Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 17 of 93
Found at i:1812570 original size:129 final size:124
Alignment explanation
Indices: 1812339--1812681 Score: 494
Period size: 129 Copynumber: 2.7 Consensus size: 124
1812329 TTGAACAAAG
* * *
1812339 CTCCTCTAAACAGAGGCTCAACGAC-TTTGAGAAACATAAATTGCTACTCTAAACAGAGGCACCA
1 CTCCTCTAAACAGAGGCACCACGACTTTTG-GAAA-ATAAATTGCTCCTCTAAACAGAGGCACCA
* * *
1812403 CGAC-TTGGAAAAGTAAATTGCTCCTCTAAACAGAGGCACCACGATTTTGGAAAAG-AAATTGCT
64 CGACTTTGG-AAAGTAAATTGCTCCTCTAAACAAAGGCACCACAACTTTGG-AAAGTAAA-T--T
1812466 CCT
124 --T
*
1812469 CTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATTGCTCCTTTAAACAGAGGCACCACG
1 CTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1812534 ACTTTGGAAAGTAAATTGCTCCTCTAAACAAAGGCACCACAACTTTGGAAAGTAAATTT
66 ACTTTGGAAAGTAAATTGCTCCTCTAAACAAAGGCACCACAACTTTGGAAAGTAAATTT
*
1812593 CTCCTCTAAACAGAGGCACCATGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1 CTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
*
1812658 ACTTTTGAAAAGTAAATTGCTCCT
66 AC-TTTGGAAAGTAAATTGCTCCT
1812682 TGACAAACAT
Statistics
Matches: 199, Mismatches: 10, Indels: 13
0.90 0.05 0.06
Matches are distributed among these distances:
124 66 0.33
125 20 0.10
126 1 0.01
128 5 0.03
129 72 0.36
130 31 0.16
131 4 0.02
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (124 bp):
CTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGGAAAGTAAATTGCTCCTCTAAACAAAGGCACCACAACTTTGGAAAGTAAATTT
Found at i:1812710 original size:124 final size:124
Alignment explanation
Indices: 1812339--1812690 Score: 405
Period size: 124 Copynumber: 2.8 Consensus size: 124
1812329 TTGAACAAAG
* * *
1812339 CTCCTCTAAACAGAGGCTCAACGAC-TTTGAGAAACATAAATTGCTACTCTAAACAGAGGCACCA
1 CTCCTCTAAACAGAGGCACCACGACTTTTG-GAAA-ATAAATTGCTCCTCTAAACAGAGGCACCA
* * * *
1812403 CGACTTGGAAAAGTAAATTGCTCCTCTA-AACAGAGGCACCACGATTTTGGAAAAG-AAATTGCT
64 CGACTTTGAAAAGTAAATTGCTCCT-TACAA-ACAGCCA-CAAGA-TTTGG-AAAGTAAATT-CT
1812466 CCT
123 -CT
*
1812469 CTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATTGCTCCTTTAAACAGAGGCACCACG
1 CTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
* *
1812534 ACTTTGGAAAGTAAATTGCTCCTCTAAACAAAGGCA-CCACAA-CTTTGGAAAGTAAA-T-T-T
66 ACTTTGAAAAGTAAATTGCTCCT-T--ACAAA--CAGCCACAAGATTTGGAAAGTAAATTCTCT
*
1812593 CTCCTCTAAACAGAGGCACCATGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1 CTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
1812658 ACTTTTGAAAAGTAAATTGCTCCTTGACAAACA
66 AC-TTTGAAAAGTAAATTGCTCCTT-ACAAACA
1812691 TGTCCAAAGG
Statistics
Matches: 200, Mismatches: 14, Indels: 25
0.84 0.06 0.10
Matches are distributed among these distances:
121 2 0.01
123 5 0.03
124 67 0.34
125 20 0.10
126 1 0.00
128 5 0.03
129 60 0.30
130 27 0.14
131 8 0.04
132 4 0.02
133 1 0.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (124 bp):
CTCCTCTAAACAGAGGCACCACGACTTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACG
ACTTTGAAAAGTAAATTGCTCCTTACAAACAGCCACAAGATTTGGAAAGTAAATTCTCT
Found at i:1813720 original size:9 final size:9
Alignment explanation
Indices: 1813708--1813774 Score: 84
Period size: 9 Copynumber: 7.6 Consensus size: 9
1813698 TCTTTTTTTT
1813708 TTTTTTTCA
1 TTTTTTTCA
1813717 -TTTTTTCA
1 TTTTTTTCA
1813725 TTTTTTTCA
1 TTTTTTTCA
**
1813734 TCATTTTCA
1 TTTTTTTCA
1813743 TTTTTTTCA
1 TTTTTTTCA
1813752 TTTTTTTCA
1 TTTTTTTCA
*
1813761 CCTTTTTT-A
1 -TTTTTTTCA
1813770 TTTTT
1 TTTTT
1813775 CAAGCATAGT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
8 12 0.24
9 32 0.64
10 6 0.12
ACGTcount: A:0.12, C:0.13, G:0.00, T:0.75
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:1813903 original size:9 final size:9
Alignment explanation
Indices: 1813889--1813916 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
1813879 CACATACGGC
1813889 CCTTAACAT
1 CCTTAACAT
1813898 CCTTAACAT
1 CCTTAACAT
1813907 CCTTAACAT
1 CCTTAACAT
1813916 C
1 C
1813917 TAACTTGATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.36, G:0.00, T:0.32
Consensus pattern (9 bp):
CCTTAACAT
Found at i:1823556 original size:31 final size:31
Alignment explanation
Indices: 1823511--1823569 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
1823501 ACAGCCTCAA
1823511 AAAAAGAAAAAAAAATAATAATCAGATAAACG
1 AAAAAGAAAAAAAAATAATAA-CAGATAAACG
1823543 AAAAAG-AAAAAAAATAATAACAGATAA
1 AAAAAGAAAAAAAAATAATAACAGATAA
1823570 TCAAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
30 7 0.26
31 14 0.52
32 6 0.22
ACGTcount: A:0.75, C:0.05, G:0.08, T:0.12
Consensus pattern (31 bp):
AAAAAGAAAAAAAAATAATAACAGATAAACG
Found at i:1823611 original size:43 final size:42
Alignment explanation
Indices: 1823551--1823633 Score: 98
Period size: 43 Copynumber: 2.0 Consensus size: 42
1823541 CGAAAAAGAA
**
1823551 AAAAAATAATAACAGATAATCAA-AAATAAAATAAGATAAATCC
1 AAAAAATAATAACAGATAAAAAATAAAT-AAATAA-ATAAATCC
*
1823594 AAAAAAT-ATTACAAGATAAAAAATAAATAAATAAATAAAT
1 AAAAAATAATAAC-AGATAAAAAATAAATAAATAAATAAAT
1823634 TATAATATAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
42 10 0.29
43 21 0.60
44 4 0.11
ACGTcount: A:0.70, C:0.06, G:0.04, T:0.20
Consensus pattern (42 bp):
AAAAAATAATAACAGATAAAAAATAAATAAATAAATAAATCC
Found at i:1823662 original size:20 final size:18
Alignment explanation
Indices: 1823626--1823670 Score: 54
Period size: 20 Copynumber: 2.4 Consensus size: 18
1823616 ATAAATAAAT
1823626 AAATAAATTATAATATAA
1 AAATAAATTATAATATAA
* *
1823644 TAATAAATATGTAACTATAA
1 AAATAAAT-TATAA-TATAA
1823664 AAATAAA
1 AAATAAA
1823671 AAACATATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 4 0.18
20 11 0.50
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.31
Consensus pattern (18 bp):
AAATAAATTATAATATAA
Found at i:1823702 original size:30 final size:31
Alignment explanation
Indices: 1823646--1823703 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
1823636 TAATATAATA
* * *
1823646 ATAAATATGTAACTATAAAAATAAAAAACAT
1 ATAAATATGTAACAAAAAAAAAAAAAAACAT
1823677 ATAAATAT-TAACAAAAAAAAAAAAAAA
1 ATAAATATGTAACAAAAAAAAAAAAAAA
1823704 AAACATATAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 16 0.67
31 8 0.33
ACGTcount: A:0.72, C:0.05, G:0.02, T:0.21
Consensus pattern (31 bp):
ATAAATATGTAACAAAAAAAAAAAAAAACAT
Found at i:1825748 original size:26 final size:26
Alignment explanation
Indices: 1825712--1825764 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1825702 GTTAACATAG
* **
1825712 GCATATAGAGTTCATTTTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1825738 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1825764 G
1 G
1825765 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1826309 original size:17 final size:17
Alignment explanation
Indices: 1826287--1826320 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1826277 GAAGGCTTAA
1826287 AGGACCATTGTATGAAT
1 AGGACCATTGTATGAAT
1826304 AGGACCATTGTATGAAT
1 AGGACCATTGTATGAAT
1826321 TTACAAGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (17 bp):
AGGACCATTGTATGAAT
Found at i:1829398 original size:25 final size:26
Alignment explanation
Indices: 1829369--1829417 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
1829359 GTTGACTTAG
1829369 GCATACGGAGTTCATTCC-AGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
1829394 GCATACGGAGTTCATTCCTAGTCT
1 GCATACGGAGTTCATTCCTAGTCT
1829418 CAGATCGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:1829568 original size:22 final size:22
Alignment explanation
Indices: 1829538--1829586 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
1829528 CCGGAGGGGA
*
1829538 GTGCGCACATGATGTGCGATGG
1 GTGCTCACATGATGTGCGATGG
1829560 GTGCTCACATGATGTGCGATGG
1 GTGCTCACATGATGTGCGATGG
1829582 GTGCT
1 GTGCT
1829587 GGTACTTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.16, C:0.18, G:0.39, T:0.27
Consensus pattern (22 bp):
GTGCTCACATGATGTGCGATGG
Found at i:1831149 original size:26 final size:26
Alignment explanation
Indices: 1831120--1831172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1831110 GTTGACTTAG
1831120 GCATACGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
* *
1831146 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
1831172 G
1 G
1831173 ATCAGACCCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:1832922 original size:26 final size:26
Alignment explanation
Indices: 1832886--1832935 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1832876 GTTGACTTAG
*
1832886 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1832912 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
1832936 TAGATCGGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1836859 original size:876 final size:872
Alignment explanation
Indices: 1826939--1837220 Score: 11633
Period size: 874 Copynumber: 11.7 Consensus size: 872
1826929 AATGTTCTAT
* *
1826939 TCCCTCATCAAACCTCGAGAACTCACACCCCCGT-AAGAGCATTTGAAATTTTACAGGCGTTTGC
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-G-GTTTGC
* * *
1827003 TGCTAGGAGTAGCCATTAAAGTGTCTG-AATGCGGGATACTTTTATCAAATGGTCACCAAAATCC
64 TGC---CAGTAGCCATTAAAGTGTCTGAAATG-GGGACACTTTTTTCAAATGGTCA-CAAAATCC
* *
1827067 TGTACACTTCGAGTTTTTAGCCTGAATTTTTTGGTGCATGCCAAC-AAAATGGCAAGGATCACGT
124 TGTACACTTCGAGTTTTTAG-CTGAATTTTTTTGTGCATGCCAACAAAAAT-ACAAGGATCACGT
* * * *
1827131 CTGCCAAGTTTGGGGGCCAAAACTCCTTCTGAAAAAATTTAAAAAAAATCTCAAACCGT--AAAG
187 CTACCAAGTTT-GGGGCCAAAACTCCTTCTGAAAAAATTT-TAAAAAATCCCGAACCGTAAAAAG
* *
1827194 TTTC-AAAATCCGTGAAAAATAGGAAAC-ATGTCGTCTTGCCATGGGAAACTTTCACAAGAAGGC
250 TTTCAAAAAT-CGTGAAAAATAGAAAACGA-GTCGTCTTGCCAT--GAAAC-TTCACATGAAGGC
* * *
1827257 TT-AGGGGCCATTGCTTTG-ATTTACAAGCCCCTAAAAATGGCATTGGCATGGCAGAAATATGAA
310 TTAAGGGACCATTG-TATGAATTTACAAG-CCATAAAAATGGCATTGGCATGGCAGAAATATGAA
* * * * * *
1827320 GATATGCCTAAACCCACATGCCACCCTATCGATGCACGGCTTGCGCATCCCGCCTCTCTGGCTGG
373 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA
** ** *
1827385 CGTAGTGCCTACCCGCCCGCCTACTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
438 CGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * *
1827450 GTCTAAGATCAGACTGGACTGAGGGTTGCAGCAGTAGGATTGACAGTACGCTAAGAGGGACCCGA
503 GTCTAAGATCAGACCGGACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGG
* * * * * * * * *
1827515 CCGGTCCCCGGCTTACGCATCCTGCCCCTCTGGCCGACTGAGCGCCCGTACACTCGATTCATGGG
568 CTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGGCCGCACGCTCGTTTCGTGGG
*
1827580 TTGACTTAGGCATACGGAGTTCAGTCCCAGTCTAAGAATTCGGAGTTCATTCCCAGTCTAAGATC
633 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-A-TC-G-G---A---CC-G-----GA-C
*
1827645 GGACTGGACCAAGGGTTGCTGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-TGCATTTTT
681 ---C--G----AGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCAT--ATTTTT
* * * * * * * *
1827708 TTCACCCGGGGCACCATCGTCGGAGCATCG-CTGGAGAACCTGACCGGCAGCACT-GTGTTCTGG
735 TTCGCCCGGGGCACCATCGCCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * *
1827771 TGATTGGGGGGCCGGGGGCTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
799 CGATTGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
1827836 TGGCCCCCTC
863 TGGCCCCCTA
* *
1827846 TCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1827911 CCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
66 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* * * *
1827976 TTTGAGTTTTTAGTTGAACTTTTTTGTGCATGCCCACAAAAATACAAGGATCACGTCTACCAAGT
131 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * *
1828041 TTGGGGCTAAAACCCCTTCTAAAAAAATTTTAAAAAAATCCCGAACCATAAAAAGTTTCAAAAAT
196 TTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* * * * * *
1828106 CGTGAAAAATAAAAAACGATTCGTCTTGTCGTAAAACTTCACATGAAGGCTTAAGCGACC-TTCG
260 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT-G
* * ** * *
1828170 TATGAATTTTCAGGCCATAAAAATGGCATTGGCACAGCAGAAATATCAAGATGTGCCTAAACCCT
324 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * ** * *
1828235 CCTACCACCCTATCGATCCACGGCTTACGCGTCCTGCCTCTCTGGGCGACACAGTGCTCGCCTGC
389 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * *
1828300 CCGCCCGCTCGTTTTGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCAGACCG
454 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
** * * * * * * ** *
1828365 GACCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCTAAGGGGGACCCGACCGATCCTTGGCTTGT
519 GACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGGCTGATCCCCGGCTTGC
* * * * ** *
1828430 GCATCCTGCCCCTCTGGCTGGCTAAGTGCCCGCACGCTCAATTCGTGGGTTGTCTTAGGCATACG
584 GCATCCTGCCCCTCTGGCCGGCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * *
1828495 GAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTAC-GATGCACATACTGGGCTCGGGC
649 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
* * * * *
1828559 ATGTGCTGGTGCCACATTTTTTTCACCCGGGGTACCATCGCTGGAGCATCGTCGGAGAA-CTCGA
714 ATGTGCTGGTGTCATATTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT-GA
** * *
1828623 CCGGTGGCATTGGGGTTCCGACGATTGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATCGGT
778 CCGACGGCATTGGGGTTCCGACGATTGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * **
1828688 GCCGGTACTTGGCCTTTATATTGGGTCCCTA
842 GCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1828719 TCCCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTG
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1828784 CCGGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCCTGTACAC
66 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* * * *
1828848 TTCGAGTTTTTAGTTGAATGTTTTTTTTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAT
131 TTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *** *
1828913 TTTGGGGCCAAAAATCCTTCTGAAAATATTTTAAAAAAATTTTGAACCGTAAAAAGTTTTAAAAA
195 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
1828978 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTCAGGGACCATTG
259 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* * *
1829043 TATGAATTTACAAGCCATAAAAATGGTATTGGCAAGGTAGAAATATGAAGATGTGCCTAAACCCA
324 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * ** * * *
1829108 CCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCGATCTGGCTGGCGAAGTGCCCGCCCGC
389 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * * * *
1829173 CCGCCCACCTTCCCGCTCGTTTCATCGGTTGGCTTAGGAATATGAAGTTCATTCCCAATGTAAGA
454 CCG--------CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * * * * * * *
1829238 TCAGACCGGACTGAAGGTTGTGGCAGCAGGTTTGACAGCATGTTGAGGGGGACCTGGCCGATCCC
511 TCAGACCGGACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGGCTGATCCC
* * * * * *
1829303 CGTCTTGCGCATCCTGTCCCTCTGGCCGACTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTA
576 CGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTA
** * ** * *
1829368 GGCATACGGAGTTCATT-CCAGTCTAAGCATACGGA---GTTC-A---TTCCTAGT-CTCA-GAT
641 GGCATACGGAGTTCATTCCCAGTCTAAG-AT-CGGACCGGACCGAGGGTTGCGGGTGCACATGCT
** * ** * * * * * * * * *
1829423 CGAACTAGACCAAGGGTTAAGG-GTTCACA---TATT-GCCCGGGGCACTATCGTCGGAGCGTCA
704 -GGGCTCGGGCATGTGCT--GGTG-TCATATTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCG
* * *
1829483 CCAGAGAACCTGACCGACGGCATTGGGGTTCC-AGTGATTGGGGGGCCGGAGGGGAGTGCGCACA
765 TCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATTGGGGGG-C-----GG-G-G-G----
* *
1829547 TGATGTGCGATGGGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGACCTTATATTGGCCGC
816 -G-TGTGC-------G--CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
1829612 CTA
870 CTA
* * *
1829615 TCCCTCATCAATCCTTGAGAACTCACACCCCCTTTAAGAGCATTTGAGATTTTACAGGTTTGCTG
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
1829680 TCGGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACAC
66 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* *
1829745 TTCAAGTTTTTAGCTAAATTTTTTTGTGCATGCCCAA-AAAAATACAAGGATCACGTCTACCAAG
131 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAG
* * * **
1829809 TTTGGGGCCAAAACTCTTTCTAAAAAAAATTTTAAAAAATCTCGAAATGTAAAAAG-TT------
195 TTTGGGGCCAAAACTCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
1829867 TC------------AAA--A--------G---T-----TTCACATGAAGGCTTAAGGGGCCATTG
259 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
1829902 TATGAATTTACTAGCCATAAAAATGGCATTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCA
324 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
1829967 CCTACCACGCTATCGATCCACGGCTTGCGCATCCTGCCTCTTTGGCCGGCGTAGTGCCCGCCCGA
389 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * *
1830032 TCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
454 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * * * * *
1830097 GACCGAGGGTTGC-GACAGTAGGATCGGCAGCACTCTGAGGGGGACCCGACTGATCCCTGGCTTG
519 GACTGAGGGTTGCAG-TAGCAGGATCGACAGCACGCTGAGGGGGACCCGGCTGATCCCCGGCTTG
* *
1830161 CGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGAGTTGACTTAGGCATAC
583 CGCATCCTGCCCCTCTGGCCGGCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
1830226 GGAGTTCATTCCCAGTCTAAGCAAAAGAAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGG
648 GGAGTTCATTCCCAGTCT---------AAG---------A-TC---G----GACCGGACCGAGGG
* * * *
1830291 TTGCGGGTGCACATGCTAGGCTCGAGCATGTGCTGGTGCCGCAT-TTTTTTTCGCCCGGGCCACC
687 TTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTG--TCATATTTTTTTCGCCCGGGGCACC
* * * * * *
1830355 ATTGCCGGAGCATCGACAGATAACCTGACCGACGGCATTGGGGTTCTGGCGATTAGGGGGGTCGG
750 ATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGGGGG-CGG
* *
1830420 GGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATA
813 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1830480 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGGATTTGAGATTTTACAAGTTTGCTG
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
1830545 CTAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACAC
66 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
*
1830610 TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
131 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
1830675 TTGGGGGCAAAACTCCTTCTGAAGAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTT-TAAAAT
196 TTGGGGCCAAAACTCCTTCTGAA-AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
*
1830739 CGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
260 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* *
1830804 ATGAGTTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGAGGTGCCTAAACCCAC
325 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* * * *
1830869 CTACCATCCTATCGATCCACAGCTTGCGCATCCCGCCTCTCTAGCCGACGTAGTGCCTGCCCGCC
390 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * ** *
1830934 CGCCCGCTCGTTTCATCAGTTGGTTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACC-A
455 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * * * * *
1830998 AATGAAGGGTTACTGTAGCAGGATTGGCAGCACGTTGAGGGGGACCCGG-TCGATCCCCGGCTTA
520 ACTG-AGGGTTGCAGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGGCT-GATCCCCGGCTTG
*
1831062 CGCATCCTGCCCCTCTGGCCGGCTGAGC-GCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAC
583 CGCATCCTGCCCCTCTGGCCGGCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
*
1831126 GGAGTTCATTCCCAGCCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCCGACCGAGGG
648 GGAGTTCATTCCCAG--T---C-TA---AG---------A-TC---G----GACCGGACCGAGGG
* * * * * *
1831191 TTGCGGGTGAACAGGTTGGGCTCGGGCATGTGCTGGTATCGTATTGGTTTTT-GCCCAGGG---C
687 TTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATT--TTTTTCGCCCGGGGCACC
*
1831252 A--G-C--ATCA-C--CGGAGAACCTCG-CCGACGGCATTGGGGTTCCGACGATTGGGGGGGTCG
750 ATCGCCGGAGCATCGTCGGAGAACCT-GACCGACGGCATTGGGGTTCCGACGATT-GGGGGG-CG
* * * *
1831308 GGGGGTGTTTGTGCACATGATGTGTGATGTGTGCTGGTACTTGGCACTTATATTGGCCCCCTA
812 GGGGGTG--TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
1831371 TCCCTCATCAAACGTCGAGAACTCACACCCCTTTAAGGAGCATTTGAGATTTTACAGGTTTGCTA
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
1831436 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
66 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* * * *
1831501 TTTGAGTTTTTAGCTGAACTTTTTTGTGCATGCCCACAAAAATACAAGGATCACTTCTACCAAGT
131 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** *
1831566 TTGGGGCCAAAAAGCCTTCTGAAAAAA-TTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATC
196 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* *
1831630 GTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTATA
261 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
*
1831695 TGAATTTACAAGCCATAAAAATGGCATTGACATGGCAGAAATATGAAGATGTGCCTAAACCCACC
326 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACC
** * * *
1831760 TACCACCCTATCGATCCATTGCTAGCGCATCCCGCCTCTCCGGCCGACGTAGTGCCCGCCCACCC
391 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * * * *
1831825 GTCTGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAATATCAGACCGGA
456 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * *
1831890 CAGAAGGTTGCAGCT-GTAGGATCGGCAGCACGCTGATGGGGACCCGGCCT-ATCCCTGGCTTGC
521 CTGAGGGTTGCAG-TAGCAGGATCGACAGCACGCTGAGGGGGACCCGG-CTGATCCCCGGCTTGC
* * *
1831953 GCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACG
584 GCATCCTGCCCCTCTGGCCGGCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * * * *
1832018 AAGTTCATTCCAATTCCAAGATCGGATCGGACCGAGGGTTGCGGGTGCACATGTTGGGCTCGGGC
649 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
* * *
1832083 ATGTGCTGGTGCCGCAT-TTTTTTTCACCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTG
714 ATGTGCTGGTG--TCATATTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
* * * * *
1832147 ACCGGCGGCATTGGGGTT-CTAGCGATTGGGGGGGCGACGGGCTGTGCGCACATGATGTGTGATG
777 ACCGACGGCATTGGGGTTCCGA-CGATT-GGGGGGCG-GGGGGTGTGCGCACATGATGTGCGATG
1832211 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
839 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
1832245 TCTCTCATCAAACCTTGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTG
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
1832310 CCAGTAAG-CATTAAAGTGTCTGAAATGGGGACAC-TTTTTCGAATGGTCACAAAATCCTGTATA
66 CCAGT-AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * * *
1832373 GTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATGACGTCTACCAAG
130 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * ** ** *
1832438 TTTGGGGCAAAAAATCCTTCTGAAAAAATTAAAAAAAAATCTTGAATCGTAAAAAGTTTCAAAAA
195 TTTGGGGCCAAAACTCCTTCTGAAAAAATT-TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
1832503 TCGTGAAAAATAGAAAACGAGTCGTCTTGGCATGAAACTTCACATGAAGCCTTAAGGGACCATTG
