found at i:1371020 original size:368 final size:355
Alignment explanation
Indices: 1370172--1371084 Score: 934
Period size: 355 Copynumber: 2.5 Consensus size: 355
1370162 GTTGACTTAG
* * * * ** * * *
1370172 GCATACGGGGTTCATTCCTAGTCTAAGATCGGATCGAACCGAGGGTTGTGGCAATAGGATCGATA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTGCGACAGCACGATCAACA
* * * *** * ** * * ** *
1370237 GCACACAGGGAGGATCGGGCCGGTCCCCGACTTTTACATTCTACCTCTTCGA-TCGAATGAGTGC
66 GCACGCAGGGGGGACCGGGCTAATCCCCGACCTGCACATTCTGCCTCTCCGACT-GGCTGAGCGC
* * * * * **
1370301 CCGTACGCTCGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAACCCCAGTCG
130 CCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCG
* * * *** * *
1370366 GACTGAGGGTTGTGGTAGCAGGACCGGCAGCGGGATCGGTAGCATACAGAGGGGGACCGGGTTGA
195 AACTGAGGGTTGTGGTAGCAGGACCGACAGCGAGATCAACAGCACACAGAGGGGGACCGAGTTGA
* * * * *
1370431 TCCCCGGCTTACGCATTATGCCTTTTCGGTCGGTTGAGCACCCATACGCTCATTTCGTTGGTTGA
260 TCCCCGGCTTACGCATTATGCCTTTTCGGTCGGTTGAACACCCACACACTCATTTCATGGGTTGA
** *
1370496 CTTAGGCATACGGAGTTCATCCCCAGTCGAA
325 CTTAGGCATACAAAGTTCATCCCCAATCGAA
* *
1370527 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTGCGACAGTAGGATCAACA
1 GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTGCGACAGCACGATCAACA
** ** *
1370592 GCACGCAGGGGGGACCGGGCTGGTCCCCGACCTGCGTATTCTGCCTCTCCGACTGGCTGAGTGCC
66 GCACGCAGGGGGGACCGGGCTAATCCCCGACCTGCACATTCTGCCTCTCCGACTGGCTGAGCGCC
* **
1370657 TGCACGCCCATTTTGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGA
131 CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGA
*
1370722 ACTGAGGGTTGTGGTAGCAGGATCGACAGCGAGATCAACAGCACACAGAGGGGGACCGAGTTGAT
196 ACTGAGGGTTGTGGTAGCAGGACCGACAGCGAGATCAACAGCACACAGAGGGGGACCGAGTTGAT
** * *
1370787 CCCCGGCTTGTGCATTATGCCTCTCCTACCGGCCTCTGCGGTCGGTTGAACACCCACGCACTCGT
261 CCCCGGCTTACGCATTATG-C-CT--T-------T-T-CGGTCGGTTGAACACCCACACACTCAT
* *
1370852 TTCATGGGTTGACTTAGGCATACAAAGTTTATCCCCAATCTAA
313 TTCATGGGTTGACTTAGGCATACAAAGTTCATCCCCAATCGAA
* * *
1370895 GCATACGGATTTCATT-CTGAGTCTAAGATC-GGTCTGAACCGAGGGTTGCGACAGCACGATCGA
1 GCATACGGAGTTCATTCCT-AGTCTAAGATCAGATC-GAACCGAGGGTTGCGACAGCACGATCAA
* * * * ** * * * *
1370958 CAGCATGTAGGGGGGATCGGGTTAATCTTCGGCTTGCACATTCTGCCTCTCTG-GTCGGCTGAGC
64 CAGCACGCAGGGGGGACCGGGCTAATCCCCGACCTGCACATTCTGCCTCTCCGACT-GGCTGAGC
* * *
1371022 GCCCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
128 GCCCGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCA
1371085 GCCGGACCAA
Statistics
Matches: 462, Mismatches: 79, Indels: 21
0.82 0.14 0.04
Matches are distributed among these distances:
355 236 0.51
356 2 0.00
357 2 0.00
359 1 0.00
366 1 0.00
367 7 0.02
368 213 0.46
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.25
Consensus pattern (355 bp):
GCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGAACCGAGGGTTGCGACAGCACGATCAACA
GCACGCAGGGGGGACCGGGCTAATCCCCGACCTGCACATTCTGCCTCTCCGACTGGCTGAGCGCC
CGCACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAACCGA
ACTGAGGGTTGTGGTAGCAGGACCGACAGCGAGATCAACAGCACACAGAGGGGGACCGAGTTGAT
CCCCGGCTTACGCATTATGCCTTTTCGGTCGGTTGAACACCCACACACTCATTTCATGGGTTGAC
TTAGGCATACAAAGTTCATCCCCAATCGAA
Found at i:1371224 original size:159 final size:158
Alignment explanation
Indices: 1371033--1371397 Score: 392
Period size: 158 Copynumber: 2.3 Consensus size: 158
1371023 CCCGTATGCC
* * *
1371033 CGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCAAGGG
* ** * * * *
1371098 TTATGGCAGCGGGA-CTGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTATG
66 TTATGGCAGCAGGATC-GACAGCACCCAG-GGGGGACCAGGCCGATCCCCGACTTACACATTATA
* * * *
1371162 CCTCTTCAATCGGCTCAGCACTCGCACGCT
129 CCTCTCCAATCAGCTCAGCACCCGCACACT
* * * ** ** * *
1371192 CGTTTCATGGTTTGACTTATGCATACAAAGTTCATTCCCA-GTCTAAGATCAAATCGGACCGAGG
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTAAGCCCAAACCGGACCAAGG
* * * * * *
1371256 GTTGTGGCAGCAGGATCGACAGCACCCAGGGGGGACCAGGTCGATCCTCGGCTTACGCATTCTAC
65 GTTATGGCAGCAGGATCGACAGCACCCAGGGGGGACCAGGCCGATCCCCGACTTACACATTATAC
* * * *
1371321 CTCTCCGATCAGTTGAGCGCCCGCACACT
130 CTCTCCAATCAGCTCAGCACCCGCACACT
1371350 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1 CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
1371398 ATATGGAGTT
Statistics
Matches: 164, Mismatches: 39, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
157 3 0.02
158 87 0.53
159 70 0.43
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.24
Consensus pattern (158 bp):
CGTTTCATGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCCCAAACCGGACCAAGGG
TTATGGCAGCAGGATCGACAGCACCCAGGGGGGACCAGGCCGATCCCCGACTTACACATTATACC
TCTCCAATCAGCTCAGCACCCGCACACT
Found at i:1371375 original size:158 final size:158
Alignment explanation
Indices: 1370932--1371396 Score: 466
Period size: 159 Copynumber: 2.9 Consensus size: 158
1370922 ATCGGTCTGA
* * * * * * ** *
1370932 ACCGAGGGTTGCGACAGCACGATCGACAGCATGTAGGGGGGATCGGGTTAATCTTCGGCTTGCAC
1 ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCAC
* * * * * *
1370997 ATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTATGCCCGTTTCATGGGTTGGCTTAGGCATAGGGA
66 ATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
* * *
1371062 GTTCATTCCATGTCTAAGCCCCAGCCGG
131 GTTCATTCCATGTCTAAGACCAAACCGG
* * * ** * * *
1371090 ACCAAGGGTTATGGCAGCGGGA-CTGGTAGCACGCAGAGGGGGACCGGGCCGATCCCCGACTTGC
1 ACCGAGGGTTGTGGCAGCAGGATC-GACAGCACGCAG-GGGGGACCGGGTCGATCCTCGGCTTGC
* * * * * * * * * *
1371154 ACATTATGCCTCTTCAATCGGCTCAGCACTCGCACGCTCGTTTCATGGTTTGACTTATGCATACA
64 ACATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACG
* * *
1371219 AAGTTCATTCCCA-GTCTAAGATCAAATCGG
129 GAGTTCATT-CCATGTCTAAGACCAAACCGG
* * * *
1371249 ACCGAGGGTTGTGGCAGCAGGATCGACAGCACCCAGGGGGGACCAGGTCGATCCTCGGCTTACGC
1 ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCAC
* * * *
1371314 ATTCTACCTCTCCGATCAGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGA
66 ATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
1371379 GTTCATTCCATGTCTAAG
131 GTTCATTCCATGTCTAAG
1371397 CATATGGAGT
Statistics
Matches: 236, Mismatches: 66, Indels: 10
0.76 0.21 0.03
Matches are distributed among these distances:
157 4 0.02
158 111 0.47
159 117 0.50
160 4 0.02
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (158 bp):
ACCGAGGGTTGTGGCAGCAGGATCGACAGCACGCAGGGGGGACCGGGTCGATCCTCGGCTTGCAC
ATTCTGCCTCTCCGATCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGGCTTAGGCATACGGA
GTTCATTCCATGTCTAAGACCAAACCGG
Found at i:1371400 original size:26 final size:26
Alignment explanation
Indices: 1371370--1371422 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1371360 GTTGGCTTAG
1371370 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTACCA-GTCTAA
*
1371396 GCATATGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCATTACCAGTCTAA
1371422 G
1 G
1371423 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTACCAGTCTAA
Found at i:1371637 original size:514 final size:513
Alignment explanation
Indices: 1370989--1371935 Score: 1380
Period size: 514 Copynumber: 1.8 Consensus size: 513
1370979 TTAATCTTCG
* * * * * *
1370989 GCTTGCACATTCTGCCTCTCTGGTCGGCTGAGCGCCCGTATGCCCGTTTCATGGGTTGGCTTAGG
1 GCTTGCACATTCTACCTCTCCGCTCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
* * *
1371054 CATAGGGAGTTCATTCCATGTCTAAGCCCCAGCCGGACCAAGGGTTATGGCAGCGGGACTGGTAG
66 CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTATGGCAGCGGGACTGGCAG
* * *
1371119 CACGCAGAGGGGGACCGGGCCGATCCCCGACTTGCACATTATGCCTCTTCAATCGGCTCAGCA-C
131 CACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTCCAACCGGCTCAGCACC
* * *
1371183 TCGCACGCTCGTTTCATGGTTTGACTTATGCATACAAAGTTCATTCCCAGTCTAAGATCAAATCG
196 T-GCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCG
* * *
1371248 GACCGAGGGTTGTGG-CAGCAGGATCGACAGCACCCAGGGGGGACCAGG-TCGAT-CCTCGGCTT
260 GACCGAGGGTTGCGGTCA-CAGGATCAACAGCACCCAGGGGGGACCGGGCT-GATCCCT-GGCTT
1371310 ACGCATTCTACCTCTCCGATCAGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATA
322 ACGCATTCT-CCTCTCCGATCAGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATA
*
1371375 CGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTACCAGTCTAAGATCAGACTGGACCAAAG
386 CGGAGTTCATTCCATGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATCAGACTGGACCAAAG
1371440 GTTACGATCGTAGGACTAGTAGTAGGATTGGCAGCACGCAGGGGAGGATTGGGCCGATCCCCA
451 GTTACGATCGTAGGACTAGTAGTAGGATTGGCAGCACGCAGGGGAGGATTGGGCCGATCCCCA
* * *
1371503 GCTTGCACATTCTACCTCTCCGCTCGACTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGG
1 GCTTGCACATTCTACCTCTCCGCTCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
** * *
1371568 CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACTGAGGGTTGTGGTAGCGGGACTGGCAG
66 CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTATGGCAGCGGGACTGGCAG
* * * ** * *
1371633 CACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCCGGCTTAGCGCC
131 CACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTCCAACCGGCTCAGCACC
* * * * * *
1371698 TGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAATATCAGACCGG
196 TGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCGG
* * * *
1371763 ACCGAGGGTTGCGGTCATAGGATCAACAGCACGCAGGGGGGATCGGGCTGATCCCTGGCTTGCGC
261 ACCGAGGGTTGCGGTCACAGGATCAACAGCACCCAGGGGGGACCGGGCTGATCCCTGGCTTACGC
* * * * *
1371828 ATTCTGCTCTCCGATCGGTTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAG
326 ATTCTCCTCTCCGATCAGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAG
*
1371893 TTCATTCCATGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
391 TTCATTCCATGTCTAAGCATACGGAGTTCATTACCAGTCTAAG
1371936 CATACGAAGT
Statistics
Matches: 380, Mismatches: 49, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
513 96 0.25
514 276 0.73
515 8 0.02
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.24
Consensus pattern (513 bp):
GCTTGCACATTCTACCTCTCCGCTCGACTGAGCGCCCGCACGCCCGTTTCATGGGTTGGCTTAGG
CATACGGAGTTCATTCCATGTCTAAGCCCCAACCGGACCAAGGGTTATGGCAGCGGGACTGGCAG
CACGCAGAGGGGGACCAGGCCGATCCCCGACTTGCACATTATGCCTCTCCAACCGGCTCAGCACC
TGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAAACCGG
ACCGAGGGTTGCGGTCACAGGATCAACAGCACCCAGGGGGGACCGGGCTGATCCCTGGCTTACGC
ATTCTCCTCTCCGATCAGTTGAGCGCCCGCACACTCGTTTCATGGGTTGGCTTAGGCATACGGAG
TTCATTCCATGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATCAGACTGGACCAAAGGTTAC
GATCGTAGGACTAGTAGTAGGATTGGCAGCACGCAGGGGAGGATTGGGCCGATCCCCA
Found at i:1371762 original size:159 final size:157
Alignment explanation
Indices: 1371463--1371911 Score: 505
Period size: 159 Copynumber: 2.8 Consensus size: 157
1371453 GACTAGTAGT
* ** * *
1371463 AGGATTGGCAGCACGCAGGGGAGGATTGGGCCGATCCCCAGCTTGCACATTCTACCTCTCC-GCT
1 AGGA-TGGCAGCACGCAGGGG-GGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGC-
* * *
1371527 CGACTGAGCTCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
63 CGGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTA
* * *
1371592 AGCCCCAACCGGACTGAGGGTTGTGGT-AGC
128 AGCACCAACCGGACCGAGGGTTGCGGTCA-C
* * * *
1371622 GGGACTGGCAGCACGCAGAGGGGGACCAGGCCGATCCCTGGCTTGCGCATTATGCCTCTCCGGCC
1 AGGA-TGGCAGCACGCAG-GGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCC
* * * * *
1371687 GGCTTAGCGCCTGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCA-GTCTA
64 GGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATT-CCATGTCTA
* * *
1371751 A-TATCAGACCGGACCGAGGGTTGCGGTCAT
128 AGCACCA-ACCGGACCGAGGGTTGCGGTCAC
** * **
1371781 AGGATCAACAGCACGCAGGGGGGATCGGGCTGATCCCTGGCTTGCGCATTCTG-CTCTCCGATCG
1 AGGAT-GGCAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCG
*
1371845 G-TTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
65 GCTT-AGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAA
1371909 GCA
129 GCA
1371912 TACGGAGTTC
Statistics
Matches: 241, Mismatches: 40, Indels: 19
0.80 0.13 0.06
Matches are distributed among these distances:
156 5 0.02
157 60 0.25
158 35 0.15
159 132 0.55
160 9 0.04
ACGTcount: A:0.17, C:0.28, G:0.31, T:0.24
Consensus pattern (157 bp):
AGGATGGCAGCACGCAGGGGGGATCGGGCCGATCCCTGGCTTGCGCATTCTGCCTCTCCGGCCGG
CTTAGCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGC
ACCAACCGGACCGAGGGTTGCGGTCAC
Found at i:1371919 original size:26 final size:25
Alignment explanation
Indices: 1371883--1371961 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
1371873 GTTGGCTTAG
1371883 GCATACGGAGTTCATTCCATGTCTAA
1 GCATACGGAGTTCATTCCA-GTCTAA
1371909 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATT-CCAGTCTAA
*
1371935 GCATACGAAGTTCATTCCGAGTCTAA
1 GCATACGGAGTTCATTCC-AGTCTAA
1371961 G
1 G
1371962 ATCAAACCGG
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 2 0.04
26 45 0.90
27 3 0.06
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:1372134 original size:26 final size:26
Alignment explanation
Indices: 1372105--1372157 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1372095 GTTGGCTTAG
1372105 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
1372131 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1372157 G
1 G
1372158 ATTTTCTACC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1373341 original size:159 final size:159
Alignment explanation
Indices: 1372768--1373343 Score: 515
Period size: 159 Copynumber: 3.6 Consensus size: 159
1372758 CCACCCGTTT
* * * * * * *
1372768 GATCCCCGACTTGCGCATCTTGCCTCTCTGGTCGGCTGAGCGCCCGCACGCTTA--TTTTATGGG
1 GATCCCCGGCTTGAGCATCATGCCTCTCCGATCGACTGAGCGCCCGCACGC-TACGTTTCATGGG
* * * * * **
1372831 TTGACTTAGGCATACAGAGTTCATTCACA-GTCTAAG--ATAGTACCAGACCAAGAGTTGTGATA
65 TTGACTTAGGCATACGGAGTTCA-TCCCATGTCTAAGCCCTAGT--CAGACCGAGGGTTGTGGCA
* *
1372893 GCAGGATCGACAGCACGTAGAGGGGATCGGGCC
127 GCAGGATCGACAGCACGAAGAGGGGACCGGGCC
** * * * ** * * * **
1372926 GATCCCCGGCTT-ATGCATTTTACCTGTCCGACCGGTTGAGTGCCCGTACGC-CCGTTTTGTGGG
1 GATCCCCGGCTTGA-GCATCATGCCTCTCCGATCGACTGAGCGCCCGCACGCTACGTTTCATGGG
* * * * * *
1372989 TTGGCTGAGGCATAGGGAGTTCATTCCATGTCTAAACCCTAGTCAGACCGAGGGTTGTGGCAGCG
65 TTGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGGCAGCA
* * *
1373054 GGACCGGCAGCACGAAGAGGAAGACCGGGCC
130 GGATCGACAGCACGAAGAGG-GGACCGGGCC
* * * * * * * * *
1373085 GATCCCTGGCTTGCGCATTATGCCTTTTCGGTCGACTCAGCGCCCGCACGCT-CATTTCGTGGGT
1 GATCCCCGGCTTGAGCATCATGCCTCTCCGATCGACTGAGCGCCCGCACGCTACGTTTCATGGGT
* * * *
1373149 TGACTTAGGCATATGGAGTTCATTCCATATCTAAGCCCCAGTCAGACCGAGGGTTGTGGCAGCAG
66 TGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGGCAGCAG
* *
1373214 GATCGACAGCACGCAGAAGGGGACCGGGCT
131 GATCGACAGCACGAAG-AGGGGACCGGGCC
* *
1373244 GATCCCCGGCTTGAGCATCATGCCTCTCCGATCGACTGAGCACCGGCACG-TACGTTTCATGGGT
1 GATCCCCGGCTTGAGCATCATGCCTCTCCGATCGACTGAGCGCCCGCACGCTACGTTTCATGGGT
*
1373308 TCACTTAGGCATACGGAGTTCATCCCCA-GTCTAAGC
66 TGACTTAGGCATACGGAGTTCAT-CCCATGTCTAAGC
1373344 ATATGGAGTT
Statistics
Matches: 333, Mismatches: 73, Indels: 23
0.78 0.17 0.05
Matches are distributed among these distances:
157 3 0.01
158 107 0.32
159 213 0.64
160 10 0.03
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.23
Consensus pattern (159 bp):
GATCCCCGGCTTGAGCATCATGCCTCTCCGATCGACTGAGCGCCCGCACGCTACGTTTCATGGGT
TGACTTAGGCATACGGAGTTCATCCCATGTCTAAGCCCTAGTCAGACCGAGGGTTGTGGCAGCAG
GATCGACAGCACGAAGAGGGGACCGGGCC
Found at i:1373346 original size:26 final size:26
Alignment explanation
Indices: 1373316--1373368 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1373306 GTTCACTTAG
1373316 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
* *
1373342 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1373368 G
1 G
1373369 ATAAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1373828 original size:26 final size:26
Alignment explanation
Indices: 1373798--1373853 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
1373788 TGGGTTGGCT
* *
1373798 TAAGCATATGGAGTTCATT-CCATGTC
1 TAAGCATATGAAGGTCATTCCCA-GTC
1373824 TAAGCATATGAAGGTCATTCCCAGTC
1 TAAGCATATGAAGGTCATTCCCAGTC
1373850 TAAG
1 TAAG
1373854 ATTTTGACCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 24 0.89
27 3 0.11
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATATGAAGGTCATTCCCAGTC
Found at i:1374737 original size:26 final size:26
Alignment explanation
Indices: 1374701--1374753 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1374691 GTTGGCATAG
*
1374701 GCATAGGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
1374727 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1374753 G
1 G
1374754 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1375653 original size:184 final size:192
Alignment explanation
Indices: 1375459--1375846 Score: 510
Period size: 196 Copynumber: 2.0 Consensus size: 192
1375449 TTTATCCCCA
* * * *
1375459 GTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGT-G-GC-A-A-
1 GTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGAGCAAGAC
*
1375519 C-A-A-GATCAACAGCACGCAGGGGGGATC-AGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-T
66 CAACAGGATCAACAGCACGCAGGGGGGA-CGAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCT
*
1375579 CGG-CTGCCTGAGCACCCGCACCCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
130 -GGTC-GCCTGAGCACCCACACCCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
*
1375643 GTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAGCAAGA
1 GTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGG-AGCAAGA
* * * *
1375708 CCAACAGTGGGATCGATAGCACGCAGGGGGGACGGGGCCGATCCCCGGCTTGTGCATTCTACCTC
65 CCAACA---GGATCAACAGCACGCAGGGGGGACGAGGCCGATCCCCGGCTTGCGCATTCTACCTC
* *
1375773 TCTGGTCGGCTGAGCACCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
127 TCTGGTCGCCTGAGCACCCACACCCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
1375838 T
192 T
*
1375839 GTTTAAGC
1 GTCTAAGC
1375847 CCCAGCCGGA
Statistics
Matches: 175, Mismatches: 14, Indels: 18
0.85 0.07 0.09
Matches are distributed among these distances:
184 50 0.29
185 1 0.01
187 2 0.01
188 1 0.01
189 1 0.01
190 1 0.01
191 1 0.01
192 1 0.01
195 1 0.01
196 114 0.65
197 2 0.01
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.23
Consensus pattern (192 bp):
GTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGAGCAAGAC
CAACAGGATCAACAGCACGCAGGGGGGACGAGGCCGATCCCCGGCTTGCGCATTCTACCTCTCTG
GTCGCCTGAGCACCCACACCCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCAT
Found at i:1376228 original size:922 final size:922
Alignment explanation
Indices: 1374480--1376387 Score: 2761
Period size: 922 Copynumber: 2.1 Consensus size: 922
1374470 CTCTGGTCAG
* * * * *
1374480 CTGAGGGCCTGTACGCTCATTTCATGGGTTGACTTAGACATACAGAATTCATCCCCAGTCTAAGC
1 CTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
* * * * * *
1374545 ATATGGAGTTCATTCCCAATCTAAGACCGGACCGGACAGAGGGTTGCGATAGCAGGATCGACAGC
66 ATACGAAGTTCATTCCCAATCTAAGACCGGACCGGACAGAGGGTTGCGACAACAAGATCAACAGC
* * * * * * **
1374610 ATGTAGGGGTGACCGGGCTGATCCCCGGCTTGCACTTTATGCCTCTCTGGTCGGTTGAGCACCCG
131 ACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTCTGGTCGCCTGAGCACCCG
* **
1374675 CACACCCATTTCGTGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCATACGGAGTTC
196 CACACCCATTTCATGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAAAGTTC
* * * *
1374740 ATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGTGGTAGCAGGACCGACAGCGGGATCGATAG
261 ATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAAGACCAACAGCGGGATCGATAG
* * **
1374805 CACGCAAGGGGGATCGAGCCGATCCCCGACTTGTGCATTCTGCCTCTCCGGCCGGTTGAGTGCCC
326 CACGCAAGGGGGATCGAGCCGATCCCCGACTTGTGCATTCTACCTCTCCGGCCGGCTGAGCACCC
* * *
1374870 ACACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAACCCCAACTGGG
391 ACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAACCCCAACCGGA
* * ** * * *
1374935 CTGCGGGTTGGGGCACCATTGCCGAAGCATCACTGGAGCATCGTTGGAGAGCCTAATCGACGGCA
456 CCGAGGGTTGGGGCACCATCACCGAAGCATCACTGGAGCATCGTTGGAGAGCCAAACCGACGACA
* *
1375000 TTGGGGGTTCCGACGATTGGCGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
521 TTGGGGGTTCCGACGATTGGCAGGCCAGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
1375065 TTGGCCCTTATATTGGCCCCCTATCACTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
586 TTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
*
1375130 TTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
651 TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
1375195 AACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACACGCC
716 AACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACACGCC
* * * * *
1375260 CGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCCCTAGCCGGACTGAAGG
781 CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAAGG
**
1375325 TTGTGACAGCGGGATC-CGCAGCACGTTGTGGGGGATCGGGCCGATCCCCGACTTACGCATTATG
846 TTGTGACAGCGGGATCGC-CAGCACGCAGTGGGGGATCGGGCCGATCCCCGACTTACGCATTATG
**
1375389 TGTCTCCGACCGA
910 CCTCTCCGACCGA
* * * *
1375402 CTGAGCGCCTGCACGCTCATTTCGTGAGTTGACTAAGGTATACAGAGTTTATCCCCAGTCTAAGC
1 CTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
* * * * * *
1375467 ATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAACAAGATCAACAGC
66 ATACGAAGTTCATTCCCAATCTAAGACCGGACCGGACAGAGGGTTGCGACAACAAGATCAACAGC
* * *
1375532 ACGCAGGGGGGATCAGGCCGATCCCCGGCTTGCGCATTCTGCCTCT-TCGG-CTGCCTGAGCACC
131 ACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTCT-GGTC-GCCTGAGCACC
* * *
1375595 CGCACCCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAAAGT
194 CGCACACCCATTTCATGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAAAGT
* *
1375660 TCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGGTAGCAAGACCAACAGTGGGATCGAT
259 TCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAAGACCAACAGCGGGATCGAT
* * * * *
1375725 AGCACGCAGGGGGGA-CGGGGCCGATCCCCGGCTTGTGCATTCTACCTCTCTGGTCGGCTGAGCA
324 AGCACGCAAGGGGGATC-GAGCCGATCCCCGACTTGTGCATTCTACCTCTCCGGCCGGCTGAGCA
* * * * *
1375789 CCCACACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATGTTTAAGCCCCAGCC
388 CCCACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAACCCCAACC
* *
1375854 GGACCGAGGGTTGGGGCACCATCACCGGAGCATC-GTCGGAGCATCGTTGGAGAGCCAAACC-AG
453 GGACCGAGGGTTGGGGCACCATCACCGAAGCATCACT-GGAGCATCGTTGGAGAGCCAAACCGA-
* * *
1375917 CGACATTGGGGGTTTCGATGATTGGCAGGCCAGGGGATGTGTGCACATGATGTGCGATGGGTGCT
516 CGACATTGGGGGTTCCGACGATTGGCAGGCCAGGGGATGTGCGCACATGATGTGCGATGGGTGCT
1375982 GGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACC-CTGAGAACTCACACCCCCTTAA
581 GGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTC-GAGAACTCACACCCCCTTAA
*
1376046 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTT
645 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1376111 TTTTCGAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
710 TTTTCAAACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
1376176 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTTATTCCACGTCTAAGCCCCAGCCAGAC
775 CACGCCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCAGAC
* * * * ** *
1376241 CGAGGGTTGTGACAGTGGGATCGCCAGCACGCAGTGGGGGATCGGGCTGATCCTCGGTTTGCGCA
840 CGAAGGTTGTGACAGCGGGATCGCCAGCACGCAGTGGGGGATCGGGCCGATCCCCGACTTACGCA
*
1376306 TTATGCCTCTCCGACCGG
905 TTATGCCTCTCCGACCGA
* * ** * *
1376324 CTCAACG-CTCGCACAATCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CTGAGCGCCT-GCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAG
1376388 ATCAAACCAG
Statistics
Matches: 871, Mismatches: 107, Indels: 16
0.88 0.11 0.02
Matches are distributed among these distances:
921 8 0.01
922 862 0.99
923 1 0.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.25
Consensus pattern (922 bp):
CTGAGCGCCTGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATCCCCAGTCTAAGC
ATACGAAGTTCATTCCCAATCTAAGACCGGACCGGACAGAGGGTTGCGACAACAAGATCAACAGC
ACGCAGGGGGGACCAGGCCGATCCCCGGCTTGCACATTATGCCTCTCTGGTCGCCTGAGCACCCG
CACACCCATTTCATGGGTTGGCATAGGCATAGGGAGTTCATTCCATGTCTAAGCATACAAAGTTC
ATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGTAGCAAGACCAACAGCGGGATCGATAG
CACGCAAGGGGGATCGAGCCGATCCCCGACTTGTGCATTCTACCTCTCCGGCCGGCTGAGCACCC
ACACGCCCATTTCATGGGTTGGCTTAGGCATAGGGAGTTCATTCCATATCTAAACCCCAACCGGA
CCGAGGGTTGGGGCACCATCACCGAAGCATCACTGGAGCATCGTTGGAGAGCCAAACCGACGACA
TTGGGGGTTCCGACGATTGGCAGGCCAGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AACGGTCACAAAATCTTCTCCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACACGCC
CATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCACGTCTAAGCCCCAGCCAGACCGAAGG
TTGTGACAGCGGGATCGCCAGCACGCAGTGGGGGATCGGGCCGATCCCCGACTTACGCATTATGC
CTCTCCGACCGA
Found at i:1376642 original size:22 final size:22
Alignment explanation
Indices: 1376614--1376668 Score: 92
Period size: 22 Copynumber: 2.5 Consensus size: 22
1376604 CCCGGGGCAC
*
1376614 CATCGTCGGAGCATCACTGGAG
1 CATCGTCGGAGCATCACCGGAG
*
1376636 CATCGTCGGAGCATCGCCGGAG
1 CATCGTCGGAGCATCACCGGAG
1376658 CATCGTCGGAG
1 CATCGTCGGAG
1376669 AGCCTAATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.20, C:0.29, G:0.35, T:0.16
Consensus pattern (22 bp):
CATCGTCGGAGCATCACCGGAG
Found at i:1376662 original size:11 final size:11
Alignment explanation
Indices: 1376614--1376668 Score: 76
Period size: 11 Copynumber: 5.0 Consensus size: 11
1376604 CCCGGGGCAC
1376614 CATCGTCGGAG
1 CATCGTCGGAG
*
1376625 CATC-ACTGGAG
1 CATCGTC-GGAG
1376636 CATCGTCGGAG
1 CATCGTCGGAG
*
1376647 CATCGCCGGAG
1 CATCGTCGGAG
1376658 CATCGTCGGAG
1 CATCGTCGGAG
1376669 AGCCTAATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
10 1 0.03
11 36 0.95
12 1 0.03
ACGTcount: A:0.20, C:0.29, G:0.35, T:0.16
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:1377285 original size:26 final size:26
Alignment explanation
Indices: 1377249--1377299 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1377239 TGACTTAGGC
*
1377249 ATACGGAGTTCATCCCCAGTCTAAGT
1 ATACGGAGTTCATCCCCAGTATAAGT
*
1377275 ATACGGAGTTCATTCCCAGTATAAG
1 ATACGGAGTTCATCCCCAGTATAAG
1377300 ATTGAACTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATCCCCAGTATAAGT
Found at i:1377728 original size:158 final size:157
Alignment explanation
Indices: 1377275--1377764 Score: 472
Period size: 159 Copynumber: 3.1 Consensus size: 157
1377265 CAGTCTAAGT
* * *
1377275 ATACGGAGTTCATTCCCAGTATAAGAT-TGAACTAGACCGAGGGTTGCGACAGCAGGATCGGCAG
1 ATACGGAGTTCATTCCCAGTCTAAGATCCGAAC-GGACCGAGGGTTGCGACAGCAGGATCGGCAG
* * * *
1377339 CACGCA-GGGGGACCAGGTCGATCCCTGGCTTGTACGT-TTTGCCTCTCCGGCCGGCTGAGCGCC
65 CACACAGGGGGGACCGGGTCGATCCCTGAC-T-TACGTATTTGCCTCTTCGGCCGGCTGAGCGCC
* * *
1377402 CGCACGCCCATTT-AGTGGGTTAACTTAGGC
128 CGCACGCTCGTTTCA-TGGGTTGACTTAGGC
* * * * * * * * * * * *
1377432 ATAGGGATTTCATT-CTATGCCTAAG-CCCTAGCCGAACCGAGGGTTGTGGCAGCGGGA-CTGGT
1 ATACGGAGTTCATTCCCA-GTCTAAGATCCGA-ACGGACCGAGGGTTGCGACAGCAGGATC-GGC
* * * * * *
1377494 AGCACACAGAGGGAGATCGGGTCGATCCTTGACTTACGCATTATGCCTCTTCGGCCGGCTCAGTG
63 AGCACACAG-GGGGGACCGGGTCGATCCCTGACTTACGTATT-TGCCTCTTCGGCCGGCTGAGCG
1377559 CCCGCACGCTCGTTTCATGGGTTGACTTAGGC
126 CCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * * * * *
1377591 GTATGAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCTGGATCGACAGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCCGAACGGACCGAGGGTTGCGACAGCAGGATCGGCAGC
* * *
1377656 ACATAGGGGGGACCGGGCCGATCCCTGACTTACGTATTCTGCCTCTTCGGTCGGCTGAGCGCCCG
66 ACACAGGGGGGACCGGGTCGATCCCTGACTTACGTATT-TGCCTCTTCGGCCGGCTGAGCGCCCG
* * *
1377721 CTCGCTCGTTTCGTGGGTTGGCTTAGGC
130 CACGCTCGTTTCATGGGTTGACTTAGGC
1377749 ATACGGAGTTCATTCC
1 ATACGGAGTTCATTCC
1377765 ATGTTTAAGC
Statistics
Matches: 261, Mismatches: 60, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
156 3 0.01
157 50 0.19
158 92 0.35
159 110 0.42
160 6 0.02
ACGTcount: A:0.19, C:0.27, G:0.31, T:0.24
Consensus pattern (157 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCCGAACGGACCGAGGGTTGCGACAGCAGGATCGGCAGC
ACACAGGGGGGACCGGGTCGATCCCTGACTTACGTATTTGCCTCTTCGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGC
Found at i:1377784 original size:26 final size:26
Alignment explanation
Indices: 1377747--1377799 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1377737 GTTGGCTTAG
* *
1377747 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGAAGTTCATTCCATGTCTAA
*
1377773 GCATACGAAGTTCATTCCCTGTCTAA
1 GCATACGAAGTTCATTCCATGTCTAA
1377799 G
1 G
1377800 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCATGTCTAA
Found at i:1377920 original size:185 final size:184
Alignment explanation
Indices: 1377595--1377947 Score: 480
Period size: 185 Copynumber: 1.9 Consensus size: 184
1377585 TTAGGCGTAT
* *
1377595 GAAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCTGGATCGACAGCACAT
1 GAAGTTCATTCCCAGTCTAAGATCGAATCGGACCAAGGGTTGCGACAGCTGGATCGACAGCACAT
* * * *
1377660 AGGGGGGACCGGGCCGATCCCTGACTTACGTATTCTGCCTCTTCGGTCGGCTGAGCGCCCGCTCG
66 AGGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGCCGAGCGCCCGCTCG
* *
1377725 CTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCATGTTTAAGCATAC
131 CTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTTTAAGCATAC
* * * ** *
1377779 GAAGTTCATTCCCTGTCTAAGATCGAA-CTGGACTAATGGTTGCGGTAG-TAGGATCGGCAGCAC
1 GAAGTTCATTCCCAGTCTAAGATCGAATC-GGACCAAGGGTTGCGACAGCT-GGATCGACAGCAC
* * *
1377842 GTAGGGGGTGACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGCACG-GTGCCCG
64 ATAGGGGG-GACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGC-CGAGCGCCCG
1377906 -TCCGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT
127 CT-CGCTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATT
1377948 TCCAGTCTAA
Statistics
Matches: 147, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
183 2 0.01
184 59 0.40
185 85 0.58
186 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (184 bp):
GAAGTTCATTCCCAGTCTAAGATCGAATCGGACCAAGGGTTGCGACAGCTGGATCGACAGCACAT
AGGGGGGACCGGGCCGATCCCCGACTTACGCATTATGCCTCTTCGGTCGGCCGAGCGCCCGCTCG
CTCATTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTCCATGTTTAAGCATAC
Found at i:1378579 original size:316 final size:314
Alignment explanation
Indices: 1377851--1378582 Score: 771
Period size: 316 Copynumber: 2.3 Consensus size: 314
1377841 CGTAGGGGGT
* * * *
1377851 GACCGGGCCGATCCCCGACTTGCGCATTATGCCTCTTCGGTCGGC-ACGGTGCCCGTC-CGCTCA
1 GACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTT-GGTCGGCTA-AGCGCCCG-CACGCTCG
* * * *
1377914 TTTCGTGGGTTGGCTTAGGCATACGAAGTTCATTTCCAGTCTAAGATCAGATTGGACCGAGGGTT
63 TTTCGTGGGTTGACTTAGGCATAC-AAGTTCA-TTCCAGCCTAAGATCAGACTGCACCGAGGGTT
* * * **
1377979 GCGGCAGCAGGATCGATAGAACACAGGGGGGACTGGGTCAGTCCCCTACCTGTGCATTCTGCCTC
126 GCGGCAGCAGGATCGACAGAACACAGGGGGGACTGGGACAGTCCCCGACCTACGCATTCTGCCTC
* * * *
1378044 TCCGGCCGACTGATCGCCCGCACGCCCGTTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
191 TCCGACCGACTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCA
* * * * *
1378109 TGTCCAAGCCCCAGTCGGACCAAGGGTTGTGGCTGCGGGACCGACAGCATGCAGAGGGG
256 AGTCCAAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGAGACCGACAGCATGAAGAAGGG
*** * * * * *
1378168 GACCATACCGACCCCCAGCTTGCACATTATGCCTCTTTGG-CTGGCTTAGCGCCTGCACGCTCGT
1 GACCGGGCCGATCCCCGGCTTGCGCATTATGCCTC-TTGGTC-GGCTAAGCGCCCGCACGCTCGT
* * * * *
1378232 TTCATGGGTTGATTTAGGTATACGGAGTTCATTCCTAGCCTAAGATCAGACTGCATCGAGGGTTG
64 TTCGTGGGTTGACTTAGGCATAC-AAGTTCATTCC-AGCCTAAGATCAGACTGCACCGAGGGTTG
* * * * *
1378297 CGGTAGCAGGATCGACA-ACACGCA-GGGGGA-TCGGGAC-GATCCTCGGCTTACGCATTCTGCC
127 CGGCAGCAGGATCGACAGA-ACACAGGGGGGACT-GGGACAG-TCCCCGACCTACGCATTCTGCC
* * *
1378358 TCTTCGACCGGCTGAGCGCCCGTACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
189 TCTCCGACCGACTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTC
* * * * * *
1378423 TAAGTCTAAGCCCCAG-CTGGATCGAGGGTTGTGGCAGTGAGACCGATAGC-TCGAAGAAGGG
254 CAAGTCCAAGCCCCAGTC-GGACCAAGGGTTGTGGCAGCGAGACCGACAGCAT-GAAGAAGGG
* * * *
1378484 GATCGGGCTGATCCCTGGCTTGCGCATTATGCCTCTCTGGTCGGCTAAACGCCCGCACGCTCGTT
1 GACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCT-TGGTCGGCTAAGCGCCCGCACGCTCGTT
*
1378549 TCGTGGGTTGACTTAGGCATATATAGTTCATTCC
65 TCGTGGGTTGACTTAGGCATACA-AGTTCATTCC
1378583 CAGTGGGATT
Statistics
Matches: 336, Mismatches: 66, Indels: 27
0.78 0.15 0.06
Matches are distributed among these distances:
315 5 0.01
316 214 0.64
317 115 0.34
318 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (314 bp):
GACCGGGCCGATCCCCGGCTTGCGCATTATGCCTCTTGGTCGGCTAAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACAAGTTCATTCCAGCCTAAGATCAGACTGCACCGAGGGTTGCGGC
AGCAGGATCGACAGAACACAGGGGGGACTGGGACAGTCCCCGACCTACGCATTCTGCCTCTCCGA
CCGACTGAGCGCCCGCACACCCATTTCGTGGGTTGGCTTAGGCATAGGGAGTTCATTCCAAGTCC
AAGCCCCAGTCGGACCAAGGGTTGTGGCAGCGAGACCGACAGCATGAAGAAGGG
Found at i:1378725 original size:26 final size:26
Alignment explanation
Indices: 1378689--1378741 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1378679 GGTTGGCTTG
1378689 GCATACAGAGTTCATTCCATGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
* * *
1378715 GCATACGGAGTTCGTTCCCTGTCTAA
1 GCATACAGAGTTCATTCCATGTCTAA
1378741 G
1 G
1378742 ATCAGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCATGTCTAA
Found at i:1379099 original size:26 final size:26
Alignment explanation
Indices: 1379069--1379120 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1379059 GTTGATTTAG
1379069 GCATACGGAGTTCATCCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* * *
1379095 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1379121 CATCAGACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1379986 original size:26 final size:26
Alignment explanation
Indices: 1379936--1379988 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1379926 GTTGACTTAG
*
1379936 GCATACGGAGTTCATCTCCAGTCTAA
1 GCATACGGAGTTCATCTCCAATCTAA
*
1379962 GCATATGGAGTTCAT-TCCCAATCTAA
1 GCATACGGAGTTCATCT-CCAATCTAA
1379988 G
1 G
1379989 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATCTCCAATCTAA
Found at i:1381209 original size:26 final size:26
Alignment explanation
Indices: 1381159--1381211 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1381149 GTTGACTTAG
*
1381159 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
1381185 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1381211 G
1 G
1381212 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Found at i:1381397 original size:26 final size:26
Alignment explanation
Indices: 1381368--1381420 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1381358 GTTGACTTAG
*
1381368 GCATACGGAGTT-AATCCTCAGTCTAA
1 GCATACGAAGTTCAATCC-CAGTCTAA
*
1381394 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAATCCCAGTCTAA
1381420 G
1 G
1381421 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCAATCCCAGTCTAA
Found at i:1382969 original size:26 final size:26
Alignment explanation
Indices: 1382933--1382985 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1382923 GTTGACTTAG
*
1382933 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1382959 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1382985 G
1 G
1382986 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1383863 original size:26 final size:26
Alignment explanation
Indices: 1383827--1383879 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1383817 GTTGACTTAG
*
1383827 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
* *
1383853 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCATCCCCAATCTAA
1383879 G
1 G
1383880 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAATCTAA
Done.