Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 15 of 93
Found at i:1474164 original size:159 final size:159
Alignment explanation
Indices: 1473875--1474237 Score: 636
Period size: 159 Copynumber: 2.3 Consensus size: 159
1473865 ACTCCGTATG
* **
1473875 CTTAGGCTGGGAACGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGC
* *
1473940 CAGCCAGAGTGGTAGGATACGCAAGCCAGGGATCGGTCGGGTCCCCTTCTACGTGTTGCCGATCC
66 CAGCCAAAGTGGCAGGATACGCAAGCCAGGGATCGGTCGGGTCCCCTTCTACGTGTTGCCGATCC
1474005 TGCTACCACAACCCTCAATCTGGTCCAAT
131 TGCTACCACAACCCTCAATCTGGTCCAAT
1474034 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGC
*
1474099 CAGCCAAAGTGGCAGGATACGCAAGCCAGGGATCGGTCGGGTCCCCTTCTACGTGTTGCTGATCC
66 CAGCCAAAGTGGCAGGATACGCAAGCCAGGGATCGGTCGGGTCCCCTTCTACGTGTTGCCGATCC
1474164 TGCTACCACAACCCTCAATCTGGTCCAAT
131 TGCTACCACAACCCTCAATCTGGTCCAAT
* * * *
1474193 CTTAGATTGGGAATAAACTCCATATGCCTAAGCCAACCGACGAAA
1 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAA
1474238 CGAGTGGGGC
Statistics
Matches: 194, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
159 194 1.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGC
CAGCCAAAGTGGCAGGATACGCAAGCCAGGGATCGGTCGGGTCCCCTTCTACGTGTTGCCGATCC
TGCTACCACAACCCTCAATCTGGTCCAAT
Found at i:1474910 original size:26 final size:26
Alignment explanation
Indices: 1474881--1474933 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1474871 CTGGTCCGTT
*
1474881 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1474907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1474933 C
1 C
1474934 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1475811 original size:26 final size:25
Alignment explanation
Indices: 1475782--1475833 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
1475772 CCGATCTGAT
*
1475782 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCC-TATG
1475808 CTTAGACTGGGAATGAACTCCTATG
1 CTTAGACTGGGAATGAACTCCTATG
1475833 C
1 C
1475834 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCCTATG
Found at i:1476683 original size:26 final size:26
Alignment explanation
Indices: 1476632--1476684 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1476622 TCGATCCGAT
*
1476632 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
1476658 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
1476684 C
1 C
1476685 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:1478057 original size:875 final size:857
Alignment explanation
Indices: 1474032--1480480 Score: 5990
Period size: 873 Copynumber: 7.4 Consensus size: 857
1474022 ATCTGGTCCA
* * * *
1474032 ATCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCT-A
* * * * *
1474097 GCCAGCCAAAGTGGCAGGATACGCAAGCCAGGGATCGGTCGGGTCCCCTTCTA-CGTGTTGCTGA
65 GCC-GCC-AAG-GGCAGGATACGCAAG-CGGGGATCGATC-GGTCCCCCTC-AGCGTGCTACTGA
* ** ** * * * *
1474161 TCCTGCTACCACAACCCTCAATCTGGTCCAATCTTAGATTGGGAATAAACTCCATATGCCTAAGC
124 TCCTGCTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
1474226 CAACCGACGAAACGAGTGGGGCGGCGGGCGGTCACTACG-TCGACCAGAGAGGCGGGATGTGCAA
189 CAACCGATGAAACGAG-CGGGAGGCGGGCGGGCACTACGCT-GGCCAGAGAGGCGGGATGCGCAA
* *
1474290 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTT-TCACCATGCCAATGC
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCCATGCCAATGC
* * * **
1474354 CATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCCTCATGTGGAGCCTCATGGCAAG
316 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* * *
1474419 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAAATT
381 ATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTT
*
1474484 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCATGCACA
446 TTTCAGAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACA
* * *
1474549 AAAAAATTCAGCTAAAAAATCGAAGTGTACAGGATTTTGTGACCATTCGAAAAGAGTGTCCCCAT
509 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
1474614 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGG-GT
574 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
1474677 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCA
639 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
1474742 CATCATGTGCGCACA----C---CCCCCCGA-C--C----CCCCAATGCCGTCGGTCA-GGT--T
704 CATCATGTGCGCACACCCCCAGGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGGTGAT
* * * * * * * *
1474790 -CTCCGGCAATGGTGCCCCGGGCGAAAAACAATGCTGCACCAGCACATGCCCAAGCCTAGCATGT
769 GCTCCGACGATGGTG-CCCAGG-GAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
*
1474854 GCACCCGCAACCCTCGTCTGGTCCGTTCTTAGACTGGGAATGAACTCTG
832 GCACCCACAA-CC-C-TC--G---G-TC-----C---G---G---TCTG
** * *
1474903 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCC
1 -AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTG-C
* * * * * * * * * ** **
1474968 CAGTCGGCTAGAGGGGCAGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCACAGTGTGCGGCCA
63 TAG-CCGCCA-A-GGGCAGGATACGCAAG-CGGGGATCGATC-GGTCCCCCTCAGCGTGCTACTG
** * * * * *
1475033 ATCCTGCTGCCACAACCTTTGTTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
123 ATCCTGCTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
1475098 CCAATCGATGAAACGAGCGGGTAGGCGGGCAGGCATTGCGCCGGTCAGAGACGCGGGATGCGCAA
188 CCAACCGATGAAACGAGCGGG-AGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAA
*
1475163 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCC
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
* * *
1475228 ATTTTTATGTCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAGGA
317 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * * *
1475293 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAAATTTT
382 TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
** * * * *
1475358 TTCAGAAGGAGTTTTGGCATCAAACTTGGCT-GATGTGATCCTTGTATTTTTTGTGCCATCCATA
447 TTCAGAA-GAGTTTTGGCCCCAAACTTGG-TAGACGTGATCCTTGTATTTTTT-TGGCATGCACA
*
1475422 AAAAAATTCAGCTAAAAACTC-ATAGTGTACAGGATTTTGTGACCATTTGAAAAAGGTGTCCCCA
509 AAAAAATTCAGCTAAAAACTCGA-AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
1475486 TTGCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGAG
573 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
1475551 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
638 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * **
1475616 ACATCATGTGCGCACACCCCCTGGCCCCCCAATCGCCAGAACCCCAATGTCATCGGTCAGGTTCT
703 ACATCATGTGCGCACACCCCCAGGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGG----
* * * *
1475681 CTGACAATGCTCCGGCGATGGTGCCCCGGATGACAAAAAATGCGGCACCAGCACATGC-CTGAGC
764 GTG---ATGCTCCGACGATGGTGCCCAGG--GAAAAAAAATGCGGCACCAGCACATGCTC-GAGC
** *
1475745 TTAGCATGTGCACCCGCAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTCCG
823 CCAGCATGTGCACCCACAACCCTCG----G-TC----C--------GG--T---CT--G
* * * **
1475804 TATGCTTAGACTGGGAATGAACTCC-TATGCCTAAGTCAACCCATGAAACGAGCATGGGGGTGCT
1 -AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCT
* * * * * * * **
1475868 CAGCCAGCCAGAGGGGCAGGATGCACATGATGGGGATCGGTCAGGTCCCCCTCAGCATGCTGCCA
64 -AGCC-GCCA-A-GGGCAGGATACGCAAG-CGGGGATCGATC-GGTCCCCCTCAGCGTGCTACTG
* * * * * *
1475933 ATCCTGCTACCGCAACCCTCTGTCCAT-TTC-GATCTTAGACTAGGAATGAACTCCGTATGCCTA
123 ATCCTGCTGCTGCAACCCTCGGT-C-TGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * ** * *
1475996 AGCCAACCGACGAAATGAGCGGGCGGACGGGCGGGCACTACACTGGCCATTGATGC-GGATGCGT
186 AGCCAACCGATGAAACGAGCGGGAGG-CGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGC
* *
1476060 AAGCCATGGATCGATAAGGTGGTAGGTGGGTTTAGG--CA----C--A----T--C-T-----T-
250 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATG
* *
1476104 -C------A-------T--ATTCATACAATGGTCCCTTAGGCCTTCATGTGAAGTTTCATGGAAA
315 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAA
* ** *
1476153 GATGACTCGTTTTCTATTGTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTTAAATT
380 GATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATT
* * *
1476218 TTTTTAGAAGGGGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
445 TTTTCAGAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCAC
* * * * *
1476283 AAAAATATTCAGCTAAAAAATCGATGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGACCCCT
508 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
1476348 TTTTAGACACTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
573 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
1476413 TGAGTTATCGAGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGC
638 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* ** * * * * *
1476478 ACATCATGTGTGCACACCCCCCCGCCCGCCAATCATTGGAACCCTAATGCCGCTGGTCA-GGT--
703 ACATCATGTGCGCACACCCCCAGGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGGTGA
* * * * * *
1476540 T-CTCCGATGATGGTGCCCCGGGCGAAAAAAATGCAGCACCAGCACATGCTAGAGCCCACCATGT
768 TGCTCCGACGATGGTGCCCAGGG-AAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
** *
1476604 GCACCTGCAACCCTCGATTCGATCCGATCTTAGACTAGGAATGAACTCTAT
832 GCACCCACAA-CC-C---TCG----G-TC-----C---G---G---TCT-G
* * * *
1476655 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTA
1 AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCT-
* * * *
1476720 AGCCAGCCAGAGGGGCAGGATACGCAAGCCGGGGATTGGTCGGGTTCCCCTTAGCGTGCTACTGA
64 AGCC-GCCA-A-GGGCAGGATACGCAAG-CGGGGATCGATC-GGTCCCCCTCAGCGTGCTACTGA
* * ** * ** * *
1476785 TCTTGTTGCTGCAACCCTCTATTTGGT-TCGGTCTTAGACTAGGAATGAACTCCGTATACCTAAG
124 TCCTGCTGCTGCAACCCTCGGTCTGGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
1476849 CCAACGGACGAAACGAGC--GA-ACGGGCGAGCACTACGCCGGCCAGAGAGGCGTGATGCGTAAG
188 CCAACCGATGAAACGAGCGGGAGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAG
* * * * ** *
1476911 CCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCTCTTCTTCATATTTTTGCTGTGCCAATACCA
253 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * * * *
1476976 TTTTTATGGCTTATAAATTCATACATTGGTCTCTTAAGCCTTCATGTGAACTTTGATGGCAAGAT
318 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAT
* * *
1477041 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTAC-AGGATTTTTTTAAAATTTC
383 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTT
* * *
1477105 TTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGTATGCACAA
447 TTCAGAA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCACAA
* * *
1477170 AAAAATTCAGCTAAAAACTCAAAGTGTATAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
510 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
1477235 TCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTGTG
575 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
1477300 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
640 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
1477365 ATCATGTGCGCACACCCACTGGCCCCCCAATCGTCGGAACCCCAATGCCACCGGTCAGGTTTTTT
705 ATCATGTGCGCACACCCCCAGGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGG------
* * * * *
1477430 GATGATGCTCCAACGATGGTGCCTCAGGTGAAAAAAATTGTGGCACCAGCACCTGCCCGAGCCCA
764 G-TGATGCTCCGACGATGGTGCC-CAGG-GAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCA
1477495 GCATGTGCACCCACAACCCTCGGTCCGGTCTG
826 GCATGTGCACCCACAACCCTCGGTCCGGTCTG
*
1477527 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGTGCTCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCT-A
*
1477592 GCCAGCCAAAGTTGCAGGATACGCAAGTCGGGGATCGATCGAGTCCCCCTCAGCGTGCTACTGAT
65 GCC-GCC-AAG-GGCAGGATACGCAAG-CGGGGATCGATCG-GTCCCCCTCAGCGTGCTACTGAT
* *
1477657 CCTGCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
125 CCTGCTGCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
1477722 AACCGATGAAACGAGCGGGTAGGTGGGCGGGCACTACGCTGACTAGAGAGGCGGGATGCGCAAGC
190 AACCGATGAAACGAGCGGG-AGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGC
* *
1477787 CGTGGATCGATAGGGTGGTGGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCAT
254 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
*** *
1477852 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAAATTTCATGTGAAGTTTCATGGCAAGACG
319 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATG
* * * * * **
1477917 ACGCATTTTCTATTTTTCATGATTTTTGAAACCTTTTACGATTCGGGATTTTTTTAATTTTTTTT
384 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT
* * * *
1477982 GAGATGACGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTGGGCATGCATAAAA
449 CAGAAGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT-GGCATGCACAAAA
* * *
1478047 AAATTCAGCTAAAAACTTGAATTGTACAGGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTC
512 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
1478112 AGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTTAG
577 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
1478177 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGACCAAGTACTAGCACCCATCGCACAT
642 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * *
1478242 CACATGCGCACACCCCCCAGCCCCCCCAATCGTCGGAACCCCAATACCGCTGGTCAGGTACTCTG
707 CATGTGCGCACA-CCCCCAGGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCA-G------G
* ** * * *
1478307 GCGATGCTCCTGGTGATGGTGGCCCGGGTGAAAAAAAATACGGCACCAGCACATGCTCAAGCCCA
764 GTGATGCTCC-GACGATGGT-GCCCAGG-GAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCA
* * * * *
1478372 GCCTATGCACCCACAACCCTCGGTCTGATCCG
826 GCATGTGCACCCACAACCCTCGGTCCGGTCTG
*
1478404 ATCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAACCCACGAAATGA--GT----GTG-T--
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTAG
* * * * *
1478460 ------------GGAT---C-AGC-----T-G---GGTCCCCCTTAGCGTGCTGCCGATCTTGGT
66 CCGCCAAGGGCAGGATACGCAAGCGGGGATCGATCGGTCCCCCTCAGCGTGCTACTGATCCTGCT
* * * * * * *
1478500 GCCGTAACCCTCAGTCCGGACCAATCTTAGACGGGGAATGAACTCCGTATGCCTAA-CCAACCGA
131 GCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
*
1478564 TGAAACGAGCGGGCGGGCGGGCGGGCACTACG-TCGGCCAGAGAGGCGGGATGCGCAAGCCAGTG
196 TGAAACGAGCGGG-AGGCGGGCGGGCACTACGCT-GGCCAGAGAGGCGGGATGCGCAAGCC-GTG
*
1478628 GATCGATTGGGTGGTAGGTGGG-TTAGGCACATCTTCATATCTT-TGCCATGCCAATGCCATTTT
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TTCTGCCATGCCAATGCCATTTT
*
1478691 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACT
* * *
1478756 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGA-TTTTTAAAAATTTTTTCAG
387 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAG
*
1478820 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
452 AA-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAA
* *
1478885 TTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
515 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
1478950 CACTTTAATAGCTACTGGCAGCAAACCTGTAAAATATCCAAATGCCTTCTTTAA-GAGGTGTTAG
580 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-CAAATG-C-TCTTTAAGGGGGTGTGAG
**
1479014 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAA-TACCAGCACCCATCTTACAT
642 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
1479077 CATTTACGCACAGCCCCAGGCACCCCCCAATTC-ACGGAA--CCAATGCCGTCGGTCAGGTTCTC
707 CATGTGCGCACACCCCCAGG--CCCCCCAA-TCGTCGGAACCCCAATGCCGCCGGTCAGG--GT-
* * * * * * * *
1479139 CACGATGCT-C-ATGGAT-GTGCCCCGGCAAAAAAAAAGTGACACCAGTACATGC-CTGAACCCA
766 ---GATGCTCCGA-CGATGGTGCCCAGGGAAAAAAAATGCGGCACCAGCACATGCTC-GAGCCCA
* * *
1479200 GCATGTGCACCCA-TA-CCTC--TCTGGTCCG
826 GCATGTGCACCCACAACCCTCGGTCCGGTCTG
* * * *
1479228 ATC-TAGA-TGGGAATGAACTCCGTTATCCTGGCTGGAA-TGAACTTCATCCAGTCAACCTG-GC
1 ATCTTAGACTGGGAATGAACTCCG-TA---TGCCT--AAGTCAAC-CCA--C-G--AA-ATGAGC
* * * *
1479289 GTA-GGGTGCTA-CCGCC--GGAGCACG---CACAAGCCGGGATCGATCGGTCCCCCTCAGTG-G
53 GTACGGGTGCTAGCCGCCAAGG-GCAGGATACGCAAGCGGGGATCGATCGGTCCCCCTCAGCGTG
* * ** * *
1479346 CT-GTCGAT-CTACT-CTGTCAACCCT-GGTCTGACCCAATCATAGACTGGGAATGAACTCCGTA
117 CTACT-GATCCTGCTGCTG-CAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTA
** * * * ** *
1479407 TGCCTAAGCCAACCGATGAAATAAGTGGGTGGGCGGGTAGGTAGGCACTATACCGGCCAGAGAGG
180 TGCCTAAGCCAACCGATGAAACGAGCGGG-AGGCGGG--CG--GGCACTACGCTGGCCAGAGAGG
* * * *
1479472 CGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATATCTGG
240 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
1479537 CACGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCATGTGAAGT
305 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* * * * *
1479602 TTCTTGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAGATTTTTTACGATTTGAGATTT
370 TTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTT
* * **
1479667 TTTTAAAATTATCTCAGAAGGAGTTTTGGCCCCAAACTTCATTAGACGTGATCCTTGTATTTTTG
435 TTTTAAAATTTTTTCAGAA-GAGTTTTGGCCCCAAACTT-GGTAGACGTGATCCTTGTATTTTT-
* *
1479732 TTGGCATGCACAAAAACATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAA
497 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAA
* * * *
1479797 AAGTGTCCCAATTTCAAACACTTTAATGGCTCCTGGCAGCAAACTTGTAAAATCTCAAATGCTCT
562 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
1479862 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCGGGCAAATATAAGGGCCAAGTACCA
627 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
**
1479927 GCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCAATCGTCGGAACCCCAATGCCGCC
692 GCACCCATCGCACATCATGTGCGCACACCCCCAGGCCCCCCAATCGTCGGAACCCCAATGCCGCC
*
1479992 GGTCA-GGT--T-CTCCGACGATGGTGCCCCGAGAGAAAAAAAAATGCGGCACCAGCACATGCTC
757 GGTCAGGGTGATGCTCCGACGATGGTG-CCC-AG-GGAAAAAAAATGCGGCACCAGCACATGCTC
* *
1480053 GAGCCTAGCATGTGCACCCTCAACTCTCGGTCTGGTCTGATTTTAGACTGGGAATGAACTCCG
819 GAGCCCAGCATGTGCACCCACAAC-C-C--TC-GGTC----------C--GG--T---CT--G
* * *
1480116 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
1 -AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCT
* * * * * * * *
1480181 CAGTCGGCCAGAGGGCCGGATAGGTAAGCCGGGGATCGATCGGGTCCTCCTCTA-CGAGCTGCCG
64 -AG-CCGCCA-AGGGCAGGATACGCAAG-CGGGGATCGATC-GGTCCCCCTC-AGCGTGCTACTG
* *
1480245 ATCCTACTGCTGCAACCCTCGGT-TCGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
123 ATCCTGCTGCTGCAACCCTCGGTCT-GGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
1480308 AGCCAACCGATGAAACGAGC-GGCGGCGGGCGGGCACTAC-ATCGGCCAAAGAGGCGGGATGCGC
186 AGCCAACCGATGAAACGAGCGGGAGGCGGGCGGGCACTACGCT-GGCCAGAGAGGCGGGATGCGC
*
1480371 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGA-GCCAAT
250 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCC-ATGCCAAT
* *
1480435 GCCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTATGCCTT
314 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
1480481 GTAAGATTCA
Statistics
Matches: 4677, Mismatches: 608, Indels: 567
0.80 0.10 0.10
Matches are distributed among these distances:
822 15 0.00
823 6 0.00
824 11 0.00
826 7 0.00
827 7 0.00
828 41 0.01
829 6 0.00
830 3 0.00
831 4 0.00
832 1 0.00
833 9 0.00
834 21 0.00
835 196 0.04
836 226 0.05
837 146 0.03
838 11 0.00
839 1 0.00
841 1 0.00
842 1 0.00
847 24 0.01
848 42 0.01
849 4 0.00
850 68 0.01
851 177 0.04
852 11 0.00
854 2 0.00
855 15 0.00
856 8 0.00
857 6 0.00
858 44 0.01
859 34 0.01
860 47 0.01
861 17 0.00
862 406 0.09
863 236 0.05
864 53 0.01
865 180 0.04
866 2 0.00
868 1 0.00
869 2 0.00
870 4 0.00
871 180 0.04
872 13 0.00
873 551 0.12
874 18 0.00
875 519 0.11
876 47 0.01
877 118 0.03
878 3 0.00
879 3 0.00
880 1 0.00
881 8 0.00
882 14 0.00
883 6 0.00
884 3 0.00
885 390 0.08
886 6 0.00
887 10 0.00
888 8 0.00
889 145 0.03
890 6 0.00
891 19 0.00
892 29 0.01
893 15 0.00
894 16 0.00
895 60 0.01
896 24 0.01
897 49 0.01
898 2 0.00
899 56 0.01
900 232 0.05
901 29 0.01
902 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (857 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTAG
CCGCCAAGGGCAGGATACGCAAGCGGGGATCGATCGGTCCCCCTCAGCGTGCTACTGATCCTGCT
GCTGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
TGAAACGAGCGGGAGGCGGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCAGGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGGTGATGCTCCGACGATG
GTGCCCAGGGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCACAACCCT
CGGTCCGGTCTG
Found at i:1480131 original size:26 final size:26
Alignment explanation
Indices: 1480095--1480146 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1480085 TGGTCTGATT
1480095 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
1480121 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
1480147 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:1490222 original size:25 final size:26
Alignment explanation
Indices: 1490179--1490230 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
1490169 CTAGTCTGAT
* *
1490179 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
1490205 CTTAGACT-GAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
1490230 C
1 C
1490231 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:1490282 original size:899 final size:885
Alignment explanation
Indices: 1488410--1491065 Score: 3235
Period size: 896 Copynumber: 3.0 Consensus size: 885
1488400 GGTTGGATAA
*
1488410 TAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACA-AAACGAGCGTGCGGGCGCTCAGCC
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-AGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * **
1488474 AGCCAGAGGGGGAGGATGCGTAAGCCGGGGATCGATTGGGTTCCCCTCTGCGTGCTACTGATCCT
65 AGCCAGAGGGGCAGGATGCGCAAG-CGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCT
* * *
1488539 GCTACCGCAACCCCCAATTTGGTTCGATCTTTGACTGGGAATGAACTCCGTATGTCTAAGCCAAC
129 GCTACCGCAACCCTC-ATTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
1488604 CGACGAAATGAGCGGGCAGGCAGGCAGGCACTAAGTCGGCCAGAAAGACGGGATGCGCAAGCTGT
193 CGACGAAACGAGCGGG-GGGTAGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * *
1488669 GGATCGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTTTGCGATGCCAATGGCATTTT
257 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTTT
*
1488734 TA-GGCTTGTAAATTCA-AACAATGGTCCCTTAAGCCTTCATGTGAAGTTTGATTGGCAAGACGA
322 TATGGCTTGTAAATTCATAA-AATGGTCCCTTAAGCCTTCATGTGAAGTTTCA-TGGCAAGACGA
1488797 CCGTTTTTCTATTTTTCATGATTTGAAAACTTTTTACAGTTCGGATTTTTTTAAAAATTTTTCAG
385 CCG-TTTTCTATTTTTCA-GATTTG-AAACTTTTT--AGTTCGGATTTTTTT-AAAATTTTTCAG
* * ** * *
1488862 AAGAGTTTT-GCCTCAAACTTGCTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
444 AAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAAT
* * *
1488926 TCAGCTAAAAACTCGATGTGTACAGGATTTTGTGACCATTTCAAAAAAGTGTCCCAATTTCAGAC
509 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGAC
* * *
1488991 ACTTTAATGGCTACTGGCAACAAACTTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCT
574 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
1489056 CAATGTTGGATGAGGGATA-TGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCAT
639 CGAGGTTTGATGAGGGATAGT-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * * *
1489120 GTTCGCACA-CCCCACAG-CCCCTCCAATCGCCGGAACCAAAATGCTGCCGGCAAGGTTCTTCGG
703 GTGCGCACACCCCCCCGGCCCCCT-CAATCGTCGGAACCCAAATGCCGCCGTC-AGGTTCTCCGG
* * * ** * *
1489183 TGATGCTCCGGTGATGGTGGCTCGGGTG-AAAAAAATGTGGCACCAGCACATGCTCGAGTCCAGC
766 TGATGCTCCGGTGATGGT-GCCCGAGCGAAAAAAAATACGG--CCAGCACATGCCCGAGCCCAGC
* * * * *
1489247 CTCTACACCCGTAACCTCGGTCCTGTTCT-ATCTTAGATTAGGAATGAAC-TCTGTATGCT
828 ATGTGCACCCGTACCCTCGGT-CTG-TCTGATCTTAGACTAGGAATGAACTTC-GTATGCT
* * * * *
1489306 TAGAATGGGAATGAACTCCGTACGCCTAAGTCAACGCAAGAAACGAGCGTGCGGCCGGTCAGCCA
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCA
1489371 GCCAGAGGGGCAGGATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTG
66 GCCAGAGGGGCAGGATGCGCAAG-CGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTG
* * *** ** * *
1489436 CTACTGTAACCCTCAGTCCAGACCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACT
130 CTACCGCAACCCTCA-TTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
1489501 GACGAAACGAGCGGGGGGTGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGG
194 GACGAAACGAGCGGGGGGTAGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * *
1489566 ATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTA
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTTTTA
*
1489631 TGGCTTGTAAATTCATAAAATGGTCCCTTAAGACTTCATGTGAAGTTTCATGGCAAGACGACTCG
324 TGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC-CG
1489696 TTTTCTATTTTTCAAGAATTTTGAAACTTTTTATTGTTCGAGATTTTTTTAAAATTTTTTCAGAA
388 TTTTCTATTTTTC-AG-A-TTTGAAACTTTTTA--GTTCG-GATTTTTTTAAAA-TTTTTCAGAA
* * *
1489761 GAAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTCGAAAGCACAAAAAAATT
446 G-AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATT
1489826 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACA
510 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACA
* * *
1489891 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGAGGTGTGAGTTGTC
575 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
1489956 GAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGT
640 GAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
*
1490021 GCGCACACCCCCCCGGCCCCCTCAATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGA
705 GCGCACACCCCCCCGGCCCCCTCAATCGTCGGAACCCAAATGCCGCC-GTCAGGTTCTCCGGTGA
* *
1490086 TGCTCCGGAGATGGTGCCCGAGCGAAAAAAAATACGATGCCAGCACATGCCCAAGCCCAGCATGT
769 TGCTCCGGTGATGGTGCCCGAGCGAAAAAAAATACG--GCCAGCACATGCCCGAGCCCAGCATGT
*
1490151 GCACCCGTATCCCTCAGTCTAGTCTGATCTTAGACTAGGAATGAACTTCGTATGCT
832 GCACCCGTA-CCCTCGGTCT-GTCTGATCTTAGACTAGGAATGAACTTCGTATGCT
* * * * *
1490207 TAGACT-GAAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCA
* * * *
1490271 GCCAG-GGGGCAGGATACGCAAGCTGAGGATCGGTCGAGTCCCCCTCTGCGTGCTGCCAATCTTG
66 GCCAGAGGGGCAGGATGCGCAAGC-GAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTG
* * * * *
1490335 CTGCGGCAACCCTCTATTTGGTTTGGTCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACC
130 CTACCGCAACCCTC-ATTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
1490400 AACGAAACGAGC---GGGTAGGCGGGCACTACGTCGACCAGAGAGATGGGATGCGCATGCCGTGG
194 GACGAAACGAGCGGGGGGTAGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * *
1490462 ATCGATAGAGTGGTAGGTGAGTTTAGGCACATCTTCATTTTTATGCCGTGCCAATACCATTTTTA
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTTTTA
* * *
1490527 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGATGA-C--
324 TGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCGT
1490589 --TC-A----TC----TT----C--------T---A-TTTTTTAAAATTTTTCAGAAGGAGTTTT
389 TTTCTATTTTTCAGATTTGAAACTTTTTAGTTCGGATTTTTTTAAAATTTTTCAGAA-GAGTTTT
* * * *
1490627 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTGAGCGTGCGCAAAAATATTCAGCTAAA
453 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAA
* * * * * * *
1490692 AACTTGAAATGTATAGGATTTTGTGACCATTTGAAAAAAGCGTCCCCAATTCAGACACTTTAGTG
518 AACTCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
1490757 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTCGAGGTTTG
583 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * * *
1490822 ATGAGGGACAGGGGGCCAATATAAGGTCAAAGTACCAGGACCCATCGCACATCATGTGCGCACAC
648 ATGAGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * * * *
1490887 CCCACCCGGCCCCCCCAATCGTCGAAAGCCTAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCG
713 CCC-CCCGGCCCCCTCAATCGTCGGAACCCAAATGCCGCC-GTCAGGTTCTCCGGTGATGCTCCG
1490952 GTGATGGTGCCCCGAGC-AAAAAAAGATACGGCACTAGCACATGCCCGAGCCCAGCATGTGCACC
776 GTGATGGTG-CCCGAGCGAAAAAAA-ATACGGC-C-AGCACATGCCCGAGCCCAGCATGTGCACC
* * * *
1491016 TGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
837 CGT-ACCCTCGGT-CTGTCTGATCTTAGACTAGGAATGAACTTCGTATGC
1491066 CTAAGCCAAC
Statistics
Matches: 1547, Mismatches: 178, Indels: 106
0.84 0.10 0.06
Matches are distributed among these distances:
858 257 0.17
859 80 0.05
860 82 0.05
861 2 0.00
864 1 0.00
874 1 0.00
878 2 0.00
885 2 0.00
889 1 0.00
890 2 0.00
894 2 0.00
895 128 0.08
896 400 0.26
897 26 0.02
898 7 0.00
899 353 0.23
900 153 0.10
901 45 0.03
902 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTGCGGGCGCTCAGCCA
GCCAGAGGGGCAGGATGCGCAAGCGAGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGC
TACCGCAACCCTCATTTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGGGGTAGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACCGTTT
TCTATTTTTCAGATTTGAAACTTTTTAGTTCGGATTTTTTTAAAATTTTTCAGAAGAGTTTTGGC
CCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAGGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCGGCCCCCTCAATCGTCGGAACCCAAATGCCGCCGTCAGGTTCTCCGGTGATGCTCCGGTGAT
GGTGCCCGAGCGAAAAAAAATACGGCCAGCACATGCCCGAGCCCAGCATGTGCACCCGTACCCTC
GGTCTGTCTGATCTTAGACTAGGAATGAACTTCGTATGCT
Found at i:1492021 original size:731 final size:718
Alignment explanation
Indices: 1490599--1492517 Score: 2384
Period size: 731 Copynumber: 2.6 Consensus size: 718
1490589 TCATCTTCTA
* *
1490599 TTTTTTAAAATTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
1 TTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * * * *
1490664 -TGAGCGTGCGCAAAAATATTCAGCTAAAAACTTGAAATGTATAGGATTTTGTGACCATTTGAAA
66 TTG-GCATGCG-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAA
* * *
1490728 AAAGCGTCCCCAATTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
129 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * *
1490793 TTTAAGGGGGGGTGAGTTCTCGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGTCAAAGTACC
194 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
1490858 AGGACCCATCGCACATCATGTGCGCACACCCCACCCGGCCCCCCCAATCGTCGAAAGCCTAATGC
259 AGCACCCATCGCACATCATGTGCGCACACCCCACCCGGCCCCCCCAATCG-CGGAACCCCAATGC
* * * * * *
1490923 CACCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCGAGCAAAAAAAGATACGGCACTA
323 CGCCGGTTAGGTTCTCTGACGATGCACCGGTGATGGGGCCACGAGCAAAAAAAGATACGG-ACTA
** * *
1490988 GCACATGCCCGAGCCCAGCATGTGCACCTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
387 GCACACCCCCGAGCCCAGCATCTGCACCTATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
* * *
1491053 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGACGGGTACTACGTCG
452 CAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGTGGACGGGCACTACGCCG
* * * * * *
1491118 GCTAGAGAGGCGGGATGCGTAACCCGTTGATTGCTAGTGGGGTAGGTGGGTTTAGGCACATCTTC
516 GCCAGAGAGGCGGGATGCGTAACCCATGGATCGATAGTGGGGTAGGTGGGTTTAGGCACATCGTC
1491183 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
581 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
1491248 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGG
646 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTT-CGA
* *
1491313 TTCGGGATT
710 TTCCGAATT
*
1491322 TTTTTTAAATTTTTTCAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
1 TTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* **
1491387 TTGGCATGCGAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAGCAAGTGAAAAA
66 TTGGCATGCGAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
* *
1491452 AATGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
131 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
1491517 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACTAG
196 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
1491582 CACCCATCGCATATCATGTCCGTACATCGCCCCCCCCGGCCCCCCCAATCGCGGAACCCCAATGC
261 CACCCATCGCACATCATGTGCG--CA-CACCCCACCCGGCCCCCCCAATCGCGGAACCCCAATGC
* * * * **
1491647 CGGCGGTTAGGTTCTCCGATGAAACGA-GCGAGCGG-GCCA-GAGGGGCAGGATGCACAAGTCGA
323 CGCCGGTTAGGTTCT-C--TG--ACGATGC-ACCGGTG--ATG-GGGCCACGA-GCA-AA--AAA
* * ** * *** *
1491709 GGAT-CGG-CTGGGTC-CCCCTCTGTGTGTAGCTGATCCTGCTATC-ATAACCCTCGGTCCGGTC
375 AGATACGGACTAGCACACCCC-C-GAGCCCAGC--AT-CTGC-ACCTATAACCCTCGGTCCGGTC
* *
1491770 TGATCTTAGACTTGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGC-G-
434 TGATCTTAGACTGGGAATCAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGT
* *
1491833 GG-CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCATGGATCGATAAG-GTGGTAGGT
499 GGACGGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAACCCATGGATCGAT-AGTGGGGTAGGT
1491896 GGGTTTAGGCACATCGTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
563 GGGTTTAGGCACATCGTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
1491961 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAT
628 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
1492026 TTTTAAAACTTTTTCGATTCCGAATT
693 TTTTAAAACTTTTTCGATTCCGAATT
* * * * * *
1492052 TTTTTGAAAGTTTTTTTC-GAGGGAGTTTTGGCTCTAAACTTGGTAGATGTGATCCTTATATTTT
1 TTTTTTAAA--TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * *
1492116 TGTTGGCATGCATAAAAAAATTCAACTAAAAACTCTAAGTGTACAGGATTTTGTGACCATTTGAA
64 TGTTGGCATGC-GAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAA
*
1492181 AAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
128 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
1492246 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTAC
193 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * * *
1492311 GACCACCCATCACACATCATGTGCGCACACCCCTCCC-GACCCCCCAATCATCGGAACCCCAATG
258 CAGCACCCATCGCACATCATGTGCGCACACCCCACCCGGCCCCCCCAATC-GCGGAACCCCAATG
* * * *
1492375 CCGCCGGTTAGGTTCT-TCGACGATGCTCCGGCGATGGTGGTC-CGGGCGAAAAAAATG-TGAC-
322 CCGCCGGTTAGGTTCTCT-GACGATGCACCGGTGATGG-GGCCACGAGC-AAAAAAA-GAT-ACG
* ** * * * * * *
1492436 -ACCAGCACATGCCCAAGCCCAGCATGTGCA-CTCGTAACCCTCGGTCTGGTCCGATCTTGGACT
382 GACTAGCACACCCCCGAGCCCAGCATCTGCACCT-ATAACCCTCGGTCCGGTCTGATCTTAGACT
* *
1492499 TGGAATGAACTCCGTATGC
446 GGGAATCAACTCCGTATGC
1492518 TTAGACTGGA
Statistics
Matches: 1027, Mismatches: 128, Indels: 88
0.83 0.10 0.07
Matches are distributed among these distances:
715 1 0.00
716 1 0.00
717 47 0.05
718 2 0.00
720 6 0.01
721 5 0.00
722 193 0.19
723 72 0.07
724 38 0.04
725 27 0.03
726 1 0.00
727 2 0.00
728 14 0.01
729 43 0.04
730 26 0.03
731 248 0.24
732 210 0.20
733 4 0.00
734 6 0.01
735 79 0.08
736 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (718 bp):
TTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
TTGGCATGCGAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCACCCGGCCCCCCCAATCGCGGAACCCCAATGCCGC
CGGTTAGGTTCTCTGACGATGCACCGGTGATGGGGCCACGAGCAAAAAAAGATACGGACTAGCAC
ACCCCCGAGCCCAGCATCTGCACCTATAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATCAAC
TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGTGGACGGGCACTACGCCGGCCAG
AGAGGCGGGATGCGTAACCCATGGATCGATAGTGGGGTAGGTGGGTTTAGGCACATCGTCATATT
TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTCGATTCCGA
ATT
Found at i:1494282 original size:26 final size:26
Alignment explanation
Indices: 1494246--1494298 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1494236 TCGAACCAAT
1494246 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1494272 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1494298 C
1 C
1494299 ATAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1497730 original size:26 final size:26
Alignment explanation
Indices: 1497694--1497743 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
1497684 TTGGTCCGGT
1497694 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
1497720 CTTAGACTGGGAATGAACTCTGTA
1 CTTAGACTGGGAATGAACTCTGTA
1497744 ACTAGTGTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:1497987 original size:836 final size:835
Alignment explanation
Indices: 1492517--1499384 Score: 7319
Period size: 836 Copynumber: 7.9 Consensus size: 835
1492507 ACTCCGTATG
* * * * ** ** *
1492517 CTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGGAAC-GAGCATAGGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-CGAAACTAAGTGTACAGGCGCTCAA
* * * * * ** * * *
1492581 TCGGCCAGAAGGGCAGGATGTGCAAGCCGGGGATTGGTCGGGTCCCCCTTTGTGTGCTGCCAATC
65 TCAGCCAGAGGGGCAGGATGCGCAAG-CGGGGATCGATCGGGTCCCCCTCAGCGTGCTGTCGATC
* * * * * * * * * *
1492646 CTGCTACCGCAACCCTTGGTCCAGCCCGATCTTAGATTGGGAATAAACT-TCGTATGCCTAAGCC
129 TTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCC
** *
1492710 AACCGACGAAACGAGCGGGCAGGCGGATGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGC
193 AACCGACGAAACGAGCGGGC--GCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGAGCAAGC
** * * *
1492775 CGCAGATAGATAGGGTGGTAGGTGAGTTTCGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT
* *
1492840 TTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCCTGTGAAGTTTCATGGCAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * * * * *
1492905 ACTCGTTTTCTATTTTTTATGATTTTTAAAACTTTTTACGGATGT-GCATTTTTTAAAAATATTT
386 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-T-TCGGATTTTTTTAAAATTTTT
* * *
1492969 TCAGAAGGAGTTTTGACGCCAAACTTGGTAGACGTGATCCTTGGATTTTTGTTGGCATGCACAAA
449 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
** * * * *
1493034 AAGGTTCAGCTAAAAACCCGAAGTATATAGCATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
1493099 CAGACACTTTAATGGCTATTGACAGCAAACCTGTAAAATTCTCAAATGCTCTTTAAGGGGGGGGG
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-TCTCAAATGCTCTTTAAGGGGGTGTG
* *
1493164 AGTTCTCAAGGTTTGGTGCAGGGATAGGGGGCCAATATAAGGGCCAAGTCACCCAGCACCCATCG
643 AGTTCTCGAGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCCAAGT-A-CCAGCACCCATCG
* ** **
1493229 CACATCATGTGCGCACAACCCCCC-ACCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTT
705 CACATCATGTGCGCAC-ACCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGTCACTCAGGTT
* *
1493293 CTTCGGCTGATGATGGTGCCCGGGGAAAAAAATACGGCACCAG-CAATGCCCGAGCCCAGCATGT
769 CTCCGGC----GATGGTGCCC---G------AT--GGCACCAGAC-ATGCGC-A-CCCA-CA-GT
* *
1493357 GCACCCACAACCCTCGTCTGGTCC-AT
814 GAACCCGCAA--CT--TC-GGTCCGAT
** * * *
1493383 CTTAGACTGGGAGACTGGAA-TCCGTATGCCTAAGTCAACCATGAAAC-GAGCG-ATC-GGGGCT
1 CTTAGACTGGGA-A-T-GAACTCCGTATGCCTAAGTCAACCCCGAAACTAAGTGTA-CAGGCGCT
** * * * * * * *
1493444 CAGCCGGCCAGAGGGGTAGGATGCACAAGTGGAGATCGGTCGGGTCCCCCTCAGCATGCTGTCGA
62 CAATCAGCCAGAGGGGCAGGATGCGCAAGCGGGGATCGATCGGGTCCCCCTCAGCGTGCTGTCGA
*** * * * * * * *
1493509 TCCAACTATCGA-AACCCTCAATCCGATC-CATTCTTCGACTGGGAATGAACTCCGTATGCCTAA
127 TCTTGCT-GCCACAACCCTCGATCCGGTCTGA-TCTTAGACTGGGAATGAACTCTGTATGCCTAA
* *
1493572 GCCAACCGACGAAACGAGC-GG-GCGGGCGGGCACAACGTCGGCCAGAGAGGCGGGATGTGCAAG
190 GCCAACCGACGAAACGAGCGGGCGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGAGCAAG
* * * * *
1493635 CCGTGTATCGATATGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTGCCTTGACAATGCCA
255 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
1493700 TTTTTATGGCTTGTAAATTCATACAATGGTCCCATAAGCCTTCATGTGAAGTTTCATGGCAAGAC
320 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
1493765 GACTCGTTTTCTATTTTTCATGATTTTTGAAATTTTTTACGGATGT-GGATTTTTTTATAATTTT
385 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-T-TCGGATTTTTTTAAAATTTT
*
1493829 TTCAGAAGGAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
448 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * * *
1493894 AAAAGTTCAGCTAAAAACCCGAAGTGTATAGCATTTTGTGACAATTTGAAAAAAGTGTCCCAATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-T
* *
1493959 TTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGT
577 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
1494024 GACTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
642 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
1494089 TATCATGTGCGCACAACCCCCCCGCCCCCCCAATCGCCGAAACCCCAATGCCGT-AGGTCAGGTT
707 CATCATGTGCGCAC-A-CCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGTCA-CTCAGGTT
* * *
1494153 CTCCGGTGATGGTGCCCGGGGCGAAAAAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGA
769 CTCCGGCGATGGTG-CC----CG--------AT--GGCACC-AGACATGCGC-A--CC--C---A
1494218 GCAGCTGCAAACCTCATTTCGAACCAATCTTAGACTGGGAATGAACTCCGTAT
810 -CAG-TG--AA-C-C----CG---CAA-CTT---C---G---G---TCCG-AT
* * ** *
1494271 GCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAAC-GAGCATGC-GAGCGCT-
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-CGAAACTAAGTGTACAG-GCGCTC
* * * * * *
1494333 AAGCCGGCCAGAGGGGCAGGATGCGTAAGACGGGGA-CTGGTCGGGTCCCCCTTAGCGTACTGGT
63 AA-TCAGCCAGAGGGGCAGGATGCGCAAG-CGGGGATC-GATCGGGTCCCCCTCAGCGTGCT-GT
* * * ** ** *
1494397 -GATCCTACTGCCGCAACCCTCCG-TCCAATCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
124 CGATCTTGCTGCCACAACCCT-CGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCT
* * * * * *
1494460 AAGCCAACCAATGAAACGAGCAGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCG
188 AAGCCAACCGACGAAACGAGC-GG-GCGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGAG
* * *
1494525 CAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCAAAT
251 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
* *
1494590 GCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGAGAAGTTTCATGGCA
316 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
* * * * * * *
1494655 CGACCACTCGTTTTCTATTTTTCACGATTTTT-AAAGATTTTTGCTGTTTGAGATTTTTTAAAAA
381 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTACGGTTCG-GATTTTTTTAAAA
* * * **
1494719 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGGCATGACCCTCATATTTTTGTTGGCATGC
444 TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
1494784 ACAAAATAATTCAGCTAAAATCTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
509 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
1494849 CATTTC-GAACACTTTAATGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
574 CATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
1494913 GTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGTGCCAATATAAGGGCCAAGTGCCAGCACCCAT
638 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* **
1494977 CGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGCAGGAACCCCAATGCCGTCGGTCAGG
703 CGCACATCATGTGCGCACACCCCCCGG-CCCCCCAATCGCCGGAACCCCAATGCCGTCACTCAGG
* * **
1495042 TTCTCCGGC-AGTGGTGCCTCGGGCGAGAAAAACTGAGGCATCAGCACATGCCCGAGCGTAGCA-
767 TTCTCCGGCGA-TGGTG-C-C---C--G----A-T--GGCACCAG-ACATGCGC-A-CCCA-CAG
* * *
1495105 TGTACCCCCGTAACCCTCGATTTGGTCCGAT
813 TG-A-ACCCGCAA----C--TTCGGTCCGAT
1495136 CTTAGACTGGGAATGAACTCCATATGTTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAA---C-------T---C----------C---GTATGCCTAAGTCAACCC
* ** * * * * * * * *
1495201 ACGAAAC-GAGCCTGCGGGCGCTGAGTCGGCCAGAGGGGCAGGATGCGCAAGCTTGGGATTGGTC
40 -CGAAACTAAGTGTACAGGCGCTCAATCAGCCAGAGGGGCAGGATGCGCAAGC-GGGGATCGATC
* * ** * *
1495265 GGGTCACCCTCAGCATGCTACCGATCTTGCTGCCACAACCCTCGATCCTGTCCCGATCTTAGACT
103 GGGTCCCCCTCAGCGTGCTGTCGATCTTGCTGCCACAACCCTCGATCCGGT-CTGATCTTAGACT
* *
1495330 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-GCGGGCGGGCACTACGCCG
167 GGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGCGGGCGGGCACTACGTCG
* * *
1495393 GCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTC
232 GCCAGAGAGGCGGGATGAGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1495458 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
297 ATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
1495523 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGG
362 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
1495588 TTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC-TGGTAGACGTGATCCTT
427 TTCG-GATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
1495652 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
491 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
1495717 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
556 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
1495782 AAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGC
621 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
*
1495845 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCAATCGTCGGAACCCC
686 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGCCGGAACCCC
** **
1495909 AATG-CGTCGGTCA-GTTCTCCGATGATGGTGCCCCGGGCGAAAAAAAATACGGCACCAGCACAT
751 AATGCCGTCACTCAGGTTCTCCGGCGATGGTG--CC---CG-------AT--GGCACCAG-ACAT
* *
1495972 GC-CTGAGCCCAACATGTGCACCCTCAACCCTCGGTCCGGTCCGAT
801 GCGC--A-CCC-ACA-GTGAACCCGCAA--CT---T-CGGTCCGAT
* *
1496017 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC-AAAATGAGTGTAC-GGACGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-CGAAACTAAGTGTACAGG-CGCTCA
* * * *
1496080 GTCGGCCAGA-GGGCAGGATACGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGAT
64 ATCAGCCAGAGGGGCAGGATGCGCAAG-CGGGGATCGATCGGGTCCCCCTCAGCGTGCTGTCGAT
* *
1496144 C-TACTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCC
128 CTTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
* * * *
1496208 AATCGATGAAATGA------GCGGGCGGGCACCACGTCGGCCAGAGAGGCGGGATGCA-CAAGCC
193 AACCGACGAAACGAGCGGGCGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATG-AGCAAGCC
* * *
1496266 GTGGATTGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCATT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* ** *
1496331 TTTGTGGCTTGTAAATTCATACAATGGTCTTTTAAGCCATCATGTGAAGTTTCATGGCAAGACGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
*
1496396 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCGGGGA-TTTTTTAAAATTTTTT
387 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC--GGATTTTTTTAAAATTTTTT
* * * *
1496460 CAAAAGGTGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
450 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
1496525 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
1496590 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1496655 TTCTCGAGG-TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* **
1496719 CATGTGCGCACACCCCCCGG-CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCCG
710 CATGTGCGCACACCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGTCACTCAGGTTC-TCCG
* *
1496783 GCGATGGTGCCCGGGCGAAAAAAAATGGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
774 GCGATGGTG-CC---CG-------AT-GGCACCAG-ACATGCGC-A-CCCA-CA-GTGAACCCGC
1496848 AACCTTCGTCCGGTCCTGAT
822 AA-C-T--T-CGGTCC-GAT
* * *
1496868 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-GAGCGT--GGGCGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-CGAAACTAAGTGTACAGGCGCTCAA
* * ** *
1496930 GCGGCCAGA-GGGCAGGATGCGCAAGC-GGGATCGGCCGGGTCCCCCTCAGCGTGCTGTCGATCC
65 TCAGCCAGAGGGGCAGGATGCGCAAGCGGGGATCGATCGGGTCCCCCTCAGCGTGCTGTCGATCT
* *
1496993 TGCTGCCGCAACCCTC-AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCACAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
*
1497057 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCC
194 ACCGACGAAACGAGCGGGC--GCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGAGCAAGCC
1497122 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
1497187 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
*
1497252 CTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTACGGTTCAGGATTTTTTTTAAATTTTTTC
387 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAAAATTTTTTC
1497316 A-AAGGAGTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAA
451 AGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
1497379 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
515 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
1497444 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
580 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * * *
1497509 TTCTTGATGTTTGATGAGGGATAGGGGACCAGTATAAGGGCCAAGTGCCAGCACCCATCACACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
1497574 CATGTGCGCATACCCCCCTGGCCACCCCCAATCGCCGGAACCCCAATGCCGTCACTCAGGTTCTC
710 CATGTGCGCACACCCCCC-GG-C-CCCCCAATCGCCGGAACCCCAATGCCGTCACTCAGGTTCTC
* * * * *
1497639 CGGCGATGGTGCCCG-T-GC-CCAG-CATGTGCA-CC-CA-T-AACCCTCGA-TTTGGTCCGGT
772 CGGCGATGGTGCCCGATGGCACCAGACATGCGCACCCACAGTGAACCCGCAACTTCGGTCCGAT
* * * * * *
1497694 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTAACT-AGTGTACAGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTA-A----G--TCAACCCCGAAACTAAGTGTACAGGC
** * *
1497758 ATTCAACCAGCCAGAGGGGCAGGAT-CGCAAGTCGGGGATCGATCGGGTCCCCCTCAGTGTGCTG
59 GCTCAATCAGCCAGAGGGGCAGGATGCGCAAG-CGGGGATCGATCGGGTCCCCCTCAGCGTGCTG
* **** * * *
1497822 CCGATCTTGCTATTGCAACCCTC-ACTCCGGTCTGATCTTAGATTGGGAATGAAGTCTGTATACC
123 TCGATCTTGCTGCCACAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCC
* *
1497886 TAAGCCAACCGACGAAACGAGCGGGCGACTGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGA
187 TAAGCCAACCGACGAAACGAGCGGGCG-C-GGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGA
*
1497951 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAA
250 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAA
1498016 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
315 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGC
1498081 AAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAACTTTTTACGGTTCGGATTTTTTTAAAAT
380 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGATTTTTTTAAAAT
* *
1498145 TTTTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCA
445 TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
1498210 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCC
510 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCC
1498275 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
575 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
1498340 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
640 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
1498405 CACATCATGTGCGCACACCCCCCGACCCCCCCAATCACCGGAACCCCAATGCCGTCGATCAGGTT
705 CACATCATGTGCGCACACCCCCCG-GCCCCCCAATCGCCGGAACCCCAATG-C--CG-TCA----
* * * *
1498470 CTCCGGTGATGCTCCGGCGATGGTTCCCCGGGCAAAAAAAAAATACGGCACTAGCACATGCCGGA
761 CTCAGGT--T-CTCCGGCGATGG-TGCCC--G----------AT--GGCACCAG-ACATG-CGCA
*
1498535 GCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCTGTAT
806 -CCCA-CA-GT------G-AA-CC-C-G-C-------AACTT---C--GG--T---C-C-G-AT
* * * * **
1498599 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC-GAGCGTGCGGGCATTCA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC-CGAAACTAAGTGTACAGGCGCTCA
* * * * * * * *
1498663 GTCGGCCAGAGGGACAGAATGCGCAAGCCGGGGATTGA-CGTGGTCCCCTTCTGCGTGCTGTTGA
64 ATCAGCCAGAGGGGCAGGATGCGCAAG-CGGGGATCGATCG-GGTCCCCCTCAGCGTGCTGTCGA
* * ** *
1498727 TCCTACTGCCACAACCCTCGATTTGGTCCGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAG
127 TCTTGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAG
* * * * ** *
1498791 CCAACCGATGAAATGAGCGGCCAGGCAGGCGGGCACTACACCGGCCAGAGAGGCGGGATGTGCAA
191 CCAACCGACGAAACGAGCGGGC--GCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGAGCAA
* * *
1498856 GCCATGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCC
254 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
* *
1498921 ATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCATGTGAAGTTTCATAGCAAGA
319 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
*
1498986 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGA-TTTTTTAAAATTTT
384 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTAAAATTTT
1499050 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAA
448 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
1499114 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1499179 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
1499243 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
643 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* ** *
1499308 ATCATGTGCGCACACCCCCC-GCCCCCCAATCGCC-GAACCCCAATGCCGCCGGTCAGGTTCTCT
708 ATCATGTGCGCACACCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGTCACTCAGGTTCTCC
1499371 GGCGATGGTGCCCG
773 GGCGATGGTGCCCG
1499385 GGCGAAAAAA
Statistics
Matches: 5293, Mismatches: 438, Indels: 525
0.85 0.07 0.08
Matches are distributed among these distances:
826 30 0.01
827 6 0.00
828 1 0.00
830 1 0.00
831 1 0.00
832 8 0.00
833 11 0.00
834 45 0.01
835 86 0.02
836 528 0.10
837 6 0.00
838 5 0.00
840 1 0.00
841 5 0.00
842 6 0.00
843 4 0.00
844 3 0.00
845 12 0.00
846 5 0.00
847 34 0.01
848 308 0.06
849 204 0.04
850 116 0.02
851 95 0.02
852 72 0.01
853 33 0.01
854 199 0.04
855 196 0.04
856 194 0.04
857 4 0.00
858 45 0.01
859 44 0.01
860 83 0.02
861 383 0.07
862 45 0.01
863 3 0.00
864 21 0.00
865 94 0.02
866 49 0.01
867 17 0.00
868 24 0.00
869 5 0.00
870 3 0.00
871 2 0.00
872 2 0.00
873 2 0.00
874 1 0.00
875 2 0.00
876 4 0.00
877 4 0.00
878 7 0.00
879 3 0.00
880 6 0.00
881 73 0.01
882 21 0.00
883 27 0.01
884 6 0.00
885 94 0.02
886 166 0.03
887 265 0.05
888 19 0.00
889 57 0.01
890 221 0.04
891 111 0.02
892 54 0.01
893 93 0.02
894 320 0.06
896 1 0.00
897 13 0.00
898 12 0.00
899 6 0.00
900 127 0.02
901 421 0.08
902 82 0.02
903 5 0.00
904 1 0.00
905 2 0.00
906 28 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (835 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCCGAAACTAAGTGTACAGGCGCTCAAT
CAGCCAGAGGGGCAGGATGCGCAAGCGGGGATCGATCGGGTCCCCCTCAGCGTGCTGTCGATCTT
GCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGAGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGATTTTTTTAAAATTTTTTCAGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCCGTCACTCAGGTTCTCCGGCGATGG
TGCCCGATGGCACCAGACATGCGCACCCACAGTGAACCCGCAACTTCGGTCCGAT
Found at i:1498603 original size:26 final size:26
Alignment explanation
Indices: 1498574--1498626 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1498564 CTGGTTTGAT
*
1498574 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1498600 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1498626 C
1 C
1498627 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1499487 original size:26 final size:26
Alignment explanation
Indices: 1499458--1499508 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1499448 CCGGTCTGAT
1499458 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
1499484 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
1499509 GCCCAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:1502022 original size:38 final size:38
Alignment explanation
Indices: 1501968--1502045 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
1501958 CAAGCGCGCA
*
1501968 GGCGTTCAGCCAACCAAAGGGGTAGGATGCGCAAGTCG
1 GGCGTTCAGCCAACCAAAGGGGTAGGATGCGCAAGCCG
* *
1502006 GGCGTTCAGCCGACCAAAGTGGTAGGATGCGCAAGCCG
1 GGCGTTCAGCCAACCAAAGGGGTAGGATGCGCAAGCCG
1502044 GG
1 GG
1502046 GATTGGCCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.24, G:0.38, T:0.13
Consensus pattern (38 bp):
GGCGTTCAGCCAACCAAAGGGGTAGGATGCGCAAGCCG
Found at i:1503704 original size:875 final size:874
Alignment explanation
Indices: 1499484--1504328 Score: 6251
Period size: 875 Copynumber: 5.5 Consensus size: 874
1499474 ACTCCGTATC
* * ** * *
1499484 CTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCTCGAAACGA----GCGTGCAGGC-G-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * * * *
1499543 CTC-A-GCAGGCCAGAGAGGCGGGATCCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* **
1499606 GCACATCTTCATATCTCTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
1499671 CTTAAGCCTTCATGTGAAGTTTCTTGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * **
1499736 CTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTTACCCCAAACTTGGTAGA
261 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
1499801 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTC-------A-A--
326 CGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
1499856 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
1499921 TGTAAAATCCCAAATGCTCTTTAA-GTGGTGTGAGTTCTCGAGGCTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
1499985 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTTCGCACACACCCCGGCCCCCCCAAT
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAAT
* * * * *
1500050 TGTCGAAACCCCAATGCTGCCGGTTAGGTTCTCCGG-CGATGCTCCGACGATGGTGCCCTGGGCG
585 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGGACGATGCTCCGGCGATGGTGCCC-GGGCG
* * * **
1500114 AAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGAAACCCTCAATCCGGTC
648 -AAAAAAATATGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTC
* * *
1500179 CGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCT
711 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGCGCT
* * * * * * * *
1500244 CAGTCGGCCAGAGAGGCAAG-ATGCGTAAGCCAGGGATCGACCGGGTCCCCTTCAGCGTGCTACC
776 CAGCCGGCCAGAGGGGCCAGTATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCATCGTGCTACC
*
1500308 GATCCTGCTGCCACAACCCTCGGTCCGGTCTGAT
841 GATCCTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * * * * *
1500342 CTTAGACTAGGAATGAACTCCGTAAGACTAAGACAACCGACGAAACGAGCGGGTGGGTGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GG
**
1500407 CGGGCACTACGCCGGCCAGAGAGGTAGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
65 C---CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
* *
1500472 TTAGGCACATCTACATATTTCAGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
127 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
1500537 GTCGCTTAAGCCTTCATGTGAGGTTCCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
192 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTT
1500602 TGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
256 TGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
1500666 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTT
321 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG-T
1500731 ACAGGA-TTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
385 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
1500794 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
450 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
1500859 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-G-CCCC
515 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
*
1500921 CCAATCGCCGGAACCCCAAT---GCC-GTC-GGTTCT---ACGGAT-CT-CGGCGATGGTGCCCG
580 CCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGGAC-GATGCTCCGGCGATGGTGCCCG
*
1500976 GGCGAAAAAAAT-TGCGCACCCAGCACATTGCCCGAGCCCAGCATTTGCA-CCGCAACCCTCGGT
644 GGCGAAAAAAATATG-GCA-CCAGCACA-TG-CCGAGCCCAGCATGTGCACCCGCAACCCTCGGT
* *
1501039 CAGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-TGAAACGAGCGTGC
705 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACT-AAACGAGCGTGC
* * * * * *
1501103 GGGCGCTCAGCCGGCCAGAGGGG-CAGGT-TGCACAAGACAGGGATCGGTCGGGTTCCCCTCAGC
769 GGGCGCTCAGCCGGCCAGAGGGGCCA-GTATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCATC
* * *
1501166 GTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCAGTCCAAT
833 GTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * *
1501208 CTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAGGCGGGCGGGCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-GCGGGCGGGCGGGCGG
* * * *
1501273 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTAGTGGATCGATAGGGTGGTAAGTAGGTTTA
65 CCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1501338 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
130 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
1501403 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * * *
1501468 ACTTTTTATGGTTCAGGA-TTATTTCAAATTATTTCAGAAGGAGTTTTGGCCCCAAACTTGGTGG
260 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * * *
1501532 ACGTGATCGTTATATTTTTGTGGGCATGCACAAAAAATTTCAGTTAAAAACTCGAAGTGTATAGG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
**
1501597 ATTTTGTGATGATTTG-AAAAAGCTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 ATTTTGTGACCATTTGAAAAAAG-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
1501661 CTATAAAATCTCAAATGC-CGTTT-AGGGGGTGTGAGCTT-TCGAGGTTTCATGAGGGATAGGTG
454 CTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAG-TTCTCGAGGTTTGATGAGGGATAGGGG
1501723 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGGCCCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCC
* * * *
1501788 CAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGA---T---G-G-T-G-CCCCAGA
581 CAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGGACGATGCTCCGGCGATGGTGCCCGGG
* * * * * *
1501843 CGAAAAAAATACGGCACCAGCACATGCCTGAGGCGAGCATGTGCATCCACAACCCTCGGTCCGAT
646 CGAAAAAAATATGGCACCAGCACATGCC-GAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
* * * * * * *
1501908 CTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGCGCAGGCGT
710 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGCGC
*
1501973 TCAGCCAACCAAAGGGGTAGGATGCGCAAGTCGGGCGTTCAGCCGACCAAAGTGGTAGGATGCGC
775 TCAG----CC----------G--GC-C-A---GAG-G----G--G-CC--A---GT---ATGCGC
* * * * * *
1502038 AAGCCGGGGATTGGCCGGGTCCCCCTCAAT-GTGCTGCCAATTCTAG-TGCCATAACCCTTGGTC
803 AAGCCGGGGATCGGCCGGGTCCCCCTC-ATCGTGCTACCGATCCT-GCTGCCACAACCCTCGGTC
*
1502101 CAGTCCGAT
866 CGGTCCGAT
** ** * * *
1502110 CTTAGGTTGGGAATGAACTTTGTATGCCTAAGCAAACCGACGAAATGTGCGGGCGGGCGGGCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * *
1502175 TACTATGCCAGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
1502240 CCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATAGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
1502305 CTTAAGCCCTCATGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCATGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
1502370 CTTTTTACGGTTCGGGATTTTTATAAAATTTTTTTAGAAGGCGTTTTGGCCCCAAACTTGGTAGA
261 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
1502435 CGTGATCCTTGTAATTTTATTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAGGA
326 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
* * *
1502500 TTTTGTGACCATTTGAAAAAAGTGTCCTCTTTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
1502565 GTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTCATGAGGTATAGGGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
1502630 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCAATC
521 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATC
* * * **
1502695 GTTGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCTAGCGAA
586 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGGACGATGCTCCGGCGATGGTG-CCCGGGCGAA
* *
1502760 AAAAATACGGCACTAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGA
650 AAAAATATGGCACCAGCACATGCC-GAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGA
*
1502825 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAATGAGCGTGCGGGCGCTCAG
714 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGCGCTCAG
* * *
1502890 CCGGCCAG-GGGGCCAGTATGCGTAAGCTGGGGATCGGCCGGGTCCCCCTCATCGTCCTACCGAT
779 CCGGCCAGAGGGGCCAGTATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCATCGTGCTACCGAT
* * * *
1502954 CCTGCTACCACAACCCTCGATCTGGTCTGAT
844 CCTGCTGCCACAACCCTCGGTCCGGTCCGAT
* * * * *
1502985 CTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACCAACGAAATGAGCAGGCGAGCGGGCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * * * *
1503050 CATTACGTCGACCAGAGAGGCGGGATGCGCAAGTCATGGATTGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
1503115 GCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
1503180 CTTAAGCCCTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
1503245 CTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAATCTTGGTAGA
261 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
1503310 CGTGATCCTTCTATTTTTGTTGGCATGCACAAAAAAACTCAGCTAAAAGCTC-ACAGTGTACAGG
326 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAGG
*
1503374 ATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * **
1503439 TGTAAAATCTGAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGTTATA-GGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
1503503 AATATAAGGGCCATGTACCAGCACCCATCACAAATCATGTGCGCACACCCCTCCGGCCCCCCTAA
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCAA
* * * *
1503568 TCGTCGGAACCCCAATCCCGCCTGTCATGTTCTCGGACGATGCTCCGGCGATAGTGCCCGGGCGA
584 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGGACGATGCTCCGGCGATGGTGCCCGGGCG-
*
1503633 AAAAAAATGTGGCACCAGCACATGTCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTGGTCT
648 AAAAAAATATGGCACCAGCACATG-CCGAGCCCAGCATGTGCACCCGCAA-CC-C--TC-GGTC-
* * *
1503698 GATCTTAGATTGGGAATGAACTCCATACGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAG
706 ---C--------GG--T---C-CGAT---CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * ** * *
1503763 CCCA-TGAAACGAGCGTGTGGGTGCTCAGCCGGCCAGATAGG-CAGGATGCGCAAGCCGGGGATT
751 CCCACT-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCCAGTATGCGCAAGCCGGGGATC
* * ** * *
1503826 GGTCGGGTCCCCCTCTAT-GTCCTTTCGATCCTGCTGCCACAACCCTCGGTTCGGT-CAACT
815 GGCCGGGTCCCCCTC-ATCGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCGA-T
* *
1503886 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC-GGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * *
1503950 CACTACGTCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
1504015 GCACATCTTCATATTTCTGCCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
1504080 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
1504145 CTTTTTACAGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCATACTTGGTAGA
261 CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
1504210 TGTGATCTTTGTATTTTTGTTGGCATGCACAACAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
326 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
*
1504275 TTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
1504329 TAGACACCCA
Statistics
Matches: 3508, Mismatches: 332, Indels: 252
0.86 0.08 0.06
Matches are distributed among these distances:
858 41 0.01
861 6 0.00
862 231 0.07
863 256 0.07
864 89 0.03
865 30 0.01
866 238 0.07
867 45 0.01
868 8 0.00
869 30 0.01
870 240 0.07
871 38 0.01
872 2 0.00
873 5 0.00
874 66 0.02
875 629 0.18
876 25 0.01
877 3 0.00
878 79 0.02
879 99 0.03
880 7 0.00
881 2 0.00
882 1 0.00
883 2 0.00
884 2 0.00
885 2 0.00
886 2 0.00
890 2 0.00
891 1 0.00
892 4 0.00
894 2 0.00
895 1 0.00
896 2 0.00
897 3 0.00
898 6 0.00
899 1 0.00
900 366 0.10
901 391 0.11
902 326 0.09
903 95 0.03
905 1 0.00
908 1 0.00
909 3 0.00
910 1 0.00
911 1 0.00
913 123 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (874 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCGGACGATGCTCCGGCGATGGTGCCCGGGCGAAA
AAAATATGGCACCAGCACATGCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATC
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACTAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCCAGTATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCATCGTGCTACCGATCC
TGCTGCCACAACCCTCGGTCCGGTCCGAT
Found at i:1504439 original size:15 final size:14
Alignment explanation
Indices: 1504398--1504441 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
1504388 AATTCGGTTC
1504398 TTATTTTGTATTATTT
1 TTATTTT-TATT-TTT
1504414 TTATTTTTATTTTT
1 TTATTTTTATTTTT
*
1504428 TTCTTTTCTATTTT
1 TTATTTT-TATTTT
1504442 AGGCATTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.35
15 10 0.38
16 7 0.27
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (14 bp):
TTATTTTTATTTTT
Found at i:1504581 original size:25 final size:27
Alignment explanation
Indices: 1504518--1504581 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 27
1504508 TATTTATATG
1504518 TATTTTATTTATATAGTTATATATTTAT
1 TATTTT-TTTATATAGTTATATATTTAT
* * * *
1504546 TATTATATTATA-ATTTAT-TTTTTAT
1 TATTTTTTTATATAGTTATATATTTAT
1504571 TATTTTTTTAT
1 TATTTTTTTAT
1504582 CTTGTAATAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
25 15 0.50
26 5 0.17
27 5 0.17
28 5 0.17
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (27 bp):
TATTTTTTTATATAGTTATATATTTAT
Found at i:1505031 original size:19 final size:19
Alignment explanation
Indices: 1505004--1505041 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1504994 CCAGATTCCG
1505004 GTTGAATTTTTCAGTGAAA
1 GTTGAATTTTTCAGTGAAA
* *
1505023 GTTGCATTTTTCGGTGAAA
1 GTTGAATTTTTCAGTGAAA
1505042 ATTTCGGCCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.08, G:0.24, T:0.42
Consensus pattern (19 bp):
GTTGAATTTTTCAGTGAAA
Found at i:1505591 original size:5 final size:5
Alignment explanation
Indices: 1505581--1505659 Score: 56
Period size: 5 Copynumber: 15.6 Consensus size: 5
1505571 CCTTTTTACC
* * *
1505581 TTTAT TTTATT TTTATT TTTGT TTTACT TTT-C TTTAT TTTAT TTTTT
1 TTTAT TTTA-T TTTA-T TTTAT TTTA-T TTTAT TTTAT TTTAT TTTAT
* *
1505628 TTTGCT TTTAT TTTGT TTTA- -TTAT TTTAT TTT
1 TTT-AT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1505660 CTTTAAATAA
Statistics
Matches: 59, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
3 3 0.05
4 3 0.05
5 35 0.59
6 18 0.31
ACGTcount: A:0.13, C:0.04, G:0.04, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:1505595 original size:11 final size:11
Alignment explanation
Indices: 1505581--1505659 Score: 65
Period size: 11 Copynumber: 7.2 Consensus size: 11
1505571 CCTTTTTACC
1505581 TTTATTTTATT
1 TTTATTTTATT
1505592 TTTATTTT-TGT
1 TTTATTTTAT-T
* *
1505603 TTTACTTT-TC
1 TTTATTTTATT
1505613 TTTATTTTATT
1 TTTATTTTATT
**
1505624 TTT-TTTTGCT
1 TTTATTTTATT
*
1505634 TTTATTTTGTTT
1 TTTATTTT-ATT
1505646 TATTATTTTATT
1 T-TTATTTTATT
1505658 TT
1 TT
1505660 CTTTAAATAA
Statistics
Matches: 54, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
10 16 0.30
11 26 0.48
12 5 0.09
13 7 0.13
ACGTcount: A:0.13, C:0.04, G:0.04, T:0.80
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:1505619 original size:32 final size:31
Alignment explanation
Indices: 1505580--1505659 Score: 103
Period size: 30 Copynumber: 2.6 Consensus size: 31
1505570 TCCTTTTTAC
1505580 CTTTATTTTATTTTTATTTTTG-TTTTACTTTT
1 CTTTATTTTA-TTTTATTTTTGCTTTTA-TTTT
1505612 CTTTATTTTATTTT-TTTTTGCTTTTATTTT
1 CTTTATTTTATTTTATTTTTGCTTTTATTTT
* *
1505642 GTTT-TATTATTTTATTTT
1 CTTTATTTTATTTTATTTT
1505660 CTTTAAATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
29 8 0.18
30 17 0.39
31 9 0.20
32 10 0.23
ACGTcount: A:0.12, C:0.05, G:0.04, T:0.79
Consensus pattern (31 bp):
CTTTATTTTATTTTATTTTTGCTTTTATTTT
Found at i:1505825 original size:60 final size:59
Alignment explanation
Indices: 1505683--1506017 Score: 399
Period size: 59 Copynumber: 5.6 Consensus size: 59
1505673 TAAAAAAAAA
* * ***
1505683 TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAGGGT
1 TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCCAAAAAACTAT
* * *
1505742 TTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCCAAAAAACTAT
1 TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTCCAAAAAACTAT
*
1505802 TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCCAAAAAAAAATATAT
1 TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTCC---AAAAAA-CTAT
** * *
1505866 TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAAT-AAATTTTCAAAAAAGCAAT
1 TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCCAAAAAA-CTAT
* * * *
1505925 TTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT-AAATTAAAGTTT-CAAAACAA-TAT
1 TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT-TGAAAATAAAATTTCCAAAA-AACTAT
*
1505983 TTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTG
1 TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTG
1506018 CGCAAGAACA
Statistics
Matches: 240, Mismatches: 27, Indels: 19
0.84 0.09 0.07
Matches are distributed among these distances:
57 1 0.00
58 32 0.13
59 85 0.35
60 68 0.28
62 7 0.03
63 6 0.03
64 41 0.17
ACGTcount: A:0.42, C:0.10, G:0.14, T:0.33
Consensus pattern (59 bp):
TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTCCAAAAAACTAT
Found at i:1511541 original size:25 final size:26
Alignment explanation
Indices: 1511507--1511555 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
1511497 GTTACACTCT
1511507 AGAAATGCTAGAGAAGGCTAGAAGGG
1 AGAAATGCTAGAGAAGGCTAGAAGGG
1511533 AGAAA-GCTAGAGAAGGCTAGAAG
1 AGAAATGCTAGAGAAGGCTAGAAG
1511556 TGAGGGTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.45, C:0.08, G:0.37, T:0.10
Consensus pattern (26 bp):
AGAAATGCTAGAGAAGGCTAGAAGGG
Found at i:1515306 original size:26 final size:26
Alignment explanation
Indices: 1515270--1515322 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1515260 GTTGACTTAG
*
1515270 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1515296 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1515322 G
1 G
1515323 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1516205 original size:26 final size:26
Alignment explanation
Indices: 1516169--1516221 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1516159 GTTGACTTAG
*
1516169 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
1516195 GCATATGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
1516221 G
1 G
1516222 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:1518135 original size:159 final size:159
Alignment explanation
Indices: 1517762--1518137 Score: 527
Period size: 159 Copynumber: 2.4 Consensus size: 159
1517752 TCATTTCATC
* *
1517762 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGATCGGACAGAGGGTTGTGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACAGAGGGTTGTGGCAG
** * * * * *
1517827 CAGGATTGGCAGCACGCTGAGGGGGACCCAGTTGATCCACGGTTTACGCATCCTGCCCCTCTGGC
66 CAGGATCAGCAGCACGCTGAGGGGAACCCAGTCGATCCACAGCTTACGCATCCTGCCCCTCTGGA
*
1517892 CGGTTGAGCACCCACACGCTTGTTCCGTG
131 CGGCTGAGCACCCACACGCTTGTTCCGTG
** * * * *
1517921 GGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGTGGGAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACAGAGGGTTGTGGCAG
* * *
1517986 CAGGATCAGCAGCACGCTGAGGGGAACCCGGTCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGA
66 CAGGATCAGCAGCACGCTGAGGGGAACCCAGTCGATCCACAGCTTACGCATCCTGCCCCTCTGGA
* *
1518051 CGGCTGAGCGCCCACACGCTTGTTTCGTG
131 CGGCTGAGCACCCACACGCTTGTTCCGTG
* * * *
1518080 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTATGATCGGACCGGACCGAGGGTT
1 GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACAGAGGGTT
1518138 ACGGGTGCAC
Statistics
Matches: 188, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
159 188 1.00
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (159 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGATCGGACAGAGGGTTGTGGCAG
CAGGATCAGCAGCACGCTGAGGGGAACCCAGTCGATCCACAGCTTACGCATCCTGCCCCTCTGGA
CGGCTGAGCACCCACACGCTTGTTCCGTG
Found at i:1519625 original size:873 final size:870
Alignment explanation
Indices: 1517921--1531832 Score: 15300
Period size: 871 Copynumber: 15.8 Consensus size: 870
1517911 TTGTTCCGTG
* ** * * * **
1517921 GGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGTGGGAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAG
* * **
1517986 CAGGATCAGCAGCACGCTGAGGGGAACCCGGTCGATCCCC-AGCTTGCGCATCCTGCCCCTCTGG
66 CAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGG
* * ** * * *
1518050 ACGGCTGAGCGCCCACACGCTTGTTTCGTGG-GTTGA----C--T-TAGGCATACGGAGTTCATT
130 CCGGCTGAGCGCCCGCACGCTCATTTTGTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
1518107 CCTAGTCTATGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCTGG
195 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGG
* * * * * *
1518172 GGTCGCATTTTTTTTCGCCCAGGGCACCATTGTCGGCGCATCACCGGAGAACCTGACTGGCGACA
260 TGCCGCATTTTTTTTCGCCC-GGG-------G-C-AC-CATCACCGGAGAACCTGACCGACGGCA
* ** *
1518237 TTGGTGTTCCGACGATTGGGGGGGCCGGGGGGTGTGTACACATGATGTGGGATGGGTGCTGGTAC
314 TTGGGGTTCCGACGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
1518302 TTGGCCCTTATATTGGCCCCTTATCCCTCATCAAAACTTGAGAACTCACAGCCCCTCAAAGAGCA
378 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCA
* *
1518367 TTTGAGATTTTACAGGTTTGCTTCCAATAGCCATTAAAGTGTCT-AAATGGGGACACTTTTTTCA
442 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
** * * * * * * *
1518431 AATCATTACAAAATCTTGTACCCTTCAAGTTTTTAGCTGAACTTCTTTGTGCATGCCCACAAAAA
507 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAAAAAAA
* * *
1518496 TACAACGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTGAAAAAATTTT-AAAAAATCTC
571 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
* *
1518560 GAACCGTTAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
636 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
1518625 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
701 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
* *
1518690 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCGTCCCGCCTCTCT
766 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCT
** * * * * *
1518755 GGTTGGCATAGTGCCCACCCACCCGCCTGCACATTTCGTC
831 GGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* * *
1518795 GGTTGGCTTAGGAATACGGAGTTCATTCCCAATCTAAGATTGGACCAGACTGAGGGTTGCGACAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAG
* * * * *
1518860 CAGGATCAGTAGCACGCTGAGGGGAACCC-AGTCGATCCCCGACTTGCGCATCCTGCCCCTCTCG
66 CAGGATCGGCAGCACGCTGAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCTGCCCCTCTGG
* * *
1518924 ACGGTTGAGCGCCTGCACGCTCATTTTGTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
130 CCGGCTGAGCGCCCGCACGCTCATTTTGTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * ** * * * *
1518989 CCCAGTCTAAGATTGGACCAGATTGAGGGTTACGGGTGCACATACTGGGCTTAGGCATGTGATGG
195 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGG
* * * * * *
1519054 TGCCACATTTGTTTTCGCCCAGGGCACCATCACCGGAGAACCTGACCGGCGGCATTAGAGTTCCG
260 TGCCGCATTTTTTTTCGCCCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * *
1519119 ATGATTGGGGGGGCCGGGGGGGTGTGCGC-CATGATTTGCGATGGGTGCTGGTACTTGGCTCTTA
325 ACGATT-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
1519183 TATTGGCCACCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAA-AGGCATTTGAGATT
388 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGA-GCATTTGAGATT
*
1519247 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCAC
451 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
1519312 AAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAGAAATACAAGGAT
516 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA-AAATACAAGGAT
** * * * * *
1519377 CACGTCTAATAATTTTGGAGCCAAAACTCCTTTTGAAAAACTTTTAAAAAAATCCCGAACCATAA
580 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAA
* * * *
1519442 AAAGCTTCAAAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATGAAACTTGACATGAAGACT
645 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* * *
1519507 TAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATAAAGAT
710 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
* * * *
1519572 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCTGACGC
775 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
* * *
1519637 AATGCCCGCCCGCCTGCCCGCTCGTTTCGTC
840 AGTGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* * * *
1519668 GGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCGGACCAGA-TGAAGGGTTGTGGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTG-AGGGTTGCGACA
* * * * *
1519732 GTC-GGATAGGCAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCACTCTG
65 G-CAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTG
* *
1519796 CCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
129 GCCGGCTGAGCGCCCGCACG--C---TC----ATT---TT--G--T--GGAGTTCATTCCCAGTC
* * *
1519861 TAAGCATACGGACTTCATTCCCAGTCTAAGAT-GAAACCAGACCGAGGGTTGCGGGTGCACATGC
176 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-GACCGGACCGAGGGTTGCGGGTGCACATGC
* *
1519925 TGGGCTCAGGCATGTGCTGGTGCCGTA-TTTTTTTCGCCTGGGGAACAATCGACAGAGCATCACC
240 TGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGG------C-AC----CATCACC
* * * * *
1519989 TGAGAACCTGACCGACGGCATTAGGCTTCCGACGATTGGGGGGGCCCGGGGGTGTGCGCACTTGA
294 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCCGGGGGGTGTGCGCACATGA
*
1520054 TGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
358 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
1520119 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTA
423 TCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * ** *
1520184 AAATGGGGACATTTTTTTCAAATGGTCACGAAATCCTATAGGCTTCAAGTTTTTAGCTGAATTTT
487 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
1520249 TTTGTGCATGCCCACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTCTGA
552 TTTGTGCATG-CCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * * *
1520314 AAAAA-CTTAAGAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
616 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* ** *
1520378 GTCTTGCCATGGAACTTTGCATGAAGGCTTAAGGGACCATTGTATGAATTTACAATCCATAAAAA
681 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1520443 TGGCATTGGCATGGCACAAATATGGAGATGTGCCAAAACCCACCTACCACCCTATCGATCCA---
746 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
*
1520505 ----CG------G--T-T-T--AC-GC--A-T-----------C-CC-GCTCGTTTCGTC
811 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* * * * **
1520532 GGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAACTAAGGGTTGCGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAG
* * * * * *
1520597 CAGGATCGACAGTACGCTGAGGGGGACCCGACCAATCCCC-AGCTTACGCATCTTGCCCCTCTAG
66 CAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGG
*
1520661 CTGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
130 CCGGCTGAGCGCCCGCACGCTCA---------TT---TT--G--T--GGAGTTCATTCCCAGTCT
* ** * * *
1520726 AAGCATACGGAGTTCCTTCCCAGTCTAAGATCGGACTAGATCGAGGGTTGTGGGTGCACATGCTA
177 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTG
* * * * * * * *
1520791 GGCTC-GAGCATGTGCTAGTGCCACA-TTTCTTTCACCCGAGGCACCATCATCGAAGAACCTAAC
242 GGCTCAG-GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCACCGGAGAACCTGAC
* * * * * *
1520854 TGGCAGCATTGGGGTTCCGACGACTAGGGGG-C---GGG-G-G-G-----G-TGTGC-A---CT-
306 CGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * ** *
1520901 CTGGTATTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTATAGAACTCACACCCCCTCA
371 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTA
*
1520966 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
435 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
1521031 TTTTTCAAATGGAT-ACAAAAT-CTG-ACACTTTCGAG-TTTTAGTTGAATTTTTTTATGCATGC
500 TTTTTCAAATGG-TCACAAAATCCTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
1521092 CAACAAAAATACAAGGATCATGTCTTCCAGGATTGGGGCCAAAACTCCTTCTG-AAAAATTTTTA
563 CAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* * *
1521156 AAAAATCCCGAACCTTAAAAACTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATG
627 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
1521221 AAACTTCACATGAAGGCTAAAGGGACCATTGTATGAATTTACAAGCCTTAAAAATGGCATTGGCA
692 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * ** *
1521286 GGGCAAAAATATGAAGATGTGAATAAACCCACCTACCACCTTATCGATCCACGG-TT--G-A---
757 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
1521344 ------------C-GC--A-T-----------C-CC-GCTCGTTTCGTC
822 CGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* * * * * * **
1521364 GATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAG
* * * * * *
1521429 CAGGATCGGTAGCATGCTGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCTTGCCCCTC-CGC
66 CAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGC
1521493 ACGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAAGGATACAGAGTTCATTCCCAGTCT
131 -CGGCTGAGCGCCCGCACGCTCA--T--T---TTG---T---G-----GAGTTCATTCCCAGTCT
* ** * * * *
1521558 AAGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCAGATCGAGGGTTGTGGGTACACATGCTG
177 AAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTG
* *
1521623 GGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTTTGCCCAGGGCACCATCGTAGGAGCGTTTCCG
242 GGCTCAGGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCATC-----A------CCG
* * * *
1521688 GAGAACCTGACTGACGGCATTAGGGTTCCGGCGGTT-GGGGGCCGGGGGGTGTGCGCACATGATG
295 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATG
* * *
1521752 TGCGATGGGTGCTGGTACTTGTCCCTTATATTGG-CCCCTATCCCTCATCAAACCACGAGAACTG
360 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1521816 ACACCCCCTTAAAGAGCATTTGAGATATTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
425 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1521881 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGATTTTAGCTGAATTTTTT
489 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
1521946 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACAAGGATCA
554 TGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGG-C-------CAA--A--A
* *
1522011 TGTCTGCCAGGATTGGGGCCAAAACTCTTTCTGAAAAAATTTTAAAAAAATCTCGAATCGTAAAA
606 -------C-----T----------C-C-TTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAA
* * * *
1522076 GGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCTCATGAAGGCTAA
647 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
* *
1522141 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAAAAATATGAAGATGT
712 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
* * *
1522206 GCCTAAACCCACTTACCACCCTATCGATCCACAGCTTACGCATCCCGCCTCTCTGGCCGGCGTAG
777 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* * * * *
1522271 TGCCCGCCTGCTCGCCCGCTCATTTTGTC
842 TGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* * *
1522300 GGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCGAACCA-AATCGAGGATTGCGACA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGACA
* * * * * *
1522363 GTAGGATCGACAGCAC-ATAGAGGGGGA-CCTAGCCAATCCCC-AGGTTGCGCATCCTGCCCCTC
65 GCAGGATCGGCAGCACGCT-GAGGGGGACCCGA-CCGATCCCCGA-CTTGCGCATCCTGCCCCTC
** * * *
1522425 CAGTCGGCTGAGCGCCTGCACGCTTGTTTCGTGGGTTGACTTAAGGATACGGAGTTCATTCCCAG
127 TGGCCGGCTGAGCGCCCGCACGC-----TC----ATT---TT---G-T--GGAGTTCATTCCCAG
* * *
1522490 TCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCGGGTGCACATG
174 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATG
* *
1522555 CTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTTTTTGGCCCGGGGCACCATCGCCGGAGCATTG
239 CTGGGCTCAGGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCAT---C--A-C----
* * * *
1522620 CAGGAGAACCTGACCGGCGGCATTAGGGTTCCGGCGGTT-GGGGGCCGGGGGGTGTGCGCACATG
293 C-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATG
*
1522684 ATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAA
357 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
1522748 CTGACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGAAGCCATTAAGGTGTCT
422 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
1522813 CAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTGGCTGAATTT
486 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* *
1522878 TTTTGTTCCTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATACAAGGA
551 TTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTT---G------------GG-
* *
1522943 TCACATCTGCCAGGATTGGGGTCAAAACTCCTTCTGAAAAAATTTTAAAAATATCCCAAACCGTA
599 --------G-C-----------CAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTA
1523008 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
644 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
*
1523073 TTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGA
709 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGA
* ** * * *
1523138 TGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTATGCATCCCGTCTCTTTGGCTGGCG
774 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCG
** * *
1523203 TAGTAACCGCCCGCCCGTCTGCTCGTTTCATC
839 TAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* * * ** * *
1523235 GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGAACCAGACCAAGGATTG-TAGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGA-CA
* * * * * * *
1523299 GTAGGATCGACAGCATGCTGAGGGGGACCCGACCGATCCCTGGCTTACGGATCCTGCCCCTCTGG
65 GCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGG
* * * *
1523364 CCGGCTGAGC-ACCGTACGCTTGTTTCATGGGTTGACTTAGGCATCAGAGTTCATTCCTAGTCTA
130 CCGGCTGAGCGCCCGCACGC-----TCA----TT---TT--G--T-GGAGTTCATTCCCAGTCTA
** *
1523428 AGCATACAAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGGTGCACATGCTGG
178 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGG
* * * *
1523493 GCTCGGGCATGTGCTGGTGTCGCA-TTTTTTTCACCTGGGGCACCATCGCCGGGGCATCGTCGGA
243 GCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCAT--------CA-C--CGGA
* *
1523557 GAACCTGACCAACGGCATTGGGGTTCCTG-CGATTGGGGCGGGCC-GGGGGTGTTCGCACATGAT
297 GAACCTGACCGACGGCATTGGGGTTCC-GACGATT-GGG-GGGCCGGGGGGTGTGCGCACATGAT
* *
1523620 GTGCGATGGGTGGTGGTACTTGGCCCTTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
359 GTGCGATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
1523685 TCACACCCCTTAAAGAGCATTTGAGATTTTACAGG-TTGCTGCCAGTAGCCATTAAAGTGTCTAA
423 TCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
1523749 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAA-TTTT
488 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
1523813 TTGTGCATGCCACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
553 TTGTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* *
1523878 AAA-TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGT
618 AAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
1523942 CTTGCCATGAAACTTCACATGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAAAATG
683 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1524007 GCATTGGCATGGCAGAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATTGATCCACGACT
748 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
1524072 TGCGCATCCCGCCACTCTAGCCGGCGTAGTGCCTGCCCGCCCGTCC-GCTCGTTTCGTC
813 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCTGCTCGTTTCGTC
*
1524130 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAG
* **
1524195 CAGGATCGGCAGCACACTGAGGGGGACCCGGTCGATCCCC-AGCTTGCGCATCCTGCCCCTCTGG
66 CAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGG
* * * * * *
1524259 CCGGCTGAGCACCCGCACGCTCGTTTCGTGG-G---A---CGA-TTTAGGCATACGGAGTTCATT
130 CCGGCTGAGCGCCCGCACGCTCATTTTGTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
1524316 CCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGGTGTAAATGCTGGGCTCAGGCATGTACTGG
195 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGG
* * *
1524381 TGCCAC-TTTTTTTTCGCCCAGGGCACCATCGCAGAGCATCATCGGAGAACCTGACCGGCGGCAT
260 TGCCGCATTTTTTTTCGCCCGGGGCACCAT-------CA-C--CGGAGAACCTGACCGACGGCAT
* * *
1524445 TGGGGTTTCGACGATTGGAGGGGCCGAGGGGGGTGTTCGCACATGATGTGTGATGGGTGCTGGTA
315 TGGGGTTCCGACGATTGG-GGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * *
1524510 CTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAAGTAACACCCCCTTAAAGAGC
377 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGC
* * *
1524575 ATTTGATATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTC
441 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
1524640 AAATGGTCACAAAATCCTGTGCACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAA
506 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-AAAA
* * *
1524705 ATACAAGGATCACGTATACCTAGTTT-GGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAATCT
570 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCC
1524768 CGAACCGTAAAAAGTTTTCAAAAATTCGTG-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
635 CGAACCGTAAAAAG-TTTCAAAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
1524832 CACATGAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
698 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
1524896 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
763 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
* * *
1524961 TCTGGCTGGCGTAATGCCCGCCCGCCCGCCCGCTCGTTTCGTC
828 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* ** *
1525004 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACCAAGGGTTGCAACA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACTGAGGGTTGCGACA
* * * * * * * * * * *
1525068 GCAAGATCGGTAGCATGCTGAGGGGGACCTGATCGATGCCTGGCATGCGCATGCTGCCCCACTGG
65 GCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGG
* * * * * * * * *
1525133 CCGACTGAGCTCCGGCACACTCGTTTCGTGG-GTTGA----C--TC-AGGCATACAGAGTTCATT
130 CCGGCTGAGCGCCCGCACGCTCATTTTGTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
1525190 CCCAGTCTAAGATTGGATCGGACTGAGGGTTGCAGGTGCACATGCTGGGCTC-GAGCATGTGCTG
195 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAG-GCATGTGCTG
* * * * * *
1525254 GTGCCGTATTTTTTTTTGCCCGGGCCACCATCGCCGGAGCATTGCCAGAGTACCTGACTGACGGT
259 GTGCCGCATTTTTTTTCGCCCGGGGCACCATCACC---G----G--AGA--ACCTGACCGACGGC
* * *
1525319 ATTGGGGTTCCGACGATTGGGTGGGCCAGGGGG-GTGCGCACGTGATGTGCGATGGTTGCTGGTA
313 ATTGGGGTTCCGACGATTGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
1525383 CTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCA
377 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCA
* * * ** *
1525448 TTTGGGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATATGTACAC-TTTTTCA
442 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * *
1525512 AATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAACTTTTTTGTGCATGCCCACAAAAA
507 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAAAAAAA
* * *
1525577 TACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTCAGAAAAA-TTTAAAAAAATCC
571 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA-AAAAATTTTAAAAAAATCC
* *
1525641 TGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
635 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
** ** * *
1525706 CATGAAGTTTTAAGGGACTGTTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGGTAGAA
700 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* *
1525771 ATATGAAGATGTGCCTAAACCCACCTACCACCC-ATCGATCCATGGCTTGCACAT-CCGCCTCTC
765 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
** *
1525834 TGGCCAGG-GTAGACCCCGCCGGCCCG-CTCGCTCGTTTCGTC
830 TGGCC-GGCGTAGTGCCCGCCCGCCCGCCT-GCTCGTTTCGTC
* ** *
1525875 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACCAAGGGTTGCAACA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACTGAGGGTTGCGACA
* * * * * * * * * * *
1525939 GCAAGATCGGTAGCATGCTGAGGGGGACCTGATCGATGCCTGGCATGCGCATGCTGCCCCACTGG
65 GCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGG
* * * * * * * * *
1526004 CCGACTGAGCTCCGGCACACTCGTTTCGTGG-GTTGA----C--TC-AGGCATACAGAGTTCATT
130 CCGGCTGAGCGCCCGCACGCTCATTTTGTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
1526061 CCCAGTCTAAGATTGGACCGGACTGAGGGTTGCAGGTGCACATGCTGGGCTC-GAGCATGTGCTG
195 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAG-GCATGTGCTG
* * * * * *
1526125 GTGCCGTATTTTTTTTTGCCCGGGCCACCATCGCCGGAGCATTGCCAGAGTACCTGACTGACGGT
259 GTGCCGCATTTTTTTTCGCCCGGGGCACCATCACC---G----G--AGA--ACCTGACCGACGGC
* * *
1526190 ATTGGGGTTCCGACGATTGGGTGGGCCAGGGGG-GTGCGCACGTGATGTGCGATGGGTGCTAGTA
313 ATTGGGGTTCCGACGATTGGG-GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
1526254 CTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTAAAGAGCA
377 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCA
* * * ** *
1526319 TTTGGGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTAAAATATGTACAC-TTTTTCA
442 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * * * *
1526383 AATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTTAACTTTTTTGTGCATGCCCACAAAAA
507 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAAAAAAA
* *
1526448 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCTCAGAAAAA-TTTAAAAAAATCC
571 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA-AAAAATTTTAAAAAAATCC
* * *
1526512 TGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCA
635 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
** ** * *
1526577 CATGAAGTTTTAAGGGACTGTTGTATGAATTTACAAGCCATAAAAGTGGCATTGGCATGGTAGAA
700 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* *
1526642 ATATGAAGATGTGCCTAAACCCACCTACCACCC-ATCGATCCATGGCTTGCACAT-CCGCCTCTC
765 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* ** * *
1526705 TGGCCAGCGTAGACCCCGTCGGCCCG-CTCGCTCGTTTCGTC
830 TGGCCGGCGTAGTGCCCGCCCGCCCGCCT-GCTCGTTTCGTC
* * *
1526746 GGTTGGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATTGGACCGGACTGAGGGTTGC-AGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGA-CA
* * *
1526810 GCAGGATCGGTAGCACGCTGAGGGGGACCCAACCGATCCCCGACTTGCGCATTCTGCCCCTCTGG
65 GCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGG
* * * *
1526875 CCGGCTGAGCGCCCGTACGCTCATTTCGTGG-GTTGA----C--T-TAGGCATACGGAGTTCATT
130 CCGGCTGAGCGCCCGCACGCTCATTTTGTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* *
1526932 CCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCAGGTGCTGG
195 CCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGG
* * * * * * *
1526997 TGTCGTATTTTTTTTCACCCGAGGCACCATCGTCGGAGCATTGTCGGAGAACTTGACCGGCAGCA
260 TGCCGCATTTTTTTTCGCCCGGGGCACCA---TC--A-C-----CGGAGAACCTGACCGACGGCA
* * *
1527062 TTGGGGTTCCGGCGATTGGGGGGGCGAGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTAC
314 TTGGGGTTCCGACGATTGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
1527127 TTGGCCCTTATATTGGCCCCCTATCCCTCATCCAAACCTCGAAGAACTCACACCCCCTTAAAGAG
378 TTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCG-AGAACTCACA-CCCCTTAAAGAG
1527192 CATTTGAGATTTTACAGGTTATGTCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGGACA-TTT
440 CATTTGAGATTTTACAGGTT-TG-CTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTT
1527256 TTTCAAATGGTCAC-AAATCCTGGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTTGCATGCCA
502 TTTCAAATGGTCACAAAATCCT-GTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCA
* *
1527319 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTAAAAAA
565 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
* * *
1527384 AATCCTGAAACGTAAAAAGTTTC-AAAATCGTAAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
630 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
1527448 CTTCACA-GAAGGCTTAAGGGGACCATT-TATGAATTTACAAGCCATAAAAATGGCATTGGCATG
695 CTTCACATGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
1527511 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
759 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
1527576 CCTCTCTGGCCGGTGCAGTGCCCGCCCG--C-CC-GCTCGTTTCGTC
824 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* * * * * * **
1527619 GGTTGGCTTAGGCATACGAATTTCATTCCTAGTCTAAGATTGGACCAGATTGAGGGTTACGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAG
* * * * *
1527684 CAGGATCGGCAGCACGCAGAAGGGGACCTGACCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGC
66 CAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGC
* * ** * * * * *
1527749 CGGTTGAGCGCCCGTACATTCATTTCGTGG-GTTGA----C--T-TAGGCATATGAAGTTCATTC
131 CGGCTGAGCGCCCGCACGCTCATTTTGTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
1527806 CCAGTCTAAGATCGGACTGGACCGAGGGTTGCAGGTGCACATGTTGGGCTCTA-GCATGTGCTGG
196 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTC-AGGCATGTGCTGG
* ** * *
1527870 TACCGCATTTTTTTT-GCCCGGGGCACCATCGTCGAAGAACATGACC-A-GTAGCATTGGGGTTC
260 TGCCGCATTTTTTTTCGCCCGGGGCACCATCACCGGAGAACCTGACCGACG--GCATTGGGGTTC
* * *
1527932 CGACGATT--GGGGACGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCC-TA
323 CGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
1527994 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGATTTT
388 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTT
* *
1528059 ACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTAAAATGGGGTCACTTTTTTCAAATGGTCACAA
453 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
1528123 AATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
518 AATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCA
*
1528188 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCCCGAACCGTAAAA
582 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAA
** * * * *
1528253 AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTTCCATGTAACTTCACATGAAGGCCTA
647 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
*
1528318 AGGGACCATTGGATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
712 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
* * * * *
1528383 GCCTAAACCCACCTACCAACTTATCGATCCACGGCTTGCGCATCTCGCATCTCTGGCCGACGTAG
777 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* *
1528448 T----GCCCG--C-CC-GCTCATTTCATC
842 TGCCCGCCCGCCCGCCTGCTCGTTTCGTC
* * * *** * * *
1528469 GGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGAAATGGACCGAGGGTTGTGGCAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAG
* * * *
1528534 CAAGATTGGCAGCACACTGAGGGGGACCCGACCGATCCCCGTCTTGCGCATCCTGCCCCTCTGGC
66 CAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGC
*
1528599 CGGCTGAGCGCCCGCACGCTTGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTA
131 CGGCTGAGCGCCCGCACGC-----TC-----AT---TT-TG--T--GGAGTTCATTCCCAGTCTA
* * * * * ** * * *
1528664 AGCATACAGAATTCAGTCCCAATCTAAGATCAGACCTAATCGAGGGTTACGGGTGCACATGTTGG
178 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGG
* * * * *
1528729 GCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCTGGGGCACCATCGCTGGAGAACCTGACCG
243 GCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCACCGGAGAACCTGACCG
* * *
1528794 ACGGCATTGGGGTTCC-AGCGATTGAGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGC
308 ACGGCATTGGGGTTCCGA-CGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
** *
1528858 TGGTACTTGGCCCTTATATTGGCCCCCTATATCTCATCAAACCTTGAGAACTCACATCCCCTTAA
372 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAA
* * * *
1528923 AGAGTATTTGAGATTTTACAGGTTTGCTGCTAGAAGCCATTAAAGTGTCCGAAATGGGGACACTT
436 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
1528988 TTTTCAAATGGTCACAAAATCCTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
501 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
1529053 CAAAAATACAAAGG-TCATGTCTACCAGGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTCAAAA
566 -AAAAATAC-AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * *
1529117 AAATCTCGAACCGTAAAAACTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTTGCCATGAA
629 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
1529182 ACTTCACATGAGGGCTTAAGGGACCATTGTATGAATTTACAAACCGTAAAAAAGGCATTGGCATG
694 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
1529247 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCG
759 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*** ** *
1529312 CCTCTCTGGTTAGCGTAACGCCCGCCCGCTGCC-CC-GATCGTTTCGTC
824 CCTCTCTGGCCGGCGTAGTGCCCGCCCGC--CCGCCTGCTCGTTTCGTC
* * * * * * *
1529359 AGTTGGCTTAGGCATACAGAGTTTATTCTCAGTCTAAGATTGGACCAGA-TCGAGGGTTGTGGCA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGACA
* * * * *
1529423 CCAAGATCGGCAGCATG-TAGAGGGGGACCCGACCGATCCCCAACTTGCGTATCCTGCCCCTCTG
65 GCAGGATCGGCAGCACGCT-GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTG
* * *
1529487 GTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCTAGTC
129 GCCGGCTGAGCGCCCGCACGCTC-ATT--T----TG---T--G------GAGTTCATTCCCAGTC
* * * * *
1529552 TAAGCATACAGAGTTCAATCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCAGGTGCACATGCT
176 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCT
* *
1529617 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGTCCGGAGAACCTG
241 GGGCTCAGGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCATC-ACCGGAGAACCTG
1529682 ACCGACGGCATT-GGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
304 ACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
1529746 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTT
369 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTT
* *
1529811 AAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACAC
434 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
1529876 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
499 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
1529941 AAAAAAATACAAGG-TCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAA
564 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
*
1530005 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
629 AAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
1530070 ACTTCACATGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
694 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
1530135 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
759 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
1530200 TCTCTTTGGTCAGCATAGTGCCCGCCCG-CTGCCTCGCTCGTTTCGTC
824 CCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCT-GCTCGTTTCGTC
* * * * * * **
1530247 AGTTGGCTTAGGCATGCGGAGTTTATTCCCAGTCTAAGATTGGACCAGA-TCAAGGGTTCCGGTA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGACA
* * * *
1530311 GTAGGATCGACAGCACG-TAGAGGGGGACCCAACCGATCCCCGACTTGCGGATCCTGCCCCTCTG
65 GCAGGATCGGCAGCACGCT-GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTG
*
1530375 GCCGGCTAAGCGCCCGCACGCTCATTTCATGGTATGACTTAGGCATACGGAGTTCATTCCCAGTC
129 GCCGGCTGAGCGCCCGCACG--C---TCA---T-T---TT--G--T--GGAGTTCATTCCCAGTC
* * ** *
1530440 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTAACTGAGGGTTGCGGGTGCACATGCT
176 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCT
*
1530505 GGGCTC-GAGCATGTGCTGGTGCCTCATTTTTTTTCGCCCGGGGCACCATCACCGGAGAACCTGA
241 GGGCTCAG-GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCACCGGAGAACCTGA
* * * *
1530569 CCGGCGGCATTGGGGTTCTGGCGATTGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGG
305 CCGACGGCATTGGGGTTCCGACGATTGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGG
1530634 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTT
369 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-T
*
1530699 TAAAGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACA
433 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
1530762 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
498 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
1530827 CACAAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAAAAAATTTTAAA
563 CAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* *
1530891 AAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
628 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
1530956 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
693 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
1531021 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
758 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
1531086 GCCTCTTTGGCCGGTGTAGTGCCCTCCCGCCTG-CTCGCTCATTTCGTC
823 GCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCT-GCTCGTTTCGTC
* * * *
1531134 GGTTGGCTTAGGCATATGGAGTGCATTCCCAGTCTAAGATCAGACCAAACTGAGGG-T-------
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAG
* * * * * * * *
1531191 -A-G--CGGCAGCACACTGAGGGGGACCTGGCCCATCCTCGGCTTGTGCATCCTGCCCCTTTGGC
66 CAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGC
* * ** * * *
1531252 CGGCTGAGCACCCGCACGCTCGTTTCATGG-GTTGA----C--T-TAGGCATACAGAGTTCATTC
131 CGGCTGAGCGCCCGCACGCTCATTTTGTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
*
1531309 TCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTC-GAGCATGTGCTGG
196 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAG-GCATGTGCTGG
* * * * *
1531373 TGCCACATTTTTTTTCACCCGGGGCACCATTGTTGGAGCATCGTCAGAGAACCTGATCGACGGTA
260 TGCCGCATTTTTTTTCGCCCGGGGCACCA----T----CA-C--CGGAGAACCTGACCGACGGCA
* * *
1531438 TTGGGGTTTCGACGATTGGGGGGCTGAGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTAC
314 TTGGGGTTCCGACGATTGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * *
1531503 TTGGCCCTTATATTGGCCCACTATCTCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGAGCA
378 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC-CCTTAAAGAGCA
*
1531568 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
442 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
1531633 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
507 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AAAAAAA
* * *
1531698 TACAAGGATCACGTCTACCAAGTTTGGTGCCCAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC
571 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
* * * * * *
1531763 AAACCATAAAAACTTTCAAAAATCATGAAAAATAAAAAACGACTCGTCTTGCCATGAAACTTCAC
636 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
1531828 ATGAA
701 ATGAA
1531833 ACTTCGCAGA
Statistics
Matches: 11479, Mismatches: 1096, Indels: 936
0.85 0.08 0.07
Matches are distributed among these distances:
825 2 0.00
826 2 0.00
827 6 0.00
831 10 0.00
832 483 0.04
833 8 0.00
834 159 0.01
835 2 0.00
836 1 0.00
838 1 0.00
839 5 0.00
840 1 0.00
844 5 0.00
845 32 0.00
846 1 0.00
847 1 0.00
848 6 0.00
849 106 0.01
850 150 0.01
851 63 0.01
852 120 0.01
853 90 0.01
854 153 0.01
855 12 0.00
856 13 0.00
857 34 0.00
858 45 0.00
859 11 0.00
860 143 0.01
861 189 0.02
862 104 0.01
863 97 0.01
864 357 0.03
865 5 0.00
866 2 0.00
867 2 0.00
868 4 0.00
869 14 0.00
870 56 0.00
871 1575 0.14
872 436 0.04
873 868 0.08
874 585 0.05
875 296 0.03
876 201 0.02
877 192 0.02
878 54 0.00
879 53 0.00
880 41 0.00
881 53 0.00
882 419 0.04
883 7 0.00
884 6 0.00
885 6 0.00
886 31 0.00
887 438 0.04
888 652 0.06
889 26 0.00
890 387 0.03
891 224 0.02
892 24 0.00
893 5 0.00
894 4 0.00
895 345 0.03
896 31 0.00
897 4 0.00
898 1 0.00
899 5 0.00
900 362 0.03
901 283 0.02
902 10 0.00
903 1 0.00
904 1 0.00
907 1 0.00
908 1 0.00
917 2 0.00
919 1 0.00
920 2 0.00
922 1 0.00
923 1 0.00
929 1 0.00
930 1 0.00
932 79 0.01
933 16 0.00
934 236 0.02
935 831 0.07
936 152 0.01
937 8 0.00
938 2 0.00
940 8 0.00
941 1 0.00
942 1 0.00
943 1 0.00
947 1 0.00
950 2 0.00
952 1 0.00
959 4 0.00
961 1 0.00
963 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGACAG
CAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGC
CGGCTGAGCGCCCGCACGCTCATTTTGTGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGT
GCCGCATTTTTTTTCGCCCGGGGCACCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
CGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAATACAAGGATCACGTC
TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTT
TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC
CGCCCGCCCGCCTGCTCGTTTCGTC
Found at i:1519877 original size:26 final size:26
Alignment explanation
Indices: 1519838--1519890 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1519828 GTTGACTTAG
*
1519838 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
1519864 GCATACGGACTTCATTCCCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
1519890 G
1 G
1519891 ATGAAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:1520738 original size:26 final size:26
Alignment explanation
Indices: 1520702--1520754 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1520692 GTTGACTTAG
1520702 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1520728 GCATACGGAGTTCCTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1520754 G
1 G
1520755 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1521570 original size:26 final size:26
Alignment explanation
Indices: 1521531--1521586 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
1521521 TGGGTTGACT
*
1521531 TAAGGATACAGAGTTCATTCCCAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
* *
1521557 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACAGAGTTCATTCCCAGTC
1521583 TAAG
1 TAAG
1521587 ATCAAACCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTCCCAGTC
Found at i:1522003 original size:36 final size:36
Alignment explanation
Indices: 1521958--1522034 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
1521948 TGCATGCCAA
*
1521958 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
1 CAAAAATACAAGGATCACGTCTACCAAGATTGGGGC
* * *
1521994 CAAAAATACAAGGATCATGTCTGCCAGGATTGGGGC
1 CAAAAATACAAGGATCACGTCTACCAAGATTGGGGC
1522030 CAAAA
1 CAAAA
1522035 CTCTTTCTGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (36 bp):
CAAAAATACAAGGATCACGTCTACCAAGATTGGGGC
Found at i:1522502 original size:26 final size:26
Alignment explanation
Indices: 1522466--1522521 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
1522456 TGGGTTGACT
*
1522466 TAAGGATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
1522492 TAAGCATACGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
1522518 TAAG
1 TAAG
1522522 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:1522938 original size:36 final size:36
Alignment explanation
Indices: 1522893--1522969 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
1522883 TTCCTGCCAA
* *
1522893 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
1 CAAAAATACAAGGATCACATCTACCAAGATTGGGGC
* * *
1522929 CAAAAATACAAGGATCACATCTGCCAGGATTGGGGT
1 CAAAAATACAAGGATCACATCTACCAAGATTGGGGC
1522965 CAAAA
1 CAAAA
1522970 CTCCTTCTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.18
Consensus pattern (36 bp):
CAAAAATACAAGGATCACATCTACCAAGATTGGGGC
Found at i:1528678 original size:26 final size:26
Alignment explanation
Indices: 1528639--1528691 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1528629 GATGACTTAG
* * * *
1528639 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCAGTCCCAATCTAA
1528665 GCATACAGAATTCAGTCCCAATCTAA
1 GCATACAGAATTCAGTCCCAATCTAA
1528691 G
1 G
1528692 ATCAGACCTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCAGTCCCAATCTAA
Found at i:1529565 original size:26 final size:26
Alignment explanation
Indices: 1529529--1529581 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1529519 GATGACTTAG
* *
1529529 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
1529555 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
1529581 G
1 G
1529582 ATCAGACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:1530333 original size:888 final size:888
Alignment explanation
Indices: 1526916--1531832 Score: 6685
Period size: 888 Copynumber: 5.6 Consensus size: 888
1526906 GTTGACTTAG
* ** *
1526916 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
1526981 CTC-AGGCAGGTGCTGGTGTCGTATTTTTTTTCACCCGAGGCACCATCGTCGGAGCATTGTCGGA
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGT-----C-----CGGA
* * * * *
1527045 GAACTTGACCGGCAGCATTGGGGTTCCGGCGATTGGGGGGGCGAGGGGGTGTGCGCACATGATGT
120 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCG-GGGGGTGTGCGCACATGATGT
*
1527110 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAAACCTCGAAGAACT
184 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCG-AGAACT
1527175 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTATGTCTGCCAGTAGCCATTAAAGTGTCT
247 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTT-TG-CTGCCAGTAGCCATTAAAGTGTCT
1527240 GAAATGGGGGACA-TTTTTTCAAATGGTCAC-AAATCCTGGTACACTTCGAGTTTTTAGCTGAA-
309 GAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCCT-GTACACTTCGAGTTTTTAGCTGAAT
*
1527302 TTTTTTGTTGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
372 TTTTTTG-TGCATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
1527367 TGAAAAAATTTAAAAAAAATCCTGAAACGTAAAAAGTTTC-AAAATCGTAAAAAATAGAAAACGA
436 TGAAAAAATTTAAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
1527431 GTCGTCTTGCCATGAAACTTCACA-GAAGGCTTAAGGGGACCATT-TATGAATTTACAAGCCATA
501 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATA
1527494 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
565 AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
1527559 ACGGCTTGCGCATCCCGCCTCTCTGGCCGGTGCAGTGCCCG-CC-C-GCCCGCTCGTTTCGTCGG
630 ACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCCGCTGCCCGCTCGTTTCGTCGG
* * * *
1527621 TTGGCTTAGGCATAC-GAATTTCATTCCTAGTCTAAGATTGGACCAGATTGAGGGTTACGGTAGC
695 TTGGCTTAGGCATACGGAGTTT-ATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGC
* * * * *
1527685 AGGATCGGCAGCACGCAGAAGGGGACCTGACCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCC
759 AGGATCGGCAGCACGTAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
* * ** * *
1527750 GGTTGAGCGCCCGTACATTCATTTCGTGGGTTGAC-T-----T--AG-G--CA----TA---T--
824 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
* * *
1527795 G-----A-AGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAGGGTTGCAGGTGCACATGTTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCT-GACCGAGGGTTGCGGGTGCACATGCTGG
* * * *
1527853 GCTCTAGCATGTGCTGGTACCGCATTTTTTTT-GCCCGGGGCACCATCGT-CGAAGAACATGACC
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCCGGAGAACCTGACC
* * *
1527916 -A-GTAGCATTGGGGTTCCGACGATT--GGGGACGGGGGGTGTGCACACATGATGTGTGATGGGT
130 GACG--GCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
1527977 GCTGGTACTTGGCCC-TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTA
193 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTA
* *
1528041 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT-AAGTGTCTAAAATGGGGTCACT
258 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
1528105 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
323 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-
1528170 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAA
387 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAA
** * * * *
1528235 AAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTTCCATGTA
452 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
1528300 ACTTCACATGAAGGCCTAAGGGACCATTGGATGAATTTACAAGCCATAAAAATGGCATTGGCATG
517 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * *
1528365 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACTTATCGATCCACGGCTTGCGCATCTCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
1528430 CATCTCTGGCC-GACGTAGT----G-CC-C-GCCCGCTCATTTCATCGGTTAGCTTAGGCATACG
647 CCTCTCTGGCCAG-CGTAGTGCCCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * *** * * * * * *
1528487 GAGTTCATTCCCAGTCTAAGATTGAAATGGACCGAGGGTTGTGGCAGCAAGATTGGCAGCACACT
711 GAGTTTATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCAC-GT
*
1528552 -GAGGGGGACCCGACCGATCCCCGTCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
775 AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * *
1528616 GCTTGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 GCTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
* * * * * * *
1528665 GCATACAGAATTCAGTCCCAATCTAAGATCAGACCTAATCGAGGGTTACGGGTGCACATGTTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
1528730 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCTGGGGCACCATCG-CTGGAGAACCTGACCG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCCGGAGAACCTGACCG
* * *
1528794 ACGGCATTGGGGTTCC-AGCGATTGAGGGGCCAGGGGGTGTGCGCACATGATGTGTGATGGGTGC
131 ACGGCATTGGGGTTCCGA-CGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
** *
1528858 TGGTACTTGGCCCTTATATTGGCCCCCTATATCTCATCAAACCTTGAGAACTCACATCCCCTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAA
* * * *
1528923 AGAGTATTTGAGATTTTACAGGTTTGCTGCTAGAAGCCATTAAAGTGTCCGAAATGGGGACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
1528988 TTTTCAAATGGTCACAAAATCCTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
324 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
1529053 CAAAAATACAAAGG-TCATGTCTACCAGGTTTGGGGCCAAAACTCTTTCTGAAAAAATTTCAAAA
389 -AAAAATAC-AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAA
* * * *
1529117 AAATCTCGAACCGTAAAAACTTTCAAAAATCGTGAAAAATAGAGAACGAGTCGTCTTGCCATGAA
452 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
1529182 ACTTCACATGAGGGCTTAAGGGACCATTGTATGAATTTACAAACCGTAAAAAAGGCATTGGCATG
517 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
1529247 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCCCG
582 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
** ** * * *
1529312 CCTCTCTGGTTAGCGTAACGCCCGCCCGCTGCCCCGATCGTTTCGTCAGTTGGCTTAGGCATACA
647 CCTCTCTGGCCAGCGTAGTGCCCGCCCGCTG-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * * * *
1529377 GAGTTTATTCTCAGTCTAAGATTGGACCAGATCGAGGGTTGTGGCACCAAGATCGGCAGCATGTA
711 GAGTTTATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTA
* * *
1529442 GAGGGGGACCCGACCGATCCCCAACTTGCGTATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACG
776 GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACG
1529507 CTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
841 CTCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
* *
1529555 GCATACAGAGTTCAATCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCAGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGGTGCACATGCTGGG
*
1529620 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCCCGGGGCACCATCGTCCGGAGAACCTGACC
66 CTCGAGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCATCGTCCGGAGAACCTGACC
1529685 GACGGCATT-GGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
130 GACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
1529749 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTAAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAA
* *
1529814 GAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTT
260 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
1529879 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
325 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
*
1529944 AAAATACAAGG-TCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAA
390 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAA
1530008 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
455 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
1530073 TCACATGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
520 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
*
1530138 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
585 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* * * * *
1530203 CTTTGGTCAGCATAGTGCCCGCCCGCTGCCTCGCTCGTTTCGTCAGTTGGCTTAGGCATGCGGAG
650 CTCTGGCCAGCGTAGTGCCCGCCCGCTGCC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * * *
1530268 TTTATTCCCAGTCTAAGATTGGACCAGATCAAGGGTTCCGGTAGTAGGATCGACAGCACGTAGAG
714 TTTATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAG
* * *
1530333 GGGGACCCAACCGATCCCCGACTTGCGGATCCTGCCCCTCTGGCCGGCTAAGCGCCCGCACGCTC
779 GGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * * *
1530398 ATTTCATGGTATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 GTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
* *
1530443 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTAACTGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGGTGCACATGCTGGG
* *
1530508 CTCGAGCATGTGCTGGTGCCTCATTTTTTTTCGCCCGGGGCACCATC-ACCGGAGAACCTGACCG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCCGGAGAACCTGACCG
* * * *
1530572 GCGGCATTGGGGTTCTGGCGATTGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
131 ACGGCATTGGGGTTCCGACGATTGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
1530637 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAA
195 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAA
*
1530702 AGAGCATTTGAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACACTT
259 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
*
1530765 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAC
324 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
1530830 AAAAATACAAGGATCATGTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
389 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAA
*
1530894 ATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
454 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
1530959 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
519 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
1531024 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
584 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* * * * * * *
1531089 TCTTTGGCCGGTGTAGTGCCCTCCCGCCTGCTCGCTCATTTCGTCGGTTGGCTTAGGCATATGGA
649 TCTCTGGCCAGCGTAGTGCCCGCCCG-CTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
** ** * *
1531154 GTGCATTCCCAGTCTAAGATCAGACCA-AACTGA-----G-GGTAGC-GG--CAGCA-CAC-T-G
713 GTTTATTCCCAGTCTAAGATTGGACCAGATC-GAGGGTTGCGGTAGCAGGATCGGCAGCACGTAG
* * * * * * * *
1531206 AGGGGGACCTGGCCCATCCTCGGCTTGTGCATCCTGCCCCTTTGGCCGGCTGAGCACCCGCACGC
777 AGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
1531271 TCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CTCAGTCTAA
842 TCGTTTCGTGGGATGACTTAGGCATACAGAGTTCATTCCT-AGTCTAA
1531318 G-AT-C-G-G---------A--C------C-G----GACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
1531357 CTCGAGCATGTGCTGGTGCCACATTTTTTTTCACCCGGGGCACCATTGTTGGAGCATCGTCAGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCG-T----C--CG---GAG
* * * *
1531422 AACCTGATCGACGGTATTGGGGTTTCGACGATTGGGGGGCTGAGGGGGTGTGCGCACATGATGTG
121 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* * * *
1531487 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCACTATCTCTCATCAAACCTTGAGAACTCAC
185 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1531552 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAT
250 ACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1531617 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
314 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
1531682 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCCAAACTCCTTCTGAAAAA
379 TGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * * * * *
1531747 ATTTTAAAAAAATCTCAAACCATAAAAACTTTCAAAAATCATGAAAAATAAAAAACGACTCGTCT
443 ATTTAAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
1531812 TGCCATGAAACTTCACATGAA
508 TGCCATGAAACTTCACATGAA
1531833 ACTTCGCAGA
Statistics
Matches: 3647, Mismatches: 300, Indels: 197
0.88 0.07 0.05
Matches are distributed among these distances:
849 71 0.02
850 156 0.04
851 66 0.02
852 114 0.03
853 57 0.02
854 153 0.04
855 11 0.00
856 9 0.00
857 25 0.01
858 43 0.01
859 9 0.00
860 140 0.04
861 74 0.02
862 73 0.02
863 30 0.01
864 100 0.03
865 1 0.00
868 1 0.00
870 1 0.00
871 1 0.00
872 17 0.00
873 77 0.02
874 4 0.00
875 97 0.03
876 76 0.02
877 49 0.01
878 4 0.00
879 51 0.01
880 40 0.01
881 53 0.01
882 324 0.09
883 5 0.00
886 26 0.01
887 430 0.12
888 683 0.19
889 26 0.01
890 399 0.11
891 127 0.03
892 24 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCTGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGTCCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAAT
CCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTC
TCTGGCCAGCGTAGTGCCCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
TATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGG
GGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
TTCGTGGGATGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
Found at i:1530447 original size:26 final size:26
Alignment explanation
Indices: 1530417--1530469 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1530407 TATGACTTAG
*
1530417 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1530443 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1530469 G
1 G
1530470 ATCAGACCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1532845 original size:179 final size:178
Alignment explanation
Indices: 1532545--1532997 Score: 565
Period size: 179 Copynumber: 2.5 Consensus size: 178
1532535 TCTTGCGCAG
*
1532545 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTGAAACTTTAATTTATAGGAAGAT
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAATATT-TTTGGAAACTTTAATTTATAGGAAGAT
* ***
1532610 TGATACTTTCAACTTTTCTTCAAAAATTGATTTTTTGAAAATTTATTTTTAAGG-AAATTGATAC
64 TGATACTTTCAACTTTTCCTCAAAAACCCATTTTTTGAAAATTTATTTTTAAGGAAAATTGATAC
* *
1532674 TTTCAACTTTTC-CCTAAAAATAT-TTTTTTTTTGGAAATTTTCATTTTCAA
129 TTTCAACTTTTCTCC-AAAAATATATATTTTTTTGGAAACTTT-ATTTTCAA
* * * *
1532724 GGAAAATTGATTCTCTCAACTTTTCTTCAAAAATATTTTTGGAAACTTTGATTT-TCAAGGAAGA
1 GGAAAATTGATACTTTCAACTTTTC-CCAAAAATATTTTTGGAAACTTTAATTTAT--AGGAAGA
* *
1532788 TTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTGAAATTTTATTTTTAAGGAAAATTGATA
63 TTGATACTTTCAACTTTTCCTCAAAAACCCATTTTTTGAAAATTTATTTTTAAGGAAAATTGATA
*
1532853 CTTTCAACTTTTCTCCAAAAATATATATTTTTTTGGAAACTTTATTTTTAA
128 CTTTCAACTTTTCTCCAAAAATATATATTTTTTTGGAAACTTTATTTTCAA
* * * **
1532904 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTTTGGAAA-TTTATTTTTTAAAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAA-----TATTTTTGGAAACTTTAATTTATAGGA
* *
1532968 AAATTGATACTTTCAACTTTTCCCCAAAAA
60 AGATTGATACTTTCAACTTTTCCTCAAAAA
1532998 TATTTTTTTT
Statistics
Matches: 237, Mismatches: 24, Indels: 22
0.84 0.08 0.08
Matches are distributed among these distances:
177 1 0.00
178 15 0.06
179 88 0.37
180 66 0.28
181 19 0.08
183 30 0.13
184 6 0.03
185 12 0.05
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (178 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAATATTTTTGGAAACTTTAATTTATAGGAAGATTG
ATACTTTCAACTTTTCCTCAAAAACCCATTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTT
TCAACTTTTCTCCAAAAATATATATTTTTTTGGAAACTTTATTTTCAA
Found at i:1533018 original size:61 final size:60
Alignment explanation
Indices: 1532545--1533007 Score: 477
Period size: 58 Copynumber: 7.7 Consensus size: 60
1532535 TCTTGCGCAG
* * *
1532545 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA---TTCTTTTGAAACTTTA-ATTTATA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGAAA-TTTATTTTTA-A
* ** **
1532603 GGAAGATTGATACTTTCAACTTTTCTTC-AAAA-ATTGATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTG-AAATTTATTTTTAA
* *
1532662 GG-AAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTTGGAAATTTTCATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTT-GAAA-TTT-ATTTTTAA
* * ** * *
1532724 GGAAAATTGATTCTCTCAACTTTTCTTCAAAAATA----TTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGAAA-TTT-ATTTTTAA
* * ***
1532782 GGAAGATTGATACTTTCAACTTTTCCTC-AAAA-ACCCTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGAAA-TTTATTTTTAA
* *
1532841 GGAAAATTGATACTTTCAACTTTTCTCCAAAAATATATATTTTTTTGGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAT-T-TTTTTTTTGAAA-TTTATTTTTAA
*
1532904 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATCTTTTTTTTTTGGAAATTTATTTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTT-GAAATTTA-TTTTTAA
*
1532966 -AAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1533008 ATTTTTATTT
Statistics
Matches: 342, Mismatches: 42, Indels: 39
0.81 0.10 0.09
Matches are distributed among these distances:
56 2 0.01
57 8 0.02
58 84 0.25
59 54 0.16
60 35 0.10
61 56 0.16
62 21 0.06
63 82 0.24
ACGTcount: A:0.33, C:0.13, G:0.08, T:0.46
Consensus pattern (60 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGAAATTTATTTTTAA
Found at i:1533030 original size:5 final size:5
Alignment explanation
Indices: 1533022--1533130 Score: 90
Period size: 5 Copynumber: 22.6 Consensus size: 5
1533012 TTATTTAAAG
*
1533022 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
* * *
1533071 AAAGA- AAAGT AAAACA AAAAT AAAAT --AAT AAAAC AAAAT AAAAT --AAT
1 AAA-AT AAAAT AAAA-T AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1533118 AAAAT AAAAT AAA
1 AAAAT AAAAT AAA
1533131 GGTAAAAAAG
Statistics
Matches: 84, Mismatches: 8, Indels: 24
0.72 0.07 0.21
Matches are distributed among these distances:
3 9 0.11
4 4 0.05
5 60 0.71
6 7 0.08
7 4 0.05
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:1533045 original size:18 final size:18
Alignment explanation
Indices: 1533022--1533130 Score: 94
Period size: 18 Copynumber: 5.4 Consensus size: 18
1533012 TTATTTAAAG
1533022 AAAATAAAATAATAAAAC
1 AAAATAAAATAATAAAAC
1533040 AAAATAAAAGTGAAAATAAAA-
1 AAAATAAAA-T---AATAAAAC
1533061 AAAATAAAATAAAGAAAAGTAAAAC
1 AAAATAAAAT------AA-TAAAAC
1533086 AAAAATAAAATAATAAAAC
1 -AAAATAAAATAATAAAAC
*
1533105 AAAATAAAATAATAAAAT
1 AAAATAAAATAATAAAAC
1533123 AAAATAAA
1 AAAATAAA
1533131 GGTAAAAAAG
Statistics
Matches: 80, Mismatches: 1, Indels: 20
0.79 0.01 0.20
Matches are distributed among these distances:
18 34 0.43
19 7 0.09
20 3 0.04
21 9 0.11
22 7 0.09
23 5 0.06
24 5 0.06
26 10 0.12
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.16
Consensus pattern (18 bp):
AAAATAAAATAATAAAAC
Found at i:1533071 original size:26 final size:23
Alignment explanation
Indices: 1533022--1533116 Score: 63
Period size: 23 Copynumber: 4.1 Consensus size: 23
1533012 TTATTTAAAG
* * *
1533022 AAAATAAAATAATAAAACAAAAT
1 AAAAGAAAATAAAAAAATAAAAT
1533045 AAAAGTGAAAATAAAAAAAATAAAAT
1 AAAA--GAAAAT-AAAAAAATAAAAT
*
1533071 -AAAGAAAAGT-AAAACA-AAAAT
1 AAAAGAAAA-TAAAAAAATAAAAT
* *
1533092 AAAATAATAA-AACAAAATAAAAT
1 AAAAGAA-AATAAAAAAATAAAAT
1533115 AA
1 AA
1533117 TAAAATAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
21 5 0.09
22 14 0.25
23 18 0.32
24 1 0.02
25 8 0.14
26 11 0.19
ACGTcount: A:0.78, C:0.03, G:0.04, T:0.15
Consensus pattern (23 bp):
AAAAGAAAATAAAAAAATAAAAT
Found at i:1533139 original size:18 final size:17
Alignment explanation
Indices: 1533022--1533210 Score: 87
Period size: 18 Copynumber: 11.2 Consensus size: 17
1533012 TTATTTAAAG
*
1533022 AAAATAAAATAATAAAAC
1 AAAATAAAATAA-AAAAT
*
1533040 AAAATAAAAGT-GAAAAT
1 AAAATAAAA-TAAAAAAT
1533057 AAAA-AAAAT--AAAAT
1 AAAATAAAATAAAAAAT
* *
1533071 AAAGA-AAAGTAAAACA-
1 AAA-ATAAAATAAAAAAT
*
1533087 AAAATAAAATAATAAAAC
1 AAAATAAAATAA-AAAAT
1533105 AAAATAAAATAATAAAAT
1 AAAATAAAATAA-AAAAT
* *
1533123 AAAATAAAGGTAAAAAAG
1 AAAATAAA-ATAAAAAAT
* * *
1533141 ATACT-AAATAAACCTAAT
1 AAAATAAAATAAA--AAAT
**
1533159 CTAAT-AAATAAAAAAT
1 AAAATAAAATAAAAAAT
1533175 -AAAT-AAATAAAAAA-
1 AAAATAAAATAAAAAAT
*
1533189 CAAATAATAAATAAAAAA-
1 AAAAT-A-AAATAAAAAAT
1533207 AAAA
1 AAAA
1533211 AACTGGAGCG
Statistics
Matches: 138, Mismatches: 19, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
14 8 0.06
15 24 0.17
16 20 0.14
17 16 0.12
18 66 0.48
19 4 0.03
ACGTcount: A:0.75, C:0.04, G:0.04, T:0.17
Consensus pattern (17 bp):
AAAATAAAATAAAAAAT
Found at i:1533168 original size:4 final size:4
Alignment explanation
Indices: 1533161--1533203 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
1533151 AACCTAATCT
*
1533161 AATA AATA AA-A AATA AATA AATA AA-A AACA AAT- AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AA
1533204 AAAAAAAAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
3 9 0.26
4 26 0.74
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.19
Consensus pattern (4 bp):
AATA
Found at i:1533177 original size:11 final size:11
Alignment explanation
Indices: 1533161--1533206 Score: 58
Period size: 11 Copynumber: 4.2 Consensus size: 11
1533151 AACCTAATCT
1533161 AATAAATAAAA
1 AATAAATAAAA
1533172 AATAAATAAATA
1 AATAAATAAA-A
* *
1533184 AA-AAACAAAT
1 AATAAATAAAA
1533194 AATAAATAAAA
1 AATAAATAAAA
1533205 AA
1 AA
1533207 AAAAAACTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 2 0.07
11 24 0.83
12 3 0.10
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (11 bp):
AATAAATAAAA
Found at i:1533179 original size:15 final size:15
Alignment explanation
Indices: 1533053--1533199 Score: 65
Period size: 15 Copynumber: 9.5 Consensus size: 15
1533043 ATAAAAGTGA
1533053 AAAT-AAAAA-AAAT
1 AAATAAAAAATAAAT
* *
1533066 AAAATAAAGAA-AAGT
1 -AAATAAAAAATAAAT
1533081 AAA-ACAAAAATAAA-
1 AAATA-AAAAATAAAT
*
1533095 ATAATAAAACA-AAAT
1 A-AATAAAAAATAAAT
1533110 AAAATAATAAAATAAAAT
1 -AAATAA-AAAAT-AAAT
* *
1533128 AAAGGTAAAAAAGATACT
1 AAA--TAAAAAATA-AAT
* *
1533146 AAATAAACCTAATCTAAT
1 AAATAAA--AAAT-AAAT
1533164 AAATAAAAAATAAAT
1 AAATAAAAAATAAAT
*
1533179 AAATAAAAAACAAAT
1 AAATAAAAAATAAAT
1533194 -AATAAA
1 AAATAAA
1533200 TAAAAAAAAA
Statistics
Matches: 102, Mismatches: 15, Indels: 32
0.68 0.10 0.21
Matches are distributed among these distances:
13 1 0.01
14 21 0.21
15 37 0.36
16 12 0.12
17 4 0.04
18 24 0.24
19 3 0.03
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (15 bp):
AAATAAAAAATAAAT
Found at i:1534049 original size:31 final size:32
Alignment explanation
Indices: 1534011--1534071 Score: 97
Period size: 31 Copynumber: 1.9 Consensus size: 32
1534001 ACAGCCTCAA
1534011 AAAAAGAAAAAAAATAATAAT-CAGATAAACG
1 AAAAAGAAAAAAAATAATAATACAGATAAACG
*
1534042 AAAAAGAAAAATAATAATAATAACAGATAA
1 AAAAAGAAAAAAAATAATAAT-ACAGATAA
1534072 TCAAAAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 20 0.74
33 7 0.26
ACGTcount: A:0.72, C:0.05, G:0.08, T:0.15
Consensus pattern (32 bp):
AAAAAGAAAAAAAATAATAATACAGATAAACG
Found at i:1534276 original size:16 final size:16
Alignment explanation
Indices: 1534257--1534295 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
1534247 TAAAATGCCT
1534257 AAAATACAAAAAAATA-
1 AAAATA-AAAAAAATAC
*
1534273 AAAATAAAAATAATAC
1 AAAATAAAAAAAATAC
1534289 AAAATAA
1 AAAATAA
1534296 GAACCAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.79, C:0.05, G:0.00, T:0.15
Consensus pattern (16 bp):
AAAATAAAAAAAATAC
Found at i:1534471 original size:11 final size:12
Alignment explanation
Indices: 1534457--1534502 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
1534447 TTCACTTTTT
1534457 TGTTTTTTTTG-
1 TGTTTTTTTTGC
1534468 TGTTTTTTTTGC
1 TGTTTTTTTTGC
* *
1534480 TTTTTTTTTTGT
1 TGTTTTTTTTGC
1534492 TGTTGTTTTTT
1 TGTT-TTTTTT
1534503 AACAAAGCTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
11 11 0.37
12 13 0.43
13 6 0.20
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (12 bp):
TGTTTTTTTTGC
Found at i:1534603 original size:41 final size:42
Alignment explanation
Indices: 1534509--1534637 Score: 201
Period size: 41 Copynumber: 3.1 Consensus size: 42
1534499 TTTTAACAAA
* *
1534509 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-AGTAAATT
1534552 GCTCCTCTAAACAGAGGCACCACGAC-TTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1534593 GCTCCTCTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1534634 GCTC
1 GCTC
1534638 ACGGACTTTG
Statistics
Matches: 82, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
40 1 0.01
41 50 0.61
42 7 0.09
43 24 0.29
ACGTcount: A:0.35, C:0.25, G:0.19, T:0.22
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:1534681 original size:66 final size:67
Alignment explanation
Indices: 1534578--1534703 Score: 236
Period size: 66 Copynumber: 1.9 Consensus size: 67
1534568 GCACCACGAC
1534578 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCACGGA
1 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCACGGA
1534643 CT
66 CT
*
1534645 TTGG-AAATTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTC
1 TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTC
1534704 CTCTAAACAG
Statistics
Matches: 58, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
66 54 0.93
67 4 0.07
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (67 bp):
TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGACTTTGGAAAGTAAATTGCTCACGGA
CT
Found at i:1534744 original size:42 final size:41
Alignment explanation
Indices: 1534641--1534747 Score: 196
Period size: 41 Copynumber: 2.6 Consensus size: 41
1534631 ATTGCTCACG
*
1534641 GACTTTGGAAATTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1534682 GACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1 GACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
1534723 GACTTTTGGAAAGTAAATTGCTCCT
1 GAC-TTTGGAAAGTAAATTGCTCCT
1534748 TGACAAACAT
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
41 43 0.67
42 21 0.33
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (41 bp):
GACTTTGGAAAGTAAATTGCTCCTCTAAACAGAGGCACCAC
Found at i:1535844 original size:19 final size:17
Alignment explanation
Indices: 1535804--1535844 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
1535794 TCACCTTTTT
1535804 AATTTTTTCAAGCATAG
1 AATTTTTTCAAGCATAG
*
1535821 TATTTTTTCACAGCATCAG
1 AATTTTTTCA-AGCAT-AG
1535840 AATTT
1 AATTT
1535845 ATAGGATGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 9 0.45
18 5 0.25
19 6 0.30
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.44
Consensus pattern (17 bp):
AATTTTTTCAAGCATAG
Found at i:1546018 original size:4 final size:4
Alignment explanation
Indices: 1546009--1546033 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
1545999 CCAGCGTAGT
1546009 GCCC GCCC GCCC GCCC GCCC GCCC G
1 GCCC GCCC GCCC GCCC GCCC GCCC G
1546034 TTCCTTTCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.72, G:0.28, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:1546245 original size:26 final size:26
Alignment explanation
Indices: 1546215--1546267 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1546205 GTTGACTTAG
*
1546215 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
1546241 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTCTAA
1546267 G
1 G
1546268 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTCTAA
Found at i:1548672 original size:58 final size:57
Alignment explanation
Indices: 1548598--1549080 Score: 546
Period size: 59 Copynumber: 8.2 Consensus size: 57
1548588 TCTTGCGCAG
* *
1548598 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTCTTTTGAAACTTTAATTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAAACTTTATTTTA-A
* * *
1548656 GGAAGATTGATACTTTCAAC-TTTCCTCAAAAAT-TGATTTTTGAAA-ATTATTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATAT-TTTTTTGAAACTTTATTTTAA
* * *
1548711 GGCAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAATTTTAATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTT-GAAACTTT-ATTTT-AA
* *
1548772 GGAAAATTGATACTTTCAACTTTTACTCAAAAATA-TTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAACTTT-ATTTT-AA
*
1548830 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCT-TTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA--TATTTTTTTGAAACTTTA-TTTTAA
* * *
1548889 GGAATATTAATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT-GAAACTTT-ATTTT-AA
* ** *
1548949 GGAAGATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-TATTTTTTTGAAACTTTA-TTTTAA
* * *
1549008 GGAAAATTGATACTTTCAACTTTTCCCCAAAATTTTTTTTTTTTGGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAA--ATATTTTTTT-GAAACTTTA-TTTTAA
1549069 GGAAAATTGATA
1 GGAAAATTGATA
1549081 AGGAAAATTG
Statistics
Matches: 368, Mismatches: 35, Indels: 41
0.83 0.08 0.09
Matches are distributed among these distances:
55 19 0.05
56 20 0.05
57 25 0.07
58 79 0.21
59 84 0.23
60 73 0.20
61 68 0.18
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAACTTTATTTTAA
Found at i:1548855 original size:119 final size:116
Alignment explanation
Indices: 1548598--1549080 Score: 582
Period size: 119 Copynumber: 4.1 Consensus size: 116
1548588 TCTTGCGCAG
* * * * * *
1548598 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTCTTTTGAAACTTTA-ATTTAGAGGAAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTTTGAAATTTTATTTTTA-AGGAAA
* *
1548661 ATTGATACTTTCAAC-TTTCCTCAAAAATTGATTTTT-GAAA-ATTATTTT-AA
65 ATTGATACTTTCAACTTTTCCCCAAAAA-T-ATTTTTGGAAACTTTATTTTCAA
* * *
1548711 GGCAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGGAAATTTTAATTTTCAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTTT-GAAATTTT-ATTTTTAAGGAA
* *
1548776 AATTGATACTTTCAACTTTTACTCAAAAATATTTTTGGAAACTTTGATTTTCAA
64 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTGGAAACTTT-ATTTTCAA
* * *
1548830 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGGAATA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTTTGAAATTTTATTTTTAAGGAAAA
* *
1548895 TTAATACTTTCAACTTTTCCCCAAAAATATTTTTTTAGAAACTTTGATTTTCAA
66 TTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTGGAAACTTT-ATTTTCAA
* * **
1548949 GGAAGATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTTGAAATTTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTTTGAAATTTTATTTTTAAGGAAAA
* * *
1549014 TTGATACTTTCAACTTTTCCCCAAAATTTTTTTTTTTTGGAAACTTTATTTTTAA
66 TTGATACTTTCAACTTTTCCCCAAAA----ATATTTTTGGAAACTTTATTTTCAA
1549069 GGAAAATTGATA
1 GGAAAATTGATA
1549081 AGGAAAATTG
Statistics
Matches: 327, Mismatches: 28, Indels: 23
0.87 0.07 0.06
Matches are distributed among these distances:
113 33 0.10
114 6 0.02
115 13 0.04
116 26 0.08
117 54 0.17
118 13 0.04
119 150 0.46
120 18 0.06
121 13 0.04
123 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (116 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTTTGAAATTTTATTTTTAAGGAAAA
TTGATACTTTCAACTTTTCCCCAAAAATATTTTTGGAAACTTTATTTTCAA
Found at i:1549084 original size:13 final size:13
Alignment explanation
Indices: 1549066--1549093 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1549056 ACTTTATTTT
1549066 TAAGGAAAATTGA
1 TAAGGAAAATTGA
1549079 TAAGGAAAATTGA
1 TAAGGAAAATTGA
1549092 TA
1 TA
1549094 CTTTCAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.21, T:0.25
Consensus pattern (13 bp):
TAAGGAAAATTGA
Found at i:1549150 original size:5 final size:5
Alignment explanation
Indices: 1549140--1549227 Score: 78
Period size: 5 Copynumber: 17.6 Consensus size: 5
1549130 TTATTTAAAG
1549140 AAAAT AAAAT --AAT AAAAT AAAAT AAAAGT GAAAAT AAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT -AAAAT AAAAT
* *
1549186 AAAAT AAAGA- AAAGT AAAAC AAAA- ATAAA- AAAAT AAAAT AAA
1 AAAAT AAA-AT AAAAT AAAAT AAAAT A-AAAT AAAAT AAAAT AAA
1549228 GGTAAAAAGG
Statistics
Matches: 71, Mismatches: 4, Indels: 16
0.78 0.04 0.18
Matches are distributed among these distances:
3 3 0.04
4 4 0.06
5 52 0.73
6 8 0.11
7 4 0.06
ACGTcount: A:0.78, C:0.01, G:0.05, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:1549212 original size:21 final size:19
Alignment explanation
Indices: 1549175--1549223 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
1549165 AAGTGAAAAT
*
1549175 AAAAATAAAA-TAAAATAA
1 AAAAATAAAACAAAAATAA
1549193 AGAAAAGTAAAACAAAAATAA
1 A-AAAA-TAAAACAAAAATAA
1549214 AAAAATAAAA
1 AAAAATAAAA
1549224 TAAAGGTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 1 0.04
19 9 0.33
20 9 0.33
21 8 0.30
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.12
Consensus pattern (19 bp):
AAAAATAAAACAAAAATAA
Found at i:1550389 original size:16 final size:16
Alignment explanation
Indices: 1550347--1550391 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 16
1550337 TAAAATGCCT
*
1550347 AAAATACAAAAGAAAA
1 AAAATACAAAATAAAA
1550363 AAAATA-AAAATAAAA
1 AAAATACAAAATAAAA
*
1550378 ATAATACAAAATAA
1 AAAATACAAAATAA
1550392 GAACCGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.13
Consensus pattern (16 bp):
AAAATACAAAATAAAA
Found at i:1550561 original size:8 final size:8
Alignment explanation
Indices: 1550550--1550586 Score: 58
Period size: 8 Copynumber: 4.6 Consensus size: 8
1550540 ACATTTTCAT
1550550 TTTTTTTG
1 TTTTTTTG
1550558 TTTTTTTG
1 TTTTTTTG
1550566 TTTTTTT-
1 TTTTTTTG
1550573 TTTGTTTTG
1 TTT-TTTTG
1550582 TTTTT
1 TTTTT
1550587 GACCAAAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
7 3 0.11
8 21 0.78
9 3 0.11
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (8 bp):
TTTTTTTG
Found at i:1550572 original size:11 final size:11
Alignment explanation
Indices: 1550549--1550587 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
1550539 AACATTTTCA
*
1550549 TTTTTT-TTGT
1 TTTTTTGTTTT
1550559 TTTTTTGTTTT
1 TTTTTTGTTTT
1550570 TTTTTTGTTTT
1 TTTTTTGTTTT
*
1550581 GTTTTTG
1 TTTTTTG
1550588 ACCAAAGCTC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
10 6 0.23
11 20 0.77
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:1550663 original size:43 final size:40
Alignment explanation
Indices: 1550597--1550767 Score: 200
Period size: 41 Copynumber: 4.1 Consensus size: 40
1550587 GACCAAAGCT
* *
1550597 CTCTAAACAGAGGCTCAACGACTTGAGAAACATAAATTGCTC
1 CTCTAAACAGAGGCACCACGACTTG-GAAA-ATAAATTGCTC
* *
1550639 CTTTTAAACAGAGGCACCATGACTTGGAAAAGTAAATTGCTC
1 C-TCTAAACAGAGGCACCACGACTTGGAAAA-TAAATTGCTC
*
1550681 CTCTAAACAGAGGCACCATGACTTTTGG-AAATAAATTGCTC
1 CTCTAAACAGAGGCACCACGAC--TTGGAAAATAAATTGCTC
*
1550722 CTCTAAACAGAGGCACCACGACTTTTTGGAAAGTAAATTGCTC
1 CTCTAAACAGAGGCACCACGAC---TTGGAAAATAAATTGCTC
1550765 CTC
1 CTC
1550768 GACAAACATG
Statistics
Matches: 116, Mismatches: 7, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
41 52 0.45
42 25 0.22
43 39 0.34
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.25
Consensus pattern (40 bp):
CTCTAAACAGAGGCACCACGACTTGGAAAATAAATTGCTC
Found at i:1551792 original size:9 final size:9
Alignment explanation
Indices: 1551780--1551804 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
1551770 TCACTTTTTT
1551780 TTTTTTTCA
1 TTTTTTTCA
1551789 TTTTTTTCA
1 TTTTTTTCA
1551798 TTTTTTT
1 TTTTTTT
1551805 TTAAGCATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:1562486 original size:122 final size:118
Alignment explanation
Indices: 1562209--1562669 Score: 646
Period size: 122 Copynumber: 3.9 Consensus size: 118
1562199 TCTTGCGCAG
* * * * * *
1562209 GGAAAATTGATACTTTCAACTTTTCCCTAAAAA-TATTCTTTTGAAACTTTA-ATTT-AGAGAAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACTTTTTTTTTGAAATTTTATTTTTAAG-GAAA
* *
1562271 ATTGATACTTTCAACTTTTCCTCAAAAAT-TGATTTTTT-GAAAATTTATTTTTAA
65 ATTGATACTTTCAACTTTTCCCCAAAAATAT--TTTTTTGGAAACTTTATTTTTAA
* *
1562325 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTTGGAAATTTTGATTTTCAAGGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-CTTTTTTTTT-GAAATTTT-ATTTTTAAGGA
*
1562390 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAA
63 AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTT-ATTTTTAA
* * *
1562447 GGAAGATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACTTTTTTTTTGAAATTTTATTTTTAAGGAAAA
1562512 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGGAAACTTTATTTTTAA
66 TTGATACTTTCAACTTTTCCCCAAAAATA---TTTTTTTGGAAACTTTATTTTTAA
1562568 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTTTTGGAAA-TTTATTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAAC-TTTTTTTTT-GAAATTTTATTTTTAAGGAA
1562632 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
64 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1562670 TTATTTTTAT
Statistics
Matches: 312, Mismatches: 19, Indels: 25
0.88 0.05 0.07
Matches are distributed among these distances:
116 32 0.10
118 7 0.02
119 56 0.18
120 15 0.05
121 87 0.28
122 111 0.36
123 4 0.01
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAACTTTTTTTTTGAAATTTTATTTTTAAGGAAAA
TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTATTTTTAA
Found at i:1562670 original size:60 final size:61
Alignment explanation
Indices: 1562209--1562671 Score: 644
Period size: 60 Copynumber: 7.7 Consensus size: 61
1562199 TCTTGCGCAG
* * *
1562209 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA--TTCTTTT-GAAACTTTA-ATTT-A
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAACTTTATTTTTAA
* * ** *
1562265 GAGAAGATTGATACTTTCAACTTTTCCTCAAAAAT-TGATTTTTT-GAAAATTTATTTTTAA
1 G-GAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAACTTTATTTTTAA
* * *
1562325 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATTTTTTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAACTTT-ATTTTTAA
*
1562387 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAACTTT-ATTTTTAA
* * ** *
1562447 GGAAGATTGATACTTTCAACTTTTCCTCAAAAA-CCTTTTTTTT-GAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAACTTTATTTTTAA
1562506 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTTTGGAAACTTTATTTTTAA
*
1562568 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTTTTGGAAA-TTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAACTTTATTTTTAA
1562628 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTT
1562672 ATTTTTATTT
Statistics
Matches: 367, Mismatches: 27, Indels: 22
0.88 0.06 0.05
Matches are distributed among these distances:
56 1 0.00
57 30 0.08
58 13 0.04
59 72 0.20
60 125 0.34
61 36 0.10
62 90 0.25
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (61 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAACTTTATTTTTAA
Found at i:1562670 original size:181 final size:179
Alignment explanation
Indices: 1562209--1562670 Score: 709
Period size: 181 Copynumber: 2.6 Consensus size: 179
1562199 TCTTGCGCAG
* * *
1562209 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTT-GAAACTTTA-ATTT-AGAGAAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTATTTTTAAG-GAAG
*
1562271 ATTGATACTTTCAACTTTTCCTCAAAAATTGATTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
65 ATTGATACTTTCAACTTTTCCTCAAAAATT-TTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
*
1562336 ACTTTCAACTTTTCCCCAAAAATTTTTTTTTTTGGAAATTTTGATTTTCAA
129 ACTTTCAACTTTTCCCCAAAAATTTTTTTTTTTGGAAACTTTGATTTTCAA
*
1562387 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAAGGAAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTT-ATTTTTAAGGAAG
* *
1562452 ATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAAGGAAAATTGAT
65 ATTGATACTTTCAACTTTTCCTCAAAAA-TTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
*
1562517 ACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGGAAACTTT-ATTTTTAA
129 ACTTTCAACTTTTCCCCAAAAAT-TTTTTTTTTTGGAAACTTTGATTTTCAA
*
1562568 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACATTTTTTTTTGGAAA-TTTATTTTTAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCC-AAAA-ATATTTTTTTGGAAACTTTATTTTTAAGGAA
* *
1562632 AATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
64 GATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTTT
1562671 TATTTTTATT
Statistics
Matches: 261, Mismatches: 14, Indels: 15
0.90 0.05 0.05
Matches are distributed among these distances:
178 40 0.15
179 8 0.03
180 1 0.00
181 170 0.65
182 28 0.11
183 14 0.05
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.45
Consensus pattern (179 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTATTTTTAAGGAAGA
TTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATAC
TTTCAACTTTTCCCCAAAAATTTTTTTTTTTGGAAACTTTGATTTTCAA
Found at i:1562694 original size:5 final size:5
Alignment explanation
Indices: 1562686--1562790 Score: 92
Period size: 5 Copynumber: 20.6 Consensus size: 5
1562676 TTATTTAAAG
*
1562686 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
* * *
1562736 AAAGA- AAGA- AAAGT AAAACA AAAAT AAAAT AAAAT AAAAT AAAAAAT
1 AAA-AT AAAAT AAAAT AAAA-T AAAAT AAAAT AAAAT AAAAT --AAAAT
1562783 AAAAT AAA
1 AAAAT AAA
1562791 GGTAAAAAGG
Statistics
Matches: 83, Mismatches: 8, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
3 3 0.04
4 3 0.04
5 61 0.73
6 7 0.08
7 9 0.11
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:1562760 original size:40 final size:39
Alignment explanation
Indices: 1562686--1562790 Score: 140
Period size: 40 Copynumber: 2.6 Consensus size: 39
1562676 TTATTTAAAG
**
1562686 AAAATAAAATAATAAAACAAAATAAAAGTGAAAATAAAAT
1 AAAATAAAATAA-AAAACAAAATAAAAGCAAAAATAAAAT
*
1562726 AAAATAAAATAAAGAAAGAAAAGTAAAA-CAAAAATAAAAT
1 AAAATAAAATAAA-AAACAAAA-TAAAAGCAAAAATAAAAT
*
1562766 AAAATAAAATAAAAAATAAAATAAA
1 AAAATAAAATAAAAAACAAAATAAA
1562791 GGTAAAAAGG
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
38 4 0.07
39 8 0.14
40 42 0.71
41 5 0.08
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (39 bp):
AAAATAAAATAAAAAACAAAATAAAAGCAAAAATAAAAT
Found at i:1562828 original size:4 final size:4
Alignment explanation
Indices: 1562821--1562849 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
1562811 AACCTAATCT
1562821 AATA AAT- AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AA
1562850 AATCTGGAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:1563730 original size:28 final size:31
Alignment explanation
Indices: 1563665--1563723 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
1563655 ATCACAGCCC
1563665 CAAAAAAGAAAAAAAAATAATAATCAGATAAA
1 CAAAAAAGAAAAAAAAAT-ATAATCAGATAAA
*
1563697 CGAAAAAG-AAAAAAAAT-TAA-CAGATAA
1 CAAAAAAGAAAAAAAAATATAATCAGATAA
1563724 TTAAAAATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 7 0.27
29 3 0.12
31 9 0.35
32 7 0.27
ACGTcount: A:0.73, C:0.07, G:0.08, T:0.12
Consensus pattern (31 bp):
CAAAAAAGAAAAAAAAATATAATCAGATAAA
Found at i:1563765 original size:43 final size:41
Alignment explanation
Indices: 1563705--1563786 Score: 96
Period size: 43 Copynumber: 2.0 Consensus size: 41
1563695 AACGAAAAAG
*
1563705 AAAAAAAATTAACAGATAATTAAA-AATAAAATAAGATAAATCC
1 AAAAAAAATTAACAGATAA-AAAATAAT-AAATAA-ATAAATCC
*
1563748 AAAAAATATT-ACAAGATAAAAAATAATAAATAAATAAAT
1 AAAAAAAATTAAC-AGATAAAAAATAATAAATAAATAAAT
1563787 TATAATATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
41 6 0.17
42 11 0.31
43 18 0.51
ACGTcount: A:0.70, C:0.05, G:0.04, T:0.22
Consensus pattern (41 bp):
AAAAAAAATTAACAGATAAAAAATAATAAATAAATAAATCC
Found at i:1563946 original size:16 final size:16
Alignment explanation
Indices: 1563904--1563948 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 16
1563894 TAAAATACCT
*
1563904 AAAATACAAAAGAAAA
1 AAAATACAAAATAAAA
1563920 AAAATA-AAAATAAAA
1 AAAATACAAAATAAAA
*
1563935 ATAATACAAAATAA
1 AAAATACAAAATAA
1563949 GAACCAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.13
Consensus pattern (16 bp):
AAAATACAAAATAAAA
Found at i:1564624 original size:25 final size:24
Alignment explanation
Indices: 1564595--1564641 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
1564585 GTTGACTTAG
1564595 GCATATAGAGTTCATTCCCAGTCAA
1 GCATATAGAGTTCATT-CCAGTCAA
*
1564620 GCATATGGAGTTCATTCCAGTC
1 GCATATAGAGTTCATTCCAGTC
1564642 TAAGATCGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (24 bp):
GCATATAGAGTTCATTCCAGTCAA
Found at i:1566763 original size:860 final size:864
Alignment explanation
Indices: 1564018--1568580 Score: 5508
Period size: 875 Copynumber: 5.2 Consensus size: 864
1564008 TGGGTGTCTA
* * *
1564018 CAGTAGCCATTAAAGTGTCTAAAATGGGGACACCTTTTTCAAAATGGTCACAAAATCCTGTACAC
1 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCCTATACAC
* * *
1564083 TTCGACTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
65 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGT
* * * * * * **
1564148 TTGGGACCAAAAATCCTTCTAAAAAAATTTTAAAAAAATCTCGAACTGTAAAAAGTTTCCAAAAT
130 TTGGGGCCAAAACTCCTTCTGAAAAAA-TTAAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
* *
1564213 CATGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
194 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* *
1564278 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCAC
259 ATGAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCAC
* ** * **
1564343 CTACCACCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGATGGCGTAGTGCCCACCCGTC
324 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACC
** * * * *
1564408 CGCTTGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATTGGACCGG
389 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
* * * * * * ** *
1564473 ACCGATGGTTG-TGACAGCAGGATCGGAAGGATGCTGAGGGGGACCCGACCAATCCCCGGCTTGC
454 ACAGAGGGTTGAGGA-AGCAGAATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGC
* * * *
1564537 GCATCCTGCCCCTCTGGCCGACTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATATA
518 GCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG----A--C-T-TA
*
1564602 GAGTTCATTCCCAGTCAAGCATATGGAGTTCATT-CCAGTCTAAGATCGGACCGGACCGGGGGTT
575 G-G--------CA-T--A-C----GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * * *
1564666 ATGGTTGCACATGCTGGGCTCGGGCATGAGCTGGTGTCGTATTCTTTTTCGCTCGGGGCACCATC
623 ACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCTC-GGGCACCATC
* * * *
1564731 GCCGGAG-AAC-T---TG-ACC-G---GTA--GCATTGGGGTTCCAGCGATTAGGGGGGCCGGGG
687 GCCGGAGCATCGTCGGAGAACCTGACCG-ACGGCATTGGGGTTCCGGCGATTGGGGGGGCC----
*
1564784 GGGTGTGCGCACATAATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
747 GGGTGTGCG-------TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
*
1564849 ATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
805 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* * *
1564909 CAGTAGCCATTAAAATGTCTGAAATGGGAACACTTTTTTCAAGTGGTCACAAAATCCTATACACT
1 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACT
* * * *
1564974 TTGAGTTTTTAGTTGAATTTTTTTGTGCATGCCCATAAAAATACAAGGATCACGTCTACGAAGTT
66 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
1565039 TGGGGCCAAAACTTCTTCTGAAAAAATTTAAAAAAATCCCGAATC-TAAAAGGTTTTGAAAATCA
131 TGGGGCCAAAACTCCTTCTGAAAAAATTAAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCA
*
1565103 TGAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
196 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
* *
1565168 GAATTTACAAGCCATAAAAATGGCATTGGCAGGGTAGAAATATGAAGATGTGCCTAAACCTACCT
261 GAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
1565233 ACCACCCTATCGATCCACAGCTTACGCATCCCGACTTTCTGGCCGGTGTAGTGCCCGCCCACCCG
326 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG
* **
1565298 CCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GATTGGAC
391 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* * * * * * * *
1565362 CGAGGGTTGCA-GCAGCAGGATTGGCAGCACGCTGAGGGGGACCTGGCCGATCCCTGGCTTGCGC
456 AGAGGGTTG-AGGAAGCAGAATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGC
* * * *
1565426 ATCCTACCGCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTTGGCATACGGA
520 ATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * * * * *
1565491 GTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTCACAGGTGCACATGCTGGGCTCGGGCAT
585 GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCAT
* * * *
1565556 GTGCTGGTGCAGCATTTTTTTTTGCTTGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
650 GTGCTGGTGCCGTATTTTTTTTCGC-TCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
* * * *
1565621 GATGGCATTAGGGTTCCGGAGATTGTGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGG
714 GACGGCATTGGGGTTCCGGCGATTGGGGGGGCC-----GGGTGT--G--C--G-TGTGCGATGGG
* *
1565686 TGCAGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCACACCCCCT
767 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
1565751 TAAAGAGCATTTGAGATTTTATAGGTTTACTGC
832 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
*
1565784 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
1 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACT
* * * * * *
1565849 TAGTGTTTTTGGCTGAATTTTTTTATGCATGCCAATAAAAATACAGGGATCACGTCTACTAAGTT
66 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTT
* * * * *
1565914 TAGGGCCAAAACTCCATCTGGAAAAATTAAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAATCG
131 TGGGGCCAAAACTCCTTCTGAAAAAATTAAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCA
*
1565979 TGAAAAATAGAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
196 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
* * * *
1566044 GAATTTACAAGCCATAAAAATGGCATTGGCATGGCTGAAATAGGAAGATGTGCATAAACCCACCT
261 GAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
1566109 ACCACCCTATCCATCCACGGCTTGCGCATCCCGCCTCTTTGG-CGGCGTAGTGCCCGCCCACCCG
326 ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG
* * *
1566173 -TCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGAC
391 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
* ** * * *
1566237 AGAGGGCTGAGGAAGCAGAATCGATAGCACATTGAGGGGGACTCGACCGATCCCCGGCTTACGCA
456 AGAGGGTTGAGGAAGCAGAATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* * *
1566302 TCCTACCCCTCTGGCCGGTTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
521 TCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
* ** *
1566367 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTAGGGCATG
586 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATG
* * *
1566432 TGCTGGTGCCGTA-TTTTTTTCGCTCTGGGCATCATCGTCGGGGCATCGTCGGAGAACCTGACCG
651 TGCTGGTGCCGTATTTTTTTTCGCTC-GGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
* *
1566496 ACAGCATTGGGGTTCCGGCGATTGGGGGGGCCGGG-GTG-GTGTGCGATGGGTGCTGGTATTTGG
715 ACGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGTGTGCGTGTGCGATGGGTGCTGGTACTTGG
*
1566559 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTG
780 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* *
1566624 AGATTTTACAGGTTTACTGT
845 AGATTTTACAGGTTTGCTGC
* *
1566644 CACTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACT
1 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACT
* *
1566709 TCGAGTTTTTCGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
66 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTT
* *
1566774 TGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC
131 TGGGGCCAAAACTCCTTCTGAAAAAA-TTAAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC
*
1566839 ATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
195 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
1566904 TGAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCACC
260 TGAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * *** *
1566969 TACCACCCTTTTGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCAGCGTAGTGCCCGCCTGTCT
325 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCC
* * * * * * * * *
1567034 ACCCGCTTGTTTTGTCGGTTAGCTTAGGCAGACGGAGTTTATTCCCAATCTAAGATCGAACCAGA
390 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
* * * * * * * * *
1567099 CCGAGGGTTGTGCCAA-TAGGATTGGCAGGACACTGAGGGGGACCCGACCGATCCTCGACTTGCG
455 CAGAGGGTTGAG-GAAGCAGAATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * *
1567163 CATCCTGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTCCATGGGTTGACTTAGGCATACAG
519 CATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC-T-----T--AG
*
1567228 AATTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
576 ------------------GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTT
* * * *
1567293 ACGGGTGCACATGCTGGGCTCGAGAATGTGCTGGTGCAGCATTTTTTTTCGCTCGGGCGACCATC
623 ACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCTCGGGC-ACCATC
* ** * * ** * *
1567358 ACCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGAAGGTCTGGGTG
687 GCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGC--CG-G
* *
1567423 GTGTGCACACATGATGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTTGCCCCCTATCCCTCAT
749 GTGTG----C--G-TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
*
1567488 CAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
807 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* *
1567546 AAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACT
1 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACT
* * * * * *
1567611 TTGAGTTTTTAG-TATAATTTTTTTTTGCATGCCCACAAAAATACAAGGATCACATCTACCAAGT
66 TCGAGTTTTTAGCT-GAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGT
* * * *
1567675 TTGGGGCCAAAAATGCTCCTGAAAAAATTAAAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATC
130 TTGGGGCCAAAACTCCTTCTGAAAAAATTAAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATC
* * * *
1567740 GTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAATGCTTAAGGGACCGTTGTA
195 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* * *
1567805 TGAATTTACAAGGCATAAAAATGGCATTGGCAGGGCAAAAATATGAAGATGTGCCTAAACCCAAC
260 TGAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
1567870 TACCAGCCTATCGATCTACGACTTGCGCATCCCGCCTCTCTGGCTGACGTAGTGTCCGCCCGCCC
325 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA--GT--GCCCGCCC
* * * *
1567935 GCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
386 ACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * *
1568000 CGGACTA-AGGGTTGCGGTAGCA-AGATCGGTAGGACGA-TGAGGGGGACCCGACCGATTCCCAG
451 CGGAC-AGAGGGTTGAGGAAGCAGA-ATCGGCAGCAC-ACTGAGGGGGACCCGACCGATCCCCGG
* *
1568062 CTTGCGCATACTACCCCTCTGGCCGGCTGAGCGTCCGCACGCTCGTTTCATGGGTTGACTTAGGC
513 CTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGC
** * * *
1568127 ATACAAAGTTCATTCCTAGTCTAAGATCGGACCGGACGGAGGGTTGCGGGTGCACATGCTGGGCT
578 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCT
** * *
1568192 CAAGCATGTGCTGGTGCCATATTTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAA
643 CGGGCATGTGCTGGTGCCGTATTTTTTTTCGCTC-GGGCACCATCGCCGGAGCATCGTCGGAGAA
* * * * *
1568257 CCTGACCGGCGGCATAGGGGTTCCGGCGATTGGGGGGGCTGAGGGGGTGTGTGCCCATTACATGC
707 CCTGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGC-----CGG-GTGTG--C-GT--GTGC
* * * * *
1568322 GATGGGTGCTGCTACGTAGCCCTTTATATTGGCCCCCTATCCCTCATCCAACCTTGAGAACTCAC
761 GATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1568387 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTAC
825 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
* **
1568427 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATTCGGTACACT
1 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACT
*
1568492 TCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTT
66 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTT
*
1568557 TGGGGCCAAAACGCCTTCTGAAAA
131 TGGGGCCAAAACTCCTTCTGAAAA
1568581 GTAGAAAACG
Statistics
Matches: 3190, Mismatches: 393, Indels: 188
0.85 0.10 0.05
Matches are distributed among these distances:
860 245 0.08
861 199 0.06
862 26 0.01
863 230 0.07
864 6 0.00
865 1 0.00
866 2 0.00
867 1 0.00
868 3 0.00
869 8 0.00
870 3 0.00
871 2 0.00
872 1 0.00
873 2 0.00
874 147 0.05
875 472 0.15
876 174 0.05
877 1 0.00
878 2 0.00
879 147 0.05
880 28 0.01
881 216 0.07
882 9 0.00
883 1 0.00
887 100 0.03
888 243 0.08
889 99 0.03
890 168 0.05
891 36 0.01
892 1 0.00
893 2 0.00
894 3 0.00
897 2 0.00
899 1 0.00
901 203 0.06
902 244 0.08
903 2 0.00
904 2 0.00
905 157 0.05
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTT
TGGGGCCAAAACTCCTTCTGAAAAAATTAAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCACCCG
CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC
AGAGGGTTGAGGAAGCAGAATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
TCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGTATTTTTTTTCGCTCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGTGTGCGTGTGCGATGGGTGCTGGTACTTGGC
CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
GATTTTACAGGTTTGCTGC
Found at i:1567249 original size:26 final size:26
Alignment explanation
Indices: 1567220--1567272 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1567210 GTTGACTTAG
1567220 GCATACAGAATTCATTCCCAATCTAA
1 GCATACAGAATTCATTCCCAATCTAA
* * *
1567246 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAATCTAA
1567272 G
1 G
1567273 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAATCTAA
Found at i:1569505 original size:26 final size:26
Alignment explanation
Indices: 1569469--1569521 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1569459 GTTGACTTAG
*
1569469 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1569495 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1569521 G
1 G
1569522 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1571089 original size:26 final size:26
Alignment explanation
Indices: 1571059--1571111 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1571049 GTTGACTTAG
*
1571059 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1571085 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1571111 G
1 G
1571112 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1571219 original size:185 final size:185
Alignment explanation
Indices: 1570897--1571320 Score: 679
Period size: 185 Copynumber: 2.3 Consensus size: 185
1570887 TCTATTGGCT
* *
1570897 TAAGCAAACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAAGGTTGTGGCAACAGGATCG
1 TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAAGGTTGCGGCAACAGGATCG
* *
1570962 GTAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAG
66 GTAGCACACAAAGGGGGACCCGACCGATCCCCAGCTTACGCATCCTACCCCTCTGGCCGGCTGAG
*
1571027 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATAC-AGAGTTCATTCCCAGTC
131 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTC
* * *
1571082 TAAGCATACAGAGTTCATTCCCAATCTAAGATCAGATCGGATCAAGGGTTGCGGCAACAGGATCG
1 TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAAGGTTGCGGCAACAGGATCG
** *
1571147 GTAGCACACAAAGGGGGACCCGACCGATCCCTGGCTTACGCATCCTGCCCCTCTGGCCGGCTGAG
66 GTAGCACACAAAGGGGGACCCGACCGATCCCCAGCTTACGCATCCTACCCCTCTGGCCGGCTGAG
*
1571212 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTC
131 CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
* * * * *
1571267 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAATTGGACCGACGGTTGCGG
1 TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAAGGTTGCGG
1571321 GTGAACATGT
Statistics
Matches: 219, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
185 218 1.00
186 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (185 bp):
TAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCGGACCAAAGGTTGCGGCAACAGGATCG
GTAGCACACAAAGGGGGACCCGACCGATCCCCAGCTTACGCATCCTACCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTC
Found at i:1571274 original size:26 final size:26
Alignment explanation
Indices: 1571244--1571296 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1571234 GTTGACTTAG
*
1571244 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1571270 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1571296 G
1 G
1571297 ATCAAATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1573432 original size:710 final size:707
Alignment explanation
Indices: 1572276--1573608 Score: 2048
Period size: 710 Copynumber: 1.9 Consensus size: 707
1572266 CATGGCCGAT
* * *
1572276 GGCATTGGCGTTCCGGCGATTAGGGGGGTCGGAGGGGGTGTGCGCACATGATGTACGATGGGTGC
1 GGCATTGGCGTTCCGACGATTAGGGGGGACGGAGGGGGTGTGCACACATGATGTACGATGGGTGC
* * * *
1572341 TGGTACTTGGCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCTCCTTAAA
66 TGATACTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
1572406 GAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTTT
131 GAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
1572471 TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
196 TTTCAAATGGTCACAAAATCCTGTAAACTTCGAGTGTTTAGCTGAATTTTTTTATGCATGCCAAA
* * * * *
1572536 AAAAATACAAGGATAATGTCTACCAAGTTTGGGGCTAAAACTTCTTCTGATAAAATTTTAAAAAA
261 AAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAA
* * *
1572601 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTTAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
326 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAAC
* * * *
1572666 TTCACATGAAGGCTTAAGGGAGCATTGTACGAATTTACAAGCCATAAAAGTGGCATTCGCATGGC
391 TTCACATGAAGGCTTAAGGGACCATTGTACGAATTTAAAAGCCATAAAAATGGCATTCGCACGG-
*
1572731 CA-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG-CGCATCCCG
455 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGTC-CATCCCG
* *
1572794 CCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCA
519 CCTCTCTGGCCGGCGTAGT----GCCTGCCCGCCCGCCCGCTCATTTCATCGATTGGCTTAAGCA
** *
1572859 CATGGAGTTCAGTCCCAGTCTAAGATCACACCGGACCGAGGGTTGCGGGTTCACTTGTTGGGCTC
580 CACAGAGTTCAGTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGGTTCACTTGTTGGGCTC
1572924 AGGCATGTGTTGGTGCCGTATTTTTTTTCATCTGGGGCACCATCGCCGGAGAAACTGACTGAC
645 AGGCATGTGTTGGTGCCGTATTTTTTTTCATCTGGGGCACCATCGCCGGAGAAACTGACTGAC
* * *
1572987 GGCATTGGGGTTCCGACGATT-GGGGGGAACGG-GGGGGTGTGCACACATTATGTTCGATGGGTG
1 GGCATTGGCGTTCCGACGATTAGGGGGG-ACGGAGGGGGTGTGCACACATGATGTACGATGGGTG
1573050 CTGATACTTTGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
65 CTGATAC-TTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
1573114 ATGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
129 AAGAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
1573179 TTTTTCAAATGGTCACAAAATCCTGTAAACTTTGAGTGTTTAGCTGAATTTTTTTATGCATGCCA
194 TTTTTCAAATGGTCACAAAATCCTGTAAACTTCGAGTGTTTAGCTGAATTTTTTTATGCATGCCA
** * * *
1573244 AAAAAGGTACAAGGATCACGTCTACCAAGTTTGTGGCCAGAACTCCATCTGAAAAAATTTTAAAA
259 AAAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAA
* *
1573309 AAATC-CTGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCAATGA
324 AAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGA
* *
1573373 AACTTCACATGAAGGCTTAAGGGACCATTGTAGGAATTTAAAAGCCATAAAAATGGCATTGGCAC
388 AACTTCACATGAAGGCTTAAGGGACCATTGTACGAATTTAAAAGCCATAAAAATGGCATTCGCAC
* *
1573438 GGCAGAAATATGAAGGTGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGTCTATCCC
453 GGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGTCCATCCC
* * * * *
1573503 GTCTCTCTGGCCGGGGTAGTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAAGCATAC
518 GCCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCATTTCATCGATTGGCTTAAGCACAC
* * *
1573568 AGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTT
583 AGAGTTCAGTCCCAGTCTAAGATCAAACCGGACCGAGGGTT
1573609 ACGGCAACAG
Statistics
Matches: 562, Mismatches: 55, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
706 75 0.13
709 3 0.01
710 447 0.80
711 37 0.07
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (707 bp):
GGCATTGGCGTTCCGACGATTAGGGGGGACGGAGGGGGTGTGCACACATGATGTACGATGGGTGC
TGATACTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCAATTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCCTGTAAACTTCGAGTGTTTAGCTGAATTTTTTTATGCATGCCAAA
AAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAA
ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCAATGAAAC
TTCACATGAAGGCTTAAGGGACCATTGTACGAATTTAAAAGCCATAAAAATGGCATTCGCACGGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGTCCATCCCGCC
TCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCCGCTCATTTCATCGATTGGCTTAAGCACACAGA
GTTCAGTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGGTTCACTTGTTGGGCTCAGGCAT
GTGTTGGTGCCGTATTTTTTTTCATCTGGGGCACCATCGCCGGAGAAACTGACTGAC
Found at i:1573750 original size:26 final size:26
Alignment explanation
Indices: 1573721--1573773 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1573711 GTTGACTTAG
*
1573721 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1573747 GCATACAGAGTTCCTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1573773 G
1 G
1573774 ATCAGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1573875 original size:185 final size:185
Alignment explanation
Indices: 1573559--1573960 Score: 599
Period size: 185 Copynumber: 2.2 Consensus size: 185
1573549 TCGATTGGCT
1573559 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTACGGCAACAGGATCG
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTACGGCAACAGGATCG
* ** **
1573624 GTAGCACGTAAAGGGGGACCCGACTGATTCCCCGCTTGTGCATCCTACACCTCTGGCCGACTGAG
66 GCAGCACACAAAGGGGGACCCGACTGATTCCCCGCTTACGCATCCTACACCTCTGGCCGACTGAG
* *
1573689 CGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
131 CGCCCGCACGCTCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
1573744 TAAGCATACAGAGTTCCTTCCCAGTCTAAGATCAGATTGGATCGAGGGTTGCGGTAGCAGGATCG
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTACGGCAACAGGATCG
* * * * *
1573809 GCAGCACACAAAGGGGGACCCGACTGA-TCCTCGGCTTACGCATCTTGCCCCTCTGGCCGGCTGA
66 GCAGCACACAAAGGGGGACCCGACTGATTCC-CCGCTTACGCATCCTACACCTCTGGCCGACTGA
* *
1573873 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
130 GCGCCCGCACGCTCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
*
1573929 TAAGCATACGGAGTTCATTCCCAGTCTAAGAT
1 TAAGCATACAGAGTTCATTCCCAGTCTAAGAT
1573961 TGAACTAGAC
Statistics
Matches: 194, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
184 3 0.02
185 191 0.98
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23
Consensus pattern (185 bp):
TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAATCGGATCGAGGGTTACGGCAACAGGATCG
GCAGCACACAAAGGGGGACCCGACTGATTCCCCGCTTACGCATCCTACACCTCTGGCCGACTGAG
CGCCCGCACGCTCATTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
Found at i:1573936 original size:26 final size:26
Alignment explanation
Indices: 1573906--1573958 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1573896 GTTGACTTAG
*
1573906 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1573932 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1573958 G
1 G
1573959 ATTGAACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1574936 original size:159 final size:159
Alignment explanation
Indices: 1574623--1575004 Score: 475
Period size: 159 Copynumber: 2.4 Consensus size: 159
1574613 AGCTCATTTT
* * * * *
1574623 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCTGATCGGATC-AGGGTTGCGG
1 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGG
* * * * *
1574687 CAGCAGGATCGACGGCACACAGAGGGGGACCCGACTGATCCTCGACTTGTGCATCCTGCCCCTCT
66 CAGCAGGATCGACAGCACACAGAGAGGAACCCGACCGATCCCCGACTTGTGCATCCTGCCCCTCT
* * * *
1574752 GGTCGGTTGAGCGCCTGCCCACTTGTTTC
131 GGCCAGCTGAGCGACTGCCCACTTGTTTC
1574781 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGG
1 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGG
* * * ** *
1574846 TAGCAGGATCGACAGCACGCTGAGAGGAACTGGGCCGATCCCCCG-CTTGTGCATCCTGCCCCTC
66 CAGCAGGATCGACAGCACACAGAGAGGAACCCGACCGAT-CCCCGACTTGTGCATCCTGCCCCTC
*
1574910 TGGCCAGCTGAGC-ACT-CACACGCTTGTTTC
130 TGGCCAGCTGAGCGACTGC-C-CACTTGTTTC
* * * * *
1574940 GTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGG
1 GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGG
1575005 GTGCACATGC
Statistics
Matches: 194, Mismatches: 26, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
157 1 0.01
158 53 0.27
159 136 0.70
160 4 0.02
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (159 bp):
GTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGG
CAGCAGGATCGACAGCACACAGAGAGGAACCCGACCGATCCCCGACTTGTGCATCCTGCCCCTCT
GGCCAGCTGAGCGACTGCCCACTTGTTTC
Found at i:1576705 original size:899 final size:897
Alignment explanation
Indices: 1574961--1586789 Score: 12960
Period size: 899 Copynumber: 13.5 Consensus size: 897
1574951 TAGGCATACA
* * *
1574961 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGGTGCACATGCTAGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGC
** * * *
1575026 ATGTGCTGGTGCTACATTTTTTTTCACTCGGGGCACAATCGTCGGAGCATCGCCAGAGAACCTGA
66 ATGTGCTGGTGCCGCATTTTTTTTCGCTC-GGGCACCATCG-CGGAGCATCGCCGGAGAACCTGA
* ** * *
1575091 CCGATGGCATTGGGGTTCC-GACGATTTAGGGGGGTCGGGGGGTGTGCGCAGATGATGTGCGATG
129 CTGGCGGCATTGGGGTTCCAG-CGA-TT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* *
1575155 GGTGCTGGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * *
1575220 CTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGGT-TCCATTAAAGTGTCTAAAATGGGG
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA-GTAGCCATTAAAGTGTCTGAAATGGGG
1575284 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
320 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *** **
1575349 TGCTAACAAAAATACAAGGATCACATCTACCAAGTTTGTTTCCAAAACCTGGTTCTGAAAAAATT
385 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCTGAAAAAATT
** * * *
1575414 TTAAAAAAATCCTGAACCGTAAAAAGTTTCCAAAATCGTTAAAAATAGAGAACGAGTCATCTTGC
449 TTAAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
1575479 CATGAAACTTCACATGAAGGCTTAAGAGA-CATTGTA-GAATTTACAAG-CATAAAAATGGCAAT
514 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-AT
* * *
1575541 TGGCATGG-AAAAATATGAAGATTTGCCTAAACCCACCTACGACCCTATCGATCCACGGCTTGCG
578 TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** * * * * * * * **
1575605 CATCTTGCCTCT-TTGCCGACGTAGTACCCGTCCACCGGCCCGATCGTTTCATCAATTGGCTTAG
643 CATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
1575669 GCATATGGAGTTCATTCCCAGTCTAGGATCAGACCAAACTGAGGGTTGCGGTCGCAAGATCGGTA
708 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCA
* * * *
1575734 GCACACAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCT-ACCCTCTGGCCGGCTGAGCGC
773 GCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * *
1575798 CTGCACGCTCCTTTCATGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGC
838 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-C
1575859 GAAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAG
1 G-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAG
* * *
1575924 CATGTGCTGGTGCCACATTTTTTTTCACTCGGGCCACCATCGCCGGAGCATCACCGGAGAACCTG
65 CATGTGCTGGTGCCGCATTTTTTTTCGCTCGGG-CACCATCG-CGGAGCATCGCCGGAGAACCTG
* * * * *
1575989 ACTGGCGGCATTGGGGATACACCGATTAGAGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGG
128 ACTGGCGGCATTGGGGTTCCAGCGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
*
1576054 GTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACTTCGAGAACTCACACCCCC
192 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
1576118 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
1576183 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
322 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
1576248 CCAAAAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
387 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * *
1576313 AAAAAATCCTGAACCGT-AAAAGTTTTAAAAACCGTAAAAAATAGAAAACAAGTCGTCTTGCCAT
452 AAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
1576377 GAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
517 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
**
1576442 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTACTTGCGCATC
582 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
1576507 TCGCCTCTCTGGCCGACATAGTACCAGTCCGCCCGCCCGATCGTTTCATCGGTTGGCTTAGGCAT
647 CCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * ** * ** *
1576572 ACGGAGTTCATTCCTAGTCTAGGATCAGATCAGACCTAGGTTTGTAGTAGCAGTATCAACAGCAT
712 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* * * *
1576637 GCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCG-CCCTCTGACCGACTGAGCGCCCGC
777 GCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
1576701 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGC
842 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-C
* * * * * *
1576758 GGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCCGGTGCACATGCTGGGCTTGCG
1 -GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAG
* * * *
1576823 CATGTGCTGGTGCCGCATTTTTTTTCACCCGGGCCACCATCGTCGGAGCATCGCCAGAGAACCTA
65 CATGTGCTGGTGCCGCATTTTTTTTCGCTCGGG-CACCATCG-CGGAGCATCGCCGGAGAACCTG
* * * * * * *
1576888 ACTGGCGACATTGGGGATACGGCGATTGGAGGGACCGGGGGGGTGTGTGCACATGATGTGTGATG
128 ACTGGCGGCATTGGGGTTCCAGCGATTGG-GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATG
* *
1576953 GGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
1577018 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTAAAATGGGGA
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
1577083 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
321 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
** * *
1577148 GCCAACAAAAATACAAGGATCATATCTACCAAGTTTGGGGCTAAAAATCCTTCTGAAAAAATTTT
386 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
* * *
1577213 AAAAAAATACC-GAACCGTAAAAAGTTTTAAAAA-CTATGAAAAATAAAAAACAAGTCGTCTTGC
451 AAAAAAAT-CCTGAACCGTAAAAAGTTTTAAAAATC-GTGAAAAATAGAAAACGAGTCGTCTTGC
* *
1577276 CATGAAACTTCACATGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATT
514 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
1577341 GGCTTGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
579 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
1577406 ATCCCGCCTCTATGGCCGACATAGTGCTCGCCCGCCCACCCGCTCTTTTCGTCGGTTGGTTTAAG
644 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * * * * * *
1577471 CATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGGGTTGTGGCAGTAGGATCGACAG
709 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAG
* * * ** * * **
1577536 CATGCAGAGGGGGACCCGGCTGATCCTTGA-TGTGTGCATCATGCCCCTCTGGCCGGCTGAGTAC
774 CACGCAGAGGGGGACCCGACCGATCCCCGACT-TGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * * **
1577600 CCGTATGCTCTTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATC
838 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATC
* * *
1577659 G-G---A----C---C--AGAT----------TGAGGGTTGTGGGTGCACATGTTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGC
* * * * *
1577701 ATGTGTTGGTGCCACA-TTTTTATCGCCCGGG-------GC--ACCATCGCCGGAGAACCTGA-T
66 ATGTGCTGGTGCCGCATTTTTTTTCGCTCGGGCACCATCGCGGAGCATCGCCGGAGAACCTGACT
* * *
1577755 CGGCGGCATTGGGGTTTC-GACGATTGGAGGGCACGGGGGGGTGTGTGCACATGATGTGCGATGG
131 -GGCGGCATTGGGGTTCCAG-CGATTGGGGGGC-C-GGGGGGTGTGCGCACATGATGTGCGATGG
* * *
1577819 GTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAATTCACACCCCC
192 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
1577884 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTGTAGCCATTAAAGTGTCTGAAATGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
1577949 ACTTTTTTCAACTGGTCACAAAATCCTATACACTTCGAG----T---TG---------G-GCATG
322 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
1577997 CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTA
387 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * * * *
1578062 AAAAAAT-CTACAATCGTAAAAAGTTTTGAAAATCGTGAAGAATAGAAAACGAGTCATCTTGCCA
452 AAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
1578126 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
516 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
1578191 CATTGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTTCGCAT
581 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * *
1578256 CCCGCCTCTTTGGCTGGCATAGTGCCCGCCTGCCCTCCCGCTCATTTCGTCGGTTGGCTTAGGCA
646 CCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * * * * *
1578321 TACGAAGTTCATTCCCAGTCTATGATGGGATC-GAACCGAGGGTTGTGGCAGCAGTATCGGTAGC
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGTAGCAGGATCGGCAGC
* * * * * *
1578385 ACG-ATGAGGGGGACTCGATCGATCCCCGGCTTGTGCATCTTGCCCCTCTGACCGGCTGA--GCC
775 ACGCA-GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * *
1578447 CGTACGCTCATTTCGTGGGTTGAC-T-----TA--G-G--------CA---T-A--AT-
839 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATC
* * *
1578482 GAGTTCATTCCCAGTCTTAGATCGGACCGGACCGAGGGTTGCAGGTGCATATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGC
** * * * * *
1578547 ATGTGCTGGTGCCTTATTTTTTTTTGCCCGGGGCACCATCGTCGGGGCATCGTCGGAGAACTTGA
66 ATGTGCTGGTGCCGCATTTTTTTTCGCTC-GGGCACCATCG-CGGAGCATCGCCGGAGAACCTGA
* * *
1578612 CCGGCGGCATTGGGGTTCC-GACGATTGGGGGGGCCGGGAGGTGTGCGCACATGATGTGTGATGG
129 CTGGCGGCATTGGGGTTCCAG-CGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
1578676 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
192 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
1578741 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGAGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
1578806 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
322 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * *
1578871 GCAACAAAAATGCAAGGCTCACGTCTGCCAAGTTTGGGCCCAAAACTCCTTCTGAAAAAATTTTC
387 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * *
1578936 AAAAAA---T---CC-TAAAATGTTTTAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTGCCAT
452 AAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
1578994 GAAACATCACATGAA-GCATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
517 GAAACTTCACATGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
1579058 CATGGCAGAAATATTAATATGTGCCTAAACCCACC-ACCACCCTATCGATCCACGGCTTGCGCAT
581 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
1579122 CCCACCTCTCTAGCCGGCGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
646 CCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * * * *
1579187 TATGGAGTTCATTCCCAGTCTAGGATTAGACTAGATCAAGGGTTGTGGTAGCAGGATCGGTAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
*** * * * * * * *
1579252 CATTGAGGGGGACCCGACTGATCCCCAACTTGCGCATCCTGGCCCTCCGACCGGCTCAGCACCCG
776 CGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
1579317 CACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAACCGTAC
841 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-C
** * * ** * * *
1579375 GGAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGTAGGTGCACATGCTGGGTTAGGG
1 -GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAG
* * *
1579440 CATGTGCTGGTGCCGTATTTTTTTTCGCTCAGGGCACCAT--C---G--T---TGGACAACCTGA
65 CATGTGCTGGTGCCGCATTTTTTTTCGCTC-GGGCACCATCGCGGAGCATCGCCGGAGAACCTGA
* * ** * * *
1579495 CCGGTGGCATTGGGGTTCTGGCGATTGGGGGG-TGGGGGGTGTGCGCAAATGATATGCGATGGGT
129 CTGGCGGCATTGGGGTTCCAGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
1579559 ACTGGTACTTGGCCCTATTTATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCACT
194 GCTGGTACTTGGCCCT-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
1579624 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
1579689 TTTTTTTCAAATGGTCAC-AAA--C--T----TT-GAGTTTTTAGCTGAATTTTTTTGTGCATGC
323 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * * * **
1579744 CAAAAAAAAAAACAAGGATCATGTCTACCAAGTTCGGGGCCAAAAATCCTTCTAAAAAAATTAAA
388 C-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT-TT
* ** * * **
1579809 AAAAAAAACCCAAATCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTTTTCTTGCCA
451 AAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
1579874 AGAAACTTCACATGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGTATTGG
516 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
1579939 GATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCATGGCTTGCACAT
581 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * * * *
1580004 CCCGTCTCTCTGGCAGACGAAGTGCTCGCTCGCCCGCTCGCTCGTTTCGTCGATTGGCTTAGGCA
646 CCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * * *
1580069 TACAGAGTTTATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGATTGACAGCA
711 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
** * * * * * **
1580134 CGTTGAGGGGGACCCTACCGAT-CCCTAGCTTGCACATCCTACCCCTCTAGCCAACTGAGCGCCC
776 CGCAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
1580198 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATC
840 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATC
1580255 G-G---A---CC-G-----GAT----------CGAGGGTTGCGGGTGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGC
*
1580297 ATGTGCTGGTGCCGTA-TTTTTTT---TC--G---C--C-C---G-A-CG-C-----ACC-G--T
66 ATGTGCTGGTGCCGCATTTTTTTTCGCTCGGGCACCATCGCGGAGCATCGCCGGAGAACCTGACT
* * * * * * * *
1580336 --CAGCATTGAGGTT-CAGGAGATTGGGCGACC-AGGGGTGTGCGCACTTGATGTGCGATGGTTG
131 GGCGGCATTGGGGTTCCA-GCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
1580397 CTGGTACTTGGCCCTTATATTGGCCCCC-ATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
** * * *
1580460 AAGAGTGTTTGAGATTTTACAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGAGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
1580525 CTTTTT-AAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCC
325 -TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* *
1580589 AACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACGCCTTCTGAAAAAATTTTAAA
389 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * * *
1580654 AATATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
454 AAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * ** *
1580719 AAATTCAAATGAAGGCTTAAAGGACTGTTGTATGAATTTTCTAA-CCATAAAAATGGCATTGGCA
519 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCA
* *
1580783 TGGCAGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCC
583 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
1580848 CGCCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGTTTGGCTTAGGCATA
648 CGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * ** * * * *
1580913 AGGAGTTCATTCCTGGTCTAAGACCAGACTGGACCGA--G-TGCGGTAACAGGATCAGTAGCACA
713 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACG
* * * * * *
1580975 CTGAGGGTGACCCGACCGATCCCCGGCTTACGCATCTTGCCCCTCTGGCCGGCTGAACGCCCGCA
778 CAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
1581040 CGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
843 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-C
* * * * *
1581096 GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGTTGCACATGCTGGGCTTGCG
1 -GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAG
* * * *
1581161 CATATGCTGGTGTCGCA-TTATTTTCGCTCGAGG---CA-C-C--A--A-CGTCGGAGAACCTGA
65 CATGTGCTGGTGCCGCATTTTTTTTCGCTCG-GGCACCATCGCGGAGCATCGCCGGAGAACCTGA
* * *
1581215 CCT-GCGGCATTGGGGTTTCGGCGATT-----G--GGGGGGTGTGCGCACGTGATGTGCGATGGG
129 -CTGGCGGCATTGGGGTTCCAGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
** * *
1581272 TGCTGGTACTTATCCCTTATATTGGCCCCCTATCCCTCATCAAACTTGGAGAACTCACACCCCCT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
1581337 TAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCCGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
1581402 C-TTTTTCAAATTGTCACAAAATCCAGTACACTTCGAGTTTCTAGCTGAATTTTTTTATGCATGC
323 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
** * * *
1581466 CAA-AAAAATGTAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTTA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* * ** * *
1581530 AAAAATCTTGAATCGTAAAAAGTTTTGCAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTG
453 AAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
1581595 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCA
518 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
1581660 TGACA-AATATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
583 TGGCAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
1581724 CCGCTTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCTCGCTCGTTTCGTCGGTTGGCTTAAGCAT
647 CCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * * *
1581789 AAGGAGTTCATTCCCAGTCTAAGAATGA-ACCAGACTGAGGGTTACGGTACCAAGATTGGCAGCA
712 ACGGAGTTCATTCCCAGTCTAAG-ATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
* * * * ** * * **
1581853 CACTGAGAGGGATCCGACCGATCCTTGACTTGCGCATCTTGACCCTCTGGCCAACTGAGCGCCCG
776 CGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
1581918 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
841 CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-C
1581976 GGAGTTCATTCCCAGTTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGG
1 -GAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G-----GA-C----CGGACCGAGGG
* * * *
1582041 TTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTA-TTTTTTTCGCTCATGGCACCA
39 TTGCGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTTTTCGCTC-GGGCACCA
* *
1582105 T--C---G--T---CGGAGAACCTGACTGGCGGCATTAGGGTTCCGGCGATT-----G--GGGGG
103 TCGCGGAGCATCGCCGGAGAACCTGACTGGCGGCATTGGGGTTCCAGCGATTGGGGGGCCGGGGG
* *
1582153 GTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAA
168 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* *
1582218 CAAACCTCGAGAACTCACACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGC
233 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
1582283 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC---A------A-ACTTCGAGTT
298 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
* *
1582338 TTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCC
363 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * *
1582403 AAAACACCTTCTGAAAAAATTTTAAAAAAAT-CTCGAACTGTAAAAAGTTTCAAAAACCGTGAAA
428 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCGTGAAA
1582467 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
492 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
* * *
1582532 TACAGGCCATAAAAATGGCATTGGCAT-GAAAAGAATATGAAGATGTGCCTAAACCCACCTACCA
557 TACAAGCCATAAAAATGGCATTGGCATGGCAGA-AATATGAAGATGTGCCTAAACCCACCTACCA
* * *
1582596 -CCTATTGATCCACGGCTTGCGCATCCCACCTCTCTGGCCGACGTAGTGCACGCCCGCCCGCCCG
621 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
* * * *
1582660 CTCGTTTCGTCGATTTGCGTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAG
686 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * *
1582725 GGTTACAGCAGTAGGATCGGCAGCACGCAGAGGGGGAACCCGACCGATCCCC-AGCTTGCGCATC
751 GGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGG-ACCCGACCGATCCCCGA-CTTGCGCATC
* ** * *
1582789 CTGCCCCTCTGG-CTGCTGAGCGCCCAAACGCTCGTTTCGA-AGGTTGACTTAGGCGTACGGAGT
814 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC-ATGGGTTGACTTAGGCATACGGAGT
1582852 TCATTCCCAGTCTAAGCATAC
878 TCATTCCCAGTCTAAGCAT-C
* * * *
1582873 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGAGTTACGGGTGCACATGTTGGGCTCGAG
1 -GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAG
* * * *
1582938 CATGTGCTGGTGCCGCA-TTTTTTTCGC-CTGAGCCACCATCGCCTGAGCATCGCCAGAGAACTT
65 CATGTGCTGGTGCCGCATTTTTTTTCGCTC-G-GGCACCATCG-CGGAGCATCGCCGGAGAACCT
* * *
1583001 GA-TCGACGGCATTGGGGTTCC-GACAATTGGGGGGGCCGAGGGGAGGTGTGCGCACAGGATGTG
127 GACT-GGCGGCATTGGGGTTCCAG-CGATT-GGGGGGCC--GGGG-GGTGTGCGCACATGATGTG
* * *
1583064 TGATGGGTGCTGGTACTTGGCCCTGATATTGG-CCCCTATCCCTCTATCAAACCTCAAGAACTCA
186 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTCA
*
1583128 CACCCCCTTAAAGAGC-TTTGAGGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTGCTGA
250 CACCCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGA
1583192 AATGGGGACACTTTTTTC-AATGGTCAC-AAA--C--T----TT-GAGTTTTTTAGCTGAATTTT
313 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG-TTTTTAGCTGAATTTT
*
1583246 TTTGTGCATGCCAAC--AAATACAAGGATCATGTCTACCAAGTTTGGGGGGCCCAAAA-TCCTTC
377 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT--GGGG-CCAAAACTCCTTC
* *
1583308 TGAAAAAATTTTTAAAAAAT-CTCGAACCGTAAAAAAGTTTCAAAAA-CTGTG-AAAATAGAAAA
439 TGAAAAAATTTTAAAAAAATCCT-GAACCGT-AAAAAGTTTTAAAAATC-GTGAAAAATAGAAAA
* * *
1583370 CGAGTCATCTTG-CATGAAACTTCACAAGAAGGCTTAA-GGACCATTGCATGAA-TTACAAGCCA
501 CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* * *
1583432 TAAAAATGGCATTGGGATGGCA-AAATATGAAGATGTGCCTAAACCCACATACCACCCTACCGAT
566 TAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * ** * *
1583496 CCATGACTTGCGCATCCCGCCTCTTTGGCCGACGTAGTGCCTGCCTTCCTGCCTGCTCGTTTCGT
631 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGT
* * ** *
1583561 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCGGTA
696 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTA
*
1583626 GCAGGAT----------------------C-A--G-T--CAG-CTTGCGCATCCTGCCCCTCTGG
761 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGG
* * * * * * *
1583662 CTGGCTGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTGATTCCTAGTCT
826 CCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
1583727 AAGCATAC
891 AAGCAT-C
* * * *
1583735 GGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGG
1 -GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAG
* * * * * *
1583800 CATGTGCTAGTGCCGTATTTTTTTTTGCCCGAGGCACCATCGTCGGAGCATCACCGTAGAACCTG
65 CATGTGCTGGTGCCGCATTTTTTTTCGCTCG-GGCACCATCG-CGGAGCATCGCCGGAGAACCTG
* * ** *
1583865 ACTGACGACATTGGGGTTCTGGCGATTGGGGGGGCCTGGGGGGCTGTGCGCACATAATGTGCGAT
128 ACTGGCGGCATTGGGGTTCCAGCGATT-GGGGGGCC-GGGGGG-TGTGCGCACATGATGTGCGAT
* *
1583930 GGGTGTTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
190 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
1583995 CCTTAAAAAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
255 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
1584060 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTGTTGT-CA
320 ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
1584124 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
385 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTT
* ** * * *
1584189 TAAAAGAA-CCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCC
450 TAAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
1584253 AAGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTG
515 ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * *
1584318 GGATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCGACGGCTTGCGCA
580 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * ** * * *
1584383 TCCCGCCTCTCTGGTCGGCGTAATGCCCGCCCACCTACCTGCTCGTTTCGTTGGTTGGCATAGGC
645 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* ** * * * * * *
1584448 ATACGGAGTTCATTCCCAGTCTAAGACCAGACTGGACCAAGGGTTACGGCAGTACGATTGGCAGC
710 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
** * * * *
1584513 -CTGTTGAGGGGGACCC-AGCCGATCCCCTG-CTTGCGCATCCTGCTCCTCTAGCCGACTGAGCA
775 AC-GCAGAGGGGGACCCGA-CCGATCCCC-GACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* * *
1584575 CCTGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-T-----TC----CA--
837 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATC
* ** ** *
1584624 -AG-----T--C---C-AAGATCGGACTGGACCGAGGGTTGTAGGTGCGTATGCTGCGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGC
* * * * *
1584677 ATGTGCTGGTGCCACATTCTTTTTCGC-CCGG-----T-GC--ACCATCGCCGGAGAACCTAACT
66 ATGTGCTGGTGCCGCATTTTTTTTCGCTCGGGCACCATCGCGGAGCATCGCCGGAGAACCTGACT
* * * *
1584733 GGCGGTATTGGGGTTCCAACGATTCGGGGGGGCCAGGGGGTGTGTGCACATGATGTGCGATGGGT
131 GGCGGCATTGGGGTTCCAGCGATT--GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
*
1584798 GTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
1584863 AAAAAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
1584928 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGA-TTTTTGAGCAGAATTTTTTTGTACATGC
324 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT-AGCTGAATTTTTTTGTGCATGC
* * *
1584992 CAACAAAAATACAAGGATCACG-CATACCAAGTTTGGGTCCAGAACTCATTCTGAAAAAATTTTA
388 CAACAAAAATACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
* * *
1585056 AAAAAAT-CTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAATGAGTTGTCTTGCCA
452 AAAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
1585120 TGAAACTTCACAAGAAGGCTTAAGCGACCATTGTGTGAATTTACAAGCCATAAAAAATGGCATTG
516 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTG
* * *
1585185 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATTGATCCACGACTTGCGCA
580 GCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** * * *
1585250 TCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCGCCTTCCTGCTCGTTTCTTCGATTGGCTTAGGC
645 TCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
1585315 ATATGGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAGCAGGATCGACAGC
710 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
** * *
1585380 ACGTTGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTG-CCC-CT--CCGGCTGAGCGCCC
775 ACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
* *
1585441 GCACACTCGTTTCGTGGGTTGACTTAGGCATAC--AG---------AG--T-----TC
840 GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATC
** * * *
1585481 -A-TTC---CCC-GTCTAAGATCGGAGGGGATCGAGGGTTGCGGGGGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGC
* * * *
1585540 ATGTGCTAGTGCTGCATTTTTTTT---T---GC-CCA--G-GGCACCATCACCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTTTTCGCTCGGGCACCATCGCGG-AGCATCGCCGGAGAACCTGAC
*** * * * *
1585595 CAACGGCATTGAGGTTCCGGCGATTGGGGGG--GTGGGGGTGTGCGCACATTATGTGTGATGGGT
130 TGGCGGCATTGGGGTTCCAGCGATTGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGT
* *
1585658 GCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
1585723 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTTTGAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
1585788 TTTTTTCAAATGGTCAC-AAA--C--T----TT-GAGTTTTTAGCTGAATTTTTTTGTGCATGGC
324 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-GC
* * * * *
1585843 AAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATATTAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* * ** * *
1585908 AAAAAT-CTCAAACCGTAAAAAGTTTCAAAAATCAAGAAAAATAGAAAATGAGTTGTCTTGCCAT
453 AAAAATCCT-GAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
**
1585972 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAATTTGGCATTGGC
517 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
1586037 ATGGCGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCATC
582 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
*** * * * *
1586102 CCGTAACTCTGGCCGGCGTAGTGCCCGCCTGCTCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAT
647 CCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * ** * ** * *
1586167 ACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATGGAGGGTTACGACAGTAGGATTGGCAGCAC
712 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
** * * * * * *
1586232 GTTGAGGGGGACCCGATCAATCCCCGGCTTGCGCATTCTGCCCCTCTGGCTGGCTGAGCGCCCGT
777 GCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
*
1586297 ACACTCGTTTCATGGGTTGACTTAGGCATAC--A----A-----AG--T-----T-
842 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATC
* * * * *
1586334 -A----ATTCCCAGTCTAAGATCAGAGCGGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGC
* * * *
1586394 TTGTGCTGGTGCCGCATCTTTTTTT-GCACGGGCACTATCGTCGGAGCATCGTCGGAGAACCTGA
66 ATGTGCTGGTGCCGCAT-TTTTTTTCGCTCGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGA
** * * * * * *
1586458 CCAGCGGCAATGGGGTTCCGGCAATTGGAGGGGCCGGGGGGTGGGGTGTACACACATGATGCGCA
129 CTGGCGGCATTGGGGTTCCAGCGATTGG-GGGGCCGGGGGGT---GTG--CGCACATGATGTGCG
* *
1586523 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTGATCAAACCTCGAGAGCTCACAC
188 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
1586588 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-TTGCCAGTAGCCATTAAAGTGTTTGGAATGG
253 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
1586652 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
318 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
1586717 CATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAAC
383 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
1586782 TTTAAAAA
448 TTTAAAAA
1586790 TTCTCGGGCA
Statistics
Matches: 9425, Mismatches: 1088, Indels: 855
0.83 0.10 0.08
Matches are distributed among these distances:
823 1 0.00
824 3 0.00
825 1 0.00
826 1 0.00
827 1 0.00
829 2 0.00
831 1 0.00
834 75 0.01
835 34 0.00
836 16 0.00
837 61 0.01
838 1 0.00
839 116 0.01
840 8 0.00
841 2 0.00
842 261 0.03
843 57 0.01
844 30 0.00
845 3 0.00
846 67 0.01
847 12 0.00
848 395 0.04
849 5 0.00
850 238 0.03
851 173 0.02
852 5 0.00
853 4 0.00
854 111 0.01
855 19 0.00
856 45 0.00
857 188 0.02
858 43 0.00
859 9 0.00
860 169 0.02
861 59 0.01
862 258 0.03
863 229 0.02
864 253 0.03
865 396 0.04
866 298 0.03
867 354 0.04
868 50 0.01
869 38 0.00
870 111 0.01
871 212 0.02
872 99 0.01
873 209 0.02
874 78 0.01
875 4 0.00
876 80 0.01
877 411 0.04
878 85 0.01
879 134 0.01
880 172 0.02
881 185 0.02
882 391 0.04
883 47 0.00
884 3 0.00
885 3 0.00
886 3 0.00
887 6 0.00
888 5 0.00
889 4 0.00
890 30 0.00
891 152 0.02
892 69 0.01
893 151 0.02
894 203 0.02
895 94 0.01
896 49 0.01
897 473 0.05
898 377 0.04
899 492 0.05
900 55 0.01
901 244 0.03
902 372 0.04
903 67 0.01
904 1 0.00
905 2 0.00
906 242 0.03
907 15 0.00
909 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGC
ATGTGCTGGTGCCGCATTTTTTTTCGCTCGGGCACCATCGCGGAGCATCGCCGGAGAACCTGACT
GGCGGCATTGGGGTTCCAGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAA
AATCCTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGC
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAG
AGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATC
Found at i:1576760 original size:26 final size:26
Alignment explanation
Indices: 1576726--1576778 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1576716 GTTGACTTAG
1576726 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1576752 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1576778 G
1 G
1576779 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1580049 original size:882 final size:880
Alignment explanation
Indices: 1578482--1586789 Score: 8944
Period size: 882 Copynumber: 9.5 Consensus size: 880
1578472 TAGGCATAAT
* * * * * *
1578482 GAGTTCATTCCCAGTCTTAGATCGGACCGGACCGAGGGTTGCAGGTGCATATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGC
** * * *
1578547 ATGTGCTGGTGCCTTATTTTTTTTTGCCCGGGGCACCATCGTCGGGGCATCGTCGGAGAACTTGA
66 ATGTGCTGGTGCCGCATTTTTTTTCG-CCAGGG---CA----C----CATCGTCGGAGAACCTGA
* *
1578612 CCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGAGGTGTGCGCACATGATGTGTGATGGG
119 CCGGCGGCATTGGGGTTCCGGCGATTGGGGGGG--GGG-GGTGTGCGCACATGATGTGCGATGGG
1578677 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
181 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
1578742 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGAGACA
246 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
1578807 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGG
311 CTTTTTTCAAATGGTCACAAAA-CC-GT--A-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * *
1578872 CAACAAAAATGCAAGGCTCACGTCTGCCAAGTTTGGGCCCAAAACTCCTTCTGAAAAAATTTTCA
371 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* * * *
1578937 AAAAA--T----CC-TAAAATGTTTTAAAAATCTTGAAAAATAGAAAATGAGTCGTCTTGCCATG
436 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
1578995 AAACATCACATGAA-GCATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
501 AAACTTCACATGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
1579059 ATGGCAGAAATATTAATATGTGCCTAAACCCACC-ACCACCCTATCGATCCACGGCTTGCGCATC
565 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
1579123 CCACCTCTCTAGCCGGCGTAGTGCCCGCCCTCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
630 CCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCAT
* * * ** * * * *
1579188 ATGGAGTTCATTCCCAGTCTAGGATTAGACTAGATCAAGGGTTGTGGTAGCAGGATCGGTAGCAC
694 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCAC
* * ** * * * * *
1579253 ATTGAGGGGGACCCGACTGATCCCCAACTTGCGCATCCTGGCCCTCCGACCGGCTCAGCACCCGC
759 GTTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
* * *
1579318 ACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAACCGTACG
824 ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-TACG
* * * *
1579376 GAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGTAGGTGCACATGCTGGGTTAGGGC
1 GAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGC
* * * *
1579441 ATGTGCTGGTGCCGTATTTTTTTTCGCTCAGGGCACCATCGTTGGACAACCTGACCGGTGGCATT
66 ATGTGCTGGTGCCGCATTTTTTTTCGC-CAGGGCACCATCGTCGGAGAACCTGACCGGCGGCATT
* * * *
1579506 GGGGTTCTGGCGATTGGGGGGTGGGGGGTGTGCGCAAATGATATGCGATGGGTACTGGTACTTGG
130 GGGGTTCCGGCGATTGGGGGG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* * *
1579571 CCCTATTTATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTT
194 CCCT-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
1579636 GAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAAT
258 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
1579701 GGTCAC-AAA-C-T-TT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAAAAACAAGG
323 GGTCACAAAACCGTATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGG
* * * * ** * * * *
1579761 ATCATGTCTACCAAGTTCGGGGCCAAAAATCCTTCTAAAAAAATTAAAAAAAAAAACCCAAATCG
387 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT-TTAAAAAAATCTCGAACCG
* * ** *
1579826 TAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTTTTCTTGCCAAGAAACTTCACATGAAG
451 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
* * *
1579891 GCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGTATTGGGATGGCAGAAATATGAA
516 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAA
* * * * * *
1579956 GATGTGCCTAAACCCACCTACCACGCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCAGA
581 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGG
* * * * * *
1580021 CGAAGTGCTCGCTCGCCCGCTCGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTTATTCCCA
646 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCA
** * * *
1580086 GTCTAAGATTGGACCGGACCGAGGGTTGCGGTAGCAGGATTGACAGCACGTTGAGGGGGACCCTA
710 GTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTTGAGGGGGACCCGA
** * * * **
1580151 CCGATCCCTAGCTTGCACATCCTACCCCTCTAGCCAACTGAGCGCCCGCACGCTCGTTTCATGGG
775 CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
1580216 TTGACTTAGGCATACGGAGTTCATTCCCAG--T---CTA--
840 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTACG
* *
1580250 -AG---A-T--C-G-----GA-C---C-GGATCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGC
* * * *
1580297 ATGTGCTGGTGCCGTATTTTTTTT---C---G--CC--CGAC---G---C--ACCGTCAGCATTG
66 ATGTGCTGGTGCCGCATTTTTTTTCGCCAGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTG
* * * **** * *
1580344 AGGTTCAGGAGATTGGGCGACCAGGGGTGTGCGCACTTGATGTGCGATGGTTGCTGGTACTTGGC
131 GGGTTCCGGCGATTGGG-GGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* **
1580409 CCTTATATTGGCCCCC-ATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTAAAGAGTGTTTGA
195 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
1580472 GATTTTACAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGAGGACACTCTTTTT-AAATG
260 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAATG
* *
1580536 GTCACAAAATCCTATACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACA
324 GTCACAAAA-CC-GT--A-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * *
1580601 AGGATCACGTCTACCAACTTTGGGGCCAAAACGCCTTCTGAAAAAATTTTAAAAATATCCCGAAC
384 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAAC
* * * *
1580666 CATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAATTCAAATGA
449 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
* ** * *
1580731 AGGCTTAAAGGACTGTTGTATGAATTTTCTAA-CCATAAAAATGGCATTGGCATGGCAGAAATTT
514 AGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGCATTGGCATGGCAGAAATAT
*
1580795 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGC
578 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGC
* *
1580860 CGGCGTAGCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGTTTGGCTTAGGCATAAGGAGTTCATTC
643 CGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTC
** * * * * * ** *
1580925 CTGGTCTAAGACCAGACTGGACCGA--G-TGCGGTAACAGGATCAGTAGCACACTGAGGGTGACC
707 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTTGAGGGGGACC
* * * * *
1580987 CGACCGATCCCCGGCTTACGCATCTTGCCCCTCTGGCCGGCTGAACGCCCGCACGTTCGTTTCGT
772 CGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCAT
1581052 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
837 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-TACG
* * * * *
1581097 GAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCAGTTGCACATGCTGGGCTTGCG
1 GAGTTCATTCCCAGTCTAAGATCGAACT-GGATCGAGGGTTGCAGGTGCACATGCTGGGCTCGGG
* * * * *
1581161 CATATGCTGGTGTCGCA-TTATTTTCGCTC-GAGGCACCAACGTCGGAGAACCTGACCTGCGGCA
65 CATGTGCTGGTGCCGCATTTTTTTTCGC-CAG-GGCACCATCGTCGGAGAACCTGACCGGCGGCA
* * *
1581224 TTGGGGTTTCGGCGATT-----GGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTA
128 TTGGGGTTCCGGCGATTGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
1581284 TCCCTTATATTGGCCCCCTATCCCTCATCAAACTTGGAGAACTCACACCCCCTTAAAGTGCATTT
193 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* *
1581349 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCCGAAATGGGGACAC-TTTTTCAAAT
258 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* * * **
1581413 TGTCACAAAATCCAGTACACTTCGAGTTTCTAGCTGAATTTTTTTATGCATGCCAA-AAAAATGT
323 GGTCACAAAA-CC-GT--A-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * * *
1581477 AAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTTAAAAAATCTTGAA
383 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAA
* *** * *
1581542 TCGTAAAAAGTTTTGCAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACATG
448 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
* * *
1581607 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAATGGCATGACA-AATATG
513 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA-ATA
*
1581671 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCTTCTCTGG
577 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
* * * * *
1581736 CCGACGTAGTGCCCGCCCGCTCGCTCGCTCGTTTCGTCGGTTGGCTTAAGCATAAGGAGTTCATT
642 CCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * ** *
1581801 CCCAGTCTAAGAATGA-ACCAGACTGAGGGTTACGGTACCAAGATTGGCAGCACACTGAGAGGGA
706 CCCAGTCTAAG-ATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTTGAGGGGGA
* ** * * * **
1581865 TCCGACCGATCCTTGACTTGCGCATCTTGACCCTCTGGCCAACTGAGCGCCCGCACGCTCGTTTC
770 CCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
1581930 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
835 ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-TACG
*
1581977 GAGTTCATTCCCAGTTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGT
1 GAGTTCATTCCCAG--T---C-TA---AG---A-T--C-G----A-A-C---T-GGATCGAGGGT
* * * *
1582042 TACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTA-TTTTTTTCGCTCATGGCACCAT
40 TGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGC-CAGGGCACCAT
* *
1582106 CGTCGGAGAACCTGACTGGCGGCATTAGGGTTCCGGCGATT-----GGGGGGGTGTGCGCACATG
104 CGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGGGGGGTGTGCGCACATG
* *
1582166 ATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAA
169 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
1582231 CTCACACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCCATTAAAGTGTCT
234 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
1582296 GAAATGGGGACACTTTTTTCAAATGGTCAC-AAA-C---TTCGAGTTTTTAGCTGAATTTTTTTG
299 GAAATGGGGACACTTTTTTCAAATGGTCACAAAACCGTATTCGAGTTTTTAGCTGAATTTTTTTG
* * *
1582356 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACACCTTCTGAAAAA
364 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* *
1582421 ATTTTAAAAAAATCTCGAACTGTAAAAAGTTTCAAAAACCGTGAAAAATAGAAAACGAGTCGTCT
429 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1582486 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGC
494 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
1582551 ATTGGCAT-GAAAAGAATATGAAGATGTGCCTAAACCCACCTACCA-CCTATTGATCCACGGCTT
559 ATTGGCATGGCAGA-AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
1582614 GCGCATCCCACCTCTCTGGCCGACGTAGTGCACGCCCGCCCGCCCGCTCGTTTCGTCGATTTGCG
623 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG-TTGGCT
* * * * * *
1582679 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACAGCAGTAGGATCG
687 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG
** * *
1582744 GCAGCACGCAGAGGGGGAACCCGACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGG-CTGCTGA
752 GCAGCACGTTGAGGGGG-ACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
** * *
1582808 GCGCCCAAACGCTCGTTTCGA-AGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAAGCATA
816 GCGCCCGCACGCTCGTTTC-ATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-TA
1582872 CG
879 CG
* * * * * * *
1582874 GAGTTCATTCCCAGTCTAAGATCGGACCGGA-CTGAGAGTTACGGGTGCACATGTTGGGCTCGAG
1 GAGTTCATTCCCAGTCTAAGATCGAACTGGATC-GAGGGTTGCAGGTGCACATGCTGGGCTCGGG
* * *
1582938 CATGTGCTGGTGCCGCA-TTTTTTTCGCCTGAGCCACCATCGCCTGAGCATCGCCAGAGAACTTG
65 CATGTGCTGGTGCCGCATTTTTTTTCGCCAG-GGCACCAT---C---G--TCG---GAGAACCTG
* * * * * *
1583002 ATCGACGGCATTGGGGTTCCGACAATTGGGGGGGCCGAGGGGAGGTGTGCGCACAGGATGTGTGA
118 ACCGGCGGCATTGGGGTTCCGGCGATT--GGGGG--G-GGGG-GGTGTGCGCACATGATGTGCGA
* *
1583067 TGGGTGCTGGTACTTGGCCCTGATATTGG-CCCCTATCCCTCTATCAAACCTCAAGAACTCACAC
177 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC-ATCAAACCTCGAGAACTCACAC
*
1583131 CCCCTTAAAGAGC-TTTGAGGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTGCTGAAAT
241 CCCCTTAAAGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAAT
1583195 GGGGACACTTTTTTC-AATGGTCAC-AAA-C-T-TT-GAGTTTTTTAGCTGAATTTTTTTGTGCA
304 GGGGACACTTTTTTCAAATGGTCACAAAACCGTATTCGAG-TTTTTAGCTGAATTTTTTTGTGCA
*
1583254 TGCCAAC--AAATACAAGGATCATGTCTACCAAGTTTGGGGGGCCCAAAA-TCCTTCTGAAAAAA
368 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT--GGGG-CCAAAACTCCTTCTGAAAAAA
* *
1583316 TTTTTAAAAAATCTCGAACCGTAAAAAAGTTTCAAAAA-CTGTG-AAAATAGAAAACGAGTCATC
430 TTTTAAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGTC
* *
1583379 TTG-CATGAAACTTCACAAGAAGGCTTAA-GGACCATTGCATGAA-TTACAAGCCATAAAAATGG
493 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1583441 CATTGGGATGGCA-AAATATGAAGATGTGCCTAAACCCACATACCACCCTACCGATCCATGACTT
558 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * ** * *
1583505 GCGCATCCCGCCTCTTTGGCCGACGTAGTGCCTGCCTTCCTGCCTGCTCGTTTCGTCGGTTGGCT
623 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCT
* * * *
1583570 TAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGCGGTAGCAGGAT--
687 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCG
*
1583633 ----CA-G-T--------------C-A------GCTTGCGCATCCTGCCCCTCTGGCTGGCTGAG
752 GCAGCACGTTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * * * * *
1583671 CGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTGATTCCTAGTCTAAGCATACG
817 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-TACG
** * * *
1583736 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGC
* * * *
1583801 ATGTGCTAGTGCCGTATTTTTTTTTGCCCGAGGCACCATCGTCGGAGCATCACCGTAGAACCTGA
66 ATGTGCTGGTGCCGCATTTTTTTTCGCCAG-GGCACCATCGTCGGAG-A--ACC-T-G-ACC-G-
* * *
1583866 CTGACGACATTGGGGTTCTGGCGATTGGGGGGGCCTGGGGGGCTGTGCGCACATAATGTGCGATG
122 --G-CGGCATTGGGGTTCCGGCGATT-GGGGGG---GGGGGG-TGTGCGCACATGATGTGCGATG
* *
1583931 GGTGTTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
179 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
1583996 CTTAAAAAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
244 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
1584061 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTGTTGT-CAT
309 CACTTTTTTCAAATGGTCACAAAA-CC-GT--A-TTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
1584125 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
369 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
* * * * *
1584190 AAAAGAA-CCCAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCTTGCCA
434 AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
1584254 AGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGG
499 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
1584319 GATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCGACGGCTTGCGCAT
564 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * ** * * *
1584384 CCCGCCTCTCTGGTCGGCGTAATGCCCGCCCACCTACCTGCTCGTTTCGTTGGTTGGCATAGGCA
629 CCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG-TCGTTGGCTTAGGCA
* * * * * * * *
1584449 TACGGAGTTCATTCCCAGTCTAAGACCAGACTGGACCAAGGGTTACGGCAGTACGATTGGCAGC-
693 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCA
* * * * *
1584513 CTGTTGAGGGGGACCC-AGCCGATCCCCTGCTTGCGCATCCTGCTCCTCTAGCCGACTGAGCACC
758 C-GTTGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
* * *
1584577 TGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-T-----TC----C-A--
821 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTACG
* * * ** * *
1584624 -AG-----T--C---C-AAGATCGGACTGGACCGAGGGTTGTAGGTGCGTATGCTGCGCTCGAGC
1 GAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGC
* * * * * * *
1584677 ATGTGCTGGTGCCACATTCTTTTTCGCCCGGTGCACCATCGCCGGAGAACCTAACTGGCGGTATT
66 ATGTGCTGGTGCCGCATTTTTTTTCGCCAGG-GCACCATCGTCGGAGAACCTGACCGGCGGCATT
** * *
1584742 GGGGTTCCAACGATTCGGGGGGGCCAGGGGGTGTGTGCACATGATGTGCGATGGGTGTTGGTACT
130 GGGGTTCCGGCGATT-GGGGGGG---GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
1584807 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCAT
191 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
1584872 TTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
256 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* *
1584937 ATGGTCACAAAATCCTGTACACTTCGA-TTTTTGAGCAGAATTTTTTTGTACATGCCAACAAAAA
321 ATGGTCACAAAA-CC-GT--A-TTCGAGTTTTT-AGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
1585001 TACAAGGATCACG-CATACCAAGTTTGGGTCCAGAACTCATTCTGAAAAAATTTTAAAAAAATCT
380 TACAAGGATCACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT
* * * *
1585065 CGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAATGAGTTGTCTTGCCATGAAACTTCA
444 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
1585130 CAAGAAGGCTTAAGCGACCATTGTGTGAATTTACAAGCCATAAAAAATGGCATTGGCATGGCAGA
509 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGGCAGA
* * *
1585195 AATATGAAGATGTGCCTAAACCCACCTACCATCCTATTGATCCACGACTTGCGCATCCCGCCTCT
573 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
* ** * * *
1585260 CTGGCCGGCATAGTGCCCGCCCGCCTTCCTGCTCGTTTCTTCGATTGGCTTAGGCATATGGAGTT
638 CTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCG-TTGGCTTAGGCATACGGAGTT
* ** * * *
1585325 CATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGTTGAGGG
702 CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTTGAGGG
* *
1585390 GGACCCGACCGATCCTCGGCTTGCGCATCCTG-CCC-CT--CCGGCTGAGCGCCCGCACACTCGT
767 GGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
1585451 TTCGTGGGTTGACTTAGGCATAC--AG---------AG--T----T-C-
832 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTACG
* ** * *
1585481 -A-TTC---CCC-GTCTAAGATCGGAGGGGATCGAGGGTTGCGGGGGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGC
* * * ** **
1585540 ATGTGCTAGTGCTGCATTTTTTTTTGCCCAGGGCACCATCACCGGAGAACCTGACCAACGGCATT
66 ATGTGCTGGTGCCGCATTTTTTTTCG-CCAGGGCACCATCGTCGGAGAACCTGACCGGCGGCATT
* * *
1585605 GAGGTTCCGGCGATTGGGGGGGTGGGGGTGTGCGCACATTATGTGTGATGGGTGCTGGTACTTGG
130 GGGGTTCCGGCGATTGGGGGGG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGG
* *
1585670 CCCTTATATTCGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
194 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
* * *
1585735 AGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATG
259 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
1585800 GTCAC-AAA-C-T-TT-GAGTTTTTAGCTGAATTTTTTTGTGCATGGCAAAAAAAAATACAAGGA
324 GTCACAAAACCGTATTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-GCCAACAAAAATACAAGGA
* * * *
1585860 TCATGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATATTAAAAAAATCTCAAACCGTA
388 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTA
** * *
1585925 AAAAGTTTCAAAAATCAAGAAAAATAGAAAATGAGTTGTCTTGCCATGAAACTTCACATGAAGGC
453 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
** *
1585990 TTAAGGGACCATTGTATGAATTTACAAGCCATAAATTTGGCATTGGCATGGCGGAAATATGAAGA
518 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGA
* * ***
1586055 TGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCGTAACTCTGGCCGGCG
583 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCG
* * *
1586120 TAGTGCCCGCCTGCTCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
648 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* ** * ** * * *
1586185 CTAAGATCGGACCGGATGGAGGGTTACGACAGTAGGATTGGCAGCACGTTGAGGGGGACCCGATC
712 CTAAGATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTTGAGGGGGACCCGACC
* * * * *
1586250 AATCCCCGGCTTGCGCATTCTGCCCCTCTGGCTGGCTGAGCGCCCGTACACTCGTTTCATGGGTT
777 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTT
1586315 GACTTAGGCATAC--A----A-----AG--T----T---
842 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTACG
* **
1586334 -A----ATTCCCAGTCTAAGATCAGAGC-GGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATC-GAACTGGATCGAGGGTTGCAGGTGCACATGCTGGGCTCGGG
* *
1586393 CTTGTGCTGGTGCCGCATCTTTTTTTGCACGGGCACTATCGTCGG-AGCATCGTCGGAGAACCTG
65 CATGTGCTGGTGCCGCAT-TTTTTTT---C--GC-C-A--G--GGCACCATCGTCGGAGAACCTG
* * * * *
1586457 ACCAGCGGCAATGGGGTTCCGGCAATTGGAGGGGCCGGGGGGTGGGGTGTACACACATGATGCGC
118 ACCGGCGGCATTGGGGTTCCGGCGATTGG-GGGG--GGGGGGT---GTG--CGCACATGATGTGC
* * *
1586522 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTGATCAAACCTCGAGAGCTCACA
175 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
1586587 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-TTGCCAGTAGCCATTAAAGTGTTTGGAATG
240 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
1586651 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
305 GGGACACTTTTTTCAAATGGTCACAAAA-CC-GT--A-TTCGAGTTTTTAGCTGAATTTTTTTGT
* *
1586716 GCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAAAA
365 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
*
1586781 CTTTAAAAA
430 TTTTAAAAA
1586790 TTCTCGGGCA
Statistics
Matches: 6362, Mismatches: 755, Indels: 609
0.82 0.10 0.08
Matches are distributed among these distances:
834 74 0.01
835 34 0.01
836 12 0.00
837 65 0.01
838 1 0.00
839 115 0.02
840 1 0.00
841 1 0.00
842 257 0.04
843 56 0.01
844 31 0.00
845 4 0.00
847 2 0.00
848 2 0.00
849 1 0.00
850 236 0.04
851 175 0.03
852 8 0.00
853 5 0.00
854 109 0.02
855 15 0.00
856 57 0.01
857 5 0.00
858 2 0.00
859 5 0.00
860 174 0.03
861 53 0.01
862 270 0.04
863 204 0.03
864 252 0.04
865 151 0.02
866 110 0.02
867 217 0.03
868 22 0.00
869 40 0.01
870 114 0.02
871 208 0.03
872 92 0.01
873 212 0.03
874 8 0.00
875 7 0.00
876 84 0.01
877 369 0.06
878 83 0.01
879 135 0.02
880 173 0.03
881 178 0.03
882 386 0.06
883 64 0.01
884 3 0.00
885 4 0.00
886 2 0.00
887 3 0.00
888 2 0.00
889 2 0.00
890 31 0.00
891 152 0.02
892 68 0.01
893 156 0.02
894 196 0.03
895 27 0.00
896 8 0.00
897 251 0.04
898 237 0.04
899 1 0.00
901 2 0.00
902 67 0.01
904 1 0.00
906 255 0.04
907 15 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (880 bp):
GAGTTCATTCCCAGTCTAAGATCGAACTGGATCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTTTTCGCCAGGGCACCATCGTCGGAGAACCTGACCGGCGGCATTG
GGGTTCCGGCGATTGGGGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAACCGTATTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAA
AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCGGACCGAGGGTTGCGGTAGCAGGATCGGCAGCACGTTGAGGGGGACCCGACCGATC
CCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACT
TAGGCATACGGAGTTCATTCCCAGTCTAAGCTACG
Found at i:1581100 original size:26 final size:26
Alignment explanation
Indices: 1581064--1581116 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1581054 GTTGACTTAG
1581064 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1581090 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1581116 G
1 G
1581117 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1581974 original size:26 final size:26
Alignment explanation
Indices: 1581944--1582022 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
1581934 GTTGACTTAG
1581944 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1581970 GCATACGGAGTTCATTCCCAGTTTAG
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1581996 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1582022 G
1 G
1582023 ATCGGATCGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1582880 original size:26 final size:26
Alignment explanation
Indices: 1582844--1582893 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
1582834 GACTTAGGCG
1582844 TACGGAGTTCATTCCCAGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
1582870 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
1582894 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:1583739 original size:26 final size:26
Alignment explanation
Indices: 1583703--1583755 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1583693 GTTGACTTAG
* *
1583703 GCATACAGAGTTGATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1583729 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1583755 G
1 G
1583756 ATCGAACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1587161 original size:403 final size:402
Alignment explanation
Indices: 1586387--1587181 Score: 1213
Period size: 403 Copynumber: 2.0 Consensus size: 402
1586377 ACATGCTGGG
* * * **
1586387 CTCGGGCTTGTGCTGGTGCCGCATCTTTTTTTGCACGGGCACTATCGTCGGAGCATCGTCGGAGA
1 CTCGGGCATGTGCTGGTGCCACATCTTTTTTTGCACGGGCACCATCGTCGGAGCATCACCGGAGA
1586452 ACCTGACCAGCGGCAATGGGGTTCCGGCAATTGGAGGGGCCGGGGGGTGGGGTGTACACACATGA
66 ACCTGACCAGCGGCAATGGGGTTCCGGCAATTGGAGGGGCCGGGGGGT--GGTGTA-ACACATGA
* * * *
1586517 TGCGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTGATCAAACCTCGAGAGC
128 TGCGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAAAAC
* * *
1586582 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTTGCCAGTAGCCATTAAAGTGTTTGG
193 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGTGTCTGA
*
1586647 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
258 AATGGGGACACTTTTTCCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
1586712 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAA
323 TTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAA
1586777 AAAACTTTAAAAATT
388 AAAACTTTAAAAATT
***
1586792 CTCGGGCATGTGCTGGTGCCACAT-TTTTTTTCGTTGGGGGCACCATCGTCGGAGCATCACCGGA
1 CTCGGGCATGTGCTGGTGCCACATCTTTTTTT-G-CACGGGCACCATCGTCGGAGCATCACCGGA
* * * *
1586856 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATTAGG-GGGGCCGAGGGGGT-GTGT-GCACATG
64 GAACCTGACCAGCGGCAATGGGGTTCCGGCAATT-GGAGGGGCCG-GGGGGTGGTGTAACACATG
* ** *
1586918 ATGTGTGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCACTCATCAAACCTCGAAAA
127 ATGCGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAAAA
1586983 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
192 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-CTGCCAGTAGCCATTAAAGTGTCT
*
1587048 GAAATGGGGACACTTTTTCCAAATGGTCACAAAATCCTGTACACTAT-GAGTTTTTAGTTGAATT
256 GAAATGGGGACACTTTTTCCAAATGGTCACAAAATCCTGTACACT-TCGAGTTTTTAGCTGAATT
*
1587112 TTTTTGTGCATGCCAAAAAAAATACAAGGATCGTGTCTACCAAGTTTGGGACCAAAACTCCTTCT
320 TTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCT
1587177 GAAAA
385 GAAAA
1587182 TTTTTTTAAA
Statistics
Matches: 355, Mismatches: 29, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
402 103 0.29
403 147 0.41
404 12 0.03
405 23 0.06
406 62 0.17
407 8 0.02
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (402 bp):
CTCGGGCATGTGCTGGTGCCACATCTTTTTTTGCACGGGCACCATCGTCGGAGCATCACCGGAGA
ACCTGACCAGCGGCAATGGGGTTCCGGCAATTGGAGGGGCCGGGGGGTGGTGTAACACATGATGC
GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAAAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTCCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAAAAA
ACTTTAAAAATT
Found at i:1587641 original size:26 final size:26
Alignment explanation
Indices: 1587604--1587656 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1587594 GTTGACTTAG
*
1587604 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
1587630 GCATACGAAGTTCTTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1587656 G
1 G
1587657 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1590357 original size:875 final size:873
Alignment explanation
Indices: 1586792--1590962 Score: 5147
Period size: 875 Copynumber: 4.8 Consensus size: 873
1586782 TTTAAAAATT
** * *
1586792 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGTTGGGGGCACCATCGTCGGAGCATCACCGGAG
1 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCG-CCGGGGCACCATCGCCGGAGCATCATCGGAG
* * * **
1586857 AACCTGACCGGCGGCATTGGGGTTCCGGCGATTAGGGGGGCCGAGGGGGTGTGTGCACATGATGT
65 AACCTGACCAGCGGCATTGGGGTTCTGGCGATTGGGGGGGCCGA-GGGGTGTGCACACATGATGT
* * * *
1586922 GTGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCACTCATCAAACCTCGAAAACTCA
129 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1586987 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
194 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1587052 TGGGGACACTTTTTCCAAATGGTCACAAAATCCTGTACACTAT-GAGTTTTTAGTTGAATTTTTT
259 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT-TCGAGTTTTTAGCTGAATTTTTT
**
1587116 TGTGCATGCCAAAAAAAATACAAGGATCGTGTCTACCAAGTTTGGGACCAAAACTCCTTCTGAAA
323 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCTGAAA
** * * *
1587181 ATTTTTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGATTCGT
387 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
1587246 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAG
452 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
1587311 GCATTGGCATGACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACT
517 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
** * ** ** * * * * *
1587376 CACGAATCCCATCTCTCT-GATCGGTATAGTGCCCGCCCACCCGCCCGCTTGTTACATCGGTTGA
582 TGCGCATCCCGCCTCTCTAG-TCGGCGTAGTGCCCGCCC-GCCGCCCGCTCGTTTCGTCGGTTGT
* * * * * * *
1587440 CTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATTGGAT-TGGATCAAGGGTTGCAACAGCAGGA
645 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGATCCGAACCAAGGGTTGCAGCAGTAGGA
** * * * * * * * *
1587504 TCGGGAACATGC-AGAGGGGGACCC-GACAGATCCCC-GACTTGTGCATCCTACCCATCGGGCTG
709 TCGACAGCACGCTA-AGGGGGACCCAG-CCGATCCCCGGA-TTGTGCATCCTGCCCCTCTGACCG
* *
1587566 GCTGAGCGCCCGCACGTTCGTTTCCTGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
771 GCTGAGCGCCCGCACG--C---T-C--T-TT---TT----AT--GG-GTTGA----C--T-TAGG
* * * * * * *
1587631 CATACGAAGTTCTTTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGGGTGCACATCCTGGG
810 CATACGGAGTTCATTCACAGTCTAAGATCAGACCGAACCGAGGGTTACGGGTGCAAATGCTGGG
* * * * *
1587695 CTCGGGTATGTGCTGGTACCACATTTGTTTTCACCCGGGGCACCAT---C---G-----TCGTAG
1 CTCGGGCATGTGCTGGTGCCACATTTTTTTTC-GCCGGGGCACCATCGCCGGAGCATCATCGGAG
* * *
1587749 AACCTGA-CTGACGGCATTGGGGTT-TCGACGATTGGGGGGG-TGAGGGG-GTGCACACATGATG
65 AACCTGACCAG-CGGCATTGGGGTTCT-GGCGATTGGGGGGGCCGAGGGGTGTGCACACATGATG
* *
1587810 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGACCCCCTATCCCTCATCAAA-GTCCGAGAACT
128 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-CGAGAACT
* * *
1587874 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGTCAGTAGCTATTAAAGTGTCTGA
192 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
1587939 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATGCACTTCGAGTTTTTATCTAAATTTTT
257 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
1588004 TTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAAAACTCCCTCTGAA
322 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG-GGCCAAAACTCCTTCTGAA
** *
1588069 AAAA-TTTAAAAAAATCTCGATTCGTAAAAAGTTCCAAAAATCGTGAAAAATAGAAAACGAGTCG
386 AAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
1588133 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGCACCATTGTATGAATTTACAAGCAAT-AAAA-
451 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1588196 GGCATTGGCATGGCAGAAATATGAAGCTGTGCCTAAACCCACCTACCAACCTATCGATCCACGAC
516 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * ** * * *
1588261 TTGCGCATCCCGTCTCTTTGGTCGGCGTACAGCCCGCCCGTCCGCCTGCTGGTTTCATCGGTT-T
581 TTGCGCATCCCGCCTCTCTAGTCGGCGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGT
* * * ** *
1588325 GCTTAGGCATACGGTGCTCATTCCTAGTCTAAGATCAGA-CC-AGACTGAGGGTTGCGGCAGTAG
645 -CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCCGA-ACCAAGGGTTGCAGCAGTAG
* * * * *
1588388 GATCGGCAGCACGCTAAGGGCGACCCGGTCGATCCCCGGATTGTGCAT-CTCGCCCCTCTGGCCG
707 GATCGACAGCACGCTAAGGGGGACCCAGCCGATCCCCGGATTGTGCATCCT-GCCCCTCTGACCG
* * * *
1588452 GTTGAACGCCCACACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTC-CTAGTCTAA
771 GCTGAGCGCCCGCACGCTCTTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCAC-AGTCTAA
* * *
1588516 GATCGGACCGAACCGAGGGTTATGGGTGCAAATGCTTGG
835 GATCAGACCGAACCGAGGGTTACGGGTGCAAATGCTGGG
* ** * * **
1588555 CTCGGGCATGTGTTGGTGCCGTATCTTTTTTCTCCTATGGCACCATCGCCGGAGCATCATCGGAG
1 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCC-GGGGCACCATCGCCGGAGCATCATCGGAG
*
1588620 AACCTGA-C--C-G-A--------C-GAC-ATTGGGAGGGGCCG-GGGGTGTGCACACATGATGT
65 AACCTGACCAGCGGCATTGGGGTTCTGGCGATTGGG-GGGGCCGAGGGGTGTGCACACATGATGT
* * *
1588669 GCGATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCCCAAGAACTCA
129 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1588734 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
194 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1588799 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTATGCACTTCGAGTTTTT-GTCTGAATTTTTT
259 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG-CTGAATTTTTT
* * * *
1588863 TGTGCATGCCCAAAAAAATACAAAGATCACATCTACCAAGTTTGGGGCCAAAACTCCCTCTGAAA
323 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAAA
* * *
1588928 AAA-TTTAAAAAAATCTCGAATCGTAAAAAGTTCCAAAAATCATGAAAAATAGAAAACGAGTCGT
387 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
1588992 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
452 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1589057 GCATTGGCTTGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCT
517 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
1589122 TGCGCATCCCGCCTCT-TTGGCTGGCGTAGTGCCCGCCCGTCCGCCTGCTGGTTTCGTCAGTT-T
582 TGCGCATCCCGCCTCTCTAGTC-GGCGTAGTGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGT
* * * * * * *
1589185 GCTTAGGCATACGGTGTTCATTCCCAGTCTAGGATCAAACCAAACCGAGGGTTGCGGCAGTAGGA
645 -CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGATCCGAACCAAGGGTTGCAGCAGTAGGA
* * *
1589250 TCGATAGCACGCTAAGGGGGACCCTA-TCGATCCCCGGATTGTGCATCCCGCCCCTCT-AGCCGG
709 TCGACAGCACGCTAAGGGGGACCC-AGCCGATCCCCGGATTGTGCATCCTGCCCCTCTGA-CCGG
* * * * * * *
1589313 TTGAGCGCCCGTAAGCTCGTTTTATGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTATGA
772 CTGAGCGCCCGCACGCTCTTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGA
*
1589378 TCAGACCGAACCGAGGGTTACGGGTGCAAATGTTGGG
837 TCAGACCGAACCGAGGGTTACGGGTGCAAATGCTGGG
* * ** * * *
1589415 CTCGAGCATGTGGTGGTGCCGTATTTTTTTTCGCCTGGGGCATCATCGCTGGAGCATCATTGGAG
1 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCC-GGGGCACCATCGCCGGAGCATCATCGGAG
* *
1589480 AACCTGACCAGCGACATTGGGGTTCTGGTGATTGGGGGGGCCGAGGGGTTGTGCACACATGATGT
65 AACCTGACCAGCGGCATTGGGGTTCTGGCGATTGGGGGGGCCGAGGGG-TGTGCACACATGATGT
1589545 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
129 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1589610 CACCCACTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
194 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1589675 TGGGGACACTTTTTTCTAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
259 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
1589739 GTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTCTGAAAA
324 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTCCTTCTGAAAA
* **
1589804 AATTTTAAAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
388 AATTTT-AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
1589869 CTTGCCATGACACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAGTG
452 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1589934 GCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGGCT
517 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
1589999 TGCGCATCCCGCCTCTCTAGTCGACGTAGTG-CCGCCCGCCACCCGCTCTTTTTGTCGGTTGTCT
582 TGCGCATCCCGCCTCTCTAGTCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGTCT
*
1590063 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGATCCGAACCAAAGGTTGCAGCAGTAGGATCG
647 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGATCCGAACCAAGGGTTGCAGCAGTAGGATCG
* * * * * * *
1590128 ACAGCACACTGAGGGGGACACAGCCGATCCCTGGCTTGCGCATCCTGCCCCTCTGACCGACTGAG
712 ACAGCACGCTAAGGGGGACCCAGCCGATCCCCGGATTGTGCATCCTGCCCCTCTGACCGGCTGAG
* *
1590193 CGTCCGCACGCT-TTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAG
777 CGCCCGCACGCTCTTTTT-ATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAG
* * *
1590257 ACCGGACCGAGGGTTATGGGTGCACATGCTGGG
841 ACCGAACCGAGGGTTACGGGTGCAAATGCTGGG
* * * *
1590290 CTCGGGCATGTGTTGGTGCCACATTTTTTTTCGCTCGAGGCACCATCGCCGGATCATCGTCGGAG
1 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGC-CGGGGCACCATCGCCGGAGCATCATCGGAG
* * * *
1590355 AACCTGACCAGCGGCATTGGGGTTCCGGCGATTGGGAGGGCCGAGGGGGTGAGCGCACATGATGT
65 AACCTGACCAGCGGCATTGGGGTTCTGGCGATTGGGGGGGCCGA-GGGGTGTGCACACATGATGT
* ** *
1590420 GCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCGGACATCGAGAACTCA
129 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
1590485 CCCCCCCTTAAAGAGTATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
194 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1590550 TGGGGACACTTTTTTCAAATTGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGGATTTTTTT
259 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1590615 ATGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTTGGGCCAAAACACCTTCTGAAAA
324 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG-TTTGGGCCAAAACTCCTTCTGAAAA
* *
1590680 AATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTC
388 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
1590744 TTGCCACGAAACGTCACATGAAGGTTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGG
453 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1590809 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACTCACCTACCATCCTATCGATCCACGGCTT
518 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
1590874 GCGCATCTCGCCTGTCTAGTCGCCATAGT----G--C-CCGCCCGCTCATTTTGTCTGTTGGCTT
583 GCGCATCCCGCCTCTCTAGTCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGTCTT
1590932 AGGCATACGGAGTTCATTCCCAGTCTAAGAT
648 AGGCATACGGAGTTCATTCCCAGTCTAAGAT
1590963 TAGACCAGAC
Statistics
Matches: 2890, Mismatches: 303, Indels: 185
0.86 0.09 0.05
Matches are distributed among these distances:
856 6 0.00
857 11 0.00
858 376 0.13
859 12 0.00
860 463 0.16
861 5 0.00
863 3 0.00
865 1 0.00
866 2 0.00
867 5 0.00
868 57 0.02
869 1 0.00
870 2 0.00
871 14 0.00
873 1 0.00
874 214 0.07
875 562 0.19
876 274 0.09
877 207 0.07
878 3 0.00
880 1 0.00
881 1 0.00
884 1 0.00
885 3 0.00
886 209 0.07
887 9 0.00
888 113 0.04
889 247 0.09
890 6 0.00
891 4 0.00
892 36 0.01
897 1 0.00
900 1 0.00
903 39 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (873 bp):
CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCGGGGCACCATCGCCGGAGCATCATCGGAGA
ACCTGACCAGCGGCATTGGGGTTCTGGCGATTGGGGGGGCCGAGGGGTGTGCACACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGCCTCTCTAGTCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGTCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCGATCCGAACCAAGGGTTGCAGCAGTAGGATCGACAG
CACGCTAAGGGGGACCCAGCCGATCCCCGGATTGTGCATCCTGCCCCTCTGACCGGCTGAGCGCC
CGCACGCTCTTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGACCGA
ACCGAGGGTTACGGGTGCAAATGCTGGG
Found at i:1592667 original size:26 final size:26
Alignment explanation
Indices: 1592631--1592683 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1592621 GTTGACTTAG
1592631 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
1592657 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
1592683 G
1 G
1592684 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:1593285 original size:898 final size:893
Alignment explanation
Indices: 1591756--1594713 Score: 3905
Period size: 885 Copynumber: 3.3 Consensus size: 893
1591746 GTTGACTTAG
* ** * ** *
1591756 GCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTTTGGGTGCACATGC-GAG
1 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
* ** * * * * *
1591820 CTC-AGCCACGTACCAGTGTCATATTTTTTTCGCCCGAGGTACCATCGCCAGAGCATCGTCAGAG
66 CTCGAG-CATGT-CTGGTGCCGTATTTTTTTCGCCCG-GGCACCATCGCCGGAGCATCGTCGGAG
* *
1591884 AACCTGACCGGCGGCATTGGGGTTTCGGTGATTGGGGGGCCCGAGGGGAGTGTGCGCACATGATG
128 AACCTGACCGGCGACATTGGGGTTTCGG-GATTGGGGGGGCCGAGGGG-GTGTGCGCACATGATG
*
1591949 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG-ACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1592013 ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
256 AC-ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
1592078 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
** * *
1592143 TGTGCATGTGAGCAAAAATACAATGATCACGTCTACCTAATTTGGGTCCAAAACTCCTTCTGAAA
384 TGTGCATGCAAGCAAAAATACAAGGATCACGTCTACC-AATTTGGGGCCAAAACTCCTTCTGAAA
1592208 AAATTTTAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
448 AAATTTTAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1592273 CTTGCCCTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATG
513 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * *
1592338 GCATTGGAACGGTAGAAATATGAATATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCT
578 GCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
1592403 TGCGCATCCCGCCTCTCTGGCCGGCATTGTGCCCGCCTGCCCGCCCACTCGTTTCCTCGGTTGGC
643 TGCGCATCCCGCCTCTCTGGCCGGC-TTGTGCCCGCCTGCCCGCCC-CTCGTTTCGTCGGTTGGC
*
1592468 TTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACTGAGGGTTGAGGTAGCAGGATT
706 TTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACTGAGGGTTGAGGTAGCAGGATC
* * * * * *
1592533 GGCAGCACACTAAGGGGGACCCGGCCGATCCCCGGCATGCGCATCTTGCCACTTTGGCCGACTGA
771 GGCAGCACGCTAAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCC-CTTTGGACGGCTGA
*
1592598 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
835 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1592657 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAGGGTTGCAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
* *
1592722 CTCGGGCATCGT-TGGTGTCGTATTTTTTTCGCCCAGGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGAGCAT-GTCTGGTGCCGTATTTTTTTCGCCC-GGGCACCATCGCCGGAGCATCGTCGGAGA
* *
1592786 ACCTGATCGGCAACATTGGGG-TTCTGGGATTGAGGGGGGCCG-GGGGGTGTGCGCACATGATGT
129 ACCTGACCGGCGACATTGGGGTTTC-GGGATTG-GGGGGGCCGAGGGGGTGTGCGCACATGATGT
*
1592849 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1592914 CATCCCCTTAAAGAGCATTTGAGATTTTATAGGTTGGCTGCTAGTAGCCATTAAAGTGTCTAAAA
257 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* * * *
1592979 TGGGGACACTTTTTTCGAATGGTCAAAAAATCCTATACACGTCGAGTTTTTAGCTGAATTCTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* * * *
1593044 GTGCATGCCCA-CAAAAACACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCATCT-AAA
385 GTGCATG-CAAGCAAAAATACAAGGATCACGTCTACCAA-TTTGGGGCCAAAACTCCTTCTGAAA
* * * * * *
1593107 AAA-ATTATAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCAT
448 AAATTTTAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
1593171 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
513 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1593236 GCATTGGCACAGCAAAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
578 GCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
1593301 TGCGCATCCTGCCTCTCCGGCTGGCGTAGTGCCCGACC-GCCTG---TTCGTTTCGTTGGTTGGC
643 TGCGCATCCCGCCTCTCTGGCCGGC-TTGTGCCCG-CCTGCCCGCCCCTCGTTTCGTCGGTTGGC
* * * * * * * * *
1593362 TTTGGCATACGAAATTCATTCCCAGTCTAAGATCGG-TCTGAACCGAGGGTTCCA-GCAGCAGGA
706 TTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCAG-ACTGAGGGTT-GAGGTAGCAGGA
* * * * * *
1593425 TCGGCAGCACGTTGAGGAGGACCTGGTCGATCCCCGACTTGCGCATCCTGCCCTTCTGGACGGTT
769 TCGGCAGCACGCTAAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCTT-TGGACGGCT
* * *
1593490 GAACGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
1593551 GCATAAGGAGTTCATTCCTAGTATAAGATCAGACCGGACCGAGGGTTCCGGGTGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
* *
1593616 CTCGAGCATGTGCTGGTGCCGCATTTGTTTTCACCCGGGGCACCAT---C---G---C--CGGAG
66 CTCGAGCATGT-CTGGTGCCGTATTT-TTTTCGCCC-GGGCACCATCGCCGGAGCATCGTCGGAG
* * * * *
1593670 AACCAGACCGGCGGCATTAGGGTTCCAGCGATT-GGGGGGCC--GGGGGTGTGCGCACATGATGT
128 AACCTGACCGGCGACATTGGGGTTTC-GGGATTGGGGGGGCCGAGGGGGTGTGCGCACATGATGT
*
1593732 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1593797 CACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
257 CAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* * *
1593862 TAGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTGTAGCTGAATATTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT-TTTTT
** * *
1593927 GTGCATGCAATAAAAAATACAAGGATCATGTCTACCATTTTTGGGGCCAAAACTCCTTCTGAAAA
385 GTGCATGCAAGCAAAAATACAAGGATCACGTCTACCA-ATTTGGGGCCAAAACTCCTTCTGAAAA
* *
1593992 AATTTTAAAAAAATCCCGAATCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
449 AATTTTAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
1594057 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
1594122 CATTGGCGTGGCAAAAATATGAAGATGTGCCTAAACCCTCCTACTACCCTATCGATCCACGGCTT
579 CATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1594187 GCGCATCCCGCCTCTCTGGCCGG-TGTAGTGCCTG-CT-CAC-CCGCTCGTTTCGTCGATTGGCT
644 GCGCATCCCGCCTCTCTGGCCGGCT-T-GTGCCCGCCTGCCCGCCCCTCGTTTCGTCGGTTGGCT
* * * * * * * *
1594248 TATGCATACGGAGTTCATTCCCATTCTAAGATTGAACCAAATTGAAGGTTGCGGTAGCAGGATCG
707 TAGGCATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACTGAGGGTTGAGGTAGCAGGATCG
* * * * * * * *
1594313 ACAGCACGCTAAGGGTGACCTGACCGATCCCAGGCTTGTGCATCCTACCCCTCTGGTCGGCTGAG
772 GCAGCACGCTAAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCT-GCCCTTTGGACGGCTGAG
* *
1594378 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
836 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
1594436 GCATACGGAGTTCATTCCCAGTATAAGATCCGATCAGACCGAGGGTTATGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
* ** *
1594501 CTCGAGCATGTGCTGGTGCCGTATTTTTTTCGCCTGGGCCACCATCGCCGGAGCATCACCGAAGA
66 CTCGAGCATGT-CTGGTGCCGTATTTTTTTCGCCCGGG-CACCATCGCCGGAGCATCGTCGGAGA
* *
1594566 ACCTGACCGGTGACATTGGGGTTTCGATGATTGGGGGGG-CGAGGGCCGGTGTGCGCACATGATG
129 ACCTGACCGGCGACATTGGGGTTTCG-GGATTGGGGGGGCCGAGGG--GGTGTGCGCACATGATG
* * * *
1594630 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCTTCATCAAACCGCGAAAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
1594695 ACACCCCTTTAAAGAGCAT
256 ACACCCC-TTAAAGAGCAT
1594714 GTGCTGAGCG
Statistics
Matches: 1793, Mismatches: 211, Indels: 108
0.85 0.10 0.05
Matches are distributed among these distances:
882 3 0.00
883 254 0.14
884 28 0.02
885 468 0.26
886 12 0.01
887 2 0.00
890 2 0.00
893 10 0.01
894 237 0.13
895 42 0.02
896 23 0.01
897 3 0.00
898 212 0.12
899 179 0.10
900 181 0.10
901 126 0.07
902 8 0.00
903 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTATAAGATCAGACCAGACCGAGGGTTACGGGTGCACATGCTGGG
CTCGAGCATGTCTGGTGCCGTATTTTTTTCGCCCGGGCACCATCGCCGGAGCATCGTCGGAGAAC
CTGACCGGCGACATTGGGGTTTCGGGATTGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGCAT
GCAAGCAAAAATACAAGGATCACGTCTACCAATTTGGGGCCAAAACTCCTTCTGAAAAAATTTTA
AAAAAATCCCGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGCCTCTCTGGCCGGCTTGTGCCCGCCTGCCCGCCCCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAATCTAAGATTGGATCAGACTGAGGGTTGAGGTAGCAGGATCGGCAGCACGC
TAAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCTTTGGACGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:1593554 original size:26 final size:26
Alignment explanation
Indices: 1593525--1593577 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1593515 GTTGACTTAG
* *
1593525 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCCAGTATAA
*
1593551 GCATAAGGAGTTCATTCCTAGTATAA
1 GCATAAGGAGTTCATTCCCAGTATAA
1593577 G
1 G
1593578 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCCAGTATAA
Found at i:1594446 original size:26 final size:26
Alignment explanation
Indices: 1594410--1594462 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1594400 GTTGACTTAG
*
1594410 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTATAA
*
1594436 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACAGAGTTCATTCCCAGTATAA
1594462 G
1 G
1594463 ATCCGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTATAA
Found at i:1594943 original size:26 final size:26
Alignment explanation
Indices: 1594913--1594965 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1594903 GTTGACTTAG
*
1594913 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1594939 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1594965 G
1 G
1594966 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1595186 original size:503 final size:503
Alignment explanation
Indices: 1594227--1595216 Score: 1309
Period size: 503 Copynumber: 2.0 Consensus size: 503
1594217 CCTGCTCACC
* * * **
1594227 CGCTCGTTTCGTCGATTGGCTTATGCATACGGAGTTCATTCCCATTCTAAGATTGAACCAAATTG
1 CGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATAGAACCAAATCC
* * *
1594292 AAGGTTGCGGTAGCAGGATCGACAGCACGCTAAGGGTGACCTGACCGATCCCAGGCTTGTGCATC
66 AAGGTTGCGATAGCAGGATCGACAGCACGCTAAGGGGGACCCGACCGATCCCAGGCTTGTGCATC
* * * *
1594357 CTACCCCTCTGGTCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
131 CTACCCCTCTGGTCGGCTGAACACCCACACGCTCGTTCCATGGGTTGACTTAGGCATACAGAGTT
* * *
1594422 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCCGATCAGACCGAGGGTTATGG
196 CATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTATAAGATCCGATCAGACCGAAGGTTACGG
* ** **
1594487 GTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTTTTTCGCCTGGGCCACCATCGCCGG
261 GTGCACATGCTGGGCTCGAGCATATGCTGGTGCCACATTTTTTTCGCCAAGGCCACCATCGCCGG
* * * * *
1594552 AGCATCACCGAAGAACCTGACCGGTGACATTGGGGTTTCGATGATTGGGGGGGCGAGGGCCGGTG
326 AGCATCACCGAAGAACCTAACCGGCGACATTGGGGTTCCAACGATTGGGGGGGCGAGGGCCGGTG
* *
1594617 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCTTCATCAA
391 TGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAA
* *
1594682 ACCGCGAAAACTCACACCCCTTTAAAGAGCATGTGCTGAGCGCCCGCA
456 ACCGCGAAAACTCACACCCCCTTAAAAAGCATGTGCTGAGCGCCCGCA
* *
1594730 CGCTCGTTTTGTCTG-TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAG-ACCGAA-
1 CGCTCGTTTCGTC-GATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT-AGAACCAAAT
* * * * * *
1594792 CCAAGGGTTGTGATAGCAGGATC-AGTAGCATGC-AGAGGGGGACCCGACGGATCCCCGGGTTGT
64 CCAA-GGTTGCGATAGCAGGATCGA-CAGCACGCTA-AGGGGGACCCGACCGATCCCAGGCTTGT
* * * *
1594855 GCATCCTGCCCCTCTGG-CTGGCTGAACGCCTATACGCTCGTTCCATGGGTTGACTTAGGCATAC
126 GCATCCTACCCCTCTGGTC-GGCTGAACACCCACACGCTCGTTCCATGGGTTGACTTAGGCATAC
* * * *
1594919 GGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCGAAG
190 AGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTATAAGATCCGATC-AGACCGAAG
*
1594983 GTTACGGGTGCACATGCTGGGCTC-AGGCATATGCTTGTGCCACATTTTTTTCGCCCAAGG-CAC
254 GTTACGGGTGCACATGCTGGGCTCGA-GCATATGCTGGTGCCACATTTTTTTCG-CCAAGGCCAC
* ** *
1595046 CATTGCCGGAGCATCGTCGAAGAACCTAACCGGCGGCATTGGGGTTCCAACGATTGGGGGGGCCG
317 CATCGCCGGAGCATCACCGAAGAACCTAACCGGCGACATTGGGGTTCCAACGATTGGGGGGG-CG
* * *
1595111 TGGG-GGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCTTTATATTGGCCCCCTAT
381 AGGGCCGGTGTGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
1595175 CCCTT-ATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCAT
446 -CCTTCATCAAACCGCGAAAACTCACACCCCCTTAAAAAGCAT
1595217 TTGAGATTTT
Statistics
Matches: 421, Mismatches: 55, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
502 7 0.02
503 399 0.95
504 15 0.04
ACGTcount: A:0.21, C:0.27, G:0.28, T:0.25
Consensus pattern (503 bp):
CGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATAGAACCAAATCC
AAGGTTGCGATAGCAGGATCGACAGCACGCTAAGGGGGACCCGACCGATCCCAGGCTTGTGCATC
CTACCCCTCTGGTCGGCTGAACACCCACACGCTCGTTCCATGGGTTGACTTAGGCATACAGAGTT
CATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTATAAGATCCGATCAGACCGAAGGTTACGG
GTGCACATGCTGGGCTCGAGCATATGCTGGTGCCACATTTTTTTCGCCAAGGCCACCATCGCCGG
AGCATCACCGAAGAACCTAACCGGCGACATTGGGGTTCCAACGATTGGGGGGGCGAGGGCCGGTG
TGCGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAA
ACCGCGAAAACTCACACCCCCTTAAAAAGCATGTGCTGAGCGCCCGCA
Found at i:1596761 original size:26 final size:26
Alignment explanation
Indices: 1596732--1596784 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1596722 GTTGACTTAG
* *
1596732 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1596758 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1596784 G
1 G
1596785 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1598179 original size:26 final size:26
Alignment explanation
Indices: 1598143--1598220 Score: 129
Period size: 26 Copynumber: 3.0 Consensus size: 26
1598133 TTGACTTAGA
1598143 CATACGGAGTTCATTCGCAGTCTAAG
1 CATACGGAGTTCATTCGCAGTCTAAG
*
1598169 CATACGGAGTTCATTTGCAGTCTAAG
1 CATACGGAGTTCATTCGCAGTCTAAG
* *
1598195 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCGCAGTCTAAG
1598221 ATCGGATCGG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCGCAGTCTAAG
Found at i:1599801 original size:26 final size:26
Alignment explanation
Indices: 1599771--1599823 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1599761 GTTGACTTAG
1599771 GCATAC-GCAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
1599797 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1599823 G
1 G
1599824 ATCAAATTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1599933 original size:185 final size:185
Alignment explanation
Indices: 1599609--1600010 Score: 552
Period size: 185 Copynumber: 2.2 Consensus size: 185
1599599 TCGATTGGCT
* * *
1599609 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGCAACAGGATCA
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAACAGGATCA
* * * * * ** **
1599674 GTAGCATATAAAGGGGGACCCGACCAATTCTCGGCTTGTGCATCCTGTGCCTCTGGCCGACTGAG
66 GCAGCACACAAAGGGGGACCCGACCAATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAG
* * * *
1599739 TGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGCAGTTCATTCCCAGTC
131 CGACCGCACGCTCATTTCATAGGTTGACTTAGGCATACGCAGTTCATTCCCAGTC
* ** * * *
1599794 TAAGCATACAGAGTTCATTCCCAGTCTAAGATCAAATTGGATTGAGGGTTGCGACAGCAGGATCG
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAACAGGATCA
* **
1599859 GCAGCACACAAAGGGGGACCCGACCGATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGGTTGAG
66 GCAGCACACAAAGGGGGACCCGACCAATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAG
* * *
1599924 CGACCGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTC
131 CGACCGCACGCTCATTTCATAGGTTGACTTAGGCATACGCAGTTCATTCCCAGTC
1599979 TAAGCATACGGAGTTCATTCCCAGTCTAAGAT
1 TAAGCATACGGAGTTCATTCCCAGTCTAAGAT
1600011 TGAACTGGAT
Statistics
Matches: 188, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
185 188 1.00
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (185 bp):
TAAGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTGCGACAACAGGATCA
GCAGCACACAAAGGGGGACCCGACCAATCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAG
CGACCGCACGCTCATTTCATAGGTTGACTTAGGCATACGCAGTTCATTCCCAGTC
Found at i:1599992 original size:26 final size:26
Alignment explanation
Indices: 1599956--1600008 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1599946 GTTGACTTAG
*
1599956 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1599982 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1600008 G
1 G
1600009 ATTGAACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1600952 original size:159 final size:159
Alignment explanation
Indices: 1600670--1601053 Score: 443
Period size: 159 Copynumber: 2.4 Consensus size: 159
1600660 TGCCAGCTCA
** *
1600670 TTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCTAGTCTAAGAT-ATGATCAGATCGAGGGT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GATCAGATCGAGGGT
* * * ** *
1600734 TGCGGCAGCAGGATCGACAGCACACAGAGGGGGACCCGACCGATCCTTGACTTGTGCATCCTACC
65 TACAGCAGCAGGATCGACAGCACACAGAGGGGAACCCGACCGATCCCCGACTTGCGCATCCTACC
* ** *
1600799 CCTCTGGTCGGCTGAGCGCCTGC-C-CACTCG
130 CCTCTGGCCAACTGAGC-ACT-CACACACTCG
*
1600829 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAATCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTT
* * * * * * * *
1600894 ACAGTAGCAGGATCGATAGCACGCTGAGGGTAACCGGGCCGATCCCCCG-CTTGCGCATCCTGCC
66 ACAGCAGCAGGATCGACAGCACACAGAGGGGAACCCGACCGAT-CCCCGACTTGCGCATCCTACC
* *
1600958 CCTCTGGCCAACTGAGCACTCACACGCTGG
130 CCTCTGGCCAACTGAGCACTCACACACTCG
* * * * *
1600988 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
1 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTT
1601053 A
66 A
1601054 TGGGTGCACA
Statistics
Matches: 191, Mismatches: 30, Indels: 8
0.83 0.13 0.03
Matches are distributed among these distances:
157 1 0.01
158 3 0.02
159 183 0.96
160 4 0.02
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (159 bp):
TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTT
ACAGCAGCAGGATCGACAGCACACAGAGGGGAACCCGACCGATCCCCGACTTGCGCATCCTACCC
CTCTGGCCAACTGAGCACTCACACACTCG
Found at i:1603411 original size:899 final size:881
Alignment explanation
Indices: 1600826--1606896 Score: 7043
Period size: 898 Copynumber: 6.9 Consensus size: 881
1600816 GCCTGCCCAC
* * ** *
1600826 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAATCGAGG
1 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
* * * ** * **
1600891 GTT-ACAGTAGCAGGATCGATAGCACGCTGAGGGTAACCGGGCCGATCCCCCG-CTTGCGCATCC
66 GTTGA-GGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGAT-CCCCGACTTGCGCATCC
** * * * *
1600954 TGCCCCTCTGGCCAACTGAGCACTCACACGCTGGTTTC--G-TG---GGT-TGA-C-TTAGGCAT
129 TG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCTGGTTGACTGGTATGAGCATTAGGCAT
* * * *
1601010 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTATGGGTGCACATGCTGGGC-TC
193 GCAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCGGTGCACATGCTGGGCTTC
* ** * *
1601074 GGGCATGTGCTGGTGCTACATTTTTTTTCACTCGGGGCACCATCGTCGGAGCATCGCCAGAGAAC
258 GAGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTC-GAGCATCGTCAGAGAAC
** * * * * *
1601139 CTGA-TCGATGGCATTGGGGTTCCGACGATTTGGGGGGGTC--GAGGGTATGCGCAGATGATGTG
322 CTGACT-GGCGGCATTGGGGTTCCGACGA-TTGGAGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
1601201 CGATGGGTGCTGGTACTTAGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
385 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
1601266 ACCCCCTTAAAGAGCATTTGGGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
450 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
1601331 GGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
515 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* * *** **
1601396 TGCATGCTAACAAAAATACAAGGATCATGTCTACCAAGTTTGTTTCCAAAACCTGGTTCTG-AAA
580 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-CTCCTTCTGAAAA
* ** * *
1601460 AATTATTT-AAAAAATCCTTAACCGTAAAAAGTTTCCAAAATCGTTAAAAATAGAGAACGAGTCA
644 AATT-TTTAAAAAAATCC-AAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCA
* *
1601524 TCTTGCCATAAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAAT
707 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1601589 GGCATTGGCATGGAAAAAATATGAAGATGTGCCTAAACCCACCTACGACCCTATCGATCCACGGC
772 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
1601654 TTGCGCATCCCGCCTCTTTGGCCGACGTAGTACCCGCCCGCCCGA
837 TTGCGCATCCCGCCTCTCTGGCTGACGTAGTACCCGCCCGCCCGA
* * *
1601699 TCGTTTCATCGATTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAGGATCAGA-CTGAACCGAG
1 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATC-GGACCGAG
* * *
1601763 GGTT-ACGGTTGCAGGATCGGTAGCACGTAGAGGGGGACCCGATCGAT-CCCTAGCTTGCGCATC
65 GGTTGA-GGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGA-CTTGCGCATC
* * * **
1601826 CTACCCTCTGGCCGGCTGAGCGCCTGCTCGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTC
128 CTGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC-T-GGTTGAC-T-GG--TA-TGAG--C
* *
1601891 ATTCCCAGCCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTG-CGG
184 ATT---AG-----GCATGCAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTC-G
* * *
1601955 GTGCACATGCTGGGC-TCGAGCATGTGCTGGTGCCGCATTTTTTTTCACTCGGGCCACCATCATC
240 GTGCACATGCTGGGCTTCGAGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTC
* * * *
1602019 GGAGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGATACGCCGATTGGAGGGGCC-GGGGGGT
305 -GAGCATCGTCAGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATTGGAGGGGCCGGGGGGGT
* *
1602083 GTGTGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
369 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
1602148 AACTTCCAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTA
434 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
*
1602213 TTAAAGTGTCT-AGAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTT
499 TTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
*
1602277 TTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
563 TTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* *
1602342 AAACTCCTTCTGAAAAAA-TTTTAAAAGAAATCCCAAACCGTAAAAAGTTTTAAAAACCGTAAAA
628 AAACTCCTTCTGAAAAAATTTTTAAAA-AAAT-CCAAACCGTAAAAAGTTTTAAAAATCGTGAAA
* * *
1602406 AATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAACGCTTAAGGGACCATTGTATGAATT
691 AATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT
*
1602471 TACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
756 TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
** * *
1602536 CCTATCGATCCACTACTTGCGCATCTCGCTTCTCTGGCTGACGTAGTACCCGCCCGCCCGA
821 CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGACGTAGTACCCGCCCGCCCGA
** * * *
1602597 TCGTTTCATCGGTTGGCTTAGGCATATAGAGTTCATTCCTAGTCTAGGATTAGATCAGACCGAGG
1 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
* * ** ** * *
1602662 TTTGAGGTAGCAGTATCGACAGCGTGCAGAGGGGGACCCGATCGATCCTCGACTTACGCATCCTG
66 GTTGAGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTG
* *
1602727 CCCTCTGACCGACTGAGCGCCCGCACGCTCGTTTCATAGGTTGACTTAGGCATATGGAGTTCATT
131 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC-T-GGTTGAC-T-GG--TAT-GAG--CATT
*
1602792 CCCAGTCTAAGCATGCAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTCGGTGC
187 ---AG-----GCATGCAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCGGTGC
* * * * *
1602857 ACATGCTGGGCTTAG-GCATGTGCTGGTGCGGCATTTCTTTTCACCCGGGCCACCATCGCCAGAG
244 ACATGCTGGGCTTCGAGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTC-GAG
* * * * * * * *
1602921 CATCGCCAGAGAACCTGACTGGCGGCATTGAGGATACGGCAATTGGAGAGGCCGGGGGGGTGTGT
308 CATCGTCAGAGAACCTGACTGGCGGCATTGGGGTTCCGACGATTGGAGGGGCCGGGGGGGTGTGC
* *
1602986 GCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACC
373 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
1603051 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTACTGCCAGTAGCCATTAA
438 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
1603116 TGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGC
503 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
*
1603181 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACT
568 TGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* *
1603246 CCTTCTGAAAAAATTTTTAAAAAAATACCGAATCGTAAAAAGTTTTAAAAA-CTGTGAAAAATAG
633 CCTTCTGAAAAAATTTTTAAAAAAAT-CCAAACCGTAAAAAGTTTTAAAAATC-GTGAAAAATAG
* *
1603310 AAAAC-ATGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAACGGACCATTGTATGAATTTACA
696 AAAACGA-GTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
1603374 AGCCATAAAAATGGAATTGTCTTGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
760 AGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
1603439 TCGATCCACGGCTTGCGCATCCTGCCTCTATGG-TCGACATAGTGCCCGCCCGCCCACCTGC
825 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCT-GACGTAGTACCCGCCCG--C-CC-GA
* * * * ** * *
1603500 TCGTTTCGTCAGTTGGTTTAAGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGACTGAGG
1 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
* * * * * * *
1603565 GTTGTGGTAGTAGGATCGGCAGCACGCAGAAGGGGACCC-AGCTGATCCCCGA-TGTGTGCATCA
66 GTTGAGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATC-GATCCCCGACT-TGCGCATCC
* * *
1603628 TGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTC-TTT-TTG-TG---GGT-CGA-C-TTAGGCAT
129 TG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCTGGTTGACTGGTATGAGCATTAGGCAT
* * ** * *
1603684 ACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGTGGGTGCACATGTTGGG-TTC
193 GCAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCGGTGCACATGCTGGGCTTC
* * *
1603748 GAGCATGTGCTGGTGCCACA-TTTTTTTCGCTCGGGGCA-C--CGTC-A-C--CG---GAGAACC
258 GAGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTCGAGCATCGTCAGAGAACC
* * * *
1603802 T-AATCGACGGCATTGGGGTTTCGACGATTGGAGGGCGCGGGGGGGGGGTGTGCGCACATGATGT
323 TGACT-GGCGGCATTGGGGTTCCGACGATTGGAGGG-GC--CGGGGGGGTGTGCGCACATGATGT
*
1603866 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCGT-AAGAACTC
384 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-TCGAGAACTC
*
1603930 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAA
448 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
1603995 ATGGGGACACTTTTTTCAACTGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTTAATTTTTT
513 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * *** * *
1604060 TGGGCAGGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGATAAAAAATACTTCT-AAA
578 TATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * *
1604124 AAAATTTTAAAAAAATCTGC-AACCGTAAAAAGTTTTGACAATCGT-AAACAATAGAAAATGAGT
643 AAATTTTTAAAAAAATC--CAAACCGTAAAAAGTTTTAAAAATCGTGAAA-AATAGAAAACGAGT
*
1604187 CATCTTGCCATGAAATTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
705 CATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
1604252 ATGGCATTGGCATTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACG
770 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
1604317 GCTTACGCATCCCGCCTCTCTGGCTGGCATAGTGCCCGCCTGTCCTCCCGC
835 GCTTGCGCATCCCGCCTCTCTGGCTGACGTAGTACCCG-C---CCGCCCGA
* * ** *
1604368 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGA-CTGAACC-AG
1 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATC-GGACCGA-
* * * *
1604431 GGGTTGCGGCAGCAGGATCGGTAGCACG-ATGAGGGGGACCCAATCGATCCCCGGCTTGCGCATC
64 GGGTTGAGGTAGCAGGATCGGTAGCACGCA-GAGGGGGACCCGATCGATCCCCGACTTGCGCATC
* * * *
1604495 CTACCCCTCTGGCCGGCTGA--GCCCGTACGCTC-ATTC-CG-TG---GGT-TGA-C-TTAGGCA
128 CT-GCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCTGGTTGACTGGTATGAGCATTAGGCA
* * *
1604549 TACAGAGTTCATTCCCAATCTTAGATCGGACCAGACCGAGGGTTG-CGGGTGCACATGCTGGGC-
192 TGCAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTC-GGTGCACATGCTGGGCT
** * * *
1604612 TCGAGCATGTGCTGGTGCCTTATTTTTTTTTCTCCCAGGGCACCATCGTCGAAGCATCATCAGAG
256 TCGAGCATGTGCTGGTGCCGCA-TTTTTTTTCACCCGGGGCACCATCGTCG-AGCATCGTCAGAG
* * * ** *
1604677 AACTTGACCGGCGGCATTAGGGTTCCGGTGATTGG-GGGGCCGGGAGGGTGTGCGCACATGATGT
319 AACCTGACTGGCGGCATTGGGGTTCCGACGATTGGAGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
1604741 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTGTCCCTCATCAAACCTTGAGAACTCA
384 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
1604806 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAA
449 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
1604871 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
514 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
1604936 GTGCATGCCAA-AAAAAAACAAGGATCATGTCCACCAAGTTTGGGGCCAAAACTCCTTCTG-AAA
579 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * * *
1604999 AATTTTTTAAAAAATCTCGATCCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCAT
644 AATTTTTAAAAAAATC-CAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCAT
*
1605064 CTTGCCATGAAACTTCCCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
708 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1605129 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
773 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
1605194 TGCGCATCCCGCCTCTCTGGGC-GGCGTAGTGCCCACCCGTCCGCCC-A
838 TGCGCATCCCGCCTCTCT-GGCTGACGTAGT----ACCCGCCCGCCCGA
* * *
1605241 CTCATTTCATCGGTTGGCTTAGGCATACGGAGCTCATTCCCAGTCTAAGATCAGAT-----CGA-
1 -TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAG
* * *
1605300 -----A--T-----G--C--T--------GAGGGGGACCCGATCGATCCTCGGCTTGCACATCCT
65 GGTTGAGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCT
*
1605341 GCCC-CATTGGCCGGCTGTGCGCCCGCACGCTCGTTTC--G-T-A--GGT-TGA-C-TTAGGCAT
130 GCCCTC--TGGCCGGCTGAGCGCCCGCACGCTCGTTTCTGGTTGACTGGTATGAGCATTAGGCAT
* * * * * * *
1605396 ACAAAGCTCATTCCTAGTCTAAGATC-GATCAGACCGAGGGTT-ACGAGTGCACATGTTGGGC-T
193 GCAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCG-GTGCACATGCTGGGCTT
* * * * **
1605458 CGAACATATGCGGGTGTCGCATTTTTTTTTGCCCGGGGCACCA---TC--G--TCG---GAGAAC
257 CGAGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTCGAGCATCGTCAGAGAAC
* * * * *
1605513 CTGAAC-GACGACATTAGGGTTCTGACGATTGGGGGGTGCC-GGGGGGTGTGCGCACATGATGTG
322 CTG-ACTGGCGGCATTGGGGTTCCGACGATTGGAGGG-GCCGGGGGGGTGTGCGCACATGATGTG
** * *
1605576 CGATGGGTGCTGGTACTTGGAACTTATATTGGCCCCCTATCCCTCATCAAACCTTGATAACTCAC
385 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
1605641 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
450 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
1605706 GGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTGTG
515 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
* ** * *
1605771 TGCATGCCAACAAAAATACAAGGATCACATCTACCATTTTTAGGGCCAAAACTCTTTCT-AAAAA
580 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * *
1605835 AATTTAAAAAAAATCCCAAACCGTAAAAAGTTTTAAAAAT-GATGAAAAATAGAAAACGAATCGT
645 ATTTTTAAAAAAAT-CCAAACCGTAAAAAGTTTTAAAAATCG-TGAAAAATAGAAAACGAGTCAT
* * *
1605899 CTTGTCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCCAAAAAAATG
708 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1605964 GGATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
773 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * ** *
1606029 TGCGCATCCCGCCTCTCTGG-TCGGCGTAGTGCCCACTCGTTCGC
838 TGCGCATCCCGCCTCTCTGGCT-GACGTAGTACCCGCCCGCCCGA
* * * *
1606073 TCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGG
1 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
* * * *
1606138 GTT-ACGGTAGTAGGATCGGTAGCACGCTGAGGGGGACCCGACCGATCCCCAACTTGCGCATCCT
66 GTTGA-GGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCT
* * * *
1606202 GCCCCTCTGGCTGGCTGAGCGCCCGCAGGCTCATTTC--G-TG---GGT-TGA-C-TTAGGCATA
130 G-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCTGGTTGACTGGTATGAGCATTAGGCATG
* * * * * * *
1606258 CGGAGTTCATTCCTAGTTTAAGATCGGATCGGACTGAGGGTTGTGGGTGCACATGCTGGGC-TCG
194 CAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCGGTGCACATGCTGGGCTTCG
* * * * *
1606322 GGCATGTGCTGGTGTCGCATTTTGTTTT-GCCCGGGGCACCTTCGTCGGAGCATCGTCGGAGAAC
259 AGCATGTGCTGGTGCCGCATTTT-TTTTCACCCGGGGCACCATCGTC-GAGCATCGTCAGAGAAC
* * *
1606386 CTGACTGGCGGCATTGGGGTTCCTG-TGATT--AGGGGGCGGGGGGGTGTGCGCACGTGATGTGC
322 CTGACTGGCGGCATTGGGGTTCC-GACGATTGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGC
*
1606448 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
386 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
1606513 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATG
451 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1606578 GGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTTGCGTTTTT-GACTGAATTTTTTTA
516 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG-CTGAATTTTTTTA
*
1606642 TGCATGCCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TCCCTTCTGAAAA
580 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCTGAAAA
* *
1606706 AA--TTTAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCAT
644 AATTTTTAAAAAAAT-CCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCAT
*
1606769 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATG
708 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1606834 GCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACGG
773 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
1606897 TGTCATGAGC
Statistics
Matches: 4541, Mismatches: 478, Indels: 361
0.84 0.09 0.07
Matches are distributed among these distances:
831 57 0.01
833 29 0.01
834 225 0.05
835 248 0.05
836 5 0.00
838 1 0.00
841 3 0.00
842 1 0.00
843 3 0.00
844 64 0.01
845 46 0.01
846 49 0.01
847 3 0.00
849 1 0.00
851 1 0.00
852 1 0.00
853 1 0.00
854 1 0.00
856 1 0.00
861 97 0.02
862 65 0.01
863 6 0.00
865 4 0.00
866 133 0.03
867 9 0.00
868 339 0.07
869 268 0.06
870 185 0.04
871 267 0.06
872 39 0.01
873 133 0.03
874 303 0.07
875 223 0.05
876 3 0.00
877 21 0.00
878 81 0.02
879 28 0.01
880 1 0.00
882 2 0.00
883 2 0.00
884 1 0.00
886 3 0.00
887 1 0.00
889 1 0.00
890 4 0.00
892 1 0.00
893 2 0.00
894 2 0.00
896 3 0.00
897 21 0.00
898 921 0.20
899 483 0.11
900 10 0.00
901 2 0.00
902 5 0.00
903 105 0.02
904 27 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGG
GTTGAGGTAGCAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCTG
CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCTGGTTGACTGGTATGAGCATTAGGCATGCA
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTCGGTGCACATGCTGGGCTTCGAG
CATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGTCGAGCATCGTCAGAGAACCTGA
CTGGCGGCATTGGGGTTCCGACGATTGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTT
AAAAAAATCCAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCAT
GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGCCTCTCTGGCTGACGTAGTACCCGCCCGCCCGA
Found at i:1612799 original size:26 final size:26
Alignment explanation
Indices: 1612762--1612814 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1612752 GTTGACTTAG
*
1612762 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1612788 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1612814 G
1 G
1612815 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1614953 original size:871 final size:873
Alignment explanation
Indices: 1612788--1623917 Score: 11989
Period size: 875 Copynumber: 12.7 Consensus size: 873
1612778 CCCAGTCTAA
* * * ***
1612788 GCATACGAAGTTCATTCCCAGTCTAAGATCAG-AT-TGGA--CTGAGGGTTGTGGCCACACATGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTATCCGGATGC-GAGGGTTGCGGGTGCACATGC
* * * * * *
1612849 TGGGCTCGGGCATGGGCTGGTGCCGCATTTTTTTTCGCCCGGGCCACCATCGTCGGAGTAACGCC
65 TGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCCGGGGCACCATCG-CTGAGCATCACC
** * * * *
1612914 AAAGAACATGACTGGCGGCATTGGGGTTCCGGCGATTCGGGGGGCCAGGGGGTGTGCGCACATGA
128 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGA
* *
1612979 TGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
1613044 TCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
1613108 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTACGAGTTTTTAGCTGAATTTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTT
* * *
1613173 TTTATGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTATGA
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * * *
1613238 AAAAA-TTTGAAACAATCTCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTC
453 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
1613302 GTCTTGCCTTGAAACTTCACATGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAA
518 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * ** * *
1613367 TGGCATTGGCATTGCAAAAATATGAAGATGTACGAAAACCCACCTACGACCTTATCGATCCACGG
583 TGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
1613432 CTTGCGCATCCCGCCTCTCTGGCTTGCGTAGTGCCCACTCGCCCGCCCGTTTGTTTCATCGGTTG
648 CTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTG--C-C-CGCCCGCCCGCTCGTTTCGTCGGTTG
* * * *
1613497 GCTTAGCCATACGGAGTTCATTCCCTGTCTAAGATCAGACTAGACCGAGGGCTGC-GACAGCAGG
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCAG-CAGCAGG
* * * * * * *
1613561 ATTGGCAGCAAGCTGAGGGGGACTTGGTCGATCCCCGGCTTGCTCATCCTGCCCCTCTAGCTGGC
773 ATCGGCAGCACGCTGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
** * *
1613626 TGAATGCCCGCACGCTCATTTCATTGGGTTGACTTAG
838 TGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAG
* * * *
1613663 GCATACAGAGTTCATTCCCAGTATAAGATCAG-A-CCGGAT-CGAAGGTTGCGGGTGCACATGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTATCCGGATGCGAGGGTTGCGGGTGCACATGCT
* * ** * * *
1613725 GGGTTTGGGCATGTGCTGGTGTTGCATTTTTTTTCACCCGGGGCACCATCGCTGGAGCATCGCTG
66 GGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCCGGGGCACCATCGCT-GAGCATCACCG
* * * * *
1613790 GAGAACCTGACTGACAGCATTGGGGTTCCGGTGATTGGGGGGGTCGGGGGGTGTGCGCACATGAT
129 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
1613855 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
1613920 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
1613984 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTACGAGTTTTTAGCTGAATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTT
* *
1614049 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCTGAA
389 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * * * **
1614114 AAAATTTGAAAACAATCTCGAACCATAAAAAGTTTCGAAAATTGTGAAAAATAGAAAACGAGTCG
454 AAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
1614179 TCTTGCCTTGAAACTTCACATGAAGGCTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * ** * * *
1614244 GGCATTGGCATTGCAAAAATATGAAGATGTACCAAAACCCACCTATGACCTTATCAATCAACGGC
584 GGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
1614309 TTGCGCATCCCGCCTCTCTGGCTTGCGTAGTGCCTGCCCGCCTGCTCATTTCATTGGTTGGCTTA
649 TTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * * * **
1614374 GCCAGACGGAGTTCATTCCCTA-TCTAAGAAGAGACTAAACTGAGGGTGGCAGCAGTAGGATCAA
714 GGCATACGGAGTTCATTCCC-AGTCTAAGATCAGACTAGACTGAGGGTTGCAGCAGCAGGATCGG
* * * * * * *
1614438 TAGCACGCTGAGGGAGACCTGGCTGATCCCCTGCTTGCGCATCTTACCCCTCTGGCCGGCTGAAC
778 CAGCACGCTGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
*
1614503 GCCCCCACGCTCGTTTCGTGGGTTGACTTAG
843 GCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *** * *
1614534 GCATACGGAGTTCTTTCCCAGTCTAAGATCAG-A-CCGGAT-TGAGGGTTGCAAATGCACAAGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTATCCGGATGCGAGGGTTGCGGGTGCACATGCT
* * * * *
1614596 GGGCTGGGGCATGTGCTGGTGCTGCATTTTTTTC-CCCTGGGGCATCATTGCTGGATCATCACCG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCC-GGGGCACCATCGCT-GAGCATCACCG
* * *
1614660 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGAGGCCGGGGGGTGTGCGCACATGAT
129 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGAT
* *
1614725 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACT
194 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
1614790 CACACCCCCTTAAAGAGCATTTGAGGTTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGA
259 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1614855 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
324 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
1614920 TTGTGAATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGCCCAAAAATCCTTCTGAA
389 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * *
1614985 AAAATTTTCAAAAAATC-CTAAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
454 AAAATTTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
1615049 GTCTTGCCATGAAACATCACATGAA-GCATTAAGGGACCATTGCATGAATTTACAAGCCATAAAA
518 GTCTTGCCATGAAACTTCACATGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
1615113 ATGGCATTGGCATGGCAGAAATATGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCATG
582 ATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
1615178 GCTTGCGCATCCCACCTCTCTGACCGGCGTAGTGCCCGCCCGTCCGCCCACTCGTTTCGTCGGTT
647 GCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCG--C--CCGCCCGCTCGTTTCGTCGGTT
* ** * * * *
1615243 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTAGACCAAGGGTTACGGTAGTAGG
708 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCAGCAGCAGG
* * * ** * *
1615308 ATCGGCAGCACGTTGAGGGGGACCCGGCCGATCCCCAGCTAACGCATCCTGGCCCTCCGGCCGGC
773 ATCGGCAGCACGCTGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
* *
1615373 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAT
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
1615409 GCATACGGAGTTCATTCCTAGTCTAACCATACGGAGTTCATTCCCAATCTAAGATTGGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAA-GAT-C--AG-T-A-T--C---C-------GGA-T-G--
* * ** * *
1615474 CGAGGGTTGCAGGTGCACATGCTGGGCTAGGGCATGTGCTGGTGCCATATTTTTTTTCGCTCGAG
43 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCCGGG
* *
1615539 GCGCCATCG-TCG-G-A-CA----AG---CTGACCGGTGGCATTGGGGTTCCGGCGATTGGGGGG
107 GCACCATCGCT-GAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGG
* * * *
1615593 G-TGGGGGGTGTGCGCA-A--ATGTGCGATGGGTACTGGTACTTGGCCCTATTTATTGGCCCCCA
171 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT-TATATTGGCCCCCT
* *
1615654 ATCCCCCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
235 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
1615719 GCCAGTAGCAATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCAC-AAA--C--T---
300 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACA
1615776 -TT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
365 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
1615839 TTTGGGGCCAAAAATCCTTCTGAAAAAA-TTTAAAAAAAACCCAAACCGTAAAAAGTTACAAAAA
430 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
* * * * * * * *
1615903 TCGTGAAAAATAAAAAATGAGTTGTCTTGCGAAGAAACTTCACATAAAGGCTTAAGGGACCGTTG
495 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* * *
1615968 TATGAATTTACAAGCCAT-AAAATGGTATTGGGATGGCAGAAATATGAAGATGTGCCTAAACCCA
560 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCA
* * * * *
1616032 CCTACCACGCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGC
625 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTG--C-C-CGC
* *
1616097 CCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGA-TC
686 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-
* * * * * * *
1616161 AGA-TCGAGGGTTCCGGTAGAAGGATCGACAGCACGCTGAGGGGGACCCT-ACCGATCCCTGGCT
750 AGACT-GAGGGTTGCAGCAGCAGGATCGGCAGCACGCTGAGGGGGA-CCTGGCCGATCCCCGGCT
* * * * *
1616224 TGCACATCCTGCCCCTTTAGCCGGCTGAGCGTCCGCACGCTCGTTTCATGGGTTGACTTAG
813 TGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * * ** * *
1616285 GCATATAGAGTTCATTCCCAGTCTAAGATC-GGA-CC-CAACCGAGGGTTGCGAGTGAACATGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTATCCGGATGCGAGGGTTGCGGGTGCACATGCT
* *
1616347 GGGCTCGGGCATGTGTTGGTGCCGTATTTTTTTTCGCCC---G----A-CGC--A-C-T------
66 GGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCCGGGGCACCATCGCTGAGCATCACCGG
* * * *
1616394 -G----T------CAGCATTGAGGTTCAGGCGATT-GGGGGGCC-GGGGGTGTGCGCACTTGATG
130 AGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
1616446 TGCGATGGTTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAATCCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
1616510 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
1616574 ATGGGGACATTTTTTTTAAATGGTCACAAAATCCTATGCACTTCGAGTTTTTAGTTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
1616639 TGTGCATGCTAACAAAAATACAAGGATCACATCTTCCAAGATTGGGGCCAAAACGT-CTTCTGAA
390 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCTGAA
* * ** **
1616703 AAAATTTTAAAAATATCCCGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCG
454 AAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * * *
1616768 TCTTGCCATGAAAATTCAAATGAAGGCTTAAGGGACTATTGTATGAATTTTCCAGCCATAAAAAT
519 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
1616833 GGCATTGGCATGGCAGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
584 GGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * * * **
1616898 TTGCGCATCCCACCTCTCTAACTGGCATAGTGCCCACCCACTCGCCCGCTCATTTCGTCATTTGG
649 TTGCGCATCCCGCCTCTCTGGCTGGCGTAGTG-CC-CGC-C-CGCCCGCTCGTTTCGTCGGTTGG
* * * * ** *
1616963 CTTAGGCATAAGGAGTTCATTCCCGGTCTAAGACCAGACTGGACTGAGGGTTGTGGTAGCAGGAT
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCAGCAGCAGGAT
* * * * ** * *
1617028 CTGCAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTATGCATCTTGCCCCTCTGGCCGACTG
775 CGGCAGCACGCTGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
1617093 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1617127 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-----T---A-TC------CGGAT--G--
* ** * * ** *
1617192 CGAGGGTTGCGGTTGCACATGCTGCACTCGCGCATGTGCTGGTGCCGCATTATTTTCGCTTGAGG
43 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGG
* * * *
1617257 CACCA------A-CGT---CGGAGAACCTAACCGGCGACATTGGGTTTCCGGCGATT--------
108 CACCATCGCTGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGC
* * ** *
1617304 -GGGGGGTATGCGCACATGATGTGCGATGGGTGGTGGTACTTATCCCTTATATTAGCCCCCTATC
173 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
1617368 CCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCC
238 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
1617433 AGTAGCCATTAAAGTGTCTGAAATGGGGAAAC-TTTTTCAAATTGTCACAAAATCC-AGTACACT
303 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTA-TACACT
* * * * * *
1617496 TCGAGTTTCTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATGCAGGGATCACGTCTACCAGGTT
367 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
* * * ***
1617561 TGGGGCCAAAACTCCATCTAAAAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTTGCAAATC
432 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATC
1617626 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
497 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* *
1617691 TGAATTTACAAGCCATAAAAATGGCAATGGCATGACAAAAATATGAAGATGTGCCTAAACCCACC
562 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACC
* * * *
1617756 TACCACCCTATCGATCCATGGCTTGCGCATCCCGCTTCTCTGGCCGGCATAGTGCCCGCCCGATC
627 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCG-CC---C
* * * *
1617821 GCCCGTTCGTTTCGTCGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGAATGA-ACCAG
688 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACTAG
* * * * * ** *
1617885 ACCGAGGGTTGCAGTACCAAGATTGGCAGCACGCTGAGGGGGATCC-AACCGATCCCCAGCTTGC
752 ACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCTGAGGGGGA-CCTGGCCGATCCCCGGCTTGC
* * * * *
1617949 ACATCTTGCCCCTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAG
816 GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1618007 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAGGCATACAAAGTTC
1 GCATACGGAGTTCA-T-----TC----C---C--AG-TC--T----A---A-G-AT-C--AG-T-
*
1618072 ATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGC
34 A-T-CC-G-----GAT--G-------CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGC
* ** * ** * *
1618137 TGGTGTCATATTTTTTTCGCTCATGGCA-C--CG-T---CGTCA---GAGAACTTGACCGGCGGC
82 TGGTGCCGCATTTTTTTCGCCCGGGGCACCATCGCTGAGCATCACCGGAGAACCTGACCGGCGGC
* * *
1618192 ATTGGGGTTCCGACGATT---------GGGGGGTGTACGCACATGATGTGCGATGGCTGCTGGTA
147 ATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
1618248 CTTGGCCCTTATATTGGTCCCCTATCCGTCAACAAACCTAGAGAACTCACACCCCCTTAAAGAGC
212 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
1618313 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
277 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
*
1618378 AAATGGT--C---A--C-A-A-ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCAAAA
342 AAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
1618433 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAAA-TTTAAAAAAATCT
407 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT
* *
1618497 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCA
472 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
1618562 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCATGGCAAAA
537 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAA
* * * *
1618627 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGACTTGTGCATCCCACCTCTC
602 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * * * *
1618692 TGGCCGACGTAGTGCTCGTCTGCCCGCCCGCTCGTTTCGTCGGTTTGCGTAGGCATACAGAGTTC
667 TGGCTGGCGTAGTGC-C--C-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* * ** * * * *
1618757 ATTCCCAGTCTAAGATTAGACCAGACCAAGGGTTACGGCAGTAGGATCGGCAGCACGCAGAGGGG
728 ATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCTGAGGGG
* * * **
1618822 GAACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCCCCCAAACGCTCGT
793 G-ACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
**
1618887 TTCGAAGGTTGACTTAG
857 TTCGTGGGTTGACTTAG
* * * *
1618904 GCGTACGGAGTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAATCTAAGATCGGACCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAG---AT-CAG-T-A-T--C---C--GGAT--G--CG-A-
* * * * * * *
1618969 TGAGAGTTACGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGTCGCATTTTTTTCACCCGAGC
46 -G-G-GTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGG
* * ** * * * * *
1619034 CACCATCACTTGAGCATCGCTAGAGAACTTGATCGGCAGCATTGGCGTTCCGGCAATTGGGGGGG
108 CACCATCGC-TGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGG
* * * * *
1619099 CCGAGGGGAGGTGTGCGCATAGGATGTGTGATGGGTGCTAGTACTTGGCCCTGATATTGGCCCCC
172 CC--GGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *
1619164 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTCAAGAGCATTAGAGATTTTACAGG-TT--
234 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1619226 TG-C--T---C--T--A-------AAATGGGGACACTTTTTTCAAATGGTCAC-AAA--C--T--
299 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATAC
* * *
1619267 --TT-GAGTTTTTAGCTTAGTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACGAA
364 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * *
1619329 GTTTGGCGCCAAAAATCCATCTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
429 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* *
1619394 ATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
494 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* * *
1619459 GCATGAATTTACAAGCCATAAAAATGGCATTGGGATGGAAAAAATATGAAGATGTGCCTAAACCC
559 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCC
* * * * *
1619524 ACATACCACCCTACCGATCCACGACTTGCGCATCCCGCCTCTTTGGCCGGCGTAGTGCCCGCCTT
624 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCG-C--
* * *
1619589 CCTGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACT
686 CC-GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
* * *
1619654 GGACTGAGAGTT-----A-C-GG-T-------A-GC--A---GGA--T--CAG-T---CGGCTTG
750 AGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCTGAGGGGGACCTGGCCGATCCCCGGCTTG
* * *
1619690 CGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTCGACTTAG
815 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
1619749 GCATACGGAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAATCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-T-A-T--C---C---G---G-AT--G--
* * * *
1619814 CGAGGGTTACGGGTGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCAGG
43 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCCGGG
* * * * * *
1619879 GCACCATCGTCGGAGCATCACCGTAGAACCTGACTGACGGCATTGGGGTTTCGGTGATTGGGGGG
107 GCACCATCG-CTGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGG
* * *
1619944 GCCTGGGGGGCTGTGCGCACATAATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTAGCCCCC
171 GCC-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * *** * *
1620009 TATCCCCCATCAAACCTTGAGAACTCACACATTCTTAAAGAGCATTTGAGAATTTACAGGTTTAC
234 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
1620074 TGCCAGTAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATAC
299 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATAC
* * * *
1620139 ACTTCAAGTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGACCACGTCTACCAA
364 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
1620204 GTTTGGGACCAAAACCCCTTTTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
429 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* *
1620269 ATCATGAAAAATAGAAAACGGGTGGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
494 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* *
1620334 GCATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
559 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCC
* * * * *
1620399 ATCTACCACAAC-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
624 ACCTACCAC-CCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCGCCC
* *
1620463 GCCCACCCACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
688 G----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
** * * * * * * *
1620528 CGGACCGAGGGTAGCAGCAGCAAGATTGGCAGCACACTGAGGGGGACTTAGCCGATCCCCGGCTT
749 TAGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACGCTGAGGGGGACCTGGCCGATCCCCGGCTT
* * * * * *
1620593 GCGCATCCTGCCCCTCTGGCCGACTGAGTGCCCGCACGCTCCTTTCATGAGTTGACTTAA
814 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
1620653 GCATACGAAATTCATTCCCAGCCTAGGCATACGGAGTTCATTCCGAGTCCAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-T-A-TCC--G-----GAT--G--C-GA-
* ** **
1620718 CGATGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCTTCATTTTTTTCGGACGGGG
46 -G--GGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGG
* ** * * ** *
1620783 CACCATCGCCAGAGCATCGTCAGAGAACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGAGG
108 CACCATCG-CTGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGG
* *
1620848 CCGGGGGGGTGTGCGCACATGATGTGCGATGTGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
172 CC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1620913 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTG
236 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
1620978 CCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
301 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACAC
** * *
1621043 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGTGAACAAAAATACAAGGATCACATCTACCTAGT
366 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
1621108 TTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAAATCTCGAATCGTAAAAAATTTCAAAAAT
431 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAT
*
1621173 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACATGAAGGCTTAAGGGACCATTGT
496 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* * * * *
1621238 ATGAATTTAGATGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGTTGTGCCTAAACCCAC
561 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCAC
* * * * * *
1621303 CCACCACCCTATCGATCAACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCTGCTCGTC
626 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCGCCCGCC
* * * * *
1621368 CGCTCGTTTCGTCGATTGGCTTCGGCACACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGGCTG
691 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTG
* * * * *
1621432 AGGGTTGCAGCCGCAGGATCAGCAGCACGTTGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
756 AGGGTTGCAGCAGCAGGATCGGCAGCACGCTGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATC
* * * *
1621497 CTG-CCCTCTGGCCGGTTGAGTGCCCGCACGTTCGTTTTGTGGGTTGACTTAG
821 CTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
1621549 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-A-CCGGA-CCGAGGGTTGGGGGTGTACATGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTATCCGGATGCGAGGGTTGCGGGTGCACATGCT
* * ** * * * *
1621611 AGGCTCAGGCATGTGCTGGTGCCATATTGTTTTTTGTCCGAGGCACCATCGCTAGAGCATCATC-
66 GGGCTCGGGCATGTGCTGGTGCCGCATT-TTTTTCGCCCGGGGCACCATCGCT-GAGCATCACCG
* * *
1621675 G-G---TTGACCGGCGGCATTGGGTTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACAAGA
129 GAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCC-GGGGGGTGTGCGCACATGA
* * *
1621736 TGTGCGATGGGTGCTTGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1621801 TCACACCCCCTTAAAGAGCATTTGATATTTTACAGGTTGGCTACCAGTAGCCATTAAAGTGTCTG
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
1621866 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAA-TTT
** * * * * *
1621931 TTTTGTGCATGTGAACAAAAATACAATGATCACATTTACCTAGTTTGGGGCCAAAACTCCATCTG
387 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* * *
1621996 AAAAAATTTTTAAAAAATCTTGAATCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
452 AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
*
1622061 CGTCTTGCCATGAAACCTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
517 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * * * * * *
1622126 ATGGCATTGGCATGGTAGAAATATGAAGTTTTGCCTAAACCCACCCATCACCCTATCAATCAACA
582 ATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * ** ** * *
1622191 GCTTGCACGTCCCATCTCTCTGG-TCGGCGTAGTGCCCGGTCGTCCGCTCGTTTCGTCGATTGGC
647 GCTTGCGCATCCCGCCTCTCTGGCT-GGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
1622255 TTCGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGGCTGAGGGTTGCAGCAGCAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCAGCAGCAGGATC
* * ** * * * * * * * *
1622319 AGCAGCACGTTGAGGGCAACCTAGTCGATTCCCGGTTTACGCATCTTGCCCCTCTAGCCGACTGA
776 GGCAGCACGCTGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
*
1622384 GTGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
1622417 GCATACGGAGTTCATTCCCAGTCTAAGATCAG--GCCGGA-CCGAGGGTTGCAGGTGCACATGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTATCCGGATGCGAGGGTTGCGGGTGCACATGCT
* * * * * * * * ***
1622479 AGGCTCGAGCTTGCGTTGGTGTCGCATTTTTTTCGCCCAGGGCACCATCGCCGGAGCATCGTTGG
66 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGGCACCATCG-CTGAGCATCACCGG
* *
1622544 AGAACCTGACCGGCGACATTGGGGTTCTGAG-GATTGAGGGGGGCCGGGGGGTGTGCGCACATGA
130 AGAACCTGACCGGCGGCATTGGGGTTCCG-GCGATTG-GGGGGGCCGGGGGGTGTGCGCACATGA
*
1622608 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1622673 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTGGCTGCTAGTAGCCATTAAAGTGTCTA
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
1622738 AAATGAGGACACTTTTTTCAAATGGTCAAAAAATCCTATACACGTCGAGTTTTTAGCTGAATTCT
323 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTT
*
1622803 TTTGTGCATGCCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-A
388 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * * *
1622867 AAAAAATTTAAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
453 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
1622932 ATCTTGCCATGAAACTGCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
518 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* ** *
1622997 CGGCATTGGCACAGCAAAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
583 TGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
1623062 CTTGCGCATCCTGCCTCTCTGGCTGGTGTAGTGCCCGACCGCCTGTTCGTTTCGTCGGTTGGCTT
648 CTTGCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
1623127 TGGCATACGAAATTCATTCCCAGTCTAAGATC-GATCT-GAACTGAGGG-T-CCGACAGCAGGAT
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTAG-ACTGAGGGTTGCAG-CAGCAGGAT
* *** * * * *
1623188 TGGCAGCACGCTGAGTCAGACCTAGTCGATCCCCGACTTGGGCATCCTGCCCCTCTGGCCGGCTG
775 CGGCAGCACGCTGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* *
1623253 AACGCCCGCACGCTCATTTCGTGGGTTGACTTAG
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
1623287 GCATGCGGAGTTCATTCCCAGTCTAAGCATAAGGAATTCATTCCCAGTCTAAGATTAGATCGGAA
1 GCATACGGAGTTCATTCCCAGTCTAAG-ATCA-G---T-A-T--C---C---G----GAT--G--
* *
1623352 CGAGGGTTTCGGGTCCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTGTTTTCGCCCGGG
43 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT-TTTTCGCCCGGG
* *
1623417 GCACCAT--C---GC--CA---GAG-ACTGTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGG
107 GCACCATCGCTGAGCATCACCGGAGAAC-CTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGG
* *
1623471 GCC-GGGGGTGTGCGCACATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTA
171 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
1623535 TCCCTCAGCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
236 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
1623600 CCAGTAGCCATTAAAGTGTCTGAAATAGGCACACTTTTTTCAAATGGTCACAAAATCCTATACAC
301 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACAC
** * *
1623665 TTCGAGTTTGAAGCTGAATATTTTTGTGCATG-CAATAAAAAATACAAGGATCACGTCTACCAAG
366 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA-CAAAAATACAAGGATCACGTCTACCAAG
* * * *
1623729 TTTGGGTCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCTCGAACCGTAAAATGTTTTAAAAA
430 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAA
*
1623794 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
495 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
*
1623859 TATGAATTTACAAGCCAT-AAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTAA
560 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAA
1623918 NNNNNNNNNN
Statistics
Matches: 8828, Mismatches: 1062, Indels: 721
0.83 0.10 0.07
Matches are distributed among these distances:
830 103 0.01
831 51 0.01
832 7 0.00
833 28 0.00
835 1 0.00
837 1 0.00
838 1 0.00
839 2 0.00
840 84 0.01
841 106 0.01
842 272 0.03
843 7 0.00
844 3 0.00
845 237 0.03
846 65 0.01
847 4 0.00
848 3 0.00
849 5 0.00
850 63 0.01
851 1 0.00
853 1 0.00
854 4 0.00
855 1 0.00
856 1 0.00
857 2 0.00
858 1 0.00
859 2 0.00
860 1 0.00
862 1 0.00
863 1 0.00
864 1 0.00
865 30 0.00
866 239 0.03
867 447 0.05
868 168 0.02
869 11 0.00
870 575 0.07
871 633 0.07
872 374 0.04
873 14 0.00
874 120 0.01
875 1217 0.14
876 496 0.06
877 103 0.01
878 95 0.01
879 61 0.01
880 512 0.06
881 77 0.01
882 34 0.00
883 5 0.00
884 292 0.03
885 128 0.01
886 49 0.01
887 34 0.00
888 123 0.01
889 4 0.00
890 17 0.00
891 42 0.00
892 2 0.00
893 8 0.00
894 106 0.01
895 8 0.00
896 413 0.05
897 242 0.03
898 61 0.01
899 12 0.00
900 11 0.00
901 50 0.01
902 482 0.05
903 77 0.01
904 134 0.02
905 3 0.00
906 247 0.03
907 12 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (873 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGTATCCGGATGCGAGGGTTGCGGGTGCACATGCT
GGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCCCGGGGCACCATCGCTGAGCATCACCGGA
GAACCTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGCCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCAGCAGCAGGATCGGCAG
CACGCTGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:1615459 original size:26 final size:26
Alignment explanation
Indices: 1615410--1615460 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1615400 TTGACTTATG
* *
1615410 CATACGGAGTTCATTCCTAGTCTAAC
1 CATACGGAGTTCATTCCCAATCTAAC
1615436 CATACGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATTCCCAATCTAA
1615461 GATTGGACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAC
Found at i:1617163 original size:26 final size:26
Alignment explanation
Indices: 1617127--1617179 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1617117 GTTGACTTAG
1617127 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1617153 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1617179 G
1 G
1617180 ATCGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1618037 original size:26 final size:26
Alignment explanation
Indices: 1618007--1618085 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
1617997 GTTGACTTAG
1618007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1618033 GCATACGGAGTTCATTCCCAATCTAG
1 GCATACGGAGTTCATTCCCAGTCTAA
**
1618059 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1618085 G
1 G
1618086 ATCGGATCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1619778 original size:26 final size:26
Alignment explanation
Indices: 1619749--1619801 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1619739 GTCGACTTAG
*
1619749 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1619775 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1619801 G
1 G
1619802 ATCGAATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1626528 original size:26 final size:26
Alignment explanation
Indices: 1626492--1626545 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
1626482 TGGGTTGACT
*
1626492 AGCATACGGAGGTT-ATTCCCAGTCTA
1 AGCATACGGA-GTTCATTCCCAATCTA
*
1626518 AGCATGCGGAGTTCATTCCCAATCTA
1 AGCATACGGAGTTCATTCCCAATCTA
1626544 AG
1 AG
1626546 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AGCATACGGAGTTCATTCCCAATCTA
Found at i:1629056 original size:26 final size:26
Alignment explanation
Indices: 1629019--1629071 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1629009 GTTGACTTAG
*
1629019 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1629045 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
1629071 G
1 G
1629072 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:1631109 original size:26 final size:26
Alignment explanation
Indices: 1631077--1631129 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1631067 GTTGACTTAG
* * *
1631077 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
1631103 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
1631129 G
1 G
1631130 ATTGAACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:1634676 original size:159 final size:159
Alignment explanation
Indices: 1634382--1634756 Score: 475
Period size: 159 Copynumber: 2.4 Consensus size: 159
1634372 TGCCCGCCCA
* * * * *
1634382 CCCGCACGCTCGTTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCCTAGTGTAAGATCGAGCC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGCC
* ** * * * * ** *
1634447 AGATTGAGGGTTGTGGCAGCAGGATCGGTAGCACGCTGAGCGGGACCCGGTCGATCCTTGGCTTG
66 AGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACACTAAGCGGGACCCGATCGATCCCCGGCATG
* * *
1634512 GGCATCCTGCCCCTCTGGCCGGCTGAGCG
131 CGCATCCTACCCCTCTGGCCGGCTGAACG
*
1634541 CCCGCACGCTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-GAC
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAG-C
* *
1634605 CAGACTGAGGGTTGCAGCATCAGGATTGGCAGCACACTAAAG-GGGACCCGATCGATCCCCGGCA
65 CAGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACACT-AAGCGGGACCCGATCGATCCCCGGCA
* *
1634669 TGCGCATCCTACCCCTCTGGTCGGTTGAACG
129 TGCGCATCCTACCCCTCTGGCCGGCTGAACG
** * *
1634700 CCCATACACTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1634757 CATACAGAGT
Statistics
Matches: 187, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
158 1 0.01
159 184 0.98
160 2 0.01
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (159 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAGCC
AGACTGAGGGTTGCAGCAGCAGGATCGGCAGCACACTAAGCGGGACCCGATCGATCCCCGGCATG
CGCATCCTACCCCTCTGGCCGGCTGAACG
Done.