259 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
1832568 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATAAAGATGTGCCAAAACCCA
324 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * * *
1832633 CCTACGACGCTATCGATCCACGGCTTGCGCATCCCACCCCTCTGGCC-AGCTTAGTGTCCGCCCG
389 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGA-CGTAGTGCCCGCCCG
* * * * * * *
1832697 CCCGCTCGCTCGTTTCATCGGTTGGCTTAGTCATGCGAAATTCATTCCCAGTCTAAGATCAGATC
453 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * * * * *
1832762 AGACTGAGGGTTGCGGCAGCAAGATCAACAGCACTCTGAGGGGGACCC-GATCGATCCCCGACTT
518 GGACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGGCT-GATCCCCGGCTT
* * * *
1832826 ACGCATCTTGCCCCTCTGGCCTGCTGAGCGCCCGCA-GACTCGTTTCGTGGGTTGACTTAGGCAT
582 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGGCCGCACG-CTCGTTTCGTGGGTTGACTTAGGCAT
*
1832890 ACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCATTCCCAGTCTTAGATCGGACCAGACCGAG
646 ACGGAGTTCA----T--TC----C---C--AG-TC--T---A-----AGATCGGACCGGACCGAG
* * * * * * * *
1832955 GGTTACGAGTGCACATACTGGGCTAGGGAATGTGCTGGTGCCACATTTTTTTTCACCCGGGGCAC
685 GGTTGCGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCATA-TTTTTTTCGCCCGGGGCAC
* * * * * * * * *
1833020 CAACGCCGGGGCATCGCCGGAGAACCTAAACGACGACATTGGGGTTCCAATGATTACGGGGGCCG
749 CATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT--GGGGGGCG
** * *
1833085 GGGGGTTGTAAGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCACTA
812 GGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
1833147 TCCCTCATCAATCCTTGAGAACTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
1833212 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTGTTCAAATGGTCACAAAATCCTATATAC
66 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* * * * *
1833277 TTCAATTTTTTAGCTGAATTTTTTTGTGCATGCCCATAAAAATACAAGGATCATGTCTACCAAGT
131 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * *
1833342 TTGGGGCCAAAA-TGCCTTCTCAAAAAAATTTTAAAAAATCCCAAACAGTGAAAAGATTCAAAAA
196 TTGGGGCCAAAACT-CCTTCT-GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
* *
1833406 TCGTGAAAAATAGAAAATGATTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
259 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
1833471 TAAGAATTTACAAGCCATAAAAATGGTATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
324 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* *
1833536 CCTACGACCCTATCGATCCACGGCTTGCGCATCCCGTCC-CTCTGGCCGACTTAGTGCCCGCCCG
389 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCG-CCTCTCTGGCCGACGTAGTGCCCGCCCG
* * * * *
1833600 TCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCACACT
453 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
1833665 GGACTGAGGGTTGCGGCAGCGGGATCGATAGCACGCTGAGGGGGACCCGACTGATCCCCGGCTTG
518 GGACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGGCTGATCCCCGGCTTG
* * * * *
1833730 CACATCCTGCCCCTCTGGCCGGCTAAG-TGCCTGCATGCTCATTTCGTGGGTTGACTTAGGCATA
583 CGCATCCTGCCCCTCTGGCCGGCTGAGCGGCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * **
1833794 CAGAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTATGGGTGCACATGCTGGGCTCGG
647 CGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGG
* * * * *
1833859 GCATGTGCTGGTTTCGTATTTTTTTTCGCTCGGGGCACCATCGTCGGAGCATCATCGGAGAACCT
712 GCATGTGCTGGTGTCATA-TTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCT
* * * * *
1833924 GACCGGCGGTATTAGGGTTCCGACGATTGGGGGGTGGGGGGTGTGCGCACATGATGTGCAATGGG
776 GACCGACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGG
1833989 TGCTGGTACTTGGCCCTTATATTGGCCCCCTA
841 TGCTGGTACTTGGCCCTTATATTGGCCCCCTA
1834021 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1834086 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGCTGTACAC
66 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* ** * *
1834151 TTCGAGTTTTTAGCTGAATTGTTTTGTGCATGTGAA-AAAAATTACAAGGATCATGTTTACCAAG
131 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA-TACAAGGATCACGTCTACCAAG
* * * *
1834215 TTTGGGGCCAAAACGCTTTTTGAAAAAATCTTTAAAAAATCCCGAACCGTAAAAAGTTTCTAAAA
195 TTTGGGGCCAAAACTCCTTCTGAAAAAAT-TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
1834280 TCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
259 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
* *
1834345 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTATAAATATGAAGATGTGCCTAAACCCA
324 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
** * * *
1834410 CCTATGACCCTATCGATACACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGC
389 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * * * ** **
1834475 CCACCCGTTCGTTTTGTTGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTGGATGG
454 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
** * * * ** ** * * * * *
1834540 GGTTGGGGGTTG-TGACAATAGGATCGGTAGCACGCTGAGGGGGACCCGACCGATCCTCTGCTTA
519 GACTGAGGGTTGCAG-TAGCAGGATCGACAGCACGCTGAGGGGGACCCGGCTGATCCCCGGCTTG
* * * * * *
1834604 CGCATCTTACCCCTCTGGTCGGCTGAGCGCCCACACGCTCATTTCGTGGGTTGACTTAGGCATAC
583 CGCATCCTGCCCCTCTGGCCGGCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * * * * *
1834669 AGAGTTCATTGCCAATCTAAGATCAGACCGGACTGAGGGTTACGGGTGCACATGCTGGGCTCGGG
648 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGG
* ** * ** *** * * *
1834734 CAGGTGCTGGTGTCGCATTTTTTTCGCCTGGGGTGCCATCATTGGACCATCGTCGGAAAACCAGA
713 CATGTGCTGGTGTCATATTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA
* * * * *
1834799 TCGACGGCAATGGGGTTCCGATGATTGGCGGGGGCCGGGGGGTATGCGCAGATGATGTGCGATGG
778 CCGACGGCATTGGGGTTCCGACGATT-G-GGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGG
*
1834864 GTGTTGGTACTTGGCCCTTATATTGGCCCCCTA
840 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1834897 TCCCTCATCAAACCTCTAGAACTCACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTG
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * * *
1834962 CAAGTAGCCGTTAAAGTATTTGTAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
66 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
*
1835027 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCAA-AAAAATACAAGGATCACGTCTACCAAG
131 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAG
* ** * **
1835091 TTTGGGGCCAAAACTGCTTCTG-AAAAATTTTAAAAAATCTTGAACCGTAAAGAGTTTTGAAAAT
195 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
1835155 CATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
260 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT
* * *
1835220 ATGAATTTACAAGCCATAAAAGTGGCATTGGCATGGCAAAAATATGAAGATGCGCCTAAACCCAC
325 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCAC
* *
1835285 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAACGTAGT-----------
390 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCC
* * * * ** *
1835339 -G--C-C-CGTTTCGTCGGTTGGTTTAGGCATATGGGGTTCATTCCCAGTCTATGATTGGACCAG
455 CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * ** * * *
1835399 ACTGAGGGTTGCAGCAGCAGGATCGACAGCATGCAAAGGGGGACCCGACCGATCCCCAGCTTGCG
520 ACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGGCTGATCCCCGGCTTGCG
* * * *
1835464 CATCCTGCCCTTCTGGCCGGCTGAAC-GCTCGTACGCTCGTTTCGTAGGTTGACTTAGGCATACG
585 CATCCTGCCCCTCTGGCCGGCTGAGCGGC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
1835528 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGGTGCACAAGCTGGGCTCGGGC
649 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
* * * *
1835593 ATGTGCTGGTGTGGCAT-TTTTTTTCACACAGGGCACCATCGCCGGAGCATCGTCGGAGAACTTG
714 ATGTGCTGGTGT--CATATTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTG
* * * *
1835657 ACCGACAGCATTGGGGTTCCGACGATTTGGGGGTCCGGGGGGGTGTGTGCAGATGATGTGCGATG
777 ACCGACGGCATTGGGGTTCCGACGA-TTGGGGG-GC-GGGGGGTGTGCGCACATGATGTGCGATG
1835722 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
839 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1835756 ACCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTG
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
1835821 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACAC
66 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
*
1835886 TTCGAGTTTTTAGCTGAA-CTTTTTGTGCATGCCCAA-AAAAATACAAGGATCACGTCTACCAAG
131 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAG
* * *** * *
1835949 TTTGGCGTCAAAACTCCTTCTGAAAAAATAAAAAAAAAATCTCGAATCGTAAAAAGTTTCAAAAA
195 TTTGGGGCCAAAACTCCTTCTGAAAAAAT-TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
1836014 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
259 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
1836079 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
324 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
1836144 CCTACCACCCTATCGATCCACGACTTGCGCATCGCGCCTCTCTGGCCGGCGTAGTGCCTGCCTGC
389 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * ** * * **
1836209 CCGTCCACTCAATTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCG
454 CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * *
1836274 GACTGAGGGTTACAATAGCAGGATCGACAGCACGCTGAGGGGGACTCGGCTGATCCCCGACTTGC
519 GACTGAGGGTTGCAGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGGCTGATCCCCGGCTTGC
* * *
1836339 GCATCCTGCCCCTCTGGTCGGCTGAGCGGCCGCACGCTCATTTCGTGGGTTGACTTAGGCATGCG
584 GCATCCTGCCCCTCTGGCCGGCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
* * * *
1836404 GAGTTCATTCCCAGTCTAAGATCGGAACGGACCAATGGTTGTGGGTGCACATGCTGGGCTCGGGC
649 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGC
* * * *
1836469 ATGTGCTGGTGTCATATTTTTTTCGCCCAGGGCACTATCACCGGAGCATCGTCGAAGAACCTGAC
714 ATGTGCTGGTGTCATATTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * * * ** *
1836534 CGGCAGCATTGGGGTTCTGACGATTGGGAGGGCAGGGGGTGTGCGTACATGATGTGAAATGGGTT
779 CGACGGCATTGGGGTTCCGACGATTGGG-GGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
1836599 TTGGTACTTAGCCCTTATATTTGCCCCCTA
843 CTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
1836629 TCCCTCATCAAACCTGGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
1 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
1836694 CCAGTAGCCATTAAAGTGTCTTAAAAGGGGACACTCTTTTCAAATGGTCACAAAATCCTGTACAC
66 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
* ** * *
1836759 TTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAACAATCATGTCTACCATGT
131 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * * * * *
1836824 TTGGGGCTGAAACTCCTTCTAAAAAAATTTAAAAAAATCCCAAACCATAAAATGTTTCAAAAATC
196 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
1836889 GAGGAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
261 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* *
1836954 TGAATTTACAAGCCATAAAAATGGCATTGGCATTGCAGAAATATAAAGATGTGCCTAAACCCACC
326 TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
1837019 TACCACCCTATCGATCCATGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCACCTGCCC
391 TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* *
1837084 -CCCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA
456 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * * ** * * *
1837148 CGGAGGGTTGCA-TAGCAGGATTGGCAACACGCTGAAGGGGATTCAGCCGATCCCCGGCTTGCAC
521 CTGAGGGTTGCAGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGGCTGATCCCCGGCTTGCGC
1837212 ATCCTGCCC
586 ATCCTGCCC
1837221 TCATATTGAC
Statistics
Matches: 8066, Mismatches: 1037, Indels: 580
0.83 0.11 0.06
Matches are distributed among these distances:
850 1 0.00
851 173 0.02
852 7 0.00
857 1 0.00
858 284 0.04
859 401 0.05
860 207 0.03
861 3 0.00
864 12 0.00
865 324 0.04
866 4 0.00
867 4 0.00
868 2 0.00
869 4 0.00
870 2 0.00
871 57 0.01
872 196 0.02
873 1088 0.13
874 1111 0.14
875 482 0.06
876 522 0.06
877 131 0.02
878 2 0.00
879 7 0.00
880 13 0.00
881 172 0.02
882 10 0.00
883 13 0.00
884 14 0.00
885 6 0.00
886 5 0.00
887 61 0.01
888 8 0.00
889 81 0.01
890 321 0.04
891 300 0.04
892 5 0.00
893 2 0.00
894 2 0.00
895 3 0.00
896 215 0.03
897 65 0.01
898 3 0.00
899 306 0.04
900 181 0.02
901 439 0.05
902 221 0.03
903 515 0.06
904 17 0.00
905 1 0.00
906 10 0.00
907 33 0.00
908 19 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (872 bp):
TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACAC
TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
CTGAGGGTTGCAGTAGCAGGATCGACAGCACGCTGAGGGGGACCCGGCTGATCCCCGGCTTGCGC
ATCCTGCCCCTCTGGCCGGCTGAGCGGCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCAT
GTGCTGGTGTCATATTTTTTTCGCCCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATTGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTA
Found at i:1839095 original size:9 final size:9
Alignment explanation
Indices: 1839083--1839117 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
1839073 AAAAAGGCAA
1839083 AAAAAAATG
1 AAAAAAATG
*
1839092 AAAAATGATG
1 AAAAA-AATG
1839102 AAAAAAATG
1 AAAAAAATG
1839111 AAAAAAA
1 AAAAAAA
1839118 AAAGAAGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
9 15 0.65
10 8 0.35
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AAAAAAATG
Found at i:1840246 original size:113 final size:113
Alignment explanation
Indices: 1840048--1840275 Score: 447
Period size: 113 Copynumber: 2.0 Consensus size: 113
1840038 ATGTCTTTTG
1840048 GTATCAGGGTTGATTTATAAGACCTTTAGGCATAATCTCCTGAAATTCCTTCAAACACAACTTTC
1 GTATCAGGGTTGATTTATAAGACCTTTAGGCATAATCTCCTGAAATTCCTTCAAACACAACTTTC
1840113 AACTCCTTTGGACATGTTTGTCAAGGAGCAATTTACTTTCCAAAAGTC
66 AACTCCTTTGGACATGTTTGTCAAGGAGCAATTTACTTTCCAAAAGTC
1840161 GTATCAGGGTTGATTTATAAGACCTTTAGGCATAATCTCCTGAAATTCCTTCAAACACAACTTTC
1 GTATCAGGGTTGATTTATAAGACCTTTAGGCATAATCTCCTGAAATTCCTTCAAACACAACTTTC
*
1840226 AACTCCTTTGGACATGTTTGTTAAGGAGCAATTTACTTTCCAAAAGTC
66 AACTCCTTTGGACATGTTTGTCAAGGAGCAATTTACTTTCCAAAAGTC
1840274 GT
1 GT
1840276 GGTGCCTCTG
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 114 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (113 bp):
GTATCAGGGTTGATTTATAAGACCTTTAGGCATAATCTCCTGAAATTCCTTCAAACACAACTTTC
AACTCCTTTGGACATGTTTGTCAAGGAGCAATTTACTTTCCAAAAGTC
Found at i:1840368 original size:41 final size:41
Alignment explanation
Indices: 1840249--1840422 Score: 251
Period size: 42 Copynumber: 4.1 Consensus size: 41
1840239 ATGTTTGTTA
*
1840249 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
* *
1840291 AGGAGTAATTTATTTTCCAAAAGTCGTGGTGGCTCTGTTTAG
1 AGGAGCAATTTATTTTCC-AAAGTCGTGGTGCCTCTGTTTAG
1840333 AGGAGCAATTTACTTTTCC-AAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
1840374 AGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTAT-TTTC-CAAAGTCGTGGTGCCTCTGTTTAG
1840417 AGGAGC
1 AGGAGC
1840423 TTTGGTAAAA
Statistics
Matches: 121, Mismatches: 7, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
40 1 0.01
41 37 0.31
42 51 0.42
43 32 0.26
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (41 bp):
AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:1840470 original size:11 final size:10
Alignment explanation
Indices: 1840431--1840478 Score: 53
Period size: 11 Copynumber: 4.7 Consensus size: 10
1840421 GCTTTGGTAA
1840431 AAAACAAAAAC
1 AAAA-AAAAAC
1840442 AAAAAAAAAC
1 AAAAAAAAAC
1840452 ATAAAAAAAAC
1 A-AAAAAAAAC
* *
1840463 -ACAGAAAAC
1 AAAAAAAAAC
1840472 AAAAAAA
1 AAAAAAA
1840479 TGAAAATGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
9 7 0.23
10 11 0.35
11 13 0.42
ACGTcount: A:0.83, C:0.12, G:0.02, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:1840655 original size:16 final size:15
Alignment explanation
Indices: 1840634--1840672 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
1840624 AATTCGGTTC
1840634 TTATTTTGTATTATTT
1 TTATTTT-TATTATTT
*
1840650 TTATTTTTATTTTTT
1 TTATTTTTATTATTT
1840665 TGTATTTT
1 T-TATTTT
1840673 AGGCATTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.15, C:0.00, G:0.05, T:0.79
Consensus pattern (15 bp):
TTATTTTTATTATTT
Found at i:1840692 original size:4 final size:4
Alignment explanation
Indices: 1840679--1840927 Score: 61
Period size: 4 Copynumber: 63.2 Consensus size: 4
1840669 TTTTAGGCAT
* * * * * *
1840679 TTTA -TTA TTTA TTTA -TTA TTACTA TGTA TTAA TATA TGTA TATC TTTA
1 TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA
* *
1840727 TTTA TTT- TTT- TTTG TTT- TGTTA -ATA TTTA TATGTA TTTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA T-T-TA T-TTA TTTA
* * *
1840771 TATA GTTA TATA TTTA -TTA TTATA TTATAA TTTA TTTA TTTA -TTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TT-T-A TTTA TTTA TTTA TTTA TTTA
* *
1840819 -TTA TTT- TTTA TCTTG TAATA TTT- TTTGGA TTTA TCTTA TTTTA TTT-
1 TTTA TTTA TTTA T-TTA T-TTA TTTA TTT--A TTTA T-TTA -TTTA TTTA
* * *
1840865 TTGA -TTA TCTA -TTA -TTA TTTT TATTA TTTA -TTA TTTA TTTA -TTA
1 TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA
*
1840909 TTTA TTT- TTT- TTTG TTTA T
1 TTTA TTTA TTTA TTTA TTTA T
1840928 CTGATTATTT
Statistics
Matches: 186, Mismatches: 31, Indels: 56
0.68 0.11 0.21
Matches are distributed among these distances:
3 54 0.29
4 93 0.50
5 25 0.13
6 14 0.08
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:1840796 original size:43 final size:39
Alignment explanation
Indices: 1840684--1840829 Score: 104
Period size: 41 Copynumber: 3.7 Consensus size: 39
1840674 GGCATTTTAT
* * * * *
1840684 TATTTATTTATTATTACTATGTATTAATATATGTATATCTT
1 TATTTATTTATTATTATTATTTATTATTATAT-TATA-ATG
* * *
1840725 TATTTATTT-TT-TT-TTGTTTTGTTAATAT-TTAT-ATG
1 TATTTATTTATTATTATT-ATTTATTATTATATTATAATG
*
1840760 TATTTTATTTATATAGTTATATATTTATTATTATATTATAATT
1 TA-TTTATTTAT-TA-TTAT-TATTTATTATTATATTATAATG
*
1840803 TATTTATTTATTATTATTATTTTTTAT
1 TATTTATTTATTATTATTATTTATTAT
1840830 CTTGTAATAT
Statistics
Matches: 84, Mismatches: 11, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
35 3 0.04
36 7 0.08
37 4 0.05
38 3 0.04
39 20 0.24
40 8 0.10
41 21 0.25
42 14 0.17
43 4 0.05
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.66
Consensus pattern (39 bp):
TATTTATTTATTATTATTATTTATTATTATATTATAATG
Found at i:1840805 original size:26 final size:26
Alignment explanation
Indices: 1840754--1840820 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
1840744 TGTTAATATT
*
1840754 TATATGTATT-TTATTTATATAGTTA
1 TATATTTATTATTATTTATATAGTTA
*
1840779 TATATTTATTATTATATTATA-ATTTA
1 TATATTTATTATTAT-TTATATAGTTA
*
1840805 TTTATTTATTATTATT
1 TATATTTATTATTATT
1840821 ATTTTTTATC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
25 10 0.27
26 22 0.59
27 5 0.14
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (26 bp):
TATATTTATTATTATTTATATAGTTA
Found at i:1840884 original size:43 final size:43
Alignment explanation
Indices: 1840804--1840914 Score: 106
Period size: 43 Copynumber: 2.6 Consensus size: 43
1840794 ATTATAATTT
*
1840804 ATTTATTTATTATTATTATTTTTTATCTTGTAATATTTTTTGG
1 ATTTATTTATTATTATTATTTATTATCTTGTAATATTTTTTGG
* *
1840847 ATTTATCTTATT-TTATT-TTTGATTATCTAT-TATTATTTTTAT-T
1 ATTTAT-TTATTATTATTATTT-ATTATCT-TGTAATATTTTT-TGG
1840890 ATTTA-TTATTTATTTATTATTTATT
1 ATTTATTTA-TTA-TTATTATTTATT
1840915 TTTTTTTGTT
Statistics
Matches: 57, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
41 3 0.05
42 5 0.09
43 31 0.54
44 15 0.26
45 3 0.05
ACGTcount: A:0.24, C:0.03, G:0.04, T:0.69
Consensus pattern (43 bp):
ATTTATTTATTATTATTATTTATTATCTTGTAATATTTTTTGG
Found at i:1840889 original size:26 final size:26
Alignment explanation
Indices: 1840857--1840942 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 26
1840847 ATTTATCTTA
1840857 TTTTATTTTTGATTATCTATTATTAT
1 TTTTATTTTTGATTATCTATTATTAT
*
1840883 TTTTATTATTT-ATTATTTATTTATTATT
1 TTTTATT-TTTGATTATCTA-TTATTA-T
* * *
1840911 TATTTTTTTTTGTTTATCTGATTATTTT
1 T-TTTATTTTTGATTATCT-ATTATTAT
1840939 TTTT
1 TTTT
1840943 TCTTTTTTTG
Statistics
Matches: 49, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
26 14 0.29
27 12 0.24
28 7 0.14
29 15 0.31
30 1 0.02
ACGTcount: A:0.20, C:0.02, G:0.03, T:0.74
Consensus pattern (26 bp):
TTTTATTTTTGATTATCTATTATTAT
Found at i:1841808 original size:11 final size:11
Alignment explanation
Indices: 1841777--1841822 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
1841767 CTGCTCCAGG
*
1841777 TTTTTTTTTTA
1 TTTTTTATTTA
* *
1841788 TTTGTTATTTG
1 TTTTTTATTTA
1841799 TTTTTTATTTA
1 TTTTTTATTTA
1841810 TTTTTTATTTA
1 TTTTTTATTTA
1841821 TT
1 TT
1841823 AGATTAGGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.13, C:0.00, G:0.04, T:0.83
Consensus pattern (11 bp):
TTTTTTATTTA
Found at i:1841812 original size:15 final size:15
Alignment explanation
Indices: 1841781--1841929 Score: 55
Period size: 14 Copynumber: 9.7 Consensus size: 15
1841771 TCCAGGTTTT
*
1841781 TTTTTTATTT-GTTA
1 TTTTTTATTTATTTA
1841795 TTTGTTT-TTTATTTA
1 TTT-TTTATTTATTTA
*
1841810 TTTTTTATTTATTAGA
1 TTTTTTATTTATT-TA
* *
1841826 TTAGGTTTATTTA-GTA
1 TT--TTTTATTTATTTA
1841842 TCCTTTTTACCTTTATTTTA
1 T--TTTTTA--TTTA-TTTA
1841862 TTTTATTATTTTATTT-
1 TTTT-TTA-TTTATTTA
*
1841878 TATTTTATTT-TTTA
1 TTTTTTATTTATTTA
*
1841892 TTTTTGT-TTTACTT-
1 TTTTT-TATTTATTTA
*
1841906 TTCTTTATTT-TATT-
1 TTTTTTATTTAT-TTA
1841920 TTTTTTATTT
1 TTTTTTATTT
1841930 TCACTTTTAT
Statistics
Matches: 103, Mismatches: 14, Indels: 36
0.67 0.09 0.24
Matches are distributed among these distances:
13 4 0.04
14 37 0.36
15 21 0.20
16 12 0.12
17 3 0.03
18 20 0.19
19 3 0.03
20 3 0.03
ACGTcount: A:0.17, C:0.04, G:0.05, T:0.74
Consensus pattern (15 bp):
TTTTTTATTTATTTA
Found at i:1841863 original size:5 final size:5
Alignment explanation
Indices: 1841853--1841960 Score: 97
Period size: 5 Copynumber: 22.6 Consensus size: 5
1841843 CCTTTTTACC
* *
1841853 TTTAT TTTAT TTTA- -TTAT TTTAT TTTAT TTTAT TTT-T TAT-T TTTGT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
* *
1841899 TTTACT TTT-C TTTAT TTTAT TTT-T TTTAT TTTCACT TTTAT TTTGT
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT-A-T TTTAT TTTAT
1841945 TTTA- -TTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTT
1841961 CTTTAAATAA
Statistics
Matches: 86, Mismatches: 7, Indels: 20
0.76 0.06 0.18
Matches are distributed among these distances:
3 6 0.07
4 13 0.15
5 57 0.66
6 6 0.07
7 4 0.05
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:1841874 original size:18 final size:17
Alignment explanation
Indices: 1841853--1841960 Score: 99
Period size: 18 Copynumber: 5.8 Consensus size: 17
1841843 CCTTTTTACC
1841853 TTTATTTTATTTTATTAT
1 TTTATTTTATTTTATT-T
1841871 TTTATTTTATTTTATTT
1 TTTATTTTATTTTATTT
*
1841888 TTTATTTTTGTTTTACTTTT
1 TTTA-TTTTATTTTA--TTT
*
1841908 CTTTATTTTATTTTTTTTAT
1 -TTTATTTTA-TTTTATT-T
*
1841928 TTTCACTTTTATTTTGTTT
1 TTT-A-TTTTATTTTATTT
1841947 TATTATTTTATTTT
1 T-TTATTTTATTTT
1841961 CTTTAAATAA
Statistics
Matches: 77, Mismatches: 4, Indels: 18
0.78 0.04 0.18
Matches are distributed among these distances:
17 5 0.06
18 34 0.44
19 8 0.10
20 17 0.22
21 13 0.17
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTATTTTATTTTATTT
Found at i:1841959 original size:30 final size:30
Alignment explanation
Indices: 1841853--1841961 Score: 113
Period size: 30 Copynumber: 3.7 Consensus size: 30
1841843 CCTTTTTACC
1841853 TTTATTTTATT-TTATTATTTT-A-TTTTAT
1 TTTATTTTATTATT-TTATTTTCACTTTTAT
* *
1841881 TTTATTTT-TTATTTT-TGTTTTACTTTT-C
1 TTTATTTTATTATTTTAT-TTTCACTTTTAT
*
1841909 TTTATTTTATTTTTTTTATTTTCACTTTTAT
1 TTTATTTTA-TTATTTTATTTTCACTTTTAT
*
1841940 TTTGTTTTATTATTTTATTTTC
1 TTTATTTTATTATTTTATTTTC
1841962 TTTAAATAAA
Statistics
Matches: 67, Mismatches: 6, Indels: 14
0.77 0.07 0.16
Matches are distributed among these distances:
26 1 0.01
27 7 0.10
28 19 0.28
29 4 0.06
30 27 0.40
31 9 0.13
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.78
Consensus pattern (30 bp):
TTTATTTTATTATTTTATTTTCACTTTTAT
Found at i:1842191 original size:59 final size:60
Alignment explanation
Indices: 1841976--1842499 Score: 674
Period size: 59 Copynumber: 8.7 Consensus size: 60
1841966 AATAAAAATA
* *
1841976 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAAT-AAATTTCC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
* *
1842035 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCC
1 -AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
1842096 AAAAAAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-C
1 ---AAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
*** * * *
1842158 AAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCC
*
1842219 -AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-C
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
** *
1842277 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCC
* *
1842338 AAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
1 --AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
* * * *
1842399 AAAAAATCA-ATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT-AAATTAAAGTTT-C
1 AAAAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAAATAAAATTTCC
*
1842458 -AAAAGAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
1842500 CTCCGCAAGA
Statistics
Matches: 414, Mismatches: 33, Indels: 36
0.86 0.07 0.07
Matches are distributed among these distances:
57 2 0.00
58 36 0.09
59 139 0.34
60 116 0.28
61 16 0.04
62 3 0.01
63 102 0.25
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.33
Consensus pattern (60 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
Found at i:1842195 original size:122 final size:121
Alignment explanation
Indices: 1841975--1842499 Score: 773
Period size: 122 Copynumber: 4.4 Consensus size: 121
1841965 AAATAAAAAT
*
1841975 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAAT-AAATTTCCAAAA
1 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-C-AAA
* * * *
1842039 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTTTCC
64 AAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC
*
1842096 AAAAAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAA
1 --AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAA
* *
1842161 AAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC
64 AAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC
1842219 --AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAA
1 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAA
* * *
1842282 AAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
66 AAAGATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC
*
1842338 AAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAA
1 -AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
* *
1842403 AATCA-ATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT--AAATTAAAGTTT-C
65 AA-AAGATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCT-TGAAAATCAAAGTTTCC
* *
1842458 --AAAAGAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1842500 CTCCGCAAGA
Statistics
Matches: 375, Mismatches: 20, Indels: 20
0.90 0.05 0.05
Matches are distributed among these distances:
117 40 0.11
119 115 0.31
120 1 0.00
121 10 0.03
122 141 0.38
123 62 0.17
124 6 0.02
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (121 bp):
AAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAA
AAAGATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC
Found at i:1842401 original size:241 final size:240
Alignment explanation
Indices: 1841977--1842499 Score: 838
Period size: 241 Copynumber: 2.2 Consensus size: 240
1841967 ATAAAAATAA
*
1841977 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTCCAAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAA
* * *
1842042 AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCCAAAAAAAAAAA
66 AAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCCAAAAAAAAAAA
***
1842107 TATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAGGGTTTT
131 TATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAACAATTTT
1842172 TGAGGAAAAGTTGAAAGTATCAATCTTCCT-TGAAAATCAAAGTTTCC
196 TGAGGAAAAGTTGAAAGTATCAATCTTCCTCT--AAATCAAAGTTT-C
1842219 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-C-AAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTCCAAAAAA
* *
1842282 AAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC-AAAAAAAA
65 AAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCCAAAAAAAAA
* * *
1842346 AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAATCAATT
129 AATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAACAATT
*
1842411 TTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCTAAATTAAAGTTTC
194 TTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCTAAATCAAAGTTTC
* *
1842458 AAAAGAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1842500 CTCCGCAAGA
Statistics
Matches: 263, Mismatches: 15, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
239 41 0.16
240 11 0.04
241 146 0.56
242 59 0.22
243 6 0.02
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.33
Consensus pattern (240 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAA
AAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCCAAAAAAAAAAA
TATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAACAATTTT
TGAGGAAAAGTTGAAAGTATCAATCTTCCTCTAAATCAAAGTTTC
Found at i:1843240 original size:26 final size:26
Alignment explanation
Indices: 1843188--1843240 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1843178 CTGGTCCGAT
* *
1843188 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTATGCATG
1843214 CTTAGACTGGGAATGAACTATGCATG
1 CTTAGACTGGGAATGAACTATGCATG
1843240 C
1 C
1843241 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGCATG
Found at i:1847026 original size:26 final size:26
Alignment explanation
Indices: 1846986--1847038 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1846976 CTGGTCTGAT
*
1846986 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1847012 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1847038 C
1 C
1847039 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1847207 original size:26 final size:26
Alignment explanation
Indices: 1847171--1847223 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1847161 CTGGTCTGAT
*
1847171 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1847197 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
1847223 C
1 C
1847224 CTAAGTTGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1847303 original size:185 final size:185
Alignment explanation
Indices: 1846964--1847382 Score: 536
Period size: 185 Copynumber: 2.3 Consensus size: 185
1846954 ATGTGCACCT
* * *
1846964 ACAAGCCTCGATCTGGTCTGATCTTAGACTGGTAATGAACTCCGTATGCTTAGATTGGGAATGAA
1 ACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * *
1847029 CTTCGTATGCCTAAGTCAACCCATGAAACGAGCCTGCGGGCGCTCAGCCGGCTAGAGGGGTAGCA
66 CTCCATATGCCTAAGTCAACCCATGAAACGAGCCTGCAGGAGCTCAGCCGGCCAGAGGGGCAGCA
*
1847094 TGCGTAAGCCGAGGATCAGTCGGGTCCCCCTCTGC-GA-GCTACCGATCCTACTACC
131 TGCGCAAGCCGAGGATCAGTCGGGTCCCCCTC--CAGATGCTACCGATCCTACTACC
*
1847149 GCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
1 ACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
** * * * *
1847214 CTCCATATGCCTAAGTTGACCCATGAAATGAGCGTGCAGGAGCTCAGTCGGCCAGAGGGGCAGGA
66 CTCCATATGCCTAAGTCAACCCATGAAACGAGCCTGCAGGAGCTCAGCCGGCCAGAGGGGCAGCA
* * * * * ** *
1847279 TGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCCATATGCTGCCGATCCTGTTGCC
131 TGCGCAAGCCGAGGATCAGTCGGGTCCCCCTCCAGATGCTACCGATCCTACTACC
* * * * *
1847334 ACAACCCTTGGTCTGGTCCGATCTTAGACTAGGAATGAACTTCGTATGC
1 ACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1847383 CTAGGCCAAC
Statistics
Matches: 201, Mismatches: 31, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
183 1 0.00
184 1 0.00
185 199 0.99
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
ACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCCATATGCCTAAGTCAACCCATGAAACGAGCCTGCAGGAGCTCAGCCGGCCAGAGGGGCAGCA
TGCGCAAGCCGAGGATCAGTCGGGTCCCCCTCCAGATGCTACCGATCCTACTACC
Found at i:1848099 original size:26 final size:26
Alignment explanation
Indices: 1848056--1848105 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
1848046 CCAATCTGAT
*
1848056 CTTAGACTGGTAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
1848082 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTGGGAAAGAACTCCGTA
1848106 AGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:1848279 original size:26 final size:26
Alignment explanation
Indices: 1848241--1848293 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1848231 CCAGTCTGAT
*
1848241 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
1848267 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
1848293 C
1 C
1848294 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:1848373 original size:185 final size:185
Alignment explanation
Indices: 1848045--1848445 Score: 572
Period size: 185 Copynumber: 2.2 Consensus size: 185
1848035 TAAGCCTCGA
* * * *
1848045 TCCAATCTGATCTTAGACTGGTAAAGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTAAGCC
1 TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTAAGCC
* *
1848110 TAAGTCAACCCACGAAACGAGCCTGCGGGAGCCCAACCGGCCAGAGGGGCAGGATGCGCAAGTCG
66 TAAGTCAACCCACGAAACGAGCCTGCAGGAGCCCAACCGGCAAGAGGGGCAGGATGCGCAAGTCG
** * *
1848175 AGGATCAGTCGGGTCCCCCTCTGCGTGCTACCGATCCTACTACCGCAACCCTCAG
131 AGGATCAGTCGGGTCCCCCTCCACATGCTACCGATCCTACTACCACAACCCTCAG
*
1848230 TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC-TCTGTATGC
1 TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTC-GTAAGC
* * * * *
1848294 CTAAGTCAACCCACGAAACGAGCGTGCAGGAGCTCAGCCGGTAAGAGGGGTAGGATGCGCAAG-C
65 CTAAGTCAACCCACGAAACGAGCCTGCAGGAGCCCAACCGGCAAGAGGGGCAGGATGCGCAAGTC
* * * *
1848358 TGGGGATCGGTCGGGTCCCCCTCCACATGCTGCCGATCCTGCTACCACAACCCTCAG
130 -GAGGATCAGTCGGGTCCCCCTCCACATGCTACCGATCCTACTACCACAACCCTCAG
* *
1848415 TCCGGTCCGATCTTAGACTGGGAATGAACTC
1 TCCAGTCTGATCTTAGACTGGGAATGAACTC
1848446 TATATGCCTA
Statistics
Matches: 192, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
184 3 0.02
185 189 0.98
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.20
Consensus pattern (185 bp):
TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTAAGCC
TAAGTCAACCCACGAAACGAGCCTGCAGGAGCCCAACCGGCAAGAGGGGCAGGATGCGCAAGTCG
AGGATCAGTCGGGTCCCCCTCCACATGCTACCGATCCTACTACCACAACCCTCAG
Found at i:1849176 original size:26 final size:26
Alignment explanation
Indices: 1849126--1849177 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
1849116 TGGTCCAATT
*
1849126 TTAGACTGGGAATGAACTTCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
1849152 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
1849178 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:1851297 original size:26 final size:26
Alignment explanation
Indices: 1851268--1851318 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1851258 CAATCCGATC
1851268 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCGTATGG
*
1851294 TTAGACTGGGAATGAACTCTGTATG
1 TTAGACTGGGAATGAACTCCGTATG
1851319 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:1852209 original size:26 final size:26
Alignment explanation
Indices: 1852169--1852221 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1852159 CTGGTCCAAT
*
1852169 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGAAATGAACTCTATATG
*
1852195 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTATATG
1852221 C
1 C
1852222 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTATATG
Found at i:1852266 original size:902 final size:900
Alignment explanation
Indices: 1850390--1854371 Score: 5136
Period size: 902 Copynumber: 4.4 Consensus size: 900
1850380 CCGGTCTGGT
* * * * * *
1850390 CTTAGACTAGGAATGAATTCCGTATGGCTAAGTCAACCC-CTGAAAAGATCGTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAG
* * ** * ** * * * * *
1850454 -CCGACTAGAGGGGCAGGATGCGCAAGCCGGGGATTAGCCGGGTCCCTCTTAGCGTGCTATCGAT
65 TCAG-CCAGA-GGGCAGGATGCAAAAGCCGAGGATCGGTCGGGTCCCCCTCAGCGTGCTACCAAT
* * *
1850518 -CTTCATGCTGCAGCCCTTAGTCTGGTCTGTTCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
128 CCTGC-TGCTGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * ** * * * * * *
1850582 CAACCGATGAAATGAAAGGACAGACGGGCAGGCACTACGTCGGCTAGAGAGGCAGCATGCGCAAG
192 CAACCGACGAAACGAGCGG-CGGGCGGGCGGGCACTACGTCGGCTCGAGAGGCGGGATGCGCAAG
* * * * *
1850647 CAGTCGATCGATAGCGTGATAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCA
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
1850712 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATATGAAGTTTCATGGCAAGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
1850777 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTACCAGATTTTTTAAAAATTTTT
386 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTT
* * * *
1850842 TCAGAAGGAGTTTTGGCCCCAAACTTGGAAGACGTGATCGTTGTATTTTTGTTGGCATGCACAAA
451 TCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAA
* *
1850907 AAAATTTAGCCAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
1850972 CAAACACTTTAATGGCTACTGGAAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
1851037 GTTCTCAAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
1851102 TCATGTGCACACACCCCCCCGGCCACCCCAATCGCCAGAACCCCAATTCCGCCGGTCAGGTTCTC
711 TCATGTGCACACA-CCCCCCGACCCCCCCAATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
1851167 CGATGATGATCCGACGATGGTGCCCTGGGCAAAAAAAAATGTGGTA-ACAGCACATG-CCTGAGC
775 CGGTGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATATGGCACA-AGCACATGCCCTGAGC
* ** * *
1851230 CCATCATGTGCATCCAAAACCCTTGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATG
839 CCAGCATGTGCA-CCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * *
1851293 GTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* ** ** * * * * *
1851358 CAGCCAGAGTGGTAGGATGCGCAAGTTGAGGATCGGCCAGGG-CCCCTTCAGCAT-CTATCGATC
66 CAGCCAGAG-GGCAGGATGCAAAAGCCGAGGATCGGTC-GGGTCCCCCTCAGCGTGCTACCAATC
* * * *
1851421 CTACTGCTGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCAAAGCCA
129 CTGCTGCTGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
1851486 ACCTACGAAACGAGCAGGTGGGCGGGCGGGCACTACGTCGACTCGAGAGACGGGATGAGCAAGCC
194 ACCGACGAAACGAGC-GGCGGGCGGGCGGGCACTACGTCGGCTCGAGAGGCGGGATGCGCAAGCC
* *
1851551 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACCATGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
1851616 TTTATGGCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
** * *
1851681 CTCGTTTTCTATTTTTCACGATTTTCGAAGCTTTTTACGGCTCGAGATTTTTTTAAAATTTTTTC
388 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
* * * *
1851746 AAAAAGAGTTTTGGCCCCAATCTTGGTAGACATGATCCTTGTATTTTTCTTGGCATGCATAAAAA
453 AAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
* * *
1851811 CATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
1851876 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCCA-
583 AACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT-GAG
* *
1851940 TTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
1852005 CATGTGCGCACACCCCCTCGACCCCCCCAATCGCC-GAAACCCCAATGCCGCCGGTCAGGTTCTT
712 CATGTGCACACACCCCC-CGACCCCCCCAATCGCCAG-AACCCCAATGCCGCCGGTCAGGTTCTC
* ** * * * * * *
1852069 CGGTGATGCTCTGGTGATGGTGCCCCGGGTGAAAAGAAATACGGCATAAGCACATGCTC-AAGCC
775 CGGTGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATATGGCACAAGCACATGCCCTGAGCC
* * * * * ** * *
1852133 TAGAATGTGCAGCCGTAACCCTCGATCTGGTCCAATCTTAGACTGGGAATGAACTCTATATG
840 CAGCATGTGCA-CCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
1852195 CTTAGACTGGAAATGAACTCTGTATGCCTAAGTCATCCCATGAAACAAGCGTGCGGGAGCTCAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * *
1852260 CAGCCAGAGGGGTAGGATGCAAAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCC
66 CAGCCAGA-GGGCAGGATGCAAAAGCCGAGGATCGGTCGGGTCCCCCTCAGCGTGCTACCAATCC
** * *
1852325 TGCTGCCACAACCCTTAGTTTGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCTGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * **
1852390 CCGATTAAACGA---GCGGGCAGGCGGGCACTACGTCGGCTAGAGAGGCGGGATGCGCAAAACGT
195 CCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGTCGGCTCGAGAGGCGGGATGCGCAAGCCGT
*
1852452 GGATCGATAGGGTGGTAGGTGGGTTTA-GCACATCTTCATATTTCTGCCTTGCCAATGCCATTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
*
1852516 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTGATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
*
1852581 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-AGGATTTTTTTTAAATTTTTTCA
390 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCA
* * * *
1852645 GAAGGAGTTTTGGCCCCTAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCTTGGACA-AAAA
454 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-G-CATAAAA
1852709 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
1852774 AGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGCGTGTGAG
582 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
1852839 TTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
1852904 CATGTGCGCACACCCGCCCCA-CCCCCCAATCACCAAAACCCCAATGCCGTCGGTCAGG-T-T-C
712 CATGTGCACACACCC-CCCGACCCCCCCAATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * *
1852965 -----T--T-CG-GGATGGTGCCCCGGGCGAAAAAACATGA-AGCACCAGCATATGCCC-GAGCC
776 GGTGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAT-ATGGCACAAGCACATGCCCTGAGCC
* * ** *
1853019 TAGCATGTGCCCCCGCAACCCTTGGTCCAGTTTGATCTTAGACTGGGAATGAACTCCATGTG
840 CAGCATGTG-CACCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
1853081 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * *
1853146 CGGCCAGAAGGGCAGGATGCAAAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCT
66 CAGCCAG-AGGGCAGGATGCAAAAGCCGAGGATCGGTCGGGTCCCCCTCAGCGTGCTACCAATCC
* ** *
1853211 TGCTACCACAACCCTTAGTCTGGACTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCTGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
1853276 TCGACGAAACGAGCGGACGGGTGGGCGGGCATTACGCCGGC-CAGAGAGGCGGGATGCGCAAGAC
195 CCGACGAAACGAGCGG-CGGGCGGGCGGGCACTACGTCGGCTC-GAGAGGCGGGATGCGCAAGCC
*
1853340 GTGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
258 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
* * *
1853405 TTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGTCTTCATGTGAAGTTT-AGTGGCATGACG
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA-TGGCAAGACG
* ** * *
1853469 ACTCATTTTCTATTTTTCACGATTTTGGAAACTTTTTAAGGTTCGGGATTTTTTTAAAATTTTTT
387 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTT
* * * * *
1853534 CGAAAGGAGTTTTGGCCCCAAACTTGGTAAACCTGATTCTTGTTTTTTTGTTGGCATGCATAAAA
452 CAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
* *
1853599 AAATTCAACTAAAAAATCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
1853664 AAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
1853729 TTCTCGAGG-TT--T--GGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACAA
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
1853789 CATGTGCACACACCTCCCGACCCCCCCAATCGCCAGAACCTCAATGCCGCCGGTCAGGTTCTCCG
712 CATGTGCACACACCCCCCGACCCCCCCAATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
1853854 GCGATGCTCCGACGATGGTGCCCCGGGCGAAAAAAAAATGTGGCACCAGCACAT-CCCTGAGCCC
777 GTGATGCTCCGACGATGGTGCCCCGGGCG-AAAAAAAATATGGCACAAGCACATGCCCTGAGCCC
* *
1853918 AGCATGTGCACCTGCAACCCTTGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
841 AGCATGTGCACC-GCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
1853979 CTTAGACTGGGAATGAACT-TCGTATACCTAAGTCAACCCATGAAACGAGTGTGCAGGCTCTCAG
1 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * ** * *
1854043 TCGGCCAGAGGAGCAGGATGCGCAGGCCGAGGATCGAACGGGTCTCCCTCAACGTGCTACCAATC
65 TCAGCCAGAGG-GCAGGATGCAAAAGCCGAGGATCGGTCGGGTCCCCCTCAGCGTGCTACCAATC
* * * * *
1854108 ATGCTACTGCAACCCTCT-GTCCGGTTTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
129 CTGCTGCTGCAACCCT-TAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
1854172 AACCGACGAAACGAGCGGGCGGGCGGG-GGGCACTATGTCGGC-CACAGAGGCGGGATGCGCAAG
193 AACCGACGAAACGAGC-GGCGGGCGGGCGGGCACTACGTCGGCTC-GAGAGGCGGGATGCGCAAG
* * * *** *
1854235 CCGTGGATCGATAGGGTGGTAGTTGGGCTTAGGCACATCTTCATATTTTTGTTGTACCAATGCCA
256 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * * *
1854300 TTTTTATGACATGTAAATTCA-ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCGACAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
1854364 GACTCGTT
386 GACTCGTT
1854372 NNNNNNNNNN
Statistics
Matches: 2697, Mismatches: 328, Indels: 115
0.86 0.10 0.04
Matches are distributed among these distances:
884 4 0.00
885 91 0.03
886 273 0.10
887 6 0.00
888 2 0.00
889 5 0.00
890 208 0.08
891 199 0.07
893 1 0.00
895 2 0.00
896 47 0.02
897 135 0.05
898 491 0.18
899 278 0.10
900 4 0.00
901 9 0.00
902 766 0.28
903 170 0.06
904 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CAGCCAGAGGGCAGGATGCAAAAGCCGAGGATCGGTCGGGTCCCCCTCAGCGTGCTACCAATCCT
GCTGCTGCAACCCTTAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGCGGGCGGGCGGGCACTACGTCGGCTCGAGAGGCGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCACACACCCCCCGACCCCCCCAATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA
TGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATATGGCACAAGCACATGCCCTGAGCCCAGCAT
GTGCACCGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:1853982 original size:26 final size:26
Alignment explanation
Indices: 1853953--1854003 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1853943 CTAGTCCGAT
1853953 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1853979 CTTAGACTGGGAATGAACTTCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
1854004 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1857529 original size:24 final size:24
Alignment explanation
Indices: 1857496--1857542 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
1857486 TTCTTGTTTC
*
1857496 TTCTTTGTATGAGAATCCACAATT
1 TTCTTCGTATGAGAATCCACAATT
1857520 TTCTTCGTATGAGAATCCACAAT
1 TTCTTCGTATGAGAATCCACAAT
1857543 ACTGATGCAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (24 bp):
TTCTTCGTATGAGAATCCACAATT
Found at i:1858803 original size:59 final size:58
Alignment explanation
Indices: 1858676--1859076 Score: 425
Period size: 59 Copynumber: 6.7 Consensus size: 58
1858666 CTTGCGTAGA
* * * *
1858676 GAAAATTGATACTTGCAACTTTT-CCCTAAAAATATTCTTTTGAAACTTTA-ATTTAGAG
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAAATATT-TTTTGAAAATTTATTTTTA-AG
* * * * * * *
1858734 GAAGATTGATACTTTCAACTTTTTCTCAGAAATTGATTTTTTAAAAATTTATTTTTGAG
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAAAT-ATTTTTTGAAAATTTATTTTTAAG
* *
1858793 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTTTGGAAATTTTGATTTTCAAG
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAA-ATA--TTTTTT-GAAAATTT-ATTTTTAAG
* * * * *
1858856 GAAAATTTATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTG-AAATTTTTTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAA-ATATTTTTTGAAAATTTATTTTTAAG
* *
1858914 GAAAATTGATACTTTCAACTTTTCCCC-AAAAATATTTTTTTGGAAACTTTGATTTTCAAG
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAAATA-TTTTTT-GAAAATTT-ATTTTTAAG
* * *
1858974 GAAGATTGATACTTTCAACTTTTCCTCAAAAAA-ACTTTTTTTGAAATTTTATTTTTAAG
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAAATA--TTTTTTGAAAATTTATTTTTAAG
1859033 GAAAATTGATACTTTCAACTTTTCCCCAAAAATATATTTTTTGA
1 GAAAATTGATACTTTCAACTTTTCCCCAAAAA-ATATTTTTTGA
1859077 TTTTTATTTA
Statistics
Matches: 287, Mismatches: 40, Indels: 31
0.80 0.11 0.09
Matches are distributed among these distances:
56 1 0.00
57 10 0.03
58 54 0.19
59 104 0.36
60 49 0.17
61 25 0.09
62 6 0.02
63 38 0.13
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44
Consensus pattern (58 bp):
GAAAATTGATACTTTCAACTTTTCCCCAAAAAATATTTTTTGAAAATTTATTTTTAAG
Found at i:1859100 original size:5 final size:5
Alignment explanation
Indices: 1859090--1859194 Score: 89
Period size: 5 Copynumber: 21.6 Consensus size: 5
1859080 TTATTTAAAG
* *
1859090 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAA AAAAT AAAAT AAAGA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAA-AT
* *
1859140 AAAGT AAAAC AAAA- ATAAA- AAAAT AAAAT AAAAT AAAAT -AAA- AAAAT
1 AAAAT AAAAT AAAAT A-AAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
1859187 AAAAT AAA
1 AAAAT AAA
1859195 GGTAAAAAGG
Statistics
Matches: 83, Mismatches: 7, Indels: 20
0.75 0.06 0.18
Matches are distributed among these distances:
3 3 0.04
4 10 0.12
5 64 0.77
6 2 0.02
7 4 0.05
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (5 bp):
AAAAT
Found at i:1859202 original size:18 final size:18
Alignment explanation
Indices: 1859090--1859194 Score: 108
Period size: 18 Copynumber: 5.7 Consensus size: 18
1859080 TTATTTAAAG
* *
1859090 AAAATAAAATAATAAAAC
1 AAAATAAAATAAAAAAAT
*
1859108 AAAATAAAAGT-GAAAAA-
1 AAAATAAAA-TAAAAAAAT
1859125 AAAATAAAATAAAGAAAAGT
1 AAAATAAAATAAA-AAAA-T
*
1859145 AAAACAAAAATAAAAAAAT
1 AAAA-TAAAATAAAAAAAT
1859164 AAAATAAAATAAAATAAA-
1 AAAATAAAATAAAA-AAAT
1859182 AAAATAAAATAAA
1 AAAATAAAATAAA
1859195 GGTAAAAAGG
Statistics
Matches: 75, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
16 1 0.01
17 10 0.13
18 39 0.52
19 9 0.12
20 8 0.11
21 8 0.11
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (18 bp):
AAAATAAAATAAAAAAAT
Found at i:1859756 original size:19 final size:19
Alignment explanation
Indices: 1859734--1859771 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1859724 TGGTCGAAAT
1859734 TTTCACCGAAAAATGCAAC
1 TTTCACCGAAAAATGCAAC
* *
1859753 TTTCACTGAAAAATTCAAC
1 TTTCACCGAAAAATGCAAC
1859772 CGGAATCTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (19 bp):
TTTCACCGAAAAATGCAAC
Found at i:1860182 original size:43 final size:42
Alignment explanation
Indices: 1860135--1860217 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 42
1860125 AACGAAAAGG
1860135 AAAAAAAATTA-ACAGATAATTAAAAAT-A-AAATAAGATAAATCC
1 AAAAAAAATTACA-AGATAA--AAAAATAATAAATAA-ATAAATCC
*
1860178 AAAAAATATTACAAGATAAAAAAATAATAAATAAATAAAT
1 AAAAAAAATTACAAGATAAAAAAATAATAAATAAATAAAT
1860218 TATAATATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
41 6 0.17
42 7 0.19
43 22 0.61
44 1 0.03
ACGTcount: A:0.70, C:0.05, G:0.04, T:0.22
Consensus pattern (42 bp):
AAAAAAAATTACAAGATAAAAAAATAATAAATAAATAAATCC
Found at i:1860358 original size:15 final size:15
Alignment explanation
Indices: 1860338--1860378 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
1860328 TAAAATGCCT
1860338 AAAATACAAAAGAAA
1 AAAATACAAAAGAAA
*
1860353 AAAATA-AAAATAAA
1 AAAATACAAAAGAAA
1860367 AATAATACAAAA
1 AA-AATACAAAA
1860379 TAAGAACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 9 0.39
15 10 0.43
16 4 0.17
ACGTcount: A:0.80, C:0.05, G:0.02, T:0.12
Consensus pattern (15 bp):
AAAATACAAAAGAAA
Found at i:1861054 original size:26 final size:26
Alignment explanation
Indices: 1861025--1861077 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1861015 GTTGACTTAG
1861025 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1861051 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1861077 G
1 G
1861078 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1863001 original size:874 final size:871
Alignment explanation
Indices: 1861051--1863435 Score: 3537
Period size: 874 Copynumber: 2.7 Consensus size: 871
1861041 CCCAGTCTAA
* *
1861051 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGGTGCACATACTGGG
* * * *
1861116 CTCGGGCATGTGCTGGTGCCATATTTTTTTCGCCCGAGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTTTCACCC-AGGCACCATCATCGGAGCATCGTTGGAGA
* * ** *
1861181 ACCTGACCGACGGCACTGGAGTTCCGGTGATTGGGGGGCCGGGGGGTGCATGCACATGATGTGTG
130 ACCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
* *
1861246 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCATAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * **
1861311 CCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTACCCATTAAAGTGTCTGAAATAT
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
1861376 GGATACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGTTGAACTCTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
* * *
1861441 CATGCCCAA-AAAAATACAAGGATCCCATCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAA
390 CATG-CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * *
1861505 TTTT-AAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 TTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
1861569 GCCATGAAACTTCACATGAAGGCTTAAGAGACCATTTTATGAATTTACATGCCATAAAAATGGCA
519 GCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
1861634 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATTCACGGCTTGC
584 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
1861699 GCATCCAACATATCTGGTCGGCATAGTGCCCACCTACCGCCTGCTCATTTCGTCGGCTGGCTTAG
649 GCATCCAACATATCTGGCCGACATAGTGCCCACCCACCGCCCGCTCATTTCGTCGGCTGGCTTAG
* * * *
1861764 GCATACAGAGTTCATTCCAGTCTAAGATCAGATCAGACTGAGGGTTACGACAGCAGGATCGATAG
714 GCATACAGAGTTCATTCAAGTCTAAGATCAGAACAGAATGAGGGTTACGACAGCAAGATCGATAG
* * * *
1861829 CATGCTGAGGGGGACCCGACCGATCCCCGGCTTGCGTATCTTGCCCCTTTGGCCGGCTGAGCGCC
779 CACGCTGAGGAGGACCCGACCGATCCCCGGCTTGCGTATCCTGCCCCTCTGGCCGGCTGAGCGCC
*
1861894 CGCACGCTCATTTCGTGGGTTGACTTAG
844 CGCACGCTCATTTCGTAGGTTGACTTAG
* * *
1861922 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAAGTGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGGTGCACATACTGGG
* * ***
1861987 CTCGGGCATGTCCTGGTGCCGTATTTTTTTCTCTTGGGGCACCATCATCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTTTCAC-CCAGGCACCATCATCGGAGCATCGTTGGAGA
*
1862052 ACCTGACCGACGGCATTGGGGTTCCGATGATTGGGGGGCCGGGGGG-GTGTGCACACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGGCCGGGGGGTGTGTG--CACATGATGTG
* * *
1862116 CGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTTATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
1862181 ACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTACCAGTAGCTATAAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
1862246 GGGGACACGTTTTTCAAATGGTCACAAAAT-CTGGTACAGTTTGAGTTTTTAGCTGAATTTGTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCCT-GTACACTTTGAGTTTTTAGCTGAATTT-TTT
* * * *
1862310 TTTGCATGCAAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
*
1862375 AAATTTTAAAAAAATCCCCAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
451 AAATTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
1862440 CTTGCCATGAAACTTCACATGAAGGCCTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATG
*
1862505 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGGCT
581 GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
1862570 TGCGCATCCCATC-TTTCTGGCCGACGTAGTGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGG
646 TGCGCAT-CCAACATATCTGGCCGACATAGTGCCCACCCACC-GCCCGCTCATTTCGTCGGCTGG
* * * * * * *
1862634 CTTAGGCATACGGAGTTCATTCTAAGTCTATGAT-TGAACTGGAATGATGGTTACGGCAGTAAGA
709 CTTAGGCATACAGAGTTCATTC-AAGTCTAAGATCAGAAC-AGAATGAGGGTTACGACAGCAAGA
* ** * * *
1862698 TCGGTAGCACGCTGAGGAGGACCCGGTCGATCCTCGGCTTGCGTATCCTGCCTCTCTGGCTGGCT
772 TCGATAGCACGCTGAGGAGGACCCGACCGATCCCCGGCTTGCGTATCCTGCCCCTCTGGCCGGCT
* **
1862763 GAGCGCCCGCACGTTTGTTTCGTAGGTTGACTTAG
837 GAGCGCCCGCACGCTCATTTCGTAGGTTGACTTAG
** * *
1862798 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGTGGGTGCGCATATTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGGTGCACATACTGGG
* *
1862863 CTCGAGCATGTGCTGGTGTCGTATTTTTTTCACCCAGGACACCATCATCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGTATTTTTTTCACCCAGG-CACCATCATCGGAGCATCGTTGGAGA
* * * *
1862928 ACCTGACCGGCAGCATTGGGGTTCCGGTGATTAGGGGGCCGGGGGGTGTGTGCACGTGAT-TGCG
130 ACCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
1862992 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
1863057 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
1863122 GGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGTA-TTTTTAACTGAATTTTTTTGT
325 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTG-AGTTTTTAGCTGAATTTTTTTGT
* * * * *
1863186 GCATACCTACAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACCCCCTCTGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* *
1863251 -TTTAAAAAAATTCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
454 TTTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
1863315 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
1863380 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
584 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
1863436 TTAGTGAACT
Statistics
Matches: 1359, Mismatches: 140, Indels: 29
0.89 0.09 0.02
Matches are distributed among these distances:
870 3 0.00
871 161 0.12
872 360 0.26
873 126 0.09
874 377 0.28
875 59 0.04
876 268 0.20
877 5 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (871 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCAGGTGCACATACTGGG
CTCGGGCATGTGCTGGTGCCGTATTTTTTTCACCCAGGCACCATCATCGGAGCATCGTTGGAGAA
CCTGACCGACGGCATTGGGGTTCCGGTGATTGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
TTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCAACATATCTGGCCGACATAGTGCCCACCCACCGCCCGCTCATTTCGTCGGCTGGCTTAGGC
ATACAGAGTTCATTCAAGTCTAAGATCAGAACAGAATGAGGGTTACGACAGCAAGATCGATAGCA
CGCTGAGGAGGACCCGACCGATCCCCGGCTTGCGTATCCTGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCATTTCGTAGGTTGACTTAG
Found at i:1866234 original size:26 final size:26
Alignment explanation
Indices: 1866198--1866250 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
1866188 GTTGACTTAG
1866198 GCATACGGAGTTCATTCCCAA-TCTAA
1 GCATACGGAGTTCATT-CCAAGTCTAA
1866224 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
1866250 G
1 G
1866251 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:1867134 original size:26 final size:26
Alignment explanation
Indices: 1867098--1867150 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1867088 GTTGACTTAG
1867098 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1867124 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1867150 G
1 G
1867151 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1868689 original size:185 final size:185
Alignment explanation
Indices: 1868377--1868793 Score: 595
Period size: 185 Copynumber: 2.3 Consensus size: 185
1868367 GTTGGCTTGG
* ** * * * * ** * *
1868377 GCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTGC-GATAACAAGATCGGT
1 GCATACAGAGTTCATTCCCACTCTAAGATCAGACCAGACCGAGGGTTACAG-CAGTAGGATCGGC
* *
1868441 AGCACACAGAGGGGGACCCAACCGATCCCCTGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCG
65 AGCACACAGAGGGGGACCCAACCGATCCCCTGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCG
* *
1868506 CTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
*
1868562 GCATACATAGTTCATTCCCACTCTAAGATCAGACCAGACCGAGGGTTACAGCAGTAGGATCGGCA
1 GCATACAGAGTTCATTCCCACTCTAAGATCAGACCAGACCGAGGGTTACAGCAGTAGGATCGGCA
* *
1868627 GCACACAGAGGGGGACCCGATCGAT-CCCTGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCG
66 GCACACAGAGGGGGACCCAACCGATCCCCT-GCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCG
* *
1868691 CCCGCACGCTCGTTTCGTGGTTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* **
1868747 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTT
1 GCATACAGAGTTCATTCCCACTCTAAGATCAGACCAGACCGAGGGTT
1868794 GCGGGTGCAC
Statistics
Matches: 206, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
184 4 0.02
185 201 0.98
186 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.26, T:0.23
Consensus pattern (185 bp):
GCATACAGAGTTCATTCCCACTCTAAGATCAGACCAGACCGAGGGTTACAGCAGTAGGATCGGCA
GCACACAGAGGGGGACCCAACCGATCCCCTGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:1868757 original size:26 final size:26
Alignment explanation
Indices: 1868721--1868773 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1868711 TTTGACTTAG
*
1868721 GCATATAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1868747 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1868773 G
1 G
1868774 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1869723 original size:159 final size:159
Alignment explanation
Indices: 1869434--1869821 Score: 429
Period size: 159 Copynumber: 2.4 Consensus size: 159
1869424 CCTATCGGCT
* * * ** *
1869434 CGTTTTGTCGGTTGGCTTAGGCATACGGATTTCATTCCCAGTCTAATATCAGACCAAACCAAGGG
1 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
* * * * *
1869499 TTGCAGCAGCAAAATTGGTAGCACACAGAGGGGGACCCGATCGATCCTCGACTTACGCATCCTGC
66 TTGCAGCAGCAAAATCGGCACCACACAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCTGC
* * * *
1869564 CCCTCTGGCCGGTTGAGCGCCCGCCCACA
131 CCCTCTGGCCAGCTGAGCACCCGCACACA
* *
1869593 CGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGG
1 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
** * ** * *
1869658 TTGTGGTAGCAGGATCGGCACCACGCTA-AGGGGGACCCGACCGGTCCCC-AGCTTACGCATCCT
66 TTGCAGCAGCAAAATCGGCACCACAC-AGAGGGGGACCCGACCGATCCCCGA-CTTACGCATCCT
* ** *
1869721 GCCCCTCTGGCCAGCTGAGCACTCGCATGCT
129 GCCCCTCTGGCCAGCTGAGCACCCGCACACA
* * ** * *
1869752 CATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTTCCCAATCAAAGATCAGACCGGACCGAGG
1 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA-TTCCCAGTCTAAGATCAGACCGGACCGAGG
1869817 GTTGC
65 GTTGC
1869822 GGGTGCACAT
Statistics
Matches: 189, Mismatches: 37, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
158 1 0.01
159 156 0.83
160 32 0.17
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (159 bp):
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG
TTGCAGCAGCAAAATCGGCACCACACAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCTGC
CCCTCTGGCCAGCTGAGCACCCGCACACA
Found at i:1870686 original size:26 final size:26
Alignment explanation
Indices: 1870650--1870702 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1870640 GTTGACTTAG
1870650 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
1870676 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1870702 G
1 G
1870703 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1871578 original size:26 final size:26
Alignment explanation
Indices: 1871542--1871594 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1871532 GTTGACTTAG
*
1871542 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
1871568 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1871594 G
1 G
1871595 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1871662 original size:891 final size:890
Alignment explanation
Indices: 1869772--1879042 Score: 10086
Period size: 898 Copynumber: 10.4 Consensus size: 890
1869762 GTTAACTTAG
* * * ** * *
1869772 GCATACGGAGTTCATTTCCCAATCAAAGATCAGACCGGACCGAGGGTTGCGGGTGCACATGCTAG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGGTGCACATGCTGG
* * *** *
1869837 GCTCGGGCATTTGCTGGTGCCGTATTTTTTTTCGCTCGGGGCACCATCGTTGGAGCATCGTCGGA
65 GCTCGAGCATGTGCTGGTGCTACATTTTTTTTCGC-CCGGG-A-CA-C-------CATCGTCGGA
* * **
1869902 GAACCTGACCGGCGGCATTGTGGTTCCGATGATTGGGGGGGCCGGGGGAGGTGTGCAG-ACATGA
119 GAACTTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGG-CGGGGG-GGTGTGC-GCACATGA
* *** *
1869966 TGTGCGATGGGTGCTCCAAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
181 TGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
1870031 TCACCCCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
246 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
1870096 AAATGGGGACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGTTGAATTCT
311 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
1870161 TTTGAGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTATGA
376 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * ** * * *
1870226 AAATAGTTTAAAAAAATCCTAAACAGTAAAAAGTTTCAAAAATCTTAAAAAATAGAAAACGAGTC
441 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTC
*
1870291 ATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
505 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * * *
1870356 TGGCATTGGCATGGTAGAAATATAAAGATGTGCCTAAACCCACCTACTACCCCATCGATCCACGG
570 TGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
1870421 CTTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCGCC-CGCCCGCCCGCTTGTTTCGTCTGTT
635 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCC-CCTCGCCCGCCCGCTCGTTTCATCAGTT
* * *
1870485 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACC-AGACCAAGGGTTGCAGCAGTAG
699 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCAAGGGTTGCGGCAGCAG
* * ** * ** * *
1870549 GATTGGCAGCACATTGA-AGGGACCCGACCGATCCCCGGCTTGCGCATCCTGGCCCTCTGGCCGG
763 GATCGGTAGCACGCTGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGG
* * *
1870613 CT--ACGCACCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
828 CTGAACG--CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
1870676 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGAGTTACGGGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * * * **
1870741 CTCGGGCATGTGCTGGTG-TCGCATTTTTTTTCGCTCGAGCCACCATCGTCGGAGAATTTGATTG
66 CTCGAGCATGTGCTGGTGCT-ACATTTTTTTTCGCCCGGGACACCATCGTCGGAGAACTTGACCG
*
1870805 GCGGCATTGGGGTTCCGACGATTGGGGGGGCGGGTGGGGTGTGCGCACATGATGTGCGATTGGTG
130 GCGGCATTGGGGTTCCGGCGATTGGGGGGGCGGG-GGGGTGTGCGCACATGATGTGCGATTGGTG
* ** **
1870870 CTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCATGCCCCCTTA
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
1870935 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATAGGGACACT
259 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
1871000 TTTTTCAATTGGTCAAAAAATCCTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
1871065 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAAATCCTGT-TGAAAAAATTTTAAA
389 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCTGAAAAAATTTT-AA
* * * * *
1871129 AAAAATCCCAAACCTTAAAAAGTATCAAAATTCGTGAAAAATAGAAAACGAGTCGTGTCGCCATG
452 AAAAATCCCGAACCGTAAAAAGTTTCAAAA-TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * * *
1871194 AAACTTCACATGATGGCTTAAAGGACCATTGT-TGAATTTACATGTCATAAAAATGGCATTCGCA
516 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
1871258 CGGCAAAAATATGAAGATGTGCCTAAGCCCAACTACCACCCTATCGATCCACGGCTTGCGCATCC
581 CGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * *
1871323 CGCCTCTGTGGCCGACGTAGTGCCCCCTCGCCCGCCCATTCGTTTCGTCGGTTGGCTTAGGCATA
646 CGCCTCTCTGGCCGGCGTAGTGCCCCCTCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATA
* * * * * *
1871388 CAGAGTTCATTCCCAGTCTAAGATTAGACCGAACCAATGGTTGCGGCAACAAGATCGGTAGCATG
711 CGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATCGGTAGCACG
* * *
1871453 CTGAGGGGGACCCGGTCGATCCCCGACTTGCGTATCCTGCCCCTCTGGCTGGCTGAACGCCCGTA
776 CTGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAACGCCCGCA
* * *
1871518 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
841 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
1871568 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACTGGATCGAA-GGTTGCGGGTGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGA-CCAAGGGTTGCGGGTGCACATGCTGG
* * * *
1871632 GCTCGAGCATTTGCCGGTGCTGCATTTTTTTTCGCCCGAGG-CACCATCG-CTGGAGCATCGTTG
65 GCTCGAGCATGTGCTGGTGCTACATTTTTTTTCGCCCG-GGACACCATCGTC-GGAG-AAC-TTG
* * * *
1871695 AAAACCTGACCGACGGCATTGGGGTTCTGGTGATTGGGGGGTGCCGGGGGGTGTGCACACATGAT
126 ---ACC-G---G-CGGCATTGGGGTTCCGGCGATTGGGGGG-GCGGGGGGGTGTGCGCACATGAT
* * * * *
1871760 TTGCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
182 GTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
1871825 CACACCCACTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAA
247 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
1871890 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATATTT
312 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
1871955 TTGTGCATGCCAACAAAAATACAAGGATCACATCTAACAAG-TTGAGGGCCAAAACTCCTTCTGA
377 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGCCAAAACTCCTTCTGA
* * * *
1872019 AAAAATTTTAAAAAAATCCCGCACCGTAAAAAGTTTTAAAAATTGT-AAAAAGTAGAAAATGAGT
441 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCGTGAAAAA-TAGAAAACGAGT
* *
1872083 CATCCTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
504 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
1872148 ATGGCATTGTCACAGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACG
569 ATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *** * *
1872213 GCTTGCGCATCTCGTCTCTCTGGTCGGCATAGTGTCTGGC-CGCCCGCCTGCTCATTTCATCAGT
634 GCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTG-CCCCCTCGCCCGCCCGCTCGTTTCATCAGT
* * * * *
1872277 TGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTAGACCGAA-CAGAGGGTTGCAGTAGTA
698 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCA-AGGGTTGCGGCAGCA
* ** ** * *
1872341 GGATCAGTAGCATACTGAGGGGGACCCGACCGATCCCCTG-CTTACGCATCCTGCCCCTCTGGTC
762 GGATCGGTAGCACGCTGAGGGGGACCCGGTCGATCCCC-GACTTGCGCATCCTGCCCCTCTGGCC
* * * *
1872405 GGCTGAGCGCCCGCACACTCGTTTCGTGGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAA
826 GGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
1872470 G-AT-C---G---A-----A--C-----T-GGACT-G----AGGGTTGCAGGTGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGGTGCACATGCTGGG
* *
1872509 CTCGGGCATGTGCTGGTG-T-CGTATTTTTTTTCGCCTGTGGCACCATGTCCGGAGCATCGTCGG
66 CTCGAGCATGTGCTGGTGCTAC--ATTTTTTTTCGCCCG-GG-A-CA----C----CATCGTCGG
** * ** * * *
1872572 AGAACTTGACCGGCGGCATTGGGGTTCCGATGGTTGGGGGAGGCCAGGGGGTGAGCACACAAGAT
118 AGAACTTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGG-GGCGGGGGGGTGTGCGCACATGAT
*
1872637 GTGCGATGGGTGCTGGTACTTGG-CC----A-T-------TA----T-AT------T-G-G----
182 GTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
1872672 ----CCCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTTTTA
247 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
1872733 AATTGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTTT
312 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
1872798 TTGTGCATACCAAAAAAAATACAAGGATCATGTCTACCAAGGTTGGGGCCTAAACTCCTTCTGAA
377 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * **
1872863 AAAA-TTTCAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCAAGAAAAATAGAAAACGAGTCG
442 AAAATTTTAAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTCG
*
1872927 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT-TGAATTTACAAGCTATAAAAAT
506 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
1872991 GGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
571 GGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
1873056 TTGCGCATCCTGCCTCTCTGGCCGGCGGAATGCCCGCTTGCCCGCCCGCTCGTTTCATCAATTGG
636 TTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCCCTCGCCCGCCCGCTCGTTTCATCAGTTGG
* * * * * * *
1873121 CTTAGGCGTACGGAGTTCATTCCTAGTCTAAGATCAAACCGGA-CAGAGGGTTGTGGCAACATGA
701 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCA-AGGGTTGCGGCAGCAGGA
* * * * * *
1873185 TTGGTAGCACGTTGAGGGAGACCCGGTCGATCCTCGACCTGCGCATCCTGCTCCTCTGGCCGGCT
765 TCGGTAGCACGCTGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCT
* ** * *
1873250 TAGA-GCTTGCACACTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
830 GA-ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* *
1873311 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCAAGGGTTGCAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * *
1873376 CTC-AGGGATGTGCTGGTGCCACATTTTTTTTTGCCCGGGACACCATCGTCGGAGCATCGTTGGA
66 CTCGA-GCATGTGCTGGTGCTACATTTTTTTTCGCCCGGGACACCA---TC---G--TC---GGA
* * * * *
1873440 GAACCTGACCGGCGGCATTGGAGTTCTGGCGATTGGGGGGGTC-GGGGGGTGTGTGCACATGTTG
119 GAACTTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGG-CGGGGGGGTGTGCGCACATGATG
* *
1873504 TGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCTCATAT--C-C--CAAACCTCGAGAACTC
183 TGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
1873564 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1873629 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTA-CTTGAATTTTT
313 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC-TGAATTTTT
* * * * *
1873693 TTATGCATGCCAAAAAAAAAACAAGGATCAGGTCTACCAAGTTTGGGCCCAAAACTCCTTCTAAA
377 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* **
1873758 AAAATTTTTAAAAAATCTTGAACCGTAAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTC
442 AAAATTTTAAAAAAATCCCGAACCGT-AAAAAGTTT-CAAAATCGTGAAAAATAGAAAACGAGTC
*
1873823 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT-TGAATTTACAAGCTATAAAAA
505 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
1873887 TGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGG
570 TGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
1873952 CTTGCGCATCCTGCCTCTCTGGCCGGCGGAATGCCCGCTTGCCCGCCCGCTCGTTTCATCAATTG
635 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCCCTCGCCCGCCCGCTCGTTTCATCAGTTG
* * * * * * *
1874017 GCTTAGGCGTACGGAGTTCATTCCTAGTCTAAGATCAAACCGGA-CAGAGGGTTGTTGGCAACAT
700 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCA-AGGGTTG-CGGCAGCAG
* * * * * *
1874081 GATTGGTAGCACGTTGA-GGAGACCCGGTCGATCCTCGACCTGCGCATTCCTGCTCCTCTGGCCG
763 GATCGGTAGCACGCTGAGGGGGACCCGGTCGATCCCCGACTTGCGCA-TCCTGCCCCTCTGGCCG
* ** * *
1874145 GCTTAGA-GCTTGCACACTCGTTTTGTGGGTTGACTTAGGCATGACAGAGTTTCATTCCCAGTCT
827 GCTGA-ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT-ACAGAG-TTCATTCCCAGTCT
1874209 AA
889 AA
* *
1874211 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCAAGGGTTGCAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * *
1874276 CTC-AGGATGTGCT-GTGCCACATTTTTTTTTGCCCGGGACACCATCGTCGGAGCATCGTTGGAG
66 CTCGAGCATGTGCTGGTGCTACATTTTTTTTCGCCCGGGACACCA---TC---G--TC---GGAG
* * * * *
1874339 AACCTGACCGGCGGCATTGGAGTTCTGGCGATTGGGGGGGTC--GGGGGTGTGTGCACATGTTGT
120 AACTTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGG-CGGGGGGGTGTGCGCACATGATGT
* *
1874402 GCGATTTGGTGCTGGTACTTGGCCCTTATATTGGCCTCATAT--C-C--CAAACCTCGAGAACTC
184 GCGA-TTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
1874462 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAG-AGCCATTAAAGTGTCTGAA
248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1874526 ATGGGGACAC-TTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTA-CTTGAATTTTT
313 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC-TGAATTTTT
* * * *
1874589 TTATGCATGCCAAAAAAAA-ACAAGGATCAGGTCTACCCAAGTTTGGGCCCAAAAACTCCTTCTA
377 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTA-CCAAGTTTGGGGCC-AAAACTCCTTCTG
* **
1874653 AAAAAATTTTTTAAAAAATCTTGAACCGTTAAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACG
440 AAAAAA-TTTTAAAAAAATCCCGAACCG-T-AAAAAGTTT-CAAAATCGTGAAAAATAGAAAACG
*
1874718 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGT-TGAATTTACAAGCTATA
501 AGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
1874782 AAAATGGCATTGGCACGGCAGAAAATATGAAGATGTGCCTTAAACCCACCTACCACCCTATCGAT
566 AAAATGGCATTGGCACGGCAG-AAATATGAAGATGTGCC-TAAACCCACCTACCACCCTATCGAT
* * * * * *
1874847 CCATGGCTTGCGCATCCTGCCTCTCTGGCCGGCGGAATGCCCGCTTGCCCGCCCGCTCGTTTCAT
629 CCACGGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCCCCTCGCCCGCCCGCTCGTTTCAT
* * * * * *
1874912 CA-ATGGCTTAGGCGTACGGAGTTCATTCCTAGTCTAAGATCAAACCGGA-CAGAGGGTTGTGGC
694 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCA-AGGGTTGCGGC
* * * * * * * *
1874975 AACATGATTGGTAGCACGTTGAGGGAGACCCGGTCGATCCTCGACCTGCGCATCCTGCTCCTCTG
758 AGCAGGATCGGTAGCACGCTGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTG
* ** * *
1875040 GCCGGCTTAGA-GCTTGCACACTCGTTTTGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
823 GCCGGCTGA-ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT
1875104 CTAA
887 CTAA
* *
1875108 GCATACGGAGTTCATTCCCAATCTAAGATCGGACTAGACCAAGGGTTGCAGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * *
1875173 CTC-AGGGATGTGCTGGTGCCACATTTTTTTTTGCCCGGGACACCATCGTCGGAGCATCGTTGGA
66 CTCGA-GCATGTGCTGGTGCTACATTTTTTTTCGCCCGGGACACCA---TC---G--TC---GGA
* * * * *
1875237 GAACCTGACCGGCGGCATTGGAGTTCTGGCGATTGGGGGGGTC-GGGGGGTGTGTGCACATGTTG
119 GAACTTGACCGGCGGCATTGGGGTTCCGGCGATTGGGGGGG-CGGGGGGGTGTGCGCACATGATG
* *
1875301 TGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCTCATAT--C-C--CAAACCTCGAGAACTC
183 TGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
1875361 ACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
248 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
1875426 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACCTCGAGTTTTTA-CTTGAATTTTT
313 ATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGC-TGAATTTTT
* * * * *
1875490 TTATGCATGCCAAAAAAAAAACAAGGATCAGGTCTACCAAGTTTGGGCCCAAAACTCCTTCTAAA
377 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* **
1875555 AAAATTTTTAAAAAATCTTGAACCGTAAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTC
442 AAAATTTTAAAAAAATCCCGAACCGT-AAAAAGTTT-CAAAATCGTGAAAAATAGAAAACGAGTC
* *
1875620 GTCATGCCACT-AAACTTCACATGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAA
505 GTCTTGCCA-TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
1875684 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTAT-GAATCCAC
569 ATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCAC
* * * * * *
1875748 GTCTTGCGCATCCCGCCTCTCTGGCCGGTGTAGTGCCCGCC-CACCCGTCCGCTCATTTCGTC-G
633 GGCTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCCC-CCTCGCCCGCCCGCTCGTTTCATCAG
** * * *
1875811 ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTACGGTAGC
697 -TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGC
* * * * * * *
1875876 AGGATCGGCAGCATGCTGAGGGGGACCC-GACAGATCCCCGGCATGCGTATCCTACCCCTCTGGC
761 AGGATCGGTAGCACGCTGAGGGGGACCCGGTC-GATCCCCGACTTGCGCATCCTGCCCCTCTGGC
* * * ** *
1875940 TGGCTGAACGCCCGTACGTTCGTTTTATGGGCTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
825 CGGCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTA
1876005 A
890 A
* * * *
1876006 GCACACGGAGTTCATTCCCAGTCTAAGATC-GAATCAGACCAAGGGTTACGGGTGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-AGACCAAGGGTTGCGGGTGCACATGCTGG
* * * * * *
1876070 GCTCGGGCATATGCTGGTGCCT-CATGTTTTTTT-GCCCGGGGCACCATC-CCGAAGAACCTGAC
65 GCTCGAGCATGTGCTGGTG-CTACAT-TTTTTTTCGCCCGGGACACCATCGTCGGAGAACTTGAC
* * * * *
1876132 CGGCGGCATTGGGGTTTCGGTGATT-GGAGGGCGGGGCGAGTGTGCGCACATGATGTGCGATGGG
128 CGGCGGCATTGGGGTTCCGGCGATTGGGGGGGCGGGG-GGGTGTGCGCACATGATGTGCGATTGG
*
1876196 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACGCCCT
192 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
1876261 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
257 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
1876326 CTTTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCATGC
322 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
1876391 CAACAAAAATACAAGGATCACGTCTACCAAGTTAGGGG-AAAAACTCCTTCTGAAAAAATTTTTA
387 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAA
* * * *
1876455 AAAAATCCTGAATCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATC
452 AAAAATCCCGAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
1876520 AAACTTCACATGAAGGCTTAAGGGACCAATGTATGAAATTACAAGCCATAAAAATGGCATTGGCA
516 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * ** * *
1876585 AGGCAAAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATTGATCCACGTTTTACGCATCT
581 CGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * *
1876650 CGCCTCTCTAGCCGACGTAGTG---CC-CGCCTGTCCGCTCGTTTAATCGGTTGGCTTAGGCATA
646 CGCCTCTCTGGCCGGCGTAGTGCCCCCTCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATA
* * * * *
1876711 CAGAGTTCATTCCCAGTCTAAGATCAGACC-AGACTAAGGGTTGTGGCAGCAGGATTGGCAGCAC
711 CGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCAAGGGTTGCGGCAGCAGGATCGGTAGCAC
** * * ** * * * *
1876775 GGAGAGGGGGACCCGATCGATCCCTGACTTTTGCATCCTGCCCTTCTGACCGGCTGAGCTCCCGC
775 GCTGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAACGCCCGC
* * *
1876840 ACGCTTGTTTCGTGGGTTGACTTAGGCACACAGAGTTCATTGCCAGTCTAA
840 ACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * ** * * **
1876891 GCATACGAAGTTCATTCCCATTCT---A--GG-CTCGAGC-A-TG-TGCTTGTGC-CGT-AT-TT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGGTGCACATGCTGGG
*** * * * * * * * *
1876944 CT-TTTCA---CCCGGGGC-ACCA-------TCGCCAGAG-CATCA-C--CGAAGAACCTGACCG
66 CTCGAGCATGTGCTGGTGCTA-CATTTTTTTTCGCCCGGGACACCATCGTCGGAGAACTTGACCG
* ** * * *
1876993 GCGGCATTGGGGTTTCAACGATTGGGGGGGTCGAGGGGGTGTGCGCACATGATGTGTGATGGGTG
130 GCGGCATTGGGGTTCCGGCGATTGGGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATTGGTG
*
1877058 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA-TGGACACCCCCTT
194 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT-CACACCCCCTT
* *
1877122 AGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAC
258 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
1877187 TTTTTTCAAATGGTCACAAAATCCTCTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCC
323 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
1877252 AAGAAAAATACAAGGATCATGTCTACCAAGTTCGGGGCCAAAACTCTTTCTGAAAAAATTTTAAA
388 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * *
1877317 AAAATCTCGAGCCGTAAAAAGCTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
453 AAAATCCCGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
1877382 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAAATGGCATTGGCA
517 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCA
* * * *
1877447 TGGTAGAAATAAGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCC
581 CGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * ** *
1877512 CGCCTCTCGGGCCGACGTAGTG-CCCGTCCGCCCACCCGCTCATTTTGT-AGGTTGGCTTTGGCA
646 CGCCTCTCTGGCCGGCGTAGTGCCCCCT-CGCCCGCCCGCTCGTTTCATCA-GTTGGCTTAGGCA
* * * ** * * *
1877575 TACGGAGTTCAATCCCAGTCTAAGATCGGACCAAACTGAGGGTTACGGCAGTAGGATCGATAG-A
709 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATCGGTAGCA
* * ** * * * * * * * *
1877639 TGCTGAGGGGGCCCCGACCGATCCTCGGCTTTCGCATCCTACCACTCTGGCTGGCTTAGCGCCCG
774 CGCTGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAACGCCCG
*
1877704 CACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
839 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * ** *
1877756 ACATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTTTGGATGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * ** *
1877821 CTCAAGCATGTGCTGGTGCCACATTTTTTTTCGTCTAGGGCACCATCGCCGGATCATCACCGGAG
66 CTCGAGCATGTGCTGGTGCTACATTTTTTTTCG-CCCGGG-A-CA---CC--ATCGT---CGGAG
* * * * *
1877886 AACCTGACCGGCGGAATTAGGGTTCTGGCGATTGGGGTGGCCGGAGGGGGGTGTGCGCACATGAT
120 AACTTGACCGGCGGCATTGGGGTTCCGGCGATTGGGG-GGGC-G-GGGGGGTGTGCGCACATGAT
* *
1877951 GTGCGA-TGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAAC
182 GTGCGATTGG-TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
1878015 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTTCCAGTAGCCATTAAAGTGTCTA
246 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
1878080 AAATGGGGACACTTTTTTCAAATGGTTACAAAATCCTGTACACTTCGAGTTTTTGGCTAAATTTT
311 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* *
1878145 TTTGTGCATGCCAACAAAAATACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
376 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* * *
1878210 AAAAATTTTAAAAAAATCTCGTACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
441 AAAAATTTTAAAAAAATCCCGAACCGTAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTC
1878275 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
505 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1878340 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCGACTG
570 TGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * * * * *
1878405 CTTGCGCATGCTGTCTCTCTGGTCGGCGTAGTGCCTGCC-CGTCTGTCCGTTTGTTTCGTCAGTT
635 CTTGCGCATCCCGCCTCTCTGGCCGGCGTAGTGCC-CCCTCGCCCGCCCGCTCGTTTCATCAGTT
** * * * * *
1878469 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAGAGACC-AGACTAAGGGCTGCAGTAGCAA
699 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCAAGGGTTGCGGCAGCAG
** * * * * * * * *
1878533 GATCGACAGCACGCTAAGAGGGACCCGG-CTAATCCTCGGCTTGCGCATCTTGCCCCTCTAGTCG
763 GATCGGTAGCACGCTGAGGGGGACCCGGTC-GATCCCCGACTTGCGCATCCTGCCCCTCTGGCCG
** * *
1878597 GCTGAGTGCCCGCACGATCATTTCGTGGGTTGACTTA-GC---C--A--T-A----C-G-----
827 GCTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
1878642 G---A---A-TTCATTCCTAGTCTAAGACCAGACTGGACCGAGGGTTGCGGGTGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGGTGCACATGCTGGG
* * * * * *
1878700 CTCGGGCATATGCTGGTG-TCATATTTTTTTTTGCTCGGGGCACCATTGTCAGAGCATCGCCGAA
66 CTCGAGCATGTGCTGGTGCT-ACATTTTTTTTCGCCCGGGACACCA---TC---G--TCG--G-A
* * * * * * * * *
1878764 GAACCTGATCGACGGAATTGGGGTTTCGGCGATTGGAGGGGCCGACGAGGGTGTGCGAACATGAT
119 GAACTTGACCGGCGGCATTGGGGTTCCGGCGATTGG-GGGGGCG-GGGGGGTGTGCGCACATGAT
* * * * *
1878829 GTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATTAAACATCGAGAACT
182 GTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
1878894 CACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATCGCCATTAAAGTGTCTGA
247 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
1878959 AATGGGGACACATTTTTCAAATGGTCACAAAATCCTATACACTTCGAGTTTTTAGCTGAA-TGTT
312 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
1879023 TTGTGCATGCCCACAAAAAT
377 TTGTGCATGCCAAAAAAAAT
1879043 CTCGAACCAT
Statistics
Matches: 7367, Mismatches: 742, Indels: 543
0.85 0.09 0.06
Matches are distributed among these distances:
840 4 0.00
841 286 0.04
842 89 0.01
843 182 0.02
844 3 0.00
846 1 0.00
849 1 0.00
851 1 0.00
852 1 0.00
853 1 0.00
854 1 0.00
856 3 0.00
859 40 0.01
860 255 0.03
861 133 0.02
862 101 0.01
863 1 0.00
864 7 0.00
865 120 0.02
866 117 0.02
867 91 0.01
868 2 0.00
869 7 0.00
870 1 0.00
871 7 0.00
872 5 0.00
873 5 0.00
874 8 0.00
875 6 0.00
876 63 0.01
877 89 0.01
878 199 0.03
879 118 0.02
880 5 0.00
881 14 0.00
882 6 0.00
883 2 0.00
884 1 0.00
885 208 0.03
886 91 0.01
887 11 0.00
888 6 0.00
889 185 0.03
890 45 0.01
891 641 0.09
892 326 0.04
893 6 0.00
894 8 0.00
895 197 0.03
896 109 0.01
897 550 0.07
898 651 0.09
899 482 0.07
900 267 0.04
901 261 0.04
902 597 0.08
903 118 0.02
904 186 0.03
905 442 0.06
906 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTAGACCAAGGGTTGCGGGTGCACATGCTGGG
CTCGAGCATGTGCTGGTGCTACATTTTTTTTCGCCCGGGACACCATCGTCGGAGAACTTGACCGG
CGGCATTGGGGTTCCGGCGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATTGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
ATCCCGAACCGTAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
CTCTGGCCGGCGTAGTGCCCCCTCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGAACCAAGGGTTGCGGCAGCAGGATCGGTAGCACGCTGAG
GGGGACCCGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTC
GTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:1873321 original size:26 final size:26
Alignment explanation
Indices: 1873285--1873337 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1873275 GTTGACTTAG
*
1873285 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
1873311 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1873337 G
1 G
1873338 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1875118 original size:26 final size:26
Alignment explanation
Indices: 1875082--1875134 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1875072 GTTGACTTAG
*
1875082 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
1875108 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
1875134 G
1 G
1875135 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:1877761 original size:26 final size:26
Alignment explanation
Indices: 1877731--1877781 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1877721 TTGACTTAGG
1877731 CATACAGAGTTCATTCCCAGTCTAAA
1 CATACAGAGTTCATTCCCAGTCTAAA
*
1877757 CATACGGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAGTCTAA
1877782 GATCAGACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAGTCTAAA
Found at i:1879899 original size:26 final size:26
Alignment explanation
Indices: 1879869--1879920 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
1879859 GTTGACTTAG
1879869 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1879895 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
1879921 AATCGGACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:1880789 original size:26 final size:26
Alignment explanation
Indices: 1880753--1880805 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1880743 GTTAACTTAG
*
1880753 GCATATGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
1880779 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1880805 G
1 G
1880806 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1880923 original size:185 final size:185
Alignment explanation
Indices: 1880594--1880999 Score: 539
Period size: 185 Copynumber: 2.2 Consensus size: 185
1880584 GTTGGCCTAG
* * * * * *
1880594 GCATACGGAGTTCATTCCCAGTCTAAGATTGAACCGAAGTGTGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAATAGGATCGGCA
* * *
1880659 GCATGAGGAAGGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCCTCTCTTACCGGCTGAGCTC
66 GCACGAGGAAGGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGACCGGCTGAGCTC
* * * *
1880724 CTGCTCGTTCGTTTCGTGGGTTAACTTAGGCATATGGAGTTCATTCCCAATCTAA
131 CCGCACGCTCGTTTCGTGGGTTAACTTAGGCATATGAAGTTCATTCCCAATCTAA
*
1880779 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-AGACTGAGGGTTGCGGTAATAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGA-ACTGAGGGTTGCGGCAATAGGATCGGC
* * * * * *
1880843 AGCACGCA-GAGGGGGGCCCGA-CTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGGG
65 AGCACG-AGGAAGGGGACCCGATC-GATCCCCAGCTTGCGCATCCTGCCCCTCTGACCGGCTGAG
* * * *
1880906 CTCCCGCAGGCTCGTTTCGTGGGTTGACTTAGGGATATGAAGTTCATTCCCAGTCTAA
128 CTCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATATGAAGTTCATTCCCAATCTAA
*
1880964 GCATACGGAGTTCATTACCAGTCTAAGATCGGACCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCG
1881000 GATCAAGGCT
Statistics
Matches: 192, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
184 2 0.01
185 189 0.98
186 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.24
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACTGAGGGTTGCGGCAATAGGATCGGCA
GCACGAGGAAGGGGACCCGATCGATCCCCAGCTTGCGCATCCTGCCCCTCTGACCGGCTGAGCTC
CCGCACGCTCGTTTCGTGGGTTAACTTAGGCATATGAAGTTCATTCCCAATCTAA
Found at i:1881855 original size:26 final size:26
Alignment explanation
Indices: 1881821--1881873 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1881811 GTTGACTTAG
* *
1881821 GCATGTGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
1881847 GCATATGGAGTTCATCCCCAGTCTAA
1 GCATATGGAGTTCATCCCCAGTCTAA
1881873 G
1 G
1881874 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATATGGAGTTCATCCCCAGTCTAA
Found at i:1881989 original size:185 final size:184
Alignment explanation
Indices: 1881662--1882060 Score: 530
Period size: 185 Copynumber: 2.2 Consensus size: 184
1881652 GTTGGCCTAG
* * * *
1881662 GCATACGAAGTTCATTCCCAGTCTAAGATCATACCGGACTGAGGGTTGTGGCAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGGCA
* * * **
1881727 GCATGCTGAGAGGGACCCGACCGATCCCCAGCTTGAGCATCCTGCCCCTCTGGCCGGCTGAGCTC
66 GCA-GCAGAGAGGGACCCAACCGATCCCCAGCTTGAGCATCCTACCCCTCTGGCCAACTGAGCTC
* * ****
1881792 CTGCACGCTCGTTTCATGGGTTGACTTAGGCATGTGGAGTTCATTCCCAGTCTAA
130 CCGCACGCTCGTTTCATGGGTTGACATAGGCATACAAAGTTCATTCCCAGTCTAA
* * * *
1881847 GCATATGGAGTTCATCCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGGCA
* * * *
1881912 GGTCA-CAGAGGGGGACCCAACTGATCCCCTGCTTGCGCATCCTACCCCTCTGGCCAACTGAGCT
66 -G-CAGCAGAGAGGGACCCAACCGATCCCCAGCTTGAGCATCCTACCCCTCTGGCCAACTGAGCT
* *
1881976 CCCGCAGGCTCGTTTCGTGGGTTGACATAGGCATACAAAGTTCATTCCCAGTCTAA
129 CCCGCACGCTCGTTTCATGGGTTGACATAGGCATACAAAGTTCATTCCCAGTCTAA
*
1882032 GCATACGGAGTTCATTACCAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
1882061 TGGACTAGAT
Statistics
Matches: 184, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
185 181 0.98
186 1 0.01
187 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.24
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGTAGGATCGGCA
GCAGCAGAGAGGGACCCAACCGATCCCCAGCTTGAGCATCCTACCCCTCTGGCCAACTGAGCTCC
CGCACGCTCGTTTCATGGGTTGACATAGGCATACAAAGTTCATTCCCAGTCTAA
Found at i:1882924 original size:26 final size:26
Alignment explanation
Indices: 1882888--1882940 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1882878 GTTGACTTAG
1882888 GCATACGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
*
1882914 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
1882940 G
1 G
1882941 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:1883822 original size:26 final size:26
Alignment explanation
Indices: 1883792--1883844 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
1883782 GTTGACTTAG
1883792 GCATAC-GAGGTTCATTCCCAATCTAA
1 GCATACGGA-GTTCATTCCCAATCTAA
* *
1883818 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
1883844 G
1 G
1883845 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:1884533 original size:902 final size:897
Alignment explanation
Indices: 1881847--1885824 Score: 5366
Period size: 904 Copynumber: 4.5 Consensus size: 897
1881837 CCCAGTCTAA
* * * * *
1881847 GCATATGGAGTTCATCCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGTAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GTAGCAGGATCGGCA
** * * ** * * * ** *
1881912 GGTCACAGAGGGGGACCCAACTGATCCCCTGCTTGCGCATCCTACCCCTCTGGCCAACTGAGCTC
65 GCACGCTGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* * *
1881977 CCGCAGGCTCGTTTCGTGGGTTGACATAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
1882042 TTCATTACCAGTCTAAGATTGGACTAGATCGAGGCTTGCGGGAGCACATGCTGGGCTCGGGCATG
194 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATG
1882107 TGCTGGTGTCGTATTTTTTTTTCG-CTCGGGGCACCATCGCC---G-A-----AGAACCTGACCG
259 TGCTGGTGTCGTATTTTTTTTTCGCCT-GGGGCACCATCGCCGGAGCATCCGGAGAACCTGACCG
* * *
1882162 ACGGCATTGGGG-TTCTGGCGATTGGGGGGGCGGGGGGTGTGCGCACATTATGTACGATGGGTGC
323 ACGGCATTGGGGTTTC-GGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* **
1882226 TGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCTTTTAA
387 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
1882291 AGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
452 AGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
1882356 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAG--TTT---T---TTTTTTTGTGCATGCCAA
517 TTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
1882413 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAAATCCTTCTGAAAAAATTTTTAAAAA
582 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAA
* *
1882478 ATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAG
647 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * *
1882543 TTCACATGAAGGCCTAAGGAACCATTGTATCAATCTACAAGCCATGAAAATGGCATTGGCATGGC
712 TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGC
*
1882608 AGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
777 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCC
* *
1882673 TCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
842 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGTTTGGCTTAG
* * * * * *
1882729 GCATACGGAGTTCATTCCCATTCTAAGATTAGACCAAACCGAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTG-CGTAGCAGGATCGGCA
* * * *
1882794 GCATGCTGAGGGGGACCCGACCGATCCCCAGCTTGCACATCTTGCCCCTCTGGCCGGCTGAGCGC
65 GCACGCTGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
* *
1882859 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCACTCCCAGTCTAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-GTTCATTCCCAGTCTAAGCATACGGAG
* * * *
1882924 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGTTTGCGGGTGCACATGCTGGGCTTGGGCATG
194 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATG
* ** * *
1882989 TGCTGGTGTTGTATTTTTTTTTCGCCCAGGGCACCATCACCGGAGCATCACCGGAGAACCTGACG
259 TGCTGGTGTCGTATTTTTTTTTCGCCTGGGGCACCATCGCCGGAGCAT--CCGGAGAACCTGACC
* * * * * *
1883054 GACGACATTGGGGTTTCGGTGATTGGGGGGGCCAGGGGGTATGTGCGCATAGGATGTGTGATGGG
322 GACGGCATTGGGGTTTCGGCGATT-GGGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGATGGG
* **
1883119 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCTTT
384 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
1883184 TAAAGAGCATTTGAGATTTTATAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
449 TAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
1883249 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAAGTTTTTTGTGCATGC
514 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
1883314 CAACAAAAATACAAGGATCACGTTTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
579 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * * *
1883379 AAAATC-CTGAACCGTTAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTCCCATG
644 AAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
1883443 AAACTTCACATGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGAA
708 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* ** *
1883508 TGGAAGAAATATGAAGATGTGCCTAAACCCACCTACTGCCCTATCGATCCATGGCTTGCGCATCC
773 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
1883573 CGCTTCTCTAGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCATCGTTTGGCTTAG
838 CGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGTTTGGCTTAG
* * * * *
1883633 GCATACGGAGTTCATTCACAGTCTAAGATCAGACTAGACTGAGGGTTGCAGTAGCCA-GATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC-GTAG-CAGGATCGGC
* * * ** *** * *
1883697 AGCATG-TAGAGGAGGACCTGGTTGATCCTTGGCTTGTGCATCCTGCCCCTCTGGTCGGCTGAGC
64 AGCACGCT-GAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* * * *
1883761 GCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACGAGGTTCATTCCCAATCTAAGCATATGG
128 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-AGGTTCATTCCCAGTCTAAGCATACGG
** * *
1883826 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGATTGCACGTGCTGGGCTCGAGCA
192 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCA
* * *
1883891 TGTGCTGATGTCGTA-TTTTTTTTCGCCTGTGGCACCATCGCTGGAGCATCGTCGGAGAACCTGA
257 TGTGCTGGTGTCGTATTTTTTTTTCGCCTGGGGCACCATCGCCGGAGCATC--CGGAGAACCTGA
** * *
1883955 CCGGTGGCATTGGGGTTTCGGCGATTGCGGGGGCCGGGGGGTGTGGGCACATGATGTGTGATGGG
320 CCGACGGCATTGGGGTTTCGGCGATTG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
1884020 TGCTGGTACTTGGCCCTTATATTGGACCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCC
384 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
1884085 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAGTAAAGTGTTTGAAATGGGGACA
449 TAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
** *
1884150 CTTTTTTCAAATGGTCACAAAATCCTGTATGCTTCGAGTTTTTAGCTGAATTTTTTTGTTCATGC
514 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
1884215 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAACTCCTTCTGAAAAAATTTTAA
579 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG-GCCAAAACTCCTTCTGAAAAAATTTTAA
*
1884280 AAAAATCTCGAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
643 AAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
1884345 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
708 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
1884410 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACTACCCTATCGATCTACGGCTTGCGCATCC
773 TGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** *
1884475 CGCCTCTTTGGCCGACGTAGTGCCCGCCC-CCTCGCCCATTCATTTCGTCGTTTGGCTTAG
838 CGCCTCTCTGGCCGACGTAGTGCCCGCCCGCC-CGCCCGCTCGTTTCGTCGTTTGGCTTAG
* * * ** *
1884535 GGATATGGAGTTCACTCCCAGTCTAAGATCAGACCA-AATGAAGGGTTGCGATAGCAGGATTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCG-AGGGTTGCG-TAGCAGGATCGGC
* *
1884599 AGCACGCTGAGGGGGACCCGGCCAATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGTG
64 AGCACGCTGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
*
1884664 CCCGCACGCTCGTTCCGTGGGTTGAC-T-----T--A-G----------G-C---G--TACGGAG
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
1884704 TTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGGTGCACATGCTGGGCTTGAGCATG
194 TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATG
* * * *
1884769 TGCTGGTGCCGCATTTTTTTTTCGCCCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
259 TGCTGGTGTCGTATTTTTTTTTCGCCTGGGGCACCATCGCCGGAGCATC--CGGAGAACCTGACC
*
1884834 GACGGCATT-GGGTTCCGGCGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
322 GACGGCATTGGGGTTTCGGCGATT-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
1884898 CTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
386 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
1884963 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACT
451 AAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
1885028 TTTTTCAAATGGTCACAAAATCTTGTACGCTTCTAGTTTTTAGCTGAATTTTTTTGTTCATGCCA
516 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
1885093 AAAAAAATATAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAA
581 AAAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
* *
1885158 AAATCTCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAA
645 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
1885223 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCATG
710 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
1885288 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACACACTATTGATCCACGGCTTGCGCATCC
775 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCAC-C-CTATCGATCCACGGCTTGCGCATCC
* * *
1885353 CGCCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTTGTTTCGTCAG-TTGGCTTAG
838 CGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTC-GTTTGGCTTAG
* * * * * **
1885413 GCATACTGAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAATAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG-TAGCAGGATCGGCA
* * * * *
1885478 GCACGCTGAGGGGGACCCAGTCGATCCCC-GACTTGCGCATCTTGCCCCTCTAGCCGGTTGAGCG
65 GCACGCTGAGGGGGACCCGGCCGATCCCCAG-CTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* ** * *
1885542 CCTGCACGCTCGTTTTATGAGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAAGCATACGGA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-GTTCATTCCCAGTCTAAGCATACGGA
*
1885607 GTTCATT-CCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCAT
193 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCAT
* * **
1885671 GTGGTGGTGCCACA-TTTTTTTTCGCCTGGGGCACCAT---C---GC-T--GGAGAACCTGACCG
258 GTGCTGGTGTCGTATTTTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCCGGAGAACCTGACCG
** * *
1885726 ACGATATTAGGGTTTCGGCGATTGGGGGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
323 ACGGCATTGGGGTTTCGGCGATTGGGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
1885791 TGATACTTGGCCCTTATATTGGCCCCCTATCCCT
387 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
1885825 GTCATAATAT
Statistics
Matches: 2740, Mismatches: 278, Indels: 146
0.87 0.09 0.05
Matches are distributed among these distances:
876 531 0.19
877 60 0.02
878 198 0.07
879 5 0.00
881 1 0.00
882 256 0.09
883 1 0.00
884 1 0.00
885 1 0.00
886 2 0.00
888 1 0.00
891 27 0.01
892 79 0.03
893 29 0.01
894 10 0.00
895 6 0.00
896 188 0.07
898 4 0.00
899 2 0.00
901 247 0.09
902 408 0.15
903 139 0.05
904 541 0.20
905 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGTAGCAGGATCGGCAG
CACGCTGAGGGGGACCCGGCCGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGGTTCATTCCCAGTCTAAGCATACGGAGTT
CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGGTGCACATGCTGGGCTCGGGCATGTG
CTGGTGTCGTATTTTTTTTTCGCCTGGGGCACCATCGCCGGAGCATCCGGAGAACCTGACCGACG
GCATTGGGGTTTCGGCGATTGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
AATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCT
CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGTTTGGCTTAG
Found at i:1886621 original size:19 final size:19
Alignment explanation
Indices: 1886593--1886630 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1886583 CAGCCAAAAT
*
1886593 TTTCGTCGAAAAATGCAAC
1 TTTCGCCGAAAAATGCAAC
*
1886612 TTTCGCCGAAAAATTCAAC
1 TTTCGCCGAAAAATGCAAC
1886631 CGAAATCTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.37, C:0.24, G:0.13, T:0.26
Consensus pattern (19 bp):
TTTCGCCGAAAAATGCAAC
Found at i:1890059 original size:865 final size:866
Alignment explanation
Indices: 1888775--1894033 Score: 6727
Period size: 866 Copynumber: 6.0 Consensus size: 866
1888765 TAAGCATAAA
** * * * * *
1888775 GAGTTCATTCCCAGTCTAAGATCGGACTGGA-TCAAGGGTTGCGGGTGCACATGTTGGGCTCGAG
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTCGAGGGTTGCGAGTGCACATGCTAGGCTCGGG
* * * * * *
1888839 CATGTGCTGGAGCCGCATTTGTTTTCGCTCGGGGCACCATCG-CTGGAGAACCTGATCGG-GGTA
66 CATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTC-GGAGAACCTGACCGGTGGCA
* * * * * *
1888902 TTGGGGTTTCGGA-GATTGGAGGGGCCGGGGGGTATGCGCACATGATTTGCGATAGGTGCTGGTA
130 TTGGGG-TTCCGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
1888966 CTTAGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGC
194 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
1889031 ATTTGAGACTTTACCGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* * * *
1889096 AAATGATCACAAAATCCTATACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCCACAAAA
324 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
1889161 ATACAAGGATCGCGA-ATACCAGGTTTAGGGCCAAAACTCCTTCTGAAAAAA-TTTAAAAAAA-C
389 ATACAAGGATCAC-ATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
*
1889223 CTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
453 C-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
* * * *
1889288 CACATAAAGGCTTAAGGGACCGTTGT-TGAATTTACAAGCCATAAAAATGGCATTGGCACGGTAG
517 CACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAG
* ** * * *** *
1889352 AAATATGAAGACGTAACTAAACCCACCTAACACCCTATC-ATTCAATTACTTACGCATCCCGCCT
582 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA-TCCACGGCTTGCGCATCCCGCCT
* * *
1889416 CTCTGGCCGACCTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAG
646 CTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAG
* *
1889481 TTCATTCCCAGTCTAAGATCAGACTAGACCAAGGGTTGCGACAGCAGGATTGACAGCACGCTGAG
711 TTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATTGACAGCACACTGAG
** * * * * * * *
1889546 GGGGACCCGATCGATCCTCGACTTGTGTATCTTACCCCTTTGGCCGGCTGAGTGCCCGCACGCTC
776 GGGGACCCGGCCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
1889611 GTTTCATGGGTTGACTTAGGCATACG
841 GTTTCATGGGTTGACTTAGGCATACG
* * *
1889637 GAGTTCATTCCCAGCCTAAGATCGGACCAGACT-GAGGGTTGCGAGTGCACATACTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTCGAGGGTTGCGAGTGCACATGCTAGGCTCGGG
* * ** *
1889701 CATGTACTGGTGTCGTATTTTTTTTTGCCCGGGGCACCATCGTCGGAGAACCTGACCGGTGGCAT
66 CATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGAACCTGACCGGTGGCAT
* *
1889766 TGGGGTTTCGACGATTGTGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATA
131 TGGGGTTCCGACGATTG-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
1889831 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACACACACCCCGTTAAAGAGC
194 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
1889896 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGATACTTTTTTC
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
1889961 AAATGGTCACAAAATCCTGTACACTTC-ATGTTTTTAGCTGAATTTTTTTGTGCTTGCCCACAAA
324 AAATGGTCACAAAATCCTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* * *
1890025 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTTTGAAAAAA-TTGAAAAAAATC
388 AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATC
* * *
1890089 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTACCGTGAAACTTC
453 CCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
*
1890154 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGA
518 ACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGA
* *
1890219 AATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCAAGGCTTGCGCATCCCGCCTCT
583 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCT
** *
1890284 CTGGCCGGTGTAGTGTCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTT
648 CTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTT
* * * * * * **
1890349 CATTCCCAATCTAAGATCAGACCAGACCAAGGGTTACGGCAGTAGGATCGATAGCATGCTGAGGG
713 CATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATTGACAGCACACTGAGGG
* * * *
1890414 GCACCCGGCCGATCCCCGGCTTGCGGATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGT
778 GGACCCGGCCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
1890479 TTCATGGGTTGACTTAGGCATACG
843 TTCATGGGTTGACTTAGGCATACG
* *
1890503 GAGTTTATTCCCAGTCTAAGATCAGATCC-GACT--ATGGGTTGCGAGTGCACATGCTAGGCTCG
1 GAGTTCATTCCCAGTCTAAGATCGGA-CCAGACTCGA-GGGTTGCGAGTGCACATGCTAGGCTCG
** ** *
1890565 GGCATGTGCTGGTGCCGTATTTTTTTTCGTTCGGGCCACCATCGCCGAAGCATCGGCTGAGAACC
64 GGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCAT---C---G--TC-G--GAGAACC
** * * *
1890630 TGACCGACGGCATTGGGGTTCCGACGATTGGGTGGGCTGGGGAGGGTGTGCACACATGATGTGCA
118 TGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGGC-GGGG-GGGTGTGCGCACATGATGTGCG
* *
1890695 ATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
181 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* ** * * * *
1890760 CCCCTTAAACAAAAATTGAGTTTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGG
246 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
1890825 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
311 GGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* *
1890890 CATGCCAACAAAAATACAAGGATCA-AGTTTACCAAGTTTTGGGCCAAAACTCCTTCTGAAAAAA
376 CATGCCAACAAAAATACAAGGATCACA-TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAA
* * * * *
1890954 TTTTAAAAAAATCCCAAACCGTAAAAGGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCATCTT
440 TTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
1891019 GCCAAGAAACTTCACAAGAAGGCTTAAAGGACCA-TGTATGAATTTACAAGCCATTAAAATGGCA
505 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
1891083 TTGGCATGGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTAC
570 TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
1891148 GCATCCCGCCTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTAATCGGTTGG
635 GCATCCCGCCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGG
* * ** * ** *
1891213 CTTTGGCATACGGAGTTCATTCCCAGTCTAAGATCATACCAGACTGAGGGTTGTGGTAGCAGGAC
696 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGAT
* * *
1891278 AGGCAGCACACTGAGGGGGACCCGGCCGATCCCCGGCTTGC-CATCCTACCCCTCTGGCCGGTTG
761 TGACAGCACACTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGCTG
* *
1891342 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
826 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * **
1891383 GAGTTCATTCACAGTCTAAGATCGGATCGGACT-GAGGGTTGCGAGTGCACATGCTAGGCTCAAG
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTCGAGGGTTGCGAGTGCACATGCTAGGCTCGGG
* * *
1891447 CAGGTGCTGGTGCCACATTTTTTTTCGTCCGGGCCACCATCGCCGGAGCATCGCCTGAGAACCTG
66 CATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCAT---C---G--TCG---GAGAACCTG
* * **
1891512 ACCGGTGACATTGGGGTTCCGACGATTGGGTGGGTCGGGGAGGGTGTATGCACATGATGAT-CGA
120 ACCGGTGGCATTGGGGTTCCGACGATTGGG-GGGGCGGGG-GGGTGTGCGCACATGATG-TGCGA
* *
1891576 TCGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
182 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* ** * * * *
1891641 CCCTTAAACAAAATTTCAGTTTTTACAAGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGG
247 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
1891706 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGC
312 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
** *
1891771 ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACT-CTTCTGAAAAAATT
377 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* * *
1891835 TTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCTTGC
442 TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* ** * *
1891900 CAAGAAACTTTGCATGAAGGCTTAAGGGACCA-TGTATGAAATTACAAGCCATTAAAATGGCATT
507 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
1891964 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGCGC
572 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * * * *
1892029 ATCCCGCCTCTCTGGCCGACGTAGTGCTTGCCCACCCGTCCGCTCGTTTCGTCGGTTGGCTTAGG
637 ATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGG
* * *
1892094 CATACGGAGTTCATTCCTAGTCTAAGATCATACCAGACCAAGGGTTGC-AGCAGCAGGA-TCAGC
702 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGA-CAGCAGGATTGA-C
* * * * *
1892157 AGCACACTGTGGGGGACCCGGCCGATCCCCGACTTGCCCATCGTACCCCTCTGGCCGACTGAGCG
765 AGCACACTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCG
* * * * * * *
1892222 CTCACACGTTCATTTCGTGGGTTGACTTAGGCAGATG
830 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* * * *
1892259 GAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGAGGGTTACGGGTGCACATGCTAGGCTTGGG
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTCGAGGGTTGCGAGTGCACATGCTAGGCTCGGG
* * * * **
1892323 AATGTGCTGGTGCCACATTTTTTTTTGCTCGGGGTACCATCGTCGGAGAACCTGACCGACGGCAT
66 CATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGAACCTGACCGGTGGCAT
* * *
1892388 TGGAGTTCCCG-TGATTAGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
131 TGGGGTT-CCGACGATT-GGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTA
* *
1892452 CTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGC
194 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
1892517 ATTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
259 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
1892582 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAATAAAA
324 AAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* *
1892647 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCC
389 ATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCC
* * *
1892712 CGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCA
454 CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* *
1892777 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCTTGGCAGAA
519 CATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAA
* * * *
1892842 ATTTGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTT
584 ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTC
* * * *
1892907 TGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCAGTTGGTTTAAGCATACGGAGTTC
649 TGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTC
* * * * * * * * * * *
1892972 ATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACAGTACGCAGAGGGG
714 ATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATTGACAGCACACTGAGGGG
** * * * *
1893037 GACCCAACCGATCCCCGGCATGTGCATCAC-GCCCCTCTGGCCGGCTGAGCGCACGCACGCTCGT
779 GACCCGGCCGATCCCCGGCTTGCGCATC-CTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
*
1893101 TTCGTGGGTTGACTTAGGCATACG
843 TTCATGGGTTGACTTAGGCATACG
* * *
1893125 GAGTTTATTCCCATTCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGAT
1 GAGTTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------CAGACT----CGAGGGT
* * * *
1893190 TAC-AGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA-TTTTTTTCGCCCAGGGAACCA
41 TGCGA-GTGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCA
* * * *
1893253 TCGACGGAGAAGCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTCCGCA
105 TCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGGTGTGCGCA
* ** * *
1893318 CATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTTTCCCCCTATCACTCATCAAACCTTG
170 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
1893383 AGAACTCACACCCCCTTAAAGACCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGT
235 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
1893448 CTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACATTTCGAGTTTTTAGCTGA
300 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGA
* *
1893513 ATTTTTTTGTGCATGCCAACAAAAATATAAGGATCACATCTACCAAGTTTGGGGTCAAAACTCCT
365 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCT
** * * * *
1893578 TCTGAAAATTTTTTTTAGAAAAA--CTGAACC-TAAAAAGTTTTAAAAATCATGAAAAATAGAAA
430 TCTGAAAA--AATTTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
*
1893640 ACGAGTCGTCTTGCCATGAAACTTCACTTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
493 ACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
1893705 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGA
558 ATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * * *
1893770 TCCACGGCTTGGGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCA
623 TCCACGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCA
** * * *
1893835 TTGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACC-GAACCGAGGGTTAC-A
688 TCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCAAGGGTTGCGA
* * * ** *** **
1893898 GCAGCATGA-TCAGTAGCACACTGAGGGGGACCCGGTGGATCTTTGGCTTGCGCATCCTGTCCCT
752 -CAGCAGGATTGA-CAGCACACTGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCTACCCCT
* * ** *
1893962 TTAGTTGGCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACG
815 CTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
*
1894014 GAGTTCATTCCCAATCTAAG
1 GAGTTCATTCCCAGTCTAAG
1894034 CATACAGAGT
Statistics
Matches: 3885, Mismatches: 427, Indels: 143
0.87 0.10 0.03
Matches are distributed among these distances:
862 107 0.03
863 17 0.00
864 252 0.06
865 490 0.13
866 678 0.17
867 6 0.00
868 4 0.00
869 1 0.00
870 2 0.00
872 1 0.00
873 1 0.00
874 2 0.00
875 123 0.03
876 150 0.04
877 401 0.10
878 89 0.02
879 224 0.06
880 453 0.12
881 127 0.03
887 4 0.00
888 4 0.00
889 366 0.09
890 281 0.07
891 49 0.01
892 53 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (866 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACTCGAGGGTTGCGAGTGCACATGCTAGGCTCGGG
CATGTGCTGGTGCCACATTTTTTTTCGCCCGGGGCACCATCGTCGGAGAACCTGACCGGTGGCAT
TGGGGTTCCGACGATTGGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
ATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
ACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCCG
AACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACA
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCTCTCTG
GCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATTGACAGCACACTGAGGGGGA
CCCGGCCGATCCCCGGCTTGCGCATCCTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
ATGGGTTGACTTAGGCATACG
Found at i:1893147 original size:26 final size:26
Alignment explanation
Indices: 1893118--1893170 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1893108 GTTGACTTAG
* * *
1893118 GCATACGGAGTTTATTCCCATTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1893144 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
1893170 G
1 G
1893171 ATCAGACTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:1894037 original size:26 final size:26
Alignment explanation
Indices: 1894007--1894059 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1893997 GTTGACTTAG
* *
1894007 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
*
1894033 GCATACAGAGTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAATCTAA
1894059 G
1 G
1894060 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAATCTAA
Found at i:1894061 original size:889 final size:889
Alignment explanation
Indices: 1892259--1894192 Score: 2793
Period size: 889 Copynumber: 2.2 Consensus size: 889
1892249 TAGGCAGATG
* *
1892259 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGGTGCACATGCTAGGCTTGGGA
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTAC-GGTGCACATGCTAGGCTCGGGC
* * *
1892324 ATGTGCTGGTGCCACATTTTTTTTTGCTCGGGGTACCATCGTCGGAGAACCTGACCGACGGCATT
65 ATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGTACCATCGACGGAGAACCTGACCGGCGGCATT
* * * * *
1892389 GGAGTTCCCG-TGATTAGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
130 GGGGTT-CCGATGATT-GGGGGGGCCGGGGGGTGTCCGCACATGATGTGCAATGGGTGCTGGTAC
* * *
1892453 TTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCA
193 TTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGACCA
*
1892518 TTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
258 TTTGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCA
* *
1892583 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAATAAAAA
323 AATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
*
1892648 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAATCCC
388 TACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAA-CCC
*
1892713 GAACCATAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCAC
452 GAACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCAC
*
1892778 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCTTGGCAGAAA
517 ATGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGGCAGAAA
* * *
1892843 TTTGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTT
582 TATGAAGATATGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
* * *
1892908 GGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCAGTTGGTTTAAGCATACGGAGTTCA
647 AGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCATCAGTTGGCTTAAGCATACGGAGTTCA
* * *** * * *
1892973 TTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGTAGGATCGACAGTACGCAGAGGGGG
712 TTCCTAGTCTAAGATCAGACCGAACCGAGGGTTACAGCAGCAGGATCGACAGCACACAGAGGGGG
* *
1893038 ACCCAACCGATCCCCGGCATGTGCATCACGCCCCTCTGGCCGGCTGAGCGCACGCACGCTCGTTT
777 ACCCAACCGATCCCCGGCATGCGCATCACGCCCCTCTAGCCGGCTGAGCGCACGCACGCTCGTTT
* * *
1893103 CGTGGGTTGACTTAGGCATACGGAGTTTATTCCCATTCTAAGCATACA
842 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACA
* * * *
1893151 GAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGATTACAGGTGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTAC-GGTGCACATGCTAGGCTCGGGC
* * * * *
1893216 ATGTGCTGGTGCCACA-TTTTTTTCGCCCAGGGAACCATCGACGGAGAAGCTGACCGGTGGCATT
65 ATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGTACCATCGACGGAGAACCTGACCGGCGGCATT
*
1893280 GGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTCCGCACATGATGTGCAATGGGTGCTGGTACTT
130 GGGGTTCCGATGATTGGGGGGGCCGGGGGGTGTCCGCACATGATGTGCAATGGGTGCTGGTACTT
**
1893345 GGCCCTTATATTTTCCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGACCATT
195 GGCCCTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGACCATT
* *
1893410 TGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCAAA
260 TGAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCAAA
*
1893475 TGGTCACAAAATCCTGTACATTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
325 TGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * * ** * *
1893540 TAAGGATCACATCTACCAAGTTTGGGGTCAAAACTCCTTCTGAAAATTTTTTTTAGAAAAA-CTG
390 CAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAA--AATTTTAAAAAAACCCG
* * * *
1893604 AACC-TAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACT
453 AACCATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACA
*
1893668 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAAT
518 TGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGGCAGAAAT
* *
1893733 ATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGGGCATCCCGTCTCTCTA
583 ATGAAGATATGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTA
* * * * ** *
1893798 GTCGGCGTAGTGCCCGCCCGCCCGCCTGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTTCAT
648 GCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCATCAGTTGGCTTAAGCATACGGAGTTCAT
* * *
1893863 TCCTAGTCTAAGATCAGACCGAACCGAGGGTTACAGCAGCATGATC-AGTAGCACACTGAGGGGG
713 TCCTAGTCTAAGATCAGACCGAACCGAGGGTTACAGCAGCAGGATCGA-CAGCACACAGAGGGGG
**** *** * * * ** * *
1893927 ACCCGGTGGATCTTTGGCTTGCGCATC-CTGTCCCTTTAGTTGGCTGAGCGCCCGTACGCTCGTT
777 ACCCAACCGATCCCCGGCATGCGCATCAC-GCCCCTCTAGCCGGCTGAGCGCACGCACGCTCGTT
1893991 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACA
841 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACA
* ** * * ** *
1894040 GAGTTCATCCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGATGTGCATGCTAGGCTCAGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGG-TGCACATGCTAGGCTCGGGC
* * *
1894105 ATGTGCTGGTGCCTCATTTTTTTTTGCCTGGGGTACCATC-ACCGGAGAACCTGACTGGCGGCAT
65 ATGTGCTGGTGCCACATTTTTTTTTGCCCGGGGTACCATCGA-CGGAGAACCTGACCGGCGGCAT
*
1894169 TGGGGTTTCGATGATTGGGGGGGC
129 TGGGGTTCCGATGATTGGGGGGGC
1894193 GAGGGAGGGG
Statistics
Matches: 920, Mismatches: 114, Indels: 18
0.87 0.11 0.02
Matches are distributed among these distances:
888 4 0.00
889 442 0.48
890 341 0.37
891 49 0.05
892 84 0.09
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (889 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTGCACATGCTAGGCTCGGGCA
TGTGCTGGTGCCACATTTTTTTTTGCCCGGGGTACCATCGACGGAGAACCTGACCGGCGGCATTG
GGGTTCCGATGATTGGGGGGGCCGGGGGGTGTCCGCACATGATGTGCAATGGGTGCTGGTACTTG
GCCCTTATATTGGCCCCCTATCACTCATCAAACCTTGAGAACTCACACCCCCTTAAAGACCATTT
GAGATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCAAAT
GGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
AAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAAACCCGAAC
CATAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATGAAACTTCACATGA
AGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCATTGGCATGGCAGAAATATG
AAGATATGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCC
GACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCATCAGTTGGCTTAAGCATACGGAGTTCATTCC
TAGTCTAAGATCAGACCGAACCGAGGGTTACAGCAGCAGGATCGACAGCACACAGAGGGGGACCC
AACCGATCCCCGGCATGCGCATCACGCCCCTCTAGCCGGCTGAGCGCACGCACGCTCGTTTCATG
GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACA
Found at i:1897577 original size:24 final size:24
Alignment explanation
Indices: 1897549--1897594 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
1897539 GGGGTCGGGG
1897549 GGGTGTGTGCACATGATGTGCGAT
1 GGGTGTGTGCACATGATGTGCGAT
1897573 GGGTGTGTGCACATGATGTGCG
1 GGGTGTGTGCACATGATGTGCG
1897595 CTGGTACTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.15, C:0.13, G:0.43, T:0.28
Consensus pattern (24 bp):
GGGTGTGTGCACATGATGTGCGAT
Found at i:1899171 original size:26 final size:26
Alignment explanation
Indices: 1899135--1899185 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
1899125 TGACATAGGG
1899135 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
1899161 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
1899186 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:1901267 original size:838 final size:850
Alignment explanation
Indices: 1897594--1902109 Score: 3814
Period size: 857 Copynumber: 5.2 Consensus size: 850
1897584 CATGATGTGC
* * *
1897594 GCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCTAGAACTCACTCCCCCTT
1 GCTGGTACTTGGCCTTTATATTGGCCCT-TATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
*
1897659 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACAC
65 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
*
1897724 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGTC
130 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** * * *
1897789 AACAAAAATATAAGGATCACATCTACCAAGTTTGGCGCTAAAACCCCTTCTGAAAAAATTTTAAA
195 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTAAAA
** *
1897854 AAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
260 AAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
1897919 AAC-TCACATGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAATGGCTATTGGCA
325 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGC-ATTGGCA
* * * * *
1897983 TGGAAGGAAATATGAAGATGGTGCCT-AACCCACCCTACCACCCTATCGATCCATGGCTTGTGCA
388 TGGCA-GAAATATGAA-AT-GTGCCTAAACCCA-CCTACCACCTTATCGATCCACGACTTGCGCA
* * * * *
1898047 TCCCACCTTCTCTGGCCGACGTAGTGCCGCCCGACCCGCCCGCTCATTC-GTTCGCGTTGGC-TA
449 T-CCGCC-TCTCTAGTCGACGTAGT---GCCC--CCCGCCCGCTCATTCTG-TC-AGTTGCCTTA
* * * * * * * *
1898110 TGC-TAC-GAGTTTCATTCCCA-TCTAAGAT-AGATC-GATACGA-GGTTGCTTGGGTGTAGGAT
505 GGCATACGGAG-ATCATT-CCAGTCTAAGATCA-ACCAGA-CCGAGGGTTAC-AGCG-GCA-GAT
** * * * *
1898169 TGGTAGCACGCT-AAGGGGACCCCACTCGACGATCCCTGGCTTGCGCATCCTG-C-CTCTCG-CT
563 CAGTAGCACGCTAAAGGGGA--CC-C-GGACGATCACTGGCTTGCGCATCCTGCCGCTCTGGTCG
* * * * ** * *
1898230 GCTGAGGCAGCCGCC-GC-TTCGTTTCGCT-GGTTGACTTAG-GCTACAG-GTTCATTCCCAGTC
624 GCTGA-AC-GCC-CCAGCGCTCGTTTCG-TGGGTGGACTGAGAAATGCGGAGTTCATT-CCAGTC
* * * * * * *
1898290 T-GGATTAGACCAGGA-AGA-GGTTG-GGGTGTACATAT-GGGCTCGGGCATGTGGCTGGTGCTG
684 TAAGATCAGACC-GGACCGAGGGTTGCGAGTGCACATGTCGGGCTCGGGCATGT-GCTGGTGCCG
* * * *
1898350 CATTTTTTTTCGCACGAGCACATCCCGGAGCATCATC-GATCGAACCTGCACC--C-GCATATGG
747 CATTTTTTTTCACTCGGGC-CA---C--A--ATCGTCGGA--GAACCTG-ACCGACGGCAT-TGG
* *
1898411 AAGGTTTCGACGATTGGGGCGG--GGGGGT-TGCG-ACATG-TGT-CGATGGGT
800 --GATTT-GACGATTGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
1898459 GCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
1 GCTGGTACTTGGCCTTTATATT-GGCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
**
1898524 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGATATTAAAGTGTCTGAAATGGGGACAC
65 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
1898589 TTTTTTCAAATGGTCACAAAATCCTATACACTACGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
130 TTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * ** * * *
1898654 CACAAAAATACAAGGACCATGAACCATAAAAAGTTTGGGGGCAAAACTCCTTCTGAAAAAA-TAA
195 AAAAAAAATACAAGGATCATG--TC-TACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTA
* * *
1898718 AAAAAAATC-TGAACCATAAAAAGTTTCAAAAATTGTGAAAAATAAAAAACGAGTCGTCTTGCCA
257 AAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
1898782 TGAAACTTCACATGAAGGCTTAAGGGAACATTGTATGAATTTATAAGCCATAAAAGTGGCATTGG
322 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA-TGGCATTGG
* * * **
1898847 CATGGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTTTGCAT
386 CATGGCAGAAATATGAA-ATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACTTGCGCAT
* * * * * * *
1898912 CCCGTCTCTCTGGCCGACATAGTGCCCGCCCACCTGCCCGCTCGTT-TCGTCGGTTGGCTTAGGC
450 -CCGCCTCTCTAGTCGACGTAGTG--C-CCC-CC-GCCCGCTCATTCT-GTCAGTTGCCTTAGGC
* * * * * * * ** *
1898976 ATACAGAGTTCATTCCCAGTCTAAGATTGAACCAAACTGAGGGTTGCGGTAGCAGGATCAGCAGC
508 ATACGGAGATCATT-CCAGTCTAAGA-TCAACCAGACCGAGGGTTACAGCGGCA-GATCAGTAGC
* ** * * * * * * *
1899041 ATGCTGAAA-GGGA-CTTGACTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCAC
570 ACGCT-AAAGGGGACCCGGAC-GATCACTGGCTTGCGCATCCTGCCGCTCTGGTCGGCTGAACGC
* * *
1899104 CCGCA-CGCTCATTTTGTGGGTTGACATAGGGATACGGAGTTCATTCCCAGTCTAAGCATACGGA
633 CC-CAGCGCTC-----GT---TT--CGT-GGG-T--GGA---C--T--GAG---AA--ATGCGGA
* * * *
1899168 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGGTGCACATG-CTAGGCTCGGGCA
671 GTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAGTGCACATGTC-GGGCTCGGGCA
* * * ** * ** **
1899232 TGTGCTGGTGCCTCATTTTTTTTCGCCCGGGGTACCATCGTTAGAGAACCTGATTGACGGCATTG
734 TGTGCTGGTGCCGCATTTTTTTTCACTCGGGCCACAATCGTCGGAGAACCTGACCGACGGCATTG
*
1899297 GGGTTTCGACGATT-GGGGGGCCGGGGGTTGTGCGCACATGATGTGCGATGGGT
799 GGATTT-GACGATTGGGGGGGCCGGGGG-TGTGCGCACATGATGTGCGATGGGT
* * * * *
1899350 GCTAGTAATAGGGCCTTTATATTGGCCCTCTATCCCTCATCAAACCTCTAGAACTCACTCCCCCT
1 GCTGGTACT-TGGCCTTTATATTGGCCCT-TATCCCTCATCAAACCTCAAGAACTCACACCCCCT
*
1899415 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACA
64 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
1899480 CTTTTTTCAAATGTTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
129 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
1899545 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTAAA
194 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTAAA
1899610 AAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAAT-GAAAAACGAGTCGTCTTGCCAT
259 AAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTCTTGCCAT
* * * * *
1899674 GAAACTTCACATGTAGACTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGCCATTCGC
323 GAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGC
* *
1899739 ATGGCAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCCACGACTTGCGCATC
387 ATGGCAGAAATATGAA-ATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACTTGCGCAT-
* * * * *
1899804 CCGCCTCTCTAGTCGGCGTAGTGCCCCTCGCCCGCTCGTTTTGTCAGTTGGCTTAGGCATACGGA
450 CCGCCTCTCTAGTCGACGTAGTGCCCCCCGCCCGCTCATTCTGTCAGTTGCCTTAGGCATACGGA
* ** *
1899869 GTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTATAGCGGCAGGATCAGTAGCACGCTAA
515 GATCATT-CCAGTCTAAGA-TCAACCAGACCGAGGGTTACAGCGGCA-GATCAGTAGCACGCTAA
* *
1899934 AGGGGACCCGGTCGATCACTGGTTTGCGCATCCTGCCGCTCTGGTCGGCTGAACGCCCCAGCGCT
577 AGGGGACCCGGACGATCACTGGCTTGCGCATCCTGCCGCTCTGGTCGGCTGAACGCCCCAGCGCT
* * ** * *
1899999 CGTTTCGTGGGTGGGCTTAGGCATGCGGAGTTCATTCCCAGTCTACGATCAGACGGGACCGAGGG
642 CGTTTCGTGGGTGGACTGAGAAATGCGGAGTTCATT-CCAGTCTAAGATCAGACCGGACCGAGGG
* * * * *
1900064 TTGCGGGTGCACATGTTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTTTTCACTCGGGGCACCA
706 TTGCGAGTGCACATGTCGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACTCGGGCCACAA
* * * ** *
1900129 TCGTCGGAGAACCTGTCC-AGTGGCATTGGGTTTTTGGGGATAGGGGGCGG--GGGGGTGTGCGC
771 TCGTCGGAGAACCTGACCGA-CGGCATTGGG-ATTTGACGATTGGGGG-GGCCGGGGGTGTGCGC
1900191 ACATGATGTGCGATGGGT
833 ACATGATGTGCGATGGGT
* ** * *
1900209 GCTGGTACCTGGCCCATATATTGGCCCCTATCACTCATCAAACCTCAAGAACTCACACCCCCTTA
1 GCTGGTACTTGGCCTTTATATTGGCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
*
1900274 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACT
66 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
1900339 TTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGAATGCCA
131 TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * ** *
1900404 ACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTAAAAAAATTCT-AAA
196 AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATT-TAAAA
**
1900468 AAAATCTTGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
260 AAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * *
1900533 AACTTCAGATGAAGGCTTAAGGGACCATTGTATGAATCTTACAAAGCCAT-AAATGGCAATGGCC
325 AACTTCACATGAAGGCTTAAGGGACCATTGTATGAAT-TTAC-AAGCCATAAAATGGCATTGGCA
* *
1900597 T-GCAGAAATAATGAAATTGTGCACTAAACCTACCTACCACCTTATC-ATCCACGGC-TGCGCAT
388 TGGCAGAAAT-ATGAAA-TGTGC-CTAAACCCACCTACCACCTTATCGATCCACGACTTGCGCAT
* *
1900659 -C-CCTCATCTGGTCGCACGTAGTGCCCGCACCTGCGCCGCTCATATCTGT-GGTTGCCTTA-G-
450 CCGCCTC-TCTAGTCG-ACGTAGTGCCC-C-CC-GC-CCGCTCAT-TCTGTCAGTTGCCTTAGGC
* * * *
1900719 ATTACGGA-ATCA-T-CTGTCT-AG-TCAACCAGACCTGA-GGTTGCAGC-GC-GATCGGT-GTA
508 A-TACGGAGATCATTCCAGTCTAAGATCAACCAGACC-GAGGGTTACAGCGGCAGATCAGTAGCA
* * *
1900775 TGC-AGA-GGGACCC-GACGATCCCTGGCTT-CGCATCCTGCC-C-CT-G-CGGCTG-A-GCACC
571 CGCTAAAGGGGACCCGGACGATCACTGGCTTGCGCATCCTGCCGCTCTGGTCGGCTGAACGC-CC
* * *
1900830 C-GC-CTTCG-TTCGT-GGT-GACTGCGAAAT-C-G-GTTGCA-T-CTG-CTGAAGATC-GGCCG
635 CAGCGC-TCGTTTCGTGGGTGGACTGAGAAATGCGGAGTT-CATTCCAGTCT-AAGATCAGACCG
* *
1900883 GACCGAGGG-TGCGAGT-CACATG-CGGGCTCGGGCATGTGCTGGTGTCGCATTTTTTTT-GCTC
697 GACCGAGGGTTGCGAGTGCACATGTCGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACTC
* *
1900944 GGGCCACTAATGCCGGTGCATCACTGGAGAACCTGACCGACGACATTGGGATTCTGATGATTGGG
762 GGGCCAC-AAT--C---G--T--C-GGAGAACCTGACCGACGGCATTGGGATT-TGACGATTGGG
*
1901009 GGGGCCGGGGGTGTGCACACATGATGTGCGATGGGT
815 GGGGCCGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
1901045 GCTGGTACTTGGCCTTTATATTGGTCTCCTTGTCCCTCATCAAACCTCGACAACTCACACCCCCT
1 GCTGGTACTTGGCCTTTATATTGG-C-CCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* * *
1901110 TAAAGAGCATTTGAGATTTCACAGGTTTGCTACCAGTAACCATTAAAGTGTCTGAAATGGGGACA
64 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
1901175 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGC
129 CTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
1901240 CAAGAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTAAA
194 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTAAA
** * * *
1901305 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTGGTCTTGCCATG
259 AAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
1901370 -AACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTA
324 AAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCA
* * ** * *
1901434 TGGCAGAAATATAAAGATGTACCTAAACCCACCTACCACCTTATCGATCCGTGGCTTTCGCATCC
388 TGGCAGAAATATGAA-ATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACTTGCGCATCC
* * * * * * * * * *
1901499 -CGCTCTCTGGTCGGCATATTGCCCGCCCGCCCACCCGCTCGTTCCGTCGGTTGGCTTCGACATA
452 GC-CTCTCTAGTCGACGTAGTGCCC-CCCG----CCCGCTCATTCTGTCAGTTGCCTTAGGCATA
* * ** ** *
1901563 CGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTAC-GATAGTAGGATCAGTAGCAC
511 CGGAGATCATT-CCAGTCTAAGATCA-ACCAGACCGAGGGTTACAG-CGGCA-GATCAGTAGCAC
* * * * ** * * * * *
1901627 GC-AGAGAGGGACCC-GATCGATCCCCGACTTATGCATCCTGCCCCTCTGGCCGGTTGAGCACCT
572 GCTAAAG-GGGACCCGGA-CGATCACTGGCTTGCGCATCCTGCCGCTCTGGTCGGCTGAACGCC-
* * * *
1901690 GCA-CGCTCGTTTCTTTGGTTGACTTAGGCAGACGGAGTTCATTCCCAGTCTAAGCATACGGAGT
634 CCAGCGCTCGTTTC-------G---T-GG--G-TGGA---C--T--GAG---AA--ATGCGGAGT
* * * * * * *
1901754 TCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGGTGCACATG-CTGGGCTTGGGTATA
673 TCATT-CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAGTGCACATGTC-GGGCTCGGGCATG
* ** * * * *
1901818 TGCTGGTACCATATGTTTTTTT-GCTCGAGCCACCATCGTCGGAGCATTGTCGGAGAACCTGACT
736 TGCTGGTGCCGCAT-TTTTTTTCACTCG-G--GCCA----C--A--ATCGTCGGAGAACCTGACC
* * * * * * * * *
1901882 GGCAGCATTGGGCTTCCGACGATTAGGGGGGCCAGGGGGGTTGTGTGCCCACGATGTGTGATGGG
789 GACGGCATTGGGATT-TGACGATTGGGGGGGCC--GGGGG-TGTGCGCACATGATGTGCGATGGG
1901947 T
850 T
* * * * *
1901948 GCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAACCTTAAGAACTCACA-CCCTTT
1 GCTGGTACTTGGCCTTTATATT-GGCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTT
* * * *
1902012 AAAGAGCATGTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATAT
65 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
1902077 TTTTTTCAAATGGTCACAAAATCCTGTACACTT
130 TTTTTTCAAATGGTCACAAAATCCTGTACACTT
1902110 GTATGAATTT
Statistics
Matches: 3052, Mismatches: 373, Indels: 416
0.79 0.10 0.11
Matches are distributed among these distances:
824 9 0.00
825 34 0.01
826 6 0.00
827 7 0.00
828 14 0.00
829 7 0.00
830 1 0.00
831 4 0.00
832 4 0.00
833 1 0.00
834 11 0.00
835 40 0.01
836 84 0.03
837 74 0.02
838 303 0.10
839 31 0.01
840 11 0.00
841 6 0.00
842 2 0.00
843 11 0.00
844 16 0.01
845 9 0.00
846 8 0.00
847 15 0.00
848 7 0.00
850 8 0.00
851 23 0.01
852 2 0.00
853 15 0.00
854 24 0.01
855 20 0.01
856 19 0.01
857 344 0.11
858 51 0.02
859 59 0.02
860 132 0.04
861 17 0.01
862 37 0.01
863 40 0.01
864 62 0.02
865 246 0.08
866 84 0.03
867 67 0.02
868 29 0.01
869 4 0.00
872 5 0.00
873 1 0.00
874 3 0.00
875 5 0.00
876 4 0.00
878 6 0.00
881 4 0.00
883 2 0.00
884 5 0.00
885 22 0.01
886 143 0.05
887 14 0.00
888 15 0.00
889 37 0.01
890 17 0.01
891 208 0.07
892 211 0.07
893 14 0.00
894 6 0.00
895 41 0.01
896 27 0.01
897 5 0.00
898 7 0.00
899 20 0.01
900 50 0.02
901 98 0.03
902 32 0.01
903 46 0.02
904 1 0.00
905 1 0.00
907 1 0.00
908 1 0.00
910 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (850 bp):
GCTGGTACTTGGCCTTTATATTGGCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTTAAAAA
AAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGCATGG
CAGAAATATGAAATGTGCCTAAACCCACCTACCACCTTATCGATCCACGACTTGCGCATCCGCCT
CTCTAGTCGACGTAGTGCCCCCCGCCCGCTCATTCTGTCAGTTGCCTTAGGCATACGGAGATCAT
TCCAGTCTAAGATCAACCAGACCGAGGGTTACAGCGGCAGATCAGTAGCACGCTAAAGGGGACCC
GGACGATCACTGGCTTGCGCATCCTGCCGCTCTGGTCGGCTGAACGCCCCAGCGCTCGTTTCGTG
GGTGGACTGAGAAATGCGGAGTTCATTCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAGTGC
ACATGTCGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCACTCGGGCCACAATCGTCGGAGA
ACCTGACCGACGGCATTGGGATTTGACGATTGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGA
TGGGT
Found at i:1902357 original size:274 final size:275
Alignment explanation
Indices: 1901861--1902383 Score: 791
Period size: 274 Copynumber: 1.9 Consensus size: 275
1901851 CATCGTCGGA
* * *
1901861 GCATTGTCGGAGAACCTGACTGGCAGCATTGGGCTTCCGACGATTAGGGGGGCCAGGGGGGTTGT
1 GCATCGTCGGAGAACCTGACCGACAGCATTGGGCTTCCGACGATTAGGGGGGCCAGGGGGGTTGT
** * **
1901926 GTGCCCACGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAA
66 CCGCACACGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAA
* * * *
1901991 CCTTAAGAACTCACACCCTTTAAAGAGCATGTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTA
131 CCTCAAGAACTCACACCCCTTAAAAAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
1902056 AAGTGTCTGAAATGGGGATATTTTTTTCAAATGGTCACAAAATCCTGTACACTTGTATGAATTTA
196 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTGTATGAATTTA
1902121 CAAGCCGTAAAAATG
261 CAAGCCGTAAAAATG
* * *
1902136 GCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATT-GGAGGGGTC-GGGGGG-TG
1 GCATCGTCGGAGAACCTGACCGACAGCATTGGGCTTCCGACGATTAGG-GGGGCCAGGGGGGTTG
* * **
1902198 TCCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGGTCCCTATCCCTCATCAA
65 TCCGCACACGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAA
* * *
1902263 ACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCAT
130 ACCTCAAGAACTCACA-CCCCTTAAAAAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
1902328 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
194 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTT
1902384 CGAGTTTTTA
Statistics
Matches: 222, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
273 72 0.32
274 105 0.47
275 45 0.20
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.28
Consensus pattern (275 bp):
GCATCGTCGGAGAACCTGACCGACAGCATTGGGCTTCCGACGATTAGGGGGGCCAGGGGGGTTGT
CCGCACACGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTCGCCCCCTATCCCTCATCAAA
CCTCAAGAACTCACACCCCTTAAAAAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTGTATGAATTTA
CAAGCCGTAAAAATG
Found at i:1904395 original size:875 final size:871
Alignment explanation
Indices: 1902143--1907917 Score: 7470
Period size: 876 Copynumber: 6.6 Consensus size: 871
1902133 ATGGCATCGT
* *
1902143 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATTGGAGGGG-TCGGGGGGTGTCCGCACAT
1 CGGAGAACCTGAACGACGGCATTGGGGTTCCGACGATTGG-GGGGCT-GGGGGGTGTGCGCACAT
* **
1902207 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGGTCCCTATCCCTCATCAAACCTCGAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
1902272 ACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
1902337 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAATT
* * *
1902402 TTTTTGTGCATGCCCACAAAAAAACAATGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
259 TTTTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
* * * ** *
1902467 GAAAAAATTTTAAAAAATCCCAAATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGT
323 GAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
1902532 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATTAATTTACCAGCCATAAAA
388 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** * *
1902597 ATGGCATTGGCATGGAAGAAATATGAAGATGTGCCTAAACGAACCTACTACCCTATTGATCCACG
453 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * *
1902662 GCTTACGGATCACGCCTCTCAGGCCGACGTAGCGTCCGCCTGCCCGTCCGCTCGTTCGTTTCATC
518 GCTTGCGCATCCCGCCTCTCTGGCCGACGTA--GT--GCCCGCCCGTCCGCCCGCTCGTTTCATC
* * * ** **
1902727 GGTTGGCTTAGGCTTACGGAGTTCATTCACAGTCTAAGATCGGACC-GAACTAAGGGTTGCAACA
579 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-GAACCAG-ACCGAGGGTTGCAGTA
* * * * * * **
1902791 GCAGGATCGGCAGCACGCTGAGGGGGACCCGATCGAACCTCGGCTTGTGCATCCTGCTTCTCTGG
642 GCAGGATCGACAGCACGCTGAGGGGGACCCGACCGATCCTCGACTTGCGCATTCTGCCCCTCTGG
* **
1902856 CC-GACTGAGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
707 CCAG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTC
* * * * * **
1902920 TAAGATCGGACCAGATCGAAGGTTCCAGGTGCTCATGCTGGGCTC-GAGCATGTGCTGGTGTTGC
771 TAAGATCAGACCAGACCGAGGGTT-CGGGTGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGC
* * *
1902984 ATTTTTTTTCGCCCGGGGCACCATCGCCTGAGCATCAT
834 ATTTTTTTTCGCTCGGGGCACCATCGCCGGAGCATCAC
* * * * ** * *
1903022 CGGAGAACCTG-GCTGGCAGCATTAGGGTTCCGACGATTGGGGGGCCAGGGGGTGTGCACTCATG
1 CGGAGAACCTGAAC-GACGGCATTGGGGTTCCGACGATTGGGGGGCTGGGGGGTGTGCGCACATG
1903086 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
1903151 CTCACA-CCCCTTAAAGAGCATTTAAGA-TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
1903214 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAATTT
* * * *
1903279 GTTTGTGCATGCCCACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTATG
260 TTTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* *
1903344 AAAAAATTTAAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
324 AAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
1903409 ATCTTGCCATGAAACTTCACATGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAA
389 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
**
1903474 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAATCACCTACCACCCTATCGATCCA-GG
454 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
1903538 TCTTGCGCATCCTGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCTGCCCGTTCGTTTTATCGGTT
519 -CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTT
* * * * * *
1903603 AGCTTAGGCATAAGGTGTTCATTCCCAGTCTAAGATTGAACCAGACTGAGGGTTACGGTAGCAGG
583 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TGAACCAGACCGAGGGTTGCAGTAGCAGG
* * * *
1903668 ATCGACAGCATGCTGAGGGGGACCCAACCGATCCTCGACTTGCGGATTCTGCCCCTCTGGCCAGT
647 ATCGACAGCACGCTGAGGGGGACCCGACCGATCCTCGACTTGCGCATTCTGCCCCTCTGGCCAGC
* *
1903733 TGTGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
712 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
* * * *
1903798 TAGACCAGACCGAGGGTTACGAGTGCACATGCTGGGCTCAGGCATGTGCGGGTGCCGTATTTTTT
777 CAGACCAGACCGAGGGTT-CGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTT
* *
1903863 TTCGCTCGAGGCACCATCGCCGGAGCATTAC
841 TTCGCTCGGGGCACCATCGCCGGAGCATCAC
* *
1903894 CGGAGAACCTGAACGATGGCATTGGGGTTCCGATGATTGGGTGGGCTGGGGGGTGTGCGCACATG
1 CGGAGAACCTGAACGACGGCATTGGGGTTCCGACGATTGGG-GGGCTGGGGGGTGTGCGCACATG
* * * *
1903959 ATGTGCGGTGAGTGCTGGTACTTGGGCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
1904024 CTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
1904089 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCAAGTTTTTAGCTGAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAATTT
* *
1904154 TTTTGTGCATGCCAACAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTCA
260 TTTTGTGCATGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
* ** * *
1904219 AAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAAGGAATC
325 AAAAA-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* *
1904284 GTCTTGCCATGAAACATCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAA
389 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
1904349 TGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGG
454 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * * *
1904414 CTTGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCATCCCGACCACCCACTCGTTTCATCGGTTG
519 CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTG
* * * * *
1904479 GTTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAAGA
584 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGA-ACCAGACCGAGGGTTGCAGTAGCAGGA
* * * * * * *
1904544 TTGACAGCACGCAG-GGGGGACCCCG-TCGATCCCCGACTTGTGCATCCTTCCCCTCTGGCC-GA
648 TCGACAGCACGCTGAGGGGGA-CCCGACCGATCCTCGACTTGCGCATTCTGCCCCTCTGGCCAG-
* * * * *
1904606 TTGAACGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAATTCATTCCCAGTGTAAGA
711 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
* * * * * * *
1904671 TCAGACCGGATCGAGGGTTGTGGGTGCACATGTTGGGCTCGGGCATGTGTTGGTGCGGCATTTTT
776 TCAGACCAGACCGAGGGTT-CGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT
* *
1904736 TTTTGC-CAGGGGCACCATCCCCGGAGCATCAC
840 TTTCGCTC-GGGGCACCATCGCCGGAGCATCAC
* * * * * * * *
1904768 CGAAGAACCTG-ACGGGCGAG-ATTGGGGTTTCGGCAAAT-----G--GAGGGGTGTGCGCAGAT
1 CGGAGAACCTGAAC-GACG-GCATTGGGGTTCCGACGATTGGGGGGCTGGGGGGTGTGCGCACAT
*
1904824 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
1904889 ACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCGGCTAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
** * * * * * *
1904954 TGAAATGGGGACACAATTTTCAAATGGTCACAAAATCCTGTACAGTTAAAGTTTTTTGGTGACTT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAATT
* * * * **
1905019 TTTTTATGCATGCCAACAAAAGTACTAGGATCATGTCTACC-AGTTT-GGGACAAAAAACCTTCT
259 TTTTTGTGCATGCCAACAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCT
** *
1905082 GAAAATTTTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
323 GAAAA-AATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * * * *
1905147 TCGTCTTGCCTTGAAACATCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCAGAAA
387 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
1905212 AATGGTATTGGCATGGCA-AACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
452 AATGGCATTGGCATGGCAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * * **
1905276 CGGCTTGGGCATCCCACCGCTCTGGCCGGCGTAGT----GCCCGTTCGCCCGCTCGTTTTGTCGG
516 CGGCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCATCGG
* * * * *
1905337 TTGGCTTAGGTATACGGAGTTCATTCTCAGTCTAAGATGGA-CTGAACCGAGTGTTGC-GATAGC
581 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAACCAG-ACCGAGGGTTGCAG-TAGC
* ** * *
1905400 AGGATCAACAGCA-TAT-AGGGTGGACCCGACCGATCC-CGGCTTGTGCATTCTGCCCCAT-TGG
644 AGGATCGACAGCACGCTGAGGG-GGACCCGACCGATCCTCGACTTGCGCATTCTGCCCC-TCTGG
* **
1905461 CCAGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGG-ATATGGAGTTCATTCCCAGTCT
707 CCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCT
1905525 AAGCATACCGAGTTCATTCCCAGAGTAAGATAGGACCAGATCAAGGGTTGCGGGTGCACATGCTG
772 AAG-AT--C-AG---A---CC----------A-GACC-G----AGGGTT-CGGGTGCACATGCTG
** ** * * * *
1905590 GGCTTGGGCATGTGCTGGTGCCATATTTTTTTTTCGCCCGGGGCACCATCACTGGAGCATCGC
810 GGCTCAGGCATGTGCTGGTGCCGCA-TTTTTTTTCGCTCGGGGCACCATCGCCGGAGCATCAC
* * * * * *
1905653 CAGAGAACCTGACCGGCGGCATTGTGGTTCCGCCGATTGGGGGG-TGGGGGAGTGTACGCACATG
1 CGGAGAACCTGAACGACGGCATTGGGGTTCCGACGATTGGGGGGCTGGGGG-GTGTGCGCACATG
* * * * * *
1905717 ATGTGCAATGGGTGTTGGTACTTGGCCCTTATATTCG-CCCCTATCCTTTATCAAACCTCAAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
1905781 CTCACA-CCCCTTAAAGTGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
1905845 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAATTT
* * * *
1905910 GTTTGTGCATGCCCACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTATG
260 TTTTGTGCATGCCAAC-AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
* * *
1905975 AAAAAATTTAAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTC
324 AAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
**
1906040 GTCTTGCCATGAAACTTCACATGAAGGCTTAATAGACCATTGTATGAATTTACAAGCCATAAAAA
389 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * *
1906105 TGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACTCACCTACCACACTATCGATCCA-GG
454 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * *
1906169 TCTTGCGCATCCCGCCTCTCTGACCGACGTAGTGCCCGCCCGTCTGCCCGTTTGTTTTATCGGTT
519 -CTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTT
* * * * * *
1906234 GGCTTAGGCATAAGGTGTTCATTCCCAGTCTAAGATTGAACCTGACCAAGGGTTGCGGCAGCAGG
583 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TGAACCAGACCGAGGGTTGCAGTAGCAGG
* * * * *
1906299 ATCGGCAGCACGCTGAGGGGGACCCAACTGATCCTCGACTTGCGGATTCTGCCCCTCTGGCCAGT
647 ATCGACAGCACGCTGAGGGGGACCCGACCGATCCTCGACTTGCGCATTCTGCCCCTCTGGCCAGC
** * *
1906364 TCTGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACAG-GTTCATTGCCAGTCTAAGAT
712 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT
* * *
1906428 CAGACCAGACCGAGGGTTACGGGTGCACATGCTGGGCTCAGGCATGTGCGGGTGTCGTATTGTTT
777 CAGACCAGACCGAGGGTT-CGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATT-TTT
* * **
1906493 TTTCGCTCGAGGCACCATCGCTGGAGCATCGT
840 TTTCGCTCGGGGCACCATCGCCGGAGCATCAC
* * * *
1906525 CGGAGAACCTGAACGACGGCATTGGGGTTTCGATGATTGGGTGGGCTAGGGGGTGTGTGCACATG
1 CGGAGAACCTGAACGACGGCATTGGGGTTCCGACGATTGGG-GGGCTGGGGGGTGTGCGCACATG
* * * *
1906590 ATGTGCGGTGAGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
1906655 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
1906720 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATGCACTTCAAGTTTTTGGCTGAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAATTT
* * *
1906785 TTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTC
260 TTTTGTGCATGCC-AACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG
** * *
1906850 AAAAAAGTTTAAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAAT
324 AAAAAA-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* *
1906915 CGTCTTGCCCTGAAACTTCACATGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAA
388 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
1906980 ATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
453 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * ** * * *
1907045 GCATGCGCATCCCGCCTTTCTGGCCGACGTAGTGCCATCCCGACCACCCACTCGTTTCATCGGTT
518 GCTTGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTT
* * * * *
1907110 GGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTAGTAGTAGG
583 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATGA-ACCAGACCGAGGGTTGCAGTAGCAGG
* * * *
1907175 ATCGGCAGCATGCTGAGGGGGACCCGATCGATCCCCGACTTGCGC-TTCCTGCCCCTCTGGCCAG
647 ATCGACAGCACGCTGAGGGGGACCCGACCGATCCTCGACTTGCGCATT-CTGCCCCTCTGGCCAG
* * * * *
1907239 CTAAGTGACCGCACACTTGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
711 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
* * * *
1907304 TCAGACC-GAACCGAGTG-T-GGGTGCACATGCTGGGCT-TGGACATGTGCTGGTGTCACATTTC
776 TCAGACCAG-ACCGAGGGTTCGGGTGCACATGCTGGGCTCAGG-CATGTGCTGGTGCCGCATTT-
* **
1907365 TTTTT-GCTCGGGGCACCATCGTCGGAGCATCGT
838 TTTTTCGCTCGGGGCACCATCGCCGGAGCATCAC
* * * * *
1907398 CGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATTAGGGGGGCCGCGGGGTGTGCGCACTTG
1 CGGAGAACCTGAACGACGGCATTGGGGTTCCGACGATT-GGGGGGCTGGGGGGTGTGCGCACATG
*
1907463 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
1907528 CTCACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
1907593 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCGCA-TTTTTAACTGAATT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTC-AAGTTTTTAGCTGAATT
* *
1907657 TTTTTGTGCATGCCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAA-TCCCTTC
259 TTTTTGTGCATG-CCAACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTC
* * * *
1907721 TGAAAAAATTTAAAAAAATCTCAAATCGTAAAAAGTTTCAAAAATCACGAAAAATAGAAAACGAG
322 TGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
1907786 TCGTCTTGCCGTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
387 TCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
1907851 AATGGCATTAGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATTGATCCAC
452 AATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
1907916 GG
517 GG
1907918 TGTCATAAGC
Statistics
Matches: 4283, Mismatches: 512, Indels: 209
0.86 0.10 0.04
Matches are distributed among these distances:
858 21 0.00
859 68 0.02
860 37 0.01
861 54 0.01
862 2 0.00
864 2 0.00
865 218 0.05
866 219 0.05
867 16 0.00
868 3 0.00
871 2 0.00
872 581 0.14
873 467 0.11
874 350 0.08
875 592 0.14
876 732 0.17
877 57 0.01
878 88 0.02
879 37 0.01
880 1 0.00
884 41 0.01
885 57 0.01
886 2 0.00
888 2 0.00
890 143 0.03
891 239 0.06
892 65 0.02
894 2 0.00
895 55 0.01
896 27 0.01
897 21 0.00
898 78 0.02
899 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
CGGAGAACCTGAACGACGGCATTGGGGTTCCGACGATTGGGGGGCTGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTATACACTTCAAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
AAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGCCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGATGAACCAGACCGAGGGTTGCAGTAGCAGGATCG
ACAGCACGCTGAGGGGGACCCGACCGATCCTCGACTTGCGCATTCTGCCCCTCTGGCCAGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGA
CCAGACCGAGGGTTCGGGTGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTTTTCGC
TCGGGGCACCATCGCCGGAGCATCAC
Found at i:1914754 original size:26 final size:26
Alignment explanation
Indices: 1914716--1914768 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1914706 CTGGTCCGAT
* *
1914716 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
1914742 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
1914768 C
1 C
1914769 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:1917026 original size:876 final size:875
Alignment explanation
Indices: 1913113--1917458 Score: 5517
Period size: 909 Copynumber: 4.9 Consensus size: 875
1913103 TTCTAATCTG
* * * * * * *
1913113 ATCTTAGACTGGGAATGAACTCCGTATGCCCAAACCAACTGACGAAACGAGTGGGCAGGCAGGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * *
1913178 GACACTACACCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * **
1913243 AGGCACATCTTAATATTTTTGCCTTGCCAATGCCATTTTTATATCTTGTAAATTCAAGTACAAAT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTC-A-TAC-AAT
* * *
1913308 GGTCCCTTAAGACCTTCA-GTGAAGTTTAAT-GCAAAGGATGACTCGTTTTTCTATTTTTTGCAC
193 GGTCCCTTAAG-CCTTCATGTGAAGTTTCATGGC-AA-GACGACTC-ATTTTCTA-TTTTT-CAC
* * * * * *
1913371 GATTTTTTCAAACTCTTTACGGTTCATGAGAATTGTTTTTTAAATTTTTTTAGAAA-GACTTTTG
252 GA-TTTTTGAAACTTTTTACGGTTC--G-GGATT-TTTTTAAAATTTTTTCA-AAAGGAGTTTTG
* * *
1913435 GCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAA
311 GCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
1913500 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
376 ACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
1913565 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
441 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
1913630 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTGCAC-
506 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC--GCACA
* * * *
1913694 CCCCCCGGCCTTCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACAATGCTCCGA
569 CCCCCCGGