Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 16 of 93
Found at i:1634760 original size:26 final size:26
Alignment explanation
Indices: 1634730--1634782 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1634720 GTTGACTTAG
*
1634730 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1634756 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1634782 G
1 G
1634783 ATTGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1637448 original size:876 final size:883
Alignment explanation
Indices: 1636499--1641712 Score: 6077
Period size: 876 Copynumber: 5.9 Consensus size: 883
1636489 GTTGACTTAG
* * *
1636499 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACT-AGACCGAGGGTTGCAGGTGCAAATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAGACCGAGGGTTGCGGGTGCACATGCTGG
* * * *
1636563 GCACGGGCATGTGCTAGTGTCATATTTTTTTTCACCCGGGGCACCATCGTCGGAGAACCTGACCG
66 GCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCCGGGGCACCATCGTCGGAGAACCTGACCG
* * *
1636628 ACGGCATTGGGGTTCCGACGATT-GGGGGGTC-GGGGGCTGTGTGCACATGATGTGCAG-TGGGT
131 ACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAGATGGGT
*
1636690 GCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTT
196 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
1636754 AAACAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
261 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
1636819 TTTTTTCAAATGGTCAAAAAATCCTGTGCAC-TTT-GC-G-TTTTTTATGCATGCCAACAAAAAT
326 TTTTTTCAAATGGTCACAAAATCCTGTACACTTTTAGCTGATTTTTTGTGCATGCCAACAAAAAT
* * * * *
1636880 ACAAGGGTCACGTCTACCAAGTTTGGGGCAAAAACGCCATCT-AAAAAATGTTTAAAAAAATCCT
391 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAAT-TTTAAAAAAATCCC
* *
1636944 GAATCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
455 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* *
1637009 ATTAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
520 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
* * * * *
1637074 TATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGATTGTGCATCCTGCCTCCCT
585 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCCGCCTCTCT
* *
1637139 GGCCGGCGTAGTGTCCGCCCACCCGCCTGCTTGTTTCGACGGTTGGCTTAGGCATACGGAGTTCA
650 GGCCGACGTAGTGTCCGCCCGCCCGCCTGCTTGTTTCGACGGTTGGCTTAGGCATACGGAGTTCA
** ** * * * * *
1637204 TTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGTAGTAGGATCGGTAGCACG-TAGATGGG
715 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCT-GAGGGG
* * ** * * * *
1637268 TACCCGACCGATTCTTGGCTTGTGCATCCTGCCCCTCTGGCCGACTGAGCGCTCGCACGCTCCTT
779 GACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
1637333 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCAAA
844 TCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTC-AA
*
1637375 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGA-ACCGAGGGTTGTGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAGACCGAGGGTTGCGGGTGCACATGCTGG
* * *
1637439 GATCGGGCATGTGCTGGTGCCACAATTTTTTTTCGCCTGGGGCACCATCGGTGGAGCATCGCTGG
66 GCTCGGGCATGTGCTGGTGCCA-TATTTTTTTTCGCCCGGGGCACCATC------G--T--C-GG
* * * * *
1637504 GGAACCTGACCGATGGCATTGGGGTTCCGTCGATTGGGGGGGCC-GGGGGGTATGCGCACGTGAT
119 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* *
1637568 GTGC-GATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAAC
184 GTGCAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
1637632 TCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTG
249 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
1637697 AAATGGGGACACTTTTTTCAAATGGTGACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTT
314 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA---C----TTTTAGCTG-A-TTT
* * * *
1637762 TTTGTGCATGCCCATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCTGA
370 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGA
* * * * * *
1637827 AAAAA-GTTAAAAAAATCCCGAACCGTAAAAAGGTTCGAATATCATGAAAAATAGAAAATGAGTC
435 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
1637891 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAGAA
500 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
1637956 TGGCATTGGCAAGGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACGG
565 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * * ** *
1638021 CTTGCGCATCATGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CTCACTCATTTCGTCGGTT
630 CTTGAGCATCCCGCCTCTCTGGCCGACGTAGTGTCCGCCCGCCCGCCT-GCTTGTTTCGACGGTT
* * * * **
1638085 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATCGGACTGAGGGTTGCGATAGCAGG
694 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGG
* * * ** * *
1638150 ATTGGTAGCACGCTGAGGGGGACTCGGTCGATCCCCGACTTGCGTATCCTGCCCCTCTGGCCGGC
759 ATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
* *
1638215 TGAGCGCCCGTACGCTCGTTTCGTGGGTCGACTTAGGCATAC----T--TT----GT---
824 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCAA
* * *
1638262 ---T-C--A---C--TCCCAGCCTAAGATCGGAC-CAGACCGAGGGTTGCGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAGACCGAGGGTTGCGGGTGCACATGCTGG
* **
1638315 GCTCGGGCATATGCTGGTGCCGCA-TTTTTTTCGCCCGGGGCACCATCGTCAGAGCATTGTCGAA
66 GCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCCGGGGCACCATCGT-----C---G--G-A
* * * *
1638379 GAACCTGACCGGCGGCATTGGGGTTCCGATGATTGGGGGGGCTGGGGGAGGTGTACGCACATGAT
120 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGG-GGTGTGCGCACATGAT
* * * *
1638444 GTG-TGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAAGCTCAAGAAC
184 GTGCAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
1638508 TCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTG
249 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
1638573 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTT
314 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC-------TTTTAGCTG-A-TTT
*
1638638 TTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGA
370 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGA
* *
1638703 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTC
435 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
1638768 GTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAA
500 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1638833 TGGCATTGGCATGGCAGAAATATGAAGATGTGCC-AATACCCACTTACCACCCAAGCGATCCACG
565 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAA-ACCCACCTACCACCCTATCGATCCACG
* ** * * * * * * *
1638897 GCTTGGGCATCCCGCCTCTCTGGTTGGCATGGTGCCCGCCCACCTGCCTGCTTGTGTT-GTCGGT
629 GCTTGAGCATCCCGCCTCTCTGGCCGACGTAGTGTCCGCCCGCCCGCCTGCTTGT-TTCGACGGT
* * ** * *
1638961 TGGGTTAGGTATACGGAGTTCATTCCCAGTCTAAGATGGGACCGGACTGAGGGTTATGGCAGCAG
693 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAG
* * * * *
1639026 TATCGGCAGCACGCTAAGGGGGACCCGACCGATCCTCGAG-TTGCGCATCCTGCCCTTCTGGCCA
758 GATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCG-GCTTGCGCATCCTGCCCCTCTGGCCG
1639090 GCTGAGCGCCCGCACGCTCGTTTCGT--G--G-C-T-----TA--A---C-TT---AG----
822 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCAA
* * *
1639128 GCATA-GGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTACGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAGACCGAGGGTTGCGGGTGCACATGCTGG
* * *
1639191 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACTCGGGGCTCCATCGCCGGAGCATCGTCGGA
66 GCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCCGGGG---CA----C----CATCGTCGGA
* * *
1639256 GAACCTGACCGGCGGCATTGGGGTTTCGATGATTGGGGGGGCCGGGAGGGGGGTGTGCGCACATG
120 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCC--G-GGGGGGTGTGCGCACATG
* * * *
1639321 ATGTGCA-ATGGGTGCTGGTACTTGGCCCTTATATTAGCCTCTTATCCCTCATCGAACCTCGAGA
182 ATGTGCAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* ** *
1639385 ACTCACACCCCCTTAAAGAG-AGTTTGAGATTTTACAAGTTTGCTGCCAGTAGCTGTTAAAGAGT
247 ACTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
1639449 CTGAAATGGGGACATTTTTTTCAAATGGTCAGAAAATCCTGCACACTTTGAGTTTTTAGCTGAAT
311 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC-------TTTTAGCTG-A-
* * **
1639514 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCGAAACTACTTC
367 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTC
* * *
1639579 TGAAAAAATTTTAAGAAAATCTCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAATGA
432 TGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
* * *
1639643 GTCGTCTTGCCATGAAACTTGACAAGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAA
497 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * * *
1639708 AAATGGCATTAGCATGGTAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATTGATCCA
562 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * *
1639773 CGGCTTGCGCTTCCCGCCTCTCTGGCCGACGTA--GT--GCCCGCCCG-CT-C--GTTTCGACGA
627 CGGCTTGAGCATCCCGCCTCTCTGGCCGACGTAGTGTCCGCCCGCCCGCCTGCTTGTTTCGACGG
*** * *
1639830 TTGGCTTAGGCATACGGAGTTCATTATAAGTCTAAGATCAGACCAGATTGAGGGTTATGGCAGCA
692 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCA
* * *
1639895 GGATTGGCAGCACACTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
757 GGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* *
1639960 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATATGGAGTTCATTCCCAGTCTAA
822 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-CGAGTTCATTCCCAGTC-AA
* ** **
1640024 GCATACGGAGTTCATTCCCAGTCTAACATC-GAACTG-GAGTGAGGGTTATGGGTGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACTGAGACCGAGGGTTGCGGGTGCACATGCTG
* * *
1640087 GGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTTGCCCGAGGCACCATCGTCGGAGCATCGTCGG
65 GGCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCCG-GG-------G-C--ACCATCGTCGG
* * ** ** * *
1640152 AGAACTTGACCGGCGGCATTGGGGTTTTGGTGATTGGGGTGGCCGGGGGGGTGTGCACACATGAT
119 AGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGAT
*
1640217 CTGCA-ATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAAC
184 GTGCAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * **
1640280 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCTGTAGCCATTAAAGTGTCCA
249 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
1640345 AAATGGGGACATTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTCTAGCTAAATTTT
314 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC------TTT-TAGCT-GA-TTT
* * *
1640410 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTTTGA
370 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGA
* * *
1640475 AAAAATTTTAAAAAAATCCCGAACCGTAAAAA-TTTTAAAAATCGTAAAAAATAGAAAATGAGTC
435 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
1640539 GTCTTGCCATGAAACTTCAAATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAA
500 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1640604 TGGCATTGGTATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGG
565 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
1640669 CTTGAGCATCCCGCCTCTTTGGTCGGA-TTAGTGCTTGCCCGCCCGCCCGCCCGCTCT-TTTCGT
630 CTTGAGCATCCCGCCTCTCTGG-CCGACGTAGTG--T--CCGCCCGCCCGCCTGCT-TGTTTCGA
* * *
1640732 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-GACCCAGATTGAGGGTTGTGGC
689 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACTGAGGGTTGTGGC
* ** * *
1640796 AGCAGGATCGACAGCACGCTGAGGCAGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTG
753 AGCAGGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTG
* ** * *
1640861 GCCGGCTGAGCACCCATACGCTCATTTCGTGGGTTGACTTAGGGATACGAAGTTCATTCCCAGTC
818 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTC
1640926 TAA
882 -AA
* * *
1640929 GCATACGGAGTTCATTCCTAGTCTAAGATCAGAC-CAGACCGTGGGTTGCGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAGACCGAGGGTTGCGGGTGCACATGCTGG
* * * *
1640993 GCTCGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCGCTGAA
66 GCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCCGGGGCACCATCGTCGGAG-AAC-CT---
*
1641058 GAACCTGACCAGCGACATTGGGGTTCCGACGATTAGGGGGGCCGGGGGGGTGTGCGCACATGATG
126 G-ACC-GA-C-G-G-CATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
1641123 TG-TGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCCTATCCCTCATCAAACCTCGAGAAC
185 TGCAGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1641187 TCAC-CACCCCTTAAAGTGCATTTGAGTTTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
249 TCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
** *
1641251 GAAATGGGGACACTTTTTTCAAATGGTCACCGAATCCTGTACACTTCGAGTTTTTAGCTAAACTT
313 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA---C----TTTTAGCT-GA-TT
* * * ** *
1641316 TTTTGTGCATGCCCACAAAAATACAAGGACCATGTCTAAAAAGTTTGGGGCCACAACCCCTTCTG
369 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTG
* *
1641381 AAAAAA-TTTAAAAAAATCCCGAACCGTAAAAAGATTCCAAAATCGTGAAAAATAGAAAACGAGT
434 AAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
1641445 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
499 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
1641510 ATGGCATTGGCATGGCAAAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACG
564 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
1641575 GCTTGAGCATCCCACCTCTCTGGCCGACGTAGTG-CTCGCCCGCCCGCCAGCTCGTTTC-ATCGA
629 GCTTGAGCATCCCGCCTCTCTGGCCGACGTAGTGTC-CGCCCGCCCGCCTGCTTGTTTCGA-CGG
*
1641638 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCA
692 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCA
*
1641703 GGATTGGCAG
757 GGATCGGCAG
1641713 TATACTGAGA
Statistics
Matches: 3759, Mismatches: 407, Indels: 317
0.84 0.09 0.07
Matches are distributed among these distances:
866 5 0.00
867 1 0.00
868 1 0.00
869 6 0.00
870 142 0.04
871 4 0.00
872 3 0.00
873 5 0.00
874 69 0.02
875 8 0.00
876 464 0.12
877 427 0.11
878 172 0.05
879 288 0.08
880 7 0.00
881 3 0.00
883 3 0.00
884 3 0.00
885 1 0.00
887 2 0.00
888 43 0.01
889 87 0.02
890 94 0.03
891 4 0.00
892 8 0.00
893 387 0.10
894 68 0.02
895 6 0.00
896 8 0.00
897 135 0.04
898 5 0.00
899 3 0.00
900 4 0.00
901 12 0.00
902 373 0.10
903 149 0.04
904 14 0.00
905 339 0.09
906 32 0.01
907 370 0.10
908 3 0.00
910 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAGACCGAGGGTTGCGGGTGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCATATTTTTTTTCGCCCGGGGCACCATCGTCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAGATGGGT
GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCCTGTACACTTTTAGCTGATTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTTAAAAAAATCCCG
AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCCGCCTCTCTG
GCCGACGTAGTGTCCGCCCGCCCGCCTGCTTGTTTCGACGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGGCAGCACGCTGAGGGGGA
CCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
GTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCAA
Found at i:1639116 original size:877 final size:877
Alignment explanation
Indices: 1634756--1641712 Score: 8614
Period size: 877 Copynumber: 7.9 Consensus size: 877
1634746 CCCAGTCTAA
* * *** * *
1634756 GCATACAGAGTTCATTCCCAGTCTAAGATTGGATTGGACCGTGGGTTGCGGGTGCACATGCAGGG
1 GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* *** * * * *
1634821 CTTGGGCATGTGCTGGTGTTGCATTTTTTTTTGCTCGGGGCACCATCGCCGGAGCATCGTTGGAA
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCG-TCGAA
*
1634886 -AACCTGACCGACGGCATTGGGGTTCCG-TGCGATT------G--GGGGGGTTGTGCGCACATGA
130 GAACCTGACCGACGGCATTGGGGTTCCGAT--GATTGGGGGGGCCGGGGGGGTGTGCGCACATGA
* * *
1634941 TGTGTGATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAAC
193 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
1635006 TCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGT-TC
258 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-
* * * * * *
1635070 GAAATGGGAAAATTTTTTTCAAATGGCCACAAAATCCTCTACACTTCGAGTTTTTAGCTGAATTG
322 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
1635135 TTTTGTGCATGCCCATAAAAATA-ACAGGATCATGTCTACCAAGTTTGGGACCAAAACTCCTTCT
387 TTTTGTGCATGCCAACAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCT
* * * *
1635199 GAAAAAA-TTTAAAAAAATCTTGAACCGTAAAAACTTTCAAAAATTGTGAAAAATAGAAAACGGG
451 GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
**
1635263 TCGTCTTGCCATGAAACTTCACATGAATCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
516 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
1635328 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCGCCTACCACTCTATCGATCCAC
581 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
1635393 GGCTTGCGCATCCTGCCTCTTTGGCCGACGTTGTGCCCACCCGCCTGCCCGCTTGTTTCATCGGT
646 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTTGTTTCGTCGGT
* * *
1635458 CGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCATACTGAGGGTTGCGGTAGCAG
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAG
* * * * * *
1635523 GATCGACAGCACGCTAAGGGGGACCTGGTCGATCCCCGGCTTGCACAT-CTACCCCTCTGGCCGG
776 GATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
*
1635587 TTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * *
1635624 ACATACAGAGTTCATTTCCAGTCTAAGATCGGACCAGACTGACGGTTGCGGGTGCATATACTGGG
1 GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
1635689 CTCGGGCATGTGCTGGTGTCATA-TTTTTTTC-CCCTGGGGCATCATCGTCGGAGCATCGTCGAA
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCC-GGGGCACCATCGTCGGAGCATCGTCGAA
** * *
1635752 GAACCTGACCGACGGCATTGGGGTTCCGGCGGTTGGGGGGGCC-GGGGGGTGTGTGCACATGATG
130 GAACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
1635816 TACGTTGGGTGCTGGCACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
1635881 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* **
1635946 ATGGGGACACTTTTTTCAAATAGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATACTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
1636011 TGTGCATGCCAA-AAAAAGTACAAGGAAC-CTGTCTACCAAGTTTGGGGCCAAAA-CCCTTCCTG
390 TGTGCATGCCAACAAAAA-TACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAACCCCTT-CTG
* * **
1636073 AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAAT-GCTAAAAAATAGAAAGTGAG
452 AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACGAG
1636137 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
516 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
1636202 AATGGCATTGGCATGGCGGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
581 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ** * * ** * *
1636267 GGCTTGCGCATCCCGCCTCTCTGGTCGGTGTAGTGCCCGCCCGTCCGCCCGCTCATTTCTTCGAT
646 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTTGTTTCGTCGGT
* * * * *
1636332 TGGCTTAGGCATACGGAGTTAATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAG
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAG
* * * * * *
1636397 GATCGACAGCACGATGAGGGGGACCC-AGTCGATCCCCAGCTTGCACATCCTGCCTCTCTGGACG
776 GATCGGCAGCACGCTGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
* * *
1636461 GCAGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAG
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * *
1636499 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTGCAGGTGCAAATGCTGGG
1 GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
1636564 CACGGGCATGTGCTAGTGTCATATTTTTTTTCACCCGGGGCACCA---TC---G--TCG--G-AG
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGAAG
* * * *
1636618 AACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGTC-GGGGGCTGTGTGCACATGATGT
131 AACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
*
1636681 GC-AGTGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
196 GCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1636745 ACA-CCCCTTAAACAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
1636809 ATGGGGACACTTTTTTCAAATGGTCAAAAAATCCTGTGCA---C-----TTT-GC-G---TTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
1636861 TATGCATGCCAACAAAAATACAAGGGTCACGTCTACCAAGTTTGGGGCAAAAACGCCATCT-AAA
390 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAA
* *
1636925 AAATGTTTAAAAAAATC-CTGAATCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
455 AAAT-TTTAAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
1636989 GTCTTGCCATGAAACTTCACATTAAGGGTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
518 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
1637054 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGG
583 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * *
1637119 ATTGTGCATCCTGCCTCCCTGGCCGGCGTAGTGTCCGCCCACCCGCCTGCTTGTTTCGACGGTTG
648 CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTTGTTTCGTCGGTTG
** ** * *
1637184 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGGGTTGCGGTAGTAGGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
* * * * * ** * *
1637249 TCGGTAGCACG-TAGATGGGTACCCGACCGATTCTTGGCTTGTGCATCCTGCCCCTCTGGCCGAC
778 TCGGCAGCACGCT-GAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
* *
1637313 TGAGCGCTCGCACGCTCCTTTCGTGGGTTGACTTAG
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
1637349 GCATACGGAGTTCATTCCCAGTCAAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGAAC
1 GCATACTGAGTTCATTCCCAGT-----C-TA---AG---A-T--C-G-----GA-C---CAG-AC
* * *
1637414 CGAGGGTTGTGGGTGCACATGCTGGGATCGGGCATGTGCTGGTGCCACAATTTTTTTTCGCCTGG
40 CGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCAC-ATTTTTTTTCGCCCGG
** *
1637479 GGCACCATCGGT-GGAGCATCG-CTGGGGAACCTGACCGATGGCATTGGGGTTCCG-TCGATTGG
104 GGCACCATC-GTCGGAGCATCGTC-GAAGAACCTGACCGACGGCATTGGGGTTCCGAT-GATTGG
* * *
1637541 GGGGGCC-GGGGGGTATGCGCACGTGATGTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCC
166 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
1637605 CCCTATCCCTCGTCAAACCTCGAGAACTCACACCCCCTTAAACAGCATTTGAGATTTTACAGGTT
231 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
1637670 TGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTGACAAAATCCTA
296 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTG
* * *
1637735 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCATAAAAATACAAGGATCATGTCTAC
361 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * *
1637800 CAAGTTTGGGGCCAAAACACCTTCTGAAAAAA-GTTAAAAAAATCCCGAACCGTAAAAAGGTTCG
426 CAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCA
* * *
1637864 AATATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
491 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* *
1637929 ATTGTATGAATTTACAAGCCATAAGAATGGCATTGGCAAGGCAGAAATATGAAGATGTGCCTAAA
556 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
* **
1637994 CCCACCAACCACCCTATCGATCCACGGCTTGCGCATCATGCCTCTCTGGCCGACGTAGTGCCCGC
621 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGC
* **
1638059 CCGCCCG-CTCACTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
686 CCGCCCGCCT-GCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * ** * * * * *
1638123 TATCGGACTGAGGGTTGCGATAGCAGGATTGGTAGCACGCTGAGGGGGACTCGGTCGATCCCCGA
750 GACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGG
* * *
1638188 CTTGCGTATCCTGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTCGACTTAG
815 CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
** * *
1638251 GCATACTTTGTTCACTCCCAGCCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
1638316 CTCGGGCATATGCTGGTGCCGCA-TTTTTTTCGCCCGGGGCACCATCGTCAGAGCATTGTCGAAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGAAG
* * *
1638380 AACCTGACCGGCGGCATTGGGGTTCCGATGATTGGGGGGGCTGGGGGAGGTGTACGCACATGATG
131 AACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGGGGCCGGGGG-GGTGTGCGCACATGATG
* * * *
1638445 TGTGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAAGCTCAAGAACTC
195 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1638510 ACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAA
260 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1638575 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTT
325 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
*
1638640 TGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAA
390 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAA
*
1638705 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTAAAAAATCGTGAAAAATAGAAAACGAGTCGT
455 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
1638770 CTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATG
520 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1638835 GCATTGGCATGGCAGAAATATGAAGATGTGCC-AATACCCACTTACCACCCAAGCGATCCACGGC
585 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAA-ACCCACCTACCACCCTATCGATCCACGGC
* ** * * * * *
1638899 TTGGGCATCCCGCCTCTCTGGTTGGCATGGTGCCCGCCCACCTGCCTGCTTGTGTT-GTCGGTTG
649 TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTTGT-TTCGTCGGTTG
* * ** * ** *
1638963 GGTTAGGTATACGGAGTTCATTCCCAGTCTAAGATGGGACCGGACTGAGGGTTATGGCAGCAGTA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
* * * * *
1639028 TCGGCAGCACGCTAAGGGGGACCCGACCGATCCTCGAG-TTGCGCATCCTGCCCTTCTGGCCAGC
778 TCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCG-GCTTGCGCATCCTGCCCCTCTGGCCGGC
* *
1639092 TGAGCGCCCGCACGCTCGTTTCGTGGCTTAACTTAG
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
1639128 GCATA-GGAGTTCATTCCCAGTCTAAGATCGGACC-GAACCGAGGGTTACGGGTGCACATGCTGG
1 GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTGCGGGTGCACATGCTGG
* * * * *
1639191 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCACTCGGGGCTCCATCGCCGGAGCATCGTCGGA
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGAA
* *
1639256 GAACCTGACCGGCGGCATTGGGGTTTCGATGATTGGGGGGGCCGGGAGGGGGGTGTGCGCACATG
130 GAACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGGGGCC--G-GGGGGGTGTGCGCACATG
* * * * *
1639321 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCTCTTATCCCTCATCGAACCTCGAGAA
192 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* ** *
1639386 CTCACACCCCCTTAAAGAG-AGTTTGAGATTTTACAAGTTTGCTGCCAGTAGCTGTTAAAGAGTC
257 CTCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
1639450 TGAAATGGGGACATTTTTTTCAAATGGTCAGAAAATCCTGCACACTTTGAGTTTTTAGCTGAATT
321 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* * **
1639515 TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCGAAACTACTTCT
386 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCT
* *
1639580 GAAAAAATTTTAAGAAAATCTCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAATGAG
451 GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * *
1639644 TCGTCTTGCCATGAAACTTGACAAGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAA
516 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
1639709 AATGGCATTAGCATGGTAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATTGATCCAC
581 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
1639774 GGCTTGCGCTTCCCGCCTCTCTGGCCGACGTAGT----GCCCGCCCG-CT-C--GTTTCGACGAT
646 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTTGTTTCGTCGGT
*** * **
1639831 TGGCTTAGGCATACGGAGTTCATTATAAGTCTAAGATCAGACCAGATTGAGGGTTATGGCAGCAG
711 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAG
* * **
1639896 GATTGGCAGCACACTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
776 GATCGGCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
*
1639961 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAG
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
1639998 GCATA-TGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCGAACTGGA
1 GCATACT-GAGTTCATTCCCAGTCTAAG-AT-C-G-G---A---CCAG------A-C---C----
** ** * *
1640062 GTGAGGGTTATGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTTGCCCGA
41 --GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGG
* * * ** * *
1640127 GGCACCATCGTCGGAGCATCGTCGGAGAACTTGACCGGCGGCATTGGGGTTTTGGTGATTGGGGT
104 GGCACCATCGTCGGAGCATCGTCGAAGAACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGG
* * *
1640192 GGCCGGGGGGGTGTGCACACATGATCTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCC
169 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
1640256 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
234 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* * ** * * *
1640321 TACCTGTAGCCATTAAAGTGTCCAAAATGGGGACATTTTTTTCGAATGGTCACAAAATCTTGTAC
299 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* * * *
1640386 ACTTTGAGTTTCTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAA
364 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * *
1640451 GTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAA-TTTTAAAA
429 GTTTGGGGCCAAAACCCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAA
* * *
1640515 ATCGTAAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCAAATGAAGGCTTAAGGGACCATT
494 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* * *
1640580 GTATGAATTTACAAGCCAGAAAAATGGCATTGGTATGGTAGAAATATGAAGATGTGCCTAAACCC
559 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
1640645 ACCTACCACCCTATCGATGCACGGCTTGAGCATCCCGCCTCTTTGGTCGGA-TTAGTGCTTGCCC
624 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG-CCGACGTA--G--TGCCC
* * *
1640709 GCCCGCCCGCCCGCTCT-TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT
684 GCCCGCCCGCCTGCT-TGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * * **
1640773 C-GACCCAGATTGAGGGTTGTGGCAGCAGGATCGACAGCACGCTGAGGCAGACCCGATCGATCCC
748 CAGA-CCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGATCCC
* * ** *
1640837 CGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCACCCATACGCTCATTTCGTGGGTTGACTTA
812 CGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
1640902 G
877 G
*
1640903 GGATAC-GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGA
1 GCATACTG-AGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------CAGACC-GA
** * *
1640967 CCGTGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGG
43 ----GGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGG
* * *
1641032 GGCACCATCGTCGGAGCATCG-CTGAAGAACCTGACC-AGCGACATTGGGGTTCCGACGATTAGG
104 GGCACCATCGTCGGAGCATCGTC-GAAGAACCTGACCGA-CGGCATTGGGGTTCCGATGATTGGG
* *
1641095 GGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCC
167 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCC
* * *
1641160 CCCTATCCCTCATCAAACCTCGAGAACTCAC-CACCCCTTAAAGTGCATTTGAGTTTTTATAGGT
231 CCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGT
**
1641224 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACCGAATCCT
295 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCT
* * * * *
1641289 GTACACTTCGAGTTTTTAGCTAAACTTTTTTGTGCATGCCCACAAAAATACAAGGACCATGTCTA
360 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
** * * *
1641354 AAAAGTTTGGGGCCACAACCCCTTCTGAAAAAA-TTTAAAAAAATCCCGAACCGTAAAAAGATTC
425 CCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTC
*
1641418 CAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
490 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGAC
* *
1641483 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGGTGTGCCTAA
555 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAA
* * *
1641548 ACCCACCTACCACCCTATCGATCCACGGCTTGAGCATCCCACCTCTCTGGCCGACGTAGTGCTCG
620 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCG
* * * * *
1641613 CCCGCCCGCCAGCTCGTTTCATCGATTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCA
685 CCCGCCCGCCTGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* *
1641678 GACCAGACTGAGGGTTGTGGCAGCAGGATTGGCAG
750 GACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAG
1641713 TATACTGAGA
Statistics
Matches: 5299, Mismatches: 609, Indels: 327
0.85 0.10 0.05
Matches are distributed among these distances:
849 9 0.00
850 423 0.08
851 11 0.00
853 1 0.00
854 2 0.00
855 4 0.00
856 2 0.00
859 2 0.00
860 1 0.00
862 1 0.00
863 96 0.02
864 89 0.02
865 34 0.01
866 10 0.00
867 55 0.01
868 75 0.01
869 3 0.00
870 157 0.03
871 22 0.00
872 14 0.00
873 252 0.05
874 400 0.08
875 131 0.02
876 437 0.08
877 460 0.09
878 173 0.03
879 288 0.05
880 5 0.00
881 5 0.00
882 1 0.00
883 1 0.00
885 3 0.00
886 1 0.00
887 3 0.00
888 32 0.01
889 88 0.02
890 96 0.02
891 1 0.00
892 3 0.00
893 399 0.08
894 56 0.01
895 2 0.00
896 2 0.00
897 121 0.02
898 3 0.00
899 2 0.00
900 1 0.00
901 13 0.00
902 381 0.07
903 152 0.03
904 12 0.00
905 349 0.07
906 32 0.01
907 376 0.07
909 1 0.00
910 2 0.00
911 1 0.00
916 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (877 bp):
GCATACTGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCGTCGAAG
AACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAA
AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTGCTTGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
GCAGCACGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:1640034 original size:26 final size:26
Alignment explanation
Indices: 1639998--1640049 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
1639988 GTTGACCTAG
*
1639998 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1640024 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1640050 CATCGAACTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1640935 original size:26 final size:26
Alignment explanation
Indices: 1640905--1640955 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1640895 TGACTTAGGG
1640905 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
* *
1640931 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
1640956 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:1641559 original size:907 final size:896
Alignment explanation
Indices: 1639128--1641706 Score: 3723
Period size: 893 Copynumber: 2.9 Consensus size: 896
1639118 CTTAACTTAG
1639128 GCATA-GGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACCG-ACCGAGGGTTACGGGTGCACATGCTGGG
** ** * *
1639192 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCACTCGGGGCTCCATCGCCGGAGCATCGTCGGAG
64 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCGTCGGAG
1639257 AACCTGACCGGCGGCATTGGGGTTTCGATGATTGGGGGGGCCGGGAGGGGGGTGTGCGCACATGA
129 AACCTGACCGGCGGCATTGGGGTTTCGATGATT-GGGGGGCC--G-GGGGGGTGTGCGCACATGA
* * *
1639322 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCTCTTATCCCTCATCGAACCTCGAGAAC
190 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAAC
* ** *
1639387 TCACACCCCCTTAAAGAG-AGTTTGAGATTTTACAAGTTTGCTGCCAGTAGCTGTTAAAGAGTCT
255 TCACACCCCCTTAAAGAGCA-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
1639451 GAAATGGGGACATTTTTTTCAAATGGTCAGAAAATCCTGCACACTTTGAGTTTTTAGCTGAATTT
319 GAAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTAAATTT
* * *
1639516 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCGAAACTACTTCTG
384 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCC-AAACTCCTTCTG
* *
1639581 AAAAAATTTTAAGAAAATCTCGAACCGTAAAAAGTTTCAAAATCGTGAAAAATAGAAAATGAGTC
448 AAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAATCGTGAAAAATAGAAAATGAGTC
* * *
1639646 GTCTTGCCATGAAACTTGACAAGAAGGCTTAAGGGACCATTGTATGATTTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1639711 TGGCATTAGCATGGTAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATTGATCCACGG
578 TGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
1639776 CTTGCGCTTCCCGCCTCTCTGGCCGA-CGTAG-T-----GCCCGCCCGCTCGTTTCGACGATTGG
643 CTTGAGCATCCCGCCTCTCTGGCCGATAGT-GCTCGCCCGCCCGCCCGCTCGTTTCGTCGATTGG
** *
1639834 CTTAGGCATACGGAGTTCATT-ATAAGTCTAAGATCAGACCAGATTGAGGGTTATGGCAGCAGGA
707 CTTAGGCATACGGAGTTCATTCCCAA-TCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGA
* * ** *
1639898 TTGGCAGCACACTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
771 TCGACAGCACACTGAGGCAGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCT
* * * * *
1639963 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACCTAGGCATATGGAGTTCATTCCCAGTCTAA
836 GAGCACCCACACGCTCATTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAA
* * ** *
1640024 GCATACGGAGTTCATTCCCAGTCTAACATCGAACTGGAGTGAGGGTTATGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-AC-CGACCGAGGGTTACGGGTGCACATGCTGGG
* *
1640089 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTTGCCCGAGGCACCATCGTCGGAGCATCGTCGGAG
64 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
1640154 AACTTGACCGGCGGCATTGGGGTTTTGGTGATTGGGGTGGCCGGGGGGGTGTGCACACATGATCT
129 AACCTGACCGGCGGCATTGGGGTTTCGATGATTGGGG-GGCCGGGGGGGTGTGCGCACATGATGT
*
1640219 GCAATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCAATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * **
1640283 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCTGTAGCCATTAAAGTGTCCAAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
1640348 TGGGGACATTTTTTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTCTAGCTAAATTTTTTT
323 TGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTAAATTTTTTT
*
1640413 GTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTTTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCC-AAACTCCTTCTGAAAA
* * *
1640478 AATTTTAAAAAAATCCCGAACCGTAAAAATTTTAAAAATCGTAAAAAATAGAAAATGAGTCGTCT
452 AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAATCGTGAAAAATAGAAAATGAGTCGTCT
* *
1640543 TGCCATGAAACTTCAAATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGC
517 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
1640608 ATTGGTATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCACGGCTTG
582 ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
1640673 AGCATCCCGCCTCTTTGGTCGGATTAGTGCTTGCCCGCCCGCCCGCCCGCTCTTTTCGTC-AGTT
647 AGCATCCCGCCTCTCTGG-CCGA-TAGTGC-T---CGCCCGCCCGCCCGCTCGTTTCGTCGA-TT
1640737 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATC-GACCCAGATTGAGGGTTGTGGCAGCAG
705 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGA-CCAGATTGAGGGTTGTGGCAGCAG
* * *
1640801 GATCGACAGCACGCTGAGGCAGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGG
769 GATCGACAGCACACTGAGGCAGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
* * *
1640866 CTGAGCACCCATACGCTCATTTCGTGGGTTGACTTAGGGATACGAAGTTCATTCCCAGTCTAA
834 CTGAGCACCCACACGCTCATTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
1640929 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGTGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GACC-GACCGAGGGTTACGGGTGCACATGCTGGG
*
1640994 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCG-CTGAA
64 CTCGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCGTC-GGA
* * * *
1641058 GAACCTGACCAGCGACATTGGGGTTCCGACGATTAGGGGGGCCGGGGGGGTGTGCGCACATGATG
128 GAACCTGACCGGCGGCATTGGGGTTTCGATGATT-GGGGGGCCGGGGGGGTGTGCGCACATGATG
**
1641123 TGTGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCCTATCCCTCATCAAACCTCGAGAACT
192 TGCAATGGGTGCTGGTACTTGGCCCTTATATTAG-CCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
1641188 CAC-CACCCCTTAAAGTGCATTTGAGTTTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 CACAC-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* ** * *
1641252 AAATGGGGACACTTTTTTCAAATGGTCACCGAATCCTGTACACTTCGAGTTTTTAGCTAAACTTT
320 AAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTAAATTTT
* * * * *
1641317 TTTGTGCATGCCCACAAAAATACAAGGACCATGTCTAAAAAGTTTGGGGCCACAACCCCTTCTGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCA-AACTCCTTCTGA
* *
1641382 AAAAA-TTTAAAAAAATCCCGAACCGTAAAAAGATTCCAAAATCGTGAAAAATAGAAAACGAGTC
449 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAAAATGAGTC
1641446 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1641511 TGGCATTGGCATGGCAAAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
578 TGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
1641576 CTTGAGCATCCCACCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCAGCTCGTTTCATCGATTG
643 CTTGAGCATCCCGCCTCTCTGGCCGA--TAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGATTG
* * *
1641641 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGA
706 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGA
1641706 T
771 T
1641707 TGGCAGTATA
Statistics
Matches: 1502, Mismatches: 148, Indels: 59
0.88 0.09 0.03
Matches are distributed among these distances:
893 398 0.26
894 55 0.04
895 2 0.00
896 12 0.01
897 142 0.09
898 1 0.00
903 85 0.06
904 7 0.00
905 381 0.25
906 40 0.03
907 379 0.25
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGACCGACCGAGGGTTACGGGTGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
CCTGACCGGCGGCATTGGGGTTTCGATGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCA
ATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTAAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGCCAAACTCCTTCTGAAAAAATT
TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCC
ATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGAGCA
TCCCGCCTCTCTGGCCGATAGTGCTCGCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCAT
ACGGAGTTCATTCCCAATCTAAGATCAGACCAGATTGAGGGTTGTGGCAGCAGGATCGACAGCAC
ACTGAGGCAGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCAC
ACGCTCATTTCGTGGGTTGACCTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:1641979 original size:295 final size:295
Alignment explanation
Indices: 1641448--1642007 Score: 899
Period size: 295 Copynumber: 1.9 Consensus size: 295
1641438 AACGAGTCGT
1641448 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1641513 GCATTGGCATGGCAAAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
66 GCATTGGCATGGCAAAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
1641578 TGAGCATCCCACCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCCAGCTCGTTTCATCGATTGGC
131 TGAGCATCCCACCTCTCTGGCCGAAGCAGTGCCCACCCGCCCGCCAGCTCGTTTCATCGATTGGC
**
1641643 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTGTGGCAGCAGGAT
196 TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCAGCAGCAGGAT
*
1641707 TGGCAGTATACTGAGAGGGACCTGGCCGATCATCGG
260 CGGCAGTATACTGAGAGGGACCTGGCCGATCATCGG
*
1641743 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATG
1 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
1641808 GTATTGGCATGGTAGAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
66 GCATTGGCATGGCAAAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
1641873 TGCGCATCCCACTTCTCTGGTCGAAGCAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
131 TGAGCATCCCACCTCTCTGGCCGAAGCAGTGCCCACCCGCCCGCCAGCTCGTTTCATCGATTGGC
**
1641938 TTAGGCATAC-AGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCAGCAGCAGGAT
196 TTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGAT
1642002 CGGCAG
260 CGGCAG
1642008 CACGCTGAGG
Statistics
Matches: 242, Mismatches: 21, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
294 1 0.00
295 240 0.99
296 1 0.00
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (295 bp):
CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGGCAAAAATATCAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGAGCATCCCACCTCTCTGGCCGAAGCAGTGCCCACCCGCCCGCCAGCTCGTTTCATCGATTGGC
TTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGCAGCAGGATC
GGCAGTATACTGAGAGGGACCTGGCCGATCATCGG
Found at i:1642137 original size:26 final size:26
Alignment explanation
Indices: 1642101--1642153 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1642091 GTTAACTTAG
1642101 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1642127 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1642153 G
1 G
1642154 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1643146 original size:26 final size:26
Alignment explanation
Indices: 1643116--1643168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1643106 GTTGACTTAG
*
1643116 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1643142 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1643168 G
1 G
1643169 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1643387 original size:4 final size:4
Alignment explanation
Indices: 1643378--1643403 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
1643368 TCGGCTTAAT
1643378 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
1643404 TCGTTTCGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:1646153 original size:26 final size:26
Alignment explanation
Indices: 1646113--1646163 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
1646103 TGACTTAGGC
* *
1646113 ATACGGAGTTAATTCCCAGTCTAAGG
1 ATACAGAGTTAATTCCCAGTATAAGG
* *
1646139 ATACAGAGTTCATTCTCAGTATAAG
1 ATACAGAGTTAATTCCCAGTATAAG
1646164 ATCAGACCGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTAATTCCCAGTATAAGG
Found at i:1648729 original size:26 final size:26
Alignment explanation
Indices: 1648698--1648750 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1648688 GTTGACTTAG
1648698 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1648724 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1648750 G
1 G
1648751 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1649203 original size:27 final size:27
Alignment explanation
Indices: 1649145--1649203 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
1649135 CTCCTTTTGA
* * **
1649145 AAAAATTTTTAAAAAATCCTGAACCAT
1 AAAAAGTTTTAAAAAATCATGAAAAAT
1649172 AAAAAGTTTT-AAAAATCATGAAAAAT
1 AAAAAGTTTTAAAAAATCATGAAAAAT
1649198 AGAAAA
1 A-AAAA
1649204 CGAGTCGTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.59, C:0.08, G:0.07, T:0.25
Consensus pattern (27 bp):
AAAAAGTTTTAAAAAATCATGAAAAAT
Found at i:1650509 original size:860 final size:860
Alignment explanation
Indices: 1644290--1651063 Score: 6735
Period size: 859 Copynumber: 7.8 Consensus size: 860
1644280 TTTCGTCGAT
* * * * ** *
1644290 AGCACGCAGAGGGGGACCCAGCCGATCCCCGGCTTACGCATCCTGCCCCTCTGGATGACTGAGCG
1 AGCACGCTGAGGGGGACCCAGCCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCG
* * *
1644355 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATTCCCAGTCTAAGAT-GAGAT
66 CCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-GAC
* * * * * * * * *
1644418 CGGACTGAGGGTTGCGGGTGCACATGCTAGGCTCGGGCATGTGCAGGTGTCGCATTTTTTTTTGC
130 CAGACCGAGGGTTG-AGGTGCACATACTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTTGC
* ** *
1644483 CCGGGGCACCATCG---C-CAAAGAACCTGACC-A-GCGACATTGGGGTTCCGGCGATTGGGGGG
194 CCGGGGCATCATCGCATCTCGGAGAACCTGACCGATG-G-CATTGGGGTTCCGACGATTGGGGGG
* *
1644542 -CG-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
257 CCGAGGGGGTGT-CGCACATGA-GT-CGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
1644605 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
318 TCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
1644670 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACAC
383 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* *
1644735 TTTGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGT
448 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
1644799 TTGGGG-CAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAATCATAAAAAGTTTGAAAAAT
513 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
* *
1644863 TATGAAAAATAGAAAACGAGTCGTCTTG-CATTGAAACGTCACATGAAGGCTTAAGGGACCATTG
578 CATGAAAAATAGAAAACGAGTCGTCTTGCCA-TGAAACTTCACATGAAGGCTTAAGGGACCATTG
* * *
1644927 TATGAATTT---A--C-----AATGGCATTGGCATGGCAAAAATATGAAGATGTCCCTAAACCAA
642 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
** * * * * * * * * * * *
1644982 CCTACCACCCTATCGATTAATGCCTTGCACATCTCGCCTCTTTGGCCGACGTAGTGCCCGCCTGC
707 CCTACCACCCTATCGATCCACGGCTTACGCATCCCACCTCTCTAGCCGGCGTATTGCCCGCCCGC
* ** * *
1645047 CCATCCGCTCGTTTTGA-CGGTTGGATTAGGCATTC-AGAGTTCATTCCCAGTCTAAGATCGGAC
772 CCA----CTCG-TTTCATCGGTTGCCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGAC
** * * *** * * *
1645110 TGGGCTGAGGGATGTGGTAGT-AGGATCGGT
831 CAGACTGAGGGTTACAGCA-TAAGGATCAGC
* * *
1645140 GGCACG-TAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
1 AGCACGCT-GAGGGGGACCCAG-CCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAG
* * ** * * * * ** *
1645203 CGCACGCACTTTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCTTAGTCTAAGATCAGA
64 CGCCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * * * * * *
1645268 CCGGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGCGCAGGTGACGCATTTTTTTTCG
129 CCAGACCGAGGGTTG-AGGTGCACATACTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTTG
* * * *
1645333 CCCGGGCCACCATCGCTGGAGCATCGTCGGAGAACCTGACC-AGCGGCATTGGGGTTCCGGCGAT
193 CCCGGGGCATCAT--C----GCATC-TCGGAGAACCTGACCGA-TGGCATTGGGGTTCCGACGAT
1645397 TGGGGGGCCG-GAGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTG
250 TGGGGGGCCGAG-GGGGTGT-CGCACATGA-GT-CGA-TGGTGCTGGTACTTGGCCCTTATATTG
* * * * * *
1645461 ACCCCCTATCCCTCATCAAACCTCAAGAAGTCACACCCCCTTAAAAAGCATTTGAGATTTTACAA
310 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAG
* *
1645526 GTTTGCTGCCAGTAGCCATTAAAGTCTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
375 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
1645591 CTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTA
440 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
1645656 TACCAAGTTTGGGGCCAAAACTCCTTTTGAAACAATTTTAAAAAAATCCTGAACCGTAAAAAGTT
505 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTT
* * **
1645721 TTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAATTTAGGCTTAAGGG
570 TTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
** * * *
1645786 ACCATTGTATGAATTTACAAGCCATAAAAATTTCATTCGCAAGGCAAAAATATGAAGATGTGCCT
635 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
* ** * *
1645851 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
700 AAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCACCTCTCTAGCCGGCGTATTG--
** ** * * * * *
1645916 CTCCCGCCCGCCTGCTCGTTTTGTCGGCTGGCTTAGGCATACGGATTTCATTCCTAGTCTAAGAT
763 --CCCGCCCGCCCACTCGTTTCATCGGTTGCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
* ** ** * *
1645981 CAGATC-GGGTGGAGCTTTTCGGCA-ACAGGATC-GAC
826 CAGACCAGACT-GAGGGTTACAGCATA-AGGATCAG-C
* * * * * *
1646016 ATCCCACTGAAGGGGACCC-GACCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCTGGCTGAGC
1 AGCACGCTGAGGGGGACCCAG-CCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGC
* * * * *
1646080 ACCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGGATACAG
65 GCCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GAT-C-G
* *
1646145 AGTTCATTCTCAGTATAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAGCA
127 -G---A----C----------C--A---GACCGAGGGTTG-AGGTGCACATACTGGGCTCGAGCA
* * * * *
1646210 TGTGCCGGTG--TC-GTATTTTTT----------T--TCG--T-TCGG-G--CC---CCCAT--C
168 TGTGCTGGTGCCACATTTTTTTTTGCCCGGGGCATCATCGCATCTCGGAGAACCTGACCGATGGC
* * * *
1646249 A-------T-CAAAGATTGGGGGG-CG-GCGGGTGTGCGTACATGATGTGCGATGGGTGCTGGTA
233 ATTGGGGTTCCGACGATTGGGGGGCCGAGGGGGTGT-CGCACATGA-GT-CGAT-GGTGCTGGTA
* * *
1646304 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTCGAGAATTCACACCCCCTTAAAGAGC
294 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGC
*
1646369 ATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
359 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * * *
1646434 AAATTGTCACAAAATCCTATACAATTCGAGTCTTGT-GCTGAATTTTTTTGTGCATGCCAATAAA
424 AAATGGTCACAAAATCCTGTACACTTCGAGT-TTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
1646498 AATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
488 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* * **
1646563 TCGAACCATAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
553 CCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
** **
1646628 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTTCATTGGCATGATAGA
618 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* * * *
1646693 AATATGAAGATGTGCCTAAACCCGCCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCT
683 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCACCTCT
* * * * * * * *
1646758 TTGGCTGGCGTAGTGCCCGCCCGCCCTCTCGTTTCGTCAGTT-CGCTTAGGCATACAAAGTTCAT
748 CTAGCCGGCGTATTGCCCGCCCGCCCACTCGTTTCATCGGTTGC-CTTAGGCATACGAAGTTCAT
* * ** * * * ** *
1646822 TCCCAATCTAAGATCAAACTGGGCTGAAGGTTGC-GACA-ACAGGATTGGT
812 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTACAG-CATA-AGGATCAGC
* *
1646871 AGCACGCTGAAGGGGACCC-GACCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
1 AGCACGCTGAGGGGGACCCAG-CCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGC
* * ** * *
1646935 GCCCGCACGCTCATTTTATCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCCAAGGATACAG
65 GCCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA-GAT-C-G
** ** * * * * ** * * * * *
1647000 AGTGCATTCCTA--GTCTAAGATCGGACCGGACGGAGGGTTGCGGGTGCACAG-GCTAGGCT-CG
127 -GACCAGACCGAGGGT-TGAGGT-GCA-CATAC--TGGGCT-C--GAGCA-TGTGCT-GG-TGCC
* * ** * * ** *
1647061 AGCATGTGTTGGTG-CC---GCAT-TTTGTTTCGCTCGG-G--CC---CC-----CA-T--CG-T
180 A-CATTTTTTTTTGCCCGGGGCATCATCGCAT--CTCGGAGAACCTGACCGATGGCATTGGGGTT
*
1647106 CGGA-GATTGGGGGG-CGA-GGGGTGTGCGCACATGATGTGCGATGGCTGCTGGTACTTGGCCCT
242 CCGACGATTGGGGGGCCGAGGGGGTGT-CGCACATGA-GT-CGATGG-TGCTGGTACTTGGCCCT
* * * *
1647168 TATATTGGCCCCTTATCCCTCATCAAACTTCGAGAACTCACACCCCTTTAAAGGGCATTTGAGGT
303 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGAT
* *
1647233 TTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCA
368 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * * * *
1647298 CAAAATCCTGTACACTTCAATTTTTTTGTTGAATTTTTTTATGCATGCCAACAAAAATACAAGCA
433 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
1647363 TCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAGTTTTTAAAAAATCTCGAACCATA
498 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTA
* * *
1647428 AAAAGTTTTGAAAATCATGAAAAATAGAAAACGGGTGGTCTTGCCATGAAACTTCACATGAAAGG
563 AAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG-AAGG
* *
1647493 -TTAAGGGACCGTTGTATGAATTTACAAGCCATTAAAATGGCATTGGCATGGCAGAAATATGAAG
627 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
* * * * *
1647557 ATGTGCCTAAACCCGCC-AGCACCCTATCGATCGATGGCTTGCGCATCCCACCTCTCTAGCCGGC
692 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCACCTCTCTAGCCGGC
* ** * *
1647621 GTAGTGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTA
757 GTATTGCCCGCCCGCCCACTCGTTTCATCGGTTGCCTTAGGCATACGAAGTTCATTCCCAGTCTA
* ** ** *
1647686 AGATCAAACCAGACTGAGGGTTGTAGCAGCAGGATCAGT
822 AGATCAGACCAGACTGAGGGTTACAGCATAAGGATCAGC
* * * * * * *
1647725 AGCACGCTGAGGGGGACCCGGCCTATCCCCAGCTTGTGCATCCTGCCCCACTGGCCGGTTGAGCA
1 AGCACGCTGAGGGGGACCCAGCCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCG
* * * * * **
1647790 CCCGCATGCTCTTTTCCTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGGGATG
66 CCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * ** * * *
1647855 A-ACCAAGGGTGGCGGGTGCACATTTTGGGCTCGAGCATGTGCTGGTGCCGCATTGTTTTTCGCC
131 AGACCGAGGGTTG-AGGTGCACATACTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTTGCC
* * *
1647919 TGGGGCACCATCG---CT-GGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGCCG
195 CGGGGCATCATCGCATCTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATTGGGGGGCC-
* * *
1647980 GCGGGGGTGTGCGCACATGATGTCCAATAGGTGCTGGTACTTGGCCCGTATATTGGCCCCCTATC
259 GAGGGGGTGT-CGCACATGA-GT-CGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
1648045 CCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCT
320 CCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
1648110 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCCTATACACTT
385 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
* * * *
1648175 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAAAAAAAAAAAACAAGGATGACGTGTACCAAG
450 CGAGTTTTTAGCTGAATTTTTTTGTGCATG-CC--AACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
1648240 TTTGGGGCCAAAACGCCTTCTGAAAAAA-TCTAAAAAAATCCCAAATCGTAAAAAGTTTCAAAAA
512 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAA
* * *
1648304 TCATGAAAAATAGAAAACGAGTCGTCTTGGCATTAAACTTCACACGAAGGCTTAAGGGACCATTG
577 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
*
1648369 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCA
642 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* *
1648434 CCTACCA-CCTATCGATCCACGGCTTACGCATCCCACCTCTCTAGCCGGTGAAGTGCCCGCCCGC
707 CCTACCACCCTATCGATCCACGGCTTACGCATCCCACCTCTCTAGCCGGCGTA-T----------
* * * * *
1648498 CTGCCCGTCCACCCGCCCGCTCGTTTCGTCGGTT-CGCTTGGGCATATGGAGTTCATTCCCAGTC
761 -TGCCCG----CCCGCCCACTCGTTTCATCGGTTGC-CTTAGGCATACGAAGTTCATTCCCAGTC
* * * * *
1648562 TAAGATCGGACCAGACCGAGTGTTGCAGCATCAGGATC-GAC
820 TAAGATCAGACCAGACTGAGGGTTACAGCATAAGGATCAG-C
* * * * * * *
1648603 AGCACGCAGAGGGTGACCC-GATCGATCCCCAGCTTGCGCATCCTACCCCTCTAGCTGGTTGAGT
1 AGCACGCTGAGGGGGACCCAG-CCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGC
* * *
1648667 GCCCATACGCTCGTTTAGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
65 GCCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGG
* ** * * * * ** * ** * **
1648732 AGTTCATTCCCA--GTCTAAGAT---CAGAC-CAGATCGAGGGT-TGCGGGTG-CACA---TGCT
128 A--CCAGACCGAGGGT-TGAGGTGCACATACTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTT
** * * * * *
1648786 GGGCTC-GGGCATGTGCTGGTGCTGGAGCGTCGCTAGAGAACCTGACTGATGGCATTGGGGTTCC
190 TTGCCCGGGGCA--T-C--AT-C-GCATC-TCG---GAGAACCTGACCGATGGCATTGGGGTTCC
*
1648850 GACGATTGGGGGGGCTGA-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
244 GACGATT-GGGGGGCCGAGGGGGTGT-CGCACATGA-GT-CGAT-GGTGCTGGTACTTGGCCCTT
* * * *
1648914 ATACTGGGCCCCTATCCCTCATCAAACCTTGAGACCTCACACCCCTTTAAAGAGCATTTGAGATT
304 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATT
1648979 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
369 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
1649044 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGAT
434 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * * *
1649109 CACGCCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTTAAAAAATCCTGAACCATAA
499 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAA
* * *
1649174 AAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGACACTACATATGAAGGCT
564 AAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* *
1649239 TAAGGGACCATTGTATGAATTGACAACAAGCCATAAAAATGCCATTGGCATGGCAGAAATATGAA
629 TAAGGGACCATTGTATGAATT---TACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAA
* * * *
1649304 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTACGCATCCCGCCTCTCTGGCCGT
691 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCACCTCTCTAGCCGG
* *
1649369 CGTAGTT-CCCGCCCGCCCGACTGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTACC
756 CGTA-TTGCCCGCCCGCCC-A---CTCGTTTCATCGGTTGCCTTAGGCATACGAAGTTCATTCCC
*
1649433 AGTCTAAGATCAGACCAGACCT-AAGGTTAC-G-ATAGTAGGATCAGC
816 AGTCTAAGATCAGACCAGA-CTGAGGGTTACAGCATA--AGGATCAGC
* * * * * *
1649478 AGCACGCTGAGGGGGACCCAGCCAATCCTC-GACTTGCACATCTTGCCCCTCTGGCCTGCTGAGC
1 AGCACGCTGAGGGGGACCCAGCCGATCCCCAG-CTTGCGCATCCTACCCCTCTGGCCGGCTGAGC
* * * *
1649542 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGAC
65 GCCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
*
1649607 CAGACCGAGGGTTCGAAGTGCACATACTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTTGC
130 CAGACCGAGGGTT-GAGGTGCACATACTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTTGC
**
1649672 CCGGGGCATCATCGCCGGAGCATCATCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTG
194 CCGGGGCATCAT---C---GCATC-TCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATT-
*
1649737 GGGGGGCCG-GGGGGTGT-GCACA-CA-T-GAT-GTGCTGGTACTTGGCCCTTATATTGGCCCCC
251 GGGGGGCCGAGGGGGTGTCGCACATGAGTCGATGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
1649796 TATCCCTCATCAAACCTCAAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGC
316 TATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
1649861 TGCCAGTAGCCATTAAAATGTCTCAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
381 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
*
1649926 ACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAA
446 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * *
1649990 G-TTGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGCTTCAAAA
511 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAA
* * * *
1650054 ATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACCTCATATGAAGGCTTAAGGGACCATT
576 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* *
1650119 GT-TGAATTTACAAGCCATAAAAATGGC-TTCGGCATGGAAAAAATATGAAGATGTGCCTAAACC
641 GTATGAATTTACAAGCCATAAAAATGGCATT-GGCATGGCAGAAATATGAAGATGTGCCTAAACC
* ** * *
1650182 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGGGTATTGCCCGCCC
705 CACCTACCACCCTATCGATCCACGGCTTACGCATCCCACCTCTCTAGCCGGCGTATTGCCCGCCC
* * ** *
1650247 GCCCACTCGTTTCATCGATTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGA
770 GCCCACTCGTTTCATCGGTTGCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGA
*
1650312 CTGAGGGTTACGGCATAAGGATC-GCC
835 CTGAGGGTTACAGCATAAGGATCAG-C
* *
1650338 AGCACG-TAGAGGGGGACCCAGTCGAT-CCCAGGCTTGCGCATCCTACCTCTCTGGCCGGCTGAG
1 AGCACGCT-GAGGGGGACCCAGCCGATCCCCA-GCTTGCGCATCCTACCCCTCTGGCCGGCTGAG
1650401 CGCCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
64 CGCCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * * * **
1650466 CCGGACCGAGGGTTGTGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTTTTTC
129 CCAGACCGAGGGTTG-AGGTGCACATACTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTT-
* *
1650531 GCCCGGGGCACCATCG----TCGGAGAACCTGACCGATGGCATTGGGGTTCCGGCGATTGGGGGG
192 GCCCGGGGCATCATCGCATCTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATTGGGGGG
* **
1650592 -CGAGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGTCCTTATATTCACCCCCT
257 CCGA-GGGGGTGT-CGCACATGA-GT-CGAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
1650656 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
317 ATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
1650721 GCCAGTAGCCATTAAAGTGTTTAAAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACA
382 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * * * * * *
1650786 ATTTGAGTTTTTAGCTTAATTTTTTTGTCCATCCCAACAAAAATAAAAGGATCACATCTACCAAG
447 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
1650851 TTTGGGGCCAAAACTTCTTCTG--AAAATTTAAAAAAAAATCTCGAACTGTAAAAA-TTTTAAAA
512 TTTGGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAAAAATCCCGAACCGTAAAAAGTTTTAAAA
* *
1650913 ATTATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
576 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
*
1650978 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCC
641 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
*
1651043 ACCGACCACCCTATCGATCCA
706 ACCTACCACCCTATCGATCCA
1651064 TGGATTGTGT
Statistics
Matches: 5037, Mismatches: 634, Indels: 496
0.82 0.10 0.08
Matches are distributed among these distances:
831 4 0.00
832 3 0.00
833 5 0.00
835 4 0.00
836 2 0.00
838 7 0.00
839 3 0.00
840 1 0.00
841 2 0.00
842 11 0.00
843 8 0.00
844 9 0.00
846 4 0.00
847 8 0.00
848 2 0.00
849 12 0.00
850 136 0.03
851 97 0.02
852 10 0.00
853 6 0.00
854 238 0.05
855 619 0.12
856 13 0.00
857 14 0.00
858 3 0.00
859 727 0.14
860 560 0.11
861 55 0.01
862 228 0.05
863 62 0.01
864 320 0.06
865 33 0.01
866 116 0.02
867 8 0.00
868 118 0.02
869 29 0.01
870 190 0.04
871 20 0.00
872 9 0.00
873 9 0.00
874 14 0.00
875 179 0.04
876 260 0.05
877 30 0.01
878 193 0.04
879 56 0.01
880 15 0.00
881 7 0.00
882 65 0.01
883 106 0.02
884 2 0.00
885 209 0.04
886 96 0.02
887 50 0.01
897 1 0.00
899 6 0.00
900 1 0.00
902 42 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (860 bp):
AGCACGCTGAGGGGGACCCAGCCGATCCCCAGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCG
CCCACACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
AGACCGAGGGTTGAGGTGCACATACTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTTGCCC
GGGGCATCATCGCATCTCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATTGGGGGGCCGA
GGGGGTGTCGCACATGAGTCGATGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
CAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTT
TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
AAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
CTATCGATCCACGGCTTACGCATCCCACCTCTCTAGCCGGCGTATTGCCCGCCCGCCCACTCGTT
TCATCGGTTGCCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTAC
AGCATAAGGATCAGC
Found at i:1652812 original size:26 final size:26
Alignment explanation
Indices: 1652776--1652828 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1652766 GTTGACTTAG
*
1652776 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1652802 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1652828 G
1 G
1652829 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1654932 original size:878 final size:871
Alignment explanation
Indices: 1651083--1659247 Score: 9384
Period size: 878 Copynumber: 9.3 Consensus size: 871
1651073 TATCCCACCT
* * * * * * *
1651083 CTCGGGCATGTGGTAGTGCCGCATTTTTTTTCGTCCAGGGCACCATCGTCGAAGCATCATCGGAG
1 CTCGGGCTTGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCATCGGAG
* * * *
1651148 AACCTGACCGGCGGCATTAGGGTTCCGATGATTGGGGGGGCCGGGGGGTGTGCGCGCACATGATG
66 AACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGG-CGGGGGGTGTGTGCGCACATGATG
* * *
1651213 TGTGTTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTC
129 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1651278 ACACCCCCTTAAGGACCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAA
194 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * * *
1651343 ATGGGGACACTTTTTTCAAATGGTAACAAAATCCTATACAATTCAAGTTTTGTAGCTGGA-TTCT
259 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTT-TAGCTGAATTTTT
* * * *
1651407 TTATGCATGCCAACCAAAAATA-AAGGGATGACAGTTCTACCAAGTTT-GGGCCAAAACTCCTTT
323 TTGTGCATGCCAA-AAAAAATACAA-GGATCAC-G-TCTACCAAGTTTGGGGCCAAAACTCCTTC
* * ** *
1651470 TGAAAAAATTTTAAAAAAAATCCTCGAACCATAAAACGTTTTGAAAAT-TTGTAAAAAATAGAAA
384 TGAAAAAATTTT-AAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATG--AAAAATAGAAA
1651534 ACGAGTCGTCTTGCCATGAAACTTCAACATGAAGGCTTAAGGGACCATTGTATGGAATGTTACAA
445 ACGAGTCGTCTTGCCATGAAACTTC-ACATGAAGGCTTAAGGGACCATTGTAT-GAAT-TTACAA
1651599 GCCATAAAAATGGCATTGGCATGGCAGAAA-ATGAAGATGTGCCTAAACCCAACCTACCACCCTA
507 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC-ACCTACCACCCTA
* *
1651663 TCGATCCACGGCTTTACGCA-CCCGCCTCTCTGGCCAAGCGTAGTGCCTC-CGCCCGCCCTGCTC
571 TCGATCCACGGC-TTGCGCATCCCGCCTCTCTGGCC-GGCGTAGTGCC-CGC-CCCGCCC-GCTC
* * * * * * * *
1651726 GATTTCGTCAGTTCGTTTAGGTATATGAAGTTCATT-CCAGTCTAAGAT-GGACCAAACCGGGAG
631 G-TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACC--GAG
* * * * ** * * *
1651789 TGTTGCAGTAGCAGGATCAGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTACGCATCTT
693 GGTTGCGGCAGCAGGATCGGCAGCACG-A-AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCT
* * * * * *
1651854 GCCCCTGTGGTCGACAT-AGCCCCCGCAAGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
756 GCCCCTCTGGCCGAC-TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * * *
1651918 ATTCCCAGTCTAAGATCAAATCGGACCAAGAGTTGCGGGTGCACATGCTGGG
820 ATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * ** * *
1651970 CTC-GGCTATGTGCTGGTGCCATATTTTTTTTCACTCGGGGCACCATCACCGGAGCATCGTCGAA
1 CTCGGGCT-TGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCATCGGA
* *
1652034 GAACCTGACCGACGGCATTGGGTTTCCGACGATTGGGGTGGCCGGGGG-GTGTGCGCACATGATG
65 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGG-GGCGGGGGGTGTGTGCGCACATGATG
* *
1652098 TGCGATGGGTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTCCAGAACTC
129 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1652163 A-ATCCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTGCCACTAGCCATTAAAGTGTATGA
194 ACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
1652227 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTGGCTGAATTTTT
258 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
1652292 TTGTGCAAGCCAACAAAAATACAAGGATCATGTCTACTAAGTTTGGGACCAAAAATCCTTCTGAA
323 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* *
1652357 AAAA-TTTAAAAAAAGTCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
388 AAAATTTTAAAAAAA-TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
1652421 GTCTTGCCATGAAACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAA
452 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
1652486 TGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
517 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
1652551 ATTGCGCATCCCACCTCTCTGGCCGGTGTAGTGCCCG-CCCACCCGCTCGTTTCGTCGGTTGGCT
582 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * ** * * *
1652615 TAGGCATACGGAGTTCATTCCTAGTCTAAGAT-TGGGCCAGACCGAGGGTTGCGGCAGTAGGATT
647 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGCGGCAGCAGGATC
* * *** * * * *
1652679 GGCAGCACATAAAGGGGACCCAACCGATCCTCGGCATACGAATCCTGCCCCTCTGGCCGACTGAG
711 GGCAGCAC-GAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAG
* * * **
1652744 CACCCGCACGTTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
775 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--
* *
1652809 GAGTTCATTCCCAATCTAAGATCGGATCGGACCAAGGGTTGCGGGTGCACATGTTGGG
832 -AG----------ATC--AGATC--A---GACCGAGGGTTGCGGGTGCACATGCTGGG
* ** * * * *
1652867 CTCGGG-TATGTGTTGGTGCCGTAATTTTTTTCG-CCTGGG--CCA----C----CATCACCGCA
1 CTCGGGCT-TGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCATCGGA
* * * * ** *
1652920 GAACCTGACTGGCGGCATTTGGGTTCTGGGGATTGGGCGGGC-AGGGG-GTGTGCGCACATGATG
65 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGG-GGGCGGGGGGTGTGTGCGCACATGATG
*
1652983 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTC
129 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * **
1653048 ACACCCTCTTGAAGAGTATCAGAGATTTTACAGGTTT-CTGCCAGTAGCCATTAAAGTGTCTGAA
194 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1653112 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATGTTTT
259 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
1653177 TGTGCATGCCAAAAAAAATACAACGATCTCATCTACCAAGTATGGGGCTAAAAATTCTTCTGAAA
324 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * *
1653242 AAATTTTAAAAAAAATCTTGAACCGTAAAAAGTTTCTAAAATCGTG-AAAATAGAAAACGAGTCG
389 AAATTTT-AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
1653306 TCTTGCCATGAAACTTCAAATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAAT
453 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
1653371 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGAC
518 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** * ***
1653436 TTGCGCATCCCGTCTCTCTGGCCAACGTAGTACCC-TTTCGCCCGCTCGTTTCGTCGGTTGGCTT
583 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
1653500 AGGCATACGGAGTTCATTCCCAGGCTAAGATCAGA-CTGGACTGAGGGTTGCGGCAGTAGGATCG
648 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC-GAACCGAGGGTTGCGGCAGCAGGATCG
* *** * * * * *
1653564 ACAGCACGCAGAAAAGGACCCGGTCGATCCTCGACTTGTGCATCCTACCCCTCTGGTCGACTGAG
712 GCAGCACG-A-AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAG
* * * *
1653629 CGCCCGCACGCTCGTTTCACGGGTTGACTTAGGCATACAGAGTTGATTCCCAGTATAAGATCTA-
775 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AG
* *
1653693 ATC-GAATCGA-GGTTGCGGGTTCACATGCTGGG
839 ATCAG-ACCGAGGGTTGCGGGTGCACATGCTGGG
* * *
1653725 CTCGAGCATT-TGCTGGTGTCACATTTTTTTTCGCCCGGGGCACCA---TC---G---C--CGTA
1 CTCGGGC-TTGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCATCGGA
*
1653778 GAACCTGACCGACGGCATT-GGGTTCC-AGCGATTGGGGGGC-GGGGG-GTGTGCGTACATGATG
65 GAACCTGACCGACGGCATTGGGGTTCCGA-CGATTGGGGGGCGGGGGGTGTGTGCGCACATGATG
* **
1653839 TGCGATGCGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTC
129 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1653904 ACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAA
194 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
1653969 ATGGGGACACTGTTTTCAAGTGGTCACAAAATCCTATACCCTTCGAGTTTTTAGCTGAATGTTTT
259 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
1654034 TGTGCTTGCCAAGAAAAATACAAGAATCACATCTATCAAGTTTGGGGCCAAAAGTCCTTCTGAAA
324 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
*
1654099 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
389 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
1654164 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATG
454 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1654229 GCATTGCCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
519 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
1654294 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCGCCCGCTCGTTTCGTCGGTTGGCT
584 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC--CGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * *
1654359 AACGCATACGAACTTCATTCCCAGTGTAAGATCAGATCGAACCGATGGTTGCAGTAGCAGGATCA
647 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCG
* ** *
1654424 ACAGTTGCGAAGGGGGACCCGGTCGATCCCCGGCTAGCGCATCCTGCCCCTCTGGCCGACTGAGC
712 GCAG-CACGAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGC
* * * * *
1654489 GCCCGCACGCTCATTTCATGGGTAGACTTAGGTATACGGAGTTCATTCCCAATCTAAGCATCATA
776 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGA
*
1654554 TCAGACCGAGGGTTGCGGTTGCACATGCTGGG
840 TCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
1654586 CTTGGGCTTGTGCTGGTGCTACATTTTTTTTCACCCGGGCCACCATCGTCGGAGCATCACCGGAG
1 CTCGGGCTTGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCATCGGAG
* *
1654651 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGAGGGGCGGGGGGTGTGTGTGCACACATGAT
66 AACCTGACCGACGGCATTGGGGTTCCGACGATTGG-GGGGC-GGGGG-GTGTGTGCGCACATGAT
* * * * *
1654716 GTGCGATGCGTGCTGTTACTTGGCCCTTATATTGGACCCCTATGCCTCATCAAACCTCAAGAACT
128 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
1654781 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTAA
193 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
1654846 AATGGGAAAACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
258 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
1654911 TTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAATTCCTTTTGAA
323 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * * *
1654976 AAAATTTTAAAAAAATCCCGAACCATAAACAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
388 AAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
1655041 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTACGAATTTACAAGCCATAAAAAT
453 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
1655106 TGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCCTATCGATCCACGGC
518 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* ** *
1655170 TTGCGCATCCCGCCTCTCTGGTCGATGTAGTGCCCG-CCCGCCCGCTCGTTTCGTCGGTTGACTT
583 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * ** * *
1655234 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTAAGGGTTGCAGCAGCAAGATCGG
648 AGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * *
1655299 TAGCATGCAGAA-GGGGACCCGGTCGATCCCCGACTTCCGCTTCCTGCCCCTTTGGCCGGCTGAG
713 CAGCA--C-GAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAG
* * * *
1655363 CGCCCACACGCTCGTTTCCTGGGTTGACTTAGCCATACGGAGTTCATTTCCAGTCTAAGCATACA
775 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T--A
** *
1655428 GAGTTCATTCCCAGTCTAAGATCAAATTGGACCGAGGGTTGCGGGTGCTTATCCTGGG
832 -AG---------A-TC--AGATC--A---GACCGAGGGTTGCGGGTGCACATGCTGGG
* * ** * ** *
1655486 CTCGGG-TATGTGCTGGTGCCGCATTTTTTTT-TCCCAAGCCACCATCACCGGAGCATCATCAGA
1 CTCGGGCT-TGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCATCGGA
* *
1655549 GAACCTGACCGGCGGCATTGGGGTTCC-AGCGATTGGGGGGGCAGGGGGGTGTGTGCACACATGA
65 GAACCTGACCGACGGCATTGGGGTTCCGA-CGATT-GGGGGGC-GGGGGGTGTGTGCGCACATGA
*
1655613 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAAC
127 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1655678 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTA
192 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
1655743 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTT
257 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
1655808 TTTGTGCATGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGAG-CAAAACTCCTCCTG
322 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG-GCCAAAACTCCTTCTG
* ** *
1655872 AAAAAATTTTGAAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAG
386 AAAAAATTTT-AAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
1655937 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
450 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
1656002 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCAC
515 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
1656067 GGCTTGCGCATCCCGGCCCGCTCTGGTC-GCGTACGTGCCCGCCGGCCGTCCGCTCGTTTCGTCC
580 GGCTTGCGCATCCC-G-CCTCTCTGGCCGGCGTA-GTGCCCGCC--CCGCCCGCTCGTTTCGT-C
* * * * *
1656131 GGTTGGATTAGGCATAC-AGCGTTCGATTCCCATTCTAGAGATCTTGATCCTAGACCGAGGGTTG
639 GGTTGGCTTAGGCATACGA-AGTTC-ATTCCCAGTCTA-AGATC-AGAT-CGA-ACCGAGGGTT-
* * * * ** *
1656195 GCGGCACGCA-GATCGACGGCATCGCAGAGGTGGACTCGACCGAT-CCCGACTTGCGCATCCTGC
697 GCGGCA-GCAGGATCGGCAGCA-CG-A-AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGC
* * * *
1656258 CCCTCTGGCTGGCTAAGCGGCCGCTAGACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
758 CCCTCTGGCCGACTGAGCGCCCGC---ACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
* * ** ** *
1656323 ATTCCCAGTCTAAGATCCGA-CTGGATTGAGGGTTATGGGTGCACATGCTAGG
820 ATTCCCAGTCTAAGATCAGATC-AGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * * * *
1656375 CTCAGGCATGTGCTGGTCCCACATTTTTTTTCGCCCGGGGCACCATCATTGGACCATCGTCGAAG
1 CTCGGGCTTGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCATCGGAG
* * * * *
1656440 AACCTGATCGACGGCATTGGGGTTCCGACGATTAGGAGGTCGGGGGGGGTGTGTGCACATGATGT
66 AACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGTGTGTGCGCACATGATGT
* * * *
1656505 GTGATGGGTGCCGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
130 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
1656570 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGTCAGTAGCCATTAAAGTGTCTGAAA
195 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1656635 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAGTTCAAGTTTTTAGCTGAATTTTTTT
260 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
1656700 GTGCATGCC-AAAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCTTCTGAAAA
325 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* *
1656764 AATTTTAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
390 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
1656829 TTGCCATGAAACCTCACATGAAGGCTTAAGGGACCATTATATGAATTTACGAGCCATAAAAATGG
455 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * * * *
1656894 CATTGGCATGACGGAAATATGAATATGTTCCTAAACCAACCTACCACCGTATCGATACAGGGCTT
520 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
1656959 -CGCATCCCGCCTCTCTGGCCGACGTTGTGCCCGCCTGCCCGCCCGCTCATTTTGTCGGTTGGCT
585 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-C--CCCGCCCGCTCGTTTCGTCGGTTGGCT
** * * * *
1657023 TAGGCATACGGGGTTCATTCCCAGTGTAAGATCAGATC-AGACTGAGGGTTGCGGTAGTAGGATC
647 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGCGGCAGCAGGATC
* * * * *
1657087 GACAGCACACAGAGGGGGACCCGGTCGATCCCCGGTTTGCGCATTCTACCCCTCTGGCC-AGCTG
711 GGCAGCAC-GA-AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGA-CTG
* * * * **
1657151 AGCGCCCGCACGCTC-ATTCATGGGTTGACTGAGGCTTACAGAGTTCATTCCCAGTCTAAGATGG
773 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* *
1657215 GA-CCGAACCGAGGGTTGTGGGTGCACATGCTGGG
838 GATCAG-ACCGAGGGTTGCGGGTGCACATGCTGGG
* * *** * * * *
1657249 CTTGGGCATGTGCTGGTGCTGTATTTTTTTTTTGCCCAGGCCAACATCGCCATCGCCAGAGCATC
1 CTCGGGCTTGTGCTGGTGCCACA-TTTTTTTTCGCCCGGGGCACCATCG---TCG---GAGCATC
* *
1657314 GA-CGGAGAACCTGCCCGACGACATTGGGGTTCC-AGCGATTGGGGGGC-GGGGGTGGTGTGCGC
59 -ATCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATTGGGGGGCGGGGGGT-GTGTGCGC
*
1657376 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTC
121 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
1657441 GAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGTCAGTAGCCATTAAAG
186 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
1657506 TGTCTAAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA-CTT
251 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC-T
* * * *
1657570 GAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACAC
315 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
1657635 CTTCTGAAAAAATTTTGAAAAAATCACGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAAAAA
380 CTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
1657700 ACAAGTCGTCTTGCCATGAAACTTCACATGATGGCTTAAGGGACCA---T-TG---------G--
445 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
1657750 -T----A--G----GGCA--G-A-AAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGA
510 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * *
1657800 TCCACGGCTTGCGCATCCCGCCTCTTTGGCCGACGTAGTGCCCG-CCC-ACCGCTTCGTTTCGTT
575 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGC-TCGTTTCG-T
* ** * * *
1657863 CGGTTGGCTTAGGCATACTG-AGTTCATTCCCAGTCTGAGATTGGATC-AGACTGAGGGATGTGG
638 CGGTTGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGATCAGATCGA-ACCGAGGGTTGCGG
* * * *
1657926 CAGCAGGATCGGTAGCACGTAGAGGGGGACCCAGTCGATCCCCGGCATGTGCATCCTGCCCCTCT
701 CAGCAGGATCGGCAGCACG-A-AGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCT
* * * * *
1657991 GGCC-AGCTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTTATTCCCAG
764 GGCCGA-CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * *
1658055 TCTAAGATCGGATCAGACCGAGGGTTGTGGGTGCACATGCTGGT
828 TCTAAGATCAGATCAGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * * * * *
1658099 CTCGAGCATGTGCTGGT-CCCCATTTTTTTT-GCCTGGGGCACCATC-ACCGAACATCGTCGGAG
1 CTCGGGCTTGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCATCGGAG
* * * *
1658161 AACCTGATC-AGCGGTATTGGGGTTCTGACGATTGGGGGGGCCGGGGG-GTGTGCGCACATGATG
66 AACCTGACCGA-CGGCATTGGGGTTCCGACGATT-GGGGGGCGGGGGGTGTGTGCGCACATGATG
* *
1658224 TACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
129 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
1658289 AAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTGTCTGAA
194 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
1658354 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
259 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** *
1658419 TGTGCACACCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCTGAAA
324 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * * *
1658484 AAATTTTAAAAAAATCTGGAACCGTAAAAAGTTTTAAACATCGTGAAAAATAGAAAACAAGTCGT
389 AAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
1658549 CTTGCCATCAAACTTCACATGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
454 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
1658614 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
519 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
1658679 TGCGCGTCCCGTCTTTCTGGCTGGCGTAGTGCCAG-CCCACCCGCTCATTTCGTTGGTTGGCTTA
584 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** * * * *
1658743 GGCATAC-AGAGTTCATTCCCAGTCTAAGATCAAACCGGATAGAGGGTTGCAGCAACAAGATCAG
649 GGCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCGG
* * * * * ** * * *
1658807 CAGCACACTAAGAGGGACCCAGCCGATCCCTGGCTTTTGCATCCTCCCCCTCTGGCCGGCAGAGC
713 CAG--CACGAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGC
* * * * *
1658872 GCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGAC
776 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
* * * *
1658937 CAAACTGAGGGTTGCGGGTGCATATG-TTGG
841 CAGACCGAGGGTTGCGGGTGCACATGCTGGG
* ** * ** * * ** *
1658967 CTCAGGAATGTGCTTGTGCCGTATTTTTTTTCACCCGGGGCACCATCGCCAAAGCATCGTCGGAG
1 CTCGGGCTTGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCATCGGAG
* * * *
1659032 AACCTAACCGACAGCATTGGGGTTTCGACGATTGGGGGGGCCGGGGGGTGTATGCGCACATGATG
66 AACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGG-CGGGGGGTGTGTGCGCACATGATG
* * * *
1659097 TGTGATGGGTGCTGATACTTGGCCCTTATTTTTGCCCCCTATCCCTCATCAAACCTCGAGAACTC
129 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
1659162 ACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAA
194 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
1659227 ATGGGGACACTTTTTTTCAAA
259 ATGGGGACAC-TTTTTTCAAA
1659248 ATAGAAAACG
Statistics
Matches: 6286, Mismatches: 764, Indels: 469
0.84 0.10 0.06
Matches are distributed among these distances:
839 1 0.00
840 381 0.06
841 9 0.00
842 5 0.00
843 2 0.00
844 2 0.00
847 15 0.00
848 17 0.00
849 133 0.02
850 86 0.01
851 46 0.01
852 31 0.00
853 1 0.00
855 4 0.00
856 151 0.02
857 336 0.05
858 64 0.01
859 107 0.02
860 95 0.02
861 64 0.01
862 2 0.00
864 5 0.00
865 2 0.00
866 7 0.00
867 1 0.00
868 17 0.00
869 198 0.03
870 103 0.02
871 144 0.02
872 80 0.01
873 179 0.03
874 189 0.03
875 119 0.02
876 27 0.00
877 152 0.02
878 486 0.08
879 45 0.01
880 251 0.04
881 217 0.03
882 22 0.00
883 34 0.01
884 459 0.07
885 447 0.07
886 69 0.01
887 254 0.04
888 55 0.01
889 258 0.04
890 61 0.01
891 1 0.00
892 6 0.00
893 3 0.00
894 5 0.00
895 4 0.00
896 6 0.00
897 55 0.01
898 267 0.04
899 219 0.03
900 87 0.01
901 4 0.00
902 17 0.00
903 1 0.00
905 16 0.00
906 22 0.00
907 12 0.00
908 4 0.00
909 3 0.00
910 3 0.00
911 10 0.00
912 50 0.01
913 15 0.00
915 43 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
CTCGGGCTTGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGCATCATCGGAG
AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGAAGTTCATTCCCAGTCTAAGATCAGATCGAACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGAAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGCCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
CGAGGGTTGCGGGTGCACATGCTGGG
Found at i:1655432 original size:26 final size:26
Alignment explanation
Indices: 1655396--1655447 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1655386 TTGACTTAGC
* *
1655396 CATACGGAGTTCATTTCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
1655422 CATACAGAGTTCATTCCCAGTCTAAG
1 CATACAGAGTTCATTCCCAGTCTAAG
1655448 ATCAAATTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAG
Found at i:1662259 original size:867 final size:867
Alignment explanation
Indices: 1660297--1664777 Score: 5366
Period size: 867 Copynumber: 5.1 Consensus size: 867
1660287 NNNNNNNNNC
* * **
1660297 CGGAGAACCTGACC-AAATGGCATTGGGATTCCGACGATT-GGGGGG-CGGGGGGTGGGTGCGTA
1 CGGAGAACCTGACCGACA--GCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGT--GTGCACA
* *
1660359 CATGATGTTTGCGATCGGTGCTGGTACTTGGCCCTT-TATTAGCCCCCTATCCCTCATCAAACCT
62 CATGATG--TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
1660423 CGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAA
125 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* *
1660487 GTGTCTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCT
190 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
* * * *
1660552 GAACTT-TTTTATGCATGCCCACAAAAAGACAAGGATCATGTCTACCAAGTTTGGGCCAAAACTC
255 GAA-TTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTC
* *
1660616 CTTCTGAAAAAA-TTTAAAAAAACCTCGAACCGTAAAAAGTTTCAAAAATCATGTAAAATAGAAA
319 CTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
1660680 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
384 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* *
1660745 ATAAAAATGGCATTGCCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
449 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT-GA
* * * * *
1660810 TCCATGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCTCGCCCGACCGCCCGATCGTTTCG
513 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
* * * * ** *
1660875 TCGGTTGGCTTGGGTATACGGAGTTCATTCCCAGTCTACGATTGGATTGGA-TCGAGGGTTG-CA
578 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACT-GAGGGTTGTGA
* * * * * * *
1660938 GCAGCAGGATTGGCAGCACACTGAGGGGGACTCGATCGATCTCGGGCTTGCTCATCCTGCCCCAC
642 -CAGCAGGATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTC
* * * * *
1661003 TGGGCGGCTGAGCACCCGTACGCTCATTCCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAG
706 TGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * *
1661068 TCTAAGATCGGACCAGACCGAGGGTTGTAGGTGCAGATGTTGGGCTCGGGCATGTGCTGGTGCCA
771 TCTAAGATCGGACCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * *
1661133 CATTTTTTTTCGCCTGGGCACCATCGTTGGAGCATTGT
836 CATTTTTTTTCGCCCGGG------CGCTGGACCATCGT
1661171 CGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGA-ACAT
1 CGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGC-ACACAT
* *
1661235 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
* * * *
1661300 ACTCACACCCACTTAAAGAGCATTTGAGATTTTACGGGTTTGCTACCAGTAGCCATTAAAGTGTT
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
1661365 TGAAATGGGGACACTTTTTTGAAATGGTCACAAAAACCTGTACACTTCGAGTTTTTAGCTGAATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* *
1661430 GTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCATGTTTGGCGCCAAAACTCCTTCT
260 GTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTCCTTCT
1661495 GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
324 GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
1661560 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
389 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
1661625 AATGGCATTTCGCATGGCAGAAATATGATGATGTGCTTAAACCCACCTACCACCCTACTGATCCA
454 AATGGCA-TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-TGATCCA
** *
1661690 CGATTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
517 CGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * *
1661755 TTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGACAGCA
582 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGACAGCA
* *** * * * * *
1661820 GGATCGGTAGCATGGTAAGCGGGGGACCCGACCGATCCTCGGTTTACCCATCCTGCCCCTCTGGC
647 GGATCGGCAGCACACT--GAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTCTGGC
* * *
1661885 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTCA-GCTTACGGAGTTCATTCCTAGTCT
710 CGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT-AGGCATACGGAGTTCATTCCCAGTCT
* ** * * ** * *
1661949 AAGATCAGA-TGGACCGACGGTTAC-GAGTGCACATGCTGGGCTCAAGTATGTGCTGGTGCCGTA
774 AAGATCGGACCAGACCGAGGGTTGCAG-GTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
1662012 -TTTTTTTCGCCCGGG-G-T-G-CCATCGT
838 TTTTTTTTCGCCCGGGCGCTGGACCATCGT
* * * * *
1662037 CGGAGAACCCGACCAACGGCACTGGGGTTCC-AGCGATTGAGGGGGGCCGGGGGGTGCGCACACA
1 CGGAGAACCTGACCGACAGCATTGGGGTTCCGA-CGATTG-GGGGGGCCGGGGGGTGTGCACACA
* * *
1662101 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTTATCAATCCTTGAG
64 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
1662166 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
129 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
1662231 CTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTGGAGTTTTTAGCTGAAT
194 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAT
* * *
1662296 TTTTTTGTGAATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
259 TGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTC
* *
1662361 TGAAAAAATTTTAAAAAAATCTTGAACCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGA
323 TGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
1662426 GTCGTCTTGCCATGAAACTTCACATGAAGGCTCAAGGGA-CATTGTCTGAATTTACAAGCCATAA
388 GTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* * *
1662490 AAATGGCATTGGCACGGTAGAAATATGAAGATGTGCCTAAACCCACCT---A---T-CGATCCAC
453 AAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGATCCAC
* * * *
1662548 GGCTTGCGCATCCCGCCTCTATGGCC-AGCGTAGTGCCCGTCGGCCCGCCCGCTCGTTTCGTCTG
518 GGCTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * *
1662612 TTGGCTTAGGCATACAGAGTTCATTCCCACTCTAAGATCAGG-CCGGACCGAGGGCTGTGGCAGC
582 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCGGACTGAGGGTTGTGACAGC
* * * *
1662676 AGGATCGGTAGGACACTGAGGGGGACCTGACCGATCCCCGGCTTGCACATCCTGTCCCTCTGGCC
646 AGGATCGGCAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCC
*
1662741 GGCTGAGCACCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTTCCAGTTTAA
711 GGCTGAGCACCCGCACGCTCGTTTC----G-TG-----GG--T--TGA---C--TT--AG-----
** * *
1662806 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCAGGTGCACATGTTGGG
750 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGGTGCACATGCTGGG
* * * *
1662871 CTTGGGCATGTGCTGGTGCCGTATTTTTTTTTGCCCGAGGTACCATCGCTGGAGCATCGT
815 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCG-GG------CGCTGGACCATCGT
* ** * *
1662931 CGGAGAACCTGACCGGCAGCATTGGGGTTCCGGTGA-TGGGGGGGCCGTGGGGTGTGCGCACATG
1 CGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCACACATG
* * * * *
1662995 ATTTGTGATGGGTGCGGGTACTTGGCCCTTATATTGACCCCCTATCGCTCATCAAACCTTGAGAA
66 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
1663060 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
131 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * * *
1663125 AAAATGGGGACACTTTTTTCAAATGCTCACAAAATCCTTTACACTTCGAGTTTTTCGCTAAATTG
196 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTG
* *
1663190 TTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTTTTG
261 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTCTG
* * *
1663255 AAAAAATTTTAAAAAATTCTCGAACTGT-AAAAGTTTCAGAAATCATGAAAAATAGAAAACGAGT
325 AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
1663319 CATCTTGCCATGAAAGTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
390 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
1663384 ATGGCGTTGGCATGACAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCAATTGATCCACG
455 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA-TGATCCACG
* * * *
1663449 GCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCACCCGCCCGCCCGCTCGTTTCGTCGATT
519 GCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* ** *
1663514 GGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAAACTGAGGGTTGTGGCAGCAGG
584 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGACAGCAGG
* * * *
1663579 ATTGACAGCACGA-TGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGG
649 ATCGGCAGCAC-ACTGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGG
* * *
1663643 CTGAGCGCCCGCACGCTCGTTTGGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
713 CTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * **
1663708 TCGAACCAGATCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGTATGTGCTGGTGTTGCATTTTT
778 TCGGACCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* *
1663773 TTTCACCTGGG-GC---ACCATCGT
843 TTTCGCCCGGGCGCTGGACCATCGT
* * * * * * ** *
1663794 TGGACAACCTGATCGACGGCATTGAGGTTCCGATGATTGATGGGCCCGGGGGGGTGTGCACACAT
1 CGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGGGCC-GGGGGGTGTGCACACAT
*
1663859 GATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
65 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
*
1663924 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTC
130 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
1663989 TGTAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATT
195 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* *
1664054 GTTTTGTGCATGCCAACAAAAATACAA-GATCACGGTCTACCAAGTTGGGGCC-AAACTCTTTCT
260 GTTTTGTGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGCCAAAACTCCTTCT
*
1664117 GAAAAAA-TTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAATCATGAAAAATAGAAATCGA
324 GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTC-AAAAATCATGAAAAATAGAAAACGA
* * *
1664181 GTCATTCTTGCCATGAAACTTCACGTGATGGCTTAAGGG-CCATTGTATGAATTTACAAGCCATA
388 GTC-GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
*
1664245 AAAAT-G--TTGGCACT--TAG-AATATGAAGATGTGCCT-AACCCACCTACCA-CCTATCGATC
452 AAAATGGCATTGGCA-TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT-GATC
* * ** *
1664302 CACGGC-TGCGCAT-CCGTCTCTCTGGCCGACGTAGTG-CCGCGCTG-CCGCATTG-TCGTTTCA
515 CACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGC-CCGCCCGC-CCGCTCGTTTCG
** * *
1664362 TC-GTTGGCTTAGGCATATCGGAGTTCATTTTC-GTCTAAGATCGGA-CAGACTGAGGGTTG-CA
578 TCGGTTGGCTTAGGCATA-CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGA
** * * * * * *
1664423 GCA-CAGGATCGATAGCA-GCTAAGAAGGGACTC-ACGGA--CCTGGCTTGCGAC-TCCTG-CCC
642 -CAGCAGGATCGGCAGCACACTGAG-GGGGACCCGACCGATCCCCGGCTTGC-ACATCCTGCCCC
** **
1664481 TCT-G--TACTGAGGGCCCGCACGCTC--TTCGT-GGTTGACTTTAGGCATACGGATGTTCA-TC
704 TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCATACGGA-GTTCATTC
* *** * * * *
1664539 CCA-TCTAAGATCAGAAGTGCATCC-AGGGTTACGGGTGCACATGCTAGGCTCGGGCATGTGTTG
767 CCAGTCTAAGATCGGACCAG-A-CCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTG
* * * **
1664602 GTGCCGCA-TTTTTTTCGCTCGGGCCACCATCGTCGGAGCATCAC
830 GTGCCGCATTTTTTTTCGCCCGGG----C-GC-T-GGACCATCGT
* * * * **
1664646 CGAAGAACCTGACTGGCGGCATTGGGGTTCCGGTGATTGGGGGGCTCGGGGGGCTCGGGGGGGCT
1 CGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATT-----G---GGGGGGC-C-GGGGGG-T
* * *
1664711 GTGCGCACATGTTGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
55 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
1664776 AA
120 AA
1664778 GTGTCTGGAA
Statistics
Matches: 3147, Mismatches: 343, Indels: 246
0.84 0.09 0.07
Matches are distributed among these distances:
841 30 0.01
842 62 0.02
843 6 0.00
844 17 0.01
846 1 0.00
847 7 0.00
848 14 0.00
849 1 0.00
850 6 0.00
851 18 0.01
852 50 0.02
853 26 0.01
854 28 0.01
855 88 0.03
856 9 0.00
857 142 0.05
858 14 0.00
859 19 0.01
860 8 0.00
861 14 0.00
862 85 0.03
863 62 0.02
864 71 0.02
865 306 0.10
866 73 0.02
867 363 0.12
868 3 0.00
869 3 0.00
871 25 0.01
872 42 0.01
873 188 0.06
874 133 0.04
875 139 0.04
876 186 0.06
877 43 0.01
878 99 0.03
879 3 0.00
881 32 0.01
882 44 0.01
883 14 0.00
884 2 0.00
886 2 0.00
888 1 0.00
890 2 0.00
891 72 0.02
892 355 0.11
893 3 0.00
894 34 0.01
895 3 0.00
896 1 0.00
899 2 0.00
900 195 0.06
901 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (867 bp):
CGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCACACATG
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTG
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGA
AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATGATCCACGGC
TTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGACAGCAGGAT
CGGCAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGGCTG
AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG
GACCAGACCGAGGGTTGCAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTT
CGCCCGGGCGCTGGACCATCGT
Found at i:1662811 original size:26 final size:26
Alignment explanation
Indices: 1662780--1662832 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1662770 GTTGACTTAG
* *
1662780 GCATACGGAGTTCATTTCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1662806 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1662832 G
1 G
1662833 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1665543 original size:794 final size:772
Alignment explanation
Indices: 1663981--1665559 Score: 1867
Period size: 794 Copynumber: 2.0 Consensus size: 772
1663971 AGTAGCCATT
* *
1663981 AAAGTGTCTGTAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTA
1 AAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
*
1664046 GCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGATCACGGTCTACCAAGTTGGGGCCAAACT
66 GCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGATCACGGCCTACCAAGTTGGGGCCAAACT
* *
1664111 CTTTCTGAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAAATCATGAAAAATAGAA
131 CCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAATCATGAAAAATAGAA
* * * * *
1664176 ATCGAGTCATTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGCCATTGTATGAATTTACAAGC
196 AACAAGTCAGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGCCATTGTATGAATTTACAAGC
* * *
1664241 CATAAAAATGTTGGCACTTAGAATATGAAGATGTGCCTAACCCACCTACCACCTATCGATCCACG
261 CATAAAAATGTTGGCACTCAGAATATGAAGATGTGCCTAA--CAAC-ACCACCTAT--AT-CAAG
* * * ** *
1664306 GCTGCGCATCCGTCTCTCTGGCCGACGTAGTGCCGCGCTGCCGCATTGTCGTTTCATCGTTGGCT
320 GCTGCGCATCCGCCTCTCTGGCAGACGTAGTGCCGCGCTACCGCACCGTCATTTCATCGTTGGCT
** * * *
1664371 TAGGCATATCGGAGTTCATTTTCGTCTAAGATCGGACAGACTGAGGGTTGCAGCACAGGATCGAT
385 TAGGCATATCGGAGTTCATTCCCGTCTAAGATCAGACAGACCGAGGGTTGCAGCACAGGATCGAC
* * * * *
1664436 AGCAGCTAAGAAGGGACTCACGGACCTGGCTTGCGACTCCTGCCCTCTGTACTGAGGGCCCGCAC
450 AGCAGCTAAG-AGGGACCCACCGACCCGGCTTGCGACTCCTACCCTCTGTACTGAGCGCCCGCAC
* * *
1664501 GCTCTTCGTGGTTGACTTTAGGCATACGGATGTTCATCCCATCTAAGATCAGAAGTGCATCCAGG
514 GCTCTTCATGGTTGACTTCAGGCAAACGGATGTTCATCCCATCTAAGATCAGAAGTGCATCCAGG
* *
1664566 GTTACGGGTGCACATGCTAGGCTCGGGCATGTGTTGGTGCCGCATTTTTTTCGCTCGGGCCACCA
579 GTTACGGGTACACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCTCGGG------
* * * *
1664631 TCGTCGGAGCATCACCGAAGAACCTGACTGGCGGCATTGGGGTTCCGGTGATTGGGGGGCTCGGG
638 -CGT--GACCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATT----GG--CGGG
* * *
1664696 GGGCTCGGGGGGGCTGTGCGCACATGTTGTGCGATGGGTGCTGGTAGTTGGCCCTTATATTGGCC
694 AGGCTCGGGGGGGCTGTGCGCACATGATGTACGATGGGTGCTGGTAGTTGGCCCTTATATTGGCC
1664761 CCCTATCCCTCATC
759 CCCTATCCCTCATC
1664775 AAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
1 AAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* *
1664840 GCTGAATTTTTTTGTGCATGCCAAGAAAAATACAAGATCAC-GCCTACCAAGTTTGGGGCCAAAA
66 GCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGATCACGGCCTACCAAG-TTGGGGCC-AAA
* *
1664904 CTCCTTCTGAGAAAATTTTAAAAAAATCCCGAGCCGTAAAAAGTTTC-AAAAATCATGAAAAATA
129 CTCCTTCTGA-AAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAATCATGAAAAATA
*
1664968 GAAAACAAGTC-GTCTTGCCATGACACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
193 GAAAACAAGTCAGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG-CCATTGTATGAATTTAC
*
1665032 AAGTCATAAAAATGGCATTGGCA-TGGCAGAAATATGAAGATGTGCC-AA-AAC-CCACCTAT-T
257 AAGCCATAAAAAT-G--TTGGCACT--CAG-AATATGAAGATGTGCCTAACAACACCACCTATAT
* * * *
1665092 -AAGGCTTGCGCATCCTGCCTTTTTGGCAGGCGTAGTGCC-CGCCTACC-CACCCGCTCATTTCG
316 CAAGGC-TGCGCATCC-GCCTCTCTGGCAGACGTAGTGCCGCG-CTACCGCA-CCG-TCATTTCA
* * **
1665154 TCAGTTGGCTTAGGCATAT-GGAGTTCATTCCCAGTCTAAGATTAGACCGAACCGAGGGTTGTGG
376 TC-GTTGGCTTAGGCATATCGGAGTTCATTCCC-GTCTAAGATCAGACAG-ACCGAGGGTTGCAG
1665218 CAGCAGGATCGACAGCACGCTGAAG-GGGACCCGACCGATCCACGGCTTGC-ACATCCTACCCTC
438 CA-CAGGATCGACAGCA-GCT-AAGAGGGACCC-ACCGA-CC-CGGCTTGCGAC-TCCTACCCTC
* *
1665281 TGGCTGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTCA-GCAAACGGA-GTTCATTCCC
496 T-G-T-ACTGAGCGCCCGCACGC-T-CTTCAT-GGTTGACTTCAGGCAAACGGATGTTCA-TCCC
* * * * * *
1665344 AGTCTAAGATCAGACCG-G-ATCGATGGTTGCGGGTACACATGTTGGGCTCGGGCATGTGCTGGT
554 A-TCTAAGATCAGA-AGTGCATCCAGGGTTACGGGTACACATGCTAGGCTCGGGCATGTGCTGGT
* *
1665407 GCCGTATTTTTTTTTGCTCGGG-GT-ACCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCC
617 GCCGCA-TTTTTTTCGCTCGGGCGTGACCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCC
* *
1665470 GGCGATT-G-GGGAGGC-C-GGGGGG-TGTGCGCACATGATGTACGGTGGGTGCTGGTACTTGGC
681 GGCGATTGGCGGGAGGCTCGGGGGGGCTGTGCGCACATGATGTACGATGGGTGCTGGTAGTTGGC
1665530 CCTTATATTGGCCCCCTATCCCTCATC
746 CCTTATATTGGCCCCCTATCCCTCATC
1665557 AAA
1 AAA
1665560 CCTCAAGAAC
Statistics
Matches: 683, Mismatches: 67, Indels: 82
0.82 0.08 0.10
Matches are distributed among these distances:
782 64 0.09
783 6 0.01
784 1 0.00
785 6 0.01
788 1 0.00
789 4 0.01
790 13 0.02
791 24 0.04
792 19 0.03
793 80 0.12
794 162 0.24
795 86 0.13
796 45 0.07
797 8 0.01
798 23 0.03
799 5 0.01
800 17 0.02
801 15 0.02
802 6 0.01
803 60 0.09
804 37 0.05
805 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (772 bp):
AAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
GCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGATCACGGCCTACCAAGTTGGGGCCAAACT
CCTTCTGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAATCATGAAAAATAGAA
AACAAGTCAGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGCCATTGTATGAATTTACAAGC
CATAAAAATGTTGGCACTCAGAATATGAAGATGTGCCTAACAACACCACCTATATCAAGGCTGCG
CATCCGCCTCTCTGGCAGACGTAGTGCCGCGCTACCGCACCGTCATTTCATCGTTGGCTTAGGCA
TATCGGAGTTCATTCCCGTCTAAGATCAGACAGACCGAGGGTTGCAGCACAGGATCGACAGCAGC
TAAGAGGGACCCACCGACCCGGCTTGCGACTCCTACCCTCTGTACTGAGCGCCCGCACGCTCTTC
ATGGTTGACTTCAGGCAAACGGATGTTCATCCCATCTAAGATCAGAAGTGCATCCAGGGTTACGG
GTACACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGCTCGGGCGTGACCATCACC
GAAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTGGCGGGAGGCTCGGGGGGGCTGTGCGCA
CATGATGTACGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATC
Found at i:1668005 original size:26 final size:26
Alignment explanation
Indices: 1667963--1668015 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1667953 GTTGACTTAG
1667963 GCATACGGAGTTAATTC-CTAGTCTAA
1 GCATACGGAGTTAATTCTC-AGTCTAA
* *
1667989 GCATACGGATTTCATTCTCAGTCTAA
1 GCATACGGAGTTAATTCTCAGTCTAA
1668015 G
1 G
1668016 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTAATTCTCAGTCTAA
Found at i:1668900 original size:26 final size:26
Alignment explanation
Indices: 1668864--1668916 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1668854 GTTGACTTAG
*
1668864 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1668890 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1668916 G
1 G
1668917 GTCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1672459 original size:25 final size:26
Alignment explanation
Indices: 1672421--1672472 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
1672411 GTTGACTTAG
1672421 GCATACAGAATTCATT-CCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
* * *
1672446 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
1672472 G
1 G
1672473 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:1672991 original size:898 final size:898
Alignment explanation
Indices: 1670655--1675092 Score: 5179
Period size: 888 Copynumber: 5.0 Consensus size: 898
1670645 GTTGGCTTAG
* ** *
1670655 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTAGG
* * * * * ** * *
1670720 CTCGAGAATGTGCTGGTGCCATAATTTTTTTCT-CTCTAGGCACCATCGTTGGAGCATTATCGGA
66 CTTGGGCATGTGCTGGTGCCGT-ATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCATCGGA
* ** *
1670784 GAACCTGACC-ATCAAAGCATTAAGGTT-CTAGCGATTGGGGGGGCCGGGGGGGTGTGCGCACAT
130 GAACCTGACCGA-C--GGCATTGGGGTTCCGA-CGATT-GGGGGGCCGGGGGGGTGTGCGCACAT
* * *
1670847 GATGTGTGATGGGTGCTCGTACTTGGCCATTATATTGGTCCCCTATCCCTCATCAAACCTCGAGA
190 GATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
1670912 ACTCACACCCACATAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
255 ACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* ** * * *
1670977 TAAAATGGGGACACTTTTTTCAAATGACCACAAAATCCTATACACTTCGAGTCTTTGGCTGAATT
319 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-T
* *
1671042 TTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCT
383 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * * ** *
1671106 GAAAAAATTTGAAAAAAATACCGAACTGAAAAAAGTTTCAAAAATCATGAAAATTAGAAAACGAG
448 GAAAAAATTTTAAAAAAATCCCAAACTG-AAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAG
*
1671171 TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAA
512 TCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
1671236 AATGGCATTGGCATGGCATAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATTGAAT-CA
577 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCA
* * ** *
1671300 CGGCTTTCGTATCCCGCCTCTCTGGCCGGTTTAGTGCCCGCCCCCCCGCCCGCTCGTTTCGTCGG
641 CGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
** * ** * *
1671365 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACTGAGGGTCATGGTAGT
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGAC-GAAGGTTTTGGCAGC
* ** * * * * *
1671429 AGGATCGATAGCACACAAAGGGGGACCCGGTCGATCCTTGACTTGCGCATCTTGCCCTTCTGGCC
769 AGGATCGGTAGCACACTGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCC
* * *
1671494 GGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAATTCATTCCCAATCTAA
834 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
** * * * * * *
1671559 GCATAAAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACAGGTGCACAAGATAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTAGG
* *** * * *
1671624 CTCGGGCATACACTGGTGTCGTATTTTTTTTCGCCCGGGGCACCA---TC---G--TCA--GG-G
66 CTTGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCATCGGAG
** **
1671678 AACCTGACCGGTGGCATTGGGGTTCCGACGATTATGGGG-CGGGGGGTGTGTG-G-ACATGATGT
131 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGG-GTGTGCGCACATGATGT
** * * * *
1671740 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCCTCAAACCTCGAGAATTTA
195 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
1671805 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
1671870 TGGAGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTG
* * *
1671935 TGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
** * * ** * *
1672000 ATTTTAAAAAAATCTTGAACCAT-AAAAAGTTTCGAAACA-CATGAAAAATAAAAAATGAGTCAT
454 ATTTTAAAAAAATC-CCAAAC-TGAAAAAGTTTC-AAAAATTGTGAAAAATAGAAAACGAGTCAT
* * * *
1672063 CTTGCCATGAAACTTCAAATGAAGGCTTAAGGGACCACTGCATGAATTTACAAGCCATAAAAAAG
516 CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
1672128 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGCT
581 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
1672193 TGCACATCCCGCCTCTCTGGCCGACGTAGTGTCCTCCCACCTGCCCGTTTGTTTCGTCGGTTGGC
646 TGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
1672258 TTAGGCATACGGAGTTCATTGCCTGTCTAACATCAGACCAGATCGAAGGTTTTGGCAGCAAGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGAAGGTTTTGGCAGCAGGATC
* * * * * *
1672323 GGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCAGACTGA
775 GGTAGCACACTGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
*
1672388 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAATTCATT-CCAGTCTAA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
* * * * * *
1672446 GCATACGGAGTTCATTCCCTGTCTAAGATCGGACTGGATCGAGGGTTACGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTAGG
* * *
1672511 CTTGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGGGGAACCATCGTCGGAGTATCACCGGAG
66 CTTGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCATCGGAG
* * * * *
1672576 AACTTGATCGATGGCATTGGGGTTCCGATGATTGGGGGGCCGGGGGGGTGTGCGCCCATGATGTG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* ** * *
1672641 TGATGGATGCTTCTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCAAGAACTCAC
196 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
1672706 ACCCATTAAAGAGCATTTGAG-TTTCACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
261 ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
1672770 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTATG
326 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
* * * * *
1672835 CATGCCCACAAAAATACAAGGATCACATCTACCAAGTATGGGGCCAAATCTCCTTCTAAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
* *
1672900 TTTTAAAAAATCCCAAACTGAAAAAGGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTAAAAAAATCCCAAACTGAAAAA-GTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTG
* * *
1672965 CCTTGAAACTTCACATGAAAGCTTAAGGGACCATTCTATGAATTGT-CAAGCCATAAAAATGGCA
520 CCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT-TACAAGCCATAAAAATGGCA
* * * * * *
1673029 TTGGCATGGTAGAAATAAGAACATGTGCCTAAACCCACCTACCACCCTATTGATCTATGGCTTGC
584 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
1673094 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTA
649 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * *
1673159 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGG-GTTGCGACAGCAGGATCGG
714 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAAGGTTTTG-G-CAGCAGGATCGG
* * *
1673223 TAGCACACTGAGGGGGACCCGATCGATCCTCGACTTACGCATCTTGCCCCTCTGGCCGGCTGAGC
777 TAGCACACTGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* * *
1673288 GCCTGCATGCTCGTTTTGTGGGTTGAC-T-----TA-GG----------CA---T--
842 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
* * * * *
1673323 G----CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGGTGTACATGCTCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTAGG
* ** *** * ** *
1673384 CATGGGCATGTGCTGGTGCCACATTTTTTTCACCT-GGGGCACCATCGCCGGAGCATTGTCGAAG
66 CTTGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCATCGGAG
* * ** * **
1673448 AACCTGACCGGCAGCATTGGGGTTCCTCCGATTGGGGGGTCGGGAAGGTGTGCGCACATGATGTG
131 AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
1673513 CGATGGGTGCTGGTA-----CCCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACTCAA
196 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1673573 ACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
261 ACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1673638 GGGGACACTTCTTTCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTG
* * * *
1673703 TGCATGCCAACCAAAATACAAGGATCATGTCTACCACGTTTGGGGCCAAAACTCGTTCTGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * ** *
1673768 ATTTTAAAAAAATCTCGAACCAT-AAAAAGTTTTGAAAATTGTGAAAAATAGAGAACGAGTCATC
454 ATTTTAAAAAAATC-CCAAAC-TGAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATC
1673832 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
1673897 CATTGGCATGGTAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
1673962 GCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCCCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCT
647 GCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
1674027 TAGGCATACTGAGTTCATTCCCAGTGTAAGATCGGATC-GAACAGAGGGTTGCT-GCAGCAGGAT
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-AC-GAAGGTT-TTGGCAGCAGGAT
* * * * *
1674090 CGGTAGGACACTGTGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTG
774 CGGTAGCACACTGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * *
1674155 AACGCCCGCACGCTCATTTC-----ATGA-TT-----T---G-A--C-TT---AG-----
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
* * * *
1674189 GCAT-CGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATACTAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTAGG
* * *
1674253 CTTGGGCATGTGCTGGTGCCGCATTTTTTTTTTTGC-CTGGGGCACCATCGTCGGAACATCGTCG
66 CTTGGGCATGTGCTGGTGCCG--TATTTTTTTTTGCTC-GGGGCACCATCGTCGGAGCATCATCG
* * * * *
1674317 GAGAACCTGACCGACGGTATTGGGGTTCCGACGATTAGGGGGGCCAGGGGGCTGCGCACACATGA
128 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGGCCGGGGGGGTGTGCGCACATGA
* *
1674382 TGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
192 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1674447 TCACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGCCTG
257 TCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
1674512 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATGCACTTCGAGTTTTTAGCTGATTTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA-ATTT
*
1674577 TTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * * * *
1674642 AAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGAC
450 AAAAATTTTAAAAAAATCCCAAACTG-AAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTC
* * * * * *
1674707 GTCTTGCCATGAAACTTCACGTGAAGGTTTAAAGGACCATTGTATGAATTTAAAAACCATAAAAA
514 ATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
1674772 TGGCATTGGCATGGCGGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCATGG
579 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * **
1674837 CTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCACCCG-CCACCCGCTCATTTTATCGGTTG
644 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * * * * *
1674901 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGA-CTGTACCAAGGGTTGGGACAGTAGG
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACGAAGGTTTTGG-CAGCAGG
** ** * * * * * * * * *
1674965 ATCGACAGCATGCTGAGGGGGACTCGGTTGATCCTCGGCATGCGTATACTACCCCTCTGGCTGGT
772 ATCGGTAGCACACTGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGC
* * *
1675030 TGAACGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
1675092 G
1 G
1675093 ATCTGACCGA
Statistics
Matches: 3007, Mismatches: 433, Indels: 189
0.83 0.12 0.05
Matches are distributed among these distances:
863 1 0.00
865 5 0.00
866 2 0.00
867 44 0.01
868 16 0.01
869 167 0.06
870 402 0.13
871 21 0.01
872 140 0.05
873 118 0.04
876 6 0.00
877 134 0.04
878 424 0.14
879 4 0.00
882 5 0.00
883 2 0.00
887 145 0.05
888 559 0.19
889 19 0.01
890 12 0.00
891 16 0.01
892 4 0.00
893 11 0.00
894 3 0.00
895 5 0.00
896 6 0.00
897 21 0.01
898 534 0.18
899 28 0.01
900 64 0.02
901 1 0.00
903 9 0.00
904 79 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTAGG
CTTGGGCATGTGCTGGTGCCGTATTTTTTTTTGCTCGGGGCACCATCGTCGGAGCATCATCGGAG
AACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAAATCCCAAACTGAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGC
CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACGAAGGTTTTGGCAGCAGGATCGGTAGC
ACACTGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
Found at i:1674714 original size:878 final size:878
Alignment explanation
Indices: 1664775--1675112 Score: 11965
Period size: 901 Copynumber: 11.7 Consensus size: 878
1664765 ATCCCTCATC
*
1664775 AAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* *
1664840 GCTGAATTTTTTTGTGCATGCCAAGAAAAATACAA-GATCACGCCTACCAAGTTTGGGGCCAAAA
66 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
1664904 CTCCTTCTGAGAAAATTTTAAAAAAATCCCGAGCCGTAAAAAGTTTCAAAAATCATGAAAAATAG
131 CTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* *
1664969 AAAACAAGTCGTCTTGCCATGACACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
196 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
1665034 GTCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCC-AAA---A-C--CCA-CCTAT
261 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * ** * *
1665091 ---T--AAGGCTTGCGCATCCTGCCTTTTTGGCAGGCGTAGTGCCCGCCTACCCACCCGCTCATT
326 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * *
1665151 TCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTAGACC-GAACCGAGGGTTG
391 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACAGAGGGTTG
* * * * *
1665215 -TGGCAGCAGGATCGACAGCACGCTGAAGGGGACCCGACCGATCCACGGCTTGCACATCCT-ACC
456 CT-GCAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCC
* * * *
1665278 CTCTGGCTGGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTCA-GCAAACGGAGTTCATTC
520 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT-AGGCATACGGAGTTCATTC
* * * *
1665342 CCAGTCTAAGATCAGACCGGATCGATGGTTGCGGGTACACATGTTGGGCTCGGGCATGTGCTGGT
584 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT
* * * *
1665407 GCCG--TATTTTTTTTTGCTCGGGGTACCA---T-----CA-C--CGAAGAACCTGACCGACGGC
649 GCCGCATATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGC
* * *
1665459 ATTGGGGTTCCGGCGATTGGGGAGGCCGGGGGGTGTGCGCACATGATGTACGGTGGGTGCTGGTA
714 ATTGGGGTTCCGACGATTGGGG-GGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
*
1665524 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
778 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
*
1665589 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATT
843 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
1665625 AAAGTGTCTAAAATGTGAACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* * ** *
1665690 CCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAGTAAATTTGGGGCCAAAA
66 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
1665755 CTCCTTCTGAAAATA-TTTAAAAAATATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAACTA
131 CTCCTTCTGAAAAAATTTTAAAAAA-ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
1665819 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
195 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
** * * * *
1665884 AG-CATAAAAATGGCATTGGCACAGCAAAAATATGAAGATATGGCTAAACCCACCTACCACCCAA
260 AGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* *
1665948 TCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGT
325 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGT
* * * * * * *
1666013 TTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGGTTAGATC-GGACTGAAGGTT
390 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACAGAGGGTT
* * * * * *
1666077 GCTGCAGCAGGATCTG-CAGCAC-GTAAAGGGGGACCCGGCCAATCCCCGACTTGCGCATCCTAC
455 GCTGCAGCAGGATC-GACAGCACACT-GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGC
**
1666140 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCAATTCGTGGGTTGACTTAGGCATATAGAGTTCATT
518 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG----A--C-T-TAG-G--CA-T
* * * * *
1666205 CCCAATCGAAGCATATGAAGTTCATTCCCAGTCTAAGAGCGGATCGGCCCGAGGGTTCCGGGTGC
571 ----A-C---G-----G-AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGC
* * * * * **
1666270 ACATGCTAGGCTCGGGCATGTACTGGTG-C-CACA-TTTTTTTTGCCCGGGCCACAATCACCGGA
622 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTTTTTTTTGCCCGGGGCACCATCGTCGGA
* * * *
1666332 GCATCGCCGGAGTACCTGACCGGCGGCATTGTGGTTCCGGCGATTGAGGGGGCCGGGGGGTGTGC
687 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTG-GGGGGCCGGGGGGTGTGC
* * *
1666397 GCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCGAACC
751 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
1666462 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATT
816 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
1666525 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* * *
1666590 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTCCCAAGTTTGGGGCCAAAA
66 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* ** *
1666655 CTCCTTCTGAAAAAACTTTAAAAAAATCTTGAACCGTAAAAATTTTCAAAAAT-AGTGAAAAATA
131 CTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATA
*
1666719 AAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
195 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
1666784 AGCCAT-AAAATCTGCATTGGCATGGTAGAAATATGAAGATGTGCCGAAACCCGCCTACCACCCT
260 AGCCATAAAAAT-GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* *
1666848 ATCGATCCACGGCTTGCGCATCCCGCCTCTCTAGG-TGGCGTAGT----GCCCGCCCGCCCACTC
324 ATCGATCCACGGCTTGCGCATCCCGCCTCTCT-GGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTC
* * * * * *
1666908 GTTTCGTTGGTTGGCTTAGGCGTACCGAGTTCATTCCTAGTCTAAGATCAGATCAGATC-GAGGG
388 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACAGAGGG
* * * * * * *
1666972 TTG-TGGCAGCAGGATCGGCAGCACGCAGAGAGGGACCCGATCGATCTCCGGCTTGCGCAACCTG
453 TTGCT-GCAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTG
* * * * *
1667036 CCCCTCTGGCCGACTGAGTGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTTAT
517 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* *
1667101 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCTCGTGCATGTGCTG
582 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * *
1667166 ATGTCG--TATTTTTTTTTCCCCGGGCCACCATCGCCGAAGCATCGTCGGAGAACCTGACCGGCG
647 GTGCCGCATATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCG
*
1667229 GCATTGGGGTTTCGGA-GATTGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
712 GCATTGGGG-TTCCGACGATT-GGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
1667293 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCATAAA
774 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
1667358 GAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATT
839 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* **
1667398 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGACCACAAAATCCTGTACACTTCGAGTTTTTA
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
*
1667463 GCTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
66 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
1667528 ATACTTCTGAAAAAAGTTTT-ATAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
131 CTCCTTCTGAAAAAA-TTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
*
1667592 AAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
195 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
** * *
1667657 AGCCATAAAAATGGCATTGGCACAGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTA
260 AGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * *
1667722 TCAATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCCGCTCGT
325 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGT
* * * * * *
1667787 TTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTTTAAGATCGGATCAG-ACTA-AGGGA
390 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAAC-AGAGGGT
** * * *
1667850 TGAGGCAGCAGGATCGACAGCACTCGGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTACC
454 TGCTGCAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCC
*
1667915 CCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTC
519 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-G-G-------
* * *
1667980 CTAGTCTAAGCATACGGATTTCATTCTCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGGTGCA
575 --AG--T-----T-C--A-TTC---C-CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCA
* * * * * *
1668045 CATGCTGGGCTTGGGCATGTGATGGTGTCGCA-A-TTTTTTTCGCCCGGGGCACCATTG-CTGAA
623 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTTTTTTTTGCCCGGGGCACCATCGTC-GGA
* *
1668107 GCATCATCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCG
687 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCG
* * *
1668172 CACATGATGTGCAATGGGTGCTGGTACTTGGCCCGTATATT-GCTCCCATATCCCTCATCAAACC
752 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC-CCCCTATCCCTCATCAAACC
* * *
1668236 TCAAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTT
816 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
1668299 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* * * *
1668364 GCTGAATGTTTTTGGGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCAAAAA
66 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* *
1668429 CTCCTTCTGAAAAAATTTTAAAAAAA-CACCGAACCGTAAAAAGTTTCAAAAATCTTGAAATATA
131 CTCCTTCTGAAAAAATTTTAAAAAAATC-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* * *
1668493 GAAAACAAGTTGTCTTGCCATAAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
195 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
1668558 AGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGCTGTGCCTCAACCCACCTACCACCCTA
260 AGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * *
1668623 TCGATCCACAGCTTGCGCATCCCACCTCTCTAGCCGGCGTAGTGCCCACCCGCCCGCCCGTTCGT
325 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGT
* * * * *
1668688 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGGTCAGACCGGATC-GACGGTT
390 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACAGAGGGTT
* * * * * * * *
1668752 -ATGGCCGCAAGATCGGCAGCAC-GTAGAGGGGGACCCGATCGAAT-CCCGACTTGCGTATCCTG
455 GCT-GCAGCAGGATCGACAGCACACT-GAGGGGGACCCGACCG-ATCCCCGGCTTGCGCATCCTG
* * *
1668814 CCCCTCTGGCCGGCTGAGCGCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATATGGAGTTCAT
517 CCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
*
1668879 TCCCAGTCTAAGCATACGGAGTTTATTCCCAGTCTAAGGTCGAACTGGACCGAGGGTTGCGAGTG
582 TCCCAG--T---C-TA---AG---A-T--CAG----A---C---C-GGACCGAGGGTTGCGGGTG
* * * *
1668944 CACATGCTGGGCTCAGGCATGTGCTGGTG-C-CATATTTTTTTTCGCCCGGGCCACCATCGCCGG
621 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTTTTTTTTGCCCGGGGCACCATCGTCGG
* * * * * *
1669007 AGCATCGTCGGAGAACCTAACAGGCGGCATTGGGGTTTCGGCGATTGGAGAGGGTCGCAGGGGTG
686 AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGG-G-GGGCCG-GGGGGTG
* ** * *
1669072 TGCACACATGATGTGCGATGGGCACTAGTACTTCGCCCTTATATTGGCCCCCTA-CCCTCATCAA
748 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * *
1669136 ACCTTGAGAAGTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAT
813 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
1669201 T
878 T
* * *
1669202 AAAGTGTCTGAAATGTGGAGACTTTTTTCAAATGGTCACAAAATCCTGTATACTTCGAGTTTTTA
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* * * *
1669267 GCTGAATTTTTTTTTTTTTGCATGCCAAAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCC
66 GCTGAA----TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC
* * * * * *
1669332 AAAGCTCCTTCTGAAAAAATTTTTAAAAAATCCCAAATCGTAACAAGTTTCAAAAATCGTGAAAA
127 AAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAA
*
1669397 ATAGAAAACGGGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
192 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* *
1669462 ACAAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACA
257 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * **
1669527 CTATTGATCCACGGCTTGCGCATCTCGCCTCTCTGGCAGGCATAGTGTCCGCCCACCCGCTTGCT
322 CTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCT
** * * * *
1669592 CGTTT-GTCGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAG-GCTGAACC-GCACCGAG
387 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGAACAGAG
* * * * * * * * * **
1669654 TGTTGCGGTAGTAGGATCGATAGCAC-GTAGAGGGGGACCTGGCTGATCCCTAGCTTGCGCATCC
451 GGTTGCTGCAGCAGGATCGACAGCACACT-GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * **
1669718 TGCCCCTCTGGCCGGCTGAGCGCCTGCACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTC
515 TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** * *
1669783 ATTCCCAGTCTAAGCAT-ATG-CTGGTGCATATGGGTTTTATTGGTTGTGGGTGCACATGCTGGG
580 ATTCCCAGTCTAAG-ATCA-GAC-CG-G---A-CCG----A-GGGTTGCGGGTGCACATGCTGGG
* * * **
1669846 CTCAGGCATATGCTGGTG-C-CACATTTTTTTTCACCCGGGGCACCATCG-C----CA------G
632 CTCGGGCATGTGCTGGTGCCGCATATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGTCGG
* **
1669898 AGAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGTGGGGGGGGAGGGGTGTGCGCACA
697 AGAACCTGACCGGCGGCATTGGGGTTCCGACGATT----GG-GGGGCCGG-GGGGTGTGCGCACA
* *
1669963 TGATGTGCGATGGGTGATGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAG
756 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
1670028 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCCTT
821 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* ** *
1670086 AAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCCTACACACTTTGAGTTTTTA
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* * * **
1670151 GCTAAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACATCCCCCAAGTTTGGGGCCAAAA
66 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * *
1670216 CTCCTTCTTAAAAATATTTT-AAAAAATCCTGAACCGTAAAAAGTTTTAAAAATTATGAAAAATA
131 CTCCTTCTGAAAAA-ATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATA
* * * * *
1670280 GAAAACGAGTCGTCTTTCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGCAAGAATTTAAA
195 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
1670345 AGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTA
260 AGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * *
1670410 TCGATCGACGGCTTGTGCGTCCCGTCTCTCGGGCCGACGTAGTGGTCGCCCACCCGCCCGCCCGC
325 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA---GT-GCCCGCCCGCCCGCCCGC
* * * *
1670475 TCGTTTCGTCGGTTGGCTTGGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATCAG-ACCGAG
386 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACAGAG
** * * * * *
1670539 GGTTATTGTAGCAGGATTGAAAGCACA-TAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCC
451 GGTTGCTGCAGCAGGATCGACAGCACACT-GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * * *
1670603 TACCCCTCTAGTCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTC
515 TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* ** * *
1670668 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTAGGTGCACATGCTGGGCTCGAGAATGTGC
580 ATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGC
* * ** * ** *
1670733 TGGTG-C-CATAATTTTTTTCT-CTCTAGGCACCATCGTTGGAGCATTATCGGAGAACCTGACCA
645 TGGTGCCGCAT-ATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * ** * *
1670795 TCAAAGCATTAAGGTT-CTAGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGG
709 GC--GGCATTGGGGTTCCGA-CGATT-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
* * * *
1670859 GTGCTCGTACTTGGCCATTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCAC
769 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
1670924 ATAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
834 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* ** * * *
1670969 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGACCACAAAATCCTATACACTTCGAGTCTTTG
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
*
1671034 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCTACCAAGTTT-GGGCCAAAA
66 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * * *
1671098 ATCCTTCTGAAAAAATTTGAAAAAAATACCGAACTGAAAAAAGTTTCAAAAATCATGAAAATTAG
131 CTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* *
1671163 AAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAA
196 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
1671228 GCCATAAAAATGGCATTGGCATGGCATAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTAT
261 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * ** *
1671293 TGAAT-CACGGCTTTCGTATCCCGCCTCTCTGGCCGGTTTAGTGCCCGCCCCCCCGCCCGCTCGT
326 CG-ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGT
* * * *
1671357 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACTGAGGG-T
390 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACAGAGGGTT
* * * ** ** ** * *
1671420 -CATGGTAGTAGGATCGATAGCACACAAAGGGGGACCCGGTCGATCCTTGACTTGCGCATCTTGC
455 GC-T-GCAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGC
* *
1671484 CCTTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAATTCATT
518 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC-T-----TA-GG----CA-T
* * *
1671549 CCCAATCTAAGCATAAAGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACAGGTGC
571 ----A-C---G------GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGC
* * * * *** * *
1671614 ACAAGATAGCCTCGGGCATACACTGGTGTCG--TATTTTTTTTCGCCCGGGGCACCATCGT----
622 ACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTTTTTTTTGCCCGGGGCACCATCGTCGGA
* ** *
1671673 -CA-----GG-GAACCTGACCGGTGGCATTGGGGTTCCGACGATTATGGGG-CGGGGGGTGTGTG
687 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCG
* * * *
1671730 GACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCCTCAAACCT
752 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
1671795 CGAGAATTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
817 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
1671857 AAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTA
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
*
1671922 GCTGAATTTTTTT-TGCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
66 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * ** * *
1671986 ATCCTTCTAAAAAAATTTTAAAAAAATCTTGAACCATAAAAAGTTTCGAAACA-CATGAAAAATA
131 CTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTC-AAAAATCATGAAAAATA
* * * * * *
1672050 AAAAATGAGTCATCTTGCCATGAAACTTCAAATGAAGGCTTAAGGGACCACTGCATGAATTTACA
195 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
1672115 AGCCATAAAAAAGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
260 AGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * * * * *
1672180 TCAATCCACAGCTTGCACATCCCGCCTCTCTGGCCGACGTAGTGTCCTCCCACCTGCCCGTTTGT
325 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGT
* * * * *
1672245 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTGCCTGTCTAACATCAGACCAGATC-GAAGGTT
390 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACAGAGGGTT
* * * * * *
1672309 -TTGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCC
455 GCT-GCAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCC
* * * *
1672373 CCTCTGGCAGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAATTCATT-
519 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
1672437 CCAGTCTAAGCATACGGAGTTCATTCCCTGTCTAAGATCGGACTGGATCGAGGGTTACGGGTGCA
584 CCAGTCTAAG-AT-C--AG---A--------C------CGGAC-----CGAGGGTTGCGGGTGCA
* * *
1672502 CATGCTGGGCTTGGGCATGTGCTGGTGCCG--TATTTTTTTTTGCTCGGGGAACCATCGTCGGAG
623 CATGCTGGGCTCGGGCATGTGCTGGTGCCGCATATTTTTTTTTGCCCGGGGCACCATCGTCGGAG
* ** * * ** *
1672565 TATCACCGGAGAACTTGATCGATGGCATTGGGGTTCCGATGATTGGGGGGCCGGGGGGGTGTGCG
688 CATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGCC-GGGGGGTGTGCG
* * * ** *
1672630 CCCATGATGTGTGATGGATGCTTCTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCT
752 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * *
1672695 CAAGAACTCACA-CCCATTAAAGAGCATTTGAG-TTTCACAGGTTTGCTACCAGTAGCCATT
817 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
1672755 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* * * * *
1672820 GCTGAA-TTTTTTATGCATGCCCACAAAAATACAAGGATCACATCTACCAAGTATGGGGCCAAAT
66 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * **
1672884 CTCCTTCTAAAAAAATTTTTAAAAAATCCCAAACTG-AAAAAGGTTTCAAAAATTGTGAAAAATA
131 CTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAA-GTTTCAAAAATCATGAAAAATA
* * *
1672948 GAAAACGAGTCGTCTTGCCTTGAAACTTCACATGAAAGCTTAAGGGACCATTCTATGAATTGT-C
195 GAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATT-TAC
* * *
1673012 AAGCCATAAAAATGGCATTGGCATGGTAGAAATAAGAACATGTGCCTAAACCCACCTACCACCCT
259 AAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
1673077 ATTGATCTATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCG
324 ATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCG
* * *
1673142 TTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA-AGGGT
389 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACAGAGGGT
** * * * * *
1673206 TGC-GACAGCAGGATCGGTAGCACACTGAGGGGGACCCGATCGATCCTCGACTTACGCATCTTGC
454 TGCTG-CAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGC
* * * *
1673270 CCCTCTGGCCGGCTGAGCGCCTGCATGCTCGTTTTGTGGGTTGACTTAGGCATGCGGAGTTCATT
518 CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
* * * * *
1673335 CCCAGTCTAAGATCAGACCAGACCAAGGGTTGTGGGTGTACATGCTCGGCAT-GGGCATGTGCTG
583 CCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGC-TCGGGCATGTGCTG
* ** * * * * *
1673399 GTG-C-CACA-TTTTTTTCACCTGGGGCACCATCGCCGGAGCATTGTCGAAGAACCTGACCGGCA
647 GTGCCGCATATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCG
** * *
1673461 GCATTGGGGTTCCTCCGATTGGGGGGTCGGGAAGGTGTGCGCACATGATGTGCGATGGGTGCTGG
712 GCATTGGGGTTCCGACGATTGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * *
1673526 TA-----CCCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACTCAAACCCGCTTAAAGA
776 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
1673586 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
841 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
1673624 AAAGTGTTTGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTA
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* * *
1673689 GCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGGATCATGTCTACCACGTTTGGGGCCAAAA
66 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * ** **
1673754 CTCGTTCTGAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTTGAAAATTGTGAAAAATAG
131 CTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* *
1673819 AGAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
196 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
1673884 GCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTAT
261 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
1673949 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCCCCCGCCCGCCCGCTCGTT
326 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* * * * *
1674014 TTGTCGGTTGGCTTAGGCATACTGAGTTCATTCCCAGTGTAAGATCGGATC-GAACAGAGGGTTG
391 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACAGAGGGTTG
** * *
1674078 CTGCAGCAGGATCGGTAGGACACTGTGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCC
456 CTGCAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCC
* * * * ** *
1674143 TCTGGCCGACTGAACGCCCGCACGCTCATTTCATGATTTGACTTAGGCAT-CGGAGTTCATTCCT
521 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * *
1674207 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATACTAGACTTGGGCATGTGCTGGTGC
586 AGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* * * * *
1674272 CGCATTTTTTTTTTTGCCTGGGGCACCATCGTCGGAACATCGTCGGAGAACCTGACCGACGGTAT
651 CGCATATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
* * * * *
1674337 TGGGGTTCCGACGATTAGGGGGGCCAGGGGGCTGCGCACACATGATGTGTGATGGCTGCTGGTAC
716 TGGGGTTCCGACGATT-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* *
1674402 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAATAGCA
779 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
1674467 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
844 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * * *
1674502 AAAATGCCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATGCACTTCGAGTTTTTA
1 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* *
1674567 GCTGATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
66 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * **
1674632 CTCCTTCTGAAAAAATTTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAG
131 CTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
* * * * *
1674697 AAAACGAGACGTCTTGCCATGAAACTTCACGTGAAGGTTTAAAGGACCATTGTATGAATTTAAAA
196 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
1674762 ACCATAAAAATGGCATTGGCATGGCGGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTAT
261 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * * * *
1674827 CGATGCATGGCTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCACCCG-CCACCCGCTCATT
326 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
** * ** * *
1674891 TTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGA-CTGTACCA-AGGGTT
391 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-AACAGAGGGTT
* * ** * *** * * * * *
1674954 G-GGACAGTAGGATCGACAGCATGCTGAGGGGGACTCGGTTGATCCTCGGCATGCGTATACTACC
455 GCTG-CAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCC
* * * *
1675018 CCTCTGGCTGGTTGAACGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTC
519 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* *
1675083 CCAGTCTAAGATCTGACCGAACCGAGGGTT
584 CCAGTCTAAGATCAGACCGGACCGAGGGTT
1675113 ACGGTAGCAG
Statistics
Matches: 8124, Mismatches: 1040, Indels: 620
0.83 0.11 0.06
Matches are distributed among these distances:
850 139 0.02
851 143 0.02
854 1 0.00
855 1 0.00
857 3 0.00
858 4 0.00
861 11 0.00
862 11 0.00
863 153 0.02
864 40 0.00
865 1 0.00
867 41 0.01
868 21 0.00
869 167 0.02
870 429 0.05
871 81 0.01
872 228 0.03
873 540 0.07
874 63 0.01
875 14 0.00
876 6 0.00
877 332 0.04
878 643 0.08
879 9 0.00
880 289 0.04
881 16 0.00
882 214 0.03
883 299 0.04
884 171 0.02
885 182 0.02
886 9 0.00
887 119 0.01
888 565 0.07
889 35 0.00
890 78 0.01
891 80 0.01
892 5 0.00
893 11 0.00
894 5 0.00
895 5 0.00
896 2 0.00
897 178 0.02
898 553 0.07
899 40 0.00
900 494 0.06
901 830 0.10
902 23 0.00
903 269 0.03
904 128 0.02
905 9 0.00
906 152 0.02
907 281 0.03
908 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
CTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAACAGAGGGTTG
CTGCAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCC
TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGC
CGCATATTTTTTTTTGCCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCAT
TGGGGTTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
Found at i:1675183 original size:159 final size:160
Alignment explanation
Indices: 1674883--1675254 Score: 405
Period size: 159 Copynumber: 2.3 Consensus size: 160
1674873 ACCCGCCACC
* * * * * *
1674883 CGCTCATTTTATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGAT-TGGACTGTACC
1 CGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGAACC
* * ** * **
1674947 AAGGGTTGGGACAGTAGGATCGACAGCATGCTGAGGGGGACTCGGTTGATCCTCGGCATGCGTAT
66 AAGGGTTCGGACAGCAGGATCGACAGCACACTGAGGGGAACTCGGCCGATCCTCGGCATGCGTAT
* *
1675012 ACTACCCCTCTGG-CTGGTTGAACGCCCGCA
131 ACTACCCCTCTGGTC-GGCTGAACACCCGCA
*
1675042 CGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCT-GACCGAACC
1 CGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGAACC
* * * * * *
1675106 GAGGGTTACGG-TAGCAGGATTGGCAGCACACTGAGGGGAACTTGGCCGATCC-CTGGCTTGCGT
66 AAGGGTT-CGGACAGCAGGATCGACAGCACACTGAGGGGAACTCGGCCGATCCTC-GGCATGCGT
* ** *
1675169 AT-CGTGCCTTTCTGGTCGGCTGAGCACCCGCA
129 ATAC-TACCCCTCTGGTCGGCTGAACACCCGCA
* * *
1675201 CGCTTATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAGGATC
1 CGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1675255 AAACAGGATC
Statistics
Matches: 178, Mismatches: 30, Indels: 10
0.82 0.14 0.05
Matches are distributed among these distances:
158 2 0.01
159 172 0.97
160 4 0.02
ACGTcount: A:0.19, C:0.24, G:0.29, T:0.27
Consensus pattern (160 bp):
CGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGGACCGAACC
AAGGGTTCGGACAGCAGGATCGACAGCACACTGAGGGGAACTCGGCCGATCCTCGGCATGCGTAT
ACTACCCCTCTGGTCGGCTGAACACCCGCA
Found at i:1675277 original size:878 final size:872
Alignment explanation
Indices: 1669099--1675116 Score: 4424
Period size: 878 Copynumber: 6.8 Consensus size: 872
1669089 ATGGGCACTA
* * * *
1669099 GTACTTCGCCCTTATATTGGCCCCCTA-CCCTCATCAAACCTTGAGAAGTCACACCCCTTTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAAACCCCCTTAAAG
* * * * * *
1669163 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGTGGAGACTTTT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGCCTGAAATGGGGACACTTCT
* * * *
1669228 TTCAAATGGTCACAAAATCCTGTATACTTCGAGTTTTTAGCTGAATTTTTTTTTTTTTGCATGCC
131 TTCAAATGGTCACAAAATCCTATACACTTAGAGTTTTTAGCTGAA----TTTTTTTGTGCATGCC
* * * *
1669293 AAAAAAAATTCAAGGATCATGTCTACCAAGTTTGGGGCCAAAGCTCCTTCTGAAAAAATTTTTAA
192 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * * * * * * *
1669358 AAAATCCCAAATCGTAACAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGA
257 AAAATCTCGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGACATCTTGCCATGA
* * *
1669423 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
322 AACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAACCATAAAAATGGCATTGGCAT
* * * * * *
1669488 GGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACACTATTGATCCACGGCTTGCGCATCTC
387 GGCAGAAATATAAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * * ** * * **
1669553 GCCTCTCTGGCAGGCATAGTGTCCGCCCACCCGCTTGCTC-GTTTGTCGGTTGAATTAGGCATAC
452 GCCTCTCTGGCCGACGTAGTGCCCACCCGCCCACCCGCTCATTTTATCGGTTGGCTTAGGCATAC
* * * * * * * * * *
1669617 GGAGTTCATTCCCAGTCTAAG-GCTGAACCGCACCGAGTGTTGCGGTAGTAGGATCGATAGCAC-
517 GGAGTTCATTCCCAATCTAAGATC-GGATCGAACAGAGGGTTGCGGCAGCAGGATCGACAGCACA
* * * * ** * * * * * *
1669680 GTAGAGGGGGACCTGGCTGATCCCTAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCTGC
581 CT-GAGGGGGACCCGACCGATCCCCGGCATGCGCATACTACCCCTCTGGCCGACTGAACGCCCGC
* * * **
1669745 ACGCTCATTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGCTGGTGC
645 ACGCTCATTTCATGAGTTGACTTAGGCAT-CGGAGTTCATTCCCAGTCTAAG---AT-C-AGACC
* ** * ** * * * * * * * *
1669810 ATATGGGTTTTATTGGTTGTGGGTGCACATGCTGGGCTCAGGCA-TATGCTGGTGCCACATT---
704 AGA-CCG----A-GGGTTACGGGTGCACATACTAGAC-CTGGGAGGA-ACTGGTGCCGCATTCCC
** * * * * ** *
1669871 T-TTTTTCACCCGGGGCACCA---TC-G--C--CAGAGAACCTGACCGGTGGCATTGGGGTTCCG
761 TGGCTTGCA-TC-GGGCACCATCGTCGGATCGGCGGAGAACCCGACCGACGGTATTGGGGTT-CG
** * ***** * * ** * *
1669927 ACGATTGGGGGGTGGGGGGGGAGGGGTGTGCGCACATGATGTGCGATGGG-TGATG
823 ACGATT--ACGG-AGGCCACCA-GGCTGCGCAAACAGGA-GTGCGA-GGGCTGCTG
* * *
1669982 GTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAAACCCCCTTAAAG
* * * *
1670047 AGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAATGGGGACACATT-
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGCCTGAAATGGGGACAC-TTC
* * * *
1670111 TTTCAAATGGTCACAAAATCCTACACACTTTGAGTTTTTAGCTAAATTTTTTTGTGCAAGCCAAC
130 TTTCAAATGGTCACAAAATCCTATACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
** ** *
1670176 AAAAATACAAGGATCACATCCCCCAAGTTTGGGGCCAAAACTCCTTCTTAAAAATATTTT-AAAA
195 AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA-ATTTTAAAAA
* * * * * *
1670240 AATC-CTGAACCGTAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTCTTTCCATGAA
259 AATCTC-GAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGACATCTTGCCATGAA
* * *
1670304 ACTTCACATGAAGGCTTAAAGGACCATTGCAAGAATTTAAAAGCCATAAAAATGGCATTGGCATG
323 ACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAACCATAAAAATGGCATTGGCATG
* * * * * * *
1670369 GCAAAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCGACGGCTTGTGCGTCCCG
388 GCAGAAATATAAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * ** *
1670434 TCTCTCGGGCCGACGTAGTGGTCGCCCACCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTGGGCA
453 CCTCTCTGGCCGACGTA---GT-GCCCACCCGCCCACCCGCTCATTTTATCGGTTGGCTTAGGCA
* ** * *** * * *
1670499 TACGGAGTTCATTCCCAGTCTAAGATCAAATC-AGACCGAGGGTTATTGTAGCAGGATTGAAAGC
514 TACGGAGTTCATTCCCAATCTAAGATCGGATCGA-ACAGAGGGTTGCGGCAGCAGGATCGACAGC
* * * * * * * **
1670563 ACA-TAGAGGGGGACCCGATCGATCCTCGGCTTGCGCATCCTACCCCTCTAGTCGGCTGAGTGCC
578 ACACT-GAGGGGGACCCGACCGATCCCCGGCATGCGCATACTACCCCTCTGGCCGACTGAACGCC
* * * * * *
1670627 CGCACGCTCGTTTCGTGGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGG
642 CGCACGCTCATTTCATGAGTTGACTTAGGCAT-CGGAGTTCATTCCCAGTCTAAGATCAGACCAG
*** * ** * * ** ** ** **
1670692 ACCGAGGGTTGTAGGTGCACATGCT-GGGCTCGAGAATGTGCTGGTGCCATAATT-TTTTTC-T-
706 ACCGAGGGTTACGGGTGCACATACTAGACCT-G-GGAGGAACTGGTGCC-GCATTCCCTGGCTTG
* * *** * * * ** *
1670753 C-TCTAGGCACCATCGTTGGAGCATTATCGGAGAACCTGACC-ATCAAAGCATTAAGGTTCTAGC
768 CATC-GGGCACCATCG-TCG-G-ATCGGCGGAGAACCCGACCGA-C--GGTATTGGGGTTCGA-C
** * **** * * ** * * *
1670816 GATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG-TGCTC
825 GATTACGGAGGCCACCAGGCTGCGCAAACAGGA-GTGCGA-GGGCTGCTG
* * * * * * *
1670865 GTACTTGGCCATTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACATAAAA
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAAACCCCCTTAAAG
* * * *
1670930 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGCCTGAAATGGGGACACTTCT
** * * *
1670995 TTCAAATGACCACAAAATCCTATACACTTCGAGTCTTTGGCTGAATTTTTTTGTGCATGCCAACA
131 TTCAAATGGTCACAAAATCCTATACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
1671060 AAAATACAGGGATCACGTCTACCAAGTTT-GGGCCAAAAATCCTTCTGAAAAAATTTGAAAAAAA
196 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* ** * *
1671124 TAC-CGAACTGA-AAAAAGTTTCAAAAATCATGAAAATTAGAAAACGAGTCATCTTGCCATGAAA
261 T-CTCGAAC-CATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGACATCTTGCCATGAAA
* * * *
1671187 CTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGG
324 CTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAACCATAAAAATGGCATTGGCATGG
* * * * * * *
1671252 CATAAATATGAAGAGGTGCCTAAACCCACCTACCACCCTATTGAAT-CACGGCTTTCGTATCCCG
389 CAGAAATATAAAGATGTGACTAAACCCACCTACCACCCTATCG-ATCCACGGCTTGCGCATCCCG
*** * * * * **
1671316 CCTCTCTGGCCGGTTTAGTGCCCGCCCCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
453 CCTCTCTGGCCGACGTAGTGCCCACCCGCCCACCCGCTCATTTTATCGGTTGGCTTAGGCATACG
* * * * *** * * *
1671381 GAGTTCATTCCCAGTCTAAGATC-GAACTGGACTGAGGGTCATGGTAGTAGGATCGATAGCACAC
518 GAGTTCATTCCCAATCTAAGATCGGATC-GAACAGAGGGTTGCGGCAGCAGGATCGACAGCACAC
** ** ** * * * * ** *
1671445 AAAGGGGGACCCGGTCGATCCTTGACTTGCGCAT-CTTGCCCTTCTGGCCGGTTGAGCGCCCGCA
582 TGAGGGGGACCCGACCGATCCCCGGCATGCGCATAC-TACCCCTCTGGCCGACTGAACGCCCGCA
* * *
1671509 CGCTCGTTTCGTGGGTTGACTTAGGAATACGGAATTCATTCCCAATCTAAGCATAAAGAGTTCAT
646 CGCTCATTTCATGAGTTGAC-T-----TA-GG----------C-ATC---G------GAGTTCAT
* * * * *
1671574 TCCCAGTCTAAGATCAAACCGGACCGAGGGTTACAGGTGCACA-AGATAG-CCTCGGGCA-TACA
684 TCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGGTGCACATA-CTAGACCT-GGG-AGGA-A
* * *** * * *
1671636 CTGGTGTCGTATT---TTTTTTCGC-CCGGGGCACCATCGTC--A-----GG-GAACCTGACCGG
745 CTGGTGCCGCATTCCCTGGCTT-GCATC-GGGCACCATCGTCGGATCGGCGGAGAACCCGACCGA
* * * *** * * *** * *
1671689 TGGCATTGGGGTTCCGACGATTATGG-GG-C-GGGGGGTGTGTGGACATGATGTGCAATGGG-TG
808 CGGTATTGGGGTT-CGACGATTACGGAGGCCACCAGGCTGCGCAAACAGGA-GTGCGA-GGGCTG
1671750 CTG
870 CTG
* * * * * *
1671753 GTACTTGGCCCTTATATTGGCCCCTTATCCCTCCTCAAACCTCGAGAATTTACACCCCCTTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAAACCCCCTTAAAG
* * * *
1671818 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGCCTGAAATGGGGACACTTCT
* *
1671883 TTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTT-TGCATGCCAACA
131 TTCAAATGGTCACAAAATCCTATACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * *
1671947 AAAATATAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTTTAAAAAAA
196 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* * ** * * *
1672012 TCTTGAACCATAAAAAGTTTCGAAACA-CATGAAAAATAAAAAATGAGTCATCTTGCCATGAAAC
261 TCTCGAACCATAAAAAGTTTC-AAAAATTGTGAAAAATAGAAAACGAGACATCTTGCCATGAAAC
* * * * * * *
1672076 TTCAAATGAAGGCTTAAGGGACCACTGCATGAATTTACAAGCCATAAAAAAGGCATTGGCATGGC
325 TTCACATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAACCATAAAAATGGCATTGGCATGGC
* * * * *
1672141 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACAGCTTGCACATCCCGCC
390 AGAAATATAAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* * * ** * ** **
1672206 TCTCTGGCCGACGTAGTGTCCTCCCACCTGCCCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGA
455 TCTCTGGCCGACGTAGTGCCCACCCGCCCACCCGCTCATTTTATCGGTTGGCTTAGGCATACGGA
* ** * * * * * ** * * * *
1672271 GTTCATTGCCTGTCTAACATCAGACCAGATC-GAAGGTTTTGGCAGCAAGATCGGCAGCACGCAG
520 GTTCATTCCCAATCTAAGATCGGATC-GAACAGAGGGTTGCGGCAGCAGGATCGACAGCACACTG
* * * * * *
1672335 AGGGGGACCCGACCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGCAGACTGAGCGCCCGCACGC
584 AGGGGGACCCGACCGATCCCCGGCATGCGCATACTACCCCTCTGGCCGACTGAACGCCCGCACGC
* * * * *
1672400 TCGTTTCGTGGGTTGACTTAGGCATACAGAATTCATT-CCAGTCTAAGCATACGGAGTTCATTCC
649 TCATTTCATGAGTTGACTTAGGCAT-CGGAGTTCATTCCCAGTCTAAG-AT-C--AG---A----
* * * * * **
1672464 CTGTCTAAGATCGGACTGGATCGAGGGTTACGGGTGCACATGCTGGGCTTGGGCATGTGCTGGTG
702 C---C----A---GAC-----CGAGGGTTACGGGTGCACATACTAGACCTGGG-AGGAACTGGTG
* * *** * ** ** * * *
1672529 CCGTATT--TTTTTTTGC-TCGGGGAACCATCGTCGGAGTATCACCGGAGAACTTGATCGATGGC
751 CCGCATTCCCTGGCTTGCATC-GGGCACCATCGTC-G-G-ATCGGCGGAGAACCCGACCGACGGT
* * * **** * * *** * * * * *
1672591 ATTGGGGTTCCGATGATT-GGGGGGCCGGGGGGGTGTGCGCCCATGATGTGTGATGGATGCTT
812 ATTGGGGTT-CGACGATTACGGAGGCCACCAGGCTGCGCAAACAGGA-GTGCGAGGGCTGCTG
* * ** * *
1672653 CTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTCAAGAACTCACA-CCCATTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAAACCCCCTTAAAG
* * * * * *
1672717 AGCATTTGAG-TTTCACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGCCTGAAATGGGGACACTTCT
* * * *
1672781 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCCACA
131 TTCAAATGGTCACAAAATCCTATACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
** * * * *
1672845 AAAATACAAGGATCACATCTACCAAGTATGGGGCCAAATCTCCTTCTAAAAAAATTTTTAAAAAA
196 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* * * * *
1672910 TC-CCAAAC-TGAAAAAGGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAA
261 TCTCGAACCAT-AAAAA-GTTTCAAAAATTGTGAAAAATAGAAAACGAGACATCTTGCCATGAAA
* * * * *
1672973 CTTCACATGAAAGCTTAAGGGACCATTCTATGAATTGT-CAAGCCATAAAAATGGCATTGGCATG
324 CTTCACATGAAGGCTTAAAGGACCATTGTATGAATT-TAAAAACCATAAAAATGGCATTGGCATG
* * * * * *
1673037 GTAGAAATA-AGAACATGTGCCTAAACCCACCTACCACCCTATTGATCTATGGCTTGCGCATCCC
388 GCAGAAATATA-AAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * *
1673101 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATAC
452 GCCTCTCTGGCCGACGTAGTGCCCACCCGCCCACCCGCTCATTTTATCGGTTGGCTTAGGCATAC
* * * * * * **
1673166 AGAGTTCATTCCCAGTCTAAGATCAGACCAGACCA-AGGGTTGCGACAGCAGGATCGGTAGCACA
517 GGAGTTCATTCCCAATCTAAGATCGGATC-GAACAGAGGGTTGCGGCAGCAGGATCGACAGCACA
* * * * * * * * *
1673230 CTGAGGGGGACCCGATCGATCCTCGACTTACGCAT-CTTGCCCCTCTGGCCGGCTGAGCGCCTGC
581 CTGAGGGGGACCCGACCGATCCCCGGCATGCGCATAC-TACCCCTCTGGCCGACTGAACGCCCGC
* * ** *
1673294 ATGCTCGTTTTGTGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
645 ACGCTCATTTCATGAGTTGACTTAGGCAT-CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* ** * * * * * * ** * * *
1673359 AAGGGTTGTGGGTGTACATGCTCGGCATGGGCATGTGCTGGTGCCACATT---T--TTTTCACCT
709 GAGGGTTACGGGTGCACATACTAGACCTGGG-AGGAACTGGTGCCGCATTCCCTGGCTTGCA--T
* * * * * * * * * ** *
1673419 GGGGCACCATCGCCGGAGCATTGTCGAAGAACCTGACCGGCAGCATTGGGGTTCCTCCGATT-GG
771 CGGGCACCATCGTC-G-G-ATCGGCGGAGAACCCGACCGACGGTATTGGGGTT-CGACGATTACG
* **** * *
1673483 GGGGTCGGGAAGGTGTGCGC--ACATGATGTGCGATGGG-TGCTG
832 GAGG-CCACCAGG-CTGCGCAAACAGGA-GTGCGA-GGGCTGCTG
* *
1673525 GTA-----CCCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACTCAAACCCGCTTAAAG
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAAACCCCCTTAAAG
* **
1673585 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTCT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGCCTGAAATGGGGACACTTCT
* *
1673650 TTCAAATGGTCACAAAATCCTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACC
131 TTCAAATGGTCACAAAATCCTATACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
1673715 AAAATACAAGGATCATGTCTACCACGTTTGGGGCCAAAACTCGTTCTGAAAAAATTTTAAAAAAA
196 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
** * *
1673780 TCTCGAACCATAAAAAGTTTTGAAAATTGTGAAAAATAGAGAACGAGTCATCTTGCCATGAAACT
261 TCTCGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGACATCTTGCCATGAAACT
* * * *
1673845 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTA
326 TCACATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAACCATAAAAATGGCATTGGCATGGCA
*
1673910 GAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
391 GAAATATAAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* * * * *
1673975 CTCTGGCCGACGTAGTGCCCCCCCGCCCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACTGAG
456 CTCTGGCCGACGTAGTGCCCACCCGCCCACCCGCTCATTTTATCGGTTGGCTTAGGCATACGGAG
* * * ** * *
1674040 TTCATTCCCAGTGTAAGATCGGATCGAACAGAGGGTTGCTGCAGCAGGATCGGTAGGACACTGTG
521 TTCATTCCCAATCTAAGATCGGATCGAACAGAGGGTTGCGGCAGCAGGATCGACAGCACACTGAG
* * *
1674105 GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAACGCCCGCACGCTC
586 GGGGACCCGACCGATCCCCGGCATGCGCATACTACCCCTCTGGCCGACTGAACGCCCGCACGCTC
* *
1674170 ATTTCATGATTTGACTTAGGCATCGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTT
651 ATTTCATGAGTTGACTTAGGCATCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
* * * ** *** *** * *
1674235 GCGGGTGCACATACTAGACTTGGGCATGTGCTGGTGCCGCATTTTTTTTTTTGCCTGGGGCACCA
716 ACGGGTGCACATACTAGACCTGGG-AGGAACTGGTGCCGCATTCCCTGGCTTGCATCGGGCACCA
* * * * **
1674300 TCGTCGGAACATCGTCGGAGAACCTGACCGACGGTATTGGGGTTCCGACGATTAGGGGGGCCAGG
780 TCGTCGG---ATCGGCGGAGAACCCGACCGACGGTATTGGGGTT-CGACGATTACGGAGGCCACC
* * * * *
1674365 GGGCTGCGCACACATGATGTGTGATGGCTGCTG
841 AGGCTGCGCAAACAGGA-GTGCGAGGGCTGCTG
* *
1674398 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAT
1 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAAACCCCCTTAAAG
*
1674463 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGCCTGAAATGGGGACACTTTT
66 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGCCTGAAATGGGGACACTTCT
* * *
1674528 TTCAAATGGTCACAAAATCCTATGCACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACA
131 TTCAAATGGTCACAAAATCCTATACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
1674593 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAA
196 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* *
1674658 TCTCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGACGTCTTGCCATGAAACT
261 TCTCGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGACATCTTGCCATGAAACT
* * *
1674723 TCACGTGAAGGTTTAAAGGACCATTGTATGAATTTAAAAACCATAAAAATGGCATTGGCATGGCG
326 TCACATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAACCATAAAAATGGCATTGGCATGGCA
* * *
1674788 GAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATGCATGGCTTGCGCATCCCGCCT
391 GAAATATAAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
* *
1674853 CTCTGGTCGGCGTAGTGCCCACCCG-CCACCCGCTCATTTTATCGGTTGGCTTAGGCATACGGAG
456 CTCTGGCCGACGTAGTGCCCACCCGCCCACCCGCTCATTTTATCGGTTGGCTTAGGCATACGGAG
* * * **
1674917 TTCATTCCCAATCTAAGATTGGA-CTGTACCA-AGGGTTG-GGACAGTAGGATCGACAGCATGCT
521 TTCATTCCCAATCTAAGATCGGATC-G-AACAGAGGGTTGCGG-CAGCAGGATCGACAGCACACT
* *** * * * **
1674979 GAGGGGGACTCGGTTGATCCTCGGCATGCGTATACTACCCCTCTGGCTGGTTGAACGCCCGCACG
583 GAGGGGGACCCGACCGATCCCCGGCATGCGCATACTACCCCTCTGGCCGACTGAACGCCCGCACG
* ** * *
1675044 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACC-GAACCGA
648 CTCATTTCATGAGTTGACTTAGGCAT-CGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGA
1675108 GGGTTACGG
711 GGGTTACGG
1675117 TAGCAGGATT
Statistics
Matches: 4353, Mismatches: 605, Indels: 359
0.82 0.11 0.07
Matches are distributed among these distances:
861 10 0.00
862 10 0.00
863 1 0.00
865 1 0.00
867 41 0.01
868 19 0.00
869 174 0.04
870 428 0.10
871 18 0.00
872 131 0.03
873 80 0.02
874 46 0.01
875 5 0.00
876 3 0.00
877 157 0.04
878 648 0.15
879 5 0.00
880 257 0.06
881 13 0.00
882 212 0.05
883 260 0.06
884 154 0.04
885 190 0.04
886 3 0.00
887 111 0.03
888 569 0.13
889 11 0.00
890 2 0.00
891 16 0.00
892 4 0.00
893 10 0.00
894 2 0.00
895 4 0.00
896 3 0.00
897 24 0.01
898 543 0.12
899 34 0.01
900 72 0.02
901 3 0.00
902 1 0.00
903 5 0.00
904 72 0.02
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (872 bp):
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAAACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGCCTGAAATGGGGACACTTCT
TTCAAATGGTCACAAAATCCTATACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
TCTCGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGACATCTTGCCATGAAACT
TCACATGAAGGCTTAAAGGACCATTGTATGAATTTAAAAACCATAAAAATGGCATTGGCATGGCA
GAAATATAAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
CTCTGGCCGACGTAGTGCCCACCCGCCCACCCGCTCATTTTATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAATCTAAGATCGGATCGAACAGAGGGTTGCGGCAGCAGGATCGACAGCACACTGAG
GGGGACCCGACCGATCCCCGGCATGCGCATACTACCCCTCTGGCCGACTGAACGCCCGCACGCTC
ATTTCATGAGTTGACTTAGGCATCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT
ACGGGTGCACATACTAGACCTGGGAGGAACTGGTGCCGCATTCCCTGGCTTGCATCGGGCACCAT
CGTCGGATCGGCGGAGAACCCGACCGACGGTATTGGGGTTCGACGATTACGGAGGCCACCAGGCT
GCGCAAACAGGAGTGCGAGGGCTGCTG
Found at i:1676610 original size:27 final size:27
Alignment explanation
Indices: 1676552--1676611 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
1676542 TTCCTTCTGA
* *
1676552 AAAAATTTTAAAAAAATCCTGAACAGT
1 AAAAATTTTAAAAAAATCCTGAAAAAT
* *
1676579 AAAAATTTT-CAAAAATCGTGAAAAAT
1 AAAAATTTTAAAAAAATCCTGAAAAAT
1676605 AGAAAAT
1 A-AAAAT
1676612 GAGTCGTCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 14 0.50
27 14 0.50
ACGTcount: A:0.58, C:0.08, G:0.08, T:0.25
Consensus pattern (27 bp):
AAAAATTTTAAAAAAATCCTGAAAAAT
Found at i:1676728 original size:878 final size:874
Alignment explanation
Indices: 1675055--1676817 Score: 2532
Period size: 878 Copynumber: 2.0 Consensus size: 874
1675045 TCGTTTTGTG
* ** * * *
1675055 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCTGACCGAACCGAGGGTTACGGTAG
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGACGGTTACGGCAA
* * ** * * * * ** *
1675120 CAGGATTGGCAGCACACTGAGGGGAACTTGGCCGATCCCTGGCTTGCGTATCGTGCCTTTCTGGT
66 CAGGATAGGCAGCACACAGAGGGGAACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
* * * *
1675185 CGGCTGAGCACCCGCACGCTTATTTTGTGGGTTGACTTATGCATACGGAGTTCATTCCCAGTCTA
131 CAGCTGAGCACCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
* * ** *
1675250 GGATCAAACAGGATCGAGGGTTGCTGGTGCACATGTTGGGCTCGGGCATGTGTTGGTGCAGCATT
196 AGATCAAACAGGACCGAGGGTTGCTGGTGCACATGCCGAGCTCGGGCATGTGTTGGTGCAGCATT
** * * ** * *
1675315 TTTTTTCGCCCGGGCCACCATCACCGAAGCATTGCCAGAGAACCTGTCTAGCGGCATTGGGGTTT
261 TTTTTTCGCCCGGGCCACCATCACCGAAGCATCACCAAAGAAACTAACCAGCGGCATTGGGGTTC
* *
1675380 CGATGATTGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTT
326 CGACGATTGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTAGCCCTT
*
1675445 ACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGCGATTT
391 ACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTT
* *
1675510 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAATGGTCACAA
456 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAATGGTAACAA
* *
1675575 AATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATGCAAGGATCA
521 AATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAATACAAGGATCA
* *
1675640 GGTATACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAA
586 GGTATACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCCGAACAGTAAAA
*
1675705 AGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
651 AGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
***
1675770 AGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
716 AGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCACCCCAGAAATATGAAGATGT
* *
1675835 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGTATCCCGCCTCTCTGGCCGACGTAG
781 GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGACATAG
* * *
1675900 TGCCCGCCTGCCCGCCCGCTT-GTTTCATC
846 TGCCCGCCCGCCCACCCG-TTCATTTCATC
* * * **
1675929 GGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGACTGACGGTTGTGGCAA
1 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGACGGTTACGGCAA
* *
1675994 TAGGATAGGCAGCA-AGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
66 CAGGATAGGCAGCACA-CAGAGGGGAACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGG
* * * *
1676058 CCAGCTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTGCTAGTCT
130 CCAGCTGAGCACCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
* * * * *
1676123 AAGATCGGATC-GGACCGAGGGTTGC-GAGTGCACATGCCGAGCTGGGGCATGTGTTGGTGCCGT
195 AAGATC-AAACAGGACCGAGGGTTGCTG-GTGCACATGCCGAGCTCGGGCATGTGTTGGTGCAGC
* * * ** * * * *
1676186 ATTTTTTTTTTCGCCTGGGGCAGCATCGTCGGAGCATCACCAAAGAAACTAACCGGTGGCATTTG
258 A--TTTTTTTTCGCCCGGGCCACCATCACCGAAGCATCACCAAAGAAACTAACCAGCGGCATTGG
* * *
1676251 GGTTCCGACGATTGGGGGGCCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTAG
321 GGTTCCGACGATTGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTAG
*
1676316 CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGCATTTG
386 CCCTTACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTG
1676381 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAATG
450 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTC-AATG
* *
1676446 GTAACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACA
514 GTAACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAATACA
* * * *
1676511 AGGATCATGTCTACCAAGTTTGGGGCCAAAATTCCTTCTGAAAAAATTTTAAAAAAATCCTGAAC
579 AGGATCAGGTATACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCCGAAC
*
1676576 AGTAAAAA-TTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATG
644 AGTAAAAAGTTTT-AAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATG
* *
1676640 AAGGCTTAAGGGACTATTGTATGAATTTACAAGA-TATAAAAATGGCATTGGCACCCC-GAAAAT
708 AAGGCTTAAGGGACCATTGTATGAATTTACAA-ACCATAAAAATGGCATTGGCACCCCAG-AAAT
* * *
1676703 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTTCGCATCCCGCCTCTTTG
771 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTG
*
1676768 GCCGGCATAGTGCCCGCCCGCCCACCCGTTCATTTCATC
836 GCCGACATAGTGCCCGCCCGCCCACCCGTTCATTTCATC
1676807 GGTTGGCTTAG
1 GGTTGGCTTAG
1676818 ACGTATGGAG
Statistics
Matches: 784, Mismatches: 94, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
873 2 0.00
874 209 0.27
875 2 0.00
876 154 0.20
877 79 0.10
878 337 0.43
879 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (874 bp):
GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAACCGACGGTTACGGCAA
CAGGATAGGCAGCACACAGAGGGGAACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGC
CAGCTGAGCACCCGCACGCTTATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
AGATCAAACAGGACCGAGGGTTGCTGGTGCACATGCCGAGCTCGGGCATGTGTTGGTGCAGCATT
TTTTTTCGCCCGGGCCACCATCACCGAAGCATCACCAAAGAAACTAACCAGCGGCATTGGGGTTC
CGACGATTGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTAGCCCTT
ACATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAATGGTAACAA
AATCCTGTACACTTCGAGTTTTTAGCTGAATTGTTTTATGCATGCCAAAAAAAATACAAGGATCA
GGTATACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCCGAACAGTAAAA
AGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
AGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCACCCCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGACATAG
TGCCCGCCCGCCCACCCGTTCATTTCATC
Found at i:1685459 original size:873 final size:870
Alignment explanation
Indices: 1682141--1688383 Score: 7375
Period size: 873 Copynumber: 7.2 Consensus size: 870
1682131 NNNNNNNNNN
* * *
1682141 CTCAAATGCTCTTTAA-GGGGTGT-AGTTCTC-AAGTTTGGATGAGGGATAGGAGGCCAATATAA
1 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT-GATGAGGTATAGGGGGCCAATATAA
* * * **
1682203 GGGCCAAGTA-C-GCACGCATCGCACATCATATGCGGCACACTCCCCGCGG-CCCCCCAATCACC
65 GGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACAC-CCCCCCGGCCCCCCCAATCGTC
* * * * * * **
1682265 AGAA-CCCAATTGTCGCCTGTCAGGTTCTCTGGCGATGCTCCGGCGTTGGTGGCGTGGGCGAAAA
128 GGAACCCCAA-TGCCGCCGGTCAGGTTCTC-GACGATGCT--GGAGATGGT-GCCCGGGCGAAAA
** * ** * * * *
1682329 AAAATGCGGCACTAGCACATGCTTGAGCCAAGCATGTGCACCGC-CAACCCTAGGTCTGGTCCAA
188 AAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC-CACAACCCTCGGTCCGGTCCGA
* * * *
1682393 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGA-AGTGCGGGCGCTCAG
252 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * * *
1682457 CCGAGCCCAAAGGGGCAGGATGCCGCAAGCTGGGGATGCG-TC-GAGTCCTCGCTTCAACATGCT
317 CCG-G-CCAGAGGGGCAGGATG-CGCAAACCGGGGAT-CGATCAG-GTCC-C-CCTCAGCGTGC-
*
1682520 TGTCGATCCT--T---G-----CT--GT-C---CTGATCTTAGACCTGGGAAATGAACTCCTGTA
374 TGCCGATCCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGA-CTGGG-AATGAACTCC-GTA
* * *
1682569 TGCCTAAAGCCAACCGATGAAACAGCGGGCGGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGG
436 TGCCT-AAGCCAACCGATG-AA-A-TGAGCGGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGG
* *
1682634 GATGCGCAAGCCATGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
497 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT
* *
1682699 GCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTGATGTGAAGTTTC
562 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
* *
1682764 ATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTT
627 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTGAAGATTTTTT
* *
1682829 T-AAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGG
692 TAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * *
1682893 CATGCACAAAAATATTCAGCTAAAAACTTGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGT
757 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
* *
1682958 GTCCCCATTT-AGACACTTTAATGGTTTCTGGCAGCAAACCTGTAAAAT
822 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
1683006 CTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATA---GG---------G
1 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAG
* * *
1683059 GG-CAAGTACCAGCACCCATCGCAAATCATGTGCGCACACCCCCCCGG-CCCCCCGATTGTCGGA
66 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGTCGGA
* * *
1683122 ACCCCAATGCCACCGGTAAAGGTTTTTTGTTTTCTCCGATGATGCCCTCCGGACGATGGTGCCCG
131 ACCCCAATGCCGCCGGT-CA-G------G--TTCT-CGACGATG--CT--GGA-GATGGTGCCCG
* * *
1683187 GGCAAAAAAAAAATAAGGCA-CAGCAACATGCTCGATGCCCAAGCCATGTGCACCCACAACCCTC
180 GGC-GAAAAAAAATATGGCACCAGC-ACATGCCCGA-GCCC-AG-CATGTGCACCCACAACCCTC
** * * * * *
1683251 GGT-CGGTTTGAACTTAGAACTGGGAATG-ACTCCGTATG-CTACGTCAACCTACGGAACGAGTG
240 GGTCCGGTCCGATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * ** * *
1683313 TACGGGCGCTCAACCGACCAGAGGGGCAGGATGCACAAGCCATGGATCGGT-AGGGTCCCCCTCT
304 TGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAACCGGGGATCGATCA-GGTCCCCCTCA
* * * * ** * *
1683377 GCGTGTTGCCGATCCTGCTGCTGCAACCTTCGGTCTAGTCTGGTCTTAGACTAGGAATGAACTCC
368 GCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
*
1683442 ATATGCCTAAGCC-ACCGATGAAATACGAGCGGGCAGCGGGCGGGCACTACG-CGG-CAGAAGAG
433 GTATGCCTAAGCCAACCGATGAAAT--GAGCGGG--GCGGGCGGGCACTACGCCGGCCAG-AGAG
* * *
1683504 ACGGGATGCGCAAGGCCATGGATCGAT-GGGTGGTAGGTGGGTTTAGG-ACATCTTCATATTTTT
493 GCGGGATGCGCAA-GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
1683567 GTCATGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGTA
557 GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* * ** ** *
1683632 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAAAATTTTATGGTTCG-AGA
622 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-GAAGA
* **
1683696 TTTTTTTAAAATTTTCTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTAATATTTT
686 TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * ** *
1683761 TTTTGGCGTGCACAAAAAAATTCAATTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAA
751 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAA
* * *
1683826 AAAAATATCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAAT
816 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* ** **
1683881 CTTAAATGCTCTTTAAGGGGGAATGAGTTCTCGAGGTTTGATGAGG-ATAGGGCACCAATATAAG
1 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAG
* * * *
1683945 GGCCAAGTACCAGCA-CCAGT-GCACATCTTGTGCGCACCCCCCCTCCGGCACCCTCAATCGTCG
66 GGCCAAGTACCAGCACCCA-TCGCACATCATGTGCGCACACCCCC-CCGGCCCCCCCAATCGTCG
* * * * * *
1684008 GAA-CCAAATGCCGCCGGTCAAGGTTCTCAACGATGGTCCGACGATAGTGCCCGTGCGAAAAAAA
129 GAACCCCAATGCCGCCGGTC-AGGTTCTCGACGATGCT-GGA-GATGGTGCCCGGGCGAAAAAAA
* * * * * * *
1684072 GTATGGCACCAAGCAGATGCCCCAAGCCCAGCATGTGCACCCATAACCTTCTGTCCGATCCGATC
191 ATATGGCACC-AGCACATG-CCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATC
** * *
1684137 TTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACC
254 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
* * * * * * **
1684202 GGCCAGAGTGGCAGGATGTGCAAGCTGGGGATC-AGTCGGGTCCCCCTCAGCATGCTATCGATCC
319 GGCCAGAGGGGCAGGATGCGCAAACCGGGGATCGA-TCAGGTCCCCCTCAGCGTGCTGCCGATCC
* * * *
1684266 TACTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
383 TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
1684331 CCGATGAAACGAGCGGGCGGCTGGGCGGGCACTACGTCGGCCAAAGAGGCGGGACGCGCAAGCCG
448 CCGATGAAATGAGC-GG-GGC-GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
*
1684396 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTT
510 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
**
1684461 TTATGGCTTGTAAATTCATATGATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
575 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
1684526 TCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCG-AGATTTTTTTCAAATTTTTTC
640 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT-GAAGATTTTTTTAAAATTTTTTC
* *
1684590 AGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAA
704 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
1684655 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAA
769 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
1684720 GACACTTTAACGGCTACTGGCAGCAAACCTGTAAAAT
834 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
1684757 CTCAAATGCT-TTTAAAGGGGGTGTGAGTT-TCTGAGGTTTGATGAGGTATAGGGGGCCAATATA
1 CTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGTATAGGGGGCCAATATA
* * *
1684820 AGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCCAATTGCCG
64 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGTCG
1684885 GAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTTTGGAGATGGTGCCCCGGGCGAAAAAA
129 GAACCCCAATGCCGCCGGTCAGGTTCTC-GACGATGC--TGGAGATGGTG-CCCGGGCGAAAAAA
* * * * * *
1684950 AATGTGGCACAAGCACATTCCCAATCCCAGCATGTGCACCCACAACCCTCAGTCCGGTCCGATCT
190 AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCT
* * * * **
1685015 TAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACGAAACGAGTGTGTGGACGCTCCGCCG
255 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCG
* * * * * *
1685080 GCCAGAGGGGTAGGATGCGTAAATCGGGGATCGATCAGGTCTCCCTCAACGTGCTGCTGATCCTA
320 GCCAGAGGGGCAGGATGCGCAAACCGGGGATCGATCAGGTCCCCCTCAGCGTGCTGCCGATCCTA
* ** * *
1685145 CTGCGGCAACCCTCTATCCGGTTTGATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACC
385 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** *
1685210 GACGAAATGAGC-GGGCGGGCGGGCACTACGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGAT
450 GATGAAATGAGCGGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * *
1685274 CGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCTGCCATGGCAATGGCATTTTTATG
515 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
1685339 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
580 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
1685404 TTCTATTTTTCACGATGTTTGAAACTTTTTACGATTGAAGATTTTTTTAAAATTTTTTCAGAAGG
645 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTGAAGATTTTTTTAAAATTTTTTCAGAAGG
*
1685469 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCA
710 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
1685534 GCTAAAAACTCGAAGTGTACAGGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
775 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
1685599 TTAATGGCTACTGGCAGCAAACCTATAAAAT
840 TTAATGGCTACTGGCAGCAAACCTGTAAAAT
*
1685630 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTTATA-GGGGCCAATATAAG
1 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAG
* * * * **
1685694 GGCCAAGTACTAGTACCCACCGTACATCATGTGCGCACACCCCTCCC-G--TACCCAATCGTCGG
66 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCCCAATCGTCGG
* *
1685756 AACCCCAATGCCGTCGGTCAGGTTCT---C----C-GGATATGGTGGCCCGGGCGAAAAAAAATA
130 AACCCCAATGCCGCCGGTCAGGTTCTCGACGATGCTGGAGATGGT-GCCCGGGCGAAAAAAAATA
* * * * *
1685813 CGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCTGATCTTAAA
194 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTAGA
1685878 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCA
259 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCA
* * * * *
1685943 GAGGGGCAGGATGCGGAAGCCGGGGATCG-TCTGGGTCCCCCTCAGCGTTCTGCCAATCCTACTG
324 GAGGGGCAGGATGCGCAAACCGGGGATCGATC-AGGTCCCCCTCAGCGTGCTGCCGATCCTACTG
* * ** *
1686007 CCACAACCCTAGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGAT
388 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * ** *
1686072 GAAACGAGCGGGCGGGTGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGTTAGCCGTTGAT
453 GAAATGAGC--G-GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * * *
1686137 CGATAGGGTGGTAGGTGGGTTTTGGTACATCTTCATATTTTTGCCATGCCAATGCCATTTTTGTG
515 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
1686202 GCTTGTAAATTCA-ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
580 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
1686266 TTCTATTTTTCATGATTTTTGAAATTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGG
645 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTGAAGATTTTTTTAAAATTTTTTCAGAAGG
** *
1686331 AGTTTTGGAACCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCA
710 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * * *
1686396 ACTAAAAACTCGAAGTGTACAGGAATTTGTGACCATTTCAAAAAAAGTGTCCCCATTTCAAACAT
775 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACAC
* *
1686461 TTTAACGGCTACTGGCAGCAAACCTATAAAAT
839 TTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
1686493 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTTATAGGGTGCCAATATAAG
1 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAG
* *
1686558 GGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACGCACCCCCC-G-CCCCCCAATCGTCGG
66 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCCAATCGTCGG
* * **
1686621 AACCCCAATGCCGTCGGTCAGGTTCTC--CGA--C----GATGGTGGCCCGAGCGAAAAAAAAGG
130 AACCCCAATGCCGCCGGTCAGGTTCTCGACGATGCTGGAGATGGT-GCCCGGGCGAAAAAAAATA
* * * *
1686678 CGACACCAGCACATGCCCGAGCCCAGCGTGTGCACCCACAACCTTTGGTCTGGTCTGATCTTAGA
194 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACC------C---TC-GGTC-----
* *
1686743 CTGGGAATCAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
244 C--GG--T---C--C-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * * **
1686808 CGAGGGTGCGGGCGCTCAGCCAGCCAGAGGGGTAGGTTGCGCAAATCGGGGCTCGGCCAGGGTCC
298 CGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAACCGGGGATCGATCA-GGTCC
* * ** * * * *
1686873 CCCTCAGTGTGCTACCGATGTTGCTGTCGCAACCTTCGGTCCGGTCTGATCTTAGACTAGGAATG
362 CCCTCAGCGTGCTGCCGATCCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* *
1686938 AACTCTGTATGCCTAAGCCAACCGATGAAATGAGCGGACAGGCGGGCGGGCACTACGCCGACCAG
427 AACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGG---GGCGGGCGGGCACTACGCCGGCCAG
* * *
1687003 AGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCACATT
489 AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* ** * * *
1687068 TTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCGTAGGCCTTCATAT
554 TCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGT
* * *
1687133 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAG
619 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTGAA
* * * *
1687198 GATTGTTTTT-TAATTTTTTCAGAAAGCGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTAT
684 GATT-TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
1687262 ATTTGTTGGCATGAACAAAAAAATTCAGCTAAAAACTAGAAGTGTAGAGGATTTTGTGACCATTT
748 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
*
1687327 GAAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACT-GCTAGCAAACCTGTAAAAT
813 G-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAAT
* * *
1687386 CTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGTTATAGGGAGCCAATATAAG
1 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAG
* * * *
1687451 GGCCAAGTACCAGCACCCATCGGACATCATATGCACACA-CCCCCCGGCCCCCCCAATTGTCGGA
66 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGTCGGA
* * * * * *
1687515 AACCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGAGCGAAAAGAAA
131 ACCCCAATGCCGCCGGTCAGGTTCT-CGACGATG--CTGGAGATGGTG-CCCGGGCGAAAAAAAA
* * * **
1687580 TATGGCACCAGCACATGCCCGAGCCCAGCATGTGCACTCGCAACCCTCGATCCAATCCGATCTTA
192 TATGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTA
* * * * *
1687645 GACTGGGAATGAACTCCGTACGCCTAAGTCAACCCATGAAACTAGCGTGCGAGCGCTCAACCAGC
257 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGC
* * * * * * * * *
1687710 CAGTGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCTCTTAGCGTACTGTCGATCCTGCT
322 CAGAGGGGCAGGATGCGCAAACCGGGGATCGATCAGGTCCCCCTCAGCGTGCTGCCGATCCTACT
* * * * * *
1687775 GCCACAACCCTTGGTCTGGTC-CAGTCTTAGCCTGGGAATGAACTCCGTATGCCTAAGGCAACCG
387 GCCGCAACCCTCGGTCCGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
1687839 ATGAACTGA---------GCGGGCACTACACCGGCCAAAG-GGCGAGATGCGCAAGCCGTGGATC
451 ATGAAATGAGCGGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* *
1687894 GATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTCTGTCATGCCAATGCCATTTTTATGG
516 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
1687959 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
581 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
** * * *
1688024 TCTATTTTTCATAATTTTTGAAACTTTTTACAGCTTG-GGATTTTTTAAAAATTTTTTCAGAAGG
646 TCTATTTTTCACGATTTTTGAAACTTTTTAC-GGTTGAAGATTTTTTTAAAATTTTTTCAGAAGG
* * * * *
1688088 TGTTTTGGTCCTAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGTCATGCACAAAAAAATTCA
710 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
1688153 GCTAAAAACTCGAATTGTACAGAATTTTGTGACCTTTTGAAAAAA-TGTACCCATTTCAGACACT
775 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
1688217 CTAATGGCTACTGGCAGCAAACCTGTAAAAT
840 TTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
1688248 CACAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
1 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAG
* *
1688313 GGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGCCCCCCCAATCGTCGGA
66 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGTCGGA
*
1688377 ATCCCAA
131 ACCCCAA
1688384 CATGTGCACT
Statistics
Matches: 4657, Mismatches: 551, Indels: 343
0.84 0.10 0.06
Matches are distributed among these distances:
854 32 0.01
855 16 0.00
856 20 0.00
858 2 0.00
859 252 0.05
860 1 0.00
862 376 0.08
863 240 0.05
864 352 0.08
865 147 0.03
866 38 0.01
867 61 0.01
868 27 0.01
869 36 0.01
870 65 0.01
871 1 0.00
872 85 0.02
873 610 0.13
874 367 0.08
875 178 0.04
876 347 0.07
877 367 0.08
878 155 0.03
879 35 0.01
880 4 0.00
882 3 0.00
884 1 0.00
885 1 0.00
886 27 0.01
887 32 0.01
888 13 0.00
889 2 0.00
890 3 0.00
891 95 0.02
892 209 0.04
893 381 0.08
894 10 0.00
895 2 0.00
896 2 0.00
898 1 0.00
900 1 0.00
903 1 0.00
904 59 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCAATCGTCGGA
ACCCCAATGCCGCCGGTCAGGTTCTCGACGATGCTGGAGATGGTGCCCGGGCGAAAAAAAATATG
GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGA
GGGGCAGGATGCGCAAACCGGGGATCGATCAGGTCCCCCTCAGCGTGCTGCCGATCCTACTGCCG
CAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
ATGAGCGGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTACGGTTGAAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAAT
Found at i:1686788 original size:26 final size:26
Alignment explanation
Indices: 1686737--1686789 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1686727 CTGGTCTGAT
*
1686737 CTTAGACTGGGAATCAACTTCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* *
1686763 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
1686789 C
1 C
1686790 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:1688454 original size:26 final size:26
Alignment explanation
Indices: 1688418--1688468 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1688408 CAATCTGATC
1688418 TTAGACTGGGAATCAACTCCGTATGG
1 TTAGACTGGGAATCAACTCCGTATGG
*
1688444 TTAGATTGGGAATCAACTCCGTATG
1 TTAGACTGGGAATCAACTCCGTATG
1688469 CCAAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATCAACTCCGTATGG
Found at i:1689350 original size:26 final size:26
Alignment explanation
Indices: 1689314--1689366 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1689304 CTGATCCGAT
*
1689314 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1689340 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1689366 C
1 C
1689367 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1691829 original size:26 final size:26
Alignment explanation
Indices: 1691790--1691842 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
1691780 CTGGTCTGAT
*
1691790 CTTAGATTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
* * *
1691816 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
1691842 C
1 C
1691843 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:1692325 original size:891 final size:867
Alignment explanation
Indices: 1690186--1696704 Score: 6150
Period size: 874 Copynumber: 7.5 Consensus size: 867
1690176 AGCATGTGCA
* * * *
1690186 ACCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGA
1 ACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* * * * * * *
1690251 CGAAATGAGCAGGCGGACAGGCGAGA-TCTAC-CCGACCAGAGAGGCGGGATGCGTAAGCCGTGG
66 CGAAACGAGCGGGCGGGCGGGCG-GACACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * * * * * *
1690314 ATCAATAGGGTGGTAGCTAGCTTTAGGCACATCTTCATATTTTTTCCATGCCAAAGCCATTTTTA
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCCATGCCAATGCCATTTTTA
* *
1690379 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCA
* *
1690444 TTTTCTATTTTTTCACATTTTTAAAAATTTTTACGGTTCGAGATTTTTTAAAAACTTTTTCAGAA
260 TTTTCTA-TTTTTCACATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAA
1690509 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* *
1690574 CAGCAAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACA
389 CAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
1690639 CTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
1690704 GAGGTTTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTC-CACATCATA
519 GAGGTTTGATGAGGGATAGGGGG-CAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCATG
* * * * *
1690768 TGCGCACA-CCCCCCGACCCCCCCAATTGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCTAATG
582 CGCGCACACCCCCCCG-CCCCCCCAATCGCCGGAACACCAATACCGCCGGTCAGGTTCTC-----
** *
1690832 ATGCTACGACGATGGTGCCCCGAGCGAAAAAAAATGTGCACCAGCACATGCCCGAGCCCAGTATG
641 ATGC-ACGACGATGGTGCCCCGAGCGAAAAAAAATACGCACCAGCACATGCCCGAGCCCAGCATG
** *
1690897 TGCACCCGTAACCCTCCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGTCAA
705 TGCACCCACAACCCTCCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
1690962 CCCACGAAATGAGCGTGCGGGTGCTCAGTCTGCCAGAAGGGTAGGATGCGCAAGCCGGGGATTGG
770 CCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAAGGGTAGGATGCGCAAGCCGAGCATCGG
1691027 TCGGGTCCCCCTCAGCGTGCTACCGATCTTACT
835 TCGGGTCCCCCTCAGCGTGCTACCGATCTTACT
* * * * *
1691060 GCCACAAACCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAGGCCTAAACCAACTGA
1 ACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* * * * * *
1691125 CGAAACGAGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGTGGGATACGCAA-TCGTGGA
66 CGAAACGAGCGGGCGGGCGGGCGGACACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
*
1691189 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCCATGCCAATGCCATTTTTAT
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCCATGCCAATGCCATTTTTAT
1691254 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
* * * * *
1691319 TTTCTATTTTTCATAATTTTAAAAACCTTTTACGGTTTGAGATTTTTTTAAAATTTTTTCA-AAT
261 TTTCTATTTTTCA-CATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAA-
** * *
1691383 GGAGTTTTGGCCGTAAACCTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* * *
1691448 CAACTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
389 CAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
1691513 CTTTAATGGCTACTTGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTC
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
1691578 GAGGTTTGATGAGGGATAAGGGGCAAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGC
519 GAGGTTTGATGAGGGATAGGGGGC-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGC
* *
1691643 GCGCACACCCCCCCGCCCCCCCAATCGTCGGAACATCAATACCGCCGGTCAGG-T-TC-T-C-CG
583 GCGCACACCCCCCCGCCCCCCCAATCGCCGGAACACCAATACCGCCGGTCAGGTTCTCATGCACG
* * * * *
1691703 ACGATGGTGCCTCGGGTGAAAAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGTGTACCC
648 ACGATGGTGCCCCGAGCGAAAAAAAATACG-CACCAGCACATGCCCGAGCCCAGCATGTGCACCC
* *
1691768 ACAACCCTCGGTCTGGTCTGATCTTAGATTGAGAATGAACTCCATATGCTTAGACTGGGAATTAA
712 ACAACCCTC---C--GTC----C---------G---G---TCC-GAT-CTTAGACTGGGAATGAA
* *
1691833 CTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAGGGGTAGGA
751 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAAGGGTAGGA
* ** *
1691898 TGCGCAAGCCGAGCATCGGTCGGGTCCCCCTCAGTGTGCTGTCGATCTTGCT
816 TGCGCAAGCCGAGCATCGGTCGGGTCCCCCTCAGCGTGCTACCGATCTTACT
* * *
1691950 ACCCCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACTGA
1 ACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* * * *
1692015 CGAAACGAGCGGGCGGGCGGGCGGACACTGCGCCGGCCAAAGAGACGGGATGCGCAAGCCATGGA
66 CGAAACGAGCGGGCGGGCGGGCGGACACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
1692080 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCCATGCCAATGCCATTTTTAT
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCCATGCCAATGCCATTTTTAT
*
1692145 GGCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
* * *
1692210 TTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCCAGATTTTTTAAAAATTTTTTCAGAAG
261 TTTCTATTTTTCAC-ATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAG
* *
1692275 GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAACAATT
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA-AATT
1692339 CAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
389 CAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
1692404 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
1692469 GAGGCTTGATGAAGGATAGGGGGGCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGC
519 GAGGTTTGATGAGGGATA-GGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGC
* **
1692534 GCGCACACCCCCGCCCCGCCCCCCAATCGCCAAAAC-CCTAAT---GCC--TCAGGTTCTC---C
583 GCGCACACCCCC-CCGC-CCCCCCAATCGCCGGAACACC-AATACCGCCGGTCAGGTTCTCATGC
* * * * * *
1692590 A-G-TGATGATGGCCCGGGCAAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
645 ACGACGATGGTGCCCCGAGCGAAAAAAAATA-CGCACCAGCACATGCCCGAGCCCAGCATGTGCA
** ** ** * * * *
1692653 -CTGCAACCCTTGGTCCATTCTGATCTTAGACTGGGAA--AA-ACCAT-TGCC---G-C-A--TA
709 CCCACAACCCTCCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
1692706 C-AAA--AG-GT---GGCACT-AATC-GACC--AAGGGCAAGATGCGCATGTCC-CG-AT---TC
774 CGAAACGAGCGTGCGGGCGCTCAGTCAG-CCAGAAGGGTAGGATGCGCAAG-CCGAGCATCGGTC
* * * *
1692755 --GTCTCCTTTAGCGTGCT---GTAT-TT-GT
837 GGGTCCCCCTCAGCGTGCTACCG-ATCTTACT
** ** * *
1692780 -CCGTAACGTTCAGT-C-GTCTG-TCTTAGACTGGGAATGAACTCCG---GTCT-AG-CAACTGA
1 ACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* * * *
1692836 TCGAAA-GA--GGG-AGGC-GACGGACA--A--------A-AG-GG-AGGAT-C-CAAG-CGTCG
66 -CGAAACGAGCGGGCGGGCGGGCGGACACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * *
1692880 ATCGATA------TAGGTGGG-TT-GGCACA---TC-TAATTTTGCCTTG--AATGTCA-TTTTA
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCCATGCCAATGCCATTTTTA
*
1692930 TGGCTTGTAAATTCATACAATGGT-CCTTAAG-CTTCAAT-TGAAG-TTCAT-GCAAAGATGACT
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ATGTGAAGTTTCATGGC-AAGACGACT
* *
1692990 -AGTGTTT-T-TTTTTGGCACATATTTTTTGGAAACTTTTTACGGTTCAAGA-TTTTT--AAATT
258 CA-T-TTTCTATTTTT--CAC--A-TTTTT-AAAACTTTTTACGGTTCGAGATTTTTTAAAAATT
* * * *
1693049 TTTTCAGAAGGAGTTTTGGCCCCAAACTCGGTAGACATGATCCTTGTATTTTTGTTGGCATGTAC
315 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
* *
1693114 AAAAAAATTCAACTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
380 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* **
1693179 TTTCAGACATTTTAATGGCTACTACTGGTGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
445 TTTCAGACACTTTAATGG---CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
1693244 GTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATACGAGCCAAGTACCAGCACCCAT
507 GTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGGCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * * * * *
1693309 TGCACATCATGTGCACACA-CTCCCCGGCCCCCTAATCGCCGGAACCCCAATGCCACCGGTCAGG
571 CGCACATCATGCGCGCACACCCCCCCGCCCCCCCAATCGCCGGAACACCAATACCGCCGGTCAGG
* * * * * * *
1693373 TTCTCCGGTGATGCTTCGACAATGGCGCCCCGGGCGAAAAAAAATGCGACACCATCACATGCCCA
636 TTCT-C----ATGC-ACGACGATGGTGCCCCGAGCGAAAAAAAATACG-CACCAGCACATGCCCG
*
1693438 AGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAATCCGTAT
694 AGCCCAGCATGTGCACCCACAA----C---CC--TCCG-TC-----C---G---G---TCCG-AT
* * * *
1693503 GCTTAGACTGGGAATTAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGTTCAG
734 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * **
1693568 -CTGGCCAGAGGGGCAAGATGCGCAAGCC-AGGGATCGATCGGGTCCCCCTCTGAGTGCTGTCGA
798 TC-AGCCAGAAGGGTAGGATGCGCAAGCCGA-GCATCGGTCGGGTCCCCCTCAGCGTGCTACCGA
* *
1693631 TCCTGCT
861 TCTTACT
* * * ** * * *
1693638 GCCTCATCCCTTAGTCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGA
1 ACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* * * * *
1693703 CGAAACGAGCGGGCGGGTGGGCAGG-CACTTCGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGG
66 CGAAACGAGCGGGCGGGCGGGC-GGACACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * **
1693767 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCAATGCCATTTTTA
130 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCCATGCCAATGCCATTTTTA
* * *
1693832 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATAGCAAGATGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCA
* * * * *
1693897 TTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTATAAAAATTTTTTCAGAA
260 TTTTCTATTTTTCA-CATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAA
* *
1693962 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATT
324 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
* * **
1694027 CAGCTAAAAACTCGAAGTTTACAGGATTTTGTGGTCATTTGAAAAAAGTGTCCCCATTTCAGACA
389 CAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
1694092 CTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTT
454 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
1694157 GAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
519 GAGGTTTGATGAGGGATAGGGG-GCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGC
* * * * *
1694222 GCGCACACCCCCCCGGCCCCCCAATCTCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
583 GCGCACACCCCCCCGCCCCCCCAATCGCCGGAACACCAATACCGCCGGTCAGGTTCT----C-AT
* * * * * * ** * *
1694287 GCTCCGGCGATGATGGCCCGGGCAAAAAAAAATGTGGCACCAGCACATGCCCAAGCCTAGCATGT
643 GC-ACGACGATGGTGCCCCGAGCGAAAAAAAAT-ACGCACCAGCACATGCCCGAGCCCAGCATGT
* * ** * *
1694352 GCACCCGCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
706 GCACCCACAACCCTCCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * *
1694417 CCACAAAATGAGCGTGTGGGCACTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCAGAG-ATCGA
771 CCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAAGGGTAGGATGCGCAAGCC-GAGCATCGG
* * * * * * *
1694481 CCGGGTCCCTCTCTGCGTGCTGCCAATCCTGCT
835 TCGGGTCCCCCTCAGCGTGCTACCGATCTTACT
* * * * * * **
1694514 GCCACAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCGGTACGCCTAAGCCAACCAA
1 ACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* * * * * * *
1694579 CGAAACGAACGGGCGAGCGGGCGGGCACAACGCCAGCTAGAGAGGTGGGATGCGCAAGCCGTGGA
66 CGAAACGAGCGGGCGGGCGGGCGGACACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* * * * *
1694644 TCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCCATATTTCTACCATG-C-ATG-CA---GTA
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-CTTATTTTTGCCATGCCAATGCCATTTTTA
1694703 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCTCATGTGAAG-TTCATGGC-AGACGACTC
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT-TCATGTGAAGTTTCATGGCAAGACGACTC
* * * * *
1694766 GTTTTTTATTTTTCACGGATTGTT-AAA--TTTTACGGTTCGA-ATTTTTTCAAAATTTTTTTAG
259 ATTTTCTATTTTTCAC--ATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAG
* *
1694827 AAGGAG-TTT-GCCCC-AACTTGGTAGACGTGATCC-TG--TTTTTGTTGGCATGCAC-AAAACA
322 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
*
1694885 TTCA-CGTAAAAACTC-GAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAG
387 TTCAGC-TAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
1694947 A-ACTTTAATGGCTACTGGCAGCAAACCT-TAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTT
451 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
1695010 CTCAAGGTTTGATGAGGGA-AGGGGCCAATATAAGGGCCAAGTACCAG-A-CCATCGCAAATCAT
516 CTCGAGGTTTGATGAGGGATAGGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * *
1695072 GTGCGCACA-CACCCCG--ACCTCAAT--CC--AAC-CACAAT---GCCCGTCAGGTTCCGGCGA
581 GCGCGCACACCCCCCCGCCCCCCCAATCGCCGGAACAC-CAATACCGCCGGTCAGGTT-C-TC-A
* * * * * ** ** *
1695126 GGCTCCGGCGATGGTGGCCCGGGC-AAAAAACAATGTGGCACCAGCACATGTTCGAGCCCAGTAT
642 TGC-ACGACGATGGTGCCCCGAGCGAAAAAA-AAT-ACGCACCAGCACATGCCCGAGCCCAGCAT
* ** * *
1695190 GCGCACCCGGAACCCTCGGGCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTCGATTG
704 GTGCACCC---A-CAAC---CC--TCCG-TC-----C--GG--T---C--CG-AT-CTTAGACTG
* * * * * *
1695255 GGAACGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGTGTGCGGGCACTCAG-CTGGCTAGA
743 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-AGCCAGA
* * * * * * * * * * * **
1695319 GGGGTAGGATGCGCAAGTCGGGGATTGGCCGGGTCCCTCTCTA-CATGCTGCAGATCCTGTT
807 AGGGTAGGATGCGCAAGCCGAGCATCGGTCGGGTCCCCCTC-AGCGTGCTACCGATCTTACT
* * * * ** *
1695380 GCCGCAACCCTTGGTCTGGTCCAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-TCG
1 ACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACT-G
* * *
1695444 ACGAAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGG
65 ACGAAACGAGCGGGCGGGCGGGCGGACACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGG
* * * **
1695509 ATC-AGTAGGGTGGTTGGTGGGTTTAGGCACATCTT-ATATTTTTTCTGTGCCAATGCCATTTTT
130 ATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCCATGCCAATGCCATTTTT
*
1695572 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCGAGACGACTC
194 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * * ** * * *
1695637 GTTTTCTAGTTTTAATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTT-TAAATTTTTTCATA
259 ATTTTCTATTTTTCA-CATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGA
* ** * ** * *
1695701 AGGAATTTTCACCCCAAATTTACTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAT
323 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
* * *
1695766 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTAGAC
388 TCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
1695831 ACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTC-AATGCTCTTTAAGGGGGTGTGAGTTCT
453 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
1695895 CTGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATG
518 C-GAGGTTTGATGAGGGATAGGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
1695960 TGCGCACACCCCCCCG-CCCCCCAATCGCCGGAACCCCAATGCCGTCGGTCA-GTTCTC--G---
582 CGCGCACACCCCCCCGCCCCCCCAATCGCCGGAACACCAATACCGCCGGTCAGGTTCTCATGCAC
* * * * * *
1696018 G-TGATGG-CCCCCGAGC-AAAAAAAA-ATGACACCAGCACATGCCCAAGCCCAACATGTGTACC
647 GACGATGGTGCCCCGAGCGAAAAAAAATACG-CACCAGCACATGCCCGAGCCCAGCATGTGCACC
* * *
1696079 TGCAACCATCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATGTGCTTAGACTGGGAATGA
711 --C-A-CA---A-CC-CTCCG-TC-----C--GG--T---C-CGA--T-CTTAGACTGGGAATGA
* * * * *
1696144 ACTCCGTTTGCTTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCAGCCAG-AGGGTAGG
750 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGCCAGAAGGGTAGG
* * * * * * *
1696208 ATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTCAACGTGCTGCCGATCCTACT
815 ATGCGCAAGCCGAGCATCGGTCGGGTCCCCCTCAGCGTGCTACCGATCTTACT
* * * * *
1696261 GCCACAACCCTCAGTTCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACTGA
1 ACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
* ** * ** * *
1696326 CGAAACGAACGGGCGGGTAGGCGGGCACTACGCCTCCCAAAGAGGCAGGATGCGCAAGCCGT-G-
66 CGAAACGAGCGGGCGGGCGGGCGGACACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* *
1696389 --G-TA-GGT-G--GGT---TTT-GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
131 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCCATGCCAATGCCATTTTTAT
* * * *
1696443 GACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTGTCATGGTAAGACGACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
* * * * * *
1696508 TTTCTATTTTTCATGATTTTTGAAACTTTTTACAGCTCGAGATTTTTTTAAAATTTTCTCAGAAG
261 TTTCTATTTTTCA-CATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAG
*
1696573 GAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CTTGTATTTTTCTTGGCATGCACAAAAAAATTC
325 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
* *
1696637 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGCCCCCA-TTCTAGACA
390 AGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACA
1696701 CTTT
454 CTTT
1696705 GATGAGGGAT
Statistics
Matches: 4786, Mismatches: 552, Indels: 619
0.80 0.09 0.10
Matches are distributed among these distances:
782 8 0.00
783 15 0.00
784 173 0.04
785 19 0.00
786 42 0.01
787 143 0.03
789 20 0.00
790 3 0.00
793 6 0.00
794 2 0.00
795 8 0.00
797 1 0.00
799 2 0.00
800 49 0.01
801 15 0.00
802 4 0.00
803 1 0.00
804 4 0.00
805 2 0.00
806 2 0.00
807 1 0.00
808 2 0.00
810 2 0.00
811 2 0.00
816 1 0.00
817 7 0.00
818 3 0.00
819 3 0.00
821 9 0.00
822 7 0.00
823 3 0.00
825 3 0.00
826 23 0.00
827 18 0.00
828 1 0.00
829 11 0.00
830 3 0.00
831 7 0.00
832 2 0.00
834 14 0.00
835 1 0.00
836 3 0.00
838 2 0.00
839 11 0.00
840 75 0.02
841 5 0.00
842 17 0.00
843 6 0.00
844 3 0.00
845 12 0.00
846 5 0.00
847 9 0.00
848 17 0.00
849 14 0.00
850 3 0.00
851 6 0.00
852 25 0.01
853 2 0.00
854 36 0.01
855 5 0.00
856 52 0.01
857 34 0.01
858 15 0.00
859 45 0.01
860 19 0.00
861 34 0.01
862 25 0.01
863 31 0.01
864 68 0.01
865 16 0.00
866 263 0.05
867 35 0.01
868 24 0.01
869 241 0.05
870 115 0.02
871 77 0.02
872 17 0.00
873 42 0.01
874 539 0.11
875 39 0.01
876 275 0.06
877 18 0.00
878 5 0.00
879 16 0.00
880 21 0.00
881 200 0.04
882 130 0.03
883 58 0.01
884 42 0.01
885 35 0.01
886 7 0.00
887 40 0.01
888 64 0.01
889 12 0.00
890 237 0.05
891 429 0.09
892 12 0.00
893 37 0.01
894 4 0.00
895 11 0.00
896 6 0.00
898 3 0.00
899 9 0.00
900 4 0.00
901 141 0.03
902 147 0.03
903 11 0.00
904 159 0.03
905 17 0.00
906 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (867 bp):
ACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
CGAAACGAGCGGGCGGGCGGGCGGACACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTGCCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
TTTCTATTTTTCACATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGCGCG
CACACCCCCCCGCCCCCCCAATCGCCGGAACACCAATACCGCCGGTCAGGTTCTCATGCACGACG
ATGGTGCCCCGAGCGAAAAAAAATACGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAA
CCCTCCGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAGTCAGCCAGAAGGGTAGGATGCGCAAGCCGAGCATCGGTCGGGTCCCCC
TCAGCGTGCTACCGATCTTACT
Found at i:1695436 original size:866 final size:890
Alignment explanation
Indices: 1694380--1696704 Score: 2730
Period size: 866 Copynumber: 2.7 Consensus size: 890
1694370 TTGGTCTGAT
* * *
1694380 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGTGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGC
* * *
1694445 CAGCCAGAGGGGCAGGATGCGCAAGCCAGAGATCGACCGGGTCCCTCTCTGCGTGCTGCCA-ATC
66 CAGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGCCAGATC
* * * * *
1694509 CTGCTGCCACAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGAACTCGGTACGCCTAAGCCA
131 CTGCTGCCACAACCCTTAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
1694574 ACCAACGAAACGAACGGGCGAGCGGGCGGGCACAACGCCAGCTAGAGAGGTGGGATGCGCAAGCC
196 ACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
1694639 GTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCCATATTTCTACCATG-C-ATG-CA-
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-CATATTTCTGCCATGCCAATGCCAT
*
1694700 GTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCTCATGTGAAGTTCATGGC-AGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT-TCATGTGAAGTTCATGGCAAGACGAC
* * *
1694764 TCGTTTTTTATTTTTCACGGATTGTT-AAA-TTTTACGGTTCGAATTTTTTCAAAATTTTTTTAG
389 TCGTTTTTTATTTTTCA-TGATTTTTGAAACTTTTACGGTTCGAATTTTTT-AAAATTTTTTCAG
*
1694827 AAGGAG-TTT-GCCCC-AACTTGGTAGACGTGATCC-TG-TTTTTGTTGGCATGCAC-AAAACAT
452 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGATTTTTGTTGGCATGCACAAAAAAAT
1694886 TCA-CGTAAAAACTCG-AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGA
517 TCAGC-TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
1694948 -ACTTTAATGGCTACTGGCAGCAAACCT-TAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTC
581 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
1695011 TCAAGGTTTGATGAGGGA-AGGGGCCAATATAAGGGCCAAGTACCAG-A-CCATCGCAAATCATG
646 TCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
1695073 TGCGCACA-CACCCC-G-ACCTCAAT-CC-AACCACAATGCCC-GTCAGG-T-TCCGGCGAGGCT
711 TGCGCACACCCCCCCGGCCCCCCAATCCCGAACCCCAATGCCCGGTCAGGTTCTCCGGCGATGCT
* * ** * * *
1695130 CCGGCGATGGTGGCCCGGGCAAAAAACAATGTGGCACCAGCACATGTTCGAGCCCAGTATGCGCA
776 CCGGCGATGGTGCCCCGGGCAAAAAA-AATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCA
* * *
1695195 CCCGGAACCCTCGGGCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
840 CCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
1695246 CTTCGATTGGGAACGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGTGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGC
** * * * * * * * *
1695311 TGGCTAGAGGGGTAGGATGCGCAAGTCGGGGATTGGCCGGGTCCCTCTCTACATGCTG-CAGATC
66 CAGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGCCAGATC
* * * * *
1695375 CTGTTGCCGCAACCCTTGGTCTGGTCCAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 CTGCTGCCACAACCCTTAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
1695440 ATCGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGCAAGTC
196 ACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* * * **
1695505 GTGGATC-AGTAGGGTGGTTGGTGGGTTTAGGCACATCTT-ATATTTTTTCTGTGCCAATGCCAT
261 GTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-
*
1695568 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCGAGACG
324 -TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAG-TTCATGGCAAGACG
* * * * * *
1695633 ACTCGTTTTCTAGTTTTAATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTC
387 ACTCGTTTTTTATTTTTCATGATTTTTGAAAC-TTTTACGGTTC-GAATTTTTTAAAATTTTTTC
* * ** * ** *
1695698 ATAAGGAATTTTCACCCCAAATTTACTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
450 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-ATTTTTGTTGGCATGCACAAAAA
* *
1695763 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTA
514 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
1695828 GACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTC-AATGCTCTTTAAGGGGGTGTGAGT
579 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
1695892 TCTCTGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATC
644 TCTC-GAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
1695957 ATGTGCGCACACCCCCCC-GCCCCCCAATCGCCGGAACCCCAATG-CC-GTC-GG---T-C--AG
708 ATGTGCGCACACCCCCCCGGCCCCCCAATC-CC-GAACCCCAATGCCCGGTCAGGTTCTCCGGCG
* * * * * *
1696012 -TTCT-CGGTGATGG-CCCCCGAGCAAAAAAAA-ATGACACCAGCACATGCCCAAGCCCAACATG
771 ATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAATGTGACACCAGCACATGCCCAAGCCCAGCATG
* * * * * * * *
1696073 TGTACCTGCAACCATCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCATGTG
836 TGCACCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
1696128 CTTAGACTGGGAATGAACTCCGTTTGCTTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGC
* * * * ** *
1696193 CAGCCAGA-GGGTAGGATGCGTAAGTCGGGGATCGGTCGGGTCCCCCTCAACGTGCTGCC-GATC
66 CAGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGCCAGATC
* * *
1696256 CTACTGCCACAACCCTCAGT-TCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
131 CTGCTGCCACAACCCTTAGTCT-GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** ** * *
1696320 AACTGACGAAACGAACGGGCGGGTAGGCGGGCACTACGCCTCCCAAAGAGGCAGGATGCGCAAGC
195 AACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGC
1696385 CGT-G---G-TA-GGT-G--GGT---TTT-GGCACATCTTCATATTTCTGCCATGCCAATGCCAT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA-
* *
1696437 TTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTGTCATGGTAAGACG
324 -TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT-TCATGGCAAGACG
* * * *
1696502 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGCTCGAGATTTTTTTAAAATTTTCT
387 ACTCGTTTTTTATTTTTCATGATTTTTGAAAC-TTTTACGGTTCGA-A-TTTTTTAAAATTTTTT
*
1696567 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CTTGTATTTTTCTTGGCATGCACAAAA
449 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-ATTTTTGTTGGCATGCACAAAA
*
1696631 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGCCCCCA-TTC
513 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
1696695 TAGACACTTT
578 -AGACACTTT
1696705 GATGAGGGAT
Statistics
Matches: 1252, Mismatches: 163, Indels: 85
0.83 0.11 0.06
Matches are distributed among these distances:
864 10 0.01
865 4 0.00
866 256 0.20
867 2 0.00
868 14 0.01
869 226 0.18
870 94 0.08
871 24 0.02
872 3 0.00
873 26 0.02
874 12 0.01
875 7 0.01
876 18 0.01
877 2 0.00
879 16 0.01
880 21 0.02
881 195 0.16
882 138 0.11
883 55 0.04
884 36 0.03
885 36 0.03
886 3 0.00
887 22 0.02
888 6 0.00
889 7 0.01
890 1 0.00
891 4 0.00
892 5 0.00
893 9 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAGC
CAGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGCCAGATC
CTGCTGCCACAACCCTTAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTCATGGCAAGACGACTC
GTTTTTTATTTTTCATGATTTTTGAAACTTTTACGGTTCGAATTTTTTAAAATTTTTTCAGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCCAATCCCGAACCCCAATGCCCGGTCAGGTTCTCCGGCGATGCTCCGGC
GATGGTGCCCCGGGCAAAAAAAATGTGACACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCA
ACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:1696138 original size:26 final size:26
Alignment explanation
Indices: 1696102--1696157 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
1696092 CCGGTCTGAT
1696102 CTTAGACTGGGAATGAACTCCATGTG
1 CTTAGACTGGGAATGAACTCCATGTG
* *
1696128 CTTAGACTGGGAATGAACTCCGTTTG
1 CTTAGACTGGGAATGAACTCCATGTG
1696154 CTTA
1 CTTA
1696158 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATGTG
Found at i:1698677 original size:26 final size:26
Alignment explanation
Indices: 1698648--1698700 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1698638 CCGGTCCGAT
* *
1698648 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
1698674 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
1698700 C
1 C
1698701 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:1701037 original size:874 final size:869
Alignment explanation
Indices: 1696702--1701333 Score: 5269
Period size: 864 Copynumber: 5.3 Consensus size: 869
1696692 TTCTAGACAC
*
1696702 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGC
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
1696767 ACAGCCCCCCCGAGCCCCCCAATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTTCGATGATGC
66 ACA-CCCCCCCG-GCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* * * * * * * *
1696832 TC-CGACGATGGTGGCCCGAGCGAAAAATAATACGACACCAGCACATGCCCGAGCCTAGCATATG
129 TCTAG-CGATGGTGCCCCGGGCAAAAAAAAATGCG-CACCAGCACATGCCCGAGCCCAGCATGTG
* ** * *
1696896 CACCCGCAACCCTCGGTCCGGTCTTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACA
192 CACCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * ** * * * * *
1696961 CACAAAATGAGCGTGCGGGCCCTCAGCCGGCCAGAGGGGCAAGATGCA-TAAGTCGAGGATCGGT
257 CACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATG-AGCAAGCCGGGGATCGAT
* * * ** * *
1697025 CGAGTCCCCTTCAGCGTGCTACCGATCCTGCTGCTGCAACCCTCAGTCCGATCCGATCTTAGATT
321 CGGGTCCCCCTCAGTGTGCT-CTAATCCTGCTGCCGCAACCCTCAGTCCG-TCCGATCTTAGACT
* * * * * * * *
1697090 GGGAATAAACTCCGTATGCCTAAGCCAACTGATGAAACAAGTGGGTGGCAGGTCGGGCACTACGT
384 GGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGC-GGGCGGGCACTACG-
1697155 TCGGCCAGA-AGGC-GGATGCGCAAGCC--GG-T-GA-A--T-G-AGGTGGGTTTAGGCACATCT
447 TCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGTGGTAGGTGGGTTTAGGCACATCT
**
1697209 TCATATTTTCCATGC--TGCC-ATGCCATTTTATAT--CTT-TAAATTCATACAATGGATCCAGT
512 TCATA-TTT-C-TGCTATGCCAATGCCATTTT-TATGGCTTGTAAATTCATACAATGG-TCCCTT
* *
1697268 -AGCCTT-ATGTG-AG-TTCACTGGCAA-ACAACTCGTTCTCTATTTTTCA-GATTTTTGAAAC-
572 AAGCCTTCATGTGAAGTTTCA-TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
**
1697326 TTTTACAATTCGAGATTTTTTTTAAAATTTTTTCAAAA-AAGTTTTGG-CCCAAACTTGGTTAGA
636 TTTTACGGTTCGAGA-TTTTTTTAAAATTTTTTCAAAAGAA-TTTTGGTCCCAAACTTGG-TAGA
* * *
1697389 CGTGATCGCTTGTATTTTTTTTTGGCAATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTAAC
698 CGTGATC-CTTGTA-TTTTTGTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT-AC
* * *
1697454 AGGATTTTGTGACCTACTTGAAAAAAGTGTCCCCGCATTACAGACACTTTAATGGCTACTGGCAG
759 AGGATTTTGTGACC-ATTTGAAAAAAGTGT-CCC-CATTTCAGACACTTTAATGGCTACTGG-AA
*
1697519 GCAAACGCCTGTAAAATCTGCAAATTCTCTTTAA-GGGTGTGA-TTCTCGAGG
820 GCAAA--CCTGTAAAATCT-CAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGG
* * *
1697570 TTTGATTGACGGGATAGGCGGCCAATATAAGGGCCAAGTACCAACAGCCATCGCACATCATGTGC
1 TTTGA-TGA-GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
*** * *
1697635 GCACACCCCCCCAGGCCCATTAATCATCGAAACCCCAATGCCGCCGGTCAGG-T-T-----G-T-
64 GCACACCCCCCC-GGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* * * *
1697691 C-CGA-CGATGGTGCCCCAGGCAAAAAAAAATGCAGCACCAGCACATACCTGAGCCCAGCATGTG
128 CTCTAGCGATGGTGCCCCGGGCAAAAAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTG
* * * *
1697754 CACCCACAACCCTCGATCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
192 CACCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* * * * * *
1697819 CACGAAACGAGCGTGTGGGTGCTCAACCAGCCAGAGGGGTAGGATGCGAAAGCCGGGGATCGATC
257 CACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGAGCAAGCCGGGGATCGATC
* * * * ** *
1697884 GGGTTCCCCTCA-TCGTGCTATCAATCCTGCTACCACAACCCTCAGTTTGGTCCGATCTTAGATT
322 GGGTCCCCCTCAGT-GTGCTCT-AATCCTGCTGCCGCAACCCTCAG-TCCGTCCGATCTTAGACT
* * * *
1697948 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGTGGGCGGGCACTACGC
384 GGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCGGGCACTACGT
* * * * * *
1698013 CAGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCAATTGAGCGGTAGGTGGGTTTA-G-------
448 CGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAG-GTGGTAGGTGGGTTTAGGCACATCT
1698070 TCATATTTCTG-TCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
512 TCATATTTCTGCT-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
1698134 CTTCATGTGAACTTTCATGGCAGGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTA
576 CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* * *
1698199 CAGTTCGAGAATTTTTTAAAATTTTTTCAAAAAGAGTTTTGGTCCCAAACTTGGTAGACGTGATC
641 CGGTTCGAGATTTTTTTAAAATTTTTTC-AAAAGAATTTTGGTCCCAAACTTGGTAGACGTGATC
* *
1698264 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAGGATTTTGTG
705 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
* *
1698329 ACCATTTGAAAAAAGTGT-CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
770 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAAT
1698393 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
835 CTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGG
* * * *
1698429 TTTGATGAGCGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCATGTGCGC
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* *
1698494 ACACCCCCCCGGCCCCCCAATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCT-
66 ACACCCCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * * *
1698558 TCAGCGATGGTACCTCGGGCAAAAAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCA
131 T-AGCGATGGTGCCCCGGGCAAAAAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCA
* *
1698623 CCTGCATCCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGAAAT
194 CCCGCAACCCTCGATCCGGTCCGATC------T-----T--A----G-A--C-T-G---GG-AAT
*
1698688 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCA
233 GAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCA
* ** * *
1698753 GGAT-ACGCAAGCCGGGGATC-AGTCAGGG-CCCCCTCAGTGTCCTGCCGATCCTACTGCCACAA
298 GGATGA-GCAAGCCGGGGATCGA-TC-GGGTCCCCCTCAGTGTGCT-CTAATCCTGCTGCCGCAA
* *
1698815 CTCTCGGTCC-TACCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCAACCGACGAAA
359 CCCTCAGTCCGT-CC-GATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAA
* ** *
1698878 CGAGCAGGCGAGTGGGCGGGCGGGGGGGCACTACACCGGCCATAGAGGCAGGATGCGCAAGCCGT
421 C--G-A-GC----GGGC-GGCGGGCGGGCACTACGTCGGCCAGAGAGGCAGGATGCGCAAGCCGT
* *
1698943 GGATCG--A-----TAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTT
477 GGATCGATAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCATTTTT
* * *
1699001 ATGGCTTGTAAATTCAGACAAT-GTCCCTTGAGCCTTCATGTGAAGTTTCATGGCAAGACAACTC
542 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* *
1699065 GTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGA
607 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA-A
* * * * * * * *
1699130 AGGATTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TCTAGCATTCATAAAAAAA
671 AAGAATTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAA
*
1699194 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGA
735 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
1699259 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGATTTC
800 CACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC
1699324 TCGAGG
864 TCGAGG
* * * *
1699330 ATTGATAAGGGAGAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGC
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
1699395 GCA-CCCCCCGGCCCCCCAATC-TCCGGAACCCTAGTGCCGTCGGTCGGGTTCTCCGACGATGCT
66 ACACCCCCCCGGCCCCCCAATCGT-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
** ** ** * **
1699458 CCGGCGATGGCACCCCGGG-TGAAAAAAATACGGCACCAGCACATGCTTGAGCCCAGCATGTGCA
130 CTAGCGATGGTGCCCCGGGCAAAAAAAAATGC-GCACCAGCACATGCCCGAGCCCAGCATGTGCA
* * * * * * *
1699522 CCCGTAACCCTCGGTCC-ATCTGATCTTAGACTAGGAATGAACTCTGTAAGCTTAAGTCAACCCA
194 CCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
* * * * * * * *
1699586 CGAAACGAGCGTGCGAGCGTTCAGCCGGCAAGAGGGGCAGGATGGGTAAACTGGGGATCGATCGG
259 CGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGAGCAAGCCGGGGATCGATCGG
* *
1699651 GT-CCCC-C-----GCT-T-A-CCGTGCTGCCGCAACCCTCAGTCCAATCTGATCTTAGACTGGG
324 GTCCCCCTCAGTGTGCTCTAATCC-TGCTGCCGCAACCCTCAGTCC-GTCCGATCTTAGACTGGG
* * *
1699706 AATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAAGTGGGCGGGCACTATGTCGG
387 AATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCGGGCACTACGTCGG
** * * *
1699771 CCAGAGAGAAAGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCA
451 CCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCA
*
1699836 TATTTCTGCCATGCCAAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
515 TATTTCTGCTATGCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
1699901 CATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
579 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * * *
1699966 TTCGAGGTTTTTTTAAAATTTTTTCGAAAAGAGTTTTGGTGCCAAACATGGTAGATGTGATCCTT
644 TTCGAGATTTTTTTAAAATTTTTTC-AAAAGAATTTTGGTCCCAAACTTGGTAGACGTGATCCTT
*
1700031 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGTTTTTGTGACC
708 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
*
1700096 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTC
773 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTC
1700161 AAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGG
838 AAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGG
*
1700194 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
1700259 ACA-CCCCCCGGCCCCCCCAATCGTCGGAACCTCAATGCTGTCGGTTAGGTTCTCCGACAATGCT
66 ACACCCCCCCGG-CCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * * * * *
1700323 CTAGCGATGGTGCCCCGGCCGAAAAAAAATGTGCCACCAGCACATGCCCAAGCCCAACATCTGCA
130 CTAGCGATGGTGCCCCGGGCAAAAAAAAATGCG-CACCAGCACATGCCCGAGCCCAGCATGTGCA
** * * * *
1700388 CCTACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATACGCCTAAGTCAAACCA
194 CCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
* * * * * *
1700453 CGGAATGAGCGTACGGGTGCTCAGCCGTCCAGAGGGGCAGGATGAGCAAGCCCGGGATCGATCTG
259 CGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGAGCAAGCCGGGGATCGATCGG
* * *
1700518 GTCCCCCTCAGTGTGCTGCTAATCCTGCTGCCGTAACCCTCGGTCCAGTCCAATCTTAGACTGGG
324 GTCCCCCTCAGTGTGCT-CTAATCCTGCTGCCGCAACCCTCAGTCC-GTCCGATCTTAGACTGGG
* * * * * *
1700583 AATGAACTCTGTATACCGAAGCCAACCAACGAAATGATCGGGCGGCCGGGTGGGCACTACGTCGG
387 AATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGCGGGCACTACGTCGG
*
1700648 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
451 CCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCA
*
1700713 TATTTCTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
515 TATTTCTGCTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* *
1700778 ATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTACATGATTTTTGAAACTTTTTACGGT
580 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
* * *
1700843 TCAAGATTTTTTT-AAATTTTTTCAGAAGCAATTTTCG-CCCAAACTTGGTAGACGTGATCCTTG
645 TCGAGATTTTTTTAAAATTTTTTCAAAAG-AATTTTGGTCCCAAACTTGGTAGACGTGATCCTTG
* * * *
1700906 TATTTTTGTGGGCATGCATAAAAAAGTTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACCA
709 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
* *
1700971 TTTGAAAAAAGTGTCCCCATTTCAGATATTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCA
774 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCA
1701036 AATGCTCTTTAAGGGTGTGTGAGTTCTCGAGG
839 AATGCTCTTTAAGGG-GTGTGAGTTCTCGAGG
* * *
1701068 TTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACAAGCACCGATCGCACATCATGTGCGC
1 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
1701133 ACACCCCCCCGACCCCCCCAATTGTCGGAATCCCAATGCCGCTGGTCAGGTTCTCCGAC---G--
66 ACACCCCCCCG-GCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * *
1701193 -T-----TGGTGCCCTGGGCAAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCA
130 CTAGCGATGGTGCCCCGGGCAAAAAAAAATG-CGCACCAGCACATGCCCGAGCCCAGCATGTGCA
** * **
1701252 CCCGCAACCCTCGATCCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGG
194 CCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
* *
1701317 CCAAACGAGCGGGCGGG
259 CGAAACGAGCGTGCGGG
1701334 CAAGATTTTT
Statistics
Matches: 3228, Mismatches: 384, Indels: 308
0.82 0.10 0.08
Matches are distributed among these distances:
854 46 0.01
856 46 0.01
857 79 0.02
858 277 0.09
859 40 0.01
860 37 0.01
861 22 0.01
862 111 0.03
863 74 0.02
864 485 0.15
865 103 0.03
866 83 0.03
867 203 0.06
868 47 0.01
869 66 0.02
870 58 0.02
871 7 0.00
872 79 0.02
873 6 0.00
874 245 0.08
875 62 0.02
876 125 0.04
877 163 0.05
878 4 0.00
880 2 0.00
881 1 0.00
884 1 0.00
885 2 0.00
887 2 0.00
888 1 0.00
889 1 0.00
891 1 0.00
892 7 0.00
893 170 0.05
894 5 0.00
896 1 0.00
897 2 0.00
898 6 0.00
899 55 0.02
900 267 0.08
901 236 0.07
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (869 bp):
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
TAGCGATGGTGCCCCGGGCAAAAAAAAATGCGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
CGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGAGCAAGCCGGGGATCGATCGGGT
CCCCCTCAGTGTGCTCTAATCCTGCTGCCGCAACCCTCAGTCCGTCCGATCTTAGACTGGGAATG
AACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGGGCACTACGTCGGCCAGA
GAGGCAGGATGCGCAAGCCGTGGATCGATAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TGCTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA
TTTTTTTAAAATTTTTTCAAAAGAATTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGTGTGAGTTCTCGAGG
Found at i:1705129 original size:15 final size:14
Alignment explanation
Indices: 1705090--1705143 Score: 67
Period size: 15 Copynumber: 3.9 Consensus size: 14
1705080 CGCTCTAGGC
1705090 TTTTT-TTTATTTT
1 TTTTTATTTATTTT
*
1705103 TATTTA-TTATTTGT
1 TTTTTATTTATTT-T
1705117 TTTTTATTTATTTAT
1 TTTTTATTTATTT-T
1705132 TTTTTATTTATT
1 TTTTTATTTATT
1705144 AGATTAGGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
13 10 0.29
14 6 0.17
15 19 0.54
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (14 bp):
TTTTTATTTATTTT
Found at i:1705137 original size:11 final size:11
Alignment explanation
Indices: 1705090--1705143 Score: 60
Period size: 11 Copynumber: 5.1 Consensus size: 11
1705080 CGCTCTAGGC
1705090 TTTTT-TTTA-
1 TTTTTATTTAT
1705099 TTTTTATTTAT
1 TTTTTATTTAT
* *
1705110 TATTTGTTT-T
1 TTTTTATTTAT
1705120 TTATTTATTTAT
1 TT-TTTATTTAT
1705132 TTTTTATTTAT
1 TTTTTATTTAT
1705143 T
1 T
1705144 AGATTAGGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
9 5 0.14
10 6 0.16
11 23 0.62
12 3 0.08
ACGTcount: A:0.17, C:0.00, G:0.02, T:0.81
Consensus pattern (11 bp):
TTTTTATTTAT
Found at i:1705159 original size:4 final size:4
Alignment explanation
Indices: 1705101--1705143 Score: 56
Period size: 4 Copynumber: 11.5 Consensus size: 4
1705091 TTTTTTTATT
*
1705101 TTTA TTTA -TTA TTTG TTT- TTTA TTTA TTTA TTT- TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1705144 AGATTAGGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
3 9 0.26
4 26 0.74
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (4 bp):
TTTA
Found at i:1705185 original size:5 final size:5
Alignment explanation
Indices: 1705175--1705261 Score: 60
Period size: 5 Copynumber: 17.6 Consensus size: 5
1705165 CTTTTTTACC
* *
1705175 TTTAT TTTAT TTTA- -TTAT TTTATT TTTGT TTTAAT TTT-T TTT-T TATTTT
1 TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTT-AT TTTAT TTTAT T-TTAT
*
1705224 TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT TTTAT TTT
1 TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1705262 CTTTAAATAA
Statistics
Matches: 67, Mismatches: 5, Indels: 20
0.73 0.05 0.22
Matches are distributed among these distances:
3 6 0.09
4 6 0.09
5 39 0.58
6 12 0.18
7 4 0.06
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:1705261 original size:13 final size:12
Alignment explanation
Indices: 1705175--1705261 Score: 81
Period size: 12 Copynumber: 7.1 Consensus size: 12
1705165 CTTTTTTACC
1705175 TTTATTTTATTT
1 TTTATTTTATTT
1705187 TATTATTTTATTT
1 T-TTATTTTATTT
*
1705200 TTGT-TTTAATTT
1 TT-TATTTTATTT
1705212 TTT-TTTTATTTT
1 TTTATTTTA-TTT
*
1705224 TTTATTTTCA-CT
1 TTTATTTT-ATTT
*
1705236 TTTATTTTGTTT
1 TTTATTTTATTT
1705248 TATTATTTTATTT
1 T-TTATTTTATTT
1705261 T
1 T
1705262 CTTTAAATAA
Statistics
Matches: 62, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
11 5 0.08
12 28 0.45
13 28 0.45
14 1 0.02
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTATTTTATTT
Found at i:1705262 original size:30 final size:30
Alignment explanation
Indices: 1705175--1705262 Score: 106
Period size: 30 Copynumber: 2.9 Consensus size: 30
1705165 CTTTTTTACC
**
1705175 TTTATTTTATTTTATTATTTTATTTT-TGT
1 TTTATTTTATTTTATTATTTTATTTTCACT
* *
1705204 TTTAATTTTTTTTTTATTTTTTTATTTTCACT
1 TTT-A-TTTTATTTTATTATTTTATTTTCACT
*
1705236 TTTATTTTGTTTTATTATTTTATTTTC
1 TTTATTTTATTTTATTATTTTATTTTC
1705263 TTTAAATAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 3 0.06
30 22 0.44
31 21 0.42
32 4 0.08
ACGTcount: A:0.16, C:0.03, G:0.02, T:0.78
Consensus pattern (30 bp):
TTTATTTTATTTTATTATTTTATTTTCACT
Found at i:1705408 original size:118 final size:118
Alignment explanation
Indices: 1705279--1705733 Score: 625
Period size: 118 Copynumber: 3.8 Consensus size: 118
1705269 TAAAAATCAA
* * * *
1705279 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCGAAAAAAG
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAA
* *
1705344 GGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC
66 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
*
1705397 AAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAA
* *
1705462 GGTTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCTTGAAAATCAAAGTTTCC
66 GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
*
1705515 -AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCCAAAAAA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-C-AAAAA
* * * *
1705579 AAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTC
63 AAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
* * * *
1705633 AAAAAATCAATTTTTAAGGAAAAGTTGAAAGTATCAATCTTCCTCT-AAATTAAAGTTTC-AAAA
1 AAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAAATAAAATTTCAAAAA
* *
1705696 GAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
63 AAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
1705734 CTGCGCAAGG
Statistics
Matches: 308, Mismatches: 21, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
117 85 0.28
118 122 0.40
119 11 0.04
120 52 0.17
121 37 0.12
122 1 0.00
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (118 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAA
GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
Found at i:1705543 original size:58 final size:57
Alignment explanation
Indices: 1705279--1705733 Score: 563
Period size: 59 Copynumber: 7.7 Consensus size: 57
1705269 TAAAAATCAA
* *
1705279 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
** * * *
1705336 GAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC
1 -AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-C
*
1705397 AAAAAATATTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
1705454 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCTTGAAAATCAAAGTTTC
1 AAAAAATA--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
* *
1705514 CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-C
* *
1705573 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 ---AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
1705633 AAAAAATCAATTTTTAAGGAAAAGTTGAAAGTATCAATCTTCCTCT-AAATTAAAGTTTC
1 AAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAAATAAAATTTC
1705692 AAAAGAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAA-AATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
1705734 CTGCGCAAGG
Statistics
Matches: 350, Mismatches: 32, Indels: 30
0.85 0.08 0.07
Matches are distributed among these distances:
57 16 0.05
58 90 0.26
59 161 0.46
60 30 0.09
61 7 0.02
62 46 0.13
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:1705636 original size:179 final size:172
Alignment explanation
Indices: 1705278--1705733 Score: 626
Period size: 179 Copynumber: 2.6 Consensus size: 172
1705268 ATAAAAATCA
* * *
1705278 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCGAAAAAA
1 AAAAAAA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAAGTTTC-AAAAAA
** * *
1705343 GGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCCAAAAAATATTT
63 -TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCCAAAAAATATTT
1705408 TTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAAATTTC
127 TTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* *
1705454 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCTTGAAAATCAAAGTTTCCAAAA
1 AAAAAAAA--TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT-AAAGTTTCAAAAA
1705519 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCCAAAAAAAAATA
62 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC---AAAAAATA
* * *
1705584 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
124 TTTTTGAGGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * *
1705633 AAAAAATCAATTTTTAAGGAAAAGTTGAAAGTATCAATCTTCCTCTAAATTAAAGTTTCAAAAGA
1 AAAAAA--AATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAATAAAGTTTCAAAA-A
1705698 ATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
62 ATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
1705734 CTGCGCAAGG
Statistics
Matches: 251, Mismatches: 18, Indels: 19
0.87 0.06 0.07
Matches are distributed among these distances:
175 1 0.00
176 56 0.22
177 42 0.17
178 19 0.08
179 130 0.52
180 1 0.00
181 2 0.01
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (172 bp):
AAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAGTTTCAAAAAATAT
TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCCAAAAAATATTTTTGA
GGAAAAGTTAAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:1705668 original size:27 final size:27
Alignment explanation
Indices: 1705638--1705731 Score: 66
Period size: 27 Copynumber: 3.3 Consensus size: 27
1705628 TTTTCAAAAA
1705638 ATCAATTTTTAAGGAAAAGTTGAAAGT
1 ATCAATTTTTAAGGAAAAGTTGAAAGT
*** * *
1705665 ATCAATCTTCCTCTAAATTAAAGTTTCAAAAGA
1 ATCAAT-TT--T-TAAGGAAAAG-TT-GAAAGT
*
1705698 AT--ATTTTTAGGGAAAAGTTGAAAGT
1 ATCAATTTTTAAGGAAAAGTTGAAAGT
1705723 ATCAATTTT
1 ATCAATTTT
1705732 CCCTGCGCAA
Statistics
Matches: 48, Mismatches: 11, Indels: 16
0.64 0.15 0.21
Matches are distributed among these distances:
25 6 0.12
26 2 0.04
27 17 0.35
28 3 0.06
30 3 0.06
31 9 0.19
32 2 0.04
33 6 0.12
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (27 bp):
ATCAATTTTTAAGGAAAAGTTGAAAGT
Found at i:1715922 original size:300 final size:302
Alignment explanation
Indices: 1715363--1715953 Score: 1087
Period size: 300 Copynumber: 2.0 Consensus size: 302
1715353 AGCAGTTAAA
1715363 TTTCATAAAAGAAAAGAGATTGACTACACTGTGTCATAGTCAGCTATATCAAAAAAGAATGATGA
1 TTTCATAAAAGAAAAGAGATTGACTACACTGTGTCATAGTCAGCTATATCAAAAAAGAATGATGA
1715428 GGGCTCATGATAAGAAGATTCGACCCCGTTGCTTTCGAGAAGGAGAGTTGGTTTTGAAAAGAATT
66 GGGCTCATGATAAGAAGATTCGACCCCGTTGCTTTCGAGAAGGAGAGTTGGTTTTGAAAAGAATT
* *
1715493 CTCCCAATCTAGCACGATAGTAGAGGAAAATGGACTCCGAATTGGGAAGGGCCGTATGTGGTGAG
131 CTCCCAATCCAGCACGATAGTAGAGGAAAATGGACTCCGAATTGGGAAGGGCCATATGTGGTGAG
1715558 ACGAGCTTTTTCAAGTAGAGCGCTGATACTGACTGAGATGGATGGAAATGATTTACCCCATCCTA
196 ACGAGCTTTTTCAAGTAGAGCGCTGATACTGACTGAGATGGATGGAAATGATTTACCCCATCCTA
1715623 TAAATTCTAATGCTGTGAAGAAATACAATGCAGTCAATCTCT
261 TAAATTCTAATGCTGTGAAGAAATACAATGCAGTCAATCTCT
* *
1715665 TTTCATAAAAGAAAA-AGATTGACTGCACTGTGTCATGGTCAGCTATATCAAAAAAGAATGATGA
1 TTTCATAAAAGAAAAGAGATTGACTACACTGTGTCATAGTCAGCTATATCAAAAAAGAATGATGA
1715729 GGGCTCATGATAAGAAGATTCGACCCCGTTGCTTTCGAG-AGGAGAGTTGGTTTTGAAAAGAATT
66 GGGCTCATGATAAGAAGATTCGACCCCGTTGCTTTCGAGAAGGAGAGTTGGTTTTGAAAAGAATT
1715793 CTCCCAATCCAGCACGATAGTAGAGGAAAATGGACTCCGAATTGGGAAGGGCCATATGTGGTGAG
131 CTCCCAATCCAGCACGATAGTAGAGGAAAATGGACTCCGAATTGGGAAGGGCCATATGTGGTGAG
* * *
1715858 ACGGGCTTTTTCAGGTGGAGCGCTGATACTGACTGAGATGGATGGAAATGATTTACCCCATCCTA
196 ACGAGCTTTTTCAAGTAGAGCGCTGATACTGACTGAGATGGATGGAAATGATTTACCCCATCCTA
* *
1715923 TAAATTCTGATGCTGTGAAGAAATACTATGC
261 TAAATTCTAATGCTGTGAAGAAATACAATGC
1715954 TTGAAAAAAT
Statistics
Matches: 280, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
300 179 0.64
301 86 0.31
302 15 0.05
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (302 bp):
TTTCATAAAAGAAAAGAGATTGACTACACTGTGTCATAGTCAGCTATATCAAAAAAGAATGATGA
GGGCTCATGATAAGAAGATTCGACCCCGTTGCTTTCGAGAAGGAGAGTTGGTTTTGAAAAGAATT
CTCCCAATCCAGCACGATAGTAGAGGAAAATGGACTCCGAATTGGGAAGGGCCATATGTGGTGAG
ACGAGCTTTTTCAAGTAGAGCGCTGATACTGACTGAGATGGATGGAAATGATTTACCCCATCCTA
TAAATTCTAATGCTGTGAAGAAATACAATGCAGTCAATCTCT
Found at i:1717061 original size:42 final size:42
Alignment explanation
Indices: 1717014--1717110 Score: 176
Period size: 42 Copynumber: 2.3 Consensus size: 42
1717004 CATGTTTGTC
*
1717014 AAGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTA
1 AAGGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTA
1717056 AAGGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTA
1 AAGGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTA
*
1717098 GAGGAGCAATTTA
1 AAGGAGCAATTTA
1717111 TTTTGCCTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 53 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32
Consensus pattern (42 bp):
AAGGAGCAATTTACTTTCCAAAAGTCATGGTGCCTCTGTTTA
Found at i:1717171 original size:41 final size:41
Alignment explanation
Indices: 1717114--1717257 Score: 184
Period size: 41 Copynumber: 3.5 Consensus size: 41
1717104 CAATTTATTT
*
1717114 TGCCTTTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGA
1 TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGA
* *
1717155 TGCCTCTGTTTAGAGGAGCAATTTACTTTTCC-AAGTCATGG
1 TGCCTCTGTTTAGAGGAGCAATTTAC-TTTCCAAAGTCGTGA
* * *
1717196 TGCCTCTATTTAGAGGAGCAATTTATGTTTCTCAACGTCGTTGA
1 TGCCTCTGTTTAGAGGAGCAATTTA-CTTTC-CAAAGTCG-TGA
1717240 -GCCTCTGTTTAGAGGAGC
1 TGCCTCTGTTTAGAGGAGC
1717258 TTTGGTCAAA
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
41 60 0.67
42 6 0.07
43 21 0.24
44 2 0.02
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (41 bp):
TGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGA
Found at i:1717281 original size:12 final size:11
Alignment explanation
Indices: 1717264--1717322 Score: 66
Period size: 12 Copynumber: 5.0 Consensus size: 11
1717254 GAGCTTTGGT
1717264 CAAAAACAAAAA
1 CAAAAA-AAAAA
1717276 CAAAAAAAAAA
1 CAAAAAAAAAA
1717287 CACAAAAAAAAA
1 CA-AAAAAAAAA
1717299 CACAAAAAACAAA
1 CA-AAAAAA-AAA
1717312 -AAAACAAAAAA
1 CAAAA-AAAAAA
1717323 ATGAAAATGT
Statistics
Matches: 44, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
11 13 0.30
12 28 0.64
13 3 0.07
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (11 bp):
CAAAAAAAAAA
Found at i:1717293 original size:9 final size:8
Alignment explanation
Indices: 1717271--1717323 Score: 65
Period size: 8 Copynumber: 6.6 Consensus size: 8
1717261 GGTCAAAAAC
1717271 AAAAACAA
1 AAAAACAA
1717279 AAAAA-AA
1 AAAAACAA
*
1717286 ACACAA-AA
1 A-AAAACAA
1717294 AAAAACACA
1 AAAAACA-A
1717303 AAAAACAA
1 AAAAACAA
1717311 AAAAACAA
1 AAAAACAA
1717319 AAAAA
1 AAAAA
1717324 TGAAAATGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
7 6 0.15
8 26 0.65
9 8 0.20
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAACAA
Found at i:1717312 original size:29 final size:28
Alignment explanation
Indices: 1717265--1717323 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
1717255 AGCTTTGGTC
1717265 AAAAACAAAAACAAAAAAAAAACACAAAA
1 AAAAACAAAAACAAAAAAAAAACA-AAAA
*
1717294 AAAAACACAAAA-AACAAAAAAACAAAAA
1 AAAAACA-AAAACAAAAAAAAAACAAAAA
1717322 AA
1 AA
1717324 TGAAAATGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 6 0.21
29 18 0.64
30 4 0.14
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (28 bp):
AAAAACAAAAACAAAAAAAAAACAAAAA
Found at i:1717500 original size:6 final size:6
Alignment explanation
Indices: 1717489--1717514 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
1717479 TTATTTTGTA
1717489 TTATTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TT
1717515 TTATATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTATTT
Found at i:1717657 original size:19 final size:19
Alignment explanation
Indices: 1717611--1717664 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
1717601 TTATATGTAT
*
1717611 TTTATTTATATAGTTATATA
1 TTTATTTAT-TAATTATATA
1717631 TTTA-TTATTACATTATA-A
1 TTTATTTATTA-ATTATATA
*
1717649 TTTATTTATTTATTAT
1 TTTATTTATTAATTAT
1717665 TTTTTTATCT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
18 12 0.40
19 14 0.47
20 4 0.13
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
TTTATTTATTAATTATATA
Found at i:1717716 original size:43 final size:42
Alignment explanation
Indices: 1717648--1717730 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 42
1717638 TTACATTATA
1717648 ATTTATTTATTTATTATTTTTTTATCT-TGTAATATTTTTTGG
1 ATTTATTTATTTATTATTTTTTTATCTGT-TAATATTTTTTGG
*
1717690 ATTTATCTTA-TT-TTATTTTTGATTATCTGTTATTATTTTTT
1 ATTTAT-TTATTTATTATTTTT--TTATCTGTTAATATTTTTT
1717731 TATTTTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
41 8 0.22
42 8 0.22
43 19 0.53
44 1 0.03
ACGTcount: A:0.20, C:0.04, G:0.06, T:0.70
Consensus pattern (42 bp):
ATTTATTTATTTATTATTTTTTTATCTGTTAATATTTTTTGG
Found at i:1718631 original size:5 final size:5
Alignment explanation
Indices: 1718621--1718711 Score: 68
Period size: 5 Copynumber: 18.6 Consensus size: 5
1718611 CCTTTTTACC
* * *
1718621 TTTAT TTTA- -TTAT TTTAT TTTATT TTTGT TTTACT TTT-C TTTAT TTTAC
1 TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTTA-T TTTAT TTTAT TTTAT
*
1718670 TTT-T TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT TTTAT TTT
1 TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1718712 CTTTAAATAA
Statistics
Matches: 68, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
3 6 0.09
4 6 0.09
5 42 0.62
6 10 0.15
7 4 0.06
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:1718669 original size:15 final size:14
Alignment explanation
Indices: 1718621--1718715 Score: 76
Period size: 13 Copynumber: 6.9 Consensus size: 14
1718611 CCTTTTTACC
*
1718621 TTTATTTTA-TTAT
1 TTTATTTTACTTTT
1718634 TTTATTTTA---TT
1 TTTATTTTACTTTT
*
1718645 TTTGTTTTACTTTT
1 TTTATTTTACTTTT
1718659 CTTTATTTTACTTTT
1 -TTTATTTTACTTTT
1718674 TTTATTTTCACTTTTAT
1 TTTATTTT-AC-TTT-T
* *
1718691 TTTGTTTTA-TTAT
1 TTTATTTTACTTTT
1718704 TTTATTTT-CTTT
1 TTTATTTTACTTT
1718716 AAATAAAAAT
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
11 9 0.13
13 19 0.28
14 12 0.18
15 15 0.22
16 4 0.06
17 8 0.12
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (14 bp):
TTTATTTTACTTTT
Found at i:1718704 original size:39 final size:39
Alignment explanation
Indices: 1718622--1718716 Score: 104
Period size: 39 Copynumber: 2.4 Consensus size: 39
1718612 CTTTTTACCT
* * * *
1718622 TTATTTTATTATTTTATTTTATTTTTGTTTTACTTTTCT
1 TTATTTTATTTTTTTATTTTACTTTTATTTTACTTTTCA
*
1718661 TTATTTTACTTTTTTTATTTTCACTTTTATTTT-GTTTT-A
1 TTATTTTA-TTTTTTTATTTT-ACTTTTATTTTACTTTTCA
1718700 TTATTTTATTTTCTTTA
1 TTATTTTATTTT-TTTA
1718717 AATAAAAATC
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
38 4 0.08
39 20 0.42
40 15 0.31
41 9 0.19
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (39 bp):
TTATTTTATTTTTTTATTTTACTTTTATTTTACTTTTCA
Found at i:1718788 original size:59 final size:59
Alignment explanation
Indices: 1718716--1719125 Score: 526
Period size: 59 Copynumber: 6.9 Consensus size: 59
1718706 TATTTTCTTT
* *
1718716 AAATAAAA-ATCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA
*** * *
1718774 AAATAAAATTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGA
1 AAATAAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA
* *
1718833 AAATCAAAGTTTCCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 AAAT-AAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA
* * *
1718893 AAATCAAAGTTTC--CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 AAAT-AAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA
*
1718951 AAATCAAAATTTGCAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAAT-AAAATTT-C-AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA
* * * *
1719013 AAATAAATTTTCAAAAAATCA-ATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT-A
1 AAATAAAATTTCAAAAAA-AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT-TGA
* * * *
1719072 AATTAAAGTTTC-AAAAGAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATAAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1719126 CTACGCAAGA
Statistics
Matches: 312, Mismatches: 31, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
57 1 0.00
58 97 0.31
59 98 0.31
60 64 0.21
61 6 0.02
62 46 0.15
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (59 bp):
AAATAAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA
Found at i:1718939 original size:58 final size:58
Alignment explanation
Indices: 1718729--1719125 Score: 518
Period size: 58 Copynumber: 6.7 Consensus size: 58
1718719 TAAAAATCAA
* * *
1718729 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
*
1718786 AAAAAA-AGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC
1 AAAAAATA---TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTT-C
*
1718847 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
1 -AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
* *
1718906 CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTGC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTT-C
* * *
1718965 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
1 ---AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
* *
1719025 AAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT--AAATTAAAGTTTC
1 AAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TGAAAATCAAAGTTTC
1719084 AAAAGAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAA-AATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
1719126 CTACGCAAGA
Statistics
Matches: 306, Mismatches: 17, Indels: 33
0.86 0.05 0.09
Matches are distributed among these distances:
56 1 0.00
57 14 0.05
58 89 0.29
59 84 0.27
60 58 0.19
61 7 0.02
62 52 0.17
63 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
Found at i:1723429 original size:876 final size:873
Alignment explanation
Indices: 1720207--1723538 Score: 4424
Period size: 878 Copynumber: 3.8 Consensus size: 873
1720197 CTCGTTTTCT
* *
1720207 ATTTGAAAAAAGTGTCCCCATTTCACACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTC
1 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-
* * *
1720272 CATATGCCTCTTT-AGGGGGTG-GAGTTCTCGAGGTTTTGATGAGGGATAGGGGGCCAATATAAG
65 CAAATG-CTCTTTAAGGGGGTGTGAGTTCTTGA-GATTTGATGAGGGATAGGGGGCCAATATAAG
* * * ** *
1720335 GGCCAAGTACCAGCACACATCACACATCATGTGCGCACACCCCCCCGGCCCCCCAATCACCAGAA
128 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCGG-CCCCCAATCGTCGGAA
* * * * * * * * * ** *
1720400 CCCAATTGCCGCCTGTCAGGTTCTCTGGCGATGCTCCGGCGTTGGTGGCCTGGGTGAAAAACAAT
192 CCCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATAGTGCCCCGAGCAAAAAAAAAT
** * * * * * * *
1720465 GTGGCACCAGCACATGCTCGAGCCCAGCATGTGCA-CCAGCAACCCTCAGTCTGGTCTTATCCTA
257 ACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCA-CAACCCTCGGTCCGATCTGATCTTA
* * * * * * * * *
1720529 GACTGGTAATGAACTTCGTATGCCTATGTCAACTCACGAAACGAACGTGCGGGTGCTCAACCGGC
321 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAACCAGC
* * * ** *
1720594 CAGAGGGGCAGGATGCGTAAACCGGGGATCGG-CTGAGTCCCCCTCAATGTGCTGCCGATCCT--
386 CAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCAGCGTGCTACCGATCCTAC
* *
1720656 T--G-----CT-G-TC---C-GATCTTAGACATTG-AATGAACTCTGTATGCCTAAGCCAACCGA
450 TACGCAACCCTCGATCTGTCTGATCTTAGAC-TAGCAATGAACTCCGTATGCCTAAGCCAACCGA
* * * *
1720707 CGAAACGAAG-GGGC-GACCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGAAGCGCAAGCCATG
514 CGAAACG-AGCGGGCGGA-CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
*
1720770 GATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
577 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* *
1720835 ATGACTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
642 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
** *
1720900 GTTTTCTATTTTGAACGATTTTTGAAACTGTTTACGGTTCGGGATTTTTTT-AAATTTTTTCA-A
707 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGA
** * * * * *
1720963 AAGGAGTTTTGTACCCAAACATGGTAGACGTGATCTTTGTA-TTTTTTGGGCATGCACAAAAACA
772 AA-GAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
* *
1721027 TTCAGCTAAAAATTCGAAGTGTATAGGATTTTGTGACC
836 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
* *
1721065 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGACAGCAAACCTGTAAAATCTC
1 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
1721130 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGC
66 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * * *
1721195 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCAGCCCCCCCAAACGTCGAAACCC
131 CAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCG-GCCCCCAATCGTCGGAACCC
* * * * * ** * *
1721259 TATTGCCGTCGGTCAGGTTCTCCAATGATGCTATGGCGATGGTGCCCCGGGCAAAAAAAAATACG
195 AAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATAGTGCCCCGAGCAAAAAAAAATACG
* * * * *
1721324 ACACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCCGATCTTAGACT
260 GCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCGGTCCGATCTGATCTTAGACT
* * * * * *
1721389 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAATGAGCGTATGGGCGCTTAGCCGGGCAGA
325 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAACCAGCCAGA
* ** *
1721454 GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTTCCCCTCTA-CGTGCTGTCGATCCTGCTAAC
390 GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC-AGCGTGCTACCGATCCTACT-AC
** * *
1721518 TTAACCCTCGATCCAGTCT-AGTCTTAGACTAGCAATGAACTCCATATGCCTAAGCCAACCGACG
453 GCAACCCTCGAT-CTGTCTGA-TCTTAGACTAGCAATGAACTCCGTATGCCTAAGCCAACCGACG
** *
1721582 AAACGAGCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATC
516 AAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* * *
1721647 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGTCATGCCAATTCCATTTTTATGG
581 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
* * *
1721712 CTTGTAAATTCATACAATGGTCCCTTAAGTCTTAATGTGTAGTTTCATGGCAAGACGACTCGTTT
646 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
1721777 TCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCAGGATTTTTTTAAAATTTTCTCAGAAGGA
711 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAAGA
* * * *
1721842 TTTTTAGCCCCAAACTTGATAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAG
776 GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
* * *
1721907 CTAAAAACTAGAAGTGTACAAGATTTTGTGACG
841 CTAAAAACTCGAAGTGTACAGGATTTTGTGACC
*
1721940 ATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
1 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
1722004 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGC
66 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * ** * **
1722069 CAAGTACCAGCACCCAGCGCACATCATTTGCGCACATCCCTTTCGGCACCTTCAATCACCGGAAC
131 CAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCC-CCCGGC-CC-CCAATCGTCGGAAC
* * * **
1722134 CCCAATGCCGCCAGTCAGGTTCACCGACGATGCTCCAACGATAGTGCCCC-AGGCAAAAAAAAAT
193 CCAAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATAGTGCCCCGA-GCAAAAAAAAA-
* * * *
1722198 TGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCAGCCACAACCCTCGGTCCGATTTGATGTTA
256 TACGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCGGTCCGATCTGATCTTA
** * *
1722263 GACTGGGAATGAACTCTTTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAGCTAGC
321 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAACCAGC
* * * *
1722328 CAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGAGTCCCCCTCAGTGTACTACCGATCCTCAT
386 CAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTACCGATCCT-A-
* * * * *
1722393 GTA-GCAACCATC-AGTCCTATCTGATCTTAGACTAGCAATGAACTCTGTATGCCTAAGCCAACT
449 CTACGCAACCCTCGA-T-CTGTCTGATCTTAGACTAGCAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
1722456 GACAAAATGAGCGGGCGAACGGGCGGGCACTACGCCGACCAGAGATGCGGGATGCGCAAGCCGTG
512 GACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTG
**
1722521 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAACACCATTTTT
577 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
1722586 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
642 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
** **
1722651 GTTTTGAATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGA
707 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGA
1722716 AAGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
772 AAGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
*
1722781 TCAGCTAAAAACTCTAAGTGTACAGGATTTTGTGACC
837 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC
* * * *
1722818 ATTTGAAAAAAATGTCCCCATTTCAAATAGTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTC
1 ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
1722883 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGC
66 AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * *
1722948 CATGTACCAGCACCCATTGCACATCATGTGCGCATATCCCCCCGGCCGCCCAATCGTCGGAACCC
131 CAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCGGCC-CCCAATCGTCGGAACCC
* * * *
1723013 AAATGCCACCGGTCAGGCTCTCCGACGATGCTCCGGTGATAGTGCCCCGAGCGAAAAAAAATACG
195 AAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATAGTGCCCCGAGCAAAAAAAAATACG
** *
1723078 GCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTTAGTCTGATCTGATCTTAGACT
260 GCACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCGGTCCGATCTGATCTTAGACT
* * * ** * *
1723143 GGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCAGGCACTCAATCAGCCAGA
325 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAACCAGCCAGA
* *
1723208 GTGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCATGCTACCGATCCTACTACCG
390 GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTACCGATCCTACTA-CG
* * *
1723273 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
454 CAACCCTCGATCT-GTCTGATCTTAGACTAGCAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
1723338 ACGAGCGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
518 ACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
*
1723403 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTCATGGCT
583 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCT
*
1723468 TGTAAATTCATACAATGGTCCCTTAAGACTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
648 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
1723533 TATTTT
713 TATTTT
1723539 GAAAAAAGTG
Statistics
Matches: 2157, Mismatches: 269, Indels: 78
0.86 0.11 0.03
Matches are distributed among these distances:
856 228 0.11
857 84 0.04
858 70 0.03
866 2 0.00
867 1 0.00
868 1 0.00
869 1 0.00
872 6 0.00
873 252 0.12
874 187 0.09
875 77 0.04
876 414 0.19
877 125 0.06
878 564 0.26
879 144 0.07
880 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (873 bp):
ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGATTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCCCGGCCCCCAATCGTCGGAACCCA
AATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATAGTGCCCCGAGCAAAAAAAAATACGG
CACCAGCACATGCCCAAGCCCAGCATGTGCACCCACAACCCTCGGTCCGATCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAACCAGCCAGAG
GGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTACCGATCCTACTACGCA
ACCCTCGATCTGTCTGATCTTAGACTAGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
AGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAAGAGTTTT
GGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAGGATTTTGTGACC
Found at i:1728423 original size:845 final size:849
Alignment explanation
Indices: 1726630--1729693 Score: 3489
Period size: 845 Copynumber: 3.6 Consensus size: 849
1726620 TCCGGTGATT
*
1726630 GGGGGCGGGGGGGTGTGCGCACGTGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * * *
1726695 CCAATCCCTTATCAAACCTTGTGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
1726760 GCTGCCAGTAGCCATTAAAGTGGCCGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCCTGT
131 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
* *
1726825 ACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAC
196 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
1726890 AGGTTTAGGGCTAAAACT-C--CTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTTCAA
261 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC-TGAACCATAAAAAGTTTCAA
* * * * *
1726952 AAATCGTGAAAAATAAAAATGAGTCGTCTTACCATTAAACTTCATATGAAGGCTTAAGCGACCAT
325 AAATCGTGAAAAATAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
* *
1727017 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAATATGTGCCTAAACC
390 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
** * * *
1727082 CACCTACCACCCTATCCTTCCATGACTTACGCATCCCGCCTCTCTGGTCGACGTAGTGCCCGCCG
455 CACCTACCACCCTATCGATCCATGACTTGCGCAT-CCGCCTCTCTGG-CGGCGTAGTGCCCGCTG
* *
1727147 CCCGCCCA-CTCGTTTCGTCGGTTGGCTTAGGTATAC-GAGTTCATTCCCAGTCTAAGATCGGAT
518 CCCGCCCAGCT-GTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATT-CCAGTCTAAGATCGGAC
* * * ** * *
1727210 CAGACCA-AAGGTTGTGGTGGTAGGATCGATAGCACACTGAGGGGGACCCAGTCGATCCCCAGGT
581 CAGA--ATGAGGTTGTGGT-GCAGGATCG-CAGCACACTGAGGGGGACTGA-CCGATCCCCAGCT
** * * * * * ** *
1727274 TACGCATCCTACCCCTCTGGTCGGTTGTGCGCCCGCACGCTCGTTTCGTTCGTTGACTTAAGCAT
641 TGTGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCAT
* * * * * * * *
1727339 ATGGAGTTCATTCCCAGCCTAAGATCGGATCAGACCGAGGGTTGTAGGTGCACATGCTGGGCTCA
706 ACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTG-CGGTGCACATGCT-GGCTCG
* * **
1727404 GGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCGCCGGAGAACCTGACCGTCGGC
769 GGCATGTGCTGGTGCCGCATTTTTTTTCA-CCGGGGCACCATCGTCGGAGAA-CTAACCGGAGGC
1727469 ATTGCGGTTCCGGCGATTGA
832 ATTGCGG-T-CGGCGATTGA
*
1727489 GGGGGCGGGGGGATGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
1 GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
1727554 CCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTAT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
1727619 GCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCCTGT
131 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
* *
1727683 ACACTTCGAGTTTTTAGCT-AAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
196 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
1727747 AAGTTTGGAGCCAAAACTCCCTTCTGAAAAAAATTTTAAAAAAATCT-ACACGCATAAAAATTTT
261 AAGTTTGGGGCCAAAACT-CCTTCTG-AAAAAATTTTAAAAAAATCTGA-AC-CATAAAAA-GTT
* * *
1727811 TAAAAAATTCACTGAAAAAT-AAAACGAAGTCATCTTGCCAATGAAACTTCACCATCG-AGGCTT
321 TCAAAAA-TC-GTGAAAAATAAAAACG-AGTCGTCTTGCC-ATGAAACTTCA-CAT-GAAGGCTT
* * *
1727874 -A-GGACC-GT-TATGAATTT-CAAGCCAT-AAAATGGCATTGGTAATGGCAAAAATATGAAGA-
380 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG-CATGGCAGAAATATGAAGAT
* * * * * *
1727932 G-G-CTAAACCTCA-CTACAATCCTATCAGATCCACAGGCTTGTGCATCCGCCTCTCT-GCGGTG
444 GTGCCTAAACC-CACCTACCACCCTATC-GATCCA-TGACTTGCGCATCCGCCTCTCTGGCGGCG
* * ** *
1727993 AAGTGCCTGCTGCCCG-CCAGCTGTTT-G-CGGTT-TTTTAGG-ATACGGAGTT-ATT-CAATCT
506 TAGTGCCCGCTGCCCGCCCAGCTGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCAGTCT
** * * *
1728051 ACTATCAGACCAGGAATGAGGTTGTGGTGCAGGATCGCAGCGGGC-CAAGAGGGGGACTGACCGA
571 AAGATCGGACCA-GAATGAGGTTGTGGTGCAGGATCGCAGC--ACAC-TGAGGGGGACTGACCGA
* * * *
1728115 TCCTCAGTCTTGTGCATTCT-GCCTTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTG
632 TCCCCAG-CTTGTGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTG
* * *
1728179 ACTTAGGTATACGAAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGGGTGCACAT
696 ACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGC-GGTGCACAT
* * ** * * * * * *
1728244 ACTGGACTCGGGCATGTGCAGGTGCCATATTTTTTTTCGCCAGGGCCACCAACGTCAGAGTA-TT
760 GCTGG-CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACC-GGGGCACCATCGTCGGAGAACTA
*
1728308 ACCGGAGAACA-TGACCGG-CGGC-ATTG-
823 ACCGGAG-GCATTG--CGGTCGGCGATTGA
* * *
1728334 GGGGGCGGGGGGGTGTGCGCACATGATGTGCAATGGATGCTGGTACTTTGCCCTTATATTGGCCC
1 GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
1728399 CGTATCCATCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
1728464 GCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATCCTGT
131 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
* *
1728529 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTTCC
196 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
1728594 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTGTAAAAAAATCCTGAACCGTAAAAAGTTTCAA
261 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT-CTGAACCATAAAAAGTTTCAA
* *
1728659 AAATCGTGAAAAATAGAAAACTAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
325 AAATCGTGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
1728724 TTGTATGAA--T-----CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
389 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
1728782 CCACCTACCACCCTATCGATCCATGACTTGCGCATCCTGCCTCTCTGGCTGGCGTAGTGCCCG-T
454 CCACCTACCACCCTATCGATCCATGACTTGCGCATCC-GCCTCTCTGGC-GGCGTAGTGCCCGCT
* * * *
1728846 -CCACTTGTCC-GCTTGTTTGGTCGATTGGCTGAGGAATACGGAGTTCATTCCTAGTCTAAGATC
517 GCC-C--GCCCAGC-TGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCC-AGTCTAAGATC
* * * * *
1728909 GGACC-GAACTGAGGGTTGGGGCAGCAAGATCAGCAGCACACTGAGGAGGACCTGGCCGATCCCC
577 GGACCAGAA-TGA-GGTTGTGG-TGCAGGATC-GCAGCACACTGAGGGGGA-CTGACCGATCCCC
* * *
1728973 AGCTTGTGCATCCTACCCCTCTGGCTGGCCGAGCACCCGCACGCTCATTTCGTTGCTTGACTTAG
637 AGCTTGTGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA-TT--TTG--TG-----G
* *
1729038 GCATATGGAGTTCATTCCCAGTTTAAGCATAC-AGAGTTCATTCCCAGTCTCAGATCTGATCGGA
692 G--T-T-GA---C-TT---AG-----GCATACGA-AGTTCATTCCCAGTCTAAGATCAGATCGGA
* * **
1729102 TCAAGGGTTATCGGTGCACATGCTAGGCTCGGGCATGTGCTGGTGTGGCATTTTTTTTCACTCGG
740 CCAAGGGTT-GCGGTGCACATGCT-GGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCAC-CGG
* * *
1729167 GGCACCATCATCGGAGAACCTAATC-GACGGCATTGGGGTTTCGGCGATTGA
802 GGCACCATCGTCGGAGAA-CTAACCGGA-GGCATTGCGG--TCGGCGATTGA
1729218 GGGGGCGGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
1 GGGGGC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
1729283 CCCCTA-CCCTCATTAAAGCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
64 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
1729347 TTGCTGCCAGTAGCCATTAAAGTGACT-ACAATGGGGACACTTTTTTCAAATGGTCAC-AAATCC
129 TTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCC
* *
1729410 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACTTCT
193 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * *
1729475 ACCATGTTTGGGGCCAAAACTCCTT-TTAAAAAATTTTTAAAAAATCCAGAACCATCAAAAGTTT
258 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT-CTGAACCATAAAAAGTTT
* * *
1729539 CAAAAATAGTGAAAAATAGAAAAGGAGTCGTCTCGCCATGAAACTTCACATGAAGGCTTAAGGGA
322 CAAAAATCGTGAAAAATA-AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
*
1729604 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGGTGTGCCTA
386 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
1729669 AACCCACCTACCACCCTATCGATCC
451 AACCCACCTACCACCCTATCGATCC
1729694 CCGGCTTGCG
Statistics
Matches: 1870, Mismatches: 216, Indels: 207
0.82 0.09 0.09
Matches are distributed among these distances:
839 21 0.01
840 26 0.01
841 28 0.01
842 42 0.02
843 28 0.01
844 17 0.01
845 193 0.10
846 60 0.03
847 67 0.04
848 12 0.01
849 19 0.01
850 161 0.09
851 46 0.02
852 40 0.02
853 55 0.03
854 17 0.01
855 5 0.00
856 4 0.00
857 63 0.03
858 64 0.03
859 174 0.09
860 18 0.01
861 28 0.01
862 49 0.03
863 19 0.01
864 8 0.00
865 23 0.01
866 12 0.01
867 10 0.01
868 1 0.00
870 1 0.00
871 2 0.00
874 2 0.00
878 1 0.00
879 95 0.05
880 8 0.00
881 6 0.00
882 4 0.00
883 109 0.06
884 98 0.05
885 106 0.06
886 59 0.03
890 69 0.04
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (849 bp):
GGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTGAACCATAAAAAGTTTCAAA
AATCGTGAAAAATAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCATGACTTGCGCATCCGCCTCTCTGGCGGCGTAGTGCCCGCTGCCC
GCCCAGCTGTTTCGTCGGTTGGCTTAGGAATACGGAGTTCATTCCAGTCTAAGATCGGACCAGAA
TGAGGTTGTGGTGCAGGATCGCAGCACACTGAGGGGGACTGACCGATCCCCAGCTTGTGCATCCT
ACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGAAGTTCA
TTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGGTGCACATGCTGGCTCGGGCATGTGCTGG
TGCCGCATTTTTTTTCACCGGGGCACCATCGTCGGAGAACTAACCGGAGGCATTGCGGTCGGCGA
TTGA
Found at i:1731257 original size:26 final size:26
Alignment explanation
Indices: 1731221--1731271 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
1731211 TTGACTTAGG
* *
1731221 CATACGGAGTTCATTACTAGTCTAAC
1 CATACAGAGTTCATTACCAGTCTAAC
*
1731247 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTACCAGTCTAA
1731272 GATTGGATCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.29
Consensus pattern (26 bp):
CATACAGAGTTCATTACCAGTCTAAC
Found at i:1734228 original size:875 final size:875
Alignment explanation
Indices: 1730410--1734441 Score: 5060
Period size: 874 Copynumber: 4.6 Consensus size: 875
1730400 GGACGGGATT
* * * * *
1730410 AAGGGTCACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTTTCGCCCGGG
1 AAGGGTTACAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA-TTTTTTTTCGCTCGGG
* * *
1730475 GCACCATCGTCGGAGCA---T--------CTGACCGGCGACGTTGGGGTTCCGGCGATT------
65 GCACCATCG-CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGG
*
1730523 G--GGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
129 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
1730586 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTCACAGGTTTTCGG
194 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
1730651 CCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCCTGTACAC
259 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
1730716 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
324 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * *
1730781 TTGGAGCCAAAACTCCTTCTGAAAAAAG-TTTAAAAAAATCCCGAACCA-TAAAAAGTTTCAAAA
389 TTGGGGCCAAAACTCCATCTG-AAAAAGTTTTAAAAAAATCTCGAA-CAGTAAAAAGTTTCAAAA
1730844 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
452 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* *
1730909 GTATGAATTTACAATCCAAAAAAATGGCATTGGCATGGAAAAAATATGAAGATGTGCCTAAACCC
517 GTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GAAAAAATATGAAGATGTGCCTAAACCC
* **
1730974 ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCT----GGC-TA---ACGTAGTG
581 ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTTACGCACCG
* ** * * **
1731031 CCCACCCGCTAATTGCATCGGTTGGGTTAGGCATATAGAGTTCATTCCCAGTCTAAGATTAGACC
646 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACC
* ** * * **
1731096 GGACTGAGGGTTGTAGTAGCAAG-ATCGGTAGCACGCTAAGGGGGACCTGATCGATCCATGGCTT
711 GGACCGAGGGTTGTAACAGCAAGAATCGGCAGCACGCTAAGGGGGACCCGATCGATCCCCGGCTT
* ** * *
1731160 ACGCATCCTGCCCCTCTGGTTGGCTGAACGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATA
776 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
1731225 CGGAGTTCATTACTAGTCTAACCATACAGAGTTCATTCCCAGTCTAAGATTGGATCGG
841 CGGAGTTCATTCCCAGTCGAA-GAT-C--AG---A----C---C----A---GA-C-C
* *
1731283 ATTGAGGGTTACAGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTTTTTGCTCG
1 A---AGGGTTACAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCTCG
* * * *
1731348 GGG---CA---C----CATCGTCGGAGAACCTGACTGGCAGCATTGGGGTTCCAACGATTGGGGT
63 GGGCACCATCGCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGG
*
1731403 GG-CGGGGGGTTATGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
128 GGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
1731467 TATCCCTCATCAAATCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGC
192 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* *
1731532 TGCCAGTAGCCATTAAAGTGTCTGAAATGGCGACACATTTTTCAAATGGTCACAAAATCCTGTAC
257 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* * * * *
1731597 ACTTCGAGTTTTTAGCTGAATGTTTTTATGCATGTCAATAAAAATACAAGGATCATGTCTACCAA
322 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAA
* * *
1731662 G-TTAGGGCAAAAACT-CATTCTG-AAAAGATTTTAAAAAAATCTGGAATC-GTAAAAAGTTTCA
387 GTTTGGGGCCAAAACTCCA-TCTGAAAAAG-TTTTAAAAAAATCTCGAA-CAGTAAAAAGTTTCA
*
1731723 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTGAAGGGACC
449 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
* * * *
1731788 AATGTATGAATTTATAAGCCATAAAAATGGCATTGGCATGGAAAATATATGAGGATGTGCCTAAA
514 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT-GAAAAAATATGAAGATGTGCCTAAA
* * * * *
1731853 CCCGCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTTTTTGGCCGACGTAGTGCTA-G
578 CCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT--TACG
* *
1731917 C-CCGCCTGCCCTCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
641 CACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
* * * ***** * ** * * *
1731981 GGACTGGACTGAGGGTTACGGTAGC-AGCATCAACAGCAC-ATAGATGGGGACCCGACCGATCCC
706 AGACCGGACCGAGGGTTGTAACAGCAAGAATCGGCAGCACGCTA-AGGGGGACCCGATCGATCCC
* * * * * *
1732044 CAGCTTGCGCATCCTGCCCCTCTGGTCGGCTTAGAGCCCGCATGCTCGTTTTGTGGGTTGACTTA
770 CGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
1732109 GGCGTACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
835 GGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCAGACC
* *
1732150 AAGGGTTGCAGGTGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACA-TTTTTTTCGCTCGGGG
1 AAGGGTTACAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCTCGGGG
* * * * ** * *
1732214 CACCATCATCGGAGCATCGTCAGAGAACCTGACCAGCGGCATTTGGGTTTTGATGATTGGAGGGG
66 CACCATC-GCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGG
*
1732279 CCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
130 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
* *
1732344 CCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGCTTGCTGC
195 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
1732409 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
260 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
* * *
1732474 TGGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTT
325 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
** * * * *
1732539 TGGGGTGAAAACTCCGTCTGAAAAAATTTTAAAAAAATCTTGAACTGTAAAAAGTTTCAAAAATC
390 TGGGGCCAAAACTCCATCTGAAAAAGTTTTAAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATC
* * * *
1732604 ATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAATTTTACATGAAGG-TTATGGGACCATTGTA
455 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* * *
1732668 TGAATTTAAAAGCCATAAAAATGGCATTGGAATGATAGAAATATGAAGATGTGCCTAAACCCACC
520 TGAATTTACAAGCCATAAAAATGGCATTGGCATGA-AAAAATATGAAGATGTGCCTAAACCCACC
* * * * ** **
1732733 TACCACCCTATCGATCCATGACTTGCGCATCCCGCTTTTTTTACCGGCGTAGTGCCCGCACGCCC
584 TACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT-TACGCA---CC
* * * *
1732798 GCCCGCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTATAAGATA
645 G--C-C-CGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
** ** * *
1732863 AGATTGGACCGAGGGTTGTGGCAGC-AGAATCGGCAGCACGCTAAAGTGGACCC-AGTCGATCCC
706 AGACCGGACCGAGGGTTGTAACAGCAAGAATCGGCAGCACGCTAAGGGGGACCCGA-TCGATCCC
* * * * *
1732926 CGGCTTGCGCATCCTACCCCTCTAGCCGGTTGAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTA
770 CGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* *
1732991 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCATACC
835 GGCATACGGAGTTCATTCCCAGTCGAAGATCAGACCAGACC
* * * * *
1733032 AAGGGTTGC-GAGTGCACATGCTAGGCTCAGGCATGTGCTGGTGCCATATATTTTTTT-GCCCGG
1 AAGGGTTACAG-GTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT-TTTTTTTCGCTCGG
* * * *
1733095 GGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCACTAGGGTTCC-AGCGATTGAGA
64 GGCACCATCG-CGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATTGGGG
* * *
1733159 TGGCCAGGGCGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATAATGGCCC
127 GGGCC-GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
1733224 CCTACCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
190 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
1733289 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAAGGTCACAACATCCTGT
255 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
* *
1733354 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
320 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACC
*
1733419 AAGTTTGGGGCCAACACTCCATCTGAAAAAGTTTTAAAAAAATCTCGAACAGTAAAAAGTTTCAA
385 AAGTTTGGGGCCAAAACTCCATCTGAAAAAGTTTTAAAAAAATCTCGAACAGTAAAAAGTTTCAA
*
1733484 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAATGGACCA
450 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
* *
1733549 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACT-ACAGAAATATGAAGATATGCCTAAA
515 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGA-AAAAATATGAAGATGTGCCTAAA
* * *
1733613 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTTACCGC
578 CCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTTA-CGC
* * * * * **
1733678 A-CGCCCGCCCGCTCGTTCCGTCGATTGGCTTAGGCATACGGGGTTCATTCCCAGTCTATGATCG
642 ACCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTA
* * * * * * *
1733742 GACCAGACCAAGGGTTGCAACGGCAAG-TTTGGCAGCACGC-AGAGGGGGACCCGGTCGATCCCC
707 GACCGGACCGAGGGTTGTAACAGCAAGAATCGGCAGCACGCTA-AGGGGGACCCGATCGATCCCC
* * *
1733805 GGCTTGCGCATCTTGCCTCTCTGGCCGGCTGAGCGCCTGC-CGCTCGTTTCGTGGGTTGACTTAG
771 GGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
*
1733869 GCATACGGAGTTCATTCCCAGTCGAAGATCGGACC-GAACC
836 GCATACGGAGTTCATTCCCAGTCGAAGATCAGACCAG-ACC
* ** ** *
1733909 GAGGGTTATGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCACTCGGGG
1 AAGGGTTACAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCTCGGGG
* *
1733974 CACCATCGCAGGAGCATCG-CGGGGGAACCTGACCGGCGGCATTGGGGTTCCGATGATTGGGGGG
66 CACCATCGC-GGAGCATCGTC-GGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGG
* * *
1734038 GCCTGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTA
129 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1734103 TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
194 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
1734168 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
259 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* * *
1734233 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAAT
324 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
** * * * *
1734298 TTGGGGTGAAAACTCCTTTTGAAAAAG-TTTAAAAAAATCCCGAACTGTAAAAAGTTTCAAAAAT
389 TTGGGGCCAAAACTCCATCTGAAAAAGTTTTAAAAAAATCTCGAACAGTAAAAAGTTTCAAAAAT
* *
1734362 CATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATTAAGGCTTAAGGGACCATTGT
454 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
1734427 ATGAATTTACAAGCC
519 ATGAATTTACAAGCC
1734442 TCAACATTCT
Statistics
Matches: 2775, Mismatches: 299, Indels: 169
0.86 0.09 0.05
Matches are distributed among these distances:
863 15 0.01
864 46 0.02
866 2 0.00
867 2 0.00
868 2 0.00
869 2 0.00
870 1 0.00
872 3 0.00
873 3 0.00
874 509 0.18
875 406 0.15
876 59 0.02
877 161 0.06
878 135 0.05
879 4 0.00
880 7 0.00
881 5 0.00
882 452 0.16
883 295 0.11
884 9 0.00
885 345 0.12
886 125 0.05
887 3 0.00
888 1 0.00
889 6 0.00
890 175 0.06
891 1 0.00
892 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
AAGGGTTACAGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCTCGGGG
CACCATCGCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGC
CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAACTCCATCTGAAAAAGTTTTAAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCA
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCATGAAAAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTTACGCACCGCCCGC
CCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACC
GAGGGTTGTAACAGCAAGAATCGGCAGCACGCTAAGGGGGACCCGATCGATCCCCGGCTTGCGCA
TCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCGAAGATCAGACCAGACC
Found at i:1739761 original size:59 final size:58
Alignment explanation
Indices: 1739631--1739973 Score: 390
Period size: 59 Copynumber: 5.7 Consensus size: 58
1739621 TCCTGCGCAG
* * *
1739631 GGAAAATTGATACTTTGAACTTTTCCCTAAAAA-TATTCTTTTGAAACTTTA-ATTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATTATT-TTTTGAAACTTTATTTTTA-A
* * *
1739689 GGAAGATTGATACTTTAAACTTTTCCTC-AAAAATTGATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAAATT-ATTTTTTGAAACTTTATTTTTAA
* * * *
1739748 GGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTT-CCCAAAAA-A-TTATTTTTT-GAAACTTT-ATTTTTAA
* *
1739811 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCTT-TTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CAAAAA-ATTATTTTTTGAAACTTTATTTTTAA
1739870 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATATATTTTTTTGGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCC-AAAAA-AT-TA-TTTTTT-GAAACTTTATTTTTAA
*
1739933 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA-TATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATTATTTTTT
1739974 TTTATTTTTA
Statistics
Matches: 251, Mismatches: 18, Indels: 32
0.83 0.06 0.11
Matches are distributed among these distances:
58 36 0.14
59 78 0.31
60 22 0.09
61 14 0.06
62 23 0.09
63 78 0.31
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.44
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAAATTATTTTTTGAAACTTTATTTTTAA
Found at i:1739826 original size:63 final size:61
Alignment explanation
Indices: 1739631--1739976 Score: 420
Period size: 63 Copynumber: 5.7 Consensus size: 61
1739621 TCCTGCGCAG
* * * *
1739631 GGAAAATTGATACTTTGAACTTTTCCCTAAAAATA---TTCTTTTGAAACTTTA-ATTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGAAACTTTATTTTTA-A
* * * ** *
1739689 GGAAGATTGATACTTTAAACTTTTCCTC-AAAA-ATTGATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGAAACTTTATTTTTAA
* * *
1739748 GGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTT-GAAACTTT-ATTTTTAA
* ** *
1739811 GGAAAATTGATACTTTCAACTTTTCCTC-AAAA-ACCTTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGAAACTTTATTTTTAA
* *
1739870 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATATATTTTTTTGGAAACTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATAT-T-TTTTTTTTGAAACTTTATTTTTAA
1739933 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTT
1739977 ATTTTTATTT
Statistics
Matches: 248, Mismatches: 28, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
56 1 0.00
57 4 0.02
58 24 0.10
59 71 0.29
60 20 0.08
61 26 0.10
62 12 0.05
63 90 0.36
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (61 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGAAACTTTATTTTTAA
Found at i:1739852 original size:122 final size:117
Alignment explanation
Indices: 1739631--1739974 Score: 460
Period size: 122 Copynumber: 2.9 Consensus size: 117
1739621 TCCTGCGCAG
* * * *
1739631 GGAAAATTGATACTTTGAACTTTTCCCTAAAAATA--TTCTTTT-GAAACTTTAATTTAGAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTTTGGAAACTTTATTTTA-AGGAA
* *
1739693 GATTGATACTTTAAACTTTTCCTCAAAAATTGATTTTTTGAAAATTTATTTTTAA
65 AATTGATACTTTCAACTTTTCCTCAAAAATT--TTTTTTGAAAATTTATTTTTAA
* * *
1739748 GGAAAATGGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTTGGAAATTTTGATTTTCAAGG
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATA-TTTTTTTTTGGAAACTTT-ATTTT-AAGG
*
1739813 AAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAATTTTATTTTTAA
63 AAAATTGATACTTTCAACTTTTCCTCAAAAA--TTTTTTTTGAAAATTTATTTTTAA
1739870 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATATATTTTTTTGGAAACTTTATTTTTAAGG
1 GGAAAATTGATACTTTCAACTTTTCCCAAAAAATAT-T-TTTTTTTGGAAACTTTA-TTTTAAGG
*
1739935 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
63 AAAATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTT
1739975 TTATTTTTAT
Statistics
Matches: 202, Mismatches: 13, Indels: 20
0.86 0.06 0.09
Matches are distributed among these distances:
117 32 0.16
120 7 0.03
121 15 0.07
122 126 0.62
123 20 0.10
124 2 0.01
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.44
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCCAAAAAATATTTTTTTTTGGAAACTTTATTTTAAGGAAA
ATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTGAAAATTTATTTTTAA
Found at i:1739999 original size:5 final size:5
Alignment explanation
Indices: 1739991--1740094 Score: 83
Period size: 5 Copynumber: 20.6 Consensus size: 5
1739981 TTATTTAAAG
*
1739991 AAAAT AAAAT AATAAA ACAAAT AAAAGT GAAAAT AAAAT AAAAT -AAAT
1 AAAAT AAAAT AA-AAT A-AAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
* * *
1740039 AAAGA- AAAGT AAAAC AAAAT --AAT AAAAT AAAAT AAAA- AATAAA AAAAT
1 AAA-AT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AAAAT
1740087 AAAAT AAA
1 AAAAT AAA
1740095 GGTAAAAAGG
Statistics
Matches: 81, Mismatches: 7, Indels: 22
0.74 0.06 0.20
Matches are distributed among these distances:
3 3 0.04
4 6 0.07
5 56 0.69
6 11 0.14
7 5 0.06
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:1740022 original size:29 final size:29
Alignment explanation
Indices: 1739990--1740075 Score: 104
Period size: 29 Copynumber: 2.9 Consensus size: 29
1739980 TTTATTTAAA
*
1739990 GAAAATAAAATAATAAAACAAATAAAAGT
1 GAAAATAAAATAATAAAAAAAATAAAAGT
*
1740019 GAAAATAAAATAA-AATAAATAAAGAAAAGT
1 GAAAATAAAATAATAA-AAA-AAATAAAAGT
*
1740049 -AAAACAAAATAATAAAATAAAATAAAA
1 GAAAATAAAATAATAAAA-AAAATAAAA
1740076 AATAAAAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
28 2 0.04
29 35 0.71
30 12 0.24
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (29 bp):
GAAAATAAAATAATAAAAAAAATAAAAGT
Found at i:1740132 original size:4 final size:4
Alignment explanation
Indices: 1740125--1740175 Score: 63
Period size: 4 Copynumber: 13.5 Consensus size: 4
1740115 AACCTAATCT
* *
1740125 AATA AATA AA-A AATA AATA AATA AA-A AACA AAT- AATA AATA AAAA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA
1740170 AATA AA
1 AATA AA
1740176 AAAAACTGGA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
3 9 0.22
4 32 0.78
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (4 bp):
AATA
Found at i:1740164 original size:26 final size:26
Alignment explanation
Indices: 1740128--1740178 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
1740118 CTAATCTAAT
*
1740128 AAATAAAAAATAAATAAATAAAAAAC
1 AAATAAAAAATAAAAAAATAAAAAAC
*
1740154 AAATAATAAATAAAAAAATAAAAAA
1 AAATAAAAAATAAAAAAATAAAAAA
1740179 AACTGGAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.82, C:0.02, G:0.00, T:0.16
Consensus pattern (26 bp):
AAATAAAAAATAAAAAAATAAAAAAC
Found at i:1740209 original size:5 final size:5
Alignment explanation
Indices: 1740199--1740224 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
1740189 GCTCAGAGTA
1740199 CGGCT CGGCT CGGCT CGGCT CGGCT C
1 CGGCT CGGCT CGGCT CGGCT CGGCT C
1740225 AAGGAAGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.42, G:0.38, T:0.19
Consensus pattern (5 bp):
CGGCT
Found at i:1740651 original size:19 final size:19
Alignment explanation
Indices: 1740629--1740667 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
1740619 TGGCCAGAAT
1740629 TTTCACCGAAAAATGCAAC
1 TTTCACCGAAAAATGCAAC
* * *
1740648 TTTCATCGGAAAATTCAAC
1 TTTCACCGAAAAATGCAAC
1740667 T
1 T
1740668 AGAATCTGGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.28
Consensus pattern (19 bp):
TTTCACCGAAAAATGCAAC
Found at i:1741047 original size:23 final size:24
Alignment explanation
Indices: 1740995--1741040 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
1740985 CCAAAAAAAG
1740995 AAAAAAAAATAATAATCAGATAAAC
1 AAAAAAAAA-AATAATCAGATAAAC
*
1741020 GAAAAAAAAAATAA-CAGATAA
1 AAAAAAAAAAATAATCAGATAA
1741041 TTAAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
24 5 0.25
25 8 0.40
ACGTcount: A:0.74, C:0.07, G:0.07, T:0.13
Consensus pattern (24 bp):
AAAAAAAAAAATAATCAGATAAAC
Found at i:1741060 original size:20 final size:22
Alignment explanation
Indices: 1740996--1741055 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 22
1740986 CAAAAAAAGA
**
1740996 AAAAAAAATAATAATCAGATAAACG
1 AAAAAAAA-AATAA-CAGAT-AATT
1741021 AAAAAAAAAATAACAGATAATT
1 AAAAAAAAAATAACAGATAATT
*
1741043 AAAAATAAAATAA
1 AAAAAAAAAATAA
1741056 GATAAATCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 14 0.44
23 5 0.16
24 5 0.16
25 8 0.25
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.17
Consensus pattern (22 bp):
AAAAAAAAAATAACAGATAATT
Found at i:1741096 original size:42 final size:39
Alignment explanation
Indices: 1741025--1741103 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 39
1741015 TAAACGAAAA
1741025 AAAAAATAACAGATAATTAAAAATAAAATAAGATAAATCCT
1 AAAAAATAACAGATAA-TAAAAATAAAATAA-ATAAATCCT
*
1741066 AAAAAATTACAAGATAA-AAAAATAATAAATAAATAAAT
1 AAAAAATAAC-AGATAATAAAAAT-A-AAATAAATAAAT
1741104 TATAATATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
40 6 0.18
41 16 0.47
42 12 0.35
ACGTcount: A:0.70, C:0.05, G:0.04, T:0.22
Consensus pattern (39 bp):
AAAAAATAACAGATAATAAAAATAAAATAAATAAATCCT
Found at i:1741172 original size:22 final size:21
Alignment explanation
Indices: 1741130--1741173 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
1741120 ATATATAACT
* *
1741130 ATATAAACAAAATACATATAA
1 ATATAAACAAAAAAAATATAA
*
1741151 ATATTAACAAAAAAAATAATAA
1 ATATAAACAAAAAAAAT-ATAA
1741173 A
1 A
1741174 GATATACATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (21 bp):
ATATAAACAAAAAAAATATAA
Found at i:1741266 original size:16 final size:16
Alignment explanation
Indices: 1741224--1741268 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 16
1741214 TAAAATGCCT
*
1741224 AAAATACAAAAGAAAA
1 AAAATACAAAATAAAA
1741240 AAAATA-AAAATAAAA
1 AAAATACAAAATAAAA
*
1741255 ATAATACAAAATAA
1 AAAATACAAAATAA
1741269 GAACCGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.13
Consensus pattern (16 bp):
AAAATACAAAATAAAA
Found at i:1741960 original size:25 final size:26
Alignment explanation
Indices: 1741909--1741960 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1741899 GTTGACTTAG
1741909 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1741935 GCATATGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1741960 G
1 G
1741961 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1742845 original size:26 final size:26
Alignment explanation
Indices: 1742809--1742861 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1742799 GTTGACTTAG
*
1742809 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1742835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1742861 G
1 G
1742862 ATCCTACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1743078 original size:901 final size:888
Alignment explanation
Indices: 1741338--1743559 Score: 3060
Period size: 901 Copynumber: 2.5 Consensus size: 888
1741328 TGGGTGTCTA
*
1741338 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
1 CAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
* *
1741403 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
66 TCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
** *
1741468 TGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT-CTGAACTGTAAAAAGTTTCAAAAATC
131 T-GGG-CAAAAC-CCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
* * *
1741532 GTGAAAAAT-AAAAACGACTCGTCTTGCCATGAAACTTCACATGAAGGCCTAAGGGACCATTGCA
193 GTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* * *
1741596 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATTAAGATGTGCCTAAATCCACC
258 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
1741661 TACCACCCTATCGATCCACGACTTGTGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
323 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCTG-GGTAGTGCCCGCCCGCCC
* * * * *
1741726 GACCA-CTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT-T-AAATCGAACCGG
387 G--CAGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAG
* ** * ** * * *
1741788 ACCGAAGGTTGCGGTAGCAGGATCAAAAGGATGCTGAGGGGACCCGGCCAATCCCCGGCTTGCAC
450 ACCGAGGGTTGCAATAGCAGGATCAAAAGCACACTGAGGGGACCCGACCAAGCCCCGACTTGCAC
* *
1741853 ATCCTGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
515 ATCCTGCCCCTCTAGCCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGA
* * * *
1741918 GTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCAGTCTAAGATCGGATCGGATCAAGGGTTGC
580 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCCGACCGGACCAAGGGTTGC
* * * * *
1741983 GGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACCTAGGGCACCATCGC
645 GGGTGCACAGGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTCTTTCACCCAGGGCACCATCAC
** * *
1742048 CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCAGCAATTGGGGGGCCTGGGGGGT
710 CGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCAGCAATTGGGGGGCCGGGGGGGT
1742113 GTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
775 GTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
*
1742178 AACCTCAAGAACTCACACCCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
840 AACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-G---G-T
1742232 GCCAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
1 --CAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* ***
1742297 CTTCGAGTTCTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCGTATCTACCAAG
64 CTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAG
1742362 TTTGGGAACAAAACCCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
129 TTTGGG--CAAAA-CCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
* * *
1742427 TCATGAAAAATAAAAAACGAGTCGTCTTGCCGTGAAACTTCAGATGAAGGCTTAAGGGACCATTG
191 TCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
*
1742492 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGATAGAAATATGAAGATGTGCCTAAACCCA
256 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCA
1742557 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCTGGGTAGTGCCCGCCCGCC
321 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCTGGGTAGTGCCCGCCCGCC
* * * * *
1742622 TGCATGCTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCACTCCCAGTCTAAAATTGGACCAA
386 CGCA-GCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAG
* * * * *
1742687 ACCGAGGGTTGCAATAGTAGGATCAACAGCACACTGAAGGGGACCCGACCGAGCCTCGACTTGCG
450 ACCGAGGGTTGCAATAGCAGGATCAAAAGCACACTG-AGGGGACCCGACCAAGCCCCGACTTGCA
* * *
1742752 CATCCTGCCCCTCTAGCTGGTTGAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGG
514 CATCCTGCCCCTCTAGCCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGG
* *
1742817 AGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCTACCGGACCAAGGGTT
579 AGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGATCCGACCGGACCAAGGGTT
* * * *
1742882 GTGGGTGCACAGGCTGGGCTCGGGCATGTGCTAGTGTCGTATTTTCTTTCACCCGGGGCACCATC
643 GCGGGTGCACAGGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTCTTTCACCCAGGGCACCATC
* * * * *
1742947 ACCGGAGCTTCACCGAAGAATCTGACCGGCGGCATTGGGGTTTC-GGAGATTGGGGGGCCGGGGG
708 ACCGGAGCATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCAGCA-ATTGGGGGGCCGGGGG
* *
1743011 GGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
772 GGTGTGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCA
*
1743076 TCAAACCTCAAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
837 TCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
1743128 ---TTG-----AAA-----TG--A---GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
1 CAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
* * * * *
1743175 TTGAGTTTTTAGCTGAACTTTTTTGTGCATGCCCATAAAAATACAAGGATCACGTCTACAAAGTT
66 TCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
* **
1743240 TGGG------GC--C--AAAAAA--TTAAAAAAATCCCAAACCGTAAAAAGTTTGGAAAATCGTG
131 TGGGCAAAACCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
* * * *
1743293 AAAAATAGAAAATGAGTTGTCTTGCCATGAAGCTTCACATGAAGGCTTAAGGGACCATTGTATGA
196 AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
1743358 ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
261 ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * *
1743423 CACCCTATCGATCCACGGCTTGCACATCCCGTCTCTTTGGTTGGCGTAATGCCCGCCCGCCCGCC
326 CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCTGG-GTAGTGCCCGCCCGCCCG-C
* * *
1743488 CGCTCGTTTCGTC-AGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACC
389 AGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACC
*
1743552 AAGGGTTG
453 GAGGGTTG
1743560 TGGGTGCACA
Statistics
Matches: 1196, Mismatches: 116, Indels: 62
0.87 0.08 0.05
Matches are distributed among these distances:
861 202 0.17
862 78 0.07
863 7 0.01
865 1 0.00
867 1 0.00
876 98 0.08
879 1 0.00
881 2 0.00
886 3 0.00
891 3 0.00
895 5 0.00
896 155 0.13
897 89 0.07
898 154 0.13
899 36 0.03
900 117 0.10
901 244 0.20
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.25
Consensus pattern (888 bp):
CAGTTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACT
TCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
TGGGCAAAACCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
AAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTTTGGCTGGGTAGTGCCCGCCCGCCCGCAG
CTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATCGGACCAGACCGAG
GGTTGCAATAGCAGGATCAAAAGCACACTGAGGGGACCCGACCAAGCCCCGACTTGCACATCCTG
CCCCTCTAGCCGGCTGAGCACCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATCCGACCGGACCAAGGGTTGCGGGTGC
ACAGGCTGGGCTCGGGCATGTGCTAGTGCCGCATTTTCTTTCACCCAGGGCACCATCACCGGAGC
ATCACCGAAGAACCTGACCGACGGCATTGGGGTTCCAGCAATTGGGGGGCCGGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
Found at i:1746108 original size:891 final size:886
Alignment explanation
Indices: 1743518--1747445 Score: 4992
Period size: 891 Copynumber: 4.4 Consensus size: 886
1743508 TTAGGCATAT
* *
1743518 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGGTGCACATGCTGGGCTCGGA
1 GGAGTTCATT-CCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGG
* * * *
1743583 CATGTGCTGGTGCCATATTTTTTTTTGCCCGGGGCACCATCACCGGAGAACCTGACCGACGGAAT
65 CATGTGCTGGTGCCGTATTTTTTTTTGCCCGGGCCACCATCGCCGGAGAACCTGACCGACGGCAT
* * *
1743648 TGGGGTTCCGGCGATTGGGGGGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
130 TGGGGTTCCGGCGATTGGGGGGACGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
1743713 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
195 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * * *
1743778 TTGAGATTTTACAAGTTTGCTGCCGGTAGCCATTTAAGTGTTTGAAATGGGGACACTTTTTTCAA
260 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
*
1743843 ATGGTGACAAAATCCTGTACACTTTGAGTTTTTAGCTG-ATATTTTTTGTGCATGCCAACAAAAA
325 ATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAA
* * *
1743907 TACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACT-CTTCTGAAAAAATTTTTAAAAAAATCC
389 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAA-ATTTAAAAAAATCC
* * * *
1743971 TGGACCGTAAAAAGTTTCAAATAATCGTGTGCCAAAGTAGATAAAACGAGTCGTCTTGCCATG-A
453 CGAACCGTAAAAAGTTTCAAA-AATC--GTG-AAAAATAG--AAAACGAGTCGTCTTGCCATGAA
* * *
1744035 ACTTCACATGGAGGCTTAAGGGACCATTGT-TGAATCTTACGAGCCAT-AAAA-GGCATTGGCAC
512 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT-TTACAAGCCATAAAAATGGCATTGGCAT
* * * *
1744097 AGCAAAAATATCGGAACATGTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAT
576 GGCAGAAATAT--GAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
1744162 CCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG-CACGCTCGCTCGTTTCGCCAGTTGGCTTAGGC
638 CCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGTC-CGC-CGCTCGTTTCGTCGGTTGGCTTAGGC
* ** * *
1744226 ATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGA-TCGAGGGTTGTCG-CAGCAGGATTGGTG
701 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTG-CGACAGCAGGATCGGTA
* * ** * * ** *
1744289 GCACACTGAGGGGGACCTGGCCGATTCCCGGCTTGCACATCCTGCCCCTCTGGCCGGCTGAGCAC
764 GCACGCTGAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* *
1744354 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTTATTCCCAGTCTAAGCATGC
829 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A--C
* * * * *
1744415 GGAGGTCATTCCTAGTATAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATACTGGGCTCGGC
1 GGAGTTCATTCC-AGTCTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGG
* * *
1744480 CATGTGCTGGTGCAG-CTTTTTTTTT-CACCTGGGGCACCATCGCCGGAGCATCGCCGAAGAACC
65 CATGTGCTGGTGCCGTATTTTTTTTTGC-CC--GGG--CCA----C----CATCGCCGGAGAACC
* * * *
1744543 AGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCGGGCTGGGTGTGCGCACATGATGTGCGA
117 TGACCGACGGCATTGGGGTTCCGGCGATTGGGGGGACGGG-GGGGTGTGCGCACATGATGTGCGA
* * *
1744608 AGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTGAGAACTCACACC
181 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
1744673 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTA-TAGCCATTAAAGTGTCTGAAATGG
246 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAAATGG
* *
1744737 GGACACCTTTTTCAAATGATCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
310 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
*
1744802 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT-AAAAAAA
375 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAA
* * *
1744866 CTTTAAAAAAATCCCGAACTGTAAAAAGTTTCCAAAATCGTGAAAAATA-AAAACGAGTCATCTT
440 -TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1744930 GCCATGAAACTTCACATGAAGGCTTAAGGGATCATTGTATGAATTTACAAGCCATAAAAATGGCA
504 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
1744995 TTGGCATGGCAGAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
569 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1745060 GTATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTA
634 GCATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGTCC-GCCGCTCGTTTCGTCGGTTGGCTTA
* * ** * * ** **
1745125 GGCATATGGAGTTCATTTCCAGTCTAAGATTGGACCAAACTGAGCGTTGCGGTAGCAGGATCGAC
698 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGT
* *
1745190 AGCACGCTGAAGGGGACCCGATCGATCCCCAGCTTGTGCATCCTGCCCCTCTGGCCGGATGAGCG
763 AGCACGCTGAGGGGGACCCGATCGATCCCCAGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCG
*
1745255 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCACAC
828 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG---AC
* ** * *
1745317 GGAGTTCATTCCTAGTCTAAGATTGGACCAGACTGAGGGTTACGGG-GCACATGCTGGGCTAGGG
1 GGAGTTCATTCC-AGTCTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGG
* * * *
1745381 CATGTGCTGGTGCCGTATTTTTTTTTGCCCGAGCCCCCATCGCCGGAGAACCTTACCGACGGCAA
65 CATGTGCTGGTGCCGTATTTTTTTTTGCCCGGGCCACCATCGCCGGAGAACCTGACCGACGGCAT
* * * * *
1745446 TGTGGTTCCGACGATTAGGGCGGACGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTGC
130 TGGGGTTCCGGCGATT-GGGGGGACGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
1745511 TTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
194 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
1745576 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
259 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
1745641 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAA
324 AATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAA
* * *
1745706 ATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAATCCTT-TTAAAAAAATTTAGAAAAATCC
388 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAATTTAAAAAAATCC
* * *
1745770 CGGACAGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
453 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
*
1745835 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCATGGCAGAA
518 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* * * *
1745900 ATATGAAGATGTGCCCAAACCCACCTACCACCCTATCAATCAACGGCTTGTGCA-CCTCGCCTCT
583 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-CGCCTCT
* *
1745964 CTGGCCGGCGTAATGCTCACCCGTCCGCCGGCTTC-TTTCGTCGGTTGGCTTAGGCATACGGAGT
647 CTGGCCGGCGTAGTGCCCACCCGTCCGCC-GC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * *
1746028 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCTACAGCAGGATTGGTAGCACGTTGAGG
710 TCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGTAGCACGCTGAGG
* * * *
1746093 GGAACCCGGTCGATCCCCAGCTTGTGCATCCTGCCCCAT-TAGCCGGCTGAGCGCCCGCATGCTC
775 GGGACCCGATCGATCCCCAGCTTGTGCATCCTGCCCC-TCTGGCCGGCTGAGCGCCCGCACGCTC
* *
1746157 GTTTCATGGGGTGACTTAGGCATAC--AG---------AGT-T----C
839 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAC
* * * * * *
1746189 --A-TTC---CCAATCTAAGATTGGACCGGATCAAGGGTTGCGGTTGCACATGCTGGGCTCGAGC
1 GGAGTTCATTCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
* * * * *
1746248 ATGTGCTGGTGCCGCATTTTTTTTCT-CCCGGGGCACCATCGTCAGAGAACCTGATCGACGGCAT
66 ATGTGCTGGTGCCGTATTTTTTTT-TGCCCGGGCCACCATCGCCGGAGAACCTGACCGACGGCAT
* * * * **
1746312 TGGGGTTTCGTCGATTGGGGGAGTCGGGGGGGCTGTGCGCTCATGATGTGTAATGGGTGCTGGTA
130 TGGGGTTCCGGCGATTGGGGG-GACGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * * * ** *
1746377 CTTGGCCCTTATGTTCGTCCCATCTCCCTCATCAAACCTTTAGAACTCACA--CCCTTAAAGAGA
193 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
1746440 ATTTGAGATTTTACAAGTTTGATGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
258 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
1746505 AAATGGTCACAAAATCCTATACACTTTGAGTTTTTAGCTGAATTTTTTTTTGCGTGCCCACAAAA
323 AAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * ** * *
1746570 ATACAAGGATCGCGTCTACCAAGTTTGGGACTGAAAATCCTTCTG-AAAATATTTTAAAAAATCC
388 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAATTTAAAAAAATCC
* * * **
1746634 CAAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGG
453 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * *
1746699 CATGAAGGCTTAAGGGACCGTTGTATGAATTTAAAAGCCATAAAAATGTCATTGGCATGGCATAA
518 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* * *
1746764 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCGCTC
583 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * *
1746829 TGGCCGACGTAGTGCCCACCCGTCCGTCCGTTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTC
648 TGGCCGGCGTAGTGCCCACCCGTCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTC
* *
1746894 ATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGACAGTAGGATCGGTAGCACGCTGAGGGG
712 ATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGTAGCACGCTGAGGGG
* * * *
1746959 GACCCGATCGATCCCCGGCTTG-GCATCCTGCCCCTCTGGCCGGTTGAGTGCCCACACGCTCGTT
777 GACCCGATCGATCCCCAGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
1747023 TCGTGGGTTGACTTAGGCATAC-G-G---------AGT-T----C
842 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAC
*
1747052 --A-TTC---CCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCAGGC
1 GGAGTTCATTCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
* * * *
1747111 ATGTGCTGGTGCCGTA-TTTTTTTCGCTCGGGGCACCATCGTCAAAGCATCATCGAGGAACCTGA
66 ATGTGCTGGTGCCGTATTTTTTTTTGCCCGGGCCACCA---TC---GC--C--GGA-GAACCTGA
* * *
1747175 CAGACGCCATTGGGGTTCCGGCGATTGGGGGGTC-GGGGGGTGTGCGCACATGATGTGCGATGGG
120 CCGACGGCATTGGGGTTCCGGCGATTGGGGGGACGGGGGGGTGTGCGCACATGATGTGCGATGGG
1747239 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
185 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
1747304 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTTGAAATGGGGACA
250 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
1747369 GTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGC
315 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGC
1747433 CAACAAAAATACA
380 CAACAAAAATACA
1747446 NNNNNNNNNN
Statistics
Matches: 2681, Mismatches: 286, Indels: 154
0.86 0.09 0.05
Matches are distributed among these distances:
862 19 0.01
863 130 0.05
864 365 0.14
865 163 0.06
866 94 0.04
867 72 0.03
868 1 0.00
869 3 0.00
870 75 0.03
871 42 0.02
872 102 0.04
873 34 0.01
879 1 0.00
880 3 0.00
889 3 0.00
890 296 0.11
891 392 0.15
892 3 0.00
894 1 0.00
895 1 0.00
896 13 0.00
897 69 0.03
898 5 0.00
900 4 0.00
901 31 0.01
902 325 0.12
903 49 0.02
904 12 0.00
905 23 0.01
906 3 0.00
908 52 0.02
909 288 0.11
910 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
GGAGTTCATTCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGTATTTTTTTTTGCCCGGGCCACCATCGCCGGAGAACCTGACCGACGGCATT
GGGGTTCCGGCGATTGGGGGGACGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAATTTAAAAAAATCCCGA
ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGG
CCGGCGTAGTGCCCACCCGTCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGACAGCAGGATCGGTAGCACGCTGAGGGGGACC
CGATCGATCCCCAGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAC
Found at i:1748662 original size:26 final size:26
Alignment explanation
Indices: 1748626--1748676 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1748616 GTTGACTTAG
*
1748626 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1748652 GCATACAGAGTTCATTCCCAGTCTA
1 GCATACAGAGTTCATTCCCAGTCTA
1748677 TGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1749388 original size:26 final size:26
Alignment explanation
Indices: 1749352--1749402 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1749342 TGACTTAGGC
*
1749352 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGAAGTTCATTCCCAGTCTAAGG
1749378 ATACGAAGTTCATTCCCAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
1749403 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGG
Found at i:1752050 original size:26 final size:26
Alignment explanation
Indices: 1752014--1752064 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1752004 TTGACTTAGG
*
1752014 CATACGGAGTTGATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
1752040 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
1752065 GATCGGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:1759436 original size:26 final size:26
Alignment explanation
Indices: 1759398--1759450 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1759388 GTTGAGTTAG
1759398 GCATACGAGGTTCATTCCCAGTCTAA
1 GCATACGAGGTTCATTCCCAGTCTAA
**
1759424 GCATACG-GAGTTCATTCGTAGTCTAA
1 GCATACGAG-GTTCATTCCCAGTCTAA
1759450 G
1 G
1759451 ATCGTACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGAGGTTCATTCCCAGTCTAA
Found at i:1761702 original size:877 final size:876
Alignment explanation
Indices: 1755914--1765085 Score: 10565
Period size: 899 Copynumber: 10.4 Consensus size: 876
1755904 TCATTTTATC
* * * * ** * *
1755914 GGTTGGCTTAAGCATACGGAGTTCATTCCCAGACTAAGATCAAAAGGGATCGAGGGTTACGGGTG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGGTG
* ** * * * * *
1755979 CACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTTTTCACTC-GGCCGCCATCGTCGGAG
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGAG
** * * * * * *
1756043 CATCGCCAAAGAACCTGACTGGCGACATTAGGGTTCTGGCGATTAGGGGGGCCGAGGGGTGTGCG
131 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATT-GGGGGGGCGGGGGGTGTGCG
*
1756108 CACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
195 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
1756173 CGAGAACTCAAACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAA
260 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
1756238 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGTGTTTTTAGCT
325 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
* * * *
1756303 GAACTTTTTTATGCATGCCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
390 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * *
1756368 CTTCTGAAAAAA-TTGAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAGCGTGAAAAATAGAAA
455 CTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
1756432 ACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
520 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * *
1756497 ATAAAATTGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGA
585 ATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * * *
1756562 TCCACGGCTTGCACATCCCGTCTCTCCGACCGACGTAATGCCCGCCCGCCCGCCCGCTCGTTTCG
650 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCG
* *
1756627 TCGGTTGGCTTAGGCATTCGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTGCGG
715 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCAGACCGAGGGTTGCGG
* * * * ** *
1756691 CAGTAGGATC-AGCAGCATGCCAAGGGGGACCCGCCCGATCCCCAACTTGCGCATCCTGCCCCTT
780 CAGCAGGATCGA-CAGCACGCTAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTC
* *
1756755 TGGCCGACTGAGCGCCCGTACGCTCGTTTCGTG
844 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * * **
1756788 GGTTGACGTAGGCATACAGAGTTCATTCGCAGTCTAAGATTGGACCGGACAAAGGGTTGCGGGTG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGGTG
** * * * *
1756853 CACATGCTCAGCTCGGGCATGCGTTGGTGCCGTATTTTTTTTCACCCGGGGCACCATCGCCAGAG
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGAG
** * * * * *
1756918 CATCATCAGAGAACCTGACCGACGGCATTGGGGTTTTTGCGATTGGGGGGGCTGGGGGGGTGTGC
131 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATTGGGGGGGC--GGGGGGTGTGC
*
1756983 GCACATGATGTGCGATGGGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCCCATCAAACC
194 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * * *
1757047 TTGAGAACTAACA-CCCCTTAAAGAGCATTTGATATTTTATAGGTTTGCTGCCAGTAGCCATTAA
259 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * * *
1757111 AATGTCTAAAATGGGGACACTTTTTTCAGATGGTCACAAAATCATGTACACTTTGAGTTTTTAGC
324 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
* *
1757176 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACT
389 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * * *
1757241 CCTTCTAAAAAAATGTTAAAAAAATCTCAAACTGTAAAAAGTTTGAAAAATTATGAAAAATAGAA
454 CCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
*
1757306 AATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
519 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
1757371 CATAAAAATGGCATTGGCATGATAGAAATATGAAGACGTGCCTAAACCCACC-ACCACCCTATCG
584 CATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* *
1757435 ATCAACGGCTTGCGCATCACGCCTCTCTGGCCGGCGTA------G--TGCCCG--C-C-CGTTTC
649 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTC
* * * * *
1757488 GTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTAGACT-AGACTGAGGGCTGAG
714 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCAGACCGAGGGTTGCG
* * ** * * * *
1757552 GTAGTAGGA-CTGGTAGCACGTTGAA-AGGGACCCGACCGATCTCTGGCTTGCGCATCCTGCCCC
779 GCAGCAGGATC-GACAGCACGCT-AAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCC
* * *
1757615 TCTGGCCGGTTGAGCACCCGTACGCTCGTTTCGTG
842 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * * *
1757650 CGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTGCAGGTG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGGTG
* * * ** *
1757715 CACATGCTGGGCT-----ATGTGATGGTGCTGTA-TTTTTTTCACGTGGGGCACCATCACCGGAG
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGAG
** * * * *
1757774 CATCATCGGAGAACCTGATCGGCGACATTGGGG-TCCGGTGATTGGGGGGGTCAGGGGGTTGTGC
131 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATTGGGGGGG-C-GGGGGGTGTGC
* * *
1757838 ACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACC
194 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
1757903 TCAAGAACT--CACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
259 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
1757966 AGTGTCTGAAATGGGGGCTCTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGC
324 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
* * *
1758031 TGAATGTTTTTT-AGCATGCTC-AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCAAAA
389 TGAAT-TTTTTTGTGCATGC-CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * *
1758094 CTCCTTCTAAAAAAATTTT-AAAAAATCCTGAACCGTAAAAAAGTTTCAAAAATCGTGAAAAATA
452 CTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATA
1758158 -AAAACGAGTCAGTCTTG-CATGAAACTTCACATG-AGGCGTTAAGGGACCATTGTATGAA-TTA
516 GAAAACGAGTC-GTCTTGCCATGAAACTTCACATGAAGGC-TTAAGGGACCATTGTATGAATTTA
1758219 CAAGCCCATAAAAACTGGCA-TGGCATAGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
579 CAAG-CCATAAAAA-TGGCATTGGCAT-GGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * *
1758283 CCCTATCGATCCACGACTTGCGCATCCCGCCCCTTTGGCCGACGTAGTG--C-CC-GCCCGCCTG
641 CCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCG
* * * * * *
1758344 CTCATTTTGTCAGTTGGCTTCGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAC-CAGACTGA
706 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCAGACCGA
** * * ** * *
1758408 GGGTTGCGGCAGCAGGATCGGTAGCACGCTGAGAGGGACCCGATTGATCCCTGGCTTGCGCACCC
771 GGGTTGCGGCAGCAGGATCGACAGCACGCTAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * ** ** * * * *
1758473 GGCCCTTCTGGCTAGCTGAAAGCCCACACGCTCATTTTGTT
836 TGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * *
1758514 GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGATAGGACTGGACCGAGGGTTGCGGGTG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGGTG
** * * * *
1758579 CACATGCTGGGCTCAAGCATGTGCTGGTGCCGTATTTTTTTTCACCCGAGGCACCATCACTGGAG
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGAG
* * * * * ** *
1758644 CATCGTCGGAGATCCTGACCGGTGGCATTGGGTTTCCGACGATTAGGGGGGTCGGGGGGTGTGCG
131 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATT-GGGGGGGCGGGGGGTGTGCG
* * *
1758709 CACATGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTTGCCCCCTATCTCTCATCAAACCT
195 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
1758774 TGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
260 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * ** * *
1758838 GTGTCTAAAATGGGGACACATTTTTCAAATGGTCACAAAATATTGTACACTCCTAGTTTTTAGCT
325 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCT
* *
1758903 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATC
390 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* **
1758968 CTTCTGAAAAAATTTAAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCAT-AAAAATAGAAA
455 CTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAA
*
1759032 ACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
520 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * * *
1759097 ATAAAAATGGCATTGGCATGGCAAAAATTTGAAGATGTGCCAAAACCCACCTACTACCCTATCGA
585 ATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * ** *
1759162 TCCACGGCTTGTGCATCCGGCCTCTCTCGCCGGCGTAGTGCCCGCCCTG-CTGCCAACTCTTTTC
650 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCTGCCCGCCCGCTCGTTTC
* * * * *
1759226 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATCAGAC-CGGACCGATGATTCCG
714 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCAGACCGAGGGTTGCG
* * * * * * *
1759290 GTAGCAGGATC-AGCA-TACGCTGAGGGGGACCCAACCGATCCTCAGCTTGTGCATCCTGCCCCT
779 GCAGCAGGATCGA-CAGCACGCTAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCT
* *
1759353 CTGGTCGGCTGAGCGCCCGCACGCTCATTTCGTG
843 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
*
1759387 GGTTGAGTTAGGCATAC-GAGGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCGTAGTCTAAG
1 GGTTGACTTAGGCATACGGA-GTTCATTCCCAGTCTAAG-AT-C---G---A-----A--C----
* *
1759451 ATCGTACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTT
46 --CG-----GACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTT
** * * * * ** *
1759516 TTTTCGCCCGTTGCACCATCGTCGGAGCATTGTCGGAGAACCTAACCGATGGCATTGAGGTT-TC
104 TTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCT-
* * * * * *
1759580 GGGGATTGGGGGGCCGGGGGGTATGCGCACATGATGTGCGTTGGATGCTGGGACTTGGCCCTTAT
168 GGTGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
1759645 ATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAGGAGCATTTGAGATTTT
233 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
1759710 ACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
298 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * ** * *
1759775 AATCCTATACACTACGAGTTTTTAGCTGAACCTTTTTGTGCATGCCCACAAAAATACAAGGATCA
363 AATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCA
* * *
1759840 CTTCTACCAAGTTTGGGGCAAAAACT-C--CTGAAAAAA-TTT-AAAAAATCCCGAACTGTAAAA
428 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAA
* * * * * * * *
1759900 AGTTTTAAAAGTCGTGAAAAGTACAAAGCGAGCCGTCTTGCCATGGAACTTCACATGAAGGCTTA
493 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
*
1759965 AGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGT
558 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGT
* * *
1760030 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCACGCCTCTCTGGCCGGCATAG
623 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAG
* * * * ** * *
1760095 TGCCTGCCCGCCTGCCCGTTCGTTTCACCGGCTGGCTTAGGCATATGGAGTTCATTCCCAGTCTA
688 TGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
1760160 AGATCAGA-TCAGACAGAGGGTTGCGGTC-GTAGGATC-AGCAGCACGCTGAGGGGGAGCTGACC
753 AGATCAGACTCAGACCGAGGGTTGCGG-CAGCAGGATCGA-CAGCACGCTAAGGGGGACCCGACC
* *
1760222 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTAAGCGCCCGTACGCTCGTTTCGTG
816 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * * * *
1760283 GGTTGACTTAGGCCTACGAAGTTCATTCCAATTCTAAGATC-AGATCGGACCCAGGGTTGCGAGT
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGGT
* * *
1760347 GCACTTGCTGGGCTCGGGCATGTGCTGGTACCGTATTTTTTTTCGCCCGAGGCACCAT-------
65 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGA
* **
1760405 -CAT---CGGAGAACCTGACCGACGGCATT-GGGTT-TCATGATT-GGGGGGCGGGGGGTGTGCG
130 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATTGGGGGGGCGGGGGGTGTGCG
* *
1760463 CGCATGATGTGCGATGGGTTG-TGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACC
195 CACATGATGTGCGATGGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* * *
1760527 TCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGACAATAGCCATTAA
259 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
1760592 AGTGTCTAAAATGGGGACACTTTTTTCAAATGGTTACAAAATCCTGTACACTTTGAGTTTTTAGC
324 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
* **
1760657 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTTTAAAAAGTTTGGGGCCAAAACT
389 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * *
1760722 CCTTCTAAAAAAATTTAAAAAAAATCCCAAACCGAAAAAATTTTCAAAAATCATGAAAAATAGAA
454 CCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
1760787 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
519 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
1760852 CATAAAAATGGCATCGGCATGGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
584 CATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * ** *
1760917 ATCCACGGCTTGCGCATCCTGTCTCTGTTGCCGGCGAAGTGCCCGCCTGCCCGTACGCTCGTTTT
649 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTC
* * * ** * * *
1760982 ATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTGGACTGA-ACTGAGGGTTGTG
714 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCAGACCGAGGGTTGCG
* ** * ** *
1761046 GCAGCAGGATCGATAGCACGCTAAGGGGGACCCGGTCGATCCCCGACTTGCAAATCCTACCCCTC
779 GCAGCAGGATCGACAGCACGCTAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTC
* * * * *
1761111 TAGCCGGCTGAGCGCCCGTAAGCTCATTTCGTC
844 TGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * *
1761144 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCCAGGGTTACAGGTG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGGTG
* * ** **
1761209 CATATGTTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGCCAAAG
66 CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGAG
* * *
1761274 CATCGCCGGAGAACCTGACCGGTGGCATTGGGGTTCTAGAGATTGGGGGGGTCGGGGGGATGTGC
131 CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATTGGGGGGG-CGGGGGG-TGTGC
* * * * *
1761339 GCACATGATCTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCACATCAATCC
194 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
1761404 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
259 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * * *
1761469 ATTGTCTAAAATGGGGAGACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGC
324 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC
* * * * **
1761534 TAAATTTCTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGATGCCAAAACT
389 TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * * * *
1761599 CCTTCCGAAAAATTTTTTAAAAAATCCCGAACCATCAAAAGTTTCAAAAATCGTGAAAAATAGAA
454 CCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * *
1761664 AACGAGTAGTCTTCCCATGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGC
519 AACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
1761729 CATAAAAATGGCATTGGCATGGTAGAAATATGAAAATGTGCCTAAACCCACCAACCACTCTATCG
584 CATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
1761794 ATCCACCGCTTGCGTATCCCGCCACTCTAGCCGGCGTAGTGCCTGCCCT-CCCGCCCGCTCATTT
649 ATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCG-CCTGCCCGCCCGCTCGTTT
* * * *
1761858 CATCGGTTGGCTTAGGCATACGGAGCTCATTCCCAATCTAAGATCGGAC-CAGACCGAGGGTTGC
713 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCAGACCGAGGGTTGC
* * ** * * * * * * **
1761922 AGTAGCAGGATCGGTAGCATG-TAGAGGGGGACCTGGCCGATCCCCGGTTTGTGCATCCTACCTT
778 GGCAGCAGGATCGACAGCACGCTA-AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCC
* *
1761986 TCTAGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
842 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* *
1762021 GGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATGCAGAGTTCATTCCCAATCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C---G---------AA-C-----
* *
1762086 TCGGATCAGACCGAGGGTTACAGGTGCACATG-TCGGGCTCGGGCATGTGCTGGTGCC-TCATTT
46 -C-G----GACCGAGGGTTGCGGGTGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGT-ATTT
* * ** * * *
1762149 TTTTTCGCCTGGGCCACCATCATCGGAGCATCACC-GATGAACCTTACCGGCGGCATTGGGGTTT
103 TTTTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGA-GAACCTGACCGGCGGCATTGGGGTTC
* * * * *
1762213 TGGCGATT-AGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGCTACTTGGACCTCA
167 TGGTGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
1762277 TATTGGACCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTT
232 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
1762341 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACA
297 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
1762406 AAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGAGCATGCCAAAAAAAATACAAGGATC
362 AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* * * * * * *
1762471 ATGTCAACCAATTTTAGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAAATCTCGAACCGTAAA
427 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAA
* *
1762536 AAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACATGAAGGCTT
492 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
* * * *
1762601 AAGGGACCATTTTATAAAGTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAAATG
557 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATG
* * *
1762666 TGCCTAAACCCACCTTCCACCCTATCGATCCACCGCTTGCGCATCCCGCCACTCTGGCCGGCGTA
622 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA
* * *
1762731 GTGCCCGCCCTCCCGCCCGCTCGCCCGCTCATTTCGTTGGTTGGCTTAGGCATATGGAGTTCATT
687 GTGCCCG-CCT---G--C-C-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * *
1762796 CTCAGTCTAAGATCAGAC-CAGACCGATGGTTGCAGCAGCAGGATCGGCAGCACGCTGAGGGGGA
744 CCCAGTCTAAGATCAGACTCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTAAGGGGGA
* * * * * * *
1762860 CCCAACCGATCCCCGGCTTGCGCATCATGCCCCCCTGGTCGGTTGAGTGCCCGCACGTTCGTTTC
809 CCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
1762925 GTG
874 GTG
*
1762928 GGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-GA----A----C---C---G-
* *
1762993 TCAGACCGAATTGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
48 ---GACC-----GAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
* * * * * *
1763058 TTTTGCCCGGAGCACCAT---C---G--T--CC-TAGAACCTGACCGACGACATTGGGGTTCCGG
105 TTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGG
*
1763112 TGATTGGGGGGGCGGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGT
170 TGATTGGGGGGGC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
1763177 ATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC-CTGCCCCCTTAAATAGCATTTGAGATTT
233 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCCTTAAAGAGCATTTGAGATTT
* * *
1763241 TACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGAGGACACTTTTTTCAAATGGTCAGA
297 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
1763306 AAATCCCGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
362 AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
* *
1763371 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAAATTTTTAAAAAAATCCCGAACCATAA
427 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTTAAAAAAATCCCGAACCGTAA
* *
1763436 AAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
491 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* * ** *
1763501 TAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATAGCATTGGCACAGCAGAAATAT-AAGAT
556 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGAT
* * * *
1763565 GTGCCTAAACCCACCTACCAACCTATCGATCCATGGCTTGCGCGTCCCGCCTCTCTGGCCAGCGT
621 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGT
** * * * *
1763630 AGTGCCCGCCTGCCCGCCCTTTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTCATTCCCAATT
686 AGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
1763695 TAAGATCAAAC-CAAATCAAGGGTTGCGGTAGTAGGATC-AGCAGCACG-TAGAGGGGGACCCGA
751 TAAGATCAGACTCAGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCTA-AGGGGGACCCGA
* *
1763757 CCGATCCCTGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG-TTCTGTG
814 CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC-GTG
1763820 GGTTGACTTAGAGGTACGGAGTTCATTCCCAATCTAAGTATGTGGAGTTCATTCCCAGTCTAAGA
1 GGTTGAC-T-----TA--G-G--CA-T----A-C---------GGAGTTCATTCCCAGTCTAAGA
* * * **
1763885 TCGAATCGGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA-TTTT
40 TCGAACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTT
* * * * *
1763949 TTTCACCC-AGG-A--A-------ACCATCGCCGGAGAACCTGACCGACGACATTGGGGTT-TCG
105 TTTCGCCCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCT-G
**
1764002 ACGATT-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
169 GTGATTGGGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
1764066 ATTGGCCCCCTATCCAC-CATCAAACCTCAAGAACTCAC-GCCCCTTAAAGAGCATTTGAGATTT
233 ATTGGCCCCCTATCC-CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
1764129 TATAGGTTTGCTGCCAGTAGCCATTAAAGTATCT-AAATGGGGACACTTTTTTCAAATGGTCACA
297 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
1764193 AAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGGCAAAAAAAAAATACAAGGA
362 AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT-GC-CAAAAAAAATACAAGGA
* * * * * *
1764258 TCATGTCTACAAAGTTTGGGGCCAAAAATCTTTCTGAAAAAAATTAAAAAAAATCCCGAACCGT-
425 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCGAACCGTA
* * *
1764322 AAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCATCTTGCCAAGAAACTTCACATGAAGGC
490 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
* * ** * *
1764387 TTAAGGGACCATTGCATGAATTTAGAAGTGATAAAAAAGGCATTGGCATGGCAGAAATATGAAGA
555 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGA
* * * * * *
1764452 TATGCCTAAACCCACCTATCACCCTATCGATCCACGGCTTGTGCATCCCGCCTCCCTGGCTGACG
620 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCG
* * * * *
1764517 TAGTGCCCGCCCGCCCGCCCGCTCATTTCGTTGTTTGGCTTAGGCATACGGAGTTCATTCCCAAT
685 TAGTGCCCGCCTGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * ** * * * *
1764582 CTAAGATTAGACT-GGACCGAGCATTGCTGCAGCAGGATCTG-CAGCAC-ATGAGGGGGACCTGA
750 CTAAGATCAGACTCAGACCGAGGGTTGCGGCAGCAGGATC-GACAGCACGCTAAGGGGGACCCGA
* * * * *
1764644 CCGATCCCCGGCTTGCCCATCCTGCACCTCTAGCTGGCTGAGCGCCCGTACGCTCGTTTCGTG
814 CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * *
1764707 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGAATCGAGGGTTACGGGT
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGGT
* * *
1764771 GCACATGCTGGGCTCAGGCATGTGCTGATGCCGTA-TTTTTTTCGCCCAGGG---CA---CC---
65 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGA
* * * * *
1764826 G--TCGCCAGAGAACCTGACCGGCGGCCTTGGGGTTCTGCTGATTGGGGGGCGGGGGAGGGGGCG
130 GCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATT--GGGG-GGGCG-GGGGGTG
* * * *
1764889 TGCGCACATAATGTGTGATGGATGCTGGTACTTGGTCCTTATATTGGCCCCCTATCCCT-ATCAA
191 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
1764953 ACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCAT
256 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
1765018 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
321 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
1765083 AGC
386 AGC
1765086 CATAAAAATG
Statistics
Matches: 7138, Mismatches: 918, Indels: 492
0.84 0.11 0.06
Matches are distributed among these distances:
853 11 0.00
854 75 0.01
855 290 0.04
856 390 0.05
857 20 0.00
858 5 0.00
859 29 0.00
860 9 0.00
861 563 0.08
862 215 0.03
863 6 0.00
864 229 0.03
865 119 0.02
866 60 0.01
868 1 0.00
869 17 0.00
870 296 0.04
871 262 0.04
872 59 0.01
873 100 0.01
874 402 0.06
875 251 0.04
876 55 0.01
877 632 0.09
878 7 0.00
879 2 0.00
881 2 0.00
882 1 0.00
883 1 0.00
886 2 0.00
887 253 0.04
888 229 0.03
889 134 0.02
890 14 0.00
891 47 0.01
892 194 0.03
893 2 0.00
894 36 0.01
895 246 0.03
896 141 0.02
897 13 0.00
898 94 0.01
899 745 0.10
900 326 0.05
901 144 0.02
902 17 0.00
903 108 0.02
904 3 0.00
905 2 0.00
906 1 0.00
907 247 0.03
908 3 0.00
909 1 0.00
911 1 0.00
915 2 0.00
916 1 0.00
917 2 0.00
918 21 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (876 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGGTG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCGCCGGAG
CATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGTGATTGGGGGGGCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTCTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGCCCGCTCGTTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTCAGACCGAGGGTTGCGGC
AGCAGGATCGACAGCACGCTAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTG
GCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
Found at i:1762066 original size:26 final size:26
Alignment explanation
Indices: 1762032--1762084 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1762022 GTTGACTTAG
* *
1762032 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
1762058 GCATGCAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1762084 G
1 G
1762085 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1762975 original size:26 final size:26
Alignment explanation
Indices: 1762939--1762991 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1762929 GTTTACTTAG
*
1762939 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1762965 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1762991 G
1 G
1762992 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1767167 original size:26 final size:26
Alignment explanation
Indices: 1767138--1767188 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1767128 TGACATAGGC
1767138 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACGGAGTTCATTCCCAGTCTAAGT
*
1767164 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
1767189 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGT
Found at i:1767586 original size:902 final size:890
Alignment explanation
Indices: 1765812--1771438 Score: 6488
Period size: 902 Copynumber: 6.4 Consensus size: 890
1765802 AACAATTTTG
*
1765812 AAAAATTTT--AAAAATCCCGAACTGTAAAAA-TTTTGAAAATCGTGAAAAATAGAAAACGAGTC
1 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
* * *
1765874 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTAAAAGCCAAAAAAA
66 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
1765939 TGGCATTGGCAT-GCTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
131 TGGCATTGGCATGGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * ** * ** *
1766003 GCTTACGCATCCCGCCTCTCTGGCCAGCATAGTGCTTGACCG-CTCGCCCATTCATTTCGTCGGT
195 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCT-GCCCGCTCGTTTCGTCGGT
* * * * *
1766067 TGGCTTAGGCATATGCAGTTCATTCCCAGTCTAAGATCAAACCAGATCAAGGGTTGCGGCAGCAA
259 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAG
* *** * * **
1766132 GATCGGTAGCACACTGAGGGGGACCCGTTTGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCTAG
324 GAT-GGCAGCACACTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGG
* *
1766197 CTGAGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
388 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AG-
* *
1766262 ATGCGAAGTTCATTCTCAGTCTAAGATCGGACCGGACTGAGGTTTGCGGGTGCACATGCTGGG-T
451 AT---AAGTTCA-TCT-AGTCTAAGATCGGACCAGACCGAGG-TTGCGGGTGCACATGCTGGGCT
* * * * * ** ** **
1766326 CAGGCATCTGCTGGTGCCGTATTTTTTTTTCGCCCGGAGCACCATTGTCGTCGCATCACCGAAGA
510 CGGGCATGTGCTGGTGCCGCA-TTTTTTTTCACCCGGGGCACCA-TCACGGAGCATCGTC-AAGA
* * * * * * * *
1766391 ACCAGACC-AGTGGCATCGGGGTTTTGATGATTGGGGGAGCCGGGGGGTGTGCGCACATGATCTA
572 ACCTGACCGA-CGGCATTGGGG-TTCGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTA
* * *
1766455 CGATGGGTGCTGGTACTTGGCCCCTATCTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
635 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
1766520 ACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TCGAAA
700 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-GAAA
* * * *
1766584 TGGGGACACTTTTTTCAAATGGTCAAAAAATCCTATACATTTCGAGTCTTTAGCTGAATTTTTTT
764 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
1766649 GTGCATGCCAAAAAAAATACAAGGATTATGTCTACCAAGTATGGGACCAAAACACCTTCCGA
829 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGA
1766711 AAAAATTTTAAAAAAATCCCGAACCGTAAAATA-TTTTGAAAATCGTGAAAAATAGAAAACGAGT
1 AAAAATTTTAAAAAAATCCCGAACCGTAAAA-AGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
*
1766775 CGTCTTGCCATGAAACTTCACATGAAGACTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
65 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
1766840 ATGGCGTTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACG
130 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
1766905 GCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGTTCGTTTCGTCGGTT
195 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTT
* * * *
1766970 GGCTTAGGCATACGGAGTTAATTCCCAGTCTAAGAT-TGTACCAGATCGAGGGTTGCTGTAGCAG
260 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGATCGAGGGTTGCGGCAGCAG
* * * * * *
1767034 GATTTGCAACACACAGAAGGGGACCCGACCGATCCTCGACTTGCACATCCTGCCCCTCTGGCCGG
324 GA-TGGCAGCACACTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGG
* * * * *
1767099 CTGAGTGCCTGCACGCTCGTTCCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGT
388 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AG-
* *
1767164 ATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCGAGTATTGCTGGTGCACATGCTGGGCT
451 ATA---AGTTCA-T-CTAGTCTAAGATCGGACCAGACCGAG-GTTGCGGGTGCACATGCTGGGCT
* * * * *
1767229 CGGGGATGTGCTGGTGCCGCATTTTTTTTCACTCGGGCCACCATCGACGTAGCATCGCCAAAGAA
510 CGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATC-ACGGAGCATCGTC-AAGAA
* * *
1767294 CCTGACCGACGGCATTAGGGTTCTGACGATTGGGGGGGTCGGGGGGGTTGTGCGCATATGATGTG
573 CCTGACCGACGGCATTGGGGTTC-GACGATTGGGGGGG-CGGGGGGG-TGTGCGCACATGATGTA
* * *
1767359 CAATGGGTGCTGGTACTTGG-CCAT-TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
635 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
1767422 ACCCCCTTAATA-AGCATTTGAGATTTTACTGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAA
700 ACCCCCTTAA-AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
1767486 TGGGGACACTTTTTTAAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTT
764 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
1767551 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCTTTCTGA
829 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCTGA
* * * ** ** ** *
1767613 AAAAAATTAAAAAAAATCTCGAATTGTAAAAAGTTTCAAAAATTATGGAAAATAGAAAACGAGTC
1 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
1767678 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTTA-AAGCCATAAAA
66 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAA
* * * *
1767742 ATGGCATTGGCATGACATAAACATGAAGATGTGCCTAAACCCAGCTACCACCCTATCGATCCACG
130 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
1767807 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTT
195 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTT
1767872 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-CTGAGGGTTGCGGCAGCAG
260 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATC-GAGGGTTGCGGCAGCAG
* ** * * * *
1767936 GATTGACAGCATGCTGAGGGGGACCCGACCGATCCCCGTCTTGCGCATCCTACTCCTCTGGTCGG
324 GA-TGGCAGCACACTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGG
* * * *
1768001 CTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACATAGGCTTACGGAG-----T-----TC---AT
388 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGAT
* * *
1768053 ---TTCA---AGTCTAAGATGGGACCAGACCGAGGGTTGCGGGTGTACATGCTGGGCTTC-GGCT
453 AAGTTCATCTAGTCTAAGATCGGACCAGACCGA-GGTTGCGGGTGCACATGCTGGGC-TCGGGCA
* * * * * * *
1768111 TGTGCTGGTGCTGCATTTTTTTTCTCCCGGGCCAACATCAC-CAGACTATCGATCGAGAACCTGC
516 TGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCACGGAG-C-ATCG-TCAAGAACCTGA
** * ** * * *
1768175 CCGGTGACATTGACGTTCCAGCGATT-GGGGGGCGGGGGTGGTGTGCGCACATCATGTGCGATGG
578 CCGACGGCATTGGGGTTCGA-CGATTGGGGGGGCGGGGG-GGTGTGCGCACATGATGTACGATGG
* * *
1768239 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCAAACCCGC
641 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
1768304 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGAC
706 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
1768369 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTAAATTGTTTTGTGCTTG
771 ACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
1768434 CCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGA
836 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGA
* **
1768489 AAAAATTTTGAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
1 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
*
1768554 GTTTTGCCATGAAACTT-AGCATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
66 GTCTTGCCATGAAACTTCA-CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
1768618 ATGGCATTGGCAGGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTATCGATCCACA
130 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
1768683 GCTTGCGCATCCCCCCTCTTTTGCCGGCGTAGTGCCCGCCCG--T--CCGCTCGTTTCGTCGGTT
195 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTT
* * * * * *
1768744 GGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGATCGGATCAGA-CCAAGGTTGCGGCAGTAGG
260 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGG
* * * ** * *
1768808 ATTGGCAGCACACAGAGGGGGACCC-AGTCGATCCCCGGCTTATGCATCCTGGCCCTCTGGCTGG
325 A-TGGCAGCACACTGAGGGGGACCCGA-CCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGG
1768872 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
388 CTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-AG-
* *
1768937 ATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTGGGTGCACATGCTGGGCT
451 ATA---AGTTCA-T-CTAGTCTAAGATCGGACCAGACCGA-GGTTGCGGGTGCACATGCTGGGCT
* * * * * *
1769002 CGGGCATGTGCCGGTGCCGAATTTTTTTTCGCCCGGGGCAACATCACCAGAGCATCGTCGGAGAA
510 CGGGCATGTGCTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCA-CGGAGCATCGTC-AAGAA
* * * * *
1769067 CCTAATCGACGGCATTGGGGTTCCGGCGATTGGGGGGGCCGAGGGGGGTGCGCGCACATGATGTG
573 CCTGACCGACGGCATTGGGGTT-CGACGATTGGGGGGG-CG-GGGGGGTGTGCGCACATGATGTA
* * * *
1769132 TGATGGGTACTGGAACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
635 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
1769197 ACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAATGTGTTTGAAAT
700 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1769262 GGGGACACTTTTTTCAAATGGT--C---A--C--T--A--T----TTTGT-GCCTGAA-CTTTTT
765 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAG-CTGAATTTTTTT
* * *
1769308 GTGCATGCCCACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTCT-A
829 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGA
* * * * * *
1769369 AAAAAATTTAAAAAAATCCTGAATCGTAAAAAGTTTCGAAAATCATGAAAAATTGAAAACGAGTC
1 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
*
1769434 GTCTTGCCATGAAACTTTACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
66 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
1769499 TGGCATTGGCATGGCAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
131 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
1769564 CTTGCGCATCCCGCCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCACTCGTTTCGTCGGTTG
196 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
* * * * * ** *
1769629 GCTTAGGCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGATAACAGGA
261 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGA
* * ** * * * * *
1769694 TCGACAACATGCTGAAGGGGACCCGACTGATCCCCGTCTTACTCATCCTGCCCCTCTGGCCGGCT
326 T-GGCAGCACACTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCT
* * * *
1769759 GAGCGCCCGCACACTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCAGTCCTAGTC----TAA
390 GAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGATAA
* * * *
1769820 G---AT-T-G-----GATTGGACC-GA--G-GGTTGCGGGTGCACATGTTGGACTCAGGCATGTG
455 GTTCATCTAGTCTAAGATCGGACCAGACCGAGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
* ** * * *
1769871 CTGGTTCTACATTTTTTTTCACCCGGGGCATCATCACCGGAGCATTGTCAAAGAACCTGATCGAC
520 CTGGTGCCGCATTTTTTTTCACCCGGGGCACCATCA-CGGAGCATCGTC-AAGAACCTGACCGAC
** * * *
1769936 GGCATTGGGGTTCCGGTGATTGGGGGGGCCGGGGGGTGTACGCACATGATGTATGATGGGTGCTG
583 GGCATTGGGGTT-CGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTG
1770001 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAG
647 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
1770065 AGCATTTGAGATTTTACAGGTTTGCTACGAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
712 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
1770130 TTCAAATGGTCACAAAATCCTGTACAGTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
777 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
*
1770195 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGA
842 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGA
* * * *
1770244 AAAAGTTTAAAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTC
1 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
* *
1770308 GTCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTCCAAGCCATAAAAA
66 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
1770373 TGGCATTGGCATGGCAGAAATGTGAAGATGTTCCTAAACCCACCTATCACCCTATCGATCCACGA
131 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * ** * *
1770438 CTTGCGCATCCCGCCTCTCTGGCTGGCATATTGCCCGCCCGCCCGCCCGCTTATTTCATCAGTTG
196 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
* * * ** *
1770503 GCTTAGGTATACGGAGTTTATTCCCAGTCTCAGATCAGACTGGATAGAGGGTT------GC--GA
261 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGA
* * * * *
1770560 ---CAGCACGCTGAGGGGGACCCGACCGATCCTCGACTTGCGCGTCCTGCCCCTCTGGCTGGCTA
326 TGGCAGCACACTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTG
* * * * *
1770622 AGTGCCCGCACATTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC----TAAG
391 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGATAAG
* *
1770683 ---ATC--G-----GATCGGACCA-A--G-GGTTGCGGGTGCACATGTTGGGCTCGGGCATGTGT
456 TTCATCTAGTCTAAGATCGGACCAGACCGAGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGC
* ** ** * *
1770734 TGGT-CCCCATTTTTTTTTTCTTGGGGAACCATCGTCGGAGCATCGT-------C-G---GA--G
521 TGGTGCCGCATTTTTTTTCACCCGGGGCACCATC-ACGGAGCATCGTCAAGAACCTGACCGACGG
*
1770785 CA-T---G--C--CGA------------GGGGGTGTGCACACATGATGTACGATGGGTGCTGGTA
585 CATTGGGGTTCGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTA
*
1770830 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGC
650 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
1770895 ATTTGAGGTTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
715 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
1770960 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
780 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
*
1771025 ATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-ATCCTTCTGA
845 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCTGA
* * ** ** *
1771071 AAGAATTTTTAAAAAATCTTGAACTATAAAAAGTTTT-AAACATCGTGAAAAATAAAAAACGAGT
1 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAA-ATCGTGAAAAATAGAAAACGAGT
* * *
1771135 CGTCTTGCGATGAAGCTTCACATGAAGGCTTAAGGGACCATTGGATGAATTTACAAGCCATAAAA
65 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
1771200 ATGGCATTGGCATGGTAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCGCG
130 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
** * * * * *
1771265 GCTTGCGCATCCCTTCTCTCCGGCTGGCGTAGTGTCCACCCGCCT----GCTCATTTCGTCGGTT
195 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTT
* * * * *
1771326 GGCTTAGGCATACGGAGTTCATTCCCATTCTAAGATCAAACCGGATAGAGGGTTGTGGCAGCAGG
260 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGG
* * * * *
1771391 ATCAGCAGC-CAACTGAGGGGGACCAGATCGATCCCCGGCTTGCACATC
325 AT-GGCAGCAC-ACTGAGGGGGACCCGACCGATCCCCGACTTGCGCATC
1771439 TTGCTCTTCT
Statistics
Matches: 4139, Mismatches: 467, Indels: 307
0.84 0.10 0.06
Matches are distributed among these distances:
824 61 0.01
826 85 0.02
827 209 0.05
828 179 0.04
830 2 0.00
832 2 0.00
835 1 0.00
836 34 0.01
838 2 0.00
840 1 0.00
843 1 0.00
846 1 0.00
847 3 0.00
849 2 0.00
852 1 0.00
853 1 0.00
856 79 0.02
857 83 0.02
858 2 0.00
859 110 0.03
861 33 0.01
862 156 0.04
863 3 0.00
864 8 0.00
865 1 0.00
866 2 0.00
867 1 0.00
868 1 0.00
869 2 0.00
870 2 0.00
871 107 0.03
872 62 0.01
873 10 0.00
874 356 0.09
875 50 0.01
876 527 0.13
877 4 0.00
879 2 0.00
880 219 0.05
881 67 0.02
882 8 0.00
884 58 0.01
885 115 0.03
886 4 0.00
887 2 0.00
888 1 0.00
890 1 0.00
892 7 0.00
894 1 0.00
896 4 0.00
897 111 0.03
898 9 0.00
899 173 0.04
900 4 0.00
901 25 0.01
902 1069 0.26
903 42 0.01
904 33 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTC
GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTG
GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGA
TGGCAGCACACTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTG
AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAGATAAG
TTCATCTAGTCTAAGATCGGACCAGACCGAGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGC
TGGTGCCGCATTTTTTTTCACCCGGGGCACCATCACGGAGCATCGTCAAGAACCTGACCGACGGC
ATTGGGGTTCGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGA
Found at i:1768945 original size:26 final size:26
Alignment explanation
Indices: 1768909--1768961 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1768899 GTTGACTTAG
1768909 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1768935 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1768961 G
1 G
1768962 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1770779 original size:11 final size:11
Alignment explanation
Indices: 1770763--1770787 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1770753 CTTGGGGAAC
1770763 CATCGTCGGAG
1 CATCGTCGGAG
1770774 CATCGTCGGAG
1 CATCGTCGGAG
1770785 CAT
1 CAT
1770788 GCCGAGGGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.28, G:0.32, T:0.20
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:1776106 original size:871 final size:868
Alignment explanation
Indices: 1772850--1781751 Score: 10485
Period size: 874 Copynumber: 10.2 Consensus size: 868
1772840 TGTGACACAT
** * * * * * *
1772850 GGCTTGCGCATCCCGCCTCTCTAACCGGCATAGTGCCCACTCGTGCCCGCTCGTTTCATCGATTG
1 GGCTTGCGCATCCCGCCTCTCTGGCCCGCGTAGTGCCCGC-C-CGCCCGCTCGTTTCGTCGGTTG
* * * ** * *
1772915 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGCTGTGGAAGCAAGA
64 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACTGAACCGAGGGTTGCAGCAGCAGGA
* *
1772980 TCAGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACT
128 TCAGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCT
* ** * *
1773045 AAATGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATC
193 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * **
1773110 GCACCGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCT-GTGCCATAATTTTTT
258 GGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-GCATTTTTT
* * *
1773174 TTGCCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
322 TCGCCCGGGGCACCATCG-CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACG
* *
1773239 ATT-GAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGGCCCTTATATT
386 ATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
*
1773303 AGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAG
451 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAG
*
1773368 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATC
516 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
1773433 CTGTACACATCGAGTTTTTAGTTGAATTTTTTTGTGCATG-C--C--AAATACAAGGATCGCGTC
581 CTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
1773493 TACCAAGTTTGGGGCCAAAACTCCATCTAAAAAAATTTTAAAAAAATCTTGAACCGTAAAAAGTT
646 TACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTT
*
1773558 TCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
711 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
* * *
1773623 ACCATTGTATGAATTTACAAGTCATAAAAAAGGCATTGGCATGGCAAAAATATGAAGATGTGCCT
776 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
*
1773688 AAACCTACCTACCACCCTATCGATCCAC
841 AAACCCACCTACCACCCTATCGATCCAC
* * * * *
1773716 GGCTTGTGCATCTCGCCTCCCTGG-CCGACGTAGTGCCCGCCTGCCCGCCCACTCGTTTTGTCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCCG-CGTAGTG--C-CC-GCCCGCCCGCTCGTTTCGTCGG
* * * * * **
1773780 TTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGA-TCAGATCGAGGGTTGTGGCAGC
61 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGACTGA-ACCGAGGGTTGCAGCAGC
* * *
1773844 AGGATTCA-TAGCACGCTGAGGGGGACCCGGCCGATCCCC-AGCTTGTGCATCCTGCCCCTCTGG
124 AGGA-TCAGCAGCACGCTGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCTGCCCCTCTGG
* * * *
1773907 CCGACTGAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCT
187 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
1773972 AAGATTGGACCAGATCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAT
252 AAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* *
1774037 TTTGTTTCGCCTGGGG---CA---C----CATCGTCGGAGAACTTGACCGACGGCATTGGGGTTC
317 TTT-TTTCGCCCGGGGCACCATCGCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTC
* *
1774092 CGACGATT-GGGGGGCCGAAGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCT
381 CGACGATTGGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
1774156 TATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
445 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGAT
* ** * *
1774221 TTTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGAAATATTTTTTTCAAATGGTCA
509 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
1774286 CAAAATCCTATACACTACGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGA
574 CAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* *** * * *
1774351 TCACGTCTACCATGTTTGGGATAAAAACTCCTTCTGAAAATA-TTTAAAAAAATCTCAAACAGTA
639 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTA
*
1774415 AAAAGTTTCAAAAATCGTGAAAAAT-GAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGG
704 AAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
1774479 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
768 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
1774544 ATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
833 ATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
*
1774580 GGCTTGCGCATCCCACCTCTC-GG-CCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCCG-CGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * *
1774643 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCA
61 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACTGAACCGAGGGTTGCAGCAGCA
* * **
1774708 GGATCGGCAACACGCTGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCG
125 GGATCAGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCG
** * ** * **
1774773 ATTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACCGACCTCATTCCCAGTCTAAG
190 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
1774838 ATCGGACC-GAACTGAGGGTTACGAGTGCACATGCTAGGCTCGGGCATGTGCTGGTGCTGTATTT
255 ATCGGACCAG-ACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TT
* * * *
1774902 TTTTTCGCCCAGGGCACCATCGCCGGAGCGTCG-CTGGAGAACCTGATCGACGGCATTGAGGTTC
318 TTTTTCGCCCGGGGCACCATCG-CGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTC
* *
1774966 CGACGATTGGGGGGGGCCGGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTACTTGACCC
381 CGACGATT-GGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* *
1775031 TTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAAAGCATTTGAGA
444 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGA
* ** * *
1775096 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGGTACTTTTTTCAAAAGCTC
508 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
*
1775161 ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGG
573 ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * *
1775226 ATGACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTGAAAACAATCTCGTACCGT
638 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGT
* *
1775291 AAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
703 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
*
1775356 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATACGAAG
768 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
* * * *
1775421 ATGTGCCAAAACCCACCTACGACCTTATCGATCCAT
833 ATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * ** * *
1775457 AGCTTGCGCATCCTGCCTCTCAGGCTTGCGTAGTGCCTGCCCGCCCGCTCGTTTCGTCAGTTGGC
1 GGCTTGCGCATCCCGCCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
1775522 TTAGCCAGACGGAGTTCATTCCCTGTCTAGGAATAGACTGAACCAAGGGTGGCAGCAGCAGGATC
66 TTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATAGACTGAACCGAGGGTTGCAGCAGCAGGATC
* * * ** *
1775587 AGCAGCACACTGAGGGGGACCCGATCGATCCCCGATTTTAGCATCCTACCCCTCTGGCCGGCTGA
130 AGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGA
* * * *
1775652 GCGCCCGAACGCTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCCTTCCAAGTCTAAGATCGG
195 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * * *
1775717 ACCAGACTGATGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCT-GTGGTCGCATTGTTTTC
260 ACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGT-GCCGCATTTTTTTC
** * * * * *
1775781 GTTCGGGGCACCATCGCCTGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGATCTGGCGAT
324 GCCCGGGGCACCATCG-CGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* *
1775846 TGGGGGGGCCGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTGATATTGG
388 TGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
1775911 CCCCCTATCCCTTATCAAGCCTCGAGAACTGACACCCCTGTAAAGAGCATTTGAGATTTTACAGG
453 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCT-TAAAGAGCATTTGAGATTTTACAGG
* * *
1775976 TTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGGCACTTTTTTCAAATGGTCACCAAATCC
517 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
**
1776041 TGTACACTTCGAGTTTTTAATTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
582 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * *
1776106 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCAAACCCTAAAAAGTTT
647 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTT
1776171 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG-AGGCATTAAGGG
712 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC-TTAAGGG
1776235 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
776 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
1776300 AAACCCACCTACCACCCTATCGATCCAC
841 AAACCCACCTACCACCCTATCGATCCAC
* * * * *
1776328 GGTTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCACCCGCCCGCCGCCTCGTTTCGTCGTT
1 GGCTTGCGCATCCCGCCTCTCTGGCCCGCGTAGTGCCCGCCCG--C-CCG-CTCGTTTCGTCGGT
* * * * * * * *
1776393 TGGCTTAGGCATACGGAGTTGATTCCCTGTCTAAGATTAGACCGGATCGAGGGTTACAGTAGTAG
62 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGACTGAACCGAGGGTTGCAGCAGCAG
* * * * * * **
1776458 GATC-GACAGCATGTTGAGGGGGACCCGGCCGATCCTCGGCTTGCGTATCCTGCCCCTCCAGCCG
126 GATCAG-CAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCG
*
1776522 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
190 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---
* *
1776587 CATATGGAGTTCATTCTCAGCCTAAGATCAGATCGGACCGAGGGTTGCAGGTGCACATGCTGGGC
250 C-TA---AG---A---TC-G-----GA-C----CAGACCGAGGGTTGCGGGTGCACATGCTGGGC
* *
1776652 TAGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCAT--C---G---CG--GGAGAA
294 TCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCCGGGGCACCATCGCGGAGCATCGTCGGAGAA
* ** ** * *
1776707 CCTGACCGACGGCAATGGGGTTCCGGTGATT-GGGGGG-TAGGGGGTGTGCGCACCTGATGTGAG
358 CCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * * *
1776770 ATGGGTGCTGGTACTTGGCCCTATTTATTGGCCCCCTATCCCTAATCAATCCTCAAGAACTCACA
423 ATGGGTGCTGGTACTTGGCCCT-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
1776835 CCCACTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATG
487 CCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
1776900 GGGACACTTCTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTCT-GCTGAATTTTTTTG
551 GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTT-TAGCTGAATTTTTTTG
* * * *
1776964 TGCATGCCAGCAAAAATATAAGGATCACGGCTACCAA-TTTGGGGCCAAAACTCCTTCAGAAAAA
615 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* *
1777028 ATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
680 ATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
1777093 TGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
745 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
1777158 ATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
810 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
1777217 GGCTTGTGCATCCCTCCTCTCTGGCCAGGGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCAGT
1 GGCTTGCGCATCCCGCCTCTCTGGCCCGCGTAGTG--C-C-CGCCCGCCCGCTCGTTTCGTCGGT
* * * * * * * *
1777282 TGGCTTAGGCATATGAAGTTCATTCCCAATCTAAGATCGGAC-CAGACTGAGGGTTGCAGTAGTA
62 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACTGA-ACCGAGGGTTGCAGCAGCA
* * * ** * *
1777346 GGATCGGCAGCACGCAT-AGGGGGACCCGACCGATGCCCGACTTCCGCATCCCACCCCACTAGCC
125 GGATCAGCAGCACGC-TGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCC
* * * *
1777410 GGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGCCATACGGAGTTCATTTCCAGTCTAA
189 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
1777475 GCATACAGAGTTCATTCTTAGTCTAAGATAGGACCGAACCAAGGGTTGCGGGTGCATATGCTAGG
254 G-AT-C-G-G---A--C-----C------A-GACCG-----AGGGTTGCGGGTGCACATGCTGGG
* * * * * ***
1777540 CTTGGGCATGTGCTGGTGCCGCATTTTGTTTTTGCTCAGGCCACCATCGCCGGAGCATTACCGGA
293 CTCGGGCATGTGCTGGTGCCGCA-TTT-TTTTCGCCCGGGGCACCATCG-CGGAGCATCGTCGGA
* * * *
1777605 GAACCTAACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGGTGTGTGCACACATGAT
355 GAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGC-CGGGGG-GTGTGCGCACATGAT
* *
1777670 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACCAGAACT
418 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
1777735 CACACCCTCTTAAAGAGCGTGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
483 CACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
1777800 AATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACATCGACTTTTTAGCTGAATTTCT
547 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
** *
1777865 TTGTGCATGCCAATGAAAATACAAGGATCACGTCTACCAAGTTTAGGGG-CAAAACTCCTTCTAA
612 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCTGA
* * *
1777929 AAAAAGTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTT
676 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
1777994 GTCTTGCCATGAAACTTCACATGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
741 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * ** *
1778059 TGGCATTGGCATGCCAGAAATATGAAGATGTGCCTAAACCCGCAAACCACCGTATCGATCCAC
806 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ** * * *
1778122 GACTTGTACATCTCGCCTCTCTGGCGCGCGTAGTGCCCGCCCGTCCGCTCGCTCGTTTCATCGGT
1 GGCTTGCGCATCCCGCCTCTCTGGCCCGCGTAGTGCCCGCCCG--C-C-CGCTCGTTTCGTCGGT
* * * * * * *
1778187 TGGCTTAGGCATACAGAGTTCATTCCCAGTCCAAGATCGAACTGGACTGAGGGTTGTAGCAGTAG
62 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAG-ACTGAACCGAGGGTTGCAGCAGCAG
* * * * * * *
1778252 GATC-GACAGCATGCAGAGGGGGACCCGGCCGATCCCTGGCTT-CGCATCCTGCCCATCTGGTCG
126 GATCAG-CAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCG
1778315 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
190 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * ** *
1778380 ATCCGACCAGACCGAGGGTTATGGGTTCACATGCTAGGCTCAAGCATGTGCTAGTGCCGCATTTT
255 ATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * * *
1778445 TTTCGCTCGGGACACCATCGCTGGAGAATCGTCGGAGAACCTGACCGACGGCGTTGGGGTTCCGA
320 TTTCGCCCGGGGCACCATCGC-GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
*
1778510 CGATTGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
384 CGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
1778575 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATATGAGATTTTA
449 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
* * * *
1778640 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTAAAATGGGGACACTTTTTTCAAGTGGCCACAAA
513 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
1778705 ATCCTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAA-AAATAATACAAGGATCA
578 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCA
* * *
1778769 TGTCTACCAAGTTTGGGGGCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTTGAACCGTAAAA
642 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAA
*
1778834 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
707 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
*
1778899 AGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
772 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGT
* *
1778964 GCCTAAACCCACCTACCACCGTATCAATCCAC
837 GCCTAAACCCACCTACCACCCTATCGATCCAC
* *
1778996 GGCTTGCGCATCCCGCCTTTCTGGCCGGCGTAGCGTGGCCACGCCTGTCCGCCCGCCTC-TTATC
1 GGCTTGCGCATCCCGCCTCTCTGGCCCGCGTA--GT-GCC-CG-C---CCGCCCG-CTCGTT-TC
* * *
1779060 AG--GGTGTGGCTTA-GCGTACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTG-
56 -GTCGGT-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAG-ACTGAACCGAGGGTTGC
* * * * * *
1779121 TGCAGAAGGAT-GGCTAGCA--AT-AGTGGGGA-CCGATCTGATCCCCGGCTTG-GCATCCTG-C
118 AGCAGCAGGATCAGC-AGCACGCTGAG-GGGGACCCGA-CCGATCCCCGACTTGCGCATCCTGCC
* * *
1779179 CCTCTGG-CGGCTGAGTGCCCG-ACGCTC-ATTC-TGTGGTTGTTAGCATACGAGTTCATTCCCA
180 CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG-GGTTG--A-CTTA-G-G--CA-T---A
*
1779240 TTCTAAGGAGTGTCATTCCCAGT-TAAGATCGAACC-GACC-AGGGTTGC-GGTGCACATGCT-G
233 --C---GGAGT-TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGG
* ** * * **
1779300 GCT-GGGCATGTGCTAGTGCCATATTTTTTTTCGCTCGGGGCATCATCGCCGGAGCATCACCGGA
292 GCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTCGCCCGGGGCACCATCG-CGGAGCATCGTCGGA
* * * * * * * *
1779364 GAACCTGACCGGCGACGTTGGGGTTCCGGCGATTGAAGGGGGTCGAGGGGTGTGCGCACATGTTG
355 GAACCTGACCGACGGCATTGGGGTTCCGACGATTG-GGGGGGCCGGGGGGTGTGCGCACATGATG
*
1779429 TGC-ATTGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
419 TGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * * *
1779493 CACACCCTCTTAAAGAGCATATGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTTTAA
483 CACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
1779558 AATGGGGACACTTTTTTCAAGTGGCCACAAAATCCTGTACACTTCGATTTTTTGGCTGAATTTTT
547 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * ** *
1779623 TTGTGCAAGCCAACAATAATACACGGATCA-ATCTACCAAGTTTGGGGGAAAAAATCCTTCTGAA
612 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
*
1779687 AAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAGTCG
677 AAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
1779752 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
742 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
1779817 GGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCATATCGATCCA-
807 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-TATCGATCCAC
* ** * * * * *
1779878 GGCTTGCTCATCTTGCCTC-CTGGCCAGCGTAGTGCCC-CCTGCCGCCGCTTCATTTCCTCAGTT
1 GGCTTGCGCATCCCGCCTCTCTGGCCCGCGTAGTGCCCGCCCG-C-CCGC-TCGTTTCGTCGGTT
* * * * *** * *
1779941 GGCTTA-G-ATACAGAGTTCATTCCCAGTCTAAGATTGA-TCAA--AACTTTTG-TGCAGTAGGA
63 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGACTGAACCGAGGGTTGCAGCAGCAGGA
*** * * * * ** *
1780000 TCGATTTGCACGCAGAAGGCGGA-CCG-TCGAT-CCCGACTTGCGCATTCTTACCCTCTGG-CGA
128 TC-AGCAGCACGCTG-AGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGG
*
1780061 CTGAGTGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGT-TAAGA
191 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
1780124 TCTGA-CATGGACCGACTGGTT-AGGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCA-T
256 TCGGACCA--GACCGA-GGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* ** * *
1780186 TTTTTCG-CCTGGGCACCATCATTGTAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC
318 TTTTTCGCCCGGGGCACCATC-GCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCC
*
1780250 -AGCGATT-GGGGGG-CGGGTGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCCC
382 GA-CGATTGGGGGGGCCGGG-G-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * * *
1780312 TTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTTAAACCCCCTTAAAGAGCATTTGAGA
444 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGA
* *
1780377 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTAAAATGGGGACACTTTTTTCAAATGGTC
508 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
1780442 ACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATAGAAGG
573 ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * *
1780507 ATCACGTATACCAAGTTTGGGGGCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCAT
638 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGT
* * *
1780572 AAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGACGTCTTGCCATGAAACTTGACATGAAGG
703 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGG
* *
1780637 CTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAG
768 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAG
* * * *
1780702 ATGTGCCTAAACCAACCTACCACCGTATCAATCCAT
833 ATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** * * * *
1780738 GACTTGTGCATCCCGCCTCTCTGGCCTTCATAGTGCCCGCCCGTCCGCCCACTCATTTTGTCGGT
1 GGCTTGCGCATCCCGCCTCTCTGGCCCGCGTAGTGCCCG--C--CCGCCCGCTCGTTTCGTCGGT
* * * * * * *
1780803 TGGCTTAAGCATACGAAGTTCATTCCCAGTGTAAGATTGAAC-CAGACCGAGGGTTCCGGCAGCA
62 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAG-ACTGA-ACCGAGGGTTGCAGCAGCA
* * * * * * * * * * * *
1780867 GGATCGGTAGCTCACAGAGGGGGACTCGATCGATCCCCGACTTGCGCATCTTACCCCTTTAGCCA
125 GGATCAGCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCG
*
1780932 GCTGAGCGCCCAG-ACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAGTCTAA
190 GCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
1780996 GATCGGATCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAACATTTGCTGGTGCCACATTT
254 GATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * *
1781061 TTTTTGCCTGGGGCA-C-T-----ATCAT--T----G----T-----A--GCA-------T-CGA
319 TTTTCGCCCGGGGCACCATCGCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
1781094 CGATTGGGAGGGTCGGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATA
384 CGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
1781159 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAGAGAATTTGAGATTTTA
449 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTA
* * *
1781224 CAGGTTTGCTACCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAA
513 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
** * *
1781289 ATCCCATACACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
578 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* *
1781354 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAGTTTAAAAAAATCTCGAATCGTAAAAA
643 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAA
* * *
1781419 GTTTTAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
708 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
** ** * *
1781484 GGGACCATTGTATGAATTTACAAGCCATAAAAATTACATTTTCATGGCAGAAATATGAATATATG
773 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* *
1781549 CCTAAAGCCACCTACCTCCCTATCGATCCAC
838 CCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
1781580 GGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCAACCCGCCCGCTCGTTTTGGCGGT
1 GGCTTGCGCATCCCGCCTCTCTGGCCCGCGTAGTGCCCG----CCCGCCCGCTCGTTTCGTCGGT
* * * *
1781645 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CAGACCAAAGGTTGCGGCAGCA
62 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGACTGA-ACCGAGGGTTGCAGCAGCA
* * *
1781709 GGATC-GATAGCACGCTGAGGGGGACCCGACCAATCCCTGACTT
125 GGATCAG-CAGCACGCTGAGGGGGACCCGACCGATCCCCGACTT
1781752 TCACAGTCTA
Statistics
Matches: 6986, Mismatches: 792, Indels: 540
0.84 0.10 0.06
Matches are distributed among these distances:
841 5 0.00
842 565 0.08
843 9 0.00
844 5 0.00
850 3 0.00
852 1 0.00
855 1 0.00
856 22 0.00
857 12 0.00
858 267 0.04
859 314 0.04
860 198 0.03
861 21 0.00
862 21 0.00
863 275 0.04
864 205 0.03
865 76 0.01
866 36 0.01
867 7 0.00
868 237 0.03
869 48 0.01
870 42 0.01
871 504 0.07
872 68 0.01
873 206 0.03
874 782 0.11
875 218 0.03
876 342 0.05
877 216 0.03
878 106 0.02
879 18 0.00
880 4 0.00
881 13 0.00
882 73 0.01
883 257 0.04
884 255 0.04
885 8 0.00
886 4 0.00
887 17 0.00
888 12 0.00
889 488 0.07
890 218 0.03
891 38 0.01
892 1 0.00
893 8 0.00
895 1 0.00
896 4 0.00
897 2 0.00
899 1 0.00
900 1 0.00
901 84 0.01
902 29 0.00
903 5 0.00
904 267 0.04
905 362 0.05
906 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (868 bp):
GGCTTGCGCATCCCGCCTCTCTGGCCCGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGACTGAACCGAGGGTTGCAGCAGCAGGATCA
GCAGCACGCTGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTCGC
CCGGGGCACCATCGCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGG
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAA
AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCAC
Found at i:1776596 original size:26 final size:26
Alignment explanation
Indices: 1776560--1776612 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1776550 GTTAACTTAG
*
1776560 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
1776586 GCATATGGAGTTCATTCTCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
1776612 G
1 G
1776613 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:1777141 original size:889 final size:870
Alignment explanation
Indices: 1772850--1797642 Score: 12612
Period size: 872 Copynumber: 27.8 Consensus size: 870
1772840 TGTGACACAT
** * * * ** * *
1772850 GGCTTGCGCATCCCGCCTCTCTAACCGGCATAGTGCCCACTCGTGC-CCG-CTCGTTTCATCGAT
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCTCGTTTCGTCGGT
* ** * ** * * *
1772913 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATTGGACCGAGGGCTGTGGAAGCAA
66 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCGGA-CGAGGGTTGCAGCAGTAG
* * * * **
1772978 GATC-AGCAGCACGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG
129 GATCGA-CAGCATGCAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCTGCCCCTCCAGCCG
* * ** * *
1773042 ACTAAATGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAG-TC-TA
192 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCATA
* * *
1773105 -AG--A-TC-GC--A-C-CGGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCT-G
257 GAGTCACTCAGCAGATCAC-GACCGAGGGTTGC-GGTGCACATGCTGGGCTAGAGCATGTGCTGG
** * *
1773160 TGCCATAATTTTTTTT-GCCCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGC
320 TGCC-GCATTTTTTTTCGCCCGGGGCACCA---TC---G-A-CG-CGGAGAACCTGACCGACGGC
* * *
1773224 ATTGGGGTTCCGACGATTGAGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTAC
375 ATTGGGGTTCCGGCGATTG-GGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
1773289 TTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCAT
439 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCAT
* *
1773354 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAA
504 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAA
* *
1773419 ATGGTCACAAAATCCTGTACACATCGAGTTTTTAGTTGAATTTTTTTGTGCATG-C--C--AAAT
569 ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * * *
1773479 ACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACTCCATCTAAAAAAATTTTAAAAAAATCTTG
634 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCG
*
1773544 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACA
699 AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
* * *
1773609 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAAAGGCATTGGCATGGCAAAAAT
764 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
*
1773674 ATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCAC
829 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
1773716 GGCTTGTGCATCTCGCCTCCCTGGCCGACGTAGTGCCCGCCTGCCCGCC-CACTCGTTTTGTCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGC-CTCGTTTCGTCGG
* * * * ** *
1773780 TTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGATCAGATCGAGGGTTGTGGCAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GACCGGA-CGAGGGTTGCAGCAGTA
* * * * * **
1773845 GGATTC-ATAGCACGCTGAGGGGGACCCGGCCGATCCCCAGCTTGTGCATCCTGCCCCTCTGGCC
128 GGA-TCGACAGCATGCAGAGGGGGACCCGGCCGATCCCGA-CTTGCGCATCCTGCCCCTCCAGCC
* * * *
1773909 GACTGAGCGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAG-TC-T
191 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCAT
* * * * *
1773972 A-AG--A-T-TG--GACCA-GATCGAGGGTTGTGGGTGCACATGCTGGGCTCGAGCATGTGCTGG
256 AGAGTCACTCAGCAGATCACGACCGAGGGTTG-CGGTGCACATGCTGGGCTAGAGCATGTGCTGG
* * * * *
1774029 TGCCACATTTTGTTTCGCCTGGGGCACCATCG--TCGGAGAACTTGACCGACGGCATTGGGGTTC
320 TGCCGCATTTTTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGACCGACGGCATTGGGGTTC
* * *
1774092 CGACGATTGGGGGGCCGAAGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTT
385 CGGCGATTGGGGGG-CG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
1774157 ATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
448 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATT
* * ** * *
1774222 TTACAGGTTTGCTGCCAGTAGCCATTAAGGTGTCTGAAATGGAAATATTTTTTTCAAATGGTCAC
512 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
1774287 AAAATCCTATACACTACGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGAT
577 AAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *** * * *
1774352 CACGTCTACCATGTTTGGGATAAAAACTCCTTCTGAAAATA-TTTAAAAAAATCTCAAACAGTAA
642 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAA
*
1774416 AAAGTTTCAAAAATCGTGAAAAAT-GAAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
707 AAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGC
1774480 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGA
771 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGA
1774545 TGTGCCTAAACCCACCTACCACCCTATCGATCCAC
836 TGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
1774580 GGCTTGCGCATCCCACCTCTC-GGCCGACGTAGTGCCCGCCCGCCCGCC-CGCTCGTTTCGTCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGC-CTCGTTTCGTCGG
* * * *
1774643 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCGGA-CGAGGGTTGCAGCAGTA
* * * * * **
1774708 GGATCGGCAACACGCTGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCG
128 GGATCGACAGCATGCAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCTGCCCCTCCAGCCG
** * ** * **
1774773 ATTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATACCGACCTCATTCCCAG-TC-TA
192 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCATA
* * * * *
1774836 -AG--A-TC-G--GA-C-CGAACTGAGGGTTACGAGTGCACATGCTAGGCTCGGGCATGTGCTGG
257 GAGTCACTCAGCAGATCACG-ACCGAGGGTTGCG-GTGCACATGCTGGGCTAGAGCATGTGCTGG
* * * *
1774892 TGCTGTATTTTTTTTCGCCCAGGGCACCATCGCCGGAGCGTCGCTGGAGAACCTGATCGACGGCA
320 TGCCGCATTTTTTTTCGCCCGGGGCACCAT---C-GA----CGC-GGAGAACCTGACCGACGGCA
* * *
1774957 TTGAGGTTCCGACGATTGGGGGGGGCCGGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGT
376 TTGGGGTTCCGGCGATT--GGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * *
1775022 ACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCACACCCCCTTAAAAAG
437 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAG
* * **
1775087 CATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGGTACTTTTTT
501 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* * *
1775152 CAAAAGCTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAA
566 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
1775217 AATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTGAAAACAATC
631 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* * *
1775282 TCGTACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTC
696 TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
1775347 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
761 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* * * * *
1775412 AATACGAAGATGTGCCAAAACCCACCTACGACCTTATCGATCCAT
826 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * ** * *
1775457 AGCTTGCGCATCCTGCCTCTCAGGCTTGCGTAGTGCCTGCCCG--C-CCG-CTCGTTTCGTCAGT
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCTCGTTTCGTCGGT
* * * * * * * * * *
1775518 TGGCTTAGCCAGACGGAGTTCATTCCCTGTCTAGGAATAGACTGAACCAAGGGTGGCAGCAGCAG
66 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATTGACCGGA-CGAGGGTTGCAGCAGTAG
** * ** * ** * **
1775583 GATC-AGCAGCACACTGAGGGGGACCCGATCGATCCCCGATTTTAGCATCCTACCCCTCTGGCCG
129 GATCGA-CAGCATGCAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCTGCCCCTCCAGCCG
* * * *
1775647 GCTGAGCGCCCGAACGCTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCCTTCCAAG-TC-TA
192 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCATA
* * * * *
1775710 -AG--A-TC-G--GACCA-GACTGATGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCT-GT
257 GAGTCACTCAGCAGATCACGACCGAGGGTTGC-GGTGCACATGCTGGGCTAGAGCATGTGCTGGT
* * **
1775766 GGTCGCA-TTGTTTTCGTTCGGGGCACCATCGCCTGAGCATCGTCGGAGAACCTGACCGACGGCA
321 -GCCGCATTTTTTTTCGCCCGGGGCACCAT---C---G-A-CG-CGGAGAACCTGACCGACGGCA
* * * *
1775830 TTAGGGATCTGGCGATTGGGGGGGCCGGGGGGTGTCCGCACATGATGTGCGATGGGTGCTGGTAC
376 TTGGGGTTCCGGCGATT-GGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * *
1775895 TTGGCCCTGATATTGGCCCCCTATCCCTTATCAAGCCTCGAGAACTGACACCCCTGTAAAGAGCA
439 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCT-TAAAGAGCA
*
1775960 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGGCACTTTTTTCA
503 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
* **
1776025 AATGGTCACCAAATCCTGTACACTTCGAGTTTTTAATTGAATTTTTTTGTGCATGCCAACAAAAA
568 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
*
1776090 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCC
633 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC
* *
1776155 AAACCCTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
698 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
1776220 ATG-AGGCATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
763 ATGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
1776284 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
827 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
1776328 GGTTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCACCCGCCCGCCGCCTCGTTTCGTCGTT
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCTCGTTTCGTCGGT
* * * *
1776393 TGGCTTAGGCATACGGAGTTGATTCCCTGTCTAAGATTAGACCGGATCGAGGGTTACAGTAGTAG
66 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GACCGGA-CGAGGGTTGCAGCAGTAG
** * *
1776458 GATCGACAGCATGTTGAGGGGGACCCGGCCGATCCTCGGCTTGCGTATCCTGCCCCTCCAGCCGG
129 GATCGACAGCATGCAGAGGGGGACCCGGCCGATCC-CGACTTGCGCATCCTGCCCCTCCAGCCGG
*
1776523 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
193 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T---C
1776588 ATATGGAGTTCATTCTCAGCCTAAGATCAGATCGGACCGAGGGTTGCAGGTGCACATGCTGGGCT
254 ATA--GAG-TCA--CTCAG-C--AGATC--A-C-GACCGAGGGTTGC-GGTGCACATGCTGGGCT
* *
1776653 AGGGCATGTGCTGGTGCCGTATTTTTTTTCGCCCGGGGCACCATCG-CG-GGAGAACCTGACCGA
306 AGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGACCGA
* * ** * *
1776716 CGGCAATGGGGTTCCGGTGATTGGGGGGTAGGGGGTGTGCGCACCTGATGTGAGATGGGTGCTGG
371 CGGCATTGGGGTTCCGGCGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * * *
1776781 TACTTGGCCCTATTTATTGGCCCCCTATCCCTAATCAATCCTCAAGAACTCACACCCACTTAAAG
436 TACTTGGCCCT-TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAG
* * * *
1776846 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTCT
499 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
* *
1776911 TTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTCT-GCTGAATTTTTTTGTGCATGCCAGC
564 TTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTT-TAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
1776975 AAAAATATAAGGATCACGGCTACCAA-TTTGGGGCCAAAACTCCTTCAGAAAAAATTTTTAAAAA
628 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
*
1777039 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
693 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
1777104 TTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGT
758 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
1777169 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
823 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
1777217 GGCTTGTGCATCCCTCCTCTCTGGCCAGG-GTAGTGCCCGCTCGCCCGCC-CGCTCGTTTCGTCA
1 GGCTTGCGCATCCCGCCTCTCTGGCC-GGCGTAGTGCCCGCCCGCCCGCCGC-CTCGTTTCGTCG
* * * * * *
1777280 GTTGGCTTAGGCATATGAAGTTCATTCCCAATCTAAGATCGGACCAGACTGAGGGTTGCAGTAGT
64 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCGGAC-GAGGGTTGCAGCAGT
* * * * * ** * *
1777345 AGGATCGGCAGCACGCATAGGGGGACCCGACCGATGCCCGACTTCCGCATCCCACCCCACTAGCC
127 AGGATCGACAGCATGCAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCTGCCCCTCCAGCC
* * * *
1777410 GGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGCCATACGGAGTTCATTTCCAGTCTAA
191 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T--
* * * * *
1777475 GCATACAGAGTTCATTCTTAGTCTAAGATAGGACCGAACCAAGGGTTGCGGGTGCATATGCTAGG
253 -CAT--AGAG-TCA--CTCAG-C--AGAT--CA-CG-ACCGAGGGTTGC-GGTGCACATGCTGGG
* * * * * * *
1777540 CTTGGGCATGTGCTGGTGCCGCATTTTGTTTTTGCTCAGGCCACCATCGCCGGAGCATTACCGGA
304 CTAGAGCATGTGCTGGTGCCGCATTTT-TTTTCGCCCGGGGCACCAT---C-GA-C----GCGGA
* *
1777605 GAACCTAACCGACGGCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGGTGTGTGCACACATGAT
359 GAACCTGACCGACGGCATTGGGGTTCCGGCGATT-GGGGGGC--GGGGG-GTGTGCGCACATGAT
* *
1777670 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCACCAGAACT
420 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
1777735 CACACCCTCTTAAAGAGCGTGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
485 CACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
* * * * *
1777800 AATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACATCGACTTTTTAGCTGAATTTCT
549 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
** *
1777865 TTGTGCATGCCAATGAAAATACAAGGATCACGTCTACCAAGTTTAGGGG-CAAAACTCCTTCTAA
614 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCTTCTGA
* * *
1777929 AAAAAGTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGGGTT
678 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
1777994 GTCTTGCCATGAAACTTCACATGACGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
743 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * ** *
1778059 TGGCATTGGCATGCCAGAAATATGAAGATGTGCCTAAACCCGCAAACCACCGTATCGATCCAC
808 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* ** * * *
1778122 GACTTGTACATCTCGCCTCTCTGG-CGCGCGTAGTGCCCGCCCGTCCGCTCG-CTCGTTTCATCG
1 GGCTTGCGCATCCCGCCTCTCTGGCCG-GCGTAGTGCCCGCCCGCCCGC-CGCCTCGTTTCGTCG
* * * * *
1778185 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCCAAGATCGAACTGGACTGAGGGTTGTAGCAGT
64 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG-ACCGGAC-GAGGGTTGCAGCAGT
* * ** *
1778250 AGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCTGGCTT-CGCATCCTGCCCATCTGGTC
127 AGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCC-GACTTGCGCATCCTGCCCCTCCAGCC
1778314 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TC-T
191 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCAT
* * *
1778377 A-AG--A-TC--C-GACCA-GACCGAGGGTTATG-GGTTCACATGCTAGGCTCA-AGCATGTGCT
256 AGAGTCACTCAGCAGATCACGACCGAGGG-T-TGCGGTGCACATGCTGGGCT-AGAGCATGTGCT
* * *
1778432 AGTGCCGCA-TTTTTTTCGCTCGGGACACCATCGCTGGAGAATCGTCGGAGAACCTGACCGACGG
318 GGTGCCGCATTTTTTTTCGCCCGGGGCACCAT--C----G-A-CG-CGGAGAACCTGACCGACGG
* * *
1778496 CGTTGGGGTTCCGACGATTGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
374 CATTGGGGTTCCGGCGATT-GGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
1778561 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
437 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAG
* *
1778626 CATATGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTGTAAAATGGGGACACTTTTTT
501 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* * *
1778691 CAAGTGGCCACAAAATCCTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCATGCCAA-AAA
566 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
1778755 TAATACAAGGATCATGTCTACCAAGTTTGGGGGCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
631 -AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAAT
* *
1778820 CTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
695 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
*
1778885 CACATGAAGGCTTAAGGGACCATTGTATGAATGTACAAGCCATAAAAATGGCATTGGCATGGCAG
760 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
* *
1778950 AAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCAATCCAC
825 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
1778996 GGCTTGCGCATCCCGCCTTTCTGGCCGGCGTAGCGTGGCCACGCCTGTCCGCCCGCCTC-TTATC
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTA--GT-GCC-CGCCCGCCCG-CCGCCTCGTT-TC
* *
1779060 AG--GGTGTGGCTTA-GCGTACGGAGTTCATTCCCAGTCTAAGATTGAACTGGACCGAGGGTTG-
60 -GTCGGT-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG-ACCGGA-CGAGGGTTGC
* * * * * * *
1779121 TGCAGAAGGAT-GGCTAGCAAT--AG-TGGGGA-CCGATCTGATCCCCGGCTTG-GCATCCTG-C
121 AGCAGTAGGATCGAC-AGC-ATGCAGAGGGGGACCCG-GCCGAT-CCCGACTTGCGCATCCTGCC
* * * *
1779179 CCT-CTGGCGGCTGAGTGCCCG-ACGCTC-ATTC-TGTGGTTG--TTA-GCATAC-GAGTTCATT
182 CCTCCAGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG-GGTTGACTTAGGCATACGGAGTTCATT
* *
1779236 CCCA-TTC-TAAGGAGTGTCATTCCCAGTTAAGATCGAACCGACC-AGGGTTGCGGTGCACATGC
246 CCCAGTTCAT-A-GA--GTCA--CTCAG--CAGATC--A-CGACCGAGGGTTGCGGTGCACATGC
* * ** * * *
1779298 T-GGCT-GGGCATGTGCTAGTGCCATATTTTTTTTCGCTCGGGGCATCATCGCCGGAGCATCACC
300 TGGGCTAGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCAT---C---G-A-C-GC
* * * *
1779361 GGAGAACCTGACCGGCGACGTTGGGGTTCCGGCGATTGAAGGGGGTCGAGGGGTGTGCGCACATG
356 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATTG--GGGGG-CGGGGGGTGTGCGCACATG
* *
1779426 TTGTGC-ATTGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
418 ATGTGCGA-TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
1779490 ACTCACACCCTCTTAAAGAGCATATGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTT
482 ACTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
1779555 TAAAATGGGGACACTTTTTTCAAGTGGCCACAAAATCCTGTACACTTCGATTTTTTGGCTGAATT
546 TAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
* * * * ** *
1779620 TTTTTGTGCAAGCCAACAATAATACACGGATCA-ATCTACCAAGTTTGGGGGAAAAAATCCTTCT
611 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
*
1779684 GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAGAGAAAACGAG
676 GAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
1779749 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
741 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
1779814 AATGGCATTGGCAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCATATCGATCCA
806 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC-TATCGATCCA
1779878 -
870 C
* ** * * * * * *
1779878 GGCTTGCTCATCTTGCCTC-CTGGCCAGCGTAGTGCCC-CCTG-CCGCCGCTTCATTTCCTCAGT
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCTCGTTTCGTCGGT
* * ** *** *
1779940 TGGCTTA-G-ATACAGAGTTCATTCCCAGTCTAAGATTGATC--AAAACTTTTG-TGCAGTAGGA
66 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGACCGGACGAGGGTTGCAGCAGTAGGA
** * * * * ** * * *
1780000 TCGATTTGCACGCAGAAGGCGGA-CC-GTCGATCCCGACTTGCGCATTCTTACCCT-CTGGCGAC
131 TCGA-CAGCATGCAG-AGGGGGACCCGGCCGATCCCGACTTGCGCATCCTGCCCCTCCAGCCGGC
*
1780062 TGAGTGCCCGCACGCTCGTTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCCAGTT-A-AGA
194 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCATAGA
* * * *
1780124 -T--CT--G-ACAT--GGACCGACTGGTTAG-GGTGCACATGCTGGGCTCGAGCATGTGCTGGTG
259 GTCACTCAGCAGATCACGACCGA-GGGTT-GCGGTGCACATGCTGGGCTAGAGCATGTGCTGGTG
* *
1780180 TCGCA--TTTTTTCG-CCTGGGCACCATCATTGTAGCATCGCCGGAGAACCTGACCGACGGCATT
322 CCGCATTTTTTTTCGCCCGGGGCACCATC------G-A-CG-CGGAGAACCTGACCGACGGCATT
* *
1780242 GGGGTTCCAGCGATTGGGGGGCGGGTGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCT
378 GGGGTTCCGGCGATTGGGGGGCGGG-G-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * * *
1780307 GGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTTAAACCCCCTTAAAGAGCATT
441 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATT
*
1780372 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTAAAATGGGGACACTTTTTTCAAA
505 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
* *
1780437 TGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATA
570 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * *
1780502 GAAGGATCACGTATACCAAGTTTGGGGGCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTCGA
635 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGA
* * * *
1780567 ACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGACGTCTTGCCATGAAACTTGACAT
700 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
* *
1780632 GAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATA
765 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
* * * *
1780697 TGAAGATGTGCCTAAACCAACCTACCACCGTATCAATCCAT
830 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** * * * *
1780738 GACTTGTGCATCCCGCCTCTCTGGCCTTCATAGTGCCCGCCCGTCCGCC-CACTCATTTTGTCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGC-CTCGTTTCGTCGG
* * * * * * *
1780802 TTGGCTTAAGCATACGAAGTTCATTCCCAGTGTAAGATTGAACCAGACCGAGGGTTCCGGCAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG-ACCGGA-CGAGGGTTGCAGCAGTA
** * * ** * * **
1780867 GGATCGGTAGC-TCACAGAGGGGGACTCGATCGATCCCCGACTTGCGCATCTTACCCCTTTAGCC
128 GGATCGACAGCAT-GCAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCTGCCCCTCCAGCC
* *
1780931 AGCTGAGCGCCCAG-ACGCTCGTTTCGTGGGTTGACTTAGGCTTACGGAGTTCATTCCCAG-TC-
191 GGCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCA
* * *
1780993 TA-AG--A-TC-G--GATCA-GACCGAGGGTTGCGGGTGCACATGCTGGGCTCGAACATTTGCTG
255 TAGAGTCACTCAGCAGATCACGACCGAGGGTTGC-GGTGCACATGCTGGGCTAGAGCATGTGCTG
* * * ** * *
1781050 GTGCCACATTTTTTTT-GCCTGGGGCACTATC-A-TTGTAG---C--ATCGAC-G-A------TT
319 GTGCCGCATTTTTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGACCGACGGCATTGGGGTT
* *
1781099 --GG-GA----GGGTCGGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTA
384 CCGGCGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
1781157 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAGAGAATTTGAGATTT
449 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTT
* * * *
1781222 TACAGGTTTGCTACCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACA
513 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
** *
1781287 AAATCCCATACACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
578 AAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
1781352 ATGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAGTTTAAAAAAATCTCGAATCGTAAA
643 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAA
* * *
1781417 AAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTT
708 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTT
** ** * *
1781482 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATTACATTTTCATGGCAGAAATATGAATATA
773 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATG
* *
1781547 TGCCTAAAGCCACCTACCTCCCTATCGATCCAC
838 TGCCTAAACCCACCTACCACCCTATCGATCCAC
* ** * *
1781580 GGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCAACCCGCC-CGCTCGTTTTGGCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGC-CTCGTTTCGTCGG
* * * * * *
1781644 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAAGGTTGCGGCAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCGGA-CGAGGGTTGCAGCAGTA
* * * * * * * **
1781709 GGATCGATAGCACGCTGAGGGGGACCCGACCAATCCCTGACTTTCACAGT-CTAAGCATACGGAG
128 GGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCC-GACTTGCGCA-TCCT--GC---C--CC
* * * * * ** * * *
1781773 TTCATTCCCAGTCTAAGATCAGACCAG-AC-CGAGGGTT-GCGGG-TGCACATGCTGGGC-T-CA
184 TCCA--GCC-GGCT--GAGC-G-CCCGCACGC-TCGTTTCGTGGGTTG-AC-T--TAGGCATAC-
* * * * * * * * *
1781832 GGCATGTGTTGATGCCGTATTTTTTTTCGCTCGGGGCAC-CATCGTCGAAGCATCGCTGGAAAAC
236 GG-A---GTTCATTCC-CA-----GTTC-ATAGAGTCACTCA--G-C--AG-ATCAC--G---AC
* * * * * * *
1781896 CTGACTGGCGGCATTGGGGTTCCGACGATTGGGGGGTGGGGGTGTGCGCACATGCTTTGTGATGG
279 C-GA---G-GG--TTGCGG-TGC-AC-A-T----GCT----G-G-GC-TAGA-GC-ATGTGCT-G
* * * * **** * * * **
1781961 GTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC-CTCGAGAACTCACACCCC
319 GTGC-CGCA-TT-----TT-TTTTCG-CCCGGGGCAC-CATC-GACGC-GGAGAAC-CTGA--CC
* * * * *** *** * *** * ** * *
1782025 TTAAAGAGCATTTGAGATT-TTAC-A--GGTTTGCTGCCAGT-AGC-CATTTAAAGTGTCTGAAA
369 --GACG-GCA-TTGGGGTTCCGGCGATTGGGGGGCGGGGGGTGTGCGCACATGATGTG-C-G--A
** ** * * * ** * * * * *
1782084 TGGG-GACACTTTTTTCAAATGGTCGC-AAAATCCT-GTACACT-TCGACTTTTTAGCTAAATTC
426 TGGGTG---C--TGGT-ACTTGG-CCCTTATAT--TGGCCCCCTATC--C--CTCATC-AAA-CC
*** * * ** * ** * * * ** **
1782145 TTTTGTACATGC-CA--ACAAAAATA-CA-AGGATCATGTCTACCAAGTTTGGGGCCAAAACGCC
476 TCGAGAAC-T-CACACCCCTTAAAGAGCATTTGA-GAT-TTTA-CAGGTTTGCTGCCAGTA-GCC
* * * ** *** ** * * *
1782205 TTCTGAAAAAATTTAAAAAAAATCCCGA-ATCGTAAAAAGTTTCAAAAATTATGAAAAATAAAAA
535 AT-T---AAAGTGT--CTAAAATGGGGACA-C-T----TTTTTC---AA--ATG----GT-CACA
* ** * * * * *
1782269 ACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG-GGACCATTGTATGAATT-TACAAG
578 A-AA-TC--C-TG---T-ACACTT--C--G-AGTTTTTAGCTGA--ATT-T-T--TTTGTGCATG
* * * * * * * * ** *
1782332 CC-ATAAAAATGGCATTGG--CACG-GTA-AAAATATGGAGATGTGCCTAAAC-CCACCT-ACTA
623 CCAACAAAAAT-ACA-AGGATCACGTCTACCAAGT-TTG-G--G-GCCAAAACTCCTTCTGA-AA
*** ** ** * ** * **** *** * **
1782390 CCCTATCGATCCACAGCCTGCGCATCC--AACCTCTTTGGCCGGCGTAGTGCCCGCCCTCTCGCC
680 AAAT-TTTA-AAAAAATCT-CG-AACCGTAAAAAGTTT---C--AAAAAT---CG-----T-GAA
*** *** * * * * * * * **
1782453 CGCTCATTTCATCG-GTTGGCTTAGGCAT-ACGAAGTTCATCCCCAGTCTAAGATCAGAAGGGAT
727 AAAT-A-GAAAACGAGTCGTCTT-GCCATGA--AACTTCA----CA-T-GAAG-GCTTAAGGGA-
* ** ** ** * ******** * * * ** * ****
1782516 CGAGGGT-TCCGGGTGCACATGCCGGGCTCGGGCGCGTCTGG--TGTCACATTTTTTTTCACTCG
779 CCATTGTAT--GAATTTACAAGCCATAAAAATG-GCAT-TGGCATGGCAGAAATATGAAGA-T-G
* * ** ** * * * *** *
1782578 -GCC-ACCATCGTCGAAGCATCGTCGGAGAACCTGACTGGC
838 TGCCTA-AACCCACCTACCACCCT-ATCGATCC--A----C
* ** * * ** * ** *** **
1782617 GGCATTGGGGTTCCGGCGAT-TGGGGGGGCTGGGGAGGTGTGCAAATGATGTGCGATGGGTGCTG
1 GGC-TTGCGCATCCCGC-CTCT-------CT---G-GCCG-GC--GT-A-GTGC-CCGCCCGCCC
* ** * * ** ** * * * * * * * *
1782681 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCA-ACAAACCTCGAG--AACTCACACCTCTTAA
47 G--C--CG-CCTCGT-TTCG-TCGGT-TGGCTTAGGCATA-C-GGAGTTCATTCCCA-GTC-T--
**** * * * * * * * * *
1782743 AGAGCATTTGAGATTTTA-TAGGTTTACTGCCAGTAGCCAT-TAAAG--TGTCTGAAATGGGGA-
98 A-AG-A-TT--GACCGGACGAGGGTTGCAG-CAGTAG-GATCGACAGCATG-C--AGAGGGGGAC
* *** ** * * * * *** ** * ** * **** * * *
1782803 -C-ACTTTTTTCAAATGGTCACAAAAT-CCTGTACAGTTTGAGTTTTTAG-CTG-A-ACT-TTTT
153 CCGGCCGATCCCGACTTG-CGCATCCTGCCCCTCCAG-CCG-GCTGAGCGCCCGCACGCTCGTTT
** * * ** *** * * * *
1782861 TAT-GCTTTACCACAAAAATACAAGGA--TCACGTCTACCAAGTTTGGGCCTAAAACTC-CTTCT
215 CGTGGGTTGA-CTTAGGCATAC--GGAGTTCA--T-T-CCCAG-TT---CAT-AGAGTCAC-TC-
** * * ** *** *** * * * ** ** * *
1782922 GAAAAAATTAAAAAAAATCTCGAACCATAAAAAGTTTCAAAAAT-CGTGAAAAACT-GAAAACGA
266 -AGCAGA-T---CACGA-C-CG-AGGGT--TGCGGTGC--ACATGC-TG---GGCTAGAGCATGT
* * ***** * ** * * * ** *
1782985 G-TCGT-CTTGTCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGACATTACAAGCCAT
315 GCTGGTGC-CG-CATTTTTTTTCGCCCG--GG-----G-CACCATCG-ACG-C-GGAGAA-CC-T
* **** * ** ** ** * ** *** * ** *
1783048 AAAATTC-GCATT--GG--CACGGCAGAACTATGAAGATGTGCCTAAACCCACCTACCACCCTAT
365 GACCGACGGCATTGGGGTTC-CGGC-G-ATTGGGGGGCGGGGGGTGTGCGCA-C-ATGA---TGT
** * ** * * * ** * *
1783108 -CGATCCACG-GCTTGCGCA-TCCCGCCTCTCTGGCTGGAGTAGTGCCCGCTCGCCCGCCCGCTC
422 GCGAT--GGGTGC-TG-GTACT-TGGCC-CT-T--AT--A-TTG-GCCCCCT-ATCC-CTC-ATC
*** * ** * * *** * **** * * ** *** *
1783170 GTTTCGTCG-GTTGGCTTAGGATACGGATTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGT
471 -AAACCTCGAG--AAC-T--CACAC-CCCTTAAAGAGCA-TTTGAGATTTTA-CAG---GTTTGC
* * ** ** * *** * ** * ** **
1783234 TG-CAGTAGCAGGATTGGAAG-CAC-ATTGAGGGGGACACGATCGATCCCCA-GCTTGC-TCATC
524 TGCCAGTAGC--CATT-AAAGTGTCTA-AAATGGGGACAC--TTTTTTCAAATGGTCACAAAATC
* * **** ** * ** * ** ***
1783294 CTGCCT-CTCTGGTCG-GCTGAGCGCTCGCACACTCGTTTCGTGGTTGAC-TTAGGCATAC--GG
583 CTG--TACACT--TCGAGTTTTTAGCT-G-A-A-TTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * * **** * *** * *** * * ***
1783354 AGTTCA-TTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGAGTGCACATGCTGGGCTCAGGC
640 A--TCACGT-CTA--CCAAGTTTGG---GG-CC-AAAACTCCTTCTG-AAAAAAT---TTTAAAA
** * ** ***** *** * * ** * * **
1783418 ATGTGCTGGTGCCGTATTTTTTTTC---GCCCGGGGCACCATCG---CCGGAGCATCGTCGGAGA
691 AAAT-CTCGAACCGTAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAAC-GAG--TCGTC-TTG-
* ** * ** * *** ** * *
1783477 ACC-TG--ACTGGTGACAT-TTGGGTTCCGGCGATCGGGAGGGTTGGGGGGGTGTGC--GCACAT
749 -CCATGAAACT--TCACATGAAGGCTTAAGG-GA-C--CA---TTGTATGAATTTACAAGC-CAT
* ** * * * * ** *** *** *
1783536 -GATGTGTG-A-TGG-GT-GCTGGTACT-TGACCAT-TAAATTGGCCC-CCT---ATCCT-TC-A
803 AAAAATG-GCATTGGCATGGC-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
*
1783588 TCAAAC
866 TC-CAC
** * * * ** ** * ** * ** *** **
1783594 CTCTAGAACTCA-CACCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCT-
1 GGCTTG--CGCATC-CCGCCTCT-CTG-GC--CGGCG-TAGTGCCCGCCCGC--CC-GCCGCCTC
** *** ** * ** * * **
1783656 -TTAAAGT--GTCTGAAAT-GG-GGAC--ACTT-ATTCAAATGGTCACAAAATCCTGTACAC-TT
55 GTT-TCGTCGGT-TGGCTTAGGCATACGGAGTTCATTCCCA--GTC-TAAGAT--TG-AC-CGGA
* ** * * ***** * ***** ** *
1783712 CGA-GTTTTTAGC--TAAAGTTTTTTTGCATGCCAACAAAAATACAAGGATCACG-TCTACCAAG
111 CGAGGGTTGCAGCAGT-AGGATCGACAGCATG-C-AGAGGGGGACCCGG--C-CGATC--CCGA-
* * ** * ** ******** *** * **
1783773 TTTGGGGCCAAAACT-CCTTCTGAAAAAATAAAAAAAAAATCCC-CAAC-CGTAAAAAGTTTTAA
167 CTT-GCG-C-ATCCTGCC-CCT----CCAGCCGGCTGAGCGCCCGC-ACGC-T----CG-TTTCG
**** ** * * * * * * *
1783835 AAATTATGAAAAATA-GAAAAC-GAGTCGTC-TTGCCA--TGA-A-ACTTCA--CATGAAGGCTT
217 TGGGT-TG--ACTTAGGCATACGGAGT--TCATTCCCAGTTCATAGA-GTCACTCA-GCA-G-AT
* * ** *** ** * ** * *
1783891 AAGGACC-ATTGTAT-AAATTTACAAGC----CATA-AAAATG-GCATTGGCAATGCAGAAATAT
273 CACGACCGAGGGT-TGCGGTGCACATGCTGGGC-TAGAGCATGTGC--TGG---TGCCG-CAT-T
*** * **** * * ***** * * * * **
1783948 GAAGATAT-G-CCTAAAC-CCACCTAC-CACCCTATC-GATCTACGGC-TTGCGCATCC--CG-T
329 --TTTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGAT
**** * * * ** * * * *
1784004 CTCTCTGGC-CGGCGTAGTGC-C-CATCCGCCTGCCCGCTCGTTTCATCGG---TTGG--CTTAG
392 -TGGGGGGCGGGGGGT-GTGCGCACAT--G-ATGTGCGATGGGTGC-T-GGTACTTGGCCCTTA-
* ***** * * ** * * *** * *
1784061 GCATAT-GAAGTTTATTCC-CAGTCTAAGATCG-G-ACTGGACGCAGGGTTGCACCAGCAGGATT
449 -TAT-TGGCCCCCTATCCCTCA-TCAAACCTCGAGAACT-CACAC-CCCTT--A-AAG-AGCATT
* ** * * *** * * ** *
1784122 GGCAGCACGTTGCGGGGGACCCGACTGATCCCCGGCTTGCACATCCTGCCCCTCTAGTCGGCT-A
505 TG-AG-ATTTTAC--AGG-TTTG-CTG----CCAG-TAGC-CA---T-----TAAAGT-GTCTAA
** * * * ** * * ** ** * * * *
1784186 AGCGCCCGTACGCTCGTTTC--GTGGGTTGACTTAGGCATACGGAGTTCA-TTCCCAG-TCTAAG
549 AATG--GGGACACTTTTTTCAAAT-GG-TCAC--A-AAAT-C-CTGTACACTT-CGAGTTTTTAG
* ***** * ** * * *** **
1784247 ATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTAGGCT-C-AGGCATGTGCTGGTGCTA-CAT
604 --CTGA----A--TTTTTTTGTGCATGC-CA-ACAAAAATACAAGG-A--T-CACGT-CTACCA-
** *** *** * * ** ** * * * * * * * ****
1784309 TTTTTTTTCGCCAGGGGCACCATC-GCCGGAGCATTATCAGAGAACCT-GACCGACGGCATTGGG
653 -AGTTTGGGGCCA-AAACTCCTTCTG--AAAAAATTTTAAAAAAATCTCGA---ACCGTA-AAAA
* ** * ** * * *** * *
1784372 GTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGTGTTGGTACTTGGC
710 GTTTC-AAAAAT--------C-------GT--G-A-AAAAT-AG-AAAACGAG-TCGT-CTT-GC
* * * * * *** * ** * * * * *
1784437 CCTCATA-TTGGCCCCCT-ATCCCTCATCGAACC-TTG-A-GAACTCA-AACCCCCTTAAAGAGC
750 CATGAAACTT---CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA--GCCATAAA-A--
* * *** * * *** ***
1784496 ATTTGAG-ATTTTATAGGTTTACTGCCAGTAGCCATTAA-A-GTGTCTGAAATGGGGACACTTTT
807 A--TG-GCA---T-T-GG--CA-TGGCAG-AAATATGAAGATGTGCCT-AAA--CCCAC-CTACC
** ** * *
1784558 TTCAAATTG-TCACAAA
856 ACCCTATCGATC-C-AC
** * ** ** ** * * * * ** * **** * ** * ***** * **
1784574 ATCCTGTACA-CTTTGAGTTTTTAG-CTGAAT-TTTTTTG--TGCATGCCAACAAAAATAC-AAG
1 GGCTTGCGCATC-CCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCC-GCCTCGTTTCGTCG
* * * * ** ** ** * * * **** ** **
1784633 GATGACGTCTACGAAGTTTGG-GGCCAAAACGCC-TTCTGAAAAAATTTTAAAAAAATCTCGTAT
64 GTTGGC-T-TAGGCA-TACGGAGTTC-ATTC-CCAGTCT---AAGA--TTGACCGGA-CGAGGGT
* * * ** *** ** * * * * * *** * ** * * **
1784696 AGTA-AAAAATTTTAAAAATCGTGAAAAATAGAAAAC-G-AG-T--CGTCTTGC-CA---TGAAA
118 TGCAGCAGTAGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCGACTTGCGCATCCTG-CC
* * ** * *** * * * *
1784751 CTTGACATGAAGGCTCAAG-G---G-AC-CAT--TTTC-TAAATTCAC-AAGCCATAAAAATGGC
182 CCT-CCA-GCCGGCT-GAGCGCCCGCACGC-TCGTTTCGTGGGTTGACTTAGGCAT----ACGG-
** * * * * *
1784806 A-TTGGCA-TGGCAGAAAT-ATGAGGATGTCCCTAAACCCACCTACCACCCTATCGATCC-ACGG
238 AGTT--CATTCCCAG--TTCAT-A-GA-GT--C---ACTCAGC-A-GA-TC-A-CGA-CCGA-GG
* * * * * * * **
1784867 CTTGCGCATCCCGCCTCTATGCTCAGGGCGAG-GGA-GTGCCCGCCAACATAAG-CGCCA--AGT
284 GTTGCG-GT---G-CAC-ATGCT--GGGCTAGAGCATGTG-CTG-----GT--GCCG-CATTTTT
* * ** * * * * * **
1784927 ATTCG-CAGTCGC-CCATC-ACCCTCGTGTGCA-CTGGCTTGACGGCCCAATCGTGAGTTCCATT
332 TTTCGCCCGGGGCACCATCGA--CGCG-GAGAACCTGAC-CGACGG--C-AT--TG-G---GGTT
* ** ** * * * *
1784988 CCCAGTCAAAGATTTGCACGATCGATCGAGGT-TGCGGTGCACATGCTGGGCTCAGCAT--GTGC
384 -CC-GGC---GA-TTG-GGGGGCG--GGGGGTGTGC---GCACATGATGTG--C-G-ATGGGTGC
* * **** * * * * *
1785050 TGGTGC-CGATTTTTTTTCATCCGGCACCATCCGAT-CGTGC-TGAGAACCT---G-AC-CGACA
433 TGGTACTTG-GCCCTTAT-AT-TGGC-CC--CCTATCCCT-CATCA-AACCTCGAGAACTC-ACA
*** * ** * * ** ** * *
1785107 CTGGGGTTTCAATGATCGACAATGGGGGGGTGTGCACCAGATGTGCGATGGTGCTGGTACTTGGC
489 C---CCCTT-AAAGA--G-C-AT-TTGAGAT-TTTA-CAG--GT----T--TGCTGCCA-GTAGC
* * * * ** * ****
1785172 CCTTATATTGCCCCTATCCTCATCAACCTAAGAACTCACACCCCTT-AAAGGGCCTTGAGTTTCA
534 CATTA-A-AG----TGT-CT-A--AA-ATGGGGA--CAC-TTTTTTCAAA------TG-G--TCA
***** * *
1785236 GGTGCTGCACTTAGACATTAAAGTGTCTGAATGAACTTTTTAATGGTCTCCAACACGAAGCTGAA
576 CAAAAT-C-C-T-G----TACACT-TC-G-A-G---TTTTT-A--G-CT-------GAA--T---
*
1785301 CTTTTTTGTGCATGTCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CAAAAATCCT
610 -TTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * ** *
1785364 TCTGAAAAAATTTCAAAAAAATCCCGAATCATAAAAAGTTTTGAAAATCGAGAAAAATAGAAAAC
673 TCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAC
* * * *
1785429 GAGTCATCTCGCCATGAAACATCACATGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCAT
738 GAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
1785494 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
803 AAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
1785559 CAC
868 CAC
* * * ** * *
1785562 GGCCTGCGCATCCCGCCTATCTGGACAACGTAGTGCCCGCCCGCCCGCTC-ACTTGTTTCGTCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGC-CGCCTCGTTTCGTCGG
* * * * * * * * ** **
1785626 CTGGCTTAGGCATGCAGATTTCATTCCTAGTGTAAGATCGGACTGGACTGAGGGTTGTGGCACCA
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCGGAC-GAGGGTTGCAGCAGTA
* * * * * ** *
1785691 GGATCGGCAACATGCTGAGGGGGACCCGGTCGATTCCCGACTTGCGCATCTTGCCCCTCTGGCCT
128 GGATCGACAGCATGCAGAGGGGGACCCGGCCGA-TCCCGACTTGCGCATCCTGCCCCTCCAGCCG
* * *
1785756 GTTGAGCGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TC-TA
192 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCATA
** * *
1785819 -AG--A-TCAG-ACGA--A--ACCGAGGGTTGCAGGTGGTCATGCTGGGCTCGGGCATGTGCTGG
257 GAGTCACTCAGCA-GATCACGACCGAGGGTTGC-GGTGCACATGCTGGGCTAGAGCATGTGCTGG
* * * * **
1785875 TAG-TGTATTTTTTTTCACCCGGGGCACCATC-A-TCAAAGAACCTGACCGACGGCATTGGGGTT
320 T-GCCGCATTTTTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGACCGACGGCATTGGGGTT
* *
1785937 CCGACGATTGGGGGTGGCGAGGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGC
384 CCGGCGATT-GGGG-GGC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
1786002 CCTTATATTGACCCCCTATCCCTCATCAAACCTTGACAACTCACACCCACTTAAAGAGAATTTGA
444 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGA
* * *
1786067 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAGTGG
508 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGG
* * * ** *
1786132 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTTACGCATGCCAAAAAAAATACAA
573 TCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
1786197 GGATCACGGCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTTAAAAAATC-CTGAAC
638 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC-GAAC
* * * * * *
1786261 CGTAAAACGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGT-TAGCAATGCAACTGCACATGA
702 CGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGA
*
1786325 AAGCTTAAGGGACCATTGTAT-AATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATG
767 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATG
1786389 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
832 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
1786428 GGCCTGCGCATCCCGCCTCTCTGGCCGGCATAGTGCCCGCCCG---TCCG-CTCGTTTCGTTGGT
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCTCGTTTCGTCGGT
* * * ** * * *
1786489 TGGCTTAGGCATACGAAGTTCATTCACAGTCTAAGATCAGACTAGATTGAGGGTTGCTGTAGTAG
66 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCGGA-CGAGGGTTGCAGCAGTAG
* * * * * * **
1786554 GATC-AGCAGCACGCTA-AGGGGAAACCGGTCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCC
129 GATCGA-CAGCATGC-AGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCTGCCCCTCCAG-C
* * *
1786617 CGG-TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGACTTCATTCCCAGTCTA
190 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T-
* * * * * *
1786681 AGCATACGAAGTTCATTCCCAATCTAAGATCGGATTGGATCGAGGGTTACGGGTGCACATGTTGG
253 --CATA-G-AG-TCA--CTC-AGC--AGATC--A--CGACCGAGGGTTGC-GGTGCACATGCTGG
* * * * * *
1786746 GCTCGGGCATGTGCTGGTGCCAC-TTTTTTTTCACCCGAGGCTCCATCACCGAAGGATCGTCGGA
303 GCTAGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCAT---C----GA-CG-CGGA
** * * *
1786810 GAACCTGACCGGTGGCATTAGGGTTCTGGTGATTGGGGGGGCGGGGGGTGTGCGCACATGATGTG
359 GAACCTGACCGACGGCATTGGGGTTCCGGCGATT-GGGGGGCGGGGGGTGTGCGCACATGATGTG
** ** *
1786875 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACCCCTTAAGAACTCAA
423 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
1786940 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTTTGAAAT
488 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * * *
1787005 GGGGACACTTTTTTTGAAATGGTCACAAAATTCTGTACGCTTCGAGTTTTTAGCTGAATGTTTTT
552 GGGGACAC-TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
1787070 GTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACTCCTTCTGAAAA
616 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* *
1787135 AATTTTAAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
681 AATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
1787200 TTGACATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCTTAAAAATGG
746 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
1787265 CATTGGCATGGCTGAAATATAAAGATGTGCCTAAACCTACCTACAACCCTATCGATTCAC
811 CATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
** * * * ** * *
1787325 GGCTTGCGCATCCCGCCTCTCTGGTTGGAGTAGTGCTCGCCCGCCCGTCATCTCGTTTCATC-GA
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCTCGTTTCGTCGGT
* * * * * * * *
1787389 TGTGCTTAGGCATACGGAGGTCATTCCCAGTCTAAGATCGAACCAGACCGAAGGTTACGGTAGCA
66 TG-GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG-ACCGGA-CGAGGGTTGCAGCAGTA
* * ** * * * * ** *
1787454 AGATTGACAGCACACAGAGGGGGACCCAG-TGATCCCCGGCTTGCACATCCTGCCCCTCTGGTCG
128 GGATCGACAGCATGCAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCTGCCCCTCCAGCCG
* * * * * *
1787518 GCTGAGCTCCCGTACGCTCATTTCATGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAT
192 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--T
* * * * * *
1787583 AATATAGAGTTCATTCCCAGTCTAGGTCAAACCAGACCGAGGGTTACGGGGGCACATGCTGGGAT
253 --CATAGAG-TCA--CTCAG-C-AGATC--A-C-GACCGAGGGTTGC-GGTGCACATGCTGGGCT
* * * *
1787648 CG-GCCATGTGCTGGTGCCGCATTTAGTTTTT-GCCCGGGGCTCCATC-A-TCGGAG-----GAT
306 AGAG-CATGTGCTGGTGCCGCATTT--TTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGAC
** *** * ** *
1787704 C-ATCGG-A-----G-AAC--C---TGACCGAC--GGCAT-TG-G-----GGT-TGCGATGGGTG
368 CGA-CGGCATTGGGGTTCCGGCGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
1787746 CTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACTCCCCCTTA
432 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC-ACCCCTTA
* * *
1787811 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACT
496 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
*
1787876 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
561 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * ** *
1787941 AAAAAAATAGAAGGATCACAACTTCCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
626 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * *
1788006 AAATCTTGAAACGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCTTGCCATGAA
691 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
1788071 ACTTCACAAGAAGGCTTAAAGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCTTG
756 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
1788136 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
821 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
1788186 GGCTTGCGCATCCCGCCTCTCTGGCTGGCCTAGTGCCCGCCCGCCCGCC-CGCTCGTTTCGTCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGC-CTCGTTTCGTCGG
* * * * * *
1788250 TTGGGTTAGGCATATGGACTTCATTCCCAGTCTAAGATTGGATCGGACCGAGGGTTG-TGACAGC
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GACCGGA-CGAGGGTTGCAG-CAGT
** * * **
1788314 AGGATCGGTAGCA--CATTGAGGGGGACTCGGCCGATCCCGACTTGCGCATCCTGCCCCACTGGC
127 AGGATCGACAGCATGCA--GAGGGGGACCCGGCCGATCCCGACTTGCGCATCCTGCCCCTCCAGC
* * * * *
1788377 CGGTTGAGCGCTCGCACGCTTGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCCAG-TC-
190 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCA
* * * *
1788440 TA-AG--A-TC-G-A-A-CTA-GACCGAAGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCT
255 TAGAGTCACTCAGCAGATC-ACGACCGAGGGTTGC-GGTGCACATGCTGGGCTAGAGCATGTGCT
* * * * ** * * *
1788496 CGTGTCGTA-TTTTTTTCACCCAAGGCACCATCGTCGGAGCATCGCAGAAGTACCTGACCGACGA
318 GGTGCCGCATTTTTTTTCGCCCGGGGCACCA---TC---G-A-CGC-GGAGAACCTGACCGACGG
* * * * *
1788560 CATTGGGGCTCCGACGA-TGGGAGGGTCGGGGGGTGTGCGCACAAGATGTGAGATTGGTGCTGGT
374 CATTGGGGTTCCGGCGATTGGG-GGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*
1788624 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACTCCCTTAAAGAG
437 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCTTAAAGAG
* *
1788689 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATGGGGACACTTTTTT
501 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* * ** *
1788754 CAAAAT-GTCACAAAATCCTATACACTTGGAGTTTTTAGCTGAATTGCTTTGTGCATGCCAAAAA
566 C-AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * * *
1788818 AAATACAAGGATCATGTATACCAAGTTTGGGACCAAAACTCCTTCTGAAAAAAATTTAAAAAAAA
630 AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAAA
* ** * *
1788883 TCTCGAACGGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACT
694 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
1788948 TCACATGACA-GCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAC
759 TCACATGA-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
*
1789012 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
823 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * *
1789060 GGCTTACGCATCCCGCCTCTCTAGCCGACGTATTGCCCGCCCGCTCGCC-CACTCGTTTCGTCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGC-CTCGTTTCGTCGG
* * * * *
1789124 TTGGCTTAGGCATGCGGAGTTCATTCCCAGTCTAAGATTAGACCAGATCGAGGATTGCGGCCA-C
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GACCGGA-CGAGGGTTGCAG-CAGT
* * ** * * * * ** *
1789188 AGGATCGGCAGCACGTTGAGGGGGACCCAGCCTATCCCCAGCTTGTGCATCCT-CCACCTCTGGT
127 AGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCGA-CTTGCGCATCCTGCC-CCTCCAGC
* * *
1789252 CGGCTGAGCGCCCACACGTTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAG-TC-
190 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCA
* * * * * * *
1789315 TA-AG--A-T-TG--GA-C-CGGACTGAGTGTTGCGAGTGCACATACTGGGCTCGGGCATGTGCA
255 TAGAGTCACTCAGCAGATCAC-GACCGAGGGTTGCG-GTGCACATGCTGGGCTAGAGCATGTGCT
* ** *
1789371 GGTGCCACATTTTTTTTTTCGCATGGGGCACCATCGTTGGAGCATCACCGGAGAACCTGACCGAC
318 GGTGCCGCA--TTTTTTTTCGCCCGGGGCACCATC------G-A-C-GCGGAGAACCTGACCGAC
* * * * **
1789436 GACATTGGGGTTTCGACGATTGGGGGGCCGAGGGGTGTGCGCATGTGATGTGCGATGGGTGCTGG
372 GGCATTGGGGTTCCGGCGATTGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
1789501 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACGCCCTTAAAGA
436 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-CCCTTAAAGA
* *
1789566 GCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGCGTCTAAAATGGGGACACTTTTT
500 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* * * * * * *
1789631 TCATATCGTCACAAAATCCTATACACTTCGAGTGTTTAGCTAAATGTTTTTGTGCAAT-CCCACA
565 TCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAACA
* * *
1789695 AAAATAAAACGTTCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAA
629 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAA
* *
1789759 TCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
694 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
1789824 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGACA
759 TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCA
1789889 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
824 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** *
1789936 GGCTTGCGCATCCCGCCTCTTTGGCCGACGTAGTGCTTGCCCG--C-CCG-CTCGTTTCATCGGT
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCTCGTTTCGTCGGT
* * * * * * *
1789997 TCGCTTAGGCATATGGATTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGCGGTAGCAA
66 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GACCGGAC-GAGGGTTGCAGCAGTAG
* * * * ** * * *** *
1790062 GATTGGCAGCACGCCGAGGGGGACCCGATCGATCCTCGACTTTCGCATCCTACCCCTTTGGCCGA
129 GATCGACAGCATGCAGAGGGGGACCCGGCCGATCC-CGACTTGCGCATCCTGCCCCTCCAGCCGG
* * * * ** *
1790127 CTCAGCTCCCGCACACTCATTTTATGGGTTGACATAGGCATACGGAGTTCATTCCCAG-TC-TA-
193 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCATAG
** *
1790189 AG--A-TC-G-A-A-CTGGACCGAGGGTTGTGGGTGCACATGCTGGGCTCAG-GCATGTGCTGGT
258 AGTCACTCAGCAGATCACGACCGAGGGTTG-CGGTGCACATGCTGGGCT-AGAGCATGTGCTGGT
* * * * * * **
1790246 ACCGTATTTTTTTTCACTCGGGGTACCATCGTCGGAGCATCGTCGGAGAACCTGATCGGTGGCAT
321 GCCGCATTTTTTTTCGCCCGGGGCACCA---TC---G-A-CG-CGGAGAACCTGACCGACGGCAT
* * * *
1790311 TGGGGATCCGTCGATTGGGGGGGCCGACGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTAC
377 TGGGGTTCCGGCGATT-GGGGGG-CG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
* * * * *
1790376 TTGGCCCTTATATTGGCCCTCAATCCCTCATTAAACTTCGAGAACTCACACCCCCTTAGAGAGCA
439 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCA
* *
1790441 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCA
503 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
*
1790506 AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAA
568 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * *
1790570 TACAAGGATCACGTCTACCAAGCTTGGGGCCAAAACCCCTTCTGAAAAAATTTTTAAAAAATCCC
633 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC
* * * * * *
1790635 AAACTGTAAAAAGTTTTAAAAATCGTGAAAAATAGAGAACGAGTTGTCTTGCCATGAAACTTTAC
698 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * *
1790700 ATGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCAAAAAAATGGCATTGGCATGGCAAAAA
763 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAA
*
1790765 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAT
828 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * * *
1790808 GGCTTGCGCATCCCGGCTGTCTGCCCGACGTAATACCCGCCCGACCAC-CCG-CTCGTTTTGTAG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCG-CC-CGCCGCCTCGTTTCGTCG
* *
1790871 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACTGGACCGAGGGTTGCAGCTGC
64 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GACCGGA-CGAGGGTTGCAGCAG-
* * * * * * *
1790936 T-GGATCGGCAGCACGCTGAGGGGGACCCGACCGATCCCTAGCTTGCACATCCTG-CCCTCTAGC
126 TAGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCCGA-CTTGCGCATCCTGCCCCTCCAGC
* * * *
1790999 CGACTGAGCGCCTGCATGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAG-TC-
190 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCA
* ** * * * *
1791062 TA-AG--A-TC-G--TA-CTGGACCAAGGATTGCAAGTACACATGCTGGGCTCAG-GCATGTGCT
255 TAGAGTCACTCAGCAGATCACGACCGAGGGTTGC-GGTGCACATGCTGGGCT-AGAGCATGTGCT
* * * * *
1791118 GGTGCCGTATTTTTTTTCCCCCGGGGCACCATCG--TCGGAGAACCTGACCGGCAGCATTGGGGT
318 GGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGACCGACGGCATTGGGGT
*
1791181 TCCGACGATTGGGGGGGTCGGGGCGGGTTGTGAC-CACATGATGTGCGATGGGTGCTGGTACTTG
383 TCCGGCGATT-GGGGGG-C-GGG-GGG-TGTG-CGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
1791245 GCCCTTATATTGG-CCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCTTTT
442 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTT
* * *
1791309 GAGATTTTACACGTTTGCTACCGGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
506 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAAT
* * * * *
1791374 GGTCGCAAAATCCTGTACACTTCGAATTTTTAGTTGAATTATTTTGTGCAAGCCAACAAAAATAC
571 GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* *
1791439 AAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCTCGAA
636 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAA
* * *
1791504 CTGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTGACATG
701 CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATG
* * *
1791569 AAGGCTTAAGGGACCATTGTATGAATTTATAAGCCACAAAAATGGCATTGGCATGGCTGAAATAT
766 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATAT
* **
1791634 GAAGATGTACCTAAACCCACCTACCACCCTAT--ATATAC
831 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
1791672 GGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCTCGCCCGCCCGCC-CGCACGTTTCATCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGC-CTCGTTTCGTCGG
* * * *
1791736 TTGGCTTAGCCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGATCGAGGGTT-----A-T-
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCGGA-CGAGGGTTGCAGCAGTA
* * ** * * ** *
1791794 GG-TAG-CAGC-TCGCTGAGGGGGACCCGATCGATCCCCGACTTACGCATCCTACCCCTCTGGCA
128 GGATCGACAGCAT-GCAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCTGCCCCTCCAGCC
* * * *
1791856 GGTTGAGTGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TC-T
191 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCAT
* *
1791919 A-AG--A-T---CAGA-C-CGGACCGACGGG-TGCGGGTGCACATGCTGGGCTCGGGCATGTGCT
256 AGAGTCACTCAGCAGATCAC-GACCGA-GGGTTGC-GGTGCACATGCTGGGCTAGAGCATGTGCT
* * * *
1791974 GGTGCCGTATTTTTTTTCGCCTGGGGCACCATCGTCGGAGCGTCGCTAGAGAACCTGACCAACGA
318 GGTGCCGCATTTTTTTTCGCCCGGGGCACCA---TC-GA-CG-CG---GAGAACCTGACCGACGG
* * * * *
1792039 CATTGGGGTTCTGACGATTGGGGGGCCGGGGGGTGTGCGTACATGATTTGTGATGGGTGCTGGTA
374 CATTGGGGTTCCGGCGATTGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
1792104 CTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAAAGC
438 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGC
* *
1792169 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTCTGAAATGGGGACAC-TTTTTC
502 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTC
* * *
1792233 AAATGGTCACAAAATCCTATACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCGAACAAAA
567 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * *
1792298 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAAATTTGAAAATAATC
632 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-AAAAAATTTTAAAAAAATC
* * *
1792363 TCGAACCGTAAAAGGTTTCAAAAGTCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
696 TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* **
1792428 ACAGGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCAT-AAAATGGCATTGGCATGGCAGA
761 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* * * *
1792492 AATATGAAGATTTGCC-AAATCCCACCTACGACCTTATCGATCCTC
826 AATATGAAGATGTGCCTAAA-CCCACCTACCACCCTATCGATCCAC
*** * *
1792537 GGCTTGCGCATCCCGCCTCTCTGGGTTGCGTAGTGCCCG-CCG-CAG--G-CTCGTTTCATCGGT
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCTCGTTTCGTCGGT
* * * * ** * * * * *
1792597 TAGCTTAGCCAGACAGAGTTCATTCCCTA-TCTAAGAACAGACTGAACTGAGGGTGGTAGCAGCA
66 TGGCTTAGGCATACGGAGTTCATTCCC-AGTCTAAG-ATTGACCGGAC-GAGGGTTGCAGCAGTA
** * ** * * * **
1792661 GGATC-AGCAGCACACTGAGGGGGACCTAGCCGATCCCCGGCTTGTGCATCCTACCCCTCTGGCC
128 GGATCGA-CAGCATGCAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCTGCCCCTCCAGCC
* * * * *
1792725 GGCTGAGCGCCCGCATGCTCGTTTTGTGGGTTGACTTAGGTATATGGAGTTCCTTCCCAG-TC-T
191 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCAT
* * * * *
1792788 A-AG--A-TC-G--GA-C-CGGACCGAGGGTTGTGGGTGCAGATGCTGGGCTCGGGCAAGTGCTG
256 AGAGTCACTCAGCAGATCAC-GACCGAGGGTTG-CGGTGCACATGCTGGGCTAGAGCATGTGCTG
* * * *
1792844 GTGCCACATTATTTTTCGCCCGGGGCACCATCGTCAGAGCATCATCGGAGAACCTGATCGACGGC
319 GTGCCGCATTTTTTTTCGCCCGGGGCACCA---TC---G-A-C-GCGGAGAACCTGACCGACGGC
* * *
1792909 ATTGGGGTTCCGGTGATTCAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGAGTGCTGGTA
375 ATTGGGGTTCCGGCGATT--GGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
1792974 CTTGGCCCTTCAT-TTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
438 CTTGGCCCTT-ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAG
* *
1793038 CATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
501 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
*
1793103 CAAATGATCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
566 CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * ** *
1793168 AATACAAGGATCATGTCTATCAAGTTTGGGGCCAAAACTCCTTCAAAAAAAATTTAAAAAAAATC
631 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* * * * * *
1793233 CCGAACCGTAAAAGGTTTCAAAAATCATGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTC
696 TCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
* * *
1793298 ACATGAAGGGTTAAGGGACCATTGTATGTATTTACAAGCCATAAAAATGGCATTGGCATGGCAAA
761 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
*
1793363 AATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCAC
826 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
1793408 GGCTTACGCATTCCGCCTCTCTAGCCGGCATAGTGCCCGCCCGCCCGCC-CGCTCGTTTCGTCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGC-CTCGTTTCGTCGG
*
1793472 TTGGC-----CATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACTGAGGGTTGCAGCAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GACCGGAC-GAGGGTTGCAGCAGTA
* ** * *
1793532 GGATCGACAGCATGCTGAGGGGGACCCGATCGATCCCCGGCTTGCGTATCCTGCCCCTCCAG-C-
128 GGATCGACAGCATGCAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCTGCCCCTCCAGCCG
* * * * * * * *
1793595 -C-GATC-CCCAGCATGTTCATTTCGTGGGTTAACTTAGGCATAGGGAGTTCATTTCCAG--CCT
192 GCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCAT
** * * * *
1793655 A-AG--A-T---CAGA-CTGGACCAAGGGTTGCAGGTGCACATGCTAGGCTAGGGCATGTGCTAG
256 AGAGTCACTCAGCAGATCACGACCGAGGGTTGC-GGTGCACATGCTGGGCTAGAGCATGTGCTGG
* ** * ** * *
1793712 TGCCGCA-TTTTTTTCGCTCGGGGTGCCATCG--TCGGAGAACCTGACCGACAACATT--TGTTT
320 TGCCGCATTTTTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGACCGACGGCATTGGGGTTC
** ** * * *
1793772 TAGCGATTAAGGGGTGGGTGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTATT
385 CGGCGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT-TA
1793837 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCACTTAAAGAGCATTTGAGATTT
449 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC-CTTAAAGAGCATTTGAGATTT
* * * *
1793902 TACAGGTTTCCTGCCAGTAGCAATTAAAGTGTTTAAAATGGGGACACTTTTTTCAAATAGTCACA
513 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
* ** *
1793967 AAATCCTGTACACTTCGAGTTTTGCAGCTGAATTTTTTTGCACATGCCAATAAAAATACAAGGAT
578 AAATCCTGTACACTTCGAGTTTT-TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
*
1794032 CACGTCCACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAA
642 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAA
* * * *
1794097 AAGGTTTCAAAATTTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGGT
707 AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
* *
1794162 TAAGGGACCATTGTTTGAATTTACAAGCCACAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
772 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAT
*
1794227 TTGCCTAAACCCACCTACCACCCTATCGATCCAC
837 GTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
1794261 GGCTTACGCATCCCGCCTCTCTAGCCGGCGTAATGCCCGCCCGCCTGCCCACCCGCTCATTTCGA
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCC--CGC-CGC-CTCGTTTCGT
* *
1794326 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCC
62 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCGGA-CGAGGGTTGCAGCA
*** * ** ** * * * **
1794391 GTAGGATCGGTTGCACGTGGAGGGGGACCCAACCGATCCCCGGCTTGAGCATCCTACCCCTCTGG
125 GTAGGATCGACAGCATGCAGAGGGGGACCCGGCCGAT-CCCGACTTGCGCATCCTGCCCCTCCAG
* * * * * *
1794456 TCGGCTGAGTGCCCGCACGCTCGTTCCGTGGGTTGACGTAGGCATATGGAGTTCATTGCCAG--C
189 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTC
* * * *
1794519 CTA-AG--A-T--GGA-ATC-GGACGGAGGGTTGCAGGTGCACATGCTGGGCTCA-AGCATGTGC
254 ATAGAGTCACTCAGCAGATCACGACCGAGGGTTGC-GGTGCACATGCTGGGCT-AGAGCATGTGC
* * * * **
1794575 TGGTGCCACATTTTTTTTCGCCCGGGCCACCATCG--TCAGAGAACCTGACCGGA-GGCATTGTT
317 TGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGACC-GACGGCATTGGG
*
1794637 GTTCCGACGATTGGGGGGGCCGGGGGAGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
381 GTTCCGGCGATT-GGGGGG-C--GGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* *
1794702 GACCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
441 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATT
* *
1794767 TGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
505 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAA
1794832 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
570 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * * *
1794897 CAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTTTTGAAAAAATTTTAAAAAAATCCCAA
635 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGA
** *
1794962 ACCGTAAAAAGTTTCAAAAATAATGAAAAATAGAAAACGAGTCGTCTTGCCACGAAACTTCACAT
700 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACAT
*
1795027 GAAGGCTTAAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
765 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATA
1795092 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
830 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
1795133 GGCTTGCGCATCCTGCCTCTCTAGCCGGCGTAGTGCCCGCCCGCCCGCC-CGCTTGTTTCGTCGG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGC-CTCGTTTCGTCGG
* ** * * * * * * **
1795197 TTAGCTTAGGCATATAGAGTTCATTCCTAGTATAAGATCAGACCAGACTGAGGGTTACGGCAACA
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCGGAC-GAGGGTTGCAGCAGTA
* * ** * * * * **
1795262 GGATCGGCAGCACGTTGAGTGGGACCCGGCCTATCCCTGGCTTGCGCATCCTACCCCTCTGGCCG
128 GGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCC-GACTTGCGCATCCTGCCCCTCCAGCCG
* * * * * *
1795327 ACTGAGCGCCCGCACGCTTGCTTCGTGCGTTGACTTAGGCATACAGAGTTCATTCCCAATCTAAG
192 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T---
* * * * *
1795392 CATACGGAGTTCATTCCTAGTCTATGATCGGACCAGATCGAAGGTTACGGGTGCACATGCTAGGC
253 CATA--GAG-TCACT-C-AG-C-A-GATC--A-C-GACCGAGGGTTGC-GGTGCACATGCTGGGC
* * * * * * *
1795457 TCGAGCAAGTGCTGGTGTCGCATTTTTTTTTGCCCAGGGCACCATCG-C-CGAAGAACCTGACTG
305 TAGAGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGACCG
* **
1795520 GCGGGTTTGGGGTTCCGGCGATTGGGGGGCGGTGGGGGTGTGCGCACATGATGTGCGATGGGTGC
370 ACGGCATTGGGGTTCCGGCGATTGGGGGGC-G-GGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
1795585 TGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
433 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAA
* * *
1795650 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGAACACTT
497 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
** *
1795715 TTTTCAAATGGTCACAAAATCCTGTACAGATCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAA
562 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
1795780 -AAAAAGTACAAGAATCACATCTACCAAGTTTGGGGCCAAAAATTCTTCTGAAAAAATTTTAAAA
627 CAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* * * *
1795844 AAATCTCAAACCGTAAAAAGTTTCAAAAGTCATGAAAAATAGAAAACGAGTCGTCCTGCCATGAA
691 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * *
1795909 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGAATTGGCACG
756 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * * *
1795974 GCAAAAATATGAAGATCTACCTAAACCCACCTACCACCATATCGATCAAC
821 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * *
1796024 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCACCCACC-CGGTCGTTTCGTCAG
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGC-CTCGTTTCGTCGG
** * * * ** *
1796088 TTGGCTTAGGCATACGGAGTTCATTCCTGGTCTAAGATCAGACCGAACTGAGGTTTGGGGCAGCA
65 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGACCGGAC-GAGGGTTGCAGCAGTA
* * * * * ** * * * * **
1796153 GGATTGATAGCACGCTGAGAGGGACCCTACCGATCCCTGGCTTGCACATCTTGCCCCTCTAGTTG
128 GGATCGACAGCATGCAGAGGGGGACCCGGCCGATCCC-GACTTGCGCATCCTGCCCCTCCAGCCG
* * * * *
1796218 GCTGAGCGCCCG-TCGCTCATTTCGTGAGTTGACTTAGGCATACGAAGTTCATTCCCAG-T-GTA
192 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCATA
* * *
1796280 -AG--A-TC-G--GA-C-CGGACCGAGGGTTTCGGGTGCACATGCTTGGCTCGAGCATGTGCTGG
257 GAGTCACTCAGCAGATCAC-GACCGAGGGTTGC-GGTGCACATGCTGGGCTAGAGCATGTGCTGG
* * * *
1796336 T-CCGCATTTTTTTTTGCTCGGGGTACCATCACCGAAGCATCATCGGAGAACCTGACCGACGGCA
320 TGCCGCATTTTTTTTCGCCCGGGGCACCAT---C---G-A-C-GCGGAGAACCTGACCGACGGCA
* * * *
1796400 TTGAGGTTCCGACGATTGGGGGGGTCGGGGGGGTGTGCGCACTTGATGTGCAATGGGTGCTGGTA
376 TTGGGGTTCCGGCGATT-GGGGGG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
1796465 CTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCA
438 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCA
* * *
1796529 TTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
503 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCA
* * *
1796594 AATAGTCACAAAATCCTGTACACTTTGAG-TTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
568 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * * * * *
1796658 TACAAGGATCATGTCTACCAACTTTAGGGCCAAAACTCCTTTTGAAAAAAGTTTAAAAAAATCAC
633 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTC
*
1796723 GAACCGTAAAAAGTTTCAAAAAT-GATGAAAAATAGAAAACGAGTCGTCCTGCCATGAAACTTCA
698 GAACCGTAAAAAGTTTCAAAAATCG-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * * * * *
1796787 CATGAAGGCCTAAGGGACTATTGTATTAATTTACAAGCCATAAAAATGACATTGGCAGGGCAAAA
762 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
*
1796852 ATATGAAGATGTGCCT------A---A--A-CCTATCTATCCAC
827 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * *
1796884 GGCTTGCGCATCCCGCCTCTCTAGCCGGCGTAGTGCCCCCCCGCCCGCC-CGCT-GATTTCATCT
1 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGC-CTCG-TTTCGTCG
* * ** * * * *
1796947 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTGAGACCGGACCAGACCGATGGTTGTAGCAGC
64 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TTGACCGGA-CGAGGGTTGCAGCAGT
* * * * * * * * *** *
1797012 AGGATCGACAGCACGCTGAGGGGGGCCCGACCGA-CCTTGGCTTGTGCATCCTACCCCTTTGGCA
127 AGGATCGACAGCATGCAGAGGGGGACCCGGCCGATCC-CGACTTGCGCATCCTGCCCCTCCAGCC
* * *
1797076 GGCTGAGCGCCCGCACACTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
191 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-T--
* * * *
1797141 GCATATGGAGTTTATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGGTGCACATGCTGGG
253 -CATA--GAG-TCA--CTCAG-C--AGATC--AC--GACCGAGGGTTG-CGGTGCACATGCTGGG
* * * *
1797206 CTCGGGCATGTGCTGGTGCTGCATTTTTTTTTCGCTCGGGGCACCATCG-C-CGGAGAACCTGAC
304 CTAGAGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGAC
* * ** * *
1797269 CGATGGCATTAGGGTTCAAGTGATTGGGGGGGCGGGGGGGTGTGCACACATGATGTGCGATGGGT
368 CGACGGCATTGGGGTTCCGGCGATT-GGGGGGC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * * * *
1797334 GCTGGTACCTGGCCCTTATTTTTGCCCCTTATCCCTCATCAAACATCGAGTACTCACACCCCTTT
431 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TT
*
1797399 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
495 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
* *
1797464 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCG
560 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
1797529 AAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCTAAAAAAATTTGAAA
625 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * **
1797594 AAAATCTCAAACCGTAAAAAGTTTTAAAAATTATGAAAAATAGAAAACG
690 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
1797643 GTTGTGAAAA
Statistics
Matches: 18768, Mismatches: 3575, Indels: 3155
0.74 0.14 0.12
Matches are distributed among these distances:
833 5 0.00
834 9 0.00
835 2 0.00
836 44 0.00
837 3 0.00
839 1 0.00
840 1 0.00
841 7 0.00
842 564 0.03
843 3 0.00
844 9 0.00
845 4 0.00
846 1 0.00
847 1 0.00
848 2 0.00
849 5 0.00
850 5 0.00
851 58 0.00
852 143 0.01
853 303 0.02
854 10 0.00
855 67 0.00
856 149 0.01
857 40 0.00
858 257 0.01
859 359 0.02
860 445 0.02
861 505 0.03
862 427 0.02
863 540 0.03
864 596 0.03
865 257 0.01
866 574 0.03
867 282 0.02
868 483 0.03
869 276 0.01
870 371 0.02
871 881 0.05
872 1207 0.06
873 694 0.04
874 1171 0.06
875 556 0.03
876 742 0.04
877 313 0.02
878 527 0.03
879 155 0.01
880 9 0.00
881 24 0.00
882 75 0.00
883 252 0.01
884 259 0.01
885 14 0.00
886 46 0.00
887 32 0.00
888 67 0.00
889 541 0.03
890 266 0.01
891 650 0.03
892 6 0.00
893 13 0.00
894 241 0.01
895 173 0.01
896 45 0.00
897 116 0.01
898 40 0.00
899 59 0.00
900 99 0.01
901 170 0.01
902 41 0.00
903 3 0.00
904 264 0.01
905 371 0.02
906 6 0.00
907 4 0.00
908 13 0.00
909 2 0.00
910 8 0.00
911 9 0.00
912 6 0.00
913 10 0.00
914 6 0.00
915 3 0.00
916 1 0.00
917 2 0.00
918 6 0.00
919 7 0.00
920 2 0.00
921 13 0.00
922 11 0.00
924 2 0.00
925 5 0.00
926 9 0.00
927 3 0.00
928 11 0.00
929 7 0.00
930 8 0.00
931 16 0.00
932 11 0.00
933 14 0.00
934 17 0.00
935 14 0.00
936 15 0.00
937 16 0.00
938 7 0.00
939 7 0.00
940 15 0.00
941 14 0.00
942 4 0.00
943 20 0.00
944 4 0.00
945 9 0.00
946 15 0.00
947 10 0.00
948 20 0.00
949 10 0.00
950 12 0.00
951 19 0.00
952 8 0.00
953 12 0.00
954 14 0.00
955 18 0.00
956 12 0.00
957 15 0.00
958 20 0.00
959 35 0.00
960 37 0.00
961 24 0.00
962 17 0.00
963 7 0.00
964 10 0.00
965 24 0.00
966 15 0.00
967 14 0.00
968 8 0.00
969 7 0.00
970 13 0.00
971 18 0.00
972 19 0.00
973 2 0.00
974 13 0.00
975 19 0.00
976 13 0.00
977 21 0.00
978 22 0.00
979 15 0.00
980 5 0.00
981 5 0.00
982 6 0.00
983 3 0.00
984 4 0.00
985 12 0.00
986 15 0.00
987 1 0.00
988 15 0.00
989 19 0.00
990 17 0.00
991 22 0.00
992 35 0.00
993 17 0.00
994 8 0.00
995 13 0.00
996 22 0.00
997 19 0.00
998 9 0.00
999 26 0.00
1000 22 0.00
1001 26 0.00
1002 15 0.00
1003 23 0.00
1004 18 0.00
1005 17 0.00
1006 16 0.00
1007 16 0.00
1008 21 0.00
1009 14 0.00
1010 17 0.00
1011 12 0.00
1012 7 0.00
1013 7 0.00
1014 11 0.00
1015 6 0.00
1016 10 0.00
1017 2 0.00
1018 11 0.00
1019 10 0.00
1020 14 0.00
1021 3 0.00
1022 3 0.00
1023 4 0.00
1024 29 0.00
1025 31 0.00
1026 46 0.00
1027 33 0.00
1028 24 0.00
1029 37 0.00
1030 159 0.01
1031 39 0.00
1032 57 0.00
1033 138 0.01
1034 58 0.00
1035 41 0.00
1036 22 0.00
1037 38 0.00
1038 148 0.01
1039 103 0.01
1040 86 0.00
1041 71 0.00
1042 141 0.01
1043 9 0.00
1044 15 0.00
1045 20 0.00
1046 26 0.00
1047 9 0.00
1048 4 0.00
1049 5 0.00
1050 8 0.00
1051 11 0.00
1052 7 0.00
1053 8 0.00
1054 9 0.00
1055 6 0.00
1056 4 0.00
1057 51 0.00
1058 3 0.00
1059 27 0.00
1060 10 0.00
1061 8 0.00
1062 10 0.00
1063 7 0.00
1064 6 0.00
1066 4 0.00
1067 13 0.00
1068 9 0.00
1069 9 0.00
1070 12 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (870 bp):
GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCGCCTCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGACCGGACGAGGGTTGCAGCAGTAGGA
TCGACAGCATGCAGAGGGGGACCCGGCCGATCCCGACTTGCGCATCCTGCCCCTCCAGCCGGCTG
AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTCATAGAGT
CACTCAGCAGATCACGACCGAGGGTTGCGGTGCACATGCTGGGCTAGAGCATGTGCTGGTGCCGC
ATTTTTTTTCGCCCGGGGCACCATCGACGCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGA
TTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCA
AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCAC
Found at i:1779266 original size:20 final size:20
Alignment explanation
Indices: 1779227--1779266 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
1779217 GTTAGCATAC
*
1779227 GAGTTCATTCCCATTCTAAG
1 GAGTTCATTCCCAGTCTAAG
1779247 GAGTGTCATTCCCAGT-TAAG
1 GAGT-TCATTCCCAGTCTAAG
1779267 ATCGAACCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (20 bp):
GAGTTCATTCCCAGTCTAAG
Found at i:1782254 original size:824 final size:823
Alignment explanation
Indices: 1780146--1782505 Score: 2630
Period size: 842 Copynumber: 2.8 Consensus size: 823
1780136 CGACTGGTTA
* * * * * * * *
1780146 GGGTGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTTCGCCTGGGCACCATCATTGT
1 GGGTGCACATGCTGGGCTAG-GCATGTGCTGATGCCGTATTTTTTCGCCGGGGCACCATCGTCGA
* *
1780211 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-AGCGATTGGGGGG-CGGGTGTGGTG
65 AGCATCGCCGGAAAACCTGACCGGCGGCATTGGGGTTCCGA-CGATTGGGGGGTC-GG-G-GGTG
* * *
1780274 TGCGCACATGATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCTCTCATCAA
126 TGCGCACATG-TTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * * *
1780339 ACCTCAAGAACTTAAACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
190 ACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAT
* *
1780404 TAAAGAGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTT
254 TAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
* * * * *
1780469 AGCTGAATTTTTTTATGCATGCCAACAAAAATAGAAGGATCACGTATACCAAGTTTGGGGGCAAA
319 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
*
1780534 AATCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATA
384 AATCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATA
* * *
1780599 AAAAACGAGACGTCTTGCCATGAAACTTGACATGAAGGCTTAAGCGACCATTGTATGAATTTACA
449 AAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
1780664 AGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCGTA
514 AGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * ** * *
1780729 TCAATCCATGACTTGTGCATCCCGCCTCTCTGGCCTTCATAGTGCCCGCCCGT-CCGCCCACTCA
579 TCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCC-TCCCGCCCGCTCA
* * * * * *
1780793 TTTTGTCGGTTGGCTTAAGCATACGAAGTTCATTCCCAGTGTAAGATTGAACCAGACCGAGGGTT
643 TTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAG-ACCAGACCAAAGGTT
* * * * * **
1780858 CCGGCAGCAGGATCGGTAGCTCACAGAGGGGGACTCGATCGATCCCCGACTTGCGCATCTTACCC
707 GCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGATCGAT-CCCGACTTGCGCATCTTACAG
** * ** * * ** * **** ** * *
1780923 CTTTA-GCCAGCTGAGCGCCCAGACGCT-CGTTTCGTG-GGTTGACTTAGGCTTAC
771 CGATACG-CAGCTCA-TTCCCAGA-TCTAAGCATCGAGTACCAGACCGAGGGTTGC
* * * ** * * * * ***
1780976 GGAGTTCA-TTCCCAGTCTAAG-ATCG-GATCA-GACCG-A-GGGTT-G-CGGGTGCA-CATGCT
1 GG-GTGCACATGCTGGGCTAGGCAT-GTGCTGATG-CCGTATTTTTTCGCCGGG-GCACCAT-C-
* * **** *** *
1781032 GGGCTCGAA-CATTTGCTGGTGCCACATTTTTTTTG-CCTGG-GGCACTATCATTGTAGCATCGA
60 --G-TCGAAGCA-TCGC-CG-G--A-A---AACCTGACC-GGCGGCA-T-T-GGGGT-TC--CGA
1781094 CGATTGGGAGGGTCGGGGGGTGTGCGCACATGTTGTGCGATGGGTGCTGGTACTTGGCCCTTATA
106 CGATTGGG-GGGTC-GGGGGTGTGCGCACATGTT-TGCGATGGGTGCTGGTACTTGGCCCTTATA
*
1781159 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCATTAAAGAGAATTTGAGATTTTA
168 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTA
* * *
1781224 CAGGTTTGCTACCAGTAGCCATTAAAGCGTCTGAAATGGGGACACTTTTTTCAAGTGGTCACAAA
232 CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAA
** *
1781289 ATCCCATACACTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
297 ATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAT
* * *
1781354 GTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAGTTTAAAAAAATCTCGAATCGTAAAAA
362 GTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAA
* * * *
1781419 GTTTTAAAAATTGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
427 GTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
** ** * *
1781484 GGGACCATTGTATGAATTTACAAGCCATAAAAATTACATTTTCATGGCAGAAATATGAATATATG
492 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTG
* * *
1781549 CCTAAAGCCACCTACCTCCCTATCGATCCACGGCTTGCACATCCCGCCTCTCTGGCCGGCGTAGT
557 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
** * * * *
1781614 GCCCGCCAACCCGCCCGCTCGTTTTGGCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
622 GCCCGCCCTCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
1781679 GATCAGACCAGACCAAAGGTTGCGGCAGCAGGATCGATAGCACGCTGAGGGGGACCCGACCAATC
687 GAT-AGACCAGACCAAAGGTTGCGGCAGCAGGATCGATAGCACGCAGAGGGGGACCCGATCGATC
* * * *
1781744 CCTGACTTTCACAGTC-TA-AGC-ATACGGAGTTCATTCCCAG-TCTAAG-ATC-AG-ACCAGAC
751 CC-GACTTGCGCA-TCTTACAGCGATACGCAGCTCATTCCCAGATCTAAGCATCGAGTACCAGAC
1781802 CGAGGGTTGC
814 CGAGGGTTGC
*
1781812 GGGTGCACATGCTGGGCTCAGGCATGTGTTGATGCCGTATTTTTTTTCGCTCGGGGCACCATCGT
1 GGGTGCACATGCTGGGCT-AGGCATGTGCTGATGCCGTA--TTTTTTCGC-CGGGGCACCATCGT
* *
1781877 CGAAGCATCGCTGGAAAACCTGACTGGCGGCATTGGGGTTCCGACGATTGGGGGGT-GGGGGTGT
62 CGAAGCATCGCCGGAAAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGTCGGGGGTGT
* *
1781941 GCGCACATGCTTTGTGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
127 GCGCACATG-TTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
*
1782006 CCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTT
191 CCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCA-TT
* * *
1782071 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCCTGTACACTTCGACTTTTTA
255 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
* * *
1782136 GCTAAATTCTTTTGTACATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
320 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA
** * * * **
1782201 CGCCTTCTGAAAAAATTTAAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATTATGAAAAATAA
385 ATCCTTCTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAA
*
1782266 AAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
450 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * * *
1782331 GCCATAAAAATGGCATTGGCACGGTAAAAATATGGAGATGTGCCTAAACCCACCTACTACCCTAT
515 GCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * ** * *
1782396 CGATCCACAGCCTGCGCATCCAACCTCTTTGGCCGGCGTAGTGCCCGCCCTCTCGCCCGCTCATT
580 CGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCTCCCGCCCGCTCATT
* *
1782461 TCATCGGTTGGCTTAGGCATACGAAGTTCATCCCCAGTCTAAGAT
645 TCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT
1782506 CAGAAGGGAT
Statistics
Matches: 1280, Mismatches: 196, Indels: 114
0.81 0.12 0.07
Matches are distributed among these distances:
823 41 0.03
824 483 0.38
825 7 0.01
826 6 0.00
827 13 0.01
828 8 0.01
829 9 0.01
830 10 0.01
831 6 0.00
832 5 0.00
833 6 0.00
835 5 0.00
836 24 0.02
837 11 0.01
838 11 0.01
839 10 0.01
840 15 0.01
841 13 0.01
842 573 0.45
843 9 0.01
844 8 0.01
845 7 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (823 bp):
GGGTGCACATGCTGGGCTAGGCATGTGCTGATGCCGTATTTTTTCGCCGGGGCACCATCGTCGAA
GCATCGCCGGAAAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGTCGGGGGTGTGCGC
ACATGTTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
AGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTG
TCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTT
CTGAAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACG
AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCTCCCGCCCGCTCATTTCGTCG
GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATAGACCAGACCAAAGGTTGCGGCAGCA
GGATCGATAGCACGCAGAGGGGGACCCGATCGATCCCGACTTGCGCATCTTACAGCGATACGCAG
CTCATTCCCAGATCTAAGCATCGAGTACCAGACCGAGGGTTGC
Found at i:1783128 original size:712 final size:713
Alignment explanation
Indices: 1781763--1783234 Score: 2113
Period size: 712 Copynumber: 2.1 Consensus size: 713
1781753 CACAGTCTAA
* * *
1781763 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTCCGGGTGCACATGCCGGG
* ** * *
1781828 CTCAGGCATGTGTTGATGCCGTATTTTTTTTCGCTCGGGGCACCATCGTCGAAGCATCGCTGGAA
66 CTCAGGCA-GCGTTGATGCCACATTTTTTTTCACTCGGGCCACCATCGTCGAAGCATCGCTGGAA
* * * *
1781893 AACCTGACTGGCGGCATTGGGGTTCCGACGATTGGGGGGTGGGGGTGTGCGCACATGCTTTGTGA
130 AACCTGACTGGCGGCATTGGGGTTCCGACGATTGGGGGGTGGGGGTGTGCGCAAATGATGTGCGA
*
1781958 TGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACC
*
1782023 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTTAAAGTGTCTGAAATGGG
260 CCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTTAAAGTGTCTGAAATGGG
* *
1782088 GACACTTTTTTCAAATGGTCGCAAAATCCTGTACACTTCGACTTTTTAGCTAAATTCTTTTGTAC
325 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGACTTTTTAGCTAAATTCTTTTATAC
* *
1782153 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATT
390 ATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATT
* * *
1782218 TAAAAAAAATCCCGAATCGTAAAAAGTTTCAAAAATTATGAAAAATAAAAAACAAGTCGTCTTGC
455 TAAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGC
* *
1782283 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATCGCATT
* * *
1782348 GGCACGGTAAAAATATGGAGATGTGCCTAAACCCACCTACTACCCTATCGATCCACAGCCTGCGC
585 GGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCCTGCGC
* * * *
1782413 ATCCAACCTCTTTGGCCGGCGTAGTGCCCGCCCTCTCGCCCGCTCATTTCATCGGTTGGCTTAG
650 ATCCAACCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAG
* * ** *
1782477 GCATACGAAGTTCATCCCCAGTCTAAGATCAGAAGGGATCGAGGGTTCCGGGTGCACATGCCGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTCCGGGTGCACATGCCGGG
* * *
1782542 CTCGGGC-GCGTCTGGTGTCACATTTTTTTTCACTC-GGCCACCATCGTCGAAGCATCG-TCGGA
66 CTCAGGCAGCGT-TGATGCCACATTTTTTTTCACTCGGGCCACCATCGTCGAAGCATCGCT-GGA
* * *
1782604 GAACCTGACTGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCTGGGGAG-GTGTGCAAATGATGT
129 AAACCTGACTGGCGGCATTGGGGTTCCGACGATT-GGGGGG-TGGGG-GTGTGCGCAAATGATGT
*
1782668 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCA
* *
1782733 CACCTCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCA-TTAAAGTGTCTGAAA
256 CACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTTAAAGTGTCTGAAA
* * * *
1782797 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAGTTTGAGTTTTTAGCTGAACTT-TTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGACTTTTTAGCT-AAATTCTTT
* * *
1782861 TATGCTTTACC-ACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCTAAAACTCCTTCTGA
385 TATAC-ATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACGCCTTCTGA
* * * *
1782924 AAAAA-TTAAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAACT-GAAAACGAGT
448 AAAAATTTAAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAA-TAAAAAACAAGT
*
1782987 CGTCTTGTCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGACA-TTACAAGCCATAAA
512 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGA-ATTTACAAGCCATAAA
* * *
1783051 ATTCGCATTGGCACGGCAGAACTATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
576 AATCGCATTGGCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * ** * * * *
1783116 GGCTTGCGCATCCCGCCTCTCTGGCTGGAGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGT
641 AGCCTGCGCATCCAACCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGT
1783181 TGGCTTAG
706 TGGCTTAG
* ** * *
1783189 G-ATACGGATTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTT
1783235 GCAGTAGCAG
Statistics
Matches: 673, Mismatches: 75, Indels: 23
0.87 0.10 0.03
Matches are distributed among these distances:
711 38 0.06
712 293 0.44
713 147 0.22
714 194 0.29
715 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGAACAGACCGAGGGTTCCGGGTGCACATGCCGGG
CTCAGGCAGCGTTGATGCCACATTTTTTTTCACTCGGGCCACCATCGTCGAAGCATCGCTGGAAA
ACCTGACTGGCGGCATTGGGGTTCCGACGATTGGGGGGTGGGGGTGTGCGCAAATGATGTGCGAT
GGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGACTTTTTAGCTAAATTCTTTTATACA
TACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATTT
AAAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACAAGTCGTCTTGCC
ATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATCGCATTG
GCACGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCCTGCGCA
TCCAACCTCTCTGGCCGGAGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAG
Found at i:1784456 original size:874 final size:872
Alignment explanation
Indices: 1782466--1784884 Score: 3431
Period size: 873 Copynumber: 2.8 Consensus size: 872
1782456 TCATTTCATC
* * * * ** * *
1782466 GGTTGGCTTAGGCATACGAAGTTCATCCCCAGTCTAAGATCAGAAGGGATCGAGGGTTCCGGGTG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTG
* * ** * * * *
1782531 CACATGCCGGGCTCGGGCGCGT-CTGGTG-TCACA-TTTTTTTTCACTC-GGCCACCATCGTCGA
66 CACATGCTGGGCTCAGGCATGTGCTGGTGCT-ACATTTTTTTTTCGC-CGGGGCACCATCGCCGG
*
1782592 AGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCTGGGGAGGTGT
129 AGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGG-GGTGT
* * *
1782657 --GCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAA
193 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
1782720 CCTCGAGAACTCACA-CCTCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATT
258 CCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATT
*
1782784 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAGTTTGAGTTTTTA
323 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTA
* *
1782849 GCTGAACTTTTTTATGCTTTACC-ACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCTAA
388 GCTGAACTTTTTTATGC-ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AA
* *
1782912 AACTCCTTCTGAAAAAATTAAAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAACT
451 AACTCCTTCTGAAAAAATTAAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAA-T
* *
1782977 -GAAAACGAGTCGTCTTGTCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGACA-TTA
515 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAG-GACCATTGTAT-AAATTTA
* * ** *
1783040 CAAGCCATAAAATTCGCATTGGCACGGCAGAACTATGAAGATGTGCCTAAACCCACCTACCACCC
578 CAAGCCATAAAAATGGCATTGGCAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
*
1783105 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCTGGAGTAGTGCCCGCTCGCCCGCCCGCTC
643 TATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGAGTAGTGCCCGCTCGCCCGCCCGCTC
* * *
1783170 GTTTCGTCGGTTGGCTTAGGATACGGATTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGGTT
708 GTTTCATCGGTTGGCTTAGGATACGAATTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTT
** * *
1783235 GCAGTAGCAGGATTGGAAGCACATTGAGGGGGACACGATCGATCCCCAGCTTGCTCATCCTGCCT
773 GCACCAGCAGGATTGGAAGCACATTGAGGGGGACACGATCGATCCCCAGCTTGCACATCCTGCCC
* * *
1783300 CTCTGGTCGGCTGAGCGCTCGCACACTCGTTTCGT
838 CTCTAGTCGGCTAAGCGCCCGCACACTCGTTTCGT
* *
1783335 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGAGTG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTG
*
1783400 CACATGCTGGGCTCAGGCATGTGCTGGTGC--CGTATTTTTTTTCGCCCGGGGCACCATCGCCGG
66 CACATGCTGGGCTCAGGCATGTGCTGGTGCTACAT-TTTTTTTTCG-CCGGGGCACCATCGCCGG
* * * * ***
1783463 AGCATCGTCGGAGAACCTGACTGGTGACATTTGGGTTCCGGCGATCGGGAGGGTTGGGGGGGTGT
129 AGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATTGGG-GGGGCCGGGGGGTGT
* * * *
1783528 GCGCACATGATGTGTGATGGGTGCTGGTACTTGACCATTAAATTGGCCCCCTATCCTTCATCAAA
193 GCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * * *
1783593 CCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCTTT
258 CCTCTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATT
* *
1783658 AAAGTGTCTGAAATGGGGACAC-TTATTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTA
323 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTA
* *
1783722 GCTAAAGTTTTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
388 GCTGAACTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * **
1783786 CTCCTTCTGAAAAAATAAAAAAAAAATCCCCAACCGTAAAAAGTTTTAAAAATTATGAAAAATAG
453 CTCCTTCTGAAAAAAT-TAAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAG
1783851 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGACCATTGTATAAATTTACAAG
517 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGACCATTGTATAAATTTACAAG
*
1783916 CCATAAAAATGGCATTGGCAATGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATC
582 CCATAAAAATGGCATTGGCAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
1783981 GATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-ATCCGCCTGCCCGCTCGTT
647 GATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGGAGTAGTGCCCGCT-CGCCCGCCCGCTCGTT
* **
1784045 TCATCGGTTGGCTTAGGCATATGAAGTTT-ATTCCCAGTCTAAGATCGGACTGGA-CGCAGGGTT
711 TCATCGGTTGGCTTAGG-ATACGAA-TTTCATTCCCAGTCTAAGATCGGACCAGATCG-AGGGTT
* * * * *
1784108 GCACCAGCAGGATTGGCAGCACGTTGCGGGGGACCCGA-CTGATCCCCGGCTTGCACATCCTGCC
773 GCACCAGCAGGATTGGAAGCACATTGAGGGGGACACGATC-GATCCCCAGCTTGCACATCCTGCC
* *
1784172 CCTCTAGTCGGCTAAGCGCCCGTACGCTCGTTTCGT
837 CCTCTAGTCGGCTAAGCGCCCGCACACTCGTTTCGT
1784208 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGT
1 -GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGT
*
1784273 GCACATGCTAGGCTCAGGCATGTGCTGGTGCTACATTTTTTTTTCGCCAGGGGCACCATCGCCGG
65 GCACATGCTGGGCTCAGGCATGTGCTGGTGCTACATTTTTTTTTCGCC-GGGGCACCATCGCCGG
** * * * *
1784338 AGCATTATCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTG
129 AGCATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTG
* * *
1784403 CGCACATGATGTGTGATGGGTGTTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTCATCGAAC
194 CGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
*
1784468 CT-TGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATT
259 CTCT-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATT
*
1784532 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCCTGTACACTTTGAGTTTTTA
323 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTA
* * * *
1784597 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATGACGTCTACGAAGTTTGGGGCCAAAA
388 GCTGAACTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * ** *
1784662 CGCCTTCTGAAAAAATTTTAAAAAAATCTCGTATAGTAAAAAATTTTAAAAATCGTGAAAAATAG
453 CTCCTTCTGAAAAAA-TTAAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAG
* * * * *
1784727 AAAACGAGTCGTCTTGCCATGAAACTTGACATGAAGGCTCAAGGGACCATTTTCTAAATTCACAA
517 AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA-GGACCATTGTATAAATTTACAA
* *
1784792 GCCATAAAAATGGCATTGGC-ATGGCAGAAATATGAGGATGTCCCTAAACCCACCTACCACCCTA
581 GCCATAAAAATGGCATTGGCAAT-GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
1784856 TCGATCCACGGCTTGCGCATCCCGCCTCT
645 TCGATCCACGGCTTGCGCATCCCGCCTCT
1784885 ATGCTCAGGG
Statistics
Matches: 1377, Mismatches: 143, Indels: 52
0.88 0.09 0.03
Matches are distributed among these distances:
868 1 0.00
869 74 0.05
870 16 0.01
871 69 0.05
872 215 0.16
873 324 0.24
874 313 0.23
875 115 0.08
876 145 0.11
877 105 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (872 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTG
CACATGCTGGGCTCAGGCATGTGCTGGTGCTACATTTTTTTTTCGCCGGGGCACCATCGCCGGAG
CATCGTCGGAGAACCTGACTGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCG
CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
CTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTACTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCT
GAACTTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCTGAAAAAATTAAAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAA
CGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGACCATTGTATAAATTTACAAGCCAT
AAAAATGGCATTGGCAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGCCTCTCTGGCCGGAGTAGTGCCCGCTCGCCCGCCCGCTCGTTTCATC
GGTTGGCTTAGGATACGAATTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCACCAGC
AGGATTGGAAGCACATTGAGGGGGACACGATCGATCCCCAGCTTGCACATCCTGCCCCTCTAGTC
GGCTAAGCGCCCGCACACTCGTTTCGT
Found at i:1797151 original size:26 final size:26
Alignment explanation
Indices: 1797115--1797167 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1797105 GTTGACTTAG
1797115 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
1797141 GCATATGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1797167 G
1 G
1797168 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1798219 original size:684 final size:684
Alignment explanation
Indices: 1797000--1798326 Score: 1912
Period size: 684 Copynumber: 1.9 Consensus size: 684
1796990 CCAGACCGAT
* * * ** *
1797000 GGTTGTAGCAGCAGGATCGACAGCACGCTGAGGGGGGCCCGACCGACCTTGGCTTGTGCATCCTA
1 GGTTGCAGCAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGACCCCGGCTTGCGCATCCTA
* * *
1797065 CCCCTTTGGCAGGCTGAGCGCCCGCACACTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCAT
66 CCCCTCTAGCAGGCTGAGCGCCCGCACACTCATTTCGTGAGTTGACTCAGGCATACGGAGTTCAT
* * * * * **
1797130 TCCCAGTCTAAGCATATGGAGTTTATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGTGGGTG
131 TCCCAGTCTAAGCATATGAAGTTCAATCCCAGTCTAAGATCAGACTAGACCGAGGGTTACGGGTG
* * * *
1797195 CACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTTTTTCGCTCGGGGCACCATCGCCGGA
196 CACATGCTGGACTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCTCAGGACACCATCGCCGGA
* * * *
1797260 GAACCTGACCGATGGCATTAGGGTTCAAGTGATTGGGGGGGCGGGGGGGTGTGCACACATGATGT
261 GAACCTGACCGACGGCATTAGGGTTCAAGCGATTGGGAGGGCGGGGGAGTGTGCACACATGATGT
* * *
1797325 GCGATGGGTGCTGGTACCTGGCCCTTATTTTTGCCCCTTATCCCTCATCAAACATCGAGTACTCA
326 GCGATGGGTGCTGGTACCTGGCCCTTATATTCGCCCCTTATCCCTCATCAAACATCGAGAACTCA
* * *
1797390 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
391 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAA
1797455 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
456 TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* *
1797520 GTGCATGCGAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCTAAAAA
521 GTGCATGC-AAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAA
* *
1797585 AATTTGAAAAAAATCTCAAACCGTAAAAAGTTTTAAAAAT-TATGAAAAATAGAAAACGGTTGTG
585 AATTTGAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCTATGAAAAATAGAAAACGGTTGTG
1797649 AAAAATCTCAAACCGTAAGATTGGATCAGACTTAG
650 AAAAATCTCAAACCGTAAGATTGGATCAGACTTAG
* ***
1797684 GGTTGCAGCAGTAGGATCGACAGCACACTGAGGGGGACCCGGTTGATCCCCGGCTTGCGCATCCT
1 GGTTGCAGCAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGA-CCCCGGCTTGCGCATCCT
* * * * ** * *
1797749 GCCCCTCTAGCCGGTTGAGCGCCCGCACGCTTGTTTTGTGGGTTGACTCAGGCATACGGAGTTCA
65 ACCCCTCTAGCAGGCTGAGCGCCCGCACACTCATTTCGTGAGTTGACTCAGGCATACGGAGTTCA
**
1797814 TTCCCAGTCTAAGCATATGAAGTTCAATCCCAGTCTAAGATTGGA-TCAGACCGAGGGTTACGGG
130 TTCCCAGTCTAAGCATATGAAGTTCAATCCCAGTCTAAGATCAGACT-AGACCGAGGGTTACGGG
* * * * *
1797878 TGCACATGCTGGACTCTGTCATGTGCTGGTGCCGCA-TTTTTTTTCGCTCAGGATACTATCGTCG
194 TGCACATGCTGGACTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCTCAGGACACCATCGCCG
* * * *
1797942 GATAACCTGATCGACGGCATTGGGGTTC-CGACGATT-GGAGGGCGGAGGGAGTGTGCACACATG
259 GAGAACCTGACCGACGGCATTAGGGTTCAAG-CGATTGGGAGGGCGG-GGGAGTGTGCACACATG
* *
1798005 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTCG-CCCTCTATCCCTCATCAAACCTCGAGA
322 ATGTGCGATGGGTGCTGGTACCTGGCCCTTATATTCGCCCCT-TATCCCTCATCAAACATCGAGA
1798069 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTC
386 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTC
* * *
1798134 TGAAATGGGGACAC-TTTTTCAAATGGTGACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATT
451 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATT
*
1798198 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCT
516 TTTTTGTGCATG-CAAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * ** * * *
1798263 GAAATAATTTTTAAAAAATCCCGAACGGTAAAAAGTTTCAAAAATCTGTGAAAAATAGAAAACG
580 AAAAAAATTTGAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCTATGAAAAATAGAAAACG
1798327 AGTCGTCTTG
Statistics
Matches: 566, Mismatches: 70, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
683 157 0.28
684 255 0.45
685 154 0.27
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (684 bp):
GGTTGCAGCAGCAGGATCGACAGCACACTGAGGGGGACCCGACCGACCCCGGCTTGCGCATCCTA
CCCCTCTAGCAGGCTGAGCGCCCGCACACTCATTTCGTGAGTTGACTCAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATATGAAGTTCAATCCCAGTCTAAGATCAGACTAGACCGAGGGTTACGGGTG
CACATGCTGGACTCGGGCATGTGCTGGTGCCGCATTTTTTTTTCGCTCAGGACACCATCGCCGGA
GAACCTGACCGACGGCATTAGGGTTCAAGCGATTGGGAGGGCGGGGGAGTGTGCACACATGATGT
GCGATGGGTGCTGGTACCTGGCCCTTATATTCGCCCCTTATCCCTCATCAAACATCGAGAACTCA
CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAA
TGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
GTGCATGCAAAAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAA
ATTTGAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCTATGAAAAATAGAAAACGGTTGTGA
AAAATCTCAAACCGTAAGATTGGATCAGACTTAG
Found at i:1799744 original size:864 final size:871
Alignment explanation
Indices: 1798687--1800807 Score: 2532
Period size: 901 Copynumber: 2.4 Consensus size: 871
1798677 GTTGACTTAG
* * * * * *
1798687 GCATACGGAGTTCATTCCCAATCTAAGATTGGACCGGACCGAAGGTTGTGGGTGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGAACTGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * * *
1798752 CTCTGGCTTGTGCTGGTGCTGCATTTTTTTTGACTGAGGCACCATCATCGGAGCATCGTCGGAGA
66 CTC-GACATGTGCTGGTGC-GCATTTTTTTTGCCCG-GGCACCATCATCGGAGCAACGTCGGAGA
* * * *
1798817 ACCTGACCGGCAGCATTGGGGA-TCCGATGATTGGGAAGGCCGGGGGGTGTACGCACATGATGTG
128 ACCTGACCGGCGGCATT-GGGATTCCGACGATTGGG-GGGCCGGGGGGTGTGCGCACATGATGTG
* * *
1798881 CGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCGTTAAACCTCGAAAAACTCA
191 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG-AAAACTCA
1798946 CACCCCCTTTAAAGACCATTTGAGATTTT-CAGGTTTGCCTGCCCAGTAGCCATTTAAAGTGTCT
255 CACCCCC-TTAAAGACCATTTGAGATTTTACAGGTTTG-CTG-CCAGTAGCCA-TTAAAGTGTC-
*
1799010 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATTCCGGTACACTTCGTAGTTTTTAGCTGAA
315 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATTCCGATACACTTCG-AGTTTTTAGCTGAA
*
1799075 -TTGTTT-TG-G-C-G-A-CCAA-A-A-AC-G-T-CCTT-TGAAA-AAATTTTAAAAAAT-CTCG
379 TTTGTTTATGAGCCAGAATACAAGACACACAGTTACCTTCTGAAAGAAATTTTAAAAAATAC-CG
* * *
1799124 AACCGT-AAAATTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACA
443 AACCGTAAAAAGTTTCAAAAATCATAAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACA
* * *
1799188 TGAAGGCTTCAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCGGAAAT
508 TGAAGGCTTAAGGGACAATTGT-TGAATTTACAAGCCATAAAAATAGCATTGGCATGGCAGAAAT
* * * *
1799253 ATAAAGATGAGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCACGCCTGTCTG
572 ATAAAGATGAGCCTAAAACCACCTACCACCCAATCGATCCACGGCTTACGCATCACGCCTCTCTG
* * * * * * *
1799318 GCTGATGTACTGCCCGCCTATCCG-TCACTCGTTTCGTCGATTGGCTTAGGCATGCGGAGTTCAT
637 GCCGACGTACTGCCCGCCCACCCGACCACTCGTTTCGTCGATTGGCTTAAGCATACGGAGTTCAT
*
1799382 T-CCAATCTAAGATCAGACC-AGACTGAGGGTTACGG-TAGCAAGATCGACAGCACACTGAGGGG
702 TCCCAATCTAAGATCAGACCGA-ACCGAGGGTTACGGCT-GCAAGATCGACAGCACACTGAGGGG
*
1799444 AACCCGGCTGATCCCCAGCTTGCACATCTTGCCCCTCTGGCCGGCT-GAGCACCCGCACGCTCGT
765 AACCCGACTGATCCCCAGCTTGCACATCTTGCCCCTCTGGCCGG-TAGAGCACCCGCACGCTCGT
*
1799508 TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
829 TTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
1799551 GCATATGAATTTCATTCCTAATCTAGGATCGAACTGGACCGAGGGTTACGGGTGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGAACTGGACCGAGGGTTGCGGGTGCACATGCTGGG
* * * *
1799616 CTCAGACATGTGCTGGTGTCGCATTTTTTTTCGCCCGGCCACCATCGTCGGAGCAACGCCAGAGA
66 CTC-GACATGTGCTGGTG-CGCATTTTTTTT-GCCCGGGCACCATCATCGGAGCAACGTCGGAGA
* * * *
1799681 ACCTGACTGGTGGCATTGAGATTCCGACGATTAGGGGGGCCGGGGGGTGTGTGCACATGATGTGC
128 ACCTGACCGGCGGCATTGGGATTCCGACGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
1799746 GATGGGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
192 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACA
* * * *
1799811 CCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTACCAATAGCCGTTAAAGTGTCTAAAATG
257 CCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
1799876 GGGACACTTTTTTCAAATGGTCACAAAA-TCCTATACACTTTGAGTTTTTAGCTGAATTTTTTTA
322 GGGACACTTTTTTCAAATGGTCACAAAATTCCGATACACTTCGAGTTTTTAGCTGAATTTGTTTA
1799940 TGCATGCCAAAAAGAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACACCTTCTGAAAG
387 TG-A-GCC----AG-AATACAA-GA-CA---C-AC--AG-TT-----------ACCTTCTGAAAG
* * *
1800005 AATTTTTAAAAAATACCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAAAAAACGAGTCGTC
425 AAATTTTAAAAAATACCGAACCGTAAAAAGTTTCAAAAATCATAAAAAATAAAAAACGAGTCATC
*
1800070 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTTGAATTTACAAGCCATAAAAATAGC
490 TTGCCATGAAACTTCACATGAAGGCTTAAGGGACAATTGTTGAATTTACAAGCCATAAAAATAGC
* * *
1800135 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCAATCGATCCACGGGTTA
555 ATTGGCATGGCAGAAATATAAAGATGAGCCTAAAACCACCTACCACCCAATCGATCCACGGCTTA
* * * * * *
1800200 CGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGACCGCTCGTTTCGTCGGTTGGCTT
620 CGCATCACGCCTCTCTGGCCGACGTACTGCCCGCCCACCCGACCACTCGTTTCGTCGATTGGCTT
* ** * * *
1800265 AAGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCGAGGGTTACGGCTGCAGGATTGG
685 AAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTACGGCTGCAAGATCGA
** * * * * * * *
1800330 CAGCATGCTGAGGGGGACCCGACTGATTCCCGGCTTGCGCATCTTGCCCCTTTGTCTGGTAGAGC
750 CAGCACACTGAGGGGAACCCGACTGATCCCCAGCTTGCACATCTTGCCCCTCTGGCCGGTAGAGC
* * *
1800395 GCCTGCACGCTCGTTTCGTGGGTTGACATAGGCATACAGAGTTCATTCTCAGTCTAA
815 ACCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
1800452 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACTGGACCGAGGGTTGCGGGTACACATGCTGG
1 GCATACGAAGTTCATTCCCAATCTAAGATCGA-ACTGGACCGAGGGTTGCGGGTGCACATGCTGG
* * * * * *
1800516 GCTCGAGCATGTGCTGGTGCCGTATTTTTTTTTGCCAGGGGCGCCATCACCAGAG-AATCATCGG
65 GCTCGA-CATGTGCTGGTG-CGCA-TTTTTTTTGCC-CGGGCACCATCATCGGAGCAA-CGTCGG
* * * * * *
1800580 AGAACCTGGCCAGCGGTATTGGGGTTCCGGCGATCGGGGGGGCCGGAGGGGTGTGCGCACATGAT
125 AGAACCTGACCGGCGGCATTGGGATTCCGACGAT-TGGGGGGCCGG-GGGGTGTGCGCACATGAT
** * *
1800645 GTAAGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGACAACT
188 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACT
*
1800710 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
253 CACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
1800775 AATGGGGACACTTTTTTCAAATGGTCACAAAAT
318 AATGGGGACACTTTTTTCAAATGGTCACAAAAT
1800808 CCTCTACAGT
Statistics
Matches: 1062, Mismatches: 133, Indels: 84
0.83 0.10 0.07
Matches are distributed among these distances:
857 14 0.01
858 16 0.02
859 36 0.03
860 10 0.01
861 8 0.01
862 24 0.02
863 26 0.02
864 203 0.19
865 7 0.01
868 1 0.00
870 1 0.00
871 3 0.00
873 1 0.00
875 1 0.00
880 2 0.00
883 1 0.00
885 1 0.00
897 4 0.00
898 5 0.00
899 135 0.13
900 114 0.11
901 219 0.21
902 61 0.06
903 169 0.16
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (871 bp):
GCATACGAAGTTCATTCCCAATCTAAGATCGAACTGGACCGAGGGTTGCGGGTGCACATGCTGGG
CTCGACATGTGCTGGTGCGCATTTTTTTTGCCCGGGCACCATCATCGGAGCAACGTCGGAGAACC
TGACCGGCGGCATTGGGATTCCGACGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCC
CTTAAAGACCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATTCCGATACACTTCGAGTTTTTAGCTGAATTTGTTTATGAG
CCAGAATACAAGACACACAGTTACCTTCTGAAAGAAATTTTAAAAAATACCGAACCGTAAAAAGT
TTCAAAAATCATAAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGG
GACAATTGTTGAATTTACAAGCCATAAAAATAGCATTGGCATGGCAGAAATATAAAGATGAGCCT
AAAACCACCTACCACCCAATCGATCCACGGCTTACGCATCACGCCTCTCTGGCCGACGTACTGCC
CGCCCACCCGACCACTCGTTTCGTCGATTGGCTTAAGCATACGGAGTTCATTCCCAATCTAAGAT
CAGACCGAACCGAGGGTTACGGCTGCAAGATCGACAGCACACTGAGGGGAACCCGACTGATCCCC
AGCTTGCACATCTTGCCCCTCTGGCCGGTAGAGCACCCGCACGCTCGTTTCGTGGGTTGACATAG
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1800462 original size:26 final size:26
Alignment explanation
Indices: 1800426--1800478 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1800416 GTTGACATAG
*
1800426 GCATACAGAGTTCATTCTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
1800452 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1800478 G
1 G
1800479 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1801990 original size:26 final size:26
Alignment explanation
Indices: 1801954--1802005 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1801944 TTGACTTAGC
1801954 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
1801980 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
1802006 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:1805198 original size:407 final size:393
Alignment explanation
Indices: 1804452--1805235 Score: 1128
Period size: 407 Copynumber: 2.0 Consensus size: 393
1804442 GTTCATTTCT
*
1804452 AGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTTACGGGTGCACA
1 AGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGGTGCACA
** * * *
1804517 TGCTGGGCTTTGGCATGTGCTGGTGCCGCATTTTTTTTCCCTCGGGGCACCATCGCTGGAGAACT
66 TGCTGGGCTCGGGCATGCGCTGGTGCCACATTTTTTTTCCCTCGGGGCACCATCGCTGGAGAACC
* *
1804582 TGACCGACGGCTTTGGGGTTCCGACGATTGGGGGCGGGGGGTGTACGCACATGATGTGCGATGGG
131 TGACCGACGGCATTGAGGTTCCGACGATTGGGGGCGGGGGGTGTACGCACATGATGTGCGATGGG
*
1804647 TGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCT
196 TGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
1804712 TAAAGAGCATTTCAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACA
261 TAAAGAGCATTTCAGATTTTACAGGTTTGCTGCTAATAGCCATTAAAGTGTATGAAATGGGGACA
*
1804777 CTTTTTTCAAATGGTCACAAAATCCTGTACACATCGA-GTTTTTAGCTGAATTTTCCCCAACTGT
326 CTTTTTTCAAATGGTCACAAAATCCTGTACACATC-ACATTTTTAGCTGAATTTTCCCCAACTGT
1804841 AAAA
390 AAAA
* * ** *
1804845 AGTCTAAGCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGGTGCACA
1 AGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGGTGCACA
*
1804910 TGCTGGGCTCGGGCATGCGCTGGTGTCACATTTTTTTTCGCC-CGGGGCACCATCACCGGAGCAT
66 TGCTGGGCTCGGGCATGCGCTGGTGCCACATTTTTTTTC-CCTCGGGGCACCAT---C---G---
* *
1804974 CATCGGAGAACCTGTCCGACGGCATT-AGGTTCCGACGATTGGGGGGGCCGGGGGGGTGTGCGCA
121 C-T-GGAGAACCTGACCGACGGCATTGAGGTTCCGACGATT--GGGGG-C-GGGGGGTGTACGCA
* *
1805038 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCG
180 CATGATGTGCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
*
1805103 AGAACTCACACCCCCTTAAGGAGCA-TTCGAGATTTTACAGGTTTGCTGAC-AATAGCCATTAAA
245 AGAACTCACACCCCCTTAAAGAGCATTTC-AGATTTTACAGGTTTGCTG-CTAATAGCCATTAAA
* *
1805166 GTGTATGAAATGGGGACACTTTTTTCAAATGGTCACGAAATCCTGTACACTTCACATTTTTAGCT
308 GTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACATCACATTTTTAGCT
1805231 GAATT
373 GAATT
1805236 GTTTTGTGCA
Statistics
Matches: 346, Mismatches: 26, Indels: 24
0.87 0.07 0.06
Matches are distributed among these distances:
393 104 0.30
394 2 0.01
396 1 0.00
399 1 0.00
402 1 0.00
403 14 0.04
404 19 0.05
405 5 0.01
406 5 0.01
407 193 0.56
408 1 0.00
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (393 bp):
AGTCCAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTACGGGTGCACA
TGCTGGGCTCGGGCATGCGCTGGTGCCACATTTTTTTTCCCTCGGGGCACCATCGCTGGAGAACC
TGACCGACGGCATTGAGGTTCCGACGATTGGGGGCGGGGGGTGTACGCACATGATGTGCGATGGG
TGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTCAGATTTTACAGGTTTGCTGCTAATAGCCATTAAAGTGTATGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCCTGTACACATCACATTTTTAGCTGAATTTTCCCCAACTGTA
AAA
Found at i:1805764 original size:26 final size:26
Alignment explanation
Indices: 1805728--1805780 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1805718 GTTTACTTAG
1805728 GCATACGAAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
*
1805754 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
1805780 G
1 G
1805781 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:1806648 original size:26 final size:26
Alignment explanation
Indices: 1806618--1806670 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1806608 GTTGACTTAG
*
1806618 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
1806644 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1806670 G
1 G
1806671 ATTGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1809869 original size:715 final size:714
Alignment explanation
Indices: 1808388--1809874 Score: 2182
Period size: 715 Copynumber: 2.1 Consensus size: 714
1808378 CATGGTTTGA
* *
1808388 CTTAGGCATACAGAGTTCATTCCCAGTCTAAAATCGGA-TCAGACTGAGGGTT-TCGGGTGCACA
1 CTTAGGCATA-AGAGTTCATTCCCAGTCTAAGATCGGACT-AGAC-GAGGGTTGT-GGGGGCACA
* ** * *
1808451 TGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTTTTCGTCGGGGGCACCATCGCCGGAGCATC
62 TGCTGGGCTCAGGCAGGTGCTGGTGCCACATTTTTTTTCACCCGAGGCACCATCGCCGGAGCATC
* * * *
1808516 GTCGAAGAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCCGGGGGGTGTGCGTAC
127 GTCGAAGAACCTGACCAGCGACATTGGGGTTCCGACGATTGGGGGGGCCCAGGGGGTGTGCGCAC
* *
1808581 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTCTATTGGACCCCTATCCCTCATCAAACCTCGA
192 ATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAA
1808646 GAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
257 GAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
* * *
1808711 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTTCAATTTTTTATCTAAT
322 TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTACAAGTTTTTAGCTAAT
* * *
1808776 TTTTTTTGTGCATGCCCATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTC
387 TTTTTTTGGGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTC
1808841 TGAAAAATTTTTAAAAAATGCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAG
452 TGAAAAATTTTTAAAAAATGCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAG
* *
1808906 TCGTCTTGCCAGGAAACTTCACATGAAGGCTTAAGTGACCATTGTATGAATTTACAAGCCATAAA
517 TCGTCCTGCCAGGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAA
1808971 AATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCAC
582 AATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCAC
* * * * * * *
1809036 GGCTTGCGCGTCCCGCCTCTCTGGCCGACGTAGTGGCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
647 GGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCACCCGCCCGCCCACTCGTTTCATCAGT
1809101 TGG
712 TGG
* * * * *
1809104 CTTAGGCATACGGAGTTAATTCCCAATATAAGATCGGACCAGACCGAGGGTTGTGGGGGCACATG
1 CTTAGGCATA-AGAGTTCATTCCCAGTCTAAGATCGGACTAGA-CGAGGGTTGTGGGGGCACATG
* * * *
1809169 CTGGGCTCGGGCAGGTGCTGGTGCCGCA-TTTTTTTCACCCGAGGCACCCTTGCCGGAGCATCGT
64 CTGGGCTCAGGCAGGTGCTGGTGCCACATTTTTTTTCACCCGAGGCACCATCGCCGGAGCATCGT
* * ** *
1809233 CGGAGAACCTGTCCAGCGACATTGGGGTTCCGGTGATTGGGGGGG-CCAGGGGGTGTGCGCGCAT
129 CGAAGAACCTGACCAGCGACATTGGGGTTCCGACGATTGGGGGGGCCCAGGGGGTGTGCGCACAT
* * *
1809297 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGA
194 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGA
*
1809362 ACTCACA-CCCCGTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
259 ACTCACATCCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
1809426 CTGAAATGGGGACAC-TTTTTGAAATGGTCACAAAATCCTGTACACTACGAGTTTTTAGCTGAA-
323 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTACAAGTTTTTAGCT-AAT
*
1809489 TTTTTTTGGGGATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
387 TTTTTTTGGGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CTT
1809554 CTGAAAAAGTTTTTAAAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAA
451 CTGAAAAA-TTTTTAAAAAATGC-CGAACCGTAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAA
* *
1809617 CGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTACGAGACCATTGTATGAATTTACAAGCCA
513 CGAGTCGTCCTGCCAGGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCA
* * *
1809682 TAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
578 TAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGAT
* * * * ** * * *
1809747 CCATGGCTTGCGCATCCCGCGTCTTTGGCCGGCATAGTGCCCACCTTCCTGCTCACTCGTTTTAT
643 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCACCCGCCCGCCCACTCGTTTCAT
1809812 CAGTTGG
708 CAGTTGG
* * *
1809819 CTTAGGCATATGTAGTTCATTCCCAGTCTATGATCAGACTAGATCGAGGGTTGTGG
1 CTTAGGCATAAG-AGTTCATTCCCAGTCTAAGATCGGACTAGA-CGAGGGTTGTGG
1809875 TAGCAGGATT
Statistics
Matches: 689, Mismatches: 72, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
713 100 0.15
714 164 0.24
715 344 0.50
716 79 0.11
717 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (714 bp):
CTTAGGCATAAGAGTTCATTCCCAGTCTAAGATCGGACTAGACGAGGGTTGTGGGGGCACATGCT
GGGCTCAGGCAGGTGCTGGTGCCACATTTTTTTTCACCCGAGGCACCATCGCCGGAGCATCGTCG
AAGAACCTGACCAGCGACATTGGGGTTCCGACGATTGGGGGGGCCCAGGGGGTGTGCGCACATGA
TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCAAGAAC
TCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTCTACACTACAAGTTTTTAGCTAATTTTT
TTTGGGCATGCCAAGAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTCTGAA
AAATTTTTAAAAAATGCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCGT
CCTGCCAGGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACGGCT
TGCGCATCCCGCCTCTCTGGCCGACATAGTGCCCACCCGCCCGCCCACTCGTTTCATCAGTTGG
Found at i:1811903 original size:8 final size:8
Alignment explanation
Indices: 1811836--1811905 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 8
1811826 TCACAGCCTC
1811836 AAAA-AAA
1 AAAATAAA
1811843 AAAA-AAA
1 AAAATAAA
*
1811850 AAAATAAT
1 AAAATAAA
*
1811858 AAGATAAACGA
1 AAAAT-AA--A
*
1811869 AAAAGAAA
1 AAAATAAA
1811877 AAAAT-AA
1 AAAATAAA
1811884 AAAAT-AA
1 AAAATAAA
1811891 AAAATAAA
1 AAAATAAA
1811899 AAAATAA
1 AAAATAA
1811906 TAACAGATAA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
7 25 0.48
8 20 0.38
9 2 0.04
10 2 0.04
11 3 0.06
ACGTcount: A:0.84, C:0.01, G:0.04, T:0.10
Consensus pattern (8 bp):
AAAATAAA
Found at i:1811921 original size:28 final size:26
Alignment explanation
Indices: 1811841--1811927 Score: 85
Period size: 27 Copynumber: 3.4 Consensus size: 26
1811831 GCCTCAAAAA
*
1811841 AAAAAAAAAAAAATAAT-AAGATAAAC
1 AAAAATAAAAAAATAATAAAGAT-AAC
*
1811867 GAAAAAGAAAAAAATAA-AAA-AT-A-
1 -AAAAATAAAAAAATAATAAAGATAAC
1811890 AAAAATAAAAAAATAATAACAGATAATC
1 AAAAATAAAAAAATAATAA-AGATAA-C
1811918 AAAAATAAAA
1 AAAAATAAAA
1811928 TAAGATAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
22 15 0.29
23 2 0.04
24 2 0.04
25 2 0.04
26 3 0.06
27 17 0.33
28 10 0.20
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (26 bp):
AAAAATAAAAAAATAATAAAGATAAC
Found at i:1811945 original size:43 final size:44
Alignment explanation
Indices: 1811874--1811981 Score: 118
Period size: 43 Copynumber: 2.5 Consensus size: 44
1811864 AACGAAAAAG
* *
1811874 AAAAAAATAAAAAATAAA-AAAT-AAAAAAATAATAAC-AGATAA
1 AAAAAAATAATAAATAAATAAATCCAAAAAAT-ATAACAAGATAA
** *
1811916 TCAAAAAT-A-AAATAAGATAAATCCAAAAAATATTACAAGATAA
1 AAAAAAATAATAAATAA-ATAAATCCAAAAAATATAACAAGATAA
1811959 AAAAAAATAATAAATAAATAAAT
1 AAAAAAATAATAAATAAATAAAT
1811982 TATAATATAA
Statistics
Matches: 54, Mismatches: 6, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
40 6 0.11
41 2 0.04
42 14 0.26
43 19 0.35
44 7 0.13
45 6 0.11
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.19
Consensus pattern (44 bp):
AAAAAAATAATAAATAAATAAATCCAAAAAATATAACAAGATAA
Found at i:1811974 original size:4 final size:4
Alignment explanation
Indices: 1811955--1812102 Score: 51
Period size: 4 Copynumber: 36.2 Consensus size: 4
1811945 ATATTACAAG
*
1811955 ATAA A-AA A-AA AT-A ATAA ATAA ATAA ATTATA ATATA AT-A ATAA ATAT
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA A-TA-A ATA-A ATAA ATAA ATAA
* * *
1812002 ATAA CTAT ATAA ATAAA ATACA TATAA ATATTA ACAA A-ACA A-AA ATAA
1 ATAA ATAA ATAA AT-AA ATA-A -ATAA ATA--A ATAA ATA-A ATAA ATAA
* * * * * *
1812050 ATAA ATAA AGAT ATAC ATAT ATTA ATAC ATAGTA AT-A ATAA ATAA AT-A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA--A ATAA ATAA ATAA ATAA
1812098 ATAA A
1 ATAA A
1812103 ATGCCTAAAA
Statistics
Matches: 111, Mismatches: 17, Indels: 32
0.69 0.11 0.20
Matches are distributed among these distances:
3 21 0.19
4 66 0.59
5 14 0.13
6 10 0.09
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.28
Consensus pattern (4 bp):
ATAA
Found at i:1812129 original size:6 final size:6
Alignment explanation
Indices: 1812118--1812143 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
1812108 TAAAATACAA
1812118 AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAAT AA
1812144 TACAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAAAT
Found at i:1812150 original size:22 final size:22
Alignment explanation
Indices: 1812109--1812153 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
1812099 TAAAATGCCT
1812109 AAAATACAAAAAAATAAAAATA
1 AAAATACAAAAAAATAAAAATA
*
1812131 AAAATA-AAAATAATACAAAATA
1 AAAATACAAAAAAATA-AAAATA
1812153 A
1 A
1812154 GAACCGAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (22 bp):
AAAATACAAAAAAATAAAAATA
Found at i:1812308 original size:7 final size:7
Alignment explanation
Indices: 1812298--1812330 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
1812288 ACATTTTCAC
1812298 TTTTTTG
1 TTTTTTG
1812305 TTTTTTG
1 TTTTTTG
1812312 TGTTTTT-
1 T-TTTTTG
1812319 TTTTTTG
1 TTTTTTG
1812326 TTTTT
1 TTTTT
1812331 GAACAAAGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 5 0.21
7 14 0.58
8 5 0.21
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:1812432 original size:41 final size:42
Alignment explanation
Indices: 1812338--1812681 Score: 468
Period size: 41 Copynumber: 8.1 Consensus size: 42
1812328 TTTGAACAAA
* *
1812338 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-AGTAAATT
*
1812381 GCTACTCTAAACAGAGGCACCACGAC-TTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
1812422 GCTCCTCTAAACAGAGGCACCACGATTTTGGAAAAG-AAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1812463 GCTCCTCTCCTCTAAACAGAGGCACCACGACTTTTGGAAAA-TAAATT
1 G-----CTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAAGTAAATT
*
1812510 GCTCCTTTAAACAGAGGCACCACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* *
1812551 GCTCCTCTAAACAAAGGCACCACAACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* *
1812592 TCTCCTCTAAACAGAGGCACCATGACTTTTGGAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAAAGTAAATT
*
1812634 GCTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1812676 GCTCCT
1 GCTCCT
1812682 TGACAAACAT
Statistics
Matches: 271, Mismatches: 17, Indels: 27
0.86 0.05 0.09
Matches are distributed among these distances:
40 4 0.01
41 119 0.44
42 83 0.31
43 26 0.10
46 24 0.09
47 15 0.06
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Done.