Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 14 of 93
Found at i:1383915 original size:22 final size:22
Alignment explanation
Indices: 1383887--1383931 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
1383877 AAGATCGAAT
1383887 CGGCTTGCGCATTCTGCCTCTC
1 CGGCTTGCGCATTCTGCCTCTC
*
1383909 CGGCTTGTGCATTCTGCCTCTC
1 CGGCTTGCGCATTCTGCCTCTC
1383931 C
1 C
1383932 AGCTGGCTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.04, C:0.40, G:0.22, T:0.33
Consensus pattern (22 bp):
CGGCTTGCGCATTCTGCCTCTC
Found at i:1384534 original size:26 final size:26
Alignment explanation
Indices: 1384498--1384549 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1384488 TTGACTTAGC
*
1384498 CATACGAAGTTTATCCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
*
1384524 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATCCCCAGTCTAAG
1384550 ATTGAACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACGAAGTTCATCCCCAGTCTAAG
Found at i:1385786 original size:184 final size:184
Alignment explanation
Indices: 1385470--1385889 Score: 529
Period size: 184 Copynumber: 2.3 Consensus size: 184
1385460 CTCTGGTCGA
* * *
1385470 CTGAGCGTCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * **
1385535 ATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGCAGTAGGATCGACAGC
66 ATACGAAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTAGGATCGACAGC
* * * *
1385600 ACGCAG-GAGGGATCGGGTCGATCCTCGGCTCGCGCATTCTGCCTCTTCGACTGG
131 ACGCAGAG-GGGACCGGGTCGATCCCCGACTCGCGCATTCTGCCTCTCCGACTGG
1385654 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
* * * * ** * *
1385719 ATATGGAGTTTATTCCTAATCTAAGATTGGACCGGATCGGGGGTTGCAGTAGTAGGATC-AGCAG
66 ATACGAAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTAGGATCGA-CAG
* * * *
1385783 CACGTAGAGGGGACCGGGTCGATCCCCGACTTGTGCATTCTGCCTCTCCTACTGG
130 CACGCAGAGGGGACCGGGTCGATCCCCGACTCGCGCATTCTGCCTCTCCGACTGG
* ** * * * * *
1385838 CTGAGTGCCCATACGCCCGTTTCATGGGTTGGCTTAGGCATAGGGACTTCAT
1 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
1385890 TCCATATCTA
Statistics
Matches: 203, Mismatches: 31, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 1 0.00
184 201 0.99
185 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (184 bp):
CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGTCTAAGC
ATACGAAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTGCAGCAGTAGGATCGACAGC
ACGCAGAGGGGACCGGGTCGATCCCCGACTCGCGCATTCTGCCTCTCCGACTGG
Found at i:1386219 original size:158 final size:158
Alignment explanation
Indices: 1385942--1386568 Score: 661
Period size: 158 Copynumber: 4.0 Consensus size: 158
1385932 GGGACCGGGT
* * * * * *
1385942 CGATCCCTGGCTTGCGCATTATGGCTCTTCGGTCGGCTCAACGCCCGAACGCTTGTTTCGTGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGT
* * * * * *
1386007 TGACTTTGGCATACGAAGTTTATTCCCAATCTAAGATCGGATCGGACCGAGGGTTGTGGCAGCAG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAG
* *
1386072 GATCGAGAGCACATAGGGGGGATCGAGC
131 GATCGACAGCACGTAGGGGGGATCGAGC
* ** * * *
1386100 C-AGTCCCCGGCTTGCGCATTCTGCCTCTCCGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGG
1 CGA-TCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCGTGGG
* * *
1386164 TTGACTTAGGCATATGGAGTTCATTCTCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCA
65 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCA
* *
1386229 GGATCGACAGCACGCAGGGGGGATCGTGC
130 GGATCGACAGCACGTAGGGGGGATCGAGC
* ** * * * * *
1386258 CGATCCCTGACTTTTGCATTCTGCCTCTCCGATCGGCTGAGTGCCCGCACGCCCGTTTCATGGGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGT
* * * ** *
1386323 TGGCTTAGGCATA-GGTAGTTCATT-CCATGTCTATG-CCCCAGTCAGACCGAGGGTTGTGGCAG
66 TGACTTAGGCATACGG-AGTTCATTCCCA-GTCTAAGATCGGA-CCAGACCGAGGGTTGTGGCAG
* * * *
1386385 C-GAGACCGATAGCACGTAGAGGGGGATCGGGT
128 CAG-GATCGACAGCACGTAG-GGGGGATCGAGC
* * * ** * *
1386417 CGATCCCTGGCTTGTGCATTTTGGCTCTCCGATCGGCTCAGCGCTTGAACGCTCATTTCGTGAGT
1 CGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGT
* * *
1386482 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGATCGAGGGTTGTGGCAGTAG
66 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAG
* * *
1386547 GATCGGCTGCACGCAGGGGGGA
131 GATCGACAGCACGTAGGGGGGA
1386569 CCAGGCCATT
Statistics
Matches: 388, Mismatches: 70, Indels: 22
0.81 0.15 0.05
Matches are distributed among these distances:
157 8 0.02
158 253 0.65
159 119 0.31
160 8 0.02
ACGTcount: A:0.18, C:0.26, G:0.32, T:0.24
Consensus pattern (158 bp):
CGATCCCTGGCTTGCGCATTCTGCCTCTCCGATCGGCTCAGCGCCCGAACGCTCGTTTCGTGGGT
TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCAG
GATCGACAGCACGTAGGGGGGATCGAGC
Found at i:1386790 original size:26 final size:26
Alignment explanation
Indices: 1386754--1386806 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1386744 GTTGGCTTAG
1386754 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
1386780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1386806 G
1 G
1386807 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1387662 original size:26 final size:26
Alignment explanation
Indices: 1387632--1387684 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1387622 GTTGACTTAG
*
1387632 GCATACATAGTTCATCCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
** *
1387658 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATCCCTAGTCTAA
1387684 G
1 G
1387685 ATTGAACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCTAGTCTAA
Found at i:1388169 original size:26 final size:26
Alignment explanation
Indices: 1388133--1388185 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1388123 GTTGGCTTAG
1388133 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
*
1388159 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1388185 G
1 G
1388186 ATCAGATGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1388365 original size:25 final size:26
Alignment explanation
Indices: 1388326--1388380 Score: 87
Period size: 25 Copynumber: 2.2 Consensus size: 26
1388316 TGGGTTGACT
1388326 TAAGCATACGAAGTTCA-TCCCAGTC
1 TAAGCATACGAAGTTCATTCCCAGTC
1388351 TAAGCATAC-AGAGTTCATTCCCAGTC
1 TAAGCATACGA-AGTTCATTCCCAGTC
1388377 TAAG
1 TAAG
1388381 ATCAAAGCAG
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 1 0.04
25 15 0.54
26 12 0.43
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATTCCCAGTC
Found at i:1388400 original size:195 final size:196
Alignment explanation
Indices: 1388058--1388412 Score: 466
Period size: 196 Copynumber: 1.8 Consensus size: 196
1388048 TAGGGATCGA
* * * * * *
1388058 GCCGATCCCCGACTTACGCTTTCTGCCTCTCCGGTCGGCTGAGGACCCGAACGCTTGTTTCGTGG
1 GCCGATCCCCGACTTACACATTCTGCCTCTCCGATCGGCTAAGGACCCGAACGCTCGTTTCATGG
* * * * **
1388123 GTTGGCTTAGGCATACGGAGTTCATTCCATGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGAT
66 GTTGACTTAAGCATACGAAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
*
1388188 CAGATGAGACTGAGGGTTGCAGCAGCAGGACCAGCAGTAGGATTGACAGCATGTAGGGGGGACCA
131 CAGAAGAGACTGAGGGTTGCAGCAGCAGGACCAGCAGTAGGATTGACAGCATGTAGGGGGGACCA
1388253 G
196 G
* * * * * *
1388254 GCCGATCCTCGGCTTACACATTCTGCCTCTTCGATCGGTTAAGCG-CCCGCACGCTCGTTTTATG
1 GCCGATCCCCGACTTACACATTCTGCCTCTCCGATCGGCTAAG-GACCCGAACGCTCGTTTCATG
1388318 GGTTGACTTAAGCATACGAAGTTCATCCCA-GTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
65 GGTTGACTTAAGCATACGAAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGA
* *
1388382 TCA-AAGCAGA-TCGAGGGTTGTAGCTGCAGGA
130 TCAGAAG-AGACT-GAGGGTTGCAGCAGCAGGA
1388413 TCGGCAGCAC
Statistics
Matches: 135, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
194 3 0.02
195 55 0.41
196 76 0.56
197 1 0.01
ACGTcount: A:0.23, C:0.25, G:0.27, T:0.25
Consensus pattern (196 bp):
GCCGATCCCCGACTTACACATTCTGCCTCTCCGATCGGCTAAGGACCCGAACGCTCGTTTCATGG
GTTGACTTAAGCATACGAAGTTCATCCCATGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGAT
CAGAAGAGACTGAGGGTTGCAGCAGCAGGACCAGCAGTAGGATTGACAGCATGTAGGGGGGACCA
G
Found at i:1388706 original size:26 final size:26
Alignment explanation
Indices: 1388670--1388722 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1388660 GTTGGCTCAG
1388670 GCATACGGAGTTCATT-CCATGTCTAA
1 GCATACGGAGTTCATTCCCA-GTCTAA
1388696 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1388722 G
1 G
1388723 AGTTTGAGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1390299 original size:26 final size:26
Alignment explanation
Indices: 1390263--1390315 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1390253 GTTGACTTAG
*
1390263 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
*
1390289 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
1390315 G
1 G
1390316 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:1390793 original size:26 final size:26
Alignment explanation
Indices: 1390764--1390816 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1390754 GTTGGCTTAG
**
1390764 GCATACGGAGCTCATTCCTTGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
1390790 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
1390816 G
1 G
1390817 ATCGGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:1391009 original size:26 final size:26
Alignment explanation
Indices: 1390973--1391025 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1390963 GTTGACTTAG
1390973 GCATACGGAGTTCATCCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
*
1390999 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATCCCCAGTCTAA
1391025 G
1 G
1391026 AATTTGAGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATCCCCAGTCTAA
Found at i:1392355 original size:60 final size:58
Alignment explanation
Indices: 1392226--1392504 Score: 405
Period size: 59 Copynumber: 4.7 Consensus size: 58
1392216 TTTTGTGCAG
* * * *
1392226 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTGAAAATTTATTTTCAA
*
1392285 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-T-ATTTTTTTGAAAATTTATTTTCAA
* *
1392345 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAA-ATTTATTTTCAA
* ** * *
1392404 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAAATTTTTTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTCAA
1392462 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTCTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATT-TTTTT
1392505 TGATTTTTAT
Statistics
Matches: 198, Mismatches: 18, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
58 54 0.27
59 90 0.45
60 53 0.27
61 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGAAAATTTATTTTCAA
Found at i:1392407 original size:119 final size:116
Alignment explanation
Indices: 1392226--1392503 Score: 439
Period size: 119 Copynumber: 2.4 Consensus size: 116
1392216 TTTTGTGCAG
* * *
1392226 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAACTTTAATTTCGAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGGAAACTTTAATTTCAAGGAAAA
*
1392291 TTGATACTTTCAACTTTTCCCCAAAAATTGATTTTTTTGAAAATTTATTTTTAA
65 TTGATACTTTCAACTTTTCCCCAAAAA--CATTTTTTTGAAAATTTATTTTTAA
*
1392345 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTTATTTTCAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAAC-TTTAATTTCAAGGAAAA
* * *
1392410 TTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTGAAAATTTTTTTTTAA
65 TTGATACTTTCAACTTTTCCCCAAAAACATTTTTTTGAAAATTTATTTTTAA
1392462 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTCTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATT-TTTT
1392504 TTGATTTTTA
Statistics
Matches: 149, Mismatches: 8, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
117 59 0.40
118 15 0.10
119 75 0.50
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (116 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAACTTTAATTTCAAGGAAAAT
TGATACTTTCAACTTTTCCCCAAAAACATTTTTTTGAAAATTTATTTTTAA
Found at i:1392554 original size:30 final size:30
Alignment explanation
Indices: 1392520--1392605 Score: 97
Period size: 31 Copynumber: 2.9 Consensus size: 30
1392510 TTTATTTAAA
*
1392520 GAAAATAAAATAATAAAACAAAATAAAAGT
1 GAAAATAAAATAATAAAATAAAATAAAAGT
*
1392550 GAAAATAAAAAAAATAAAATAAAA-AAAAGT
1 GAAAAT-AAAATAATAAAATAAAATAAAAGT
* *
1392580 -AAAACCAAGATAA-AAAATAAAATAAA
1 GAAAA-TAAAATAATAAAATAAAATAAA
1392606 GGTAAAAAGG
Statistics
Matches: 48, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
28 9 0.19
29 12 0.25
30 12 0.25
31 15 0.31
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.14
Consensus pattern (30 bp):
GAAAATAAAATAATAAAATAAAATAAAAGT
Found at i:1392573 original size:13 final size:13
Alignment explanation
Indices: 1392516--1392576 Score: 54
Period size: 13 Copynumber: 4.6 Consensus size: 13
1392506 GATTTTTATT
1392516 TAAAGAAAATAAAA
1 TAAA-AAAATAAAA
* *
1392530 TAATAAAACAAAA
1 TAAAAAAATAAAA
*
1392543 T--AAAAGTGAAAA
1 TAAAAAAAT-AAAA
1392555 TAAAAAAAATAAAA
1 T-AAAAAAATAAAA
1392569 TAAAAAAA
1 TAAAAAAA
1392577 AGTAAAACCA
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
11 3 0.08
12 5 0.14
13 16 0.43
14 8 0.22
15 5 0.14
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.15
Consensus pattern (13 bp):
TAAAAAAATAAAA
Found at i:1392603 original size:5 final size:5
Alignment explanation
Indices: 1392521--1392583 Score: 62
Period size: 5 Copynumber: 12.8 Consensus size: 5
1392511 TTATTTAAAG
*
1392521 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
1392570 AAAA- AAAAGT AAAA
1 AAAAT AAAA-T AAAA
1392584 CCAAGATAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
3 3 0.06
4 8 0.16
5 28 0.57
6 6 0.12
7 4 0.08
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:1392660 original size:14 final size:14
Alignment explanation
Indices: 1392641--1392682 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
1392631 AATCTTGATA
*
1392641 AATAAAAAATAAAT
1 AATAAAAAAAAAAT
1392655 AATAAAAAAAAAAT
1 AATAAAAAAAAAAT
1392669 AATAATAAAAAAAA
1 AATAA-AAAAAAAA
1392683 ATCTGGAGCG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 18 0.69
15 8 0.31
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (14 bp):
AATAAAAAAAAAAT
Found at i:1392666 original size:17 final size:18
Alignment explanation
Indices: 1392638--1392684 Score: 71
Period size: 17 Copynumber: 2.7 Consensus size: 18
1392628 CCTAATCTTG
1392638 ATAAATAAAAAATA-AATA
1 ATAAA-AAAAAATATAATA
1392656 ATAAAAAAAAA-ATAATA
1 ATAAAAAAAAATATAATA
1392673 ATAAAAAAAAAT
1 ATAAAAAAAAAT
1392685 CTGGAGCGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
16 1 0.04
17 21 0.78
18 5 0.19
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (18 bp):
ATAAAAAAAAATATAATA
Found at i:1393536 original size:46 final size:46
Alignment explanation
Indices: 1393480--1393588 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 46
1393470 ATTATAGGAT
* *
1393480 AAATAAAAAAAT-AATAATAATAACAGATATATA-ATTAGATAAATAA
1 AAATAAAAAAATAAATAA-AATAAAAAATATATATATTA-ATAAATAA
* *
1393526 AAATACAAAAATAAATAAAATAAAAAATATATATATTAATAAATAG
1 AAATAAAAAAATAAATAAAATAAAAAATATATATATTAATAAATAA
* *
1393572 TAAT-AATAAATAAATAA
1 AAATAAAAAAATAAATAA
1393589 TAAATACATA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
45 11 0.20
46 34 0.63
47 9 0.17
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.27
Consensus pattern (46 bp):
AAATAAAAAAATAAATAAAATAAAAAATATATATATTAATAAATAA
Found at i:1393541 original size:18 final size:16
Alignment explanation
Indices: 1393518--1393554 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
1393508 ATATAATTAG
1393518 ATAAATAAAAATACAAAA
1 ATAAAT-AAAATA-AAAA
1393536 ATAAATAAAATAAAAA
1 ATAAATAAAATAAAAA
1393552 ATA
1 ATA
1393555 TATATATTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.37
17 6 0.32
18 6 0.32
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (16 bp):
ATAAATAAAATAAAAA
Found at i:1393594 original size:28 final size:29
Alignment explanation
Indices: 1393534--1393599 Score: 73
Period size: 28 Copynumber: 2.3 Consensus size: 29
1393524 AAAAATACAA
*
1393534 AAATAAATA-AAATAAAAAATATATATAT
1 AAATAAATAGAAATAAAAAATAAATATAT
* * *
1393562 TAATAAATAGTAATAATAAATAAATA-AT
1 AAATAAATAGAAATAAAAAATAAATATAT
*
1393590 AAATACATAG
1 AAATAAATAG
1393600 GATATAAAGG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (29 bp):
AAATAAATAGAAATAAAAAATAAATATAT
Found at i:1393654 original size:8 final size:8
Alignment explanation
Indices: 1393641--1393679 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
1393631 TAAAATATAG
*
1393641 AATAAAAT
1 AATAAAAA
1393649 AATAAAAA
1 AATAAAAA
1393657 AAT-AAAA
1 AATAAAAA
1393664 AATAACAAA
1 AATAA-AAA
1393673 AATAAAA
1 AATAAAA
1393680 TTGGACTTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 7 0.25
8 13 0.46
9 8 0.29
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (8 bp):
AATAAAAA
Found at i:1393662 original size:16 final size:17
Alignment explanation
Indices: 1393641--1393680 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
1393631 TAAAATATAG
1393641 AATAAAATAATAA-AAA
1 AATAAAATAATAACAAA
1393657 AATAAAA-AATAACAAA
1 AATAAAATAATAACAAA
1393673 AATAAAAT
1 AATAAAAT
1393681 TGGACTTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (17 bp):
AATAAAATAATAACAAA
Found at i:1393667 original size:23 final size:24
Alignment explanation
Indices: 1393632--1393679 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
1393622 ATATATACAT
* * *
1393632 AAAATATAGAATAA-AATAATAAA
1 AAAATAAAAAATAACAAAAATAAA
1393655 AAAATAAAAAATAACAAAAATAAA
1 AAAATAAAAAATAACAAAAATAAA
1393679 A
1 A
1393680 TTGGACTTAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (24 bp):
AAAATAAAAAATAACAAAAATAAA
Found at i:1394015 original size:41 final size:42
Alignment explanation
Indices: 1393886--1394057 Score: 242
Period size: 40 Copynumber: 4.1 Consensus size: 42
1393876 TTTAACCAAA
* * * *
1393886 GCTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATAAACT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAATAAATT
* * *
1393928 GCTCATTTAAACAGAGGCACCACGACTTTG--AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAATAAATT
*
1393968 GCTCCTCTAAACAGAGGCACCACGACTTTG-AAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAATAAATT
1394009 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGAAAAAATAAATT
1394052 GCTCCT
1 GCTCCT
1394058 TGACAATCAT
Statistics
Matches: 117, Mismatches: 10, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
40 36 0.31
41 36 0.31
42 29 0.25
43 16 0.14
ACGTcount: A:0.38, C:0.24, G:0.15, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAATAAATT
Found at i:1395086 original size:9 final size:8
Alignment explanation
Indices: 1395068--1395144 Score: 91
Period size: 8 Copynumber: 9.1 Consensus size: 8
1395058 CCTTTTTCAC
*
1395068 TTTTTCTT
1 TTTTTATT
*
1395076 TTTTCATT
1 TTTTTATT
1395084 TTTTTATTT
1 TTTTTA-TT
*
1395093 TTTTTAAT
1 TTTTTATT
1395101 TTTTTATT
1 TTTTTATT
1395109 TTTTTATT
1 TTTTTATT
1395117 TTTTTCATTT
1 TTTTT-A-TT
1395127 TTTTTCATT
1 TTTTT-ATT
1395136 TTTTTATT
1 TTTTTATT
1395144 T
1 T
1395145 CATCATTTTT
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
8 36 0.59
9 16 0.26
10 9 0.15
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTATT
Found at i:1395087 original size:8 final size:8
Alignment explanation
Indices: 1395060--1395155 Score: 70
Period size: 8 Copynumber: 11.6 Consensus size: 8
1395050 TTGAGTCTCC
*
1395060 TTTTTCAC
1 TTTTTCAT
1395068 TTTTTC-T
1 TTTTTCAT
1395075 TTTTTCAT
1 TTTTTCAT
*
1395083 TTTTTTATTT
1 TTTTTCA--T
*
1395093 TTTTTAAT
1 TTTTTCAT
1395101 TTTTT-AT
1 TTTTTCAT
*
1395108 TTTTTTATT
1 TTTTTCA-T
1395117 TTTTTCATTT
1 TTTTTCA--T
1395127 TTTTTCAT
1 TTTTTCAT
*
1395135 TTTTTTAT
1 TTTTTCAT
**
1395143 TTCATCAT
1 TTTTTCAT
1395151 TTTTT
1 TTTTT
1395156 TTTCAAGCAT
Statistics
Matches: 72, Mismatches: 10, Indels: 12
0.77 0.11 0.13
Matches are distributed among these distances:
7 13 0.18
8 36 0.50
9 7 0.10
10 16 0.22
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTCAT
Found at i:1395087 original size:16 final size:16
Alignment explanation
Indices: 1395068--1395156 Score: 88
Period size: 16 Copynumber: 5.3 Consensus size: 16
1395058 CCTTTTTCAC
*
1395068 TTTTTCTTTTTTCATT
1 TTTTTATTTTTTCATT
* *
1395084 TTTTTATTTTTTTTAAT
1 TTTTTA-TTTTTTCATT
*
1395101 TTTTTATTTTTTTATT
1 TTTTTATTTTTTCATT
1395117 TTTTTCATTTTTTTTCATT
1 TTTTT-A--TTTTTTCATT
**
1395136 TTTTTATTTCATCATT
1 TTTTTATTTTTTCATT
1395152 TTTTT
1 TTTTT
1395157 TTCAAGCATA
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
16 32 0.52
17 15 0.24
18 1 0.02
19 14 0.23
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTATTTTTTCATT
Found at i:1395095 original size:10 final size:10
Alignment explanation
Indices: 1395082--1395140 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 10
1395072 TCTTTTTTCA
1395082 TTTTTTTATT
1 TTTTTTTATT
*
1395092 TTTTTTAATTT
1 TTTTTTTA-TT
*
1395103 TTTATTTTTTT
1 TTT-TTTTATT
1395114 ATTTTTTTCATT
1 -TTTTTTT-ATT
*
1395126 TTTTTTCATT
1 TTTTTTTATT
1395136 TTTTT
1 TTTTT
1395141 ATTTCATCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
10 15 0.38
11 17 0.43
12 8 0.20
ACGTcount: A:0.12, C:0.03, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:1395096 original size:25 final size:25
Alignment explanation
Indices: 1395068--1395144 Score: 102
Period size: 25 Copynumber: 3.0 Consensus size: 25
1395058 CCTTTTTCAC
*
1395068 TTTTTCTTTTTTCATTTTTTTATTT
1 TTTTTATTTTTTCATTTTTTTATTT
1395093 TTTTTAATTTTTT-ATTTTTTTATTT
1 TTTTT-ATTTTTTCATTTTTTTATTT
*
1395118 TTTTCATTTTTTTTCATTTTTTTATTT
1 TTTT--TATTTTTTCATTTTTTTATTT
1395145 CATCATTTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
25 21 0.46
26 12 0.26
27 13 0.28
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.83
Consensus pattern (25 bp):
TTTTTATTTTTTCATTTTTTTATTT
Found at i:1395150 original size:26 final size:24
Alignment explanation
Indices: 1395074--1395157 Score: 80
Period size: 25 Copynumber: 3.2 Consensus size: 24
1395064 TCACTTTTTC
*
1395074 TTTTTTCATTTTTTTATTTT-TTT
1 TTTTTTCATTTTTTTATTTTCATT
*
1395097 TAATTTTTTATTTTTTTATTTTTTTCATT
1 T--TTTTTCATTTTTTTA---TTTTCATT
1395126 TTTTTTCATTTTTTTATTTCATCATT
1 TTTTTTCATTTTTTTATTT--TCATT
1395152 TTTTTT
1 TTTTTT
1395158 TCAAGCATAG
Statistics
Matches: 50, Mismatches: 3, Indels: 13
0.76 0.05 0.20
Matches are distributed among these distances:
23 1 0.02
24 3 0.06
25 14 0.28
26 11 0.22
27 14 0.28
28 4 0.08
29 3 0.06
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (24 bp):
TTTTTTCATTTTTTTATTTTCATT
Found at i:1400365 original size:17 final size:16
Alignment explanation
Indices: 1400349--1400391 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
1400339 TTGGACTTTA
1400349 AGAGGTTTTGAATTTT
1 AGAGGTTTTGAATTTT
*
1400365 AGGGGATTTTGAATTTTT
1 AGAGG-TTTTGAA-TTTT
*
1400383 AGTGGTTTT
1 AGAGGTTTT
1400392 AAAAACTTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 4 0.17
17 11 0.48
18 8 0.35
ACGTcount: A:0.21, C:0.00, G:0.28, T:0.51
Consensus pattern (16 bp):
AGAGGTTTTGAATTTT
Found at i:1402026 original size:26 final size:26
Alignment explanation
Indices: 1401997--1402048 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1401987 CCGGTCCGAT
1401997 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
1402023 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
1402049 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:1402887 original size:26 final size:26
Alignment explanation
Indices: 1402858--1402910 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1402848 CCAGTTCGAT
*
1402858 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
1402884 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
1402910 C
1 C
1402911 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:1404170 original size:892 final size:885
Alignment explanation
Indices: 1402504--1404925 Score: 2955
Period size: 892 Copynumber: 2.7 Consensus size: 885
1402494 TTGGTAGACG
* * * * * ** **
1402504 TCAGCTAAAAACTTGAAGTGTACAGGATTTTGTCAGCATTTGAAAAAAGTATCCCCATTTCGGAC
1 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCTTCATTTTAGAC
* *
1402569 ACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
66 ACCTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
1402634 CAAGGTTTGATGAGGAATAGGGAGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATG
131 CGAGGTTTGATGAGGGATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
1402699 TGCGCACACCCCCCCCCCCCCCCAATCGTCGGAACCCCAATACCGTCGGTTAGGTTCTTCGGTGA
195 TGCGCACA------CCCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* * * * *
1402764 TGCTCCGATGATGGTGCCTCGGGCGAAAAAAAATTTGGCACTAGCAAATGCCCGAGCCTAGCATT
254 TGCTCCGATGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATG
** * *
1402829 TGCATTCACAACCCTCGATCCAGTTCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGG
319 TGCACCCACAACCCTCGATCCAGTTTGATCTTACACT-GGAATGAACTCCGTATGCTTAGACTGG
* *
1402894 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAAGCGGCCAGAGG
383 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGG
* ** * * * * * * *
1402959 GGCAAGATGTGCAAGTCGGGGATCGATCGGGGACCCCC-CTGC-G-TGC--TGC-C-G-TAACCC
448 GGCAGGATGCACAAGCCGGGGATCG-GCTGGGTCCCCCTCTGCTGCTACAATCCTCTGACAACCC
* * * * * *
1403016 TCAGTC-CAGTCCAATCTTAGACTGGGAATGAACTCTGTATGTCTAAGCCAACCGATGAAACCAG
512 TCAGTCTGA-TTCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAG
* * * *
1403080 CGGGCCGACGGGCACTACGCCGACCAGAGAGGCGGGATGCACAAACCGTGGATCGATAGGGTGGC
576 CGGGCGGGCGGGCACTACGTCGACCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGC
* *** *
1403145 AGGTGGGTTTAGGCACATCTTCATATTTTTGTTGTACCAACACCATTTTTTGTGGCTAGTAAATT
641 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATACCAACACCATTTTTTATGGCTAGTAAATT
* * * *
1403210 CATACCAGGTCCCCTAAGCCTTCATGTGAGGTTTTATGGCAAGACGACTTGTTTTCTATTTTTCA
706 CATACAAGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
**
1403275 CGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-TAAAATTTTTTCAGAAGGAT-TTTTGGCA
771 CGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTGT-AAATTTTTTCAGAAGG-TGTTTTGGCA
1403338 CCAAACTTGGTAGACGTGATCCTTGTATTTTGGTTGGCATGCACAAAAAAAT
834 CCAAACTTGGTAGACGTGATCCTTGTATTTTGGTTGGCATGCACAAAAAAAT
1403390 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCTTCATTTTAGAC
1 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCTTCATTTTAGAC
* *
1403455 ACCTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
66 ACCTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
1403520 CGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
131 CGAGGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * **
1403585 TGTGCACA-CCCCCCCAAATTGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCTCC
195 TGCGCACACCCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC
* * * * * *
1403649 GATGACGGTGCCCCGGGTGAAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGAAC
260 GATGATGGTGCCCCGGGCG-AAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCAC
* * *
1403714 CCGCAACCCTCGATCCAGTTTGATCTTGCACTGGAAATGAACTCCATATGCTTAGACTGGGAATG
324 CCACAACCCTCGATCCAGTTTGATCTTACACTGG-AATGAACTCCGTATGCTTAGACTGGGAATG
* * *
1403779 AACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAG
388 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAG
* *
1403844 GATGCCCAAGCCGGGGATCGGCTTGGTCCCCCTCTGCATGCTACAAATCCTACTGGAACAACCCT
453 GATGCACAAGCCGGGGATCGGCTGGGTCCCCCTCTGC-TGCTAC-AATCCT-CT-G-ACAACCCT
* * *
1403909 CAGTCTGATTCTATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCCAACCGATGAAACGAGCT
513 CAGTCTGATTCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCG
* * * *
1403974 GGCGGGCGGGCACTACGTCGGCCAGAAAGGCGGGATGCACAAGCCGTGGATTGATAGGGTGGTAG
578 GGCGGGCGGGCACTACGTCGACCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGCAG
* ** *
1404039 GTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCA
643 GTGGGTTTAGGCACATCTTCATATTTCTGCCATACCAACACCATTTTTTATGGCTAGTAAATTCA
*
1404103 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
708 TACAA-GGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * *
1404168 GATTTTCAAAATTTTTTATGGTTTGGGATTTTTTGTAAATTTTTTTAGAAGGTGTTTTGGCCCCA
772 GATTTTCAAAACTTTTTACGGTTCGGGATTTTTTGTAAATTTTTTCAGAAGGTGTTTTGGCACCA
** **
1404233 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTGTGCACAAAAAAAT
837 AACTTGGTAGACGTGATCCTTGTATTTTGGTTGGCATGCACAAAAAAAT
* * *
1404282 TCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAACAA-TGTCTTCATTTTAGA
1 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT-AAAAAAAGTGTCTTCATTTTAGA
*
1404346 CACCTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
65 CACCTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
1404411 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCTATCGCACATCAT
130 TCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * * *
1404476 GTGCGCACACCCCCCCTCGCCCCCCAATCACCGGAACTCCAAAGTCGTCGGTCAGGTTCTCTGGC
194 GTGCGCACA-----CC-C-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* * * *
1404541 GACGCTCC-AAGATGGTGCCCTGAGCGAAAAAAAATGTGGCACC-GACACATGCCCGAGCCTAGC
252 GATGCTCCGATGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAG-CACATGCCCGAGCCTAGC
* * * * * * *
1404604 ATGTGCACCCATAACCCTTGGTCC-GATCTGATCCTACCCTTGGAATGAACTCCGTATGGTTAGA
316 ATGTGCACCCACAACCCTCGATCCAG-TTTGATCTTACAC-TGGAATGAACTCCGTATGCTTAGA
* ** * * ** * *
1404668 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATAAGCGTGCGAGCGTTCAGTCGACTA
379 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCA
* * * *
1404733 TAGGGGCAGGATGCACAAGCCGAGGATTGG-TCGGGTCCCCTCCTACGTGCTG-T-CAATCTTGC
444 GAGGGGCAGGATGCACAAGCCGGGGATCGGCT-GGGT-CCC-CCT-C-TGCTGCTACAATCCT-C
* * *
1404795 T-ATCGTAATCCTC-GATCTG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAA
503 TGA-C--AACCCTCAG-TCTGATTCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * **
1404857 CCGACAAAACAAGCGGGCGGGCGGGCACTACGTCAACCAGAGAGGTGGGATGCGTAAGCCGTGGA
563 CCGATGAAACAAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGGCGGGATGCACAAGCCGTGGA
1404922 TCGA
628 TCGA
1404926 AGTGTACAGG
Statistics
Matches: 1319, Mismatches: 174, Indels: 74
0.84 0.11 0.05
Matches are distributed among these distances:
879 73 0.06
880 172 0.13
882 1 0.00
883 2 0.00
886 186 0.14
887 2 0.00
888 1 0.00
890 1 0.00
891 24 0.02
892 493 0.37
893 9 0.01
895 1 0.00
896 1 0.00
897 7 0.01
898 273 0.21
899 21 0.02
900 46 0.03
901 3 0.00
902 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (885 bp):
TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCTTCATTTTAGAC
ACCTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG
ATGATGGTGCCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCC
ACAACCCTCGATCCAGTTTGATCTTACACTGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGAT
GCACAAGCCGGGGATCGGCTGGGTCCCCCTCTGCTGCTACAATCCTCTGACAACCCTCAGTCTGA
TTCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCGGGCG
GGCACTACGTCGACCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTT
AGGCACATCTTCATATTTCTGCCATACCAACACCATTTTTTATGGCTAGTAAATTCATACAAGGT
CCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAA
AACTTTTTACGGTTCGGGATTTTTTGTAAATTTTTTCAGAAGGTGTTTTGGCACCAAACTTGGTA
GACGTGATCCTTGTATTTTGGTTGGCATGCACAAAAAAAT
Found at i:1405540 original size:631 final size:628
Alignment explanation
Indices: 1404294--1405556 Score: 1484
Period size: 631 Copynumber: 2.0 Consensus size: 628
1404284 AGCTAAAAAG
**
1404294 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAACAATGTCTTCATTTTAGACACCTTAATGGCT
1 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAACAATGTCCCCATTTTAGACACCTTAATGGCT
* *
1404359 ACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATG
66 ACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATG
* * *
1404424 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCGCCTATCGCACATCATGTGCGCACACCCC
131 AGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * ** *
1404489 CCCTCGCCCCCCAATCACCGGAACTCCAAAGTCGTCGGTCAGGTTCTCTGGCGACGCTCCAAGAT
196 CCCTCACCCCCCAATCACCAGAACCCCAAAGCCACCGGTCAGGTTCTCTGACGACGCTCCAAGAT
* * ** * * *
1404554 GGTGCCCTGAGCGAAAAAAAATGTGGCACCGACACATGCCCGAGCCTAGCATGTGCACCCATAAC
261 GGTACCCCGAGCGAAAAAAAATACGGCACCGACACATGCCCGAACCCAGCATGTGCACCCACAAC
* ** * * *
1404619 CCTTGGTCCGATCTGATCCTACCCTTGGAATGAACTCCGTATGGTTAGACTGGGAATGAACTCCA
326 CCTCGGTCCGATCCAATCCTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCA
* * * * * * * *
1404684 TATGCCTAAGTCAACCCACGAAATAAGCGTGCGAGCGTTCAGTCGACTATAGGGGCAGGATGCAC
391 TATGCCTAAGTCAAACCACGAAATAACCATACGAGCCTTCAGCCGACCAGAGGGGCAGGATGCAC
* ** * * * *
1404749 AAGCCGAGGATTGGTCGGGTCCCCTCCTACGTGCTGTCAATCTTGCTATCGTAATCCTCGATCTG
456 AAGCCGAGGATCGACCGGGTCCCCTCCTACGTGCTATCAATCCTACTATCGTAACCCTCGATCTG
* * * **
1404814 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACAAAACAAGCGGGCGGGC
521 GTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACAAGCGGGCGGAA
* * *
1404879 GGGCACTACGTCAACCAGAGAGGTGGGATGCGTAAGCCGTGGA
586 GGGCACTACGTCAACCAAAGAGGCGGGATGCGGAAGCCGTGGA
* *
1404922 TCGAAGTGTACAGGATTTTGTGACCGTTTGAAAA-AATTGTCCCCATTTTAGACA-CTTCAATGG
1 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAACAA-TGTCCCCATTTTAGACACCTT-AATGG
** * **
1404985 CTACTAGTGGCAAACCTGTAAAATCTCAAATGTTCTTTATGGGGGTGTGAGTTCTCAAGGTTTGA
64 CTACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGA
* ** * *
1405050 TGAGGGATAGGGGCCCAATTTAATTGCTAAGTACCAGCACCCATCGCACATCATGTGCGTACATC
129 TGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
*** * *
1405115 CCCCCC-CACCCTTCCCAATTGTCAGAACCCCAATGCCACCGGTCAGGTTCT-TCGACGATGCTC
193 CCCCCCTCACCC--CCCAATCACCAGAACCCCAAAGCCACCGGTCAGGTTCTCT-GACGACGCTC
*** * * *
1405178 TGGCGATGGTACCCCGGGCGAAGAAAAATACGGTACC-AGCACATGCCCGAACCCAGCATGTGCA
255 -CAAGATGGTACCCCGAGCGAAAAAAAATACGGCACCGA-CACATGCCCGAACCCAGCATGTGCA
* * * * * *
1405242 CCCACATCCCTCGGTTCGATCCAATCTTACACTGGGATTGAACTCTGTATGCTTAGATTGGGAAT
318 CCCACAACCCTCGGTCCGATCCAATCCTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
1405307 GAATTCCGTATGCCTAAGTCAAACCATGAAATGACCATACGGGCACTT-AGCC-AGCCAGAGGGG
383 GAACTCCATATGCCTAAGTCAAACCACGAAATAACCATACGAGC-CTTCAGCCGA-CCAGAGGGG
* ** * * *
1405370 TAGGATGTGCAAGCCGAGGATCGACCGGGTCCCC-CTCTATGTGCTATCGATCCTACTGTCGTAA
446 CAGGATGCACAAGCCGAGGATCGACCGGGTCCCCTC-CTACGTGCTATCAATCCTACTATCGTAA
* *
1405434 CCCTC-ATTTCGGTCTAATGTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAAC
510 CCCTCGATCT-GGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAAC
* * *
1405498 GAGCGGGCGGAAGGGCACTACG-CAGGCTAAAGAGGCGGGATGCGGAAGCCGTGGA
574 AAGCGGGCGGAAGGGCACTACGTCA-ACCAAAGAGGCGGGATGCGGAAGCCGTGGA
1405553 TCGA
1 TCGA
1405557 TAGGGCGGTA
Statistics
Matches: 527, Mismatches: 95, Indels: 23
0.82 0.15 0.04
Matches are distributed among these distances:
627 5 0.01
628 169 0.32
629 8 0.02
630 45 0.09
631 298 0.57
632 2 0.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (628 bp):
TCGAAGTGTACAAGATTTTGTGACCATTTGAAAACAATGTCCCCATTTTAGACACCTTAATGGCT
ACTAGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATG
AGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCTCACCCCCCAATCACCAGAACCCCAAAGCCACCGGTCAGGTTCTCTGACGACGCTCCAAGAT
GGTACCCCGAGCGAAAAAAAATACGGCACCGACACATGCCCGAACCCAGCATGTGCACCCACAAC
CCTCGGTCCGATCCAATCCTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCA
TATGCCTAAGTCAAACCACGAAATAACCATACGAGCCTTCAGCCGACCAGAGGGGCAGGATGCAC
AAGCCGAGGATCGACCGGGTCCCCTCCTACGTGCTATCAATCCTACTATCGTAACCCTCGATCTG
GTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACAAGCGGGCGGAA
GGGCACTACGTCAACCAAAGAGGCGGGATGCGGAAGCCGTGGA
Found at i:1406189 original size:26 final size:26
Alignment explanation
Indices: 1406153--1406205 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1406143 CTGGTCCGAT
1406153 CTTACACTGGGAATGAACTT-CGTATG
1 CTTACACTGGGAATGAA-TTCCGTATG
*
1406179 CTTAGACTGGGAATGAATTCCGTATG
1 CTTACACTGGGAATGAATTCCGTATG
1406205 C
1 C
1406206 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAATTCCGTATG
Found at i:1406694 original size:885 final size:888
Alignment explanation
Indices: 1404922--1407288 Score: 3023
Period size: 885 Copynumber: 2.7 Consensus size: 888
1404912 AAGCCGTGGA
* * *
1404922 TCGAAGTGTACAGGATTTTGTGACCGTTTGAAAAAATTGTCCCCATTTTAGACACTTCAATGGCT
1 TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCT
* ** * *
1404987 ACTAGTGGCAAACCTGTAAAATCTCAAATGTTCTTTATGGGGGTGTGAGTTCTCAAGGTTTGATG
66 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* * ** *
1405052 AGGGATAGGGGCCCAATTTAATTGCTAAGTACCAGCACCCATCGCACATCATGTGCGTACATCCC
131 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACA---C
* * * *
1405117 CCCCCACCCTTCCCAATTGTCAGAACCCCAATGCCACCGGTCAGGTTCTTCGACGATGCTCTGGC
192 CCCCCACCCCT-CCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-TC--CGA----C--GC
* * * * * *
1405182 GATGGTACCCCGGGCGAAGAAAAATACGGTACCAGCACATGCCCGAACCCAGCATGTGCACCCAC
247 GATGGTGCCCCGGGCGAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCAC
* * * *
1405247 ATCCCTCGGT-TCGATCCAATCTTACACTGGGATTGAAC-TCTGTATGCTTAGATTGGGAATGAA
312 ATCCCTCGGTCT-GGTCCGATCTTACACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAA
* * * * *
1405310 TTCCGTATGCCTAAGTCAAACCATGAAATGACCATACGGGCACTTAGCCAGCCAGAGGGGTAGGA
375 TTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTTAGCCAGCCAGAGGGGTAGGA
* ** * * ** *
1405375 TGTGCAAG-CCGAGGATCGACCGGGTCCCCCTCTATGTGCTATCGATCCTACTGTCGTAACCCTC
440 TGTGCAAGTCAGAGGATCGGTCGGGTCCCCCCCTATGTGATGCCGATCCTACTATCGTAACCCTC
* * * * *
1405439 ATTTCGGTCTAATGTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGG
505 AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGG
* * * * *
1405504 GCGGAAGGGCACTACGCAGGCTAAAGAGGCGGGATGCGGAAGCCGTGGATCGATAGGGCGGTAGG
570 GCGGACGGGCATTACGCAGGCCAAAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGG
* * *
1405569 TAGGTTTCGGTACATCTTCATACTTCTACCATGCCAATGCCATTTTTATCGCCTGTAAATTCATA
635 TAGGTTTAGGCACATCTTCATACTTCTACCATGCCAATGCCATTTTTATCACCTGTAAATTCATA
* *
1405634 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGA
700 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
1405699 TTTTTAAAACTTTTTACGGTTCAAGATTTTCTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
765 TTTTTAAAACTTTTTACGGTTCAAGATTTTCTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * *
1405764 CTTGTTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAAC
830 CATGGTAGACATAATCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAAC
* *
1405823 TCGATGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
1 TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCT
* *
1405888 ACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
66 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
*
1405953 AGGGACAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
131 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACCCC
* * * * *
1406018 CCGCCCCTCCAATCGTCGGAACCCTAATGCCGTCGATTAGGTTCTCC-A-GCGATGGTGCCCCGG
195 CCACCCCTCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGCGATGGTGCCCCGG
* * *
1406081 GCGAAAAAAAATGCAGCACCAGCACATGCACGAGCCCAGCATGTGCACCCATATCCCTTGGTCTG
260 GCGAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACATCCCTCGGTCTG
1406146 GTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAAG
325 GTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAAG
* * * **
1406211 TCAACCCACAAAAAGAGCGT-CGGGCGCTTAGCCGGCCAGAGGGGTAGGATGCCCAAGTCAG-GG
390 TCAACCCACGAAATGAGCGTACGGGCGCTTAGCCAGCCAGAGGGGTAGGATGTGCAAGTCAGAGG
* * *
1406274 ATCGGTCGAGTCCCCCCCTGTGTGATGCCAATCCTACTATCGTAACCCTCAGTCCGGTCTGATCT
455 ATCGGTCGGGTCCCCCCCTATGTGATGCCGATCCTACTATCGTAACCCTCAGTCCGGTCTGATCT
* * * * *
1406339 TAGATTGGAAATGAACTCCGTATGCCTAAGCTAACCAACAGAACGAGCGGGCGGACGGGCATTAC
520 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGACGGGCATTAC
* * * * * * *
1406404 GCCGGCCAGAGAGGCAGGTTGTGCAAGCCTTGGATCGATAGGGCGGTAGGTGGGTTTAGGCATAT
585 GCAGGCCAAAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTAGGTTTAGGCACAT
* * * * * *
1406469 CTTCATATTTTTTCCATGCCAATGCTATTTTTATCACTTGTAAATTCATGCAATGGTCCCTTAAG
650 CTTCATACTTCTACCATGCCAATGCCATTTTTATCACCTGTAAATTCATACAATGGTCCCTTAAG
* * *
1406534 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTT
715 CCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTT
** *
1406599 ACGGTTCGGGATTTTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACATAA
780 ACGGTTCAAGATTTTCTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACATAA
* * *
1406664 TCCTTGCATTTTTGTTGGCTTGCA-AAAAAAATTTAGCTAAAAAC
844 TCCTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAAC
* *
1406708 TCGAAGTGTACACGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAGTGGCT
1 TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCT
* *
1406773 ACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAA-GGGGTTTGAGTTCTCAAGGTTTGATG
66 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
1406837 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGA-A-----
131 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCCCC
*
1406896 CACCCC-CCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTAATGCTCCGACGATGG
196 CACCCCTCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-G--A-----CG-CGATGG
* * * * *
1406960 TGCCCC-GGCTTAAAAAAAATG-TGTCACCAGCACATGCCCAAGCCCATCATGTGCACCCACAAC
252 TGCCCCGGGC-GAAAAAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGCACCCACATC
* * * * * * *
1407023 CCTCGGTCTGGTCTGATCTTCCACTGGGAATGAACTCCATATGCTTAAACTGGGAATGAACTCTG
315 CCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAATTCCG
* * * * * * *
1407088 TATGCCTAAGTCAACCCACGAAATGAGTGTGCAGGCGCTCAGCCCGCCAGAGGGGCAAGATGTGC
380 TATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTTAGCCAGCCAGAGGGGTAGGATGTGC
* * * * ** *
1407153 AA-TCTGAGGATCGGTCGGGT-CCCCCCTACGT-ACTGCCGATCCTGCTACCACAACCTTC-GAT
445 AAGTCAGAGGATCGGTCGGGTCCCCCCCTATGTGA-TGCCGATCCTACTATCGTAACCCTCAG-T
* **
1407214 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGAACG
508 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCG
*
1407279 GGCGGGCATT
573 GACGGGCATT
1407289 TGAAAAAAGT
Statistics
Matches: 1278, Mismatches: 167, Indels: 56
0.85 0.11 0.04
Matches are distributed among these distances:
876 34 0.03
877 5 0.00
880 1 0.00
882 1 0.00
883 1 0.00
884 80 0.06
885 444 0.35
886 215 0.17
887 241 0.19
888 41 0.03
893 1 0.00
894 1 0.00
896 2 0.00
897 29 0.02
898 10 0.01
901 172 0.13
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (888 bp):
TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACCCCC
CACCCCTCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGCGATGGTGCCCCGGG
CGAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACATCCCTCGGTCTGG
TCCGATCTTACACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGT
CAACCCACGAAATGAGCGTACGGGCGCTTAGCCAGCCAGAGGGGTAGGATGTGCAAGTCAGAGGA
TCGGTCGGGTCCCCCCCTATGTGATGCCGATCCTACTATCGTAACCCTCAGTCCGGTCTGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGACGGGCATTACG
CAGGCCAAAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTAGGTTTAGGCACATC
TTCATACTTCTACCATGCCAATGCCATTTTTATCACCTGTAAATTCATACAATGGTCCCTTAAGC
CTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTA
CGGTTCAAGATTTTCTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACATAATC
CTTGCATTTTTGTTGGCATGCACAAAAAAATTCAGATAAAAAC
Found at i:1407814 original size:579 final size:580
Alignment explanation
Indices: 1406711--1407865 Score: 1575
Period size: 579 Copynumber: 2.0 Consensus size: 580
1406701 TAAAAACTCG
* * *
1406711 AAGTGTACACGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAGTGGCTACT
1 AAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACT
*
1406776 GGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGTTTGAGTTCTCAAGGTTTGATGAGGG
66 GGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
*
1406841 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCAA
131 ATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCC-A
* *** ** *
1406906 TCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTAATGCTCCGACGATGGTGCCCCGGCTT
195 TCA-C-G-ACCCCAATGCCGCCGGTCAGGGTCTCCAACAATGCTCCGACGATGGTGCCCAAGCTA
* *
1406971 AAAAAAAATGTGTCACCAGCACATGCCCAAGCCCATCATGTGCACCCACAACCCTCGGTCTGGTC
257 AAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTC
* * ** * **
1407036 TGATCTTCCACTGGGAATGAACTCCATATGCTTAAACTGGGAATGAACTCTGTATGCCTAAGTCA
322 TGATCTTACACTGGGAATGAAATCCATATGCTTAAACTACGAATAAACTCCATATGCCTAAGTCA
* * * ** * *
1407101 ACCCACGAAATGAGTGTGCAGGCGCTCAGCCCGCCAGAGGGGCAAGATGTGCAATCTGAGGATCG
387 ACCCACGAAACGAGCGTGCAGGCGCTCAGCCCGCCAGAGGGACAAGATACGCAAGCCGAGGATCG
** * *
1407166 GTCGGGTCCCCCCTACGTACTGCCGATCCTGCTACCACAACCTTCGATCCGGTCTGATCTTAGAC
452 ACCGGGTCCCCCCTACGTACTACCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGAC
*
1407231 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGAACGGGCGGGCATTTGAAAA
517 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAACGGGCGGGCATTTGAAAA
* *
1407295 AAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACT
1 AAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACT
* * *
1407360 GGCAGCAAACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
66 GGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * * * *
1407425 GATAAGGGGCCAATATATGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCACACCGCCC-
130 GATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCA
* * * * *
1407489 TGC-C-CCCCCAATGCTGCCGGTCAGGGTCTCTAACGATGCTCCGGCGATGGTGGCCCAAGC-AA
195 T-CACGACCCCAATGCCGCCGGTCAGGGTCTCCAACAATGCTCCGACGATGGT-GCCCAAGCTAA
* *
1407551 AAAAAAATGTGGCACCAAG-ACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTTGGTCTGGTC
258 AAAAAAATGTGGCACC-AGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTC
*
1407615 TGATCTTACACTGGGAATGAAATCCATATGCTTAGACTACGAATAAACTCCATATGCCTAAGTCA
322 TGATCTTACACTGGGAATGAAATCCATATGCTTAAACTACGAATAAACTCCATATGCCTAAGTCA
* * * * * *
1407680 ACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGACAGGATACGCAAGCCG-GTGATC
387 ACCCACGAAACGAGCGTGCAGGCGCTCAGCCCGCCAGAGGGACAAGATACGCAAGCCGAG-GATC
** * * * ** *
1407744 GACCTTGTCCCCCCTACGTGCTACCGATCTTGCTGCCGTAGCCCTCGATCCGGTCTGATCTTAGA
451 GACCGGGTCCCCCCTACGTACTACCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGA
* **
1407809 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
516 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAACGGGCGGGCA
1407866 CTACGTCGGC
Statistics
Matches: 498, Mismatches: 68, Indels: 15
0.86 0.12 0.03
Matches are distributed among these distances:
578 1 0.00
579 308 0.62
580 8 0.02
582 1 0.00
583 1 0.00
584 94 0.19
585 85 0.17
ACGTcount: A:0.26, C:0.27, G:0.25, T:0.22
Consensus pattern (580 bp):
AAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACT
GGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
ATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCAT
CACGACCCCAATGCCGCCGGTCAGGGTCTCCAACAATGCTCCGACGATGGTGCCCAAGCTAAAAA
AAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTCTGAT
CTTACACTGGGAATGAAATCCATATGCTTAAACTACGAATAAACTCCATATGCCTAAGTCAACCC
ACGAAACGAGCGTGCAGGCGCTCAGCCCGCCAGAGGGACAAGATACGCAAGCCGAGGATCGACCG
GGTCCCCCCTACGTACTACCGATCCTGCTACCACAACCCTCGATCCGGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAACGGGCGGGCATTTGAAAA
Found at i:1408542 original size:26 final size:26
Alignment explanation
Indices: 1408513--1408565 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1408503 CCATTCCGAT
1408513 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
1408539 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
1408565 C
1 C
1408566 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:1408994 original size:873 final size:883
Alignment explanation
Indices: 1407295--1409277 Score: 2658
Period size: 873 Copynumber: 2.3 Consensus size: 883
1407285 CATTTGAAAA
* *
1407295 AAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTGTAATGGCTAC
1 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGA-ACACTTTAATGGCTAC
*
1407359 TGGCAGCAAACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
65 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * * *
1407424 GGATAAGGGGCCAATATATGGGCCAAGTACTAGCACCCATTGCACATCATGTGCGCA--CACCGC
130 GGAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACCCCCCGC
* * * * *
1407487 CCTGCC---C-C----CCCAATGCTGCCGGTCAGGGTCTCTAACGATGCTCCGGCGATGGTGGCC
194 CC-CCCAATCGCGGAACCCAATGCCGTCGGTCAGGGTCTCTAACGATGCTCCGGCGATGATGCCC
*
1407544 CAAGCAAAAAAAAATGTGGCACCAAGACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTTGGT
258 CAAGCAAAAAAAAATGTGGCACCAAGACATGCCCAAGCCCAGCATGTGCACCCACAACCCTTGGT
** *
1407609 CTGGTCTGATCTTACACTGGGAATGAAATCCATATGCTTAGACTACGAATAAACTCCATATGCCT
323 CCAGTCCGATCTTACACTGGGAATGAAATCCATATGCTTAGACTACGAATAAACTCCATATGCCT
** * * * * *
1407674 AAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGACAGGATACGCAAGCCGG
388 AAGTCAACCCACAAAACGAGCATACGGGCGCTCAGTCGGCCAAAGGGACAGGATACGCAAGCAGG
* ** *
1407739 TGATCGACCTTGTCCCCCCTACGTGCTACCGATCTTGCTGCCGTAGCCCTCGATCCGGTCTGATC
453 GGATCGACCGGGTCCCCCCTA-GTGCT--CGA-CTTGCT-CCG-AGACCTCGATCC-G-CTGATC
1407804 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
510 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTA
* *
1407869 CGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGATCGTAGGTGGGTTTAGGCACA
575 CGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGATCGTAGGTGGGTTTAGGCACA
* *
1407934 TCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTAA
640 TCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTCAA
* * * *
1407999 GCCTTCATGTGAAGTTTCACGGCAAGACGACTCATTTTTTATTTTTTACGTTTTTTGAAACTTTT
705 GCCTTCATGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTT
* * *** *
1408064 TACGGTTCAAGATTTTTTTAAAATTTTTTTCAGAATGAGTTTTGGCCCGACACTTGGTAGACACG
770 TACGGTTCAAGATTTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCAAAAAACTTGGTAGACACG
* * *
1408129 ATCCTTGTATTTTTTTTGGCAAGCGCAAAAGAATTCAGCTAAAAACTCG
835 ATCCTTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCG
* * * *
1408178 AAGTGTACAGGATTTTGAGGCCATTTGAAAAAAGTGTCCCTATTTCGAACACTTTAATTGCTACT
1 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACT
* *
1408243 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGACGAGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
1408308 GATAGGGGCCCAAAATAAAGTCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACCCCCCGCC
131 GATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACCCCCCGCC
* **
1408373 CCCCAATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGATGCCC
195 CCCCAATCG-CGG-AACCCAATGCCGTCGGTCAGGGTCTCTAACGATGCTCCGGCGATGATGCCC
** * * * *
1408438 CGGGCGAAAAAAAATGTGGCACC-AGTACATGCTCGAGCCTAGCATGTGCACCCACAACCCTTGG
258 CAAGCAAAAAAAAATGTGGCACCAAG-ACATGCCCAAGCCCAGCATGTGCACCCACAACCCTTGG
* * * ** * * *
1408502 TCCATTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCC
322 TCCAGTCCGATCTTACACTGGGAATGAAATCCATATGCTTAGACTACGAATAAACTCCATATGCC
* *** * *
1408567 TAAGTCAACCCACAAAATGAGCATACGGGCGCTCAGTCGGCCAAAGGGGTGGGATGCGCAAGTAG
387 TAAGTCAACCCACAAAACGAGCATACGGGCGCTCAGTCGGCCAAAGGGACAGGATACGCAAGCAG
* * *
1408632 GGGATCGATCGGGTCTCCCCCT-GTG-T-G-C-TG-T-C-A-ATCT-GAT-C-C-GATCTTTGAC
452 GGGATCGACCGGGTC-CCCCCTAGTGCTCGACTTGCTCCGAGACCTCGATCCGCTGATCTTAGAC
*
1408684 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCCAG
516 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCAG
* * * *
1408749 CTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA-GTGGGTTTAGGCACATCTTCA
581 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAAGATCGTAGGTGGGTTTAGGCACATCTTCA
* *
1408813 TATTTCTACCATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTCAAGCCTTC
646 TATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTCAAGCCTTC
* *
1408878 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGT
711 ATGTGAAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGT
* *
1408943 TCAGGA-TTTTTTAAAAATTTTTTCA-ATAGGAGTTTTGGTCAAAAAACTTGGTAGACAGGATCC
776 TCAAGATTTTTTTAAAAATTTTTTCAGA-AGGAGTTTTGG-CAAAAAACTTGGTAGACACGATCC
*
1409006 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
839 TTGTATTTTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCG
1409051 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-GAAACACTTTAATGGCTAC
1 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCG-AACACTTTAATGGCTAC
* * *
1409115 TGGCAGCAAAGCTATAAAATCTCAAATGCTCTTT-AGGGGGTGTGAGTTATCGAGGTTTGATGAG
65 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
1409179 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGTGTGTGCACACCCCCC
130 GGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC-T-TGTGCGCA--CCCC
1409244 CCGCCCCCCAATCGCTGGAACCCCAATGCCGTCG
190 CCGCCCCCCAATCGC-GGAA-CCCAATGCCGTCG
1409278 ATCCAGTCTG
Statistics
Matches: 969, Mismatches: 105, Indels: 59
0.86 0.09 0.05
Matches are distributed among these distances:
871 1 0.00
872 96 0.10
873 301 0.31
874 117 0.12
875 4 0.00
876 33 0.03
878 1 0.00
879 3 0.00
880 2 0.00
881 1 0.00
882 5 0.01
883 163 0.17
884 3 0.00
885 8 0.01
886 2 0.00
887 2 0.00
889 2 0.00
892 1 0.00
893 5 0.01
894 213 0.22
895 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGAACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCGCACCCCCCGCCC
CCCAATCGCGGAACCCAATGCCGTCGGTCAGGGTCTCTAACGATGCTCCGGCGATGATGCCCCAA
GCAAAAAAAAATGTGGCACCAAGACATGCCCAAGCCCAGCATGTGCACCCACAACCCTTGGTCCA
GTCCGATCTTACACTGGGAATGAAATCCATATGCTTAGACTACGAATAAACTCCATATGCCTAAG
TCAACCCACAAAACGAGCATACGGGCGCTCAGTCGGCCAAAGGGACAGGATACGCAAGCAGGGGA
TCGACCGGGTCCCCCCTAGTGCTCGACTTGCTCCGAGACCTCGATCCGCTGATCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGA
GAGGCGGGATGCGCAAGCCGTGGATCGATAAGATCGTAGGTGGGTTTAGGCACATCTTCATATTT
CTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTCAAGCCTTCATGTG
AAGTTTCACGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAAG
ATTTTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCAAAAAACTTGGTAGACACGATCCTTGTATT
TTTGTTGGCAAGCACAAAAAAATTCAGCTAAAAACTCG
Found at i:1409853 original size:613 final size:613
Alignment explanation
Indices: 1408674--1409887 Score: 1875
Period size: 613 Copynumber: 2.0 Consensus size: 613
1408664 AATCTGATCC
* * **
1408674 GATCTTTGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACAAGCGGGCGGGCGGGC
* * *
1408739 ACTACGCCAGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTGGGTTTAGGC
66 ACTACACCAGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTGGGTTTAGGC
* * *
1408804 ACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCT
131 ACATCTTCATATTTCTACCATGCCAATGCCATTTATATGGCTTGTAAACTCATACAATGGTCCCT
*
1408869 CAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
196 CAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACG
* * *
1408934 TTTTACGGTTCAGGATTTTTTAAAAATTTTTTCAATAGGAGTTTTGGTCAAAAAACTTGGTAGAC
261 TTTTACGATTCAGGATTTTTTAAAAATTTTTTCAATAGGAGTTTTGGTCAAAAAACCTAGTAGAC
*
1408999 AGGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
326 AGGATCCTTGAATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
* * * *
1409064 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAAACACTTTAATGGCTACTGGCAGCAAAGCTA
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGACAGCAAACCCA
1409129 TAAAATCTCAAATGCTCTTTAGGGGGTGTGAGTTATCGAGGTTTGATGAGGGATAGGGGGCCAAT
456 TAAAATCTCAAATGCTCTTTAGGGGGTGTGAGTTATCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
1409194 ATAAGGGCCAAGTACCAGCACCCATCGCACATCGTGTGTGCACAC-CCCCCCCG-CCCCCCAATC
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATC--ATGTGCACACACCCCCCCGTCCCCCCAATC
* **
1409257 GCTGGAACCCCAATGCCGTCGATCCAGTCT
584 ACCAGAACCCCAATGCCGTCGATCCAGTCT
* * * *
1409287 GATCTTAGACTGGGAATGATCTCCGTATGCCTAAACCCACCGATGAAACAAGCGGGCGGGTGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACAAGCGGGCGGGCGGGC
** * * *
1409352 ACTACACTGGTTGGAGAGACGAGATGCGCAAGCCGTGGATTGATAGGGT-GTAGGTGGGTTTAGG
66 ACTACACCAGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTA-GTGGGTTTAGG
**
1409416 CACATCTTCATATTTCTGTCATGCCAATGCCATTTATATGGCTTGTAAACTCATACAATGGTCCC
130 CACATCTTCATATTTCTACCATGCCAATGCCATTTATATGGCTTGTAAACTCATACAATGGTCCC
* * * *
1409481 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTTACGATTTTTGAAAC
195 TCAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAAC
* *** * *
1409546 GTTTTACGATTC-GAGATTTTTTTAAAATTTTTTCAGA-AGGAGTTTT-GTCCGCACACCTATTA
260 GTTTTACGATTCAG-GATTTTTTAAAAATTTTTTCA-ATAGGAGTTTTGGTCAAAAAACCTAGTA
*
1409608 GAC-GTGATCCTTGAATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
323 GACAG-GATCCTTGAATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
1409672 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGACAGCAAA
387 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGACAGCAAA
* * *
1409737 CCCCTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
452 CCCATAAAATCTCAAATGCTCTTT-AGGGGGTGTGAGTTATCGAGGTTTGATGAGGGATAGGGGG
*
1409802 CCAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGTCCCCCCA
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGTCCCCCCA
1409867 ATCACCAGAACCCCAATGCCG
581 ATCACCAGAACCCCAATGCCG
1409888 CTGGTCAGGT
Statistics
Matches: 545, Mismatches: 49, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
611 10 0.02
612 165 0.30
613 369 0.68
614 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.28
Consensus pattern (613 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACAAGCGGGCGGGCGGGC
ACTACACCAGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTGGGTTTAGGC
ACATCTTCATATTTCTACCATGCCAATGCCATTTATATGGCTTGTAAACTCATACAATGGTCCCT
CAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACG
TTTTACGATTCAGGATTTTTTAAAAATTTTTTCAATAGGAGTTTTGGTCAAAAAACCTAGTAGAC
AGGATCCTTGAATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGACAGCAAACCCA
TAAAATCTCAAATGCTCTTTAGGGGGTGTGAGTTATCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGTCCCCCCAATCAC
CAGAACCCCAATGCCGTCGATCCAGTCT
Found at i:1411768 original size:26 final size:26
Alignment explanation
Indices: 1411739--1411788 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1411729 CCGATCCAAT
**
1411739 CTTACACTGGGAATGAACTCCGTAAG
1 CTTACACTGGGAACAAACTCCGTAAG
*
1411765 CTTAGACTGGGAACAAACTCCGTA
1 CTTACACTGGGAACAAACTCCGTA
1411789 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.32, C:0.24, G:0.22, T:0.22
Consensus pattern (26 bp):
CTTACACTGGGAACAAACTCCGTAAG
Found at i:1412974 original size:895 final size:892
Alignment explanation
Indices: 1409288--1415163 Score: 7628
Period size: 895 Copynumber: 6.6 Consensus size: 892
1409278 ATCCAGTCTG
* * * * * *
1409288 ATCTTAGACTGGGAATGATCTCCGTATGCCTAAACCCACCGATGAAACAAGCGGGCGGGTGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* *** * * *
1409353 CTACACTGGTTGGAGAGACGAGATGCGCAAGCCGTGGATTGATAGGGT-GTAGGTGGGTTTAGGC
66 CTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
1409417 ACATCTTCATATTTCTG-TCATGCCAATGCCATTTATATGGCTTGTAAACTCATACAATGGTCCC
131 ACATCTTCATATTTCTGAT-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
1409481 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTTACGATTTTTGAAAC
195 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * * * * **
1409546 GTTTTACGATTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGTC-CGCACACCTATTAGA
260 TTTTTACGGTTCGGGATTTTTTTAAAA-TTTTTCAGAAGGATTTTTGGCTC-CAAACTTGGTAGA
*
1409610 CGTGATCCTTGAATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
323 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
* * *
1409675 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGACAGCAAACCC
388 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
1409740 CTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
453 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
1409805 ATGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGTCCCCCCAATC
518 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCG-CCCCCCAATC
* * * * * * **
1409870 ACCAGAACCCCAATGCCGCTGGTCAGGTTCTCCAACGATGCTCCGGCAATGGTGCCCCAGGTGAA
581 ATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAA
* * * * *
1409935 AAAAAATGCGGCACCAGCATATGCCCGAGCCCAACATCTGCACCCACTACCC---T-TGGT-TG-
646 AAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTTGTCTGGTCTGA
* * **
1409994 -GAT-C-C----AAT---CT---TA--C----ACTGGGAAAGTTCTCCGTATGCCTAAGTCAACC
711 TCATACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * ** * *
1410040 CACGAAATGAGCGTGCGGGCGTTCAGTCGGCCAGAGGGGCAGGATATGCAAGTCGGGGATCAATC
776 CATGAAACGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAACC
** * * * * * ** * *
1410105 GGGTCCCCCCCTGTGTTCTGCAAATCTTGCTGCCACAACCCTCAGTTCGGTCCG
841 GGGT-CCCCCCTACGTGCTGC-GATCCTACTACTGCAACCCTCAGTCCGGTCCA
* * **
1410159 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGAACA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* ** * * ** *
1410224 ATACGTCGGCCAGAGAGACGAGATGCGCAAGCTATGGATCGATAGGGTGGTAGGTGAGTTTAGGC
66 CTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
1410289 ACATCTTCATATTTCT-ACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 ACATCTTCATATTTCTGA-TATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * **
1410353 TCAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTAATTTTCATGATTTTCAAAAC
195 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * *
1410418 TTTTTACGGTTCGAGATTTTTTTAAATTTTTTTCAGAAGGATTTTTAGC-CACACAA-TTGGTAG
260 TTTTTACGGTTCGGGATTTTTTTAAA-ATTTTTCAGAAGGATTTTTGGCTC-CA-AACTTGGTAG
*
1410481 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
322 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
** * *
1410546 ATTTTGTGGTCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACAGGCAGCAAACC
387 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
1410611 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCA
452 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * * *
1410676 AATATAAGGG-CAAGTGCCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCTCCTAATCG
517 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCAATCA
* * ** **
1410740 TTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCT-CGGACGATGGTGCCCTTGGCGAA
582 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGG-CGATGGTGCCCCGGGC-AA
* * * **
1410804 AATAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGTGCCCACAACCC---TC--G---G
645 AAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTTGTCTGGTCTG
* *
1410861 ----T---CT--G---G---TCCG-AT-CTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAAC
710 ATCATACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** * * * **
1410909 CCACGAAACGAGTGTGCGGGCGCTCAGCAGGCCAGAGGGGAAGGATGCACAAGCGGGGGATCAGT
775 CCATGAAACGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAAC
* ** * ** ** * *
1410974 CGGGTCCCCCCTGCGTGCTGCCGATATTGCTGTTGCAACCCTTGGTCCGATCTA
840 CGGGTCCCCCCTACGTGCTG-CGATCCTACTACTGCAACCCTCAGTCCGGTCCA
* * *
1411028 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* *
1411093 CTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* ** * * * *
1411158 ACATCTTCATATTTTTGCCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATCGTTCTT
131 ACATCTTCATATTTCTGATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* **
1411223 TAAGCCTTCATTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTGGATGATTTTTGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* ** * * *
1411288 TTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGCGTTTTGGCTCCAAACTTAGTATACA
261 TTTTACGGTTCGGGATTTTTTTAAAA-TTTTTCAGAAGGATTTTTGGCTCCAAACTTGGTAGACG
* * *
1411353 TGATCCTTGTACTTTTGTTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAGGATT
325 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
* *
1411418 TTGTGACCATTTG-AAAAAGTGTCCCCATTTCAAACACTTTAATGGTTACTGGCAGCAAACCTGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
1411482 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTTGAGGTTTGACGAGGGATAGGGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* ** *
1411547 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCGTACACCCCCCG-CCCCCAATCGTCG
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCAATCATCG
* ** * * *
1411611 GAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGCTCCGAAGATGGTGCCCCGAGCGAAAAAG
585 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAAAAAA
* ** * * * * * * ** *
1411676 AATACGGCACCAGCACATGCCTGAGCATAGCTTGTGCACCCATAGCCCTCGATCCGATCCAATCT
650 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTTG-TCTGGTCTGATCA
* **
1411741 TACACTGGGAATGAACTCCGTAAGCTTAGACTGGGAACAAACTCCGTATGCCTAAGTCAACCCAT
714 TACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
* * * * * * * ***
1411806 GAAACGAACGTGCAGGCACTCAGTCGGCCAGAGGGGCAGGATGTGCAAGCTGAGGATCGGTCGGG
779 GAAACGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAACCGGG
* ** * * **
1411871 TCCCCCCTACGTGTTGCCGATCCTACTACCACAACCCTTAGTCTGGTCTG
844 TCCCCCCTACGTGCTG-CGATCCTACTACTGCAACCCTCAGTCCGGTCCA
* * *
1411921 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGGAACGATCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
** *
1411986 CTATGCCGGCCAAAGAGGCGGGATGCG-AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
** *
1412050 ACATCTTCATATTTCTG-TCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATCATCCA
131 ACATCTTCATATTTCTGAT-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
1412114 TTAATCCTTAATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC
195 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * *
1412179 TTTTTATGGTTCGGGATTTTTTTAAAATTTTTCAGAAGGAGTTTTGGCACCAAACTTGGTAGATG
260 TTTTTACGGTTCGGGATTTTTTTAAAATTTTTCAGAAGGATTTTTGGCTCCAAACTTGGTAGACG
* ** * *
1412244 TGATCCTCGTATTTTTTTTGGTTTGCACAAAAAAATTTAGCTAAAAAATTC-AAGTGTACAGGAT
325 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAGGAT
* *
1412308 TTTGTGACCATTTGAAAAACGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
1412373 TAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
*
1412438 TATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCACACACCCCCTCGCCCCCCAATCAT
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCC-CGCCCCCCAATCAT
* * * * * *
1412503 CGAAACCCCAATGCCACCTGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCTGGGCAAAAA
583 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGC-AAAA
* *
1412568 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTATGTCTGGTCTGA
647 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCT-TGTCTGGTCTGA
*
1412633 TCATACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACC
711 TCATACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
1412698 CATGAAACGAGCGTGCGGGCACTCAATTGGGCAGAGGGGCAGGATGCGCAAGCCGGGGATCAACC
776 CATGAAACGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAACC
* * **
1412763 GGGTCCCCCCTACATGCTGTCGATCCTACTACTGCACCCCTCAGTTTGGTCCA
841 GGGTCCCCCCTACGTGCTG-CGATCCTACTACTGCAACCCTCAGTCCGGTCCA
*
1412816 ATCTTAGACTGGGAATGAACTCGGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
*
1412881 CTACACCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGT-GTAGGTGGGTTTAGGC
66 CTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * *
1412945 ACATCTTCATATTTATGATATGACAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCT
131 ACATCTTCATATTTCTGATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
1413010 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACT
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * *
1413075 TTTTATGGTTCGGGATTTTTTTAAAATTCTTTCAGATGGATTTTTCGCTCCAAACTTGGTAGACG
261 TTTTACGGTTCGGGATTTTTTTAAAATT-TTTCAGAAGGATTTTTGGCTCCAAACTTGGTAGACG
* ** * *
1413140 TGATCCTTGTATTTTTGTTCACATGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATT
325 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
* * *
1413205 TTGTGA-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACTTCT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
1413269 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
1413334 ATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACACCACCCCTCCCCCCCAATCGT
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACC-CCCC-GCCCCCCAATCAT
* * * *
1413399 CCGAACCCCAATGCCGCCGGTCAGGTTTTCCGACGATGCTCCGACGATGGTGCCCCAGGCAAAAA
583 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAAAA
* *
1413464 AAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCACCCGA-AACCCTTGGTCCGGTCTGA
648 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC-ACAACCCTT-GTCTGGTCTGA
* * *
1413528 TCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
711 TCATACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * *
1413593 CAAGAAATGAACGTGCAGGCGCTCAGCTGACCAGAGGGGCAGGATGC-CTAAGCCAGGGATCGAC
776 CATGAAACGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGCAGGATGCGC-AAGCCGGGGATCAAC
* * * * * * **
1413657 CGGGTTCCCCCCTGCATGCTGCTGATCTTGCTACTGCAACTCTCGGTCCGGTCTG
840 CGGG-TCCCCCCTACGTGCTGC-GATCCTACTACTGCAACCCTCAGTCCGGTCCA
* * * * *
1413712 ATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGGAACAAGCGAGCGGGCAGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * * * *
1413777 CTACACCAGCTAGAGAGACGGGATGCCCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGC
66 CTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* ** * * * *
1413842 ACATCTTCATATTTATGCCATCCCAATGCCATTTTTATGGCTTCTAAATTCATATAGTGGTCCCT
131 ACATCTTCATATTTCTGATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
1413907 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA-CATTTTTTAAAAC
196 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTTGAAAC
* * * * *
1413971 TTTTTACGATTCGGGATTTTTTAAAAATTTTTCAGAAGGTTTTTTGGCCCCAAACTTGGTAGACA
260 TTTTTACGGTTCGGGATTTTTTTAAAATTTTTCAGAAGGATTTTTGGCTCCAAACTTGGTAGACG
* *
1414036 TGATCCTTGTATTTTTTTTGGCATGTACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAGGATT
325 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATT
* *
1414101 TTGTGACCATTTCAAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
1414166 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
1414231 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCACACACCCCCCCCGCCCCCAATCAT
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGC-CCCCCAATCAT
* * * *
1414296 CGGAACCCGAATGCCGCCTGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGGGCAAAAA
583 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAAAA
* * *
1414361 AAAATTATGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTATGTCTAGTCTGA
648 AAAA-TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCT-TGTCTGGTCTGA
1414426 TCATACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
711 TCATACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
1414491 CATGAAACGAGCGTGCGGGCGCTC-GATTGGGCATAGGGGCAGGATGCGCAAGTCGGGGATCAAC
776 CATGAAACGAGCGTGCGGGCGCTCAG-TTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAAC
* * * *
1414555 CAGGTCCCCCCTACGTGCTGTCGATCCTACTA-TCGCACCCCTCGGTCTGGTCCA
840 CGGGTCCCCCCTACGTGCTG-CGATCCTACTACT-GCAACCCTCAGTCCGGTCCA
* *
1414609 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGAGCAGGCGAGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-G-GCGGGCG
*
1414674 GGCACTACACCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
62 GGCACTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* **
1414739 AGGCACATCTTCATATTTTTGATATGAAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
127 AGGCACATCTTCATATTTCTGATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
1414804 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
192 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * **
1414869 AACTTTTTACGGTTCGAGATTTTTTTAAAATTCTTTCAGATGGATTTTTCACTCCAAACTTGGTA
257 AACTTTTTACGGTTCGGGATTTTTTTAAAATT-TTTCAGAAGGATTTTTGGCTCCAAACTTGGTA
* ** * *
1414934 GACGTGATCCTTGTATTTTTGTTCACATGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTACAG
321 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
1414999 GATTTTGTGA-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
386 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
1415063 TTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGAC
451 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
1415128 CAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
516 CAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
1415164 TATGCCTAAG
Statistics
Matches: 4382, Mismatches: 535, Indels: 147
0.87 0.11 0.03
Matches are distributed among these distances:
863 1 0.00
864 1 0.00
865 2 0.00
866 1 0.00
867 43 0.01
868 175 0.04
869 486 0.11
870 141 0.03
871 129 0.03
872 372 0.08
873 1 0.00
880 1 0.00
883 2 0.00
885 1 0.00
888 1 0.00
891 98 0.02
892 340 0.08
893 211 0.05
894 63 0.01
895 802 0.18
896 409 0.09
897 322 0.07
898 321 0.07
899 3 0.00
900 145 0.03
901 216 0.05
902 95 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
CTACACCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
TTTTACGGTTCGGGATTTTTTTAAAATTTTTCAGAAGGATTTTTGGCTCCAAACTTGGTAGACGT
GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCGCCCCCCAATCATCGG
AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAA
ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTTGTCTGGTCTGATCATA
CACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
AACGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAACCGGGTC
CCCCCTACGTGCTGCGATCCTACTACTGCAACCCTCAGTCCGGTCCA
Found at i:1413565 original size:26 final size:26
Alignment explanation
Indices: 1413529--1413581 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1413519 CCGGTCTGAT
1413529 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
1413555 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
1413581 C
1 C
1413582 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:1416027 original size:26 final size:26
Alignment explanation
Indices: 1415991--1416069 Score: 142
Period size: 26 Copynumber: 3.0 Consensus size: 26
1415981 TTGGTCTGAT
1415991 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1416017 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1416043 CTTAGACTGAGG-ATGAACTCCGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
1416069 C
1 C
1416070 CTAAGTTAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
26 50 0.96
27 2 0.04
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1416922 original size:26 final size:26
Alignment explanation
Indices: 1416893--1416945 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1416883 CCGGTCCGAT
1416893 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1416919 CTTAGACTGGGTATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1416945 C
1 C
1416946 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1423951 original size:159 final size:155
Alignment explanation
Indices: 1423523--1424061 Score: 456
Period size: 158 Copynumber: 3.4 Consensus size: 155
1423513 AACTCCATAT
* * *
1423523 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTGCGGGTGCTCA-
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
1423587 ACAGGTTTAAAAGGCAGAGTGCGTAAGTCGAGGATC-GATCTGGTCCCCCCTACGCGCTATCGAT
66 CCA-G-TGAAGAGGCAGAATGCGTAAGTCGAGGATCGGATC-GGTCCCCCCTGCGTGCT-GCTAT
* * *
1423651 CCTGCTATCGCAACCCTCAGTCCAGTCCGA
127 CCTGCTACCGCAACCCTCGGTCC-GTCTGA
* * * * * * * * *
1423681 TCTTAGA-TTGGAATTGAACTCCATATGCATAAGTCAACCCACGAAATGAGCTTGCGGGCGTTGA
1 GCTTAGACATGGAA-TGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* ** * * **
1423745 GCCAGTCGAAGAGGCATAATGCGTAACCCAAGGATTGGCCCGGTCCCCCTCTGCGTGCTGCCTAT
65 GCCAGT-GAAGAGGCAGAATGCGTAAGTCGAGGATCGGATCGGTCCCCC-CTGCGTGCTG-CTAT
** ** * *
1423810 CCCACTACCATAACCCTCGGTTCGGCTGA
127 CCTGCTACCGCAACCCTCGGTCCGTCTGA
* * *
1423839 GGCTTAGACATGGAATGAACTCCCTATGCCCAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
1 -GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * *
1423904 GCCAGCTGAAGAGGTAGAATGCGCAAGTCGAGGATCGGTTCGGTCCCCCCTGCATGCTGCTAATC
65 GCCAG-TGAAGAGGCAGAATGCGTAAGTCGAGGATCGGATCGGTCCCCCCTGCGTGCTGCT-ATC
* *
1423969 CTGCTGCTGCAACCCTCGGTCCGATCTGA
128 CTGCTACCGCAACCCTCGGTCCG-TCTGA
* * ** * * *
1423998 TCTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTTAACCCATGAAACGAGCGTGTGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
1424062 ACCGGCCGGA
Statistics
Matches: 298, Mismatches: 71, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
157 9 0.03
158 164 0.55
159 119 0.40
160 6 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (155 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCAGTGAAGAGGCAGAATGCGTAAGTCGAGGATCGGATCGGTCCCCCCTGCGTGCTGCTATCCTG
CTACCGCAACCCTCGGTCCGTCTGA
Found at i:1425483 original size:156 final size:159
Alignment explanation
Indices: 1425015--1425484 Score: 382
Period size: 158 Copynumber: 3.0 Consensus size: 159
1425005 ATGAACTCTG
* * * ** * * *
1425015 TATGCCTAAGCCAACCCACGAAATGAGCATACAGGTGCTCAGCCGGTCGGAGAGGCAGAATGCAG
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGCCGGAAAGGCAGAATGC-G
* * * * * * * * * ** * * * *
1425080 -AAGTCGGGGACCGGCTCGATCCCCC-TTGTGTGCTATCGATCTTACTACCGCAACCCTCGGTTT
65 CAAGCCGGGAATCGGCCCAATCCCCCACTGCGTACTACCGATCCCACTGCCACAACCCTCAGTCT
* * *
1425143 GGTCCGATCTTAGACTGCGAATGAACTTCG
130 GATCCGATCTTAGACTGGGAATGAACTTCC
* * * * * *
1425173 TATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGCATTGAGCCAGCTGGAAAGGCATAATGCGC
1 TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGCCGGAAAGGCAGAATGCGC
** * * * *
1425238 AAGCCGGGAATCGGCCCGGTCCCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCAGTCCG
66 AAGCCGGGAATCGGCCCAATCCCCCACTGCGTACTACCGATCCCACTGCCACAACCCTCAGTCTG
* ** *
1425303 A-CTAGGGCTTAAACAT-GGAATGAACTTCC
131 ATC-CGATCTTAGAC-TGGGAATGAACTTCC
* * * *
1425332 TATGCCTAAGCCAACCCATGAAAC-AGGCGTGCGGGCGCTCAGCC-GACCGG-AGGGCAGAATGC
1 TATGCCTAAGCCAACCCACGAAACGA-GCGTGCAGGCACTCAGCCAG-CCGGAAAGGCAGAATGC
* * * *
1425394 GTAAGCCGGGGATCGGCCCAAT-CCCCACTGC-TACTACCGATCCTACTGTCACAACCCTCAGTC
64 GCAAGCCGGGAATCGGCCCAATCCCCCACTGCGTACTACCGATCCCACTGCCACAACCCTCAGTC
1425457 TGATCCGATCTTAGACTGGGAATGAACT
129 TGATCCGATCTTAGACTGGGAATGAACT
1425485 CTGTATACTT
Statistics
Matches: 244, Mismatches: 60, Indels: 18
0.76 0.19 0.06
Matches are distributed among these distances:
155 1 0.00
156 47 0.19
157 10 0.04
158 101 0.41
159 84 0.34
160 1 0.00
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.19
Consensus pattern (159 bp):
TATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCCAGCCGGAAAGGCAGAATGCGC
AAGCCGGGAATCGGCCCAATCCCCCACTGCGTACTACCGATCCCACTGCCACAACCCTCAGTCTG
ATCCGATCTTAGACTGGGAATGAACTTCC
Found at i:1425495 original size:26 final size:26
Alignment explanation
Indices: 1425466--1425516 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1425456 CTGATCCGAT
*
1425466 CTTAGACTGGGAATGAACTCTGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
*
1425492 CTTAGACTGGGGATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
1425517 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:1425874 original size:26 final size:26
Alignment explanation
Indices: 1425836--1425888 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1425826 CCGATCCGAT
*
1425836 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1425862 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1425888 C
1 C
1425889 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1427121 original size:26 final size:26
Alignment explanation
Indices: 1427071--1427122 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1427061 CCTCAAAATA
* *
1427071 TTAGACTTGGAATGAACTGCATATGC
1 TTAGACATGGAATGAACTCCATATGC
*
1427097 TTAGACATGGAATGAACTCCGTATGC
1 TTAGACATGGAATGAACTCCATATGC
1427123 CTAAGCGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACATGGAATGAACTCCATATGC
Found at i:1427545 original size:158 final size:158
Alignment explanation
Indices: 1427095--1427555 Score: 441
Period size: 157 Copynumber: 2.9 Consensus size: 158
1427085 AACTGCATAT
* * * *
1427095 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCGAACCTACGAAACGAACGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
1427160 TCGATCGGAGAGGCAGAATGCT-CAAGCCGGGGATCGGCTCGATCCCCCCTACATGCTGTCGATC
66 CCGGTCGGAGAGGCAGAATG-TGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATC
* * * *
1427224 CTGCTACCGCAACCCTCAGTCTGATCTAA
130 CTGCTGCCACAACCCTCAGTCTCAGCTAA
* * * * * *
1427253 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGCC-ACCAATGAAACGAGTGTACGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * *
1427316 GCTGGTCGAAAAGGCATAATGCGCAAGCCGGGGATTGGCTCGGTCCCCTCTGCGTGCTGACAG-T
65 GCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCT-ACCGAT
* * **
1427380 CCAGCTGCCACAACCTTCAGTC-CAGCTGGG
129 CCTGCTGCCACAACCCTCAGTCTCAGCT-AA
* * *
1427410 GCTTAGACATGGAATGAACTCCTTATGCCCAAGCCAACCCA-GAAAACGAGCGTGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACG-AAACGAGCGTGCGGGCGCTCA
* * * * *
1427474 ACCGGTCGGAGAGACAGAATGTGTAAGCCAGGGATCGAC-CTGGTCCCCCCTGCGTGCTACCGAT
65 GCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTC-GGTCCCCCCTGCGTGCTACCGAT
*
1427538 CTTGCTGCCACAACCCTC
129 CCTGCTGCCACAACCCTC
1427556 GATCTGGTCT
Statistics
Matches: 237, Mismatches: 57, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
156 3 0.01
157 120 0.51
158 114 0.48
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
CCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCC
TGCTGCCACAACCCTCAGTCTCAGCTAA
Found at i:1427573 original size:158 final size:158
Alignment explanation
Indices: 1427096--1427595 Score: 460
Period size: 158 Copynumber: 3.2 Consensus size: 158
1427086 ACTGCATATG
* * * *
1427096 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCGAACCTACGAAACGAACGTGCAGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAG
* * * * * **
1427160 TCGATCGGAGAGGCAGAATGCT-CAAGCCGGGGATCGGCTCGATCCCCCCTACATGCTGTCGATC
65 CCGGTCGGAGAGGCAGAATG-TGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATC
* * *
1427224 CTGCTACCGCAACCCTCAGTCTGATCTAAT
129 CTGCTGCCACAACCCTCAGTCTGGTCTAAT
* * * * *
1427254 CTTAGACTGGGAATGAACTCCGTATGCATAAGCC-ACCAATGAAACGAGTGTACGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
1427318 TGGTCGAAAAGGCATAATGCGCAAGCCGGGGATTGGCTCGGTCCCCTCTGCGTGCTGACAG-TCC
66 CGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCT-ACCGATCC
* * ** ***
1427382 AGCTGCCACAACCTTCAGTCCAG-CTGGGG
130 TGCTGCCACAACCCTCAGTCTGGTCT-AAT
* * *
1427411 CTTAGACAT-GGAATGAACTCCTTATGCCCAAGCCAACCCA-GAAAACGAGCGTGCGGGCGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCAACG-AAACGAGCGTGCGGGCGCTCA
* * * * *
1427474 ACCGGTCGGAGAGACAGAATGTGTAAGCCAGGGATCGAC-CTGGTCCCCCCTGCGTGCTACCGAT
64 GCCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTC-GGTCCCCCCTGCGTGCTACCGAT
* *
1427538 CTTGCTGCCACAACCCTC-GATCTGGTCTTAT
128 CCTGCTGCCACAACCCTCAG-TCTGGTCTAAT
*
1427569 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
1427596 TTAGACTGGG
Statistics
Matches: 266, Mismatches: 64, Indels: 24
0.75 0.18 0.07
Matches are distributed among these distances:
156 2 0.01
157 122 0.46
158 140 0.53
159 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGGCTCGGTCCCCCCTGCGTGCTACCGATCCT
GCTGCCACAACCCTCAGTCTGGTCTAAT
Found at i:1427598 original size:26 final size:26
Alignment explanation
Indices: 1427569--1427621 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1427559 CTGGTCTTAT
1427569 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
1427595 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
1427621 C
1 C
1427622 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:1427966 original size:26 final size:26
Alignment explanation
Indices: 1427937--1427989 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1427927 CCAGTCTGAT
*
1427937 CTTAGACT-AGGAATGAACTCTGTATG
1 CTTAGACTGAGG-ATGAACTCCGTATG
1427963 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATGAACTCCGTATG
1427989 C
1 C
1427990 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGGATGAACTCCGTATG
Found at i:1428060 original size:368 final size:368
Alignment explanation
Indices: 1427378--1428100 Score: 864
Period size: 368 Copynumber: 2.0 Consensus size: 368
1427368 CGTGCTGACA
* * * *
1427378 GTCCAGCTGCCACAACCTTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCTTATGCCCAAG
1 GTCCAGCTGCCACAACCCTCAGTCCAGCTGAGGCTTAGACATCGAATGAACTCCCTATGCCCAAG
* * * * *
1427443 CCAACCCAGAAAACGAGCGTGCGGGCGCTCAACCGGTCGGAGAGACAGAATGTGTAAGCCAGGGA
66 CCAACCCAGAAAACGAGCGTGCGGGCACTCAACCGGTCGGAAAGACAAAAAGCGTAAGCCAGGGA
* * * * ** *
1427508 TCGACCTGGTCCCCCCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGATCTGGTCTTATCTTA
131 TCGACCCGGTCCCCCATGCATGCTACCGATCCTGCTGCCACAACCCTCGATCCAGTCTGATCTTA
* * * *
1427573 GACTGGGAATGAACTCTGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACTCACAA
196 GACTAGGAATGAACTCTGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACAA
* * * *
1427638 AACGAGCGTTCGGGCACTCAACCGGCCTGGGCAGCCGATCGGAAAGGCATAATGCACAAGCCAAG
261 AACAAGCGTGCGGGCACCCAACCGACCTGGGCAGCCGATCGGAAAGGCATAATGCACAAGCCAAG
* * *
1427703 GATCAG-CTCGATCCTCTTTTGCGTGCTACCGATCCCACTGTCG
326 GATCAGTC-CGATCCCCCTCTGCGTGCTACCGATCCCACTGTCG
* *
1427746 GTCCTGCTGCCACAACCCTCAGTCCAGCTGAGGCTTAGACATCGAATGAACTCCCTATGCCTAAG
1 GTCCAGCTGCCACAACCCTCAGTCCAGCTGAGGCTTAGACATCGAATGAACTCCCTATGCCCAAG
* * * * * *
1427811 CCAACCCACGAAATA-G-GCGTGCGGGCACTCAGCTGGTTGGAAAGGCAAAAAGCGTAAGTCGGG
66 CCAACCCA-GAAA-ACGAGCGTGCGGGCACTCAACCGGTCGGAAAGACAAAAAGCGTAAGCCAGG
* * * * ** * *
1427874 GATCGGCCCGGTCCCCCATGCATGCTGCCGATCCTGTTGTCGGAACCTTCGGTCCAGTCTGATCT
129 GATCGACCCGGTCCCCCATGCATGCTACCGATCCTGCTGCCACAACCCTCGATCCAGTCTGATCT
*
1427939 TAGACTAGGAATGAACTCTGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCAT
194 TAGACTAGGAATGAACTCTGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * *
1428004 GAAACAAGTGTGCGGGCTCCCAACCGACC-GGAG-AGGCTG-GCTGGAGAGGCATAATGCGCAAG
259 AAAACAAGCGTGCGGGCACCCAACCGACCTGG-GCA-GCCGATC-GGAAAGGCATAATGCACAAG
* **
1428066 TCGGGGATCAGTCCGATCCCCCTCTGCGTGCTACC
321 CCAAGGATCAGTCCGATCCCCCTCTGCGTGCTACC
1428101 ACAGCCCTCG
Statistics
Matches: 295, Mismatches: 54, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
367 4 0.01
368 284 0.96
369 6 0.02
370 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (368 bp):
GTCCAGCTGCCACAACCCTCAGTCCAGCTGAGGCTTAGACATCGAATGAACTCCCTATGCCCAAG
CCAACCCAGAAAACGAGCGTGCGGGCACTCAACCGGTCGGAAAGACAAAAAGCGTAAGCCAGGGA
TCGACCCGGTCCCCCATGCATGCTACCGATCCTGCTGCCACAACCCTCGATCCAGTCTGATCTTA
GACTAGGAATGAACTCTGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAACCCACAA
AACAAGCGTGCGGGCACCCAACCGACCTGGGCAGCCGATCGGAAAGGCATAATGCACAAGCCAAG
GATCAGTCCGATCCCCCTCTGCGTGCTACCGATCCCACTGTCG
Found at i:1428331 original size:26 final size:26
Alignment explanation
Indices: 1428293--1428345 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1428283 TCGATCTGAT
1428293 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1428319 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
1428345 C
1 C
1428346 CTAAGCCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1429019 original size:26 final size:26
Alignment explanation
Indices: 1428978--1429030 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1428968 CCGGTCCGAT
*
1428978 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
1429004 CTTAGACTAGGG-ATGAACTCTGTATG
1 CTTAGACT-GGGAATGAACTCTGTATG
1429030 C
1 C
1429031 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:1429905 original size:26 final size:26
Alignment explanation
Indices: 1429861--1429913 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
1429851 CTGGTCTGAT
*
1429861 CTTAGACTAGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATAAACTTC-GTATG
* *
1429887 CTTAGACTGGGGATAAACTTCGTATG
1 CTTAGACTAGGAATAAACTTCGTATG
1429913 C
1 C
1429914 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTTCGTATG
Found at i:1430944 original size:159 final size:159
Alignment explanation
Indices: 1430608--1431104 Score: 416
Period size: 159 Copynumber: 3.1 Consensus size: 159
1430598 AACTTTGTAT
* * * *
1430608 GCTTAGACATGTAATGAACTCCATATGCCTAAGCCAACACACGGAACGAGCGCGCGGGCGCTCAA
1 GCTTAGACATGTAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * ** * * * *
1430673 CCGGCTAGAGAGACAGAATGCGCATGTCGAGGATTGGCCCATTCCTCTCCTATGTGCTTTCGATC
66 CCACCGAGAGAGACAGAATGCGCAAGTCGAGGATCAGCCCATCCCCCTCCTACGTGCTGTCGATC
* **
1430738 TTGCTGTCGCAACCCTCAGTCTGGTCTGA
131 CTGCTACCGCAACCCTCAGTCTGGTCTGA
* * * * *
1430767 TCTTAGAC-TGGGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGA
1 GCTTAGACAT-GTAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* *
1430831 GCCTACCGA-AGAGGCATAATGCGCAAGTCG-GGAATCAGCCCGATCCCCCT-CTACGTGCTGTC
65 GCC-ACCGAGAGAGACAGAATGCGCAAGTCGAGG-ATCAGCCC-ATCCCCCTCCTACGTGCTGTC
* * * *
1430893 GGTCCTGCTACCGCAACCCTTAGTTTGG-CTGGG
127 GATCCTGCTACCGCAACCCTCAGTCTGGTCT-GA
* * * *
1430926 GCTTAGACATGTAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTCCGGACGCTCAG
1 GCTTAGACATGTAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * * * ** * *
1430991 CCCGACCG-GAAAGGTAGAATGCACAAGCCAAGGATCAGCCCGGT-CCCC-CCTGTGTGCTATCC
66 -CC-ACCGAGAGAGACAGAATGCGCAAGTCGAGGATCAGCCC-ATCCCCCTCCTACGTGCTGTCG
** * *
1431053 ATCCTGCTGTCGCAACTCTCAGTCTGGTCCGA
128 ATCCTGCTACCGCAACCCTCAGTCTGGTCTGA
* * *
1431085 TCTTAGACTTGGAATGAACT
1 GCTTAGACATGTAATGAACT
1431105 TTGTATGCTT
Statistics
Matches: 267, Mismatches: 60, Indels: 22
0.77 0.17 0.06
Matches are distributed among these distances:
158 5 0.02
159 219 0.82
160 41 0.15
161 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.21
Consensus pattern (159 bp):
GCTTAGACATGTAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCACCGAGAGAGACAGAATGCGCAAGTCGAGGATCAGCCCATCCCCCTCCTACGTGCTGTCGATC
CTGCTACCGCAACCCTCAGTCTGGTCTGA
Found at i:1431127 original size:26 final size:26
Alignment explanation
Indices: 1431086--1431138 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1431076 CTGGTCCGAT
* *
1431086 CTTAGACTTGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
1431112 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
1431138 C
1 C
1431139 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:1431472 original size:170 final size:167
Alignment explanation
Indices: 1431111--1431867 Score: 564
Period size: 170 Copynumber: 4.6 Consensus size: 167
1431101 AACTTTGTAT
* * * * *
1431111 GCTTAGACTGGGGATGAACT-TCGTATGCCTAAGTCAACCCATGAAACGAGCGTTCGGGCGCTCA
1 GCTTAGAATGGGAATGAACTCT-GTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* ** * ** * * *
1431175 GCTGACCGAAGAGGCATAATGCATAAGTCGGGGATTAGCGCGGTCCCCCTCTACGTGCTGTCGAT
65 GCTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCC-CTACGTGCTGTCAAT
* * *
1431240 CC-CGCTG-CCGGT-CTTGCTACCACAACCCTCGGTCC-GACTGGA
129 CCACGCTGTCC--TAC-TGCT---GCAACCCTCGGTCCGGTC-CGA
*
1431282 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCACTCA
1 GCTTAGA-ATGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * * * *
1431346 GCAGGCCGAAGAGGCAGAATGCGCAAGCCAGAGATCGGCTCGATCCCCCCTACGTGCTGCCAATC
65 GCTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCAATC
*
1431411 CTACTGCTGGTCCTACTGTTGCAACCCTCGGTCCGGTCCGA
130 C-AC-GCT-GTCCTACTGCTGCAACCCTCGGTCCGGTCCGA
* * * * *
1431452 TCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGCGTGCGGGTGCTCAG
1 GCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * * * *
1431517 CCGATC-AGAGAGGCAGAATGCGCAAGCTGGGCA-CGGCACGGTCCCCCCTGCGTGC--T--AT-
66 CTGACCGA-AGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCAATC
* *
1431575 CA----ATCCTACTGCTGCAACCCTCGGTCCGGTCCAA
130 CACGCTGTCCTACTGCTGCAACCCTCGGTCCGGTCCGA
* * ** ** * ** * * *
1431609 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACAAAACGAGCGTATGAGCACTGAG
1 GCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
* * * * *
1431674 CTGACCGGAGAGGCATAATGCACAAGCCGGGGATCGGCTCGATCCCCTTCTACGTGCTGTCAGT-
66 CTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCC-CCTACGTGCTGTCAATC
* ** *
1431738 C-C-C-G--CTAC--C-ACAACCCTCGGTCCGGTTGGG
130 CACGCTGTCCTACTGCTGCAACCCTCGGTCCGGTCCGA
** *
1431768 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCA
1 GCTTAGA-ATGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCA
* * *
1431832 G-TCGGCC-AGAGAGGCAGAATGTGCAAGTCGGGGATC
65 GCT-GACCGA-AGAGGCAGAATGCGCAAGCCGGGGATC
1431868 ACCCCAATCC
Statistics
Matches: 468, Mismatches: 95, Indels: 58
0.75 0.15 0.09
Matches are distributed among these distances:
157 107 0.23
158 12 0.03
159 97 0.21
160 2 0.00
161 1 0.00
162 4 0.01
163 3 0.01
164 1 0.00
165 2 0.00
169 21 0.04
170 111 0.24
171 93 0.20
172 3 0.01
173 7 0.01
174 2 0.00
175 2 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (167 bp):
GCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGCTCAG
CTGACCGAAGAGGCAGAATGCGCAAGCCGGGGATCGGCTCGATCCCCCCTACGTGCTGTCAATCC
ACGCTGTCCTACTGCTGCAACCCTCGGTCCGGTCCGA
Found at i:1431864 original size:159 final size:156
Alignment explanation
Indices: 1431432--1431953 Score: 427
Period size: 159 Copynumber: 3.3 Consensus size: 156
1431422 CCTACTGTTG
* * *
1431432 CAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAA
1 CAACCCTCGGTCCGGTCCAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAA
* * * *
1431497 ATGAGCGTGCGGGTGCTCAGCCGATCAGAGAGGCAGAATGCGCAAGCTGGGCA-CGGCACGGTCC
66 ATGAGCGTGCGGGCGCTCAG-CGACCAGAGAGGCAGAATGCGCAAGC-GGGGATCGGCACGATCC
* * * **
1431561 CCCCTGCGTGCTATCAATCCTACTGCTG
129 CCCCTACGTGCTATCAATCCCACTACCA
* * * **
1431589 CAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACAAA
1 CAACCCTCGGTCCGGTCCAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAA
* ** * * * * * * *
1431654 ACGAGCGTATGAGCACTGAGCTGACCGGAGAGGCATAATGCACAAGCCGGGGATCGGCTCGATCC
66 ATGAGCGTGCGGGCGCTCAGC-GACCAGAGAGGCAGAATGCGCAAG-CGGGGATCGGCACGATCC
* * * *
1431719 CCTTCTACGTGCTGTCAGTCCCGCTACCA
129 CC-CCTACGTGCTATCAATCCCACTACCA
**** * *
1431748 CAACCCTCGGTCCGGTTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 CAACCCTCGGTCCGGTCCAAGCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCTAACCCATGA
* * * ** * *
1431812 AATGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGTGCAAGTCGGGGATCACCCCAATC
65 AATGAGCGTGCGGGCGCTCAG-CGACCAGAGAGGCAGAATGCGCAAG-CGGGGATCGGCACGATC
* * * * ** * **
1431877 CCCCTTGCGTGCTACCGATCCTGCTGCTG
128 CCCCCTACGTGCTATCAATCCCACTACCA
* * ** * *
1431906 TAACCCTCGGTCCAGTCTGACCTTAGACTGGGAATGAACTCTGTATGC
1 CAACCCTCGGTCCGGTCCAAGCTTAGACTGGGAATGAACTCCGTATGC
1431954 TTAGACATGG
Statistics
Matches: 282, Mismatches: 76, Indels: 13
0.76 0.20 0.04
Matches are distributed among these distances:
156 1 0.00
157 97 0.34
158 65 0.23
159 117 0.41
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (156 bp):
CAACCCTCGGTCCGGTCCAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCCATGAA
ATGAGCGTGCGGGCGCTCAGCGACCAGAGAGGCAGAATGCGCAAGCGGGGATCGGCACGATCCCC
CCTACGTGCTATCAATCCCACTACCA
Found at i:1431956 original size:26 final size:26
Alignment explanation
Indices: 1431927--1431982 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
1431917 CCAGTCTGAC
1431927 CTTAGAC-TGGGAATGAAC-TCTGTATG
1 CTTAGACAT-GGAATGAACTTC-GTATG
1431953 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTTCGTATG
1431979 CTTA
1 CTTA
1431983 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTTCGTATG
Found at i:1432097 original size:184 final size:184
Alignment explanation
Indices: 1431768--1432137 Score: 458
Period size: 184 Copynumber: 2.0 Consensus size: 184
1431758 TCCGGTTGGG
** *
1431768 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* * * * *
1431833 TCGGCCAGAGAGGCAGAATGTGCAAGTCGGGGATCACCCCAATCCCCCTTGCGTGCTACCGATCC
66 TCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCACCCCAATCCCCCCTGCGTGCTACCGATCC
*** *
1431898 TGCTGCTGTAACCCTCGGTCCAGTCTGACCTTAGACTGGGAATGAAC-TCTGTAT
131 TGCTGCCACAACCCTCGGTCCAGTCCGACCTTAGACTGGGAATGAACTTC-GTAT
* * * * *
1431952 GCTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCACAAAATGAGCGTTCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
* * * ***
1432017 -CTGACTAGAGAGGCAGAATGCGCAAGCCAGGGATCGA-CTCGATCCCCCCTGCGTGCTGTTGAT
66 TC-GACCAGAGAGGCAGAATGCGCAAGCCAGGGATC-ACCCCAATCCCCCCTGCGTGCTACCGAT
* * *
1432080 CTTGCTGCCACAACCCTCTGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTAT
129 CCTGCTGCCACAACCCTCGGTCCAGTCCGACCTTAGACTGGGAATGAACTTCGTAT
1432136 GC
1 GC
1432138 CTAAGTCAAC
Statistics
Matches: 157, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
183 1 0.01
184 153 0.97
185 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (184 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAG
TCGACCAGAGAGGCAGAATGCGCAAGCCAGGGATCACCCCAATCCCCCCTGCGTGCTACCGATCC
TGCTGCCACAACCCTCGGTCCAGTCCGACCTTAGACTGGGAATGAACTTCGTAT
Found at i:1432243 original size:342 final size:343
Alignment explanation
Indices: 1431610--1432245 Score: 746
Period size: 342 Copynumber: 1.9 Consensus size: 343
1431600 CCGGTCCAAT
** *
1431610 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACAAAACGAGCGTATGAGCACTGAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTATGAGCACTCAGC
* * * * *
1431675 TGACCGGAGAGGCATAATGCACAAGCCGGGGATCGGCTCGATCCCCTTCTACGTGCTGTCAGTCC
66 TGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACTCGATCCCCTCCTACGTGCTGTCAGTCC
* ** *
1431740 CGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
131 CGCTACCACAACCCTCGGTCCAGTCCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * ** * *
1431805 CCCATGAAATGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAATGTGCAAGTCGGGGATCAC
196 CCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGAGGCAGAACGTGCAAGCCGGGGATCAC
1431870 CCCAATCCCCCTTGCGTGCTACCGATCCTGCTGCTGTAACCCTCGGTCCAGTCTGACCTTAGACT
261 CCCAATCCCCCTTGCGTGCTACCGATCCTGCTGCTGTAACCCTCGGTCCAGTCTGACCTTAGACT
1431935 GGGAATGAACTCTGTATG
326 GGGAATGAACTCTGTATG
* * * **
1431953 CTTAGACAT-GGAATGAACT-TCGTATGCTTAAGCCAACCCACAAAATGAGCGT-TCGGGTGCTC
1 CTTAGAC-TGGGAATGAACTCT-GTATGCCTAAGCCAACCCACAAAACGAGCGTAT-GAGCACTC
* * * *
1432015 AGCTGACTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGATCCCC-CCTGCGTGCTGT-TG
63 AGCTGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACTCGATCCCCTCCTACGTGCTGTCAG
** * * * * *
1432078 ATCTTGCTGCCACAACCCTCTGTCCAGTCCGATCTTAGAC-TGGGAATGAACTTCGTATGCCTAA
128 -TCCCGCTACCACAACCCTCGGTCCAGTCCGAGCTTAGACAT-GGAATGAACTCCCTATGCCTAA
* * ** * *
1432142 GTCAACCCACGAAATGAGCGTGCGGGCGCTGAACCGG-TGGAGAGGCATAACGTGTAAGCCGGGG
191 GCCAACCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGAGGCAGAACGTGCAAGCCGGGG
** ** * * *
1432206 ATCGGCCCGGTCCCCCTCTTCGTGCTGCCGGTCCTGCTGC
256 ATCACCCCAATCCCCCT-TGCGTGCTACCGATCCTGCTGC
1432246 CACAACCCTC
Statistics
Matches: 240, Mismatches: 47, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
341 36 0.15
342 112 0.47
343 91 0.38
344 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTATGAGCACTCAGC
TGACCAGAGAGGCAGAATGCACAAGCCAGGGATCGACTCGATCCCCTCCTACGTGCTGTCAGTCC
CGCTACCACAACCCTCGGTCCAGTCCGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACGAAATGAGCGTGCGGGCGCTCAACCGGCCAGAGAGGCAGAACGTGCAAGCCGGGGATCAC
CCCAATCCCCCTTGCGTGCTACCGATCCTGCTGCTGTAACCCTCGGTCCAGTCTGACCTTAGACT
GGGAATGAACTCTGTATG
Found at i:1432244 original size:158 final size:157
Alignment explanation
Indices: 1431953--1432445 Score: 494
Period size: 158 Copynumber: 3.1 Consensus size: 157
1431943 ACTCTGTATG
* * * *
1431953 CTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCACAAAATGAGCGTTCGGGTGCTCAGC
1 CTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
* * * * * * * ** *
1432018 TGACTAGAGAGGCAGAATGCGCAAGCCAGGGATCGACTCGATCCCCCCTGCGTGCTGTTGATCTT
66 CG-CTGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTTCGTGCTGCCGATCCT
*
1432083 GCTGCCACAACCCTCTGTCCAGTCCGAT
130 GCTGCCACAACCCTCAGTCCAGTCCGAT
* * *
1432111 CTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTGAA
1 CTTAGACAT-GGAATGAACTTCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAG
* * * * * *
1432175 CCGGTGGAGAGGCATAACGTGTAAGCCGGGGATCGGCCCGGTCCCCCTCTTCGTGCTGCCGGTCC
65 CCGCTGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCC-CTTCGTGCTGCCGATCC
*
1432240 TGCTGCCACAACCCTCAGTCCAG--CTAT
129 TGCTGCCACAACCCTCAGTCCAGTCCGAT
* * * ** *
1432267 GGCTTACACATGGAATGAACTCCCTATGCTTAAGCCAACCCACGAAACAAGCTTGCGGGCGC-GC
1 --CTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTG-
* * * * * *
1432331 AGCCAACTGGAGAGGTAGAATGTGCAAGCTAGGGATCGGTCCAGTCCCCCCTGT-GTGCTACCGA
63 AGCC-GCTGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCT-TCGTGCTGCCGA
** * *
1432395 TCCCACTGCCACAACCTTCGGTCCAGTCCGAT
126 TCCTGCTGCCACAACCCTCAGTCCAGTCCGAT
1432427 CTTAGAC-TGGGAATGAACT
1 CTTAGACAT-GGAATGAACT
1432446 CCNNNNNNNN
Statistics
Matches: 272, Mismatches: 52, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
156 3 0.01
157 37 0.14
158 192 0.71
159 37 0.14
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.20
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTTCGTATGCTTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTGAGC
CGCTGGAGAGGCAGAATGTGCAAGCCAGGGATCGGCCCGGTCCCCCCTTCGTGCTGCCGATCCTG
CTGCCACAACCCTCAGTCCAGTCCGAT
Found at i:1432251 original size:500 final size:500
Alignment explanation
Indices: 1431462--1432446 Score: 1188
Period size: 500 Copynumber: 2.0 Consensus size: 500
1431452 TCTTAGATTG
* **
1431462 GGAATGAACTCCGTATGCCTAAGCTAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGATCAGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCGATCAGAG
* * * **
1431527 AGGCAGAATGCGCAAGCTGGGCACGGCACGGTCCCCCCTGCGTGCTATCAATCCTACTGCTGCAA
66 AGGCAGAATGCGCAAGCAGGGCACGACACGATCCCCCCTGCGTGCTATCAATCCTACTGCCACAA
* *
1431592 CCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACAAAACG
131 CCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACG
* * * * * *
1431657 AGCGTATGAGCACTGAGCTGACCGGAGAGGCATAATGCACAAGCCGGGGATCGGCTCGATCCCCT
196 AGCGTACGAGCACTGAACCGACCGGAGAGGCATAACGCACAAGCCGGGGATCGGCCCGATCCCCC
* * * * * *
1431722 TCTACGTGCTGTCAGTCCCGCTACCACAACCCTCGGTCCGGTTGGGGCTTAGACATGGAATGAAC
261 TCTACGTGCTGCCAGTCCCGCTACCACAACCCTCAGTCCAGCTAGGGCTTACACATGGAATGAAC
* *** * * **
1431787 TCCCTATGCCTAAGCCAACCCATGAAATGGGCGTGCGGGCGCTCAGTCGGCCAGAGAGGCAGAAT
326 TCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCGCAGCCAACCAGAGAGGCAGAAT
* * ** ***
1431852 GTGCAAG-TCGGGGATCACCCCAATCCCCCTTGCGTGCTACCGATCCTGCTGCTGTAACCCTCGG
391 GTGCAAGCT-AGGGATCACCCCAATCCCCCCTGCGTGCTACCGATCCCACTGCCACAACCCTCGG
*
1431916 TCCAGTCTGACCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT
455 TCCAGTCCGACCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT
* * * *
1431962 GGAATGAACTTCGTATGCTTAAGCCAACCCACAAAATGAGCGTTCGGGTGCTCAGCTGA-CTAGA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCGATC-AGA
* * ** * *
1432026 GAGGCAGAATGCGCAAGCCAGGG-ATCGACTCGATCCCCCCTGCGTGCTGTTGATCTTGCTGCCA
65 GAGGCAGAATGCGCAAG-CAGGGCA-CGACACGATCCCCCCTGCGTGCTATCAATCCTACTGCCA
* * *
1432090 CAACCCTCTGTCCAGTCCGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCACGA
128 CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACAA
* * * * ** *** *
1432154 AATGAGCGTGCGGGCGCTGAACCG-GTGGAGAGGCATAACGTGTAAGCCGGGGATCGGCCCGGTC
192 AACGAGCGTACGAGCACTGAACCGACCGGAGAGGCATAACGCACAAGCCGGGGATCGGCCCGATC
* * * * *
1432218 CCCCTCTTCGTGCTGCCGGTCCTGCTGCCACAACCCTCAGTCCAGCTATGGCTTACACATGGAAT
257 CCCCTCTACGTGCTGCCAGTCCCGCTACCACAACCCTCAGTCCAGCTAGGGCTTACACATGGAAT
* * ** *
1432283 GAACTCCCTATGCTTAAGCCAACCCACGAAACAAGCTTGCGGGCGCGCAGCCAACTGGAGAGGTA
322 GAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCGCAGCCAACCAGAGAGGCA
*** * * *
1432348 GAATGTGCAAGCTAGGGATCGGTCCAGTCCCCCCTGTGTGCTACCGATCCCACTGCCACAACCTT
387 GAATGTGCAAGCTAGGGATCACCCCAATCCCCCCTGCGTGCTACCGATCCCACTGCCACAACCCT
*
1432413 CGGTCCAGTCCGATCTTAGACTGGGAATGAACTC
452 CGGTCCAGTCCGACCTTAGACTGGGAATGAACTC
1432447 CNNNNNNNNN
Statistics
Matches: 402, Mismatches: 78, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
499 1 0.00
500 293 0.73
501 108 0.27
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (500 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCGATCAGAG
AGGCAGAATGCGCAAGCAGGGCACGACACGATCCCCCCTGCGTGCTATCAATCCTACTGCCACAA
CCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACG
AGCGTACGAGCACTGAACCGACCGGAGAGGCATAACGCACAAGCCGGGGATCGGCCCGATCCCCC
TCTACGTGCTGCCAGTCCCGCTACCACAACCCTCAGTCCAGCTAGGGCTTACACATGGAATGAAC
TCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCGCGCAGCCAACCAGAGAGGCAGAAT
GTGCAAGCTAGGGATCACCCCAATCCCCCCTGCGTGCTACCGATCCCACTGCCACAACCCTCGGT
CCAGTCCGACCTTAGACTGGGAATGAACTCTGTATGCTTAGACAT
Found at i:1435580 original size:19 final size:18
Alignment explanation
Indices: 1435556--1435647 Score: 70
Period size: 18 Copynumber: 5.2 Consensus size: 18
1435546 ATACTATGCT
1435556 TGAAAAAATAAAAAAAAGG
1 TGAAAAAATAAAAAAAA-G
*
1435575 TG-AAAAATGAAAAAAA-
1 TGAAAAAATAAAAAAAAG
*
1435591 TGAAAAAA-AATGAAAAAAA
1 TGAAAAAATAA--AAAAAAG
*
1435610 TGAAAAAAT--GAAAAA-
1 TGAAAAAATAAAAAAAAG
*
1435625 TGAAAAAAGAAAAAAGAAG
1 TGAAAAAATAAAAAA-AAG
1435644 TGAA
1 TGAA
1435648 GAAAGGAGGA
Statistics
Matches: 59, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
15 8 0.14
16 8 0.14
17 8 0.14
18 21 0.36
19 14 0.24
ACGTcount: A:0.74, C:0.00, G:0.15, T:0.11
Consensus pattern (18 bp):
TGAAAAAATAAAAAAAAG
Found at i:1435588 original size:8 final size:8
Alignment explanation
Indices: 1435577--1435639 Score: 76
Period size: 9 Copynumber: 7.6 Consensus size: 8
1435567 AAAAAAGGTG
1435577 AAAAATGAA
1 AAAAATG-A
1435586 AAAAATGAAA
1 AAAAATG--A
1435596 AAAAATGAA
1 AAAAATG-A
1435605 AAAAATGA
1 AAAAATGA
1435613 AAAAATG-
1 AAAAATGA
1435620 AAAAATGA
1 AAAAATGA
1435628 AAAAA-GA
1 AAAAATGA
1435635 AAAAA
1 AAAAA
1435640 GAAGTGAAGA
Statistics
Matches: 52, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
7 14 0.27
8 13 0.25
9 16 0.31
10 9 0.17
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.10
Consensus pattern (8 bp):
AAAAATGA
Found at i:1435596 original size:27 final size:26
Alignment explanation
Indices: 1435556--1435639 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 26
1435546 ATACTATGCT
1435556 TGAAAAAAT-AAAAAAAAGGTG-AAAAA
1 TGAAAAAATGAAAAAAAA--TGAAAAAA
1435582 TGAAAAAAATGAAAAAAAATGAAAAAAA
1 TG-AAAAAATGAAAAAAAATG-AAAAAA
1435610 TGAAAAAATG---AAAAATGAAAAAA
1 TGAAAAAATGAAAAAAAATGAAAAAA
1435633 -GAAAAAA
1 TGAAAAAA
1435640 GAAGTGAAGA
Statistics
Matches: 54, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
22 7 0.13
23 6 0.11
24 7 0.13
26 4 0.07
27 15 0.28
28 15 0.28
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (26 bp):
TGAAAAAATGAAAAAAAATGAAAAAA
Found at i:1435624 original size:9 final size:9
Alignment explanation
Indices: 1435558--1435632 Score: 84
Period size: 9 Copynumber: 8.6 Consensus size: 9
1435548 ACTATGCTTG
*
1435558 AAAAAATAA
1 AAAAAATGA
* *
1435567 AAAAAAGGT
1 AAAAAATGA
*
1435576 GAAAAATGA
1 AAAAAATGA
1435585 AAAAAATGAA
1 AAAAAATG-A
1435595 AAAAAATGA
1 AAAAAATGA
1435604 AAAAAATG-
1 AAAAAATGA
1435612 AAAAAATG-
1 AAAAAATGA
1435620 -AAAAATGA
1 AAAAAATGA
1435628 AAAAA
1 AAAAA
1435633 GAAAAAAGAA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
7 7 0.12
8 8 0.14
9 32 0.57
10 9 0.16
ACGTcount: A:0.77, C:0.00, G:0.12, T:0.11
Consensus pattern (9 bp):
AAAAAATGA
Found at i:1435640 original size:7 final size:7
Alignment explanation
Indices: 1435604--1435642 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
1435594 AAAAAAATGA
1435604 AAAAAATG
1 AAAAAA-G
1435612 AAAAAATG
1 AAAAAA-G
*
1435620 AAAAATG
1 AAAAAAG
1435627 AAAAAAG
1 AAAAAAG
1435634 AAAAAAG
1 AAAAAAG
1435641 AA
1 AA
1435643 GTGAAGAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
7 16 0.55
8 13 0.45
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (7 bp):
AAAAAAG
Found at i:1436772 original size:41 final size:41
Alignment explanation
Indices: 1436654--1436877 Score: 373
Period size: 42 Copynumber: 5.5 Consensus size: 41
1436644 ATGTTTGTCA
1436654 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
*
1436696 AGGAGCAATTTATTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
1436738 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
1436779 AGGAGCAATTTA-TTT-TAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
1436818 AGGAGCAATTTA-TTTTCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1436858 AGGAGCAATTTACTTTCCAA
1 AGGAGCAATTTACTTTCCAA
1436878 TATTTAGAGG
Statistics
Matches: 174, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 38 0.22
40 37 0.21
41 41 0.24
42 58 0.33
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:1436881 original size:27 final size:27
Alignment explanation
Indices: 1436851--1436904 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
1436841 GTGGTGCCTC
1436851 TATTTAGAGGAGCAATTTACTTTCCAA
1 TATTTAGAGGAGCAATTTACTTTCCAA
1436878 TATTTAGAGGAGCAATTTACTTTCCAA
1 TATTTAGAGGAGCAATTTACTTTCCAA
1436905 AGTCGTGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (27 bp):
TATTTAGAGGAGCAATTTACTTTCCAA
Found at i:1436918 original size:68 final size:68
Alignment explanation
Indices: 1436813--1436946 Score: 234
Period size: 68 Copynumber: 2.0 Consensus size: 68
1436803 GGTGCCTCTG
*
1436813 TTTAGAGGAGCAATTTATTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTAC-TTTCCA
1 TTTAGAGGAGCAATTTATTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCA
1436877 ATA
66 ATA
*
1436880 TTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCC
1 TTTAGAGGAGCAATTTA-TTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCC
1436945 AA
65 AA
1436947 GTCGTGGTGC
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
67 17 0.27
68 39 0.62
69 7 0.11
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (68 bp):
TTTAGAGGAGCAATTTATTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCCA
ATA
Found at i:1437006 original size:43 final size:41
Alignment explanation
Indices: 1436880--1437015 Score: 211
Period size: 41 Copynumber: 3.3 Consensus size: 41
1436870 CTTTCCAATA
*
1436880 TTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTG
1 TTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTG
1436921 TTTAGAGGAGCAATTTACTTTTCC-AAGTCGTGGTGCCTCTG
1 TTTAGAGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTG
* *
1436962 TTTAGAGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTG
1 TTTAGAGGAGCAATTTAT-TTTC-CAAAGTCGTGGTGCCTCTG
1437005 TTTAGAGGAGC
1 TTTAGAGGAGC
1437016 TTTGGTCAAA
Statistics
Matches: 88, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
40 1 0.01
41 55 0.62
42 6 0.07
43 26 0.30
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (41 bp):
TTTAGAGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTG
Found at i:1437039 original size:7 final size:7
Alignment explanation
Indices: 1437023--1437061 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
1437013 AGCTTTGGTC
1437023 AAAAAC-
1 AAAAACA
1437029 AAAAACA
1 AAAAACA
1437036 AAAAA-A
1 AAAAACA
1437042 AAAACACA
1 AAAA-ACA
1437050 AAAAACA
1 AAAAACA
1437057 AAAAA
1 AAAAA
1437062 ATGAAAATGT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 11 0.37
7 14 0.47
8 5 0.17
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAACA
Found at i:1437046 original size:18 final size:19
Alignment explanation
Indices: 1437023--1437062 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
1437013 AGCTTTGGTC
1437023 AAAAACA-AAAACAA-AAAA
1 AAAAACACAAAA-AACAAAA
1437041 AAAAACACAAAAAACAAAA
1 AAAAACACAAAAAACAAAA
1437060 AAA
1 AAA
1437063 TGAAAATGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (19 bp):
AAAAACACAAAAAACAAAA
Found at i:1437050 original size:14 final size:13
Alignment explanation
Indices: 1437023--1437061 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
1437013 AGCTTTGGTC
*
1437023 AAAAACAAAAACA
1 AAAAAAAAAAACA
1437036 AAAAAAAAAACACA
1 AAAAAAAAAA-ACA
1437050 AAAAACAAAAAA
1 AAAAA-AAAAAA
1437062 ATGAAAATGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
13 9 0.39
14 9 0.39
15 5 0.22
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAAACA
Found at i:1437052 original size:20 final size:20
Alignment explanation
Indices: 1437023--1437062 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
1437013 AGCTTTGGTC
1437023 AAAAAC-AAAAACAAAAAAA
1 AAAAACAAAAAACAAAAAAA
1437042 AAAACACAAAAAACAAAAAAA
1 AAAA-ACAAAAAACAAAAAAA
1437063 TGAAAATGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.21
20 2 0.11
21 13 0.68
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAACAAAAAACAAAAAAA
Found at i:1437259 original size:15 final size:15
Alignment explanation
Indices: 1437218--1437261 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
1437208 AATTCGGTTC
1437218 TTATTTTGTATTATTT
1 TTATTTTGTATT-TTT
1437234 TTATTTT-TATTTTT
1 TTATTTTGTATTTTT
*
1437248 TTCTTTTGTATTTT
1 TTATTTTGTATTTT
1437262 AGGCATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.35
15 10 0.38
16 7 0.27
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.80
Consensus pattern (15 bp):
TTATTTTGTATTTTT
Found at i:1437281 original size:4 final size:4
Alignment explanation
Indices: 1437268--1437410 Score: 64
Period size: 4 Copynumber: 35.0 Consensus size: 4
1437258 TTTTAGGCAT
* * * * * *
1437268 TTTA -TTA TTTA TTTA -TTA TTACTA TGTA TTAA TATA TGTA TATC TTTA
1 TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA
* *
1437316 TTTA TTTA TTTA TTT- TGTTA -ATA TTTA TATGTA TTTTA TTTA TATA
1 TTTA TTTA TTTA TTTA T-TTA TTTA TTTA T-T-TA -TTTA TTTA TTTA
* * *
1437362 GTTA TATA TTTA -TTA TTATA TTATAA TTTA TTTA TTTA -TTA TTTT TTTA
1 TTTA TTTA TTTA TTTA TT-TA TT-T-A TTTA TTTA TTTA TTTA TTTA TTTA
1437411 CCTTGTAATA
Statistics
Matches: 105, Mismatches: 20, Indels: 28
0.69 0.13 0.18
Matches are distributed among these distances:
3 15 0.14
4 70 0.67
5 10 0.10
6 9 0.09
7 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:1437354 original size:38 final size:35
Alignment explanation
Indices: 1437273--1437408 Score: 98
Period size: 38 Copynumber: 3.7 Consensus size: 35
1437263 GGCATTTTAT
* *
1437273 TATTTATTTA-TTATTACTATGTATTAATA-TATGTATA
1 TATTTATTTATTTATTA-T-T-TTTTAATATTATAT-TA
*
1437310 TCTTTATTTATTTATTTATTTTGTTAATATTTATATGTA
1 TATTTATTTATTTA-TTATTTT-TTAATA-TTATAT-TA
* * *
1437349 T-TTTATTTATATAGTTATATATTTATTATTATATTA
1 TATTTATTTATTTA-TTAT-TTTTTAATATTATATTA
1437385 TAATTTATTTATTTATTATTTTTT
1 T-ATTTATTTATTTATTATTTTTT
1437409 TACCTTGTAA
Statistics
Matches: 81, Mismatches: 10, Indels: 17
0.75 0.09 0.16
Matches are distributed among these distances:
36 8 0.10
37 26 0.32
38 35 0.43
39 12 0.15
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (35 bp):
TATTTATTTATTTATTATTTTTTAATATTATATTA
Found at i:1437360 original size:21 final size:19
Alignment explanation
Indices: 1437318--1437360 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
1437308 TATCTTTATT
*
1437318 TATTTATTTATTTTGTTAA
1 TATTTATTTATTTTATTAA
*
1437337 TATTTATATGTATTTTATTTA
1 TATTTAT-T-TATTTTATTAA
1437358 TAT
1 TAT
1437361 AGTTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 1 0.05
21 12 0.60
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (19 bp):
TATTTATTTATTTTATTAA
Found at i:1437380 original size:26 final size:26
Alignment explanation
Indices: 1437341--1437404 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
1437331 TGTTAATATT
*
1437341 TATATGTATT-TTAT-TTATATAGTTA
1 TATATTTATTATTATATTATA-AGTTA
*
1437366 TATATTTATTATTATATTATAATTTA
1 TATATTTATTATTATATTATAAGTTA
*
1437392 TTTATTTATTATT
1 TATATTTATTATT
1437405 TTTTTACCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.26
26 20 0.59
27 5 0.15
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (26 bp):
TATATTTATTATTATATTATAAGTTA
Found at i:1438413 original size:5 final size:5
Alignment explanation
Indices: 1438403--1438485 Score: 62
Period size: 5 Copynumber: 15.6 Consensus size: 5
1438393 CCTTTTTACC
* *
1438403 TTTAT TTTATT TTTTT TTTGT TTTAT TTT-T CTTTA- TTTAT TTTATT
1 TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT -TTTAT TTTAT TTTA-T
*
1438449 TTTAT TTTCACT TTTAT TTGTTT TATTAT TTTAT TTT
1 TTTAT TTT-A-T TTTAT TT-TAT T-TTAT TTTAT TTT
1438486 CTTTAAATAA
Statistics
Matches: 64, Mismatches: 5, Indels: 18
0.74 0.06 0.21
Matches are distributed among these distances:
4 5 0.08
5 37 0.58
6 17 0.27
7 5 0.08
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:1438445 original size:35 final size:36
Alignment explanation
Indices: 1438403--1438485 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 36
1438393 CCTTTTTACC
** *
1438403 TTTATTTTATTTTT-TTTT-TGTTTTATTTTTCTTTA
1 TTTATTTTATTTTTATTTTCACTTTTATTTGT-TTTA
1438438 TTTATTTTATTTTTATTTTCACTTTTATTTGTTTTA
1 TTTATTTTATTTTTATTTTCACTTTTATTTGTTTTA
1438474 -TTATTTTATTTT
1 TTTATTTTATTTT
1438486 CTTTAAATAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
35 26 0.60
36 8 0.19
37 9 0.21
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (36 bp):
TTTATTTTATTTTTATTTTCACTTTTATTTGTTTTA
Found at i:1438641 original size:119 final size:120
Alignment explanation
Indices: 1438490--1439018 Score: 663
Period size: 119 Copynumber: 4.5 Consensus size: 120
1438480 TATTTTCTTT
* *
1438490 AAATAAAA-ATCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-A
1 AAATAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCA
* *
1438553 AA-TTTCCAAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
66 AAGTTTCC-AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* * * *
1438608 AAATAAAATTTCAAAAAAAGTGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCA
1 AAATAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCA
* * *
1438673 AAGTTT-CTAAAAAAATATTTTTG-GAGAAAAGTTGAAAGTATTAATATTCCTTAA
66 AAGTTTCCAAAAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTTAA
** * *
1438727 AAATAAAATTTCAAAAAAAAGGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCA
1 AAATAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCA
* *
1438792 AAGTTTCC---AAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
66 AAGTTTCCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* *
1438844 AAATCAAAATTTCCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTGCCTTAAAAA
1 AAAT-AAAATTT-C-AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
* * *
1438909 T-AAA-TTTTCAAAAAATCA-ATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT-A
63 TCAAAGTTTCCAAAAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAA
* * *
1438965 AATTAAAGTTTC-AAAAGAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATAAAATTTCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
1439019 CTACGCAAGA
Statistics
Matches: 363, Mismatches: 33, Indels: 31
0.85 0.08 0.07
Matches are distributed among these distances:
117 80 0.22
118 21 0.06
119 161 0.44
120 56 0.15
121 43 0.12
122 2 0.01
ACGTcount: A:0.46, C:0.09, G:0.13, T:0.33
Consensus pattern (120 bp):
AAATAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCA
AAGTTTCCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:1438653 original size:59 final size:58
Alignment explanation
Indices: 1438502--1439018 Score: 625
Period size: 59 Copynumber: 8.7 Consensus size: 58
1438492 ATAAAAATCA
*
1438502 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-C
* *
1438560 AAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 --AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
1438620 AAAAAAAGTGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTC
1 AAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
* *
1438680 TAAAAAAATATTTTTG-GAGAAAAGTTGAAAGTATTAATATTCCTTAAAAATAAAATTTC
1 -AAAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * *
1438739 AAAAAAA-AGGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
1 AAAAAAATA--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
* * *
1438799 -CAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-C
* * *
1438858 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTGCCTTAAAAATAAATTTTC
1 --AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * *
1438918 -AAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT-AAATTAAAGTTTC
1 AAAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAAATAAAATTTC
*
1438977 AAAAGAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
1439019 CTACGCAAGA
Statistics
Matches: 404, Mismatches: 34, Indels: 40
0.85 0.07 0.08
Matches are distributed among these distances:
57 9 0.02
58 91 0.23
59 130 0.32
60 111 0.27
61 19 0.05
62 44 0.11
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:1438866 original size:179 final size:172
Alignment explanation
Indices: 1438499--1439018 Score: 718
Period size: 179 Copynumber: 2.9 Consensus size: 172
1438489 TAAATAAAAA
1438499 TCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTCCAAA
1 TCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAA-TTTCCTTAAAAATAAAATTT-C--A
* *
1438563 AAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAG
62 AAAAAA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAAGTTTC-AAAAAA-
* * * *
1438628 TGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTT
123 TATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATT
* * *
1438678 TCTAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATTAATATTCCTTAAAAATAAAATTTCAAAA
1 TCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAAT-TTCCTTAAAAATAAAATTTCAAAA
* *
1438743 AAAAGGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAATAT
65 AAAA--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT-AAAGTTTCAAAAAATAT
1438808 TTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATT
126 TTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATT
*
1438855 TCCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTGCCTTAAAAATAAATTTTCAA
1 T-C-AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTT-CCTTAAAAATAAAATTTCAA
* *
1438920 AAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCTAAATTAAAGTTTCAAAAGAAT
63 AAAA--AATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAATAAAGTTTCAAAA-AAT
*
1438985 ATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
124 ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCC
1439019 CTACGCAAGA
Statistics
Matches: 308, Mismatches: 21, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
176 1 0.00
177 54 0.18
178 58 0.19
179 186 0.60
180 7 0.02
181 2 0.01
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (172 bp):
TCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTCCTTAAAAATAAAATTTCAAAAA
AAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAGTTTCAAAAAATATTTTTA
AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATT
Found at i:1441723 original size:865 final size:866
Alignment explanation
Indices: 1439744--1442073 Score: 3437
Period size: 865 Copynumber: 2.7 Consensus size: 866
1439734 TGTTCACCTG
* *
1439744 CAACCCTCAGTTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAA
1 CAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
* * * * * * **
1439809 ATGAGCGTGCGGGC-----GCTC-A-GTCGGCCAGAGGGGCAGGATGTGCAAGCCGTCAATCGAT
66 ACGAGCGGGCGGGCAGTGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* * *
1439867 AGGGTGGTAAGTGTGTTTTGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTT
131 AGGGTGGT-AGTGGGTTTAGGCACATCTTCATA-TTTTGCTATGCCAATGCCATTTTTATGGCTT
*
1439932 GCAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
194 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * *
1439997 ATTTTTCACGATTTTTGAAACTTTTTAC-AGTTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGT
259 ATTTTTCATGATTTTTGAAACTTTTTACGA-TTCGAGA-TTTTTTAAAATTTTTTCAGAAGGAGT
* * *
1440061 TTTGGCTCCAAACTTGGTAAACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAAC
322 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCAC-AAAAAATTCAGC
*
1440126 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTT
386 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
1440191 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
451 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
1440256 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
516 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
** * * * *
1440321 ACACCCCCCAGCCCCTCAATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTTGAAGATGCTCCG
581 ACACCCCCCAGCCCCTCAATCGCCGAAACCCCAATGCCGGCGGTCAGGTTCTCGAAGATGCTCCA
* *
1440386 ACGATGGTGCCCCGGGCGAAAAAAAAAGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCT
646 ACGATGGTGCCCCGGGCGAAAAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
1440451 GCAACACTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
711 GCAACACTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
1440516 AACGAGCGTACGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGAGTC
776 AACGAGCGTACAGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCAGAGT-
*
1440581 CCCCTCTGCATGCTACCGATCCTGCCGCTG
840 CCCCTCT--AT-CTACCGATCCTGCCGCTA
* * * * * *
1440611 CAACCCT-TGGTCTGGACTGATCTTAGACTGTGAATGAACTTCGTATGCCTCAGCCAACCAACGA
1 CAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGA
* * * *
1440675 AACGAGCGGGCGGAC-GTGCGGTAACTACGTCGGCCAGAGAGGTGGGATGCGCAAGCTGTGGATC
65 AACGAGCGGGCGGGCAGTG-GG-CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
***
1440739 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTT-CGTAGTGCCAATGCCATTTTTCCA
128 GATAGGGTGGTA-GTGGGTTTAGGCACATCTTCATATTTTGC-TA-TGCCAATGCCATTTTTATG
* *
1440803 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACGACTCATT
190 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* ** *
1440868 TTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGAGATTTCTCTAAAGCTTTTTCAGAAAG
255 TTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGAGATTT-TTTAAAATTTTTTCAGAAGG
*
1440933 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAATATTCA
319 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAATTCA
* * *
1440998 GCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACT
384 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
1441063 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
449 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
1441128 GGTTTGATGAGGGATCGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
514 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
1441193 GCACACCCGCCCTGGGCCCC-CAATCGCCGAAACCCCAATGCTGGCGGTCAGGTTCTCCGACGAT
579 GCACACCC-CCC--AGCCCCTCAATCGCCGAAACCCCAATGCCGGCGGTCAGGTTCT-CGAAGAT
* *
1441257 GCTCCAACGATGGTGCCCCGGGTGAAAAAAAATA-TGGCACCAGCACATGCCCGAGCCTAGCATG
640 GCTCCAACGATGGTGCCCCGGGCGAAAAAAAA-AGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * * *
1441321 TGCACCCGTAACCCTCGGTTCGGTTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAAGTTAA
704 TGCACCCGCAACACTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
*
1441386 CCCACGAAACGAGCGTGCAGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGG
769 CCCACGAAACGAGCGTACAGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGG
* *
1441451 TCAG-GT-CCCT-T-T-TAGC-ATTCTG-C-C-A
834 -CAGAGTCCCCTCTATCTACCGATCCTGCCGCTA
* **
1441476 CAACCCTCAGTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
1 CAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
*
1441541 ACGAGCGGGCGGGCAGGTGGGCACTACGTCGGCCAGAGAGGCGGGGTGCGCAAGCCGTGGATCGA
66 ACGAGCGGGCGGGCA-GTGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
1441606 TAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCATTTTTATGGCT
130 TAGGGTGGTAG-TGGGTTTAGGCACATCTTCATATTT-TGCTATGCCAATGCCATTTTTATGGCT
* *
1441671 TTTAAATTCATACAATGGTCCCTTAAGCCTTGATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
193 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
*
1441736 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAGGAGT
258 TATTTTTCATGATTTTTGAAACTTTTTACGATTCGAGATTTTTT-AAAATTTTTTCAGAAGGAGT
* * *
1441801 TTTGGCCCCAAACTCGGTAGATGTGATCCTTGTA-TTTTTTTTGGCATGCATAAAAAAATTCAGC
322 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCA-CAAAAAATTCAGC
* **
1441865 TAAAAACTCGAGGTGTACAAGATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTCAGACACTTT
386 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
1441930 AATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
451 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
1441995 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGC
516 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
*
1442060 ACACCCCCCGGCCC
581 ACACCCCCCAGCCC
1442074 ACCCAAACGT
Statistics
Matches: 1320, Mismatches: 115, Indels: 61
0.88 0.08 0.04
Matches are distributed among these distances:
862 5 0.00
864 22 0.02
865 510 0.39
866 12 0.01
867 69 0.05
868 5 0.00
869 3 0.00
871 1 0.00
872 1 0.00
873 2 0.00
874 216 0.16
875 251 0.19
876 32 0.02
877 188 0.14
878 3 0.00
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.27
Consensus pattern (866 bp):
CAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAA
ACGAGCGGGCGGGCAGTGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGTGGGTTTAGGCACATCTTCATATTTTGCTATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCATGATTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCAGCCCCTCAATCGCCGAAACCCCAATGCCGGCGGTCAGGTTCTCGAAGATGCTCCAACGAT
GGTGCCCCGGGCGAAAAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAAC
ACTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTACAGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCAGAGTCCCCTC
TATCTACCGATCCTGCCGCTA
Found at i:1444525 original size:26 final size:26
Alignment explanation
Indices: 1444489--1444541 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1444479 CCGGTTTGAT
1444489 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
1444515 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
1444541 C
1 C
1444542 GTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1449591 original size:730 final size:726
Alignment explanation
Indices: 1448195--1449638 Score: 2087
Period size: 730 Copynumber: 2.0 Consensus size: 726
1448185 GGAATGAACT
* * * *
1448195 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGGGAAGGATG
1 CCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGAAGGATG
* * * * ** *
1448260 TGCAAGCTTGGGATCGACTGAGTCCCCCTCTGCATGCTATCGATCCTACTACTACAACCCTCTAT
66 AGCAAGCCTAGGATCGACAGAGTCCCCCTCAACATGCTATCGATCCTACTACCACAACCCTCTAT
** * * * *
1448325 CTAGTTTGATCTTAGACTGGGAATGAACTACGCATGCCTAAGCCAATTGATGACACGAGCGGGCT
131 CTAGTCCGATCTTAGACTGCGAATGAACTACGCATGCCTAAGCCAACTGACGACACGAGCGGGCG
* **
1448390 GACGGGCACTACTCCGACCAGAGAGACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAAGCGG
196 GACGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGCGG
* *
1448455 GTTTAGGCACATCTTCGTATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAA
261 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCTTTCTTATGGCTTGTAAATTCATACAA
*
1448520 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
326 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
* ** ** * *
1448585 TTTAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGTGTTTTCGGCCCATACTTG
391 TTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCAGAAGAAGTTTTCGGACCAAACTTG
* * * * * * *
1448650 GTAGACGTGATCCTTGTATTTTTTTGGGCATGCACAAAAAAATTCAGCTAAATATTCGAAGTGTA
456 GTAGACGTGATCCTTGAATTTTTGTGAGCATGCACAAAAAAATTCAGCTAAAAACTCAAAATGTA
* * * * *
1448715 TAGGATTTTGTGACCATTTGAAAAAAGTGCCCCATTTTAGATACTTTAATGGTTACTGGCAGCGA
521 TAGGATTTTGTGACCATTTGAAAAAAGTGCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAA
1448780 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGG
586 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGG
* * *
1448845 GCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACAACATTTAAGCACACCCCCCGGCCCCCCA
651 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACAACATGTAAGCACACCCCCCGGCCCCCCA
1448910 ATCGTCGAAAC
716 ATCGTCGAAAC
* *
1448921 CCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGTACTCAGCCGGCCAGAGGGGCAGGATG
1 CCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGAAGGATG
* * *
1448986 CAG-AAGCCTAGGATCGATCAG-GTCCCCCTCAACGTGCT-GCTGATCCTACTACCGCAACCCT-
66 -AGCAAGCCTAGGATCGA-CAGAGTCCCCCTCAACATGCTATC-GATCCTACTACCACAACCCTC
* * * * *
1449047 TGGTCTGGTCCGATCTTAGATTGCGAATGAACT-CTGTATGCCTAAGCCAACTGACGAAACGCGC
128 T-ATCTAGTCCGATCTTAGACTGCGAATGAACTAC-GCATGCCTAAGCCAACTGACG--ACACG-
* * * *
1449111 AGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGT
188 A-GCGGGCGGACGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
1449176 GGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCCATGCCAATG-CTATTCTTATGGCTTGTAA
252 GGTAAGCGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCT-TTCTTATGGCTTGTAA
1449240 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
316 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
*
1449305 TTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTTAAATTTTTTCAGAAGAAGTTTT-GG
381 TTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCAGAAGAAGTTTTCGG
* *
1449369 AACCAAACTTGGTAGACGTGATCCTTGAATTTTTGTGAGCATGCATAAAACAATTCAGCTAAAAA
446 -ACCAAACTTGGTAGACGTGATCCTTGAATTTTTGTGAGCATGCACAAAAAAATTCAGCTAAAAA
1449434 CTCAAAATGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGC
510 CTCAAAATGTATAGGATTTTGTGACCATTTGAAAAAAGTG-CCCCAATTCAGACACTTTAATGGC
*
1449499 TACTGGCAGCAAACCTGTACAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
574 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* **
1449564 GAGGGATA-GGGG-CAATTATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACC
639 GAGGGATATGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCACACAACATGTAAGCACACC
1449627 CCCCGGCCCCCC
703 CCCCGGCCCCCC
1449639 TCAATCATCA
Statistics
Matches: 636, Mismatches: 69, Indels: 22
0.87 0.09 0.03
Matches are distributed among these distances:
725 3 0.00
726 146 0.23
727 3 0.00
728 4 0.01
729 8 0.01
730 381 0.60
731 91 0.14
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (726 bp):
CCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGAAGGATG
AGCAAGCCTAGGATCGACAGAGTCCCCCTCAACATGCTATCGATCCTACTACCACAACCCTCTAT
CTAGTCCGATCTTAGACTGCGAATGAACTACGCATGCCTAAGCCAACTGACGACACGAGCGGGCG
GACGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGCGG
GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCTTTCTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
TTGAAACTTTTTATGGTTCAGGATTTTTTAAAATTTTTTCAGAAGAAGTTTTCGGACCAAACTTG
GTAGACGTGATCCTTGAATTTTTGTGAGCATGCACAAAAAAATTCAGCTAAAAACTCAAAATGTA
TAGGATTTTGTGACCATTTGAAAAAAGTGCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCACACAACATGTAAGCACACCCCCCGGCCCCCCA
ATCGTCGAAAC
Found at i:1454177 original size:26 final size:26
Alignment explanation
Indices: 1454141--1454192 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1454131 TGGTCTGATG
*
1454141 TTAGACTGGGAAGGAACTCCTTATGC
1 TTAGACTGGGAAGGAACTCCGTATGC
*
1454167 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAAGGAACTCCGTATGC
1454193 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAAGGAACTCCGTATGC
Found at i:1455142 original size:844 final size:856
Alignment explanation
Indices: 1448921--1455618 Score: 7679
Period size: 874 Copynumber: 7.7 Consensus size: 856
1448911 TCGTCGAAAC
*
1448921 CCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGG-GTACTCAGCCGGCCAGAGGGGCAGGAT
1 CCGTATGCCTAAGTC-AACC-CGAAATGAGCGTGCGGCG--CTCAGCCGGCCAGAGGGGCAGGAT
* * * * ** * * *
1448985 GCAG-AAGCCTAGGATCGATCAGGTCCCCCTCAACGTGCTGCTGATCCTACTACCGCAACCCTTG
62 GC-GCAAGCCGAGGATCG-GCCGG--CCCCTCAGCGTGCTGCCAATCCTGCT-GC-CAACCCTCG
* * * * * * *
1449049 GTCTGGTCCGATCTTAGATTGCGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACGCGCAGG
121 GTCTGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGG
*
1449114 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGT
186 CGGGCGGGC-GGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
1449179 AGGTGGGTTTAGGTACATCTTCATATTTCTGCCATGCCAATGCTATTCTTATGGCTTGTAAATTC
249 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
1449244 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
314 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * **
1449309 CGATTTTTGAAACTTTTTATGGTTC-AGGATTTTTTT-AAATTTTTTCAGAAGAAGTTTTGGAAC
379 CGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCC
* * *
1449372 CAAACTTGGTAGACGTGATCCTTGAATTTTTG-TGAGCATGCATAAAACAATTCAGCTAAAAACT
443 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG-GCATGCACAAAAAAATTCAGCTAAAAACT
* * * *
1449436 CAAAATGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTA
507 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
1449501 CTGGCAGCAAACCTGTACAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
572 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGA
*
1449566 GGGATA-GGGG-CAATTATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC
636 GGGATAGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * *
1449629 CCGGCCCCCCTCAATCATCAGAACCACAATGCCGTCGGTCAGGTTCTCTGAC-ATTGGTCCGGCG
699 CC--CCCCCC-C-ATCGTC-GAACCCCAATGCCGTCGGTCAGGTTCTCTGACGA-TGCTCCGGCG
* * * * *
1449693 ATGGTACCCCGGGCGAAAAAATATACGGCACCAGCACATGCTCGAGCCCAGCATATGCACCGGCA
758 ATGGTGCCCC-GG-GAAAAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCGCA
*
1449758 ACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACT
820 ACCCTCGGTCTGGTCC-ATCTTAGACTGGGAATGAACT
* * * * *
1449796 CCGTATACCTAAGTCAACCCACAGAATGAACGTGCAGGCACTCAGTCGGCCAGAGGGGCAGGATG
1 CCGTATGCCTAAGTCAACCC-GA-AATGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCAGGATG
* * * * ** * *
1449861 CGGAAGTC-AGGGATCGGCCGGGTCCCCCTCAACGTGCTACCAATTTTGCTACCGTAACCCTCAG
63 CGCAAGCCGA-GGATCGGCC-GG--CCCCTCAGCGTGCTGCCAATCCTGCTGCC--AACCCTCGG
* * * * *
1449925 TCCG-GTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAACGGG
122 TCTGATTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGG
* * * * *
1449989 TGAGC--G-GGCACTACGCCAGCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGGTGGTA
186 CGGGCGGGCGGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
1450051 GGTGGGTTTAGGCACATCTTCATATTTCTCCCACGCCAATGCCATTTTTATGGCTTGTAAATTCA
250 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
1450116 TACAACGGTCCCTTTAGCCTTCATGTCAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAC
315 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
*
1450181 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAACTTTTTT-AGAAGGAGTTTTGGCCCC
380 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAA-TTTTTTCAGAAGGAGTTTTGGCCCC
* * * *
1450245 AAACTTGGTCA-ACGGGATCATTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAACACCTC
444 AAACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
1450309 GAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGGTCCCCATTTCAGACACTTTAATGGCCT
508 GAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT-GTCCCCATTTCAGACACTTTAATGG-CT
*
1450373 ACTTGCAGCCAAACCTGTAAAATCTCAAATGCTCTTTTAAGGCGGTGTGAGTTCTCGAGG-TTGA
571 ACTGGCAG-CAAACCTGTAAAATCTCAAATGCTC-TTTAAGG-GGTGTGAGTTCTCGAGGTTTGA
*
1450437 TGAAGGATAGGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
633 TGAGGGATAGGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
* * * * *
1450502 CCCCCGGCCCCCCCAATCGCCGGAACCCCACTGTCGTTGGTCAGGTTCTCTGACGATGCTCCGGT
696 CCCCC--CCCCCCC-ATCGTC-GAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGC
* * * *
1450567 GATGGTGCCCCGAAAGAAAAAAAATGC-GCATCAGCACATGCTCGAG-TCAGCATGTGCA-CCAC
757 GATGGTGCCCCG--GGAAAAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCGC
** *
1450629 AACCCTC-GTCCAGTCCGATCTTAGATTGGGAATGAACT
819 AACCCTCGGTCTGGTCC-ATCTTAGACTGGGAATGAACT
* *
1450667 -CATATGCCTAA-TCAACCCACGAAACGAGCGTG-GGCGCTCAG-CGGCCAGAGGGGCAGGATGC
1 CCGTATGCCTAAGTCAA-CC-CGAAATGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * * * * *
1450728 GCAAGCAGGGGATCGGTCGGGTCCCTTCAG-GTGCTG-C-ATCTTCACTG-CAACCCTTGGT-TG
64 GCAAGCCGAGGATCGG-CCGG-CCCCTCAGCGTGCTGCCAATCCT-GCTGCCAACCCTCGGTCTG
* * * * * *
1450788 GTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAG-CAA-GGAC-AAACGATTCGGCGGCG
126 ATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA-GC-G-GGCG
* *
1450850 GAG-GGGCGGGCACTACTGCCGGTC-GAGAGAGCGTGATGCGCAAGCCGTGGCATCGGATAGGGT
188 G-GCGGGC-GGCACTAC-G-CGGCCAGAGAG-GCGGGATGCGCAAGCCGTGG-ATC-GATAGGGT
*
1450913 GGTAGGT-GGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAA
246 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAA
1450977 -TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTCTATTT
311 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTT
1451041 TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
375 TTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
* * *
1451106 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACCAAAAA
440 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
1451171 CTCGAGGTGTACAGGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGC
505 CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
1451236 TACTGGCAGCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
570 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGAT
*
1451301 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTTCGCACACCC
634 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * *
1451366 CCCTGGCCCCCAACAATCGTTGGAACCCCAATGCCATCGGTCAGTTTCT-TCGACAATGCTCCGA
699 CCC---CCCCC--C-ATCG-TCGAACCCCAATGCCGTCGGTCAGGTTCTCT-GACGATGCTCCGG
* * * *
1451430 CGATGGTGCCTCGAGAGAAAATAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCA
756 CGATGGTGCCCCG-G-GAAAAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCG
* * **
1451495 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATTTACT
818 CAACCCTCGGTCTGGTC-CATCTTAGACTGGGAATGAACT
* * * *
1451535 CTGTATGCCTAAGTCAACCCATGAAACGAGAGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATG
1 CCGTATGCCTAAGTCAACCC--GAAATGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCAGGATG
* * * * * * * * * *
1451600 TGCAAGCCGGGGATCGATCGGGTCCCCCTCAGTGTGCTAG-CGATCTTGCTACCGGAACCTTCAG
63 CGCAAGCCGAGGATCG-GCCGG--CCCCTCAGCGTGCT-GCCAATCCTGCTGCC--AACCCTCGG
* *
1451664 TCCGGATCCGATCTTAGACTGGGAATGAACTCTC-TATGCCTAAGCCAACTGACGAAACGAGCGG
122 T-CTGATTCGATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCCAACTGACGAAACGAGCGG
1451728 GCGGAGC--G-GGCACTACGCGGCCAGCAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGGTG
185 GCGG-GCGGGCGGCACTACGCGGCCAG-AGAGGCGGGATGCGCAAGCCGTGGATCGATA-GGGTG
*
1451790 GTAGGT-GGTTTAGGCACATCTTCATATTT-TTCCATGCCAATGCCATTTTTATGGCTTGTAAAT
247 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
1451853 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTCTA-TTTT
312 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
*
1451917 CAATGATTTTTGAAACTTTTTACGGTTCG-GATTTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
377 C-ACGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
*
1451981 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-CAAAAAAATTCAGCTAAAAA
440 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
1452045 CTCGAAGTGTACAGGATTTTGTGACCCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGG
505 CTCGAAGTGTACAGGATTTTGTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
1452110 CTACT-GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
569 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGA
* * *
1452174 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCACACGCC
633 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
1452239 CCCCTCAGCCCCCTAATCGTCGGAACCCCAATGCCGTCGGTCAGTTTCTCTAACGAAGCTCCGGC
698 CCCC-C--CCCCC--ATCGTC-GAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGC
* * *
1452304 GATGGTGGCCCGAGCGAAAAAAAAATGCGACACCAGCACATGCTCGAGCCCAGCCTGTGCACCCG
757 GATGGTGCCCCG-G-G-AAAAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCACCCG
* *
1452369 CATCCCGT-GGTCTGATCCGATCTTAGACTGGGAATGAACT
818 CAACCC-TCGGTCTGGTCC-ATCTTAGACTGGGAATGAACT
* * * * *
1452409 CCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCAGGCGTTCAGCCAGCCTGAAGGGTAGGATG
1 CCGTATGCCTAAGTCAACCC--GAAATGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCAGGATG
* * * * * * *
1452474 CGCGAGCCGGGGATCGGTCAGGTCCCCCTCAGCGTGCTACCGATCTTGCTGTCGCAACCCTTGGT
63 CGCAAGCCGAGGATCGG-CCGG--CCCCTCAGCGTGCTGCCAATCCTGCTG-C-CAACCCTCGGT
* * * * *
1452539 -TCGGTTCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGC
123 CT-GATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGC
* * *
1452603 AGGGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGTTACGGTG
187 ---GGGCGGGC-GGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTG
1452668 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
247 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
1452733 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
312 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
*
1452798 CATGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTTAAAATTTTTT-AGAAGGAGTTTTGGC
377 CACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGC
1452861 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
441 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
1452926 TCGAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
506 TCG-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
1452991 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
570 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGAT
1453056 GAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
634 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
*
1453120 CCCGGCCCCCCAATCGTCGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGGCGATG
699 CCC--CCCCCC-ATCGTCGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATG
* * * **
1453184 GTGCCCCGGGCGAAAAAAATGTGGCACCAGCACATGCCTGAGCCTAGCATGTGCACCCATAACCC
761 GTGCCCCGGG-AAAAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCACCCGCAACCC
* *
1453249 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
824 TCGGTCTGGTC-CATCTTAGACTGGGAATGAACT
* * * *
1453283 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGTGCTCAGCCGGCCATAAGGGCAGGATG
1 CCGTATGCCTAAGTCAA-CC-CGAAATGAGCGTG-CGGCGCTCAGCCGGCCAGAGGGGCAGGATG
** * * * *
1453348 CGCAAGTTGAGGATTGGCCGGGTCCCCCTCAGTGTGCTGCCTATCCTGCTGCTGCAACCCTTGGT
63 CGCAAGCCGAGGATCGGCC-GG--CCCCTCAGCGTGCTGCCAATCCTGCTGC--CAACCCTCGGT
* * * * * * *
1453413 TTGCTAT-GATCTTAGACTAGGAATGAACT-CGTACGCCTAAGCCAACCGACGAAATGAGCGAGC
123 CTGAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGC
* ** * * *
1453476 GGGTGGGCGGGTGCTACGTCGGCCAGAGAGGTGGGATGTGCAAGCCGTGGATCGATATGGTGGTA
187 GGGCGGGC-GGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
1453541 GGTGAGTTTAGGCACATCTTCATATTTTCTGCCATGCCAATGCCATTTTAATGGCTTGTAAATTC
250 GGTGGGTTTAGGCACATCTTCATA-TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
1453606 ATAC-ATGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTTA
314 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
1453670 TGATTTTTGAAACTTTTTACTGTTTGGGATTTTTTTAAAATTTTTTCAGAATGAGTTTTGGCCCC
379 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
* * * *
1453735 AAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAATTCAACTAAAAACTTG
444 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
1453800 AAATGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATT
509 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
** * * * * *
1453865 GGCAATAAACTTGTAAAAACTCAAAAT-TTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGAGGAG
574 GGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
1453929 GGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATTGCACATCATGTGCGCACATACCCC
637 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC--ACCCC
* * * * * * * *
1453994 TGGCCCCCTCAATCATCGAAACCCCAATGCTGCCGGTCAGGTTTTCAGGCGATGCTCCGGCGATG
700 ---CCCCCCCCATCGTCG-AACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATG
* * * *
1454059 GTGGCCCGGATGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCGTAACC
761 GTGCCCCGG--GAAAAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCGCAACC
* * * *
1454124 CTCAGTCTGGTCTGATGTTAGACTGGGAAGGAACT
823 CTCGGTCTGGTC-CATCTTAGACTGGGAATGAACT
* * ** * * * * *** ***
1454159 CCTTATG-CTTAG---ACTGGGAATGAAC-TCCGTATGC-CTAAGTCAACCCACGAAACG-AGCG
1 CCGTATGCCTAAGTCAACCCGAAATGAGCGTGCG---GCGCTCAG-CCGGCCA-GAGGGGCAG-G
* * * * ** * * ***
1454217 -TGCACCTCAG-CG-TG-T-TGCC-G-ATCT-TGC-TGCCG-CAA-CC--CT--C-GGTC-CGGT
60 ATGC-GC-AAGCCGAGGATCGGCCGGCCCCTCAGCGTGCTGCCAATCCTGCTGCCAACCCTCGGT
** * * * * ** *
1454265 CTGATCTCTAGA-CTGGGAAT--GAACTCTGTAA-GCC-TAAGCC-CA-CCGATGAAAGAGCG-G
123 CTGAT-TC--GATCTTAGACTGGGAA---TG-AACTCCGTATGCCTAAGCC-A--ACTGA-CGAA
* * * * * *
1454322 GCGGGCGGG-GGGACTACGGGCCAGAG-A-GACG-GG--ATGCGCAAGCTGTGGAT-C-AATAG-
177 ACGAGCGGGCGGG----CGGG-C-G-GCACTACGCGGCCA-GAG-AGGC-G-GGATGCGCA-AGC
* * * * * * **
1454378 GGTGG-TAGGT-GGGT-TTA---GGC-------ACATCTTCATATTTCTACTGTGCCAATGCCAT
230 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
1454430 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
295 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
1454495 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTT-AAATTTTTT
360 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT
* *
1454559 CAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCAC-AAA
425 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
1454623 AAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
490 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
1454688 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGTGTGAGT
555 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGT
*
1454752 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
620 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
1454817 ATGTGCGCACA-CCCCCCCCCCC-T-GTCGAACCCTAATGCCGCCGGTCAGGTTCTC-GACGATG
685 ATGTGCGCACACCCCCCCCCCCCATCGTCGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATG
* * *
1454878 CTCCGACGATGGTGCCCCGGGCAAAAAAAATACGGCACCAGCACATGCCCAGCCCAGCATGTGCA
750 CTCCGGCGATGGTGCCCCGGG-AAAAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCA
* * **
1454943 CCTGTAACCCTCGGTC-CATCCATCTTAGACTGGGAATGAACT
814 CCCGCAACCCTCGGTCTGGTCCATCTTAGACTGGGAATGAACT
* *
1454985 CCGTATGCCTAAGTCAACCCGAAATGAGCGTGCGGCGCTCAGTCGGTCAGAGGGGCAGGATGCGC
1 CCGTATGCCTAAGTCAACCCGAAATGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGC
1455050 AAGCCGAGGATCGGCCGG-CCCTCAGCGTGCTGCCAATCCTGCTGCCAACCCTCGGTCTGATTCG
66 AAGCCGAGGATCGGCCGGCCCCTCAGCGTGCTGCCAATCCTGCTGCCAACCCTCGGTCTGATTCG
* * * *
1455114 ATC-TAGACTGGGAATGAACTCCGTAAGCCTAAGGCAA--GACGAAA-GAAC-GG-GGGCGAGCG
131 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGC-
*
1455173 GGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTT
195 GGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
1455238 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
259 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
1455303 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
324 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* *
1455368 AACTTTTTACGATTCGAGA-TTTTTT-AAATTTTTTCAGAAGGAGTTTTGG-CCTAAACTT-GTA
389 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
1455429 GACGTGATCCTTGTATTTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGTAGTGTATT
454 GACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA-C
1455494 AGGATTTTGTGACCA-TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
517 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-A
*
1455558 AACCTGTAAAATTCTTAAATGCTC-TTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
581 AACCTGTAAAA-TCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGAT
1455619 TGTAGACACC
Statistics
Matches: 5055, Mismatches: 524, Indels: 517
0.83 0.09 0.08
Matches are distributed among these distances:
826 27 0.01
827 14 0.00
828 44 0.01
829 40 0.01
830 40 0.01
831 40 0.01
832 9 0.00
833 15 0.00
834 15 0.00
835 4 0.00
836 2 0.00
837 12 0.00
838 12 0.00
839 4 0.00
840 87 0.02
841 31 0.01
842 132 0.03
843 209 0.04
844 274 0.05
845 12 0.00
846 29 0.01
851 1 0.00
852 10 0.00
853 3 0.00
854 10 0.00
855 16 0.00
856 21 0.00
857 15 0.00
858 9 0.00
859 47 0.01
860 14 0.00
861 9 0.00
862 83 0.02
863 62 0.01
864 154 0.03
865 255 0.05
866 67 0.01
867 21 0.00
868 26 0.01
869 27 0.01
870 335 0.07
871 425 0.08
872 149 0.03
873 226 0.04
874 637 0.13
875 474 0.09
876 280 0.06
877 48 0.01
878 29 0.01
879 130 0.03
880 267 0.05
881 138 0.03
882 5 0.00
883 4 0.00
884 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (856 bp):
CCGTATGCCTAAGTCAACCCGAAATGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGC
AAGCCGAGGATCGGCCGGCCCCTCAGCGTGCTGCCAATCCTGCTGCCAACCCTCGGTCTGATTCG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCG
GCACTACGCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCCCATCGTCGA
ACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGGGAAAAAAAATG
CGGCACCAGCACATGCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCCATCTTAGACT
GGGAATGAACT
Found at i:1455703 original size:7 final size:6
Alignment explanation
Indices: 1455690--1455754 Score: 51
Period size: 6 Copynumber: 9.8 Consensus size: 6
1455680 AATTCGGTTC
*
1455690 TTATTT TGTATTTT TTATTT TTATTT TT-TTT TTATATT TTAGGCATT
1 TTATTT T-TA-TTT TTATTT TTATTT TTATTT TTAT-TT TTA---TTT
1455737 TTATTAT TTATTT TTATT
1 TTATT-T TTATTT TTATT
1455755 ACTATGTATT
Statistics
Matches: 49, Mismatches: 2, Indels: 16
0.73 0.03 0.24
Matches are distributed among these distances:
5 5 0.10
6 20 0.41
7 15 0.31
8 4 0.08
9 5 0.10
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.75
Consensus pattern (6 bp):
TTATTT
Found at i:1455716 original size:13 final size:14
Alignment explanation
Indices: 1455690--1455729 Score: 57
Period size: 13 Copynumber: 3.0 Consensus size: 14
1455680 AATTCGGTTC
*
1455690 TTATTTTGTATTTT
1 TTATTTTATATTTT
1455704 TTATTTT-TATTTT
1 TTATTTTATATTTT
1455717 TT-TTTTATATTTT
1 TTATTTTATATTTT
1455730 AGGCATTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 4 0.16
13 14 0.56
14 7 0.28
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (14 bp):
TTATTTTATATTTT
Found at i:1455721 original size:11 final size:12
Alignment explanation
Indices: 1455690--1455754 Score: 51
Period size: 16 Copynumber: 4.9 Consensus size: 12
1455680 AATTCGGTTC
1455690 TTATTTTGTATTTT
1 TTATTTT-TA-TTT
1455704 TTATTTTTATTT
1 TTATTTTTATTT
1455716 TT-TTTTTATATT
1 TTATTTTTAT-TT
*
1455728 TTAGGCATTTTATTAT
1 TTA---TTTTTATT-T
1455744 TTATTTTTATT
1 TTATTTTTATT
1455755 ACTATGTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
11 7 0.16
12 9 0.21
13 9 0.21
14 7 0.16
15 1 0.02
16 10 0.23
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.75
Consensus pattern (12 bp):
TTATTTTTATTT
Found at i:1455873 original size:18 final size:20
Alignment explanation
Indices: 1455818--1455873 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
1455808 TATTTATATG
1455818 TATTTATT-TTTATAGTTATA
1 TATTTATTATTTATA-TTATA
1455838 TATTTATTA-TTATATTATA
1 TATTTATTATTTATATTATA
1455857 -ATTTATTATTTAT-TTAT
1 TATTTATTATTTATATTAT
1455874 TTTTTTTATC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
18 12 0.35
19 9 0.26
20 13 0.38
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (20 bp):
TATTTATTATTTATATTATA
Found at i:1455923 original size:21 final size:22
Alignment explanation
Indices: 1455893--1455962 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
1455883 CTTGTAATAT
*
1455893 TTTTTGGATTTATCTTATTTTA
1 TTTTTCGATTTATCTTATTTTA
1455915 TTTTT-GA-TTATCAGTTATTTT-
1 TTTTTCGATTTATC--TTATTTTA
*
1455936 TTTTTCG-TTTATCTGATTATTA
1 TTTTTCGATTTATCTTATT-TTA
1455958 TTTTT
1 TTTTT
1455963 TTTCTTTTTT
Statistics
Matches: 41, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
20 9 0.22
21 9 0.22
22 23 0.56
ACGTcount: A:0.17, C:0.06, G:0.09, T:0.69
Consensus pattern (22 bp):
TTTTTCGATTTATCTTATTTTA
Found at i:1467083 original size:9 final size:9
Alignment explanation
Indices: 1467056--1467105 Score: 75
Period size: 9 Copynumber: 5.6 Consensus size: 9
1467046 ACTATGCTTG
1467056 AAAAAAT-A
1 AAAAAATGA
*
1467064 AAAAAGGTGA
1 AAAAA-ATGA
1467074 AAAAAATGA
1 AAAAAATGA
1467083 AAAAAATGA
1 AAAAAATGA
1467092 AAAAAATGA
1 AAAAAATGA
1467101 AAAAA
1 AAAAA
1467106 CCCTAAAAGG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
8 5 0.13
9 27 0.71
10 6 0.16
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (9 bp):
AAAAAATGA
Found at i:1468164 original size:41 final size:41
Alignment explanation
Indices: 1468091--1468199 Score: 164
Period size: 41 Copynumber: 2.6 Consensus size: 41
1468081 TTTGTCAAGA
*
1468091 AGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTAGAGG
1 AGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTAGAGG
1468133 AGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGG
1 AGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGG
*
1468174 AGCAATTTTATTTTTCTCAAAGTCGT
1 AGCAA-TTTA-CTTTC-CAAAGTCGT
1468200 TGAGCCATTG
Statistics
Matches: 62, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
41 30 0.48
42 19 0.31
43 4 0.06
44 9 0.15
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (41 bp):
AGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGG
Found at i:1468212 original size:44 final size:41
Alignment explanation
Indices: 1468091--1468220 Score: 154
Period size: 41 Copynumber: 3.1 Consensus size: 41
1468081 TTTGTCAAGA
* *
1468091 AGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTAGAGG
1 AGCAATTTACTTTCC-AAAGTCGTGGAGCCTCTGTTTAGAGG
*
1468133 AGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGG
1 AGCAATTTACTTTCCAAAGTCGTGGAGCCTCTGTTTAGAGG
* * *
1468174 AGCAATTTTATTTTTCTCAAAGTCGTTGAGCCAT-TGTTTATAGG
1 AGCAA-TTTA-CTTTC-CAAAGTCGTGGAGCC-TCTGTTTAGAGG
1468218 AGC
1 AGC
1468221 TTTGTTCAAA
Statistics
Matches: 79, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
41 30 0.38
42 19 0.24
43 4 0.05
44 25 0.32
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.36
Consensus pattern (41 bp):
AGCAATTTACTTTCCAAAGTCGTGGAGCCTCTGTTTAGAGG
Found at i:1468238 original size:6 final size:6
Alignment explanation
Indices: 1468227--1468276 Score: 54
Period size: 6 Copynumber: 9.0 Consensus size: 6
1468217 GAGCTTTGTT
* *
1468227 CAAAAA CAAAAA CAAAAA -AATAA -AAAAA CAAAAA -ATAAA -AAAAA
1 CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA
1468271 CAAAAA
1 CAAAAA
1468277 AGTGAAAATG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
5 16 0.42
6 22 0.58
ACGTcount: A:0.86, C:0.10, G:0.00, T:0.04
Consensus pattern (6 bp):
CAAAAA
Found at i:1468252 original size:15 final size:17
Alignment explanation
Indices: 1468229--1468277 Score: 66
Period size: 16 Copynumber: 2.9 Consensus size: 17
1468219 GCTTTGTTCA
1468229 AAAACAAAAACAAAAAA-
1 AAAA-AAAAACAAAAAAT
*
1468246 ATAAAAAAACAAAAAAT
1 AAAAAAAAACAAAAAAT
1468263 -AAAAAAAACAAAAAA
1 AAAAAAAAACAAAAAA
1468278 GTGAAAATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 26 0.90
17 3 0.10
ACGTcount: A:0.88, C:0.08, G:0.00, T:0.04
Consensus pattern (17 bp):
AAAAAAAAACAAAAAAT
Found at i:1468255 original size:16 final size:17
Alignment explanation
Indices: 1468234--1468277 Score: 74
Period size: 16 Copynumber: 2.7 Consensus size: 17
1468224 GTTCAAAAAC
1468234 AAAAACAAAAAAAT-AA
1 AAAAACAAAAAAATAAA
1468250 AAAAAC-AAAAAATAAA
1 AAAAACAAAAAAATAAA
1468266 AAAAACAAAAAA
1 AAAAACAAAAAA
1468278 GTGAAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.27
16 14 0.54
17 5 0.19
ACGTcount: A:0.89, C:0.07, G:0.00, T:0.05
Consensus pattern (17 bp):
AAAAACAAAAAAATAAA
Found at i:1468275 original size:8 final size:8
Alignment explanation
Indices: 1468234--1468277 Score: 63
Period size: 8 Copynumber: 5.5 Consensus size: 8
1468224 GTTCAAAAAC
1468234 AAAAACAA
1 AAAAACAA
*
1468242 AAAAATAA
1 AAAAACAA
1468250 AAAAACAA
1 AAAAACAA
1468258 AAAATA-AA
1 AAAA-ACAA
1468266 AAAAACAA
1 AAAAACAA
1468274 AAAA
1 AAAA
1468278 GTGAAAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 1 0.03
8 30 0.94
9 1 0.03
ACGTcount: A:0.89, C:0.07, G:0.00, T:0.05
Consensus pattern (8 bp):
AAAAACAA
Found at i:1468411 original size:21 final size:23
Alignment explanation
Indices: 1468377--1468419 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
1468367 TCGATTCTTA
1468377 TTTTGTATTATTTTTAT-TTTTG
1 TTTTGTATTATTTTTATATTTTG
*
1468399 TTTT-TATTTTTTTTATATTTT
1 TTTTGTATTATTTTTATATTTT
1468420 AGGCATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.81
Consensus pattern (23 bp):
TTTTGTATTATTTTTATATTTTG
Found at i:1468481 original size:4 final size:4
Alignment explanation
Indices: 1468472--1468564 Score: 55
Period size: 4 Copynumber: 21.5 Consensus size: 4
1468462 TATGTATATC
*
1468472 TTTA TTTA TTTA TTTA TTGT- TTTG TTAATA TTTA TATGTA TTTTA TTTA
1 TTTA TTTA TTTA TTTA TT-TA TTTA TT--TA TTTA T-T-TA -TTTA TTTA
* * *
1468521 TATA GTTA TATA TTTA -TTA TTATA TTATAA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TT-TA TT-T-A TTTA TTTA TTTA TT
1468565 ATTATTATTT
Statistics
Matches: 72, Mismatches: 7, Indels: 20
0.73 0.07 0.20
Matches are distributed among these distances:
3 4 0.06
4 47 0.65
5 11 0.15
6 9 0.12
7 1 0.01
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:1468545 original size:14 final size:14
Alignment explanation
Indices: 1468515--1468578 Score: 55
Period size: 13 Copynumber: 4.7 Consensus size: 14
1468505 ATATGTATTT
1468515 TATTTATATAGTTATA
1 TATTTAT-TA-TTATA
1468531 TATTTATTATTATA
1 TATTTATTATTATA
* * *
1468545 T-TATAAT-TTATT
1 TATTTATTATTATA
1468557 TATTTATTATTAT-
1 TATTTATTATTATA
1468570 TATTT-TTAT
1 TATTTATTAT
1468579 CTTGTAATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
12 9 0.22
13 13 0.32
14 10 0.24
15 2 0.05
16 7 0.17
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (14 bp):
TATTTATTATTATA
Found at i:1468622 original size:43 final size:42
Alignment explanation
Indices: 1468554--1468636 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 42
1468544 ATTATAATTT
1468554 ATTTATTTATTATTATTATTTTTATCT-TGTAATATTTTTTGG
1 ATTTATTTATTATTATTATTTTTATCTGT-TAATATTTTTTGG
*
1468596 ATTTATCTTATT-TTATT-TTTGATTATCTGTTATTATTTTTT
1 ATTTAT-TTATTATTATTATTT--TTATCTGTTAATATTTTTT
1468637 TTTCTTTTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
41 3 0.08
42 11 0.31
43 21 0.58
44 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.06, T:0.69
Consensus pattern (42 bp):
ATTTATTTATTATTATTATTTTTATCTGTTAATATTTTTTGG
Found at i:1469449 original size:25 final size:26
Alignment explanation
Indices: 1469406--1469457 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
1469396 CCGGTCCGAT
1469406 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1469432 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1469457 C
1 C
1469458 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1471427 original size:878 final size:883
Alignment explanation
Indices: 1469195--1480480 Score: 7021
Period size: 875 Copynumber: 12.7 Consensus size: 883
1469185 ACGTTATGAC
* *
1469195 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCGTGTGCGCACA-CCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* ** * * * **
1469259 CCCGACCCCCCAATCACCAGAACCCTAATGCCGCCGGTCAGGTTCTCC-AGCGATGCTCCGGTGA
66 CCCGGCCCCCCAATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGA-CGATGCTCCGACGA
** * * * **
1469323 TGGTGCCCCGGGTGAAAAAAAATAG-GGCACCAGTACATGCTCGAGCCCAGCATGCGCACCCACA
130 TGGTG-CCCGGGCAAAAAAAAAT-GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCA
*
1469387 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACTC
193 A-CCTC-GT-C-G-ACGATC----AC---G-ATG-A-TCCA-ATGCTTAGACTGGGAATGAACTC
*
1469451 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGC
242 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * *
1469516 GCAAGCCGAGGGATCGATCGGGTCCCCCTCAGCGTGCTGCTGATCTTGCTGCCATAACCCTCGGT
307 GCAAGCCGA-GGATCGATCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGT
* * * * * * *
1469581 CTTGTCCAATCTTAGACTGGGAATTAACTCCGGATTCCTAAGACAACCGACGAAATGAGCGGGCG
371 CTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * * * *
1469646 GGCGGGCAGGCACTACGCC-AGCGAGAGAGGCAGGATGCGTAAACAGTGGATCGATAGGTTGGTA
436 AGCGGGCGGGCACTACGCCGA-CCAGAGAGGCGGGATGCGTAAGCAGTGGATCGATAGGGTGGTA
** * **
1469710 GGTGGGTTTAGGCACATCTTCATATTTCAT-CTTTTCCAATGCTGTATTTATGGCTTGTAAATTC
500 GGTGGGTTTAGGCACATCTTCATATTTC-TGCCATGCCAATGCCAT-TTTATGGCTTGTAAATTC
*
1469774 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCA
563 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
1469839 CGATTTTTGAAACTTTTTATGGTTCAAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCAA
628 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * * * *
1469904 AAGTTGGTAGATGCGATACTTGTATATTTTGTGGGCATGCACAAAAAAATTTAGCTAAAAACTTG
693 AACTTGGTAGACGTGATACTTGTAT-TTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
1469969 AAGTGTATA-CATTTTTGTGACCATTTGAAAAAAGTG-CCCCATTCCAGACACTTTAATGGCTAC
757 AAGTGTATAGGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTAC
* * *
1470032 TAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
821 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
1470095 AGGGATAGTGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * *
1470160 CTCGGCCCCCCCAATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACAATGCTCCGACGA
66 CCCGG-CCCCCCAATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGCTCCGACGA
* ** * ** ** *
1470225 TGGCGCCCCGGGTGAAAAAAAATACGGCACCAGCACATGCTTGAGCATAGCATGTGCACCTGTAA
130 TGGTG-CCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAA
*
1470290 CC-C-TCG--G-TC-CG--G-TCCGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
194 CCTCGTCGACGATCACGATGATCCAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
1470345 CCATGAAACGTGCGTGCGGGCGCTCAGCCGGCCAGAGTGGCAGGATGCGCAAGTCGGGGATCGAC
259 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGAT
* * * * * * * * *
1470410 CAGGTCCCCCTCAGTGTGCTACCGATCCTGCTACCACAACACTCAGTTTGGTTTGATCTTAGACT
324 CGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTAATCTTAGACT
* * * *
1470475 GGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGAGCGGGAGGGCACTACGT
389 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGC
* * *
1470540 CGGCCAGAGAGGCGGGATGCGTAAGCTGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCT
454 CGACCAGAGAGGCGGGATGCGTAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
1470605 TCATATTTCTGCCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
519 TCATATTTCTGCCATGCCAATGCCATTTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
** *
1470670 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGC
583 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * *
1470735 AGTTTGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-C
648 GGTTCGAGA-TTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATAC
* *** * *
1470799 TTCGTATTTTTTTTCACATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTG
712 TT-GTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTG
* * *
1470864 ACCATTTCAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTGGCTGCAAACTTGTAAAAT
776 ACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
1470929 CTCAAATGGTCCTTAAAGGGGTGTGAGTTCTCGAGGTTTGATA
841 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * * * * * *
1470972 AGGGAAAGAGGGTCAATTTAAGGGCCAAATACCAGCACCAATCGTAAATCATGTGCGCACACCCT
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-
** * * *
1471037 CCCCGGCCTCCCCAATCGTCGGAACCCCAATGCCTCCAATCAGGTTCTCCGATGATGCTCCGGCA
65 CCCCGGCC-CCCCAATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGCTCCGACG
*
1471102 ATGGTGCCCTAGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCA
129 ATGGTGCCC-GGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCA
*
1471167 ACC-C-TC-A-G-TC-C-A-G-TTCAAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
193 ACCTCGTCGACGATCACGATGATCCAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
1471222 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATTGG
258 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGA
* * * * * *
1471287 TCGGGTCCCCCTCAGCATGCTGCCGATCCTACTGTCGCAACCCTCGGT-TCAGTCTAAACTTAGA
323 TCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCT-GGTCTAATCTTAGA
* * * * * *
1471351 CTAGGAATAAACTCCGTACGCCTAAGCCAACCGATGAAACGAGCGGGCGAGTGGGCGGGCACTAT
387 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTAC
* * *
1471416 GCCGACCAGAGAGGCAGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
452 GCCGACCAGAGAGGCGGGATGCGTAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
1471481 CTTCATATTTCTGCCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATCCAATGGTCCCTGAAG
517 CTTCATATTTCTGCCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
1471546 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT-T-TTTTTCACGCTTTTTGAAACTTTTT
581 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * ** *
1471609 ACGGTTCCAGATTTTTTTAACTTTTTTCAGAAGGGGTTTCAGCCCCAAACTTGGTAGACGTGATC
646 ACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATA
* * * *
1471674 CTTGTATTTTTTTGGGCATGCACATAAAAATTTAGCTAAAAACTCGAAGTGCATAGGATTTTGTG
711 CTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTG
* *
1471739 ACCATTTGAAAAAAGTGTCCCC-TTTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAA
776 ACCATTTGAAAAAAGTGTCCCCATTCT-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
1471803 TCTCAAATGCTCTTTAAAGAGGTGTGAGTTCTCAAGGTTTGATG
840 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
1471847 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGCACACCCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* ** * * * * * **
1471912 CCGGGCCCATCAATCATCAGAACCCTAATGCCGCCGGTTAGGTTCTCCTG-CGATGCTTTGACGA
66 CCCGGCCCCCCAATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCC-GACGATGCTCCGACGA
* * *
1471976 TGGTGCCCCGGCAAAAAGAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCT-CAA
130 TGGTGCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CCTGCAA
1472040 CCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
194 -CCTC-GT-CGA--CGATC----AC---G-ATG-A-TCCA-ATGCTTAGACTGGGAATGAACTCC
*
1472105 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGA-GGGCAGGATGCG
243 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG
* * * * *
1472169 CAAGCCGAGGATCGATCGGGTTCCCCTCAGCATGCTACCGATCTTGCTGCCATAACCCTCGGTCT
308 CAAGCCGAGGATCGATCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCT
* * * *
1472234 GGTCCAATCTTAGACTGGGAATTAACTCTGTATGCCTAAGACAACCGACGAAACGAGCGGGCG-G
373 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAG
* * *
1472298 ACGGGCGGGCACTACGCC-AGCCAGAGATGCGGGATGCATAAGCCA-TGGATCGATAGGTTGGTA
438 -CGGGCGGGCACTACGCCGA-CCAGAGAGGCGGGATGCGTAAG-CAGTGGATCGATAGGGTGGTA
** * *
1472361 GGTGGGTTTAGGCACATCTTCATATTT-TAGCTTTTCCAATGCCGTATTTATGGCTTGTAAATTC
500 GGTGGGTTTAGGCACATCTTCATATTTCT-GCCATGCCAATGCCAT-TTTATGGCTTGTAAATTC
**
1472425 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATAACTCGTTTTCTATTTTTCA
563 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
1472490 CGATTTTTGAAACTTTCTACGGTTTGAGATTTTTTTAAATTCTTTCAGAAGGAGTTTTGGCCCAA
628 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* **
1472555 AACTTGGAAGACGCAATACTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
693 AACTTGGTAGACGTGATACTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
1472620 AGTGTATAGGTTTTTGTGACCATTTGAAAAAAGTG-CCTCATTTTAGACACTTTAATGGCTACTG
758 AGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTG
* *
1472684 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTGGAGGTTTGATG
823 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
1472745 AGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
** * *
1472809 CCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGT-CGGTCAGGTTCTTTGGCGATGCTCCGGCG
66 CCCGG-CCCCCCAATCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTCCGACGATGCTCCGACG
* * * * *
1472873 ATGTTGCCCCGGGCGAAAAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCA-CTCGT
129 ATGGTG-CCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCT-GC
**
1472937 AACCTTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
192 AACC-TC-GTC-GA--CGATC----AC---G-ATG-A-TC-CAATGCTTAGACTGGGAATGAACT
*
1473002 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGG-GCTCAGCCGGCTAGAGGGGCAGGAT
241 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GGCGCTCAGCCGGCCAGAGGGGCAGGAT
* * * * * * *
1473066 GCGCAAACC-AGGGATTGGTCGGGTCCCCCTCAGCGTGCTGCTGATCCTACTACCACAACCCTCA
305 GCGCAAGCCGA-GGATCGATCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
*
1473130 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----G
369 GTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * *
1473191 C-A---GGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCAGTGGATCGATAGGGTGGT
434 CGAGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGTAAGCAGTGGATCGATAGGGTGGT
* * * *
1473252 AGGTGGGTTTAGACACATCTTTATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTT
499 AGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTATGGCTTGTAAATTC
*
1473317 ATACAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
563 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * **
1473382 TGATTTTAGAAACTTTTTACGGTTCGGGATTTTTTCAAAATTTTTTTAGAAGGAGTTTTGGCATC
628 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT-TAAATTTTTTCAGAAGGAGTTTTGGCCCC
* *
1473447 AAACTTGGTTGACGTGATCCTTGTATTTTTG-GTGGCATGCACAAAAAAATTCAGCTAAAAACTC
692 AAACTTGGTAGACGTGATACTTGTATTTTTGTG-GGCATGCACAAAAAAATTCAGCTAAAAACTC
* * ** * *
1473511 AAAGTGTACAGGATTTCATTACCATTTGAAAAAAGTGTCGCCATT-TCAGACACTTTAATGGCTA
756 GAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCT-AGACACTTTAATGGCTA
* *
1473575 CTGGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
820 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
1473639 AGGGATAGGGAGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCATA--CC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * ** **
1473702 CCCAGCGCCCCCAATCGCCGGAACCCCAATGCCGT-CGGTCAGATTCTCTGGTGATGCTTAGACG
66 CCCGGC-CCCCCAATCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTCCGACGATGCTCCGACG
* * * * * *
1473766 ATGGTGGCCCGGGC-GAAAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCGCCCGTA
129 ATGGT-GCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTG-C
* * * *
1473830 AACCTCGGTCTGGTCTGATCTTA-GATTTTAAATGAACTCCGTATGCTTAGGCTGGGAACGAACT
192 AACCTC-GTC--GAC-GATC--ACG-------ATG-A-TCC-AATGCTTAGACTGGGAATGAACT
* * * * *
1473894 CCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGCCAGCCAGAGTGGTAGGATA
241 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATG
* * * * *
1473959 CGCAAGCC-AGGGATCGGTCGGGTCCCCTTCTA-CGTGTTGCCGATCCTGCTACCACAACCCTCA
306 CGCAAGCCGA-GGATCGATCGGGTCCCCCTC-AGCGTGCTGCCGATCCTGCTGCCACAACCCTCG
* * * * * *
1474022 ATCTGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACG-AA--AG-GAG
369 GTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * * * * * *
1474083 CGTGCGGGC--GCTC-A-GCC-AGCCAAAGTGGCAGGATACGCAAGCCAG-GGATCGGTCGGGTC
434 CGAGCGGGCGGGCACTACGCCGA-CCAGAGAGGCGGGATGCGTAAG-CAGTGGATCGATAGGGT-
** ** ** ** * *** ** * * *
1474142 CCCT-TCTACGTGTT--GCTGATCCTGC-TACCACAACCCT--CAATCTGGTCCAATCTTA--GA
496 -GGTAGGTGGGT-TTAGGCACAT-CTTCATATTTCTGCCATGCCAA--T-G-CC-ATTTTATGGC
** ** * ** * ** ***** * *
1474199 TTGGGAATAAACTCCATAT-G--CC-TAAGCCAACCGACGAAACGAGTGGGGCGGC-GGGCGGTC
553 TTGTAAATTCA-TACA-ATGGTCCCTTAAGCC-TTC-ATGTGA--AGTTTCATGGCAAGAC-G--
*** * ***** ** * * ** * * *
1474259 ACTACGTCGACCAGAGAGGCGGGA--TGTGCAAGCCGTGGATCGATA-GGGTGGTAGGTGGGTTT
609 ACT-CGTTTTCTA-TTTTTCACGATTTTTG-AA-AC-T---T-TTTACGGTTCG-AGAT---TTT
* ** * * *** ** * *
1474321 AGGCACATCTTCACATTTTCACCATGCCAATGCCATTTTTATGGCTTGTAAA-TTCATACA-AT-
661 -------T-TT-AAATTTT-TTCA-G--AA-G-GA-GTTT-TGGC-CCCAAACTTGGTAGACGTG
* *** ** * * ** * ** * * *
1474383 AGTCCCTTAAGCCCTCATGTGGAGCCTCATG-GCAAGACGACTC-G-T----TTTC-TA-TTTTT
708 A-T-ACTT--GTATTTTTGTGG-G---CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAT
* * ** ** *** * * * * * * **
1474439 CATGATTTT-TGA-AACTTT--TTACGGT-TCGGGATTTTTTTAAAAATTTTTCAGAAGGAGTTT
765 -AGGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCA---TTCTAGACA-CTTT-A-ATGG-CTAC
** * * * ***** * * * **
1474499 TGGCCCCAAACTTGGT-AGA-CGT--GAT-C-CTTGTATTTTTGT-TGCCA-TGCACAAAAAAAT
821 TGGCAGCAAACCT-GTAAAATC-TCAAATGCTCTT-TAAGGGGGTGTG--AGTTCTC---GAGGT
* * *
1474556 TCAGCTA
878 T-TGATG
*** * * ** ** * * * ** * *
1474563 AAAAATCGAAGTGTACAGGAT-TTTGTGACCATTCGAAAAGAGTGTC-CCCATTTCAGACACTTT
1 AGGGAT--AGGGGGCCA--ATATAAG-GGCCA--AG-TACCA--G-CACCCA--TC-G-CACATC
* * *** * *** ** * * ** *
1474626 A-ATG-GC-TA--CTAGCAGCAAACC--T-GT-AAAATCTCAAATGCTCTTTAAGGGGGTGA-GT
51 ATGTGCGCACACCCCCCCGGCCCCCCAATCGTCGGAA-CCCCAATGC-C--T---CCGGTCAGGT
* ** * * * * * * * * *
1474681 TCT-TGA-G--G-TTTGATGAGGGATAG--GGGGCCAATATAAAGGCCAAGTACCAGCACCCATC
109 TCTCCGACGATGCTCCGACGATGG-T-GCCCGGGCAAAAAAAAATG-C-GGCACCAGCA--CAT-
* ***** ** * * * *
1474739 GCACATCATGTGCGCACA-CCCCCCCGACCCCCCAATGCCGTCGGTC-AGGTTCTCCGGCAATGG
167 GC-C--C--GAGC-C-CAGCATGTGC-A-CCTGCAA--CC-TC-GTCGACGATC-AC-G--ATGA
*** ** * * * * * *
1474802 TGCCCCGGGCGAAAAACAATGCTGCACCA-GCACATGCC-CAAGCCTAGCATGTGC-A-CC-CGC
215 T--CCAATGC-TTAGAC--TG--GGA--ATGAAC-T-CCGTATGCCTA--A-GT-CAACCCACGA
*** * * * ** *** * * ** * *
1474862 AACCCTCGT-CTGGTCCGTTCTTAGACTGGGAATGA-ACTCTGTATGC-TTAGACTGGGAATGAA
265 AACGAGCGTGC-GG-GCG--CTCAG-CCGGCCA-GAGGGGCAGGATGCGCAAG-C--CG-A-GGA
** * * * * * * * * *
1474924 CTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCG-CCCAGTCGGCTA-GA----GGG
319 -T-CG-AT--C-GGGTC--CCC-C---TC-AGCGTGCTGCCGATCCTG-CTGCCACAACCCTCGG
* * * ** ** * * *
1474983 GCAGGATGCGTAAGCCGAGGATCGGTCGGG--T-CCCCCACAGTGTG-C--GGCCAATCCTG-CT
370 TCTGG-T-C-TAATCTTA-GA-C--T-GGGAATGAACTC-C-GTATGCCTAAGCCAA-CC-GAC-
** * **** ** * * *** * ** * * *
1475041 GCCAC-AACCTTTGTTCTGGTC-TG-A-T-CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
422 GAAACGAGCGGGCGAGC-GGGCGGGCACTACGCCGACCA-G-A-G-AGGCGGGATGCGTAAG-CA
* * * * * ** * * ** *
1475101 ATCGAT-GAAACGAGCG-GGTAGGCGGG--CAGGCATTGCGCCGGTCAGA-GAC-GCGGGATGCG
481 GTGGATCGATA-G-G-GTGGTAGGTGGGTTTAGGCA---CATC-TTCATATTTCTGC--CATGC-
* * *
1475160 CAA-GCCGTGGATCGATAGGGTGGTAGGTGGGTT-TAGGCACA-TC-TTCATAT-TTCTACCATG
536 CAATGCC----AT---T----T--TA--TGGCTTGTA---A-ATTCATACA-ATGGTC--CC-T-
* * * *** * * * **
1475220 CCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCTTTAAG-C-C-TTCATGTGAAGTT
577 -TAA-GCC---TTCATG---TG-AAGTT--T-C-ATGG--CAAGACGACTCGTT-TTCT-ATTTT
* **** **
1475282 TCATGGCA-GGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTT
625 TCA-CG-ATTTTTGAAAC---TT-----TTT-AC-------G------------GTTCGAGATTT
* ** * *
1475346 TTTAAAAATTTTTTCAGAAGGAGTTTTGGCATCAAACTTGGCT-GATGTGATCCTTGTATTTTT-
660 TTT-TAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG-TAGACGTGATACTTGTATTTTTG
* * * *
1475409 TGTGCCATCCATAAAAAAATTCAGCTAAAAACTC-ATAGTGTACAGGATTTTGTGACCATTTGAA
723 TG-GGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTATAGGATTTTGTGACCATTTGAA
* *
1475473 AAAGGTGTCCCCATTGC-AGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGC
786 AAAAGTGTCCCCATT-CTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
1475537 TCTTTAAGGGGGAGTGAGTTCTCAAGGTTTGATG
850 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
1475571 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * * *
1475635 CCTGGCCCCCCAATCGCCAGAACCCCAATGTCAT-CGGTCAGGTTCTCTGACAATGCTCCGGCGA
66 CCCGGCCCCCCAATCGTCGGAACCCCAATG-CCTCCGGTCAGGTTCTCCGACGATGCTCCGACGA
* * * ** *
1475699 TGGTGCCCCGG-ATGACAAAAAATGCGGCACCAGCACATGCCTGAGCTTAGCATGTGCACCCGCA
130 TGGTGCCCGGGCA--AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCA
* *
1475763 ACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
193 A-CCTCG-T-CGA-C-GATC----A---CG-ATG-A-TCC-AATGCTTAGACTGGGAATGAACTC
* * * * *
1475828 C-TATGCCTAAGTCAACCCATGAAACGAGCATGGGGGTGCTCAGCCAGCCAGAGGGGCAGGATGC
242 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * ** * * * * * * * *
1475892 ACATGATGGGGATCGGTCAGGTCCCCCTCAGCATGCTGCCAATCCTGCTACCGCAACCCTCTGTC
307 GCAAGCCGAGGATCGATCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGT-
* * * *
1475957 CAT-TTC-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGC
371 C-TGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * ** * *
1476020 G-GACGGGCGGGCACTACACTGGCCATTGATGC-GGATGCGTAAGCCA-TGGATCGATAAGGTGG
435 GAG-CGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGTAAG-CAGTGGATCGATAGGGTGG
1476082 TAGGTGGGTTTAGG--CA----C--A----T--C-T-----T--C-----A-------T--ATTC
498 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTATGGCTTGTAAATTC
* * * *
1476111 ATACAATGGTCCCTTAGGCCTTCATGTGAAGTTTCATGGAAAGATGACTCGTTTTCTATTGTTCA
563 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
1476176 CAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTTAAATTTTTTTAGAAGGGGTTTTGGCCCC
628 CGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCC
* * * * * *
1476241 AATCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAAATCG
692 AAACTTGGTAGACGTGATACTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * * * *
1476306 ATGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGACCCCTTTTTAGACACTTTAATGGTTACT
757 AAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACT
* *
1476371 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTATCGAGGTTTGATG
822 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
1476433 AGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * *
1476498 CCC-GCCCGCCAATCATTGGAACCCTAATGCCGCTGGTCAGGTTCT-C--CGA---T-----GAT
66 CCCGGCCCCCCAATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * ** *
1476551 GGTGCCCCGGGC-GAAAAAAATGCAGCACCAGCACATGCTAGAGCCCACCATGTGCACCTGCAAC
131 GGTG-CCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAA-
*
1476615 CCTCGATTCGATCCGATCTTAGACTAGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCG
194 CCTCG--TCGA--CGATC----AC---G-ATG-A-TCCA-ATGCTTAGACTGGGAATGAACTCCG
* * * *
1476680 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTAAGCCAGCCAGAGGGGCAGGATACGC
244 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGC
* * * * * * * * * ** ** *
1476745 AAGCCGGGGATTGGTCGGGTTCCCCTTAGCGTGCTACTGATCTTGTTGCTGCAACCCTCTATTTG
309 AAGCCGAGGATCGATCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTG
** * * * *
1476810 GT-TCGGTCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACGGACGAAACGA----GCGAA
374 GTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAG
* * * *
1476870 CGGGCGAGCACTACGCCGGCCAGAGAGGCGTGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGT
438 CGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGTAAGCAGTGGATCGATAGGGTGGTAGGT
* * * * ** * *
1476935 GGGTTTTGGCTCTTCTTCATATTTTTGCTGTGCCAATACCATTTTTATGGCTTATAAATTCATAC
503 GGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATAC
* * * * * *
1477000 ATTGGTCTCTTAAGCCTTCATGTGAACTTTGATGGCAAGATGACTCGTTTTCTATTTTTCATGAT
567 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
1477065 TTTTGAAACTTTTTATGGTAC-AGGATTTTTTTAAAATTTCTTCAGAAGGTGTTTTGGCCCCAAA
632 TTTTGAAACTTTTTACGGTTCGA-GATTTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * * * *
1477129 CTTGGTAGACATGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCAAAG
695 CTTGGTAGACGTGATACTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
1477194 TGTATAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATT-TCAGACACTTTAACGGCTACTGG
760 TGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCT-AGACACTTTAATGGCTACTGG
* *
1477258 CAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTTCTTGAGGTTTGATG
824 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
1477318 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * ** * *
1477382 ACTGGCCCCCCAATCGTCGGAACCCCAATGCCACCGGTCAGGTTTTTTGATGATGCTCCAACGAT
66 CCCGGCCCCCCAATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* ** * * * **
1477447 GGTGCCTCAGGTGAAAAAAATTGTGGCACCAGCACCTGCCCGAGCCCAGCATGTGCACCCACAAC
131 GGTGCC-CGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAAC
**
1477512 C-C-TCG--G-TC-CG--G-TCTGAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
195 CTCGTCGACGATCACGATGATCCAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * ** * * *
1477567 CATGAAATGAGCGTACGGGTGCTCAGCCAGCCAAAGTTGCAGGATACGCAAGTCGGGGATCGATC
260 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGATC
* * * * *
1477632 GAGTCCCCCTCAGCGTGCTACTGATCCTGCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTG
325 GGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTAATCTTAGACTG
* * *
1477697 GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGG-TAGGTGGGCGGGCACTACGC
390 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA-GCGGGCGGGCACTACGC
* * * * *
1477761 TGACTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATCT
454 CGACCAGAGAGGCGGGATGCGTAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* ***
1477826 TCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAAAT
519 TCATATTTCTGCCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
1477891 TTCATGTGAAGTTTCATGGCAAGACGACGCATTTTCTATTTTTCATGATTTTTGAAACCTTTTAC
583 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * ** * * *
1477956 GATTCGGGATTTTTTT-AATTTTTTTTGAGATGACGTTTTGGCCCCAAACTTGGTAGACGTAATC
648 GGTTCGAGATTTTTTTAAATTTTTTCAGA-AGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATA
* * * * *
1478020 CTTGTATTTTTTTGGGCATGCATAAAAAAATTCAGCTAAAAACTTGAATTGTACAGGATTTTGTG
711 CTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTG
* *
1478085 ACCATTTGAAAAACGTGTCCCCATT-TCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAA
776 ACCATTTGAAAAAAGTGTCCCCATTCT-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
1478149 TATCAAATGCTCTTTAAGGGGGTGTTAGTTCTCGAGGTTTGATG
840 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * **
1478193 AGGGATAGGGGGCCAATACAAGGACCAAGTACTAGCACCCATCGCACATCACATGCGCACACCCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * * * * **
1478258 CCAGCCCCCCCAATCGTCGGAACCCCAATACCGCTGGTCAGGTACTCTGGCGATGCTCCTGGTGA
66 CCCGGCCCCCCAATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGCTCC-GACGA
** * * * * * **
1478323 TGGTGGCCCGGGTGAAAAAAAATACGGCACCAGCACATGCTCAAGCCCAGCCTATGCACCCACAA
130 TGGT-GCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAA
* *
1478388 CC-C-TCG--G-T--C--TGATCCGAT-CTTAGACTGGGAATGAACTCCGTATACCTAAGTCAAC
194 CCTCGTCGACGATCACGATGATCCAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* *
1478443 CCACGAAATGA--GT------G-T-------------------G-TG-G--A-TC-A-G--C--T
259 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGAT
* * * ** * * * * *
1478469 -GGGTCCCCCTTAGCGTGCTGCCGATCTTGGTGCCGTAACCCTCAGTCCGGACCAATCTTAGACG
324 CGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTAATCTTAGACT
* * *
1478533 GGGAATGAACTCCGTATGCCTAA-CCAACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTACGT
389 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGC
* * *
1478597 CGGCCAGAGAGGCGGGATGCGCAAGCCAGTGGATCGATTGGGTGGTAGGTGGG-TTAGGCACATC
454 CGACCAGAGAGGCGGGATGCGTAAG-CAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
1478661 TTCATATCTT-TGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
518 TTCATAT-TTCTGCCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
1478725 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
581 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* ** *
1478790 ACGGTTTGAGATTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
646 ACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATA
* * * *
1478855 CTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTG
711 CTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTG
* *
1478920 ACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAAT
776 ACCATTTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
1478985 ATCCAAATGCCTTCTTTAA-GAGGTGTTAGTTCTCGAGGTTTGATG
841 CT-CAAATG-C-TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
** * * *
1479030 AGGGATAGGGGGCCAATATAA-GGCCAA-TACCAGCACCCATCTTACATCATTTACGCACA-GCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* *
1479092 CCAGGCACCCCCCAATTC-ACGGAA--CCAATGCCGT-CGGTCAGGTTCTCC-ACGATGCT-C-A
66 CCCGG--CCCCCCAA-TCGTCGGAACCCCAATGCC-TCCGGTCAGGTTCTCCGACGATGCTCCGA
* * * * * * *
1479150 TGGAT-GTGCCCCGGCAAAAAAAAA-GTGACACCAGTACATGCCTGAACCCAGCATGTGCACC--
127 -CGATGGTGCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTG
* *
1479211 CATACCTC-T---C--T---G--G-TCCGAT-C-TAGA-TGGGAATGAACTCCGTTATCCTGGCT
191 CA-ACCTCGTCGACGATCACGATGATCCAATGCTTAGACTGGGAATGAACTCCG-TA---TGCCT
* * * * * * *
1479261 GGAA-TGAACTTCATCCAGTCAACCTG-GCGT-AGGGTGCT-A-CC-GCC-----GG-AGCACGC
251 --AAGTCAAC-CCA--C-G--AAAC-GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * *
1479314 ACAAGCCG-GGATCGATC-GGTCCCCCTCAGTG-GCTGTCGATCTACT-CTG--TCAACCCT-GG
307 GCAAGCCGAGGATCGATCGGGTCCCCCTCAGCGTGCTGCCGATC--CTGCTGCCACAACCCTCGG
** * * * ** * *
1479372 TCTGACCCAATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATAAGTGGGT
370 TCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * ** * ** *
1479437 GGGCGGGTAGGTAGGCACTATACCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGT
435 GAGCGGG--CG--GGCACTACGCCGACCAGAGAGGCGGGATGCGTAAGCAGTGGATCGATAGGGT
* * * *
1479502 GGTAGGTGGGTTTAGGCACATCTTCTTATATCTGGCACGCCAATGCCATTTTTATGGCTTGTAAA
496 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-TTTTATGGCTTGTAAA
* * *
1479567 TTCATACAATGGTCCCTTAAGCCTGCATGTGAAGTTTCTTGGCAAGATGACTCGTTTTCTATTTT
560 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * * *
1479632 TCATGATTTTTGAGATTTTTTACGATTTGAGATTTTTTTAAAATTATCTCAGAAGGAGTTTTGGC
625 TCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTT-AAATTTTTTCAGAAGGAGTTTTGGC
** * * *
1479697 CCCAAACTTCATTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAA
689 CCCAAACTT-GGTAGACGTGATACTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAA
* * * *
1479762 CTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCAATT-TCAAACACTTTAATGG
753 CTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCT-AGACACTTTAATGG
* *
1479826 CTCCTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
817 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
1479891 TG
882 TG
* *
1479893 AGGGATAGCGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
*
1479958 CCC-GCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA---T--G--G-T
66 CCCGGCCCCCCAATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
* * *
1480014 -G-CCCCGAGAG-AAAAAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCACCCT-CA
131 GGTGCCCG-G-GCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CCTGCA
* * *
1480075 ACTCTCGGTCTGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
193 AC-CTC-GTC--GAC-GA---T-CAC---G-ATG-A-TCC-AATGCTTAGACTGGGAATGAACTC
* *
1480140 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA-GGGCCGGATAG
242 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT-G
* * * * * **
1480204 -GTAAGCCGGGGATCGATCGGGTCCTCCTCTA-CGAGCTGCCGATCCTACTGCTGCAACCCTCGG
306 CGCAAGCCGAGGATCGATCGGGTCCCCCTC-AGCGTGCTGCCGATCCTGCTGCCACAACCCTCGG
* *
1480267 T-TCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-G
370 TCT-GGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
** * * * *
1480329 GCG-GCGGGCGGGCACTACATCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
433 GCGAGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGTAAGCAGTGGATCGATAGGGTGG
* *
1480393 TAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGA-GCCAATGCCATTTTTATGCCTTGTAAAT
498 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCC-ATGCCAATGCCA-TTTTATGGCTTGTAAAT
*
1480457 TCATACAATGGTCCCTTATGCCTT
561 TCATACAATGGTCCCTTAAGCCTT
1480481 GTAAGATTCA
Statistics
Matches: 8174, Mismatches: 1496, Indels: 1443
0.74 0.13 0.13
Matches are distributed among these distances:
822 15 0.00
823 6 0.00
824 7 0.00
825 1 0.00
826 6 0.00
827 7 0.00
828 33 0.00
829 14 0.00
830 3 0.00
831 4 0.00
832 1 0.00
833 9 0.00
834 25 0.00
835 179 0.02
836 228 0.03
837 158 0.02
838 8 0.00
840 2 0.00
841 1 0.00
842 1 0.00
844 2 0.00
845 1 0.00
847 28 0.00
848 39 0.00
849 2 0.00
850 96 0.01
851 159 0.02
852 6 0.00
854 1 0.00
855 1 0.00
856 3 0.00
857 1 0.00
858 41 0.01
859 46 0.01
860 40 0.00
861 22 0.00
862 328 0.04
863 246 0.03
864 46 0.01
865 182 0.02
866 8 0.00
868 2 0.00
869 2 0.00
870 1 0.00
871 177 0.02
872 52 0.01
873 66 0.01
874 16 0.00
875 697 0.09
876 451 0.06
877 393 0.05
878 476 0.06
879 5 0.00
880 1 0.00
881 11 0.00
882 13 0.00
883 3 0.00
884 16 0.00
885 381 0.05
886 5 0.00
887 10 0.00
888 10 0.00
889 135 0.02
890 25 0.00
891 36 0.00
892 531 0.06
893 224 0.03
894 173 0.02
895 56 0.01
896 34 0.00
897 339 0.04
898 268 0.03
899 310 0.04
900 179 0.02
901 8 0.00
902 108 0.01
903 8 0.00
904 1 0.00
906 4 0.00
907 3 0.00
908 4 0.00
909 5 0.00
913 2 0.00
914 7 0.00
915 1 0.00
916 5 0.00
917 3 0.00
918 3 0.00
919 18 0.00
920 20 0.00
921 13 0.00
922 16 0.00
923 20 0.00
924 12 0.00
925 3 0.00
926 5 0.00
927 9 0.00
928 9 0.00
929 6 0.00
930 23 0.00
931 8 0.00
932 8 0.00
933 8 0.00
934 13 0.00
935 11 0.00
936 10 0.00
937 13 0.00
938 1 0.00
939 3 0.00
940 3 0.00
941 8 0.00
942 8 0.00
943 12 0.00
944 13 0.00
945 11 0.00
946 4 0.00
947 7 0.00
948 8 0.00
949 2 0.00
952 3 0.00
953 2 0.00
954 2 0.00
955 2 0.00
957 1 0.00
958 3 0.00
960 7 0.00
961 1 0.00
962 2 0.00
963 14 0.00
964 18 0.00
965 39 0.00
966 15 0.00
967 28 0.00
968 17 0.00
969 7 0.00
970 9 0.00
971 4 0.00
972 6 0.00
973 2 0.00
974 19 0.00
975 6 0.00
976 5 0.00
977 6 0.00
978 4 0.00
979 3 0.00
980 2 0.00
981 3 0.00
982 1 0.00
983 2 0.00
984 9 0.00
985 6 0.00
986 4 0.00
987 5 0.00
988 13 0.00
989 11 0.00
990 9 0.00
991 5 0.00
992 16 0.00
993 3 0.00
994 3 0.00
995 6 0.00
996 17 0.00
997 13 0.00
998 8 0.00
999 13 0.00
1000 4 0.00
1001 16 0.00
1002 19 0.00
1003 10 0.00
1004 12 0.00
1005 13 0.00
1006 11 0.00
1007 6 0.00
1008 15 0.00
1009 23 0.00
1010 18 0.00
1011 12 0.00
1012 20 0.00
1013 19 0.00
1014 3 0.00
1015 4 0.00
1016 4 0.00
1017 2 0.00
1018 8 0.00
1019 1 0.00
1024 19 0.00
1025 17 0.00
1026 23 0.00
1027 13 0.00
1028 10 0.00
1029 4 0.00
1030 135 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (883 bp):
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCGGCCCCCCAATCGTCGGAACCCCAATGCCTCCGGTCAGGTTCTCCGACGATGCTCCGACGAT
GGTGCCCGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAACC
TCGTCGACGATCACGATGATCCAATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGATCG
GGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTCTAATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCG
ACCAGAGAGGCGGGATGCGTAAGCAGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTGCCATGCCAATGCCATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
TCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATACTTGT
ATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
Found at i:1472094 original size:26 final size:26
Alignment explanation
Indices: 1472058--1472110 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1472048 CCGATCCGAT
1472058 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1472084 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1472110 C
1 C
1472111 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1472986 original size:26 final size:26
Alignment explanation
Indices: 1472957--1473009 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1472947 CTGATCCGAT
*
1472957 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1472983 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1473009 C
1 C
1473010 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1473033 original size:899 final size:896
Alignment explanation
Indices: 1469195--1474084 Score: 5933
Period size: 878 Copynumber: 5.5 Consensus size: 896
1469185 ACGTTATGAC
* *
1469195 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCGTGTGCGCACACCCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* ** * * * ** ** **
1469260 CC-GACCCCCCAATCACCAGAACCCTAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGGTGAT
66 CCGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTTAGACGAT
* * * * * *
1469324 GGTGCCCCGGGTGAAAAAAAATAG-GGCACCAGTACATGCTCGAGCCCAGCATGCGCACC-CACA
131 GGTGCCCCGGGCGAAAAAAAAT-GCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCGTA-A
* * *
1469387 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACT-GGAATGAACTC
194 A-CCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
*
1469451 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGC
258 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * * * * * *
1469516 GCAAGCCGAGGGATCGATCGGGTCCCCCTCAGCGTGCTGCTGATCTTGCTGCCATAACCCTCGGT
323 GCAAGCC-AGGGATCGGTCGGGTCCCCCTCAGCATGCTGCCGATCCTACTACCACAACCCTCAGT
* * * * * *
1469581 CTTGTCCAATCTTAGACTGGGAATTAACTCCGGATTCCTAAGACAACCGACGAAATGAGCGGGCG
387 CTGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-
* * * * * * *
1469646 GGCGGGCAGGCACTACGCCAGCGAGAGAGGCAGGATGCGTAA-ACAGTGGATCGATAGGTTGGTA
451 -GAGGGCGGGCACTACGCC-GCCAGAGAGGCGGGATGCGCAAGCCA-TGGATCGATAGGGTGGTA
* ** * ** *
1469710 GGTGGGTTTAGGCACATCTTCATATTTC-ATCTTTTCCAATGCTGTATTTATGGCTTGTAAATTC
513 GGTGGGTTTAGGCACATCTTCATATTTCTAGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
1469774 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCA
578 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* *
1469839 CGATTTTTGAAACTTTTTATGGTTCAAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCAA
643 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCC-A
* * * * * *
1469904 AAGTTGGTAGATGCGATACTTGTATATTTTGTGGGCATGCACAAAAAAATTTAGCTAAAAACTTG
707 AACTTGGTAGACGTGATCCTTGTAT-TTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * **
1469969 AAGTGTATA-CATTTTTGTGACCATTTGAAAAAAGTGCCCCATTCCAGACACTTTAATGGCTACT
771 AAGTGTATAGGA-TTTTGTGACCATTTGAAAAAAGTGTCCCATTTTAGACACTTTAATGGCTACT
* * *
1470033 AGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
835 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
1470095 AGGGATAGTGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * **
1470160 CTCGGCCCCCCCAATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACAATGCTCCGACGA
66 C-CGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTTAGACGA
* * * * ** **
1470225 TGGCGCCCCGGGTGAAAAAAAATACGGCACCAGCACATGCTTGAGCATAGCATGTGCACCTGT-A
130 TGGTGCCCCGGGCGAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACC-GTAA
1470289 ACC-C--TC-G----G-TC-----C---G---G---TCCG-AT-CTTAGACTGGGAATGAACTCC
194 ACCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * *
1470329 GTATGCCTAAGTCAACCCATGAAACGTGCGTGCGGGCGCTCAGCCGGCCAGAGTGGCAGGATGCG
259 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG
* * ** * ** * * * *
1470394 CAAGTCGGGGATCGACCAGGTCCCCCTCAGTGTGCTACCGATCCTGCTACCACAACACTCAGTTT
324 CAAGCCAGGGATCGGTCGGGTCCCCCTCAGCATGCTGCCGATCCTACTACCACAACCCTCAGTCT
*** * * *
1470459 GGTTTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAGCGGGCGAG
389 GGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA-
* * * ** *
1470524 CGGGAGGGCACTACGTCGGCCAGAGAGGCGGGATGCGTAAGCTGTGGATCGATAGGGTAGTAGGT
453 -GGGCGGGCACTACG-CCGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
*
1470589 GGGTTTAGGCACATCTTCATATTTCT-GCCATGCCAATGCCATTTTCATGGCTTGTAAATTCATA
516 GGGTTTAGGCACATCTTCATATTTCTAGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
1470653 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
581 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
** * * * *
1470718 TTTTCAAAACTTTTTGCAGTTTGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
646 TTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTTAAATTTTTTCAGAAGGAGTTTTGG-CCCAAA
* *** *
1470783 CTTGGTAGACGTGAT-CTTCGTATTTTTTTTCACATGCACAAAAAAATTCAGCTAAAAACTCAAA
709 CTTGGTAGACGTGATCCTT-GTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
1470847 GTGTACAGGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTCTAGACACTTTAATGGCTACTGG
773 GTGTATAGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTTAGACACTTTAATGGCTACTGG
* * * * * *
1470912 CTGCAAACTTGTAAAATCTCAAATGGTCCTTAAAGGGGTGTGAGTTCTCGAGGTTTGATA
837 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * * * * * *
1470972 AGGGAAAGAGGGTCAATTTAAGGGCCAAATACCAGCACCAATCGTAAATCATGTGCGCACACCCT
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-
* ** * ** ** *
1471037 CCCCGGCCTCCCCAATCGTCGGAACCCCAATGCC-TCCAATCAGGTTCTCCGATGATGCTCCGGC
64 CCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGT-CGGTCAGGTTCTCTGGCGATGCTTAGAC
* ** * *
1471101 AATGGTGCCCTAGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC-TG
128 GATGGTGCCCCGGGCGAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCGT-
* * *
1471165 CAACC-C--TC--A---G-TC-----C-----A-G---TTC-AAT-CTTAGACTGGGAATGAACT
192 AAACCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
1471205 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATG
257 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATG
* ** * *
1471270 CGCAAGCC-GAGGATTGGTCGGGTCCCCCTCAGCATGCTGCCGATCCTACTGTCGCAACCCTCGG
322 CGCAAGCCAG-GGATCGGTCGGGTCCCCCTCAGCATGCTGCCGATCCTACTACCACAACCCTCAG
* * * * * *
1471334 T-TCAGTCTAAACTTAGACTAGGAATAAACTCCGTACGCCTAAGCCAACCGATGAAACGAGCGGG
386 TCT-GGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * **
1471398 CGAGTGGGCGGGCACTATGCCGACCAGAGAGGCAGGATGCGCAAGCGGTGGATCGATAGGGTGGT
450 CGA--GGGCGGGCACTACGCCG-CCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGT
*
1471463 AGGTGGGTTTAGGCACATCTTCATATTTCT-GCCATGCCAATGCCATTTTTTTGGCTTGTAAATT
512 AGGTGGGTTTAGGCACATCTTCATATTTCTAGCCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
1471527 CATCCAATGGTCCCTGAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT-T-TTTTTC
577 CATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * * *
1471590 ACGCTTTTTGAAACTTTTTACGGTTCCAGATTTTTTTAACTTTTTTCAGAAGGGGTTTCAGCCCC
642 ACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTT-TGGCCC
* * *
1471655 AAACTTGGTAGACGTGATCCTTGTATTTTTTTGGGCATGCACATAAAAATTTAGCTAAAAACTCG
706 AAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
1471720 AAGTGCATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTCAGACACTTTAATGGCTACT
771 AAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTT-AGACACTTTAATGGCTACT
* * * *
1471785 GGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGAGGTGTGAGTTCTCAAGGTTTGATG
835 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
1471847 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACATCATGTGCGCACACCCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* ** * * * * * *
1471912 CCGGGCCCATCAATCATCAGAACCCTAATGCCGCCGGTTAGGTTCTCCT-GCGATGCTTTGACGA
66 CCGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-CTGGCGATGCTTAGACGA
* * *
1471976 TGGTGCCCC-GGC-AAAAAGAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCTCA
130 TGGTGCCCCGGGCGAAAAA-AAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCGT-A
* * *
1472039 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
193 AACCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
*
1472104 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGA-GGGCAGGATGC
258 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * * * * * *
1472168 GCAAGCC-GAGGATCGATCGGGTTCCCCTCAGCATGCTACCGATCTTGCTGCCATAACCCTCGGT
323 GCAAGCCAG-GGATCGGTCGGGTCCCCCTCAGCATGCTGCCGATCCTACTACCACAACCCTCAGT
* * *
1472232 CTGGTCCAATCTTAGACTGGGAATTAACTCTGTATGCCTAAGACAACCGACGAAACGAGCGGGCG
387 CTGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-
* ** *
1472297 GACGGGCGGGCACTACGCCAGCCAGAGATGCGGGATGCATAAGCCATGGATCGATAGGTTGGTAG
451 GA-GGGCGGGCACTACGCC-GCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
** * * *
1472362 GTGGGTTTAGGCACATCTTCATATTT-TAGCTTTTCCAATGCCGTATTTATGGCTTGTAAATTCA
514 GTGGGTTTAGGCACATCTTCATATTTCTAGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
**
1472426 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATAACTCGTTTTCTATTTTTCAC
579 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
1472491 GATTTTTGAAACTTTCTACGGTTTGAGATTTTTTTAAATTCTTTCAGAAGGAGTTTTGGCCCAAA
644 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCC-AA
* ** *
1472556 ACTTGGAAGACGCAATACTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
708 ACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
1472621 GTGTATAGGTTTTTGTGACCATTTGAAAAAAGTG-CCTCATTTTAGACACTTTAATGGCTACTGG
773 GTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCC-CATTTTAGACACTTTAATGGCTACTGG
* *
1472685 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAGGGGGGTGTGAGTTCTGGAGGTTTGATG
837 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
1472745 AGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* ** *
1472810 CCGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTTGGCGATGCTCCGGCGAT
66 CCGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTTAGACGAT
* *
1472875 GTTGCCCCGGGCGAAAAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCACTCGT-AA
131 GGTGCCCCGGGCGAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCAC-CGTAAA
* *
1472939 CCTTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
195 CC-TCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
*
1473004 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGG-GCTCAGCCGGCTAGAGGGGCAGGATGC
259 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCG-GGCGCTCAGCCGGCCAGAGGGGCAGGATGC
* * * *
1473068 GCAAACCAGGGATTGGTCGGGTCCCCCTCAGCGTGCTGCTGATCCTACTACCACAACCCTCAGTC
323 GCAAGCCAGGGATCGGTCGGGTCCCCCTCAGCATGCTGCCGATCCTACTACCACAACCCTCAGTC
** *
1473133 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC-A
388 TGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA
*
1473193 -GGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAG-CAGTGGATCGATAGGGTGGTAGGT
453 GGGCGGGCACTACG-CCGCCAGAGAGGCGGGATGCGCAAGCCA-TGGATCGATAGGGTGGTAGGT
* * *
1473256 GGGTTTAGACACATCTTTATATTTCTA-CCATGCCAATGCCATTTTTATGGCTTGTAAATTTATA
516 GGGTTTAGGCACATCTTCATATTTCTAGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
1473320 CAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
581 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * *
1473385 TTTTAGAAACTTTTTACGGTTCGGGATTTTTTCAAAATTTTTTTAGAAGGAGTTTTGGCATCAAA
646 TTTTTGAAACTTTTTACGGTTCGAGATTTTTT-TAAATTTTTTCAGAAGGAGTTTTGGC-CCAAA
* *
1473450 CTTGGTTGACGTGATCCTTGTATTTTTG-GTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAA
709 CTTGGTAGACGTGATCCTTGTATTTTTGTG-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* ** * *
1473514 GTGTACAGGATTTCATTACCATTTGAAAAAAGTGTCGCCATTTCAGACACTTTAATGGCTACTGG
773 GTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTC-CCATTTTAGACACTTTAATGGCTACTGG
* *
1473579 CAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
837 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
1473639 AGGGATAGGGAGCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCATA-CCC
1 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * *
1473703 CCAGCGCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCAGATTCTCTGGTGATGCTTAGACGAT
66 CCGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTTAGACGAT
* * *
1473768 GGTGGCCCGGGCG-AAAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGCGCCCGTAAA
131 GGTGCCCCGGGCGAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGC-ACCGTAAA
* * * *** * *
1473832 CCTCGGTCTGGTCTGATCTTAGATTTTAAATGAACTCCGTATGCTTAGGCTGGGAACGAACTCCG
195 CCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
1473897 TATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGCCAGCCAGAGTGGTAGGATACGC
260 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGC
* * * * *
1473962 AAGCCAGGGATCGGTCGGGTCCCCTTCTA-CGTGTTGCCGATCCTGCTACCACAACCCTCAATCT
325 AAGCCAGGGATCGGTCGGGTCCCCCTC-AGCATGCTGCCGATCCTACTACCACAACCCTCAGTCT
* * *
1474026 GGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCG
389 GGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
1474085 TGCGGGCGCT
Statistics
Matches: 3475, Mismatches: 425, Indels: 185
0.85 0.10 0.05
Matches are distributed among these distances:
871 5 0.00
872 43 0.01
873 57 0.02
874 11 0.00
875 244 0.07
876 397 0.11
877 270 0.08
878 479 0.14
879 3 0.00
881 2 0.00
882 2 0.00
884 1 0.00
887 2 0.00
891 4 0.00
892 456 0.13
893 192 0.06
894 143 0.04
895 1 0.00
896 5 0.00
897 281 0.08
898 284 0.08
899 299 0.09
900 186 0.05
901 4 0.00
902 104 0.03
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTTAGACGAT
GGTGCCCCGGGCGAAAAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCGTAAAC
CTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
AGCCAGGGATCGGTCGGGTCCCCCTCAGCATGCTGCCGATCCTACTACCACAACCCTCAGTCTGG
TCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGGG
CGGGCACTACGCCGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTAGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAG
GATTTTGTGACCATTTGAAAAAAGTGTCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
Done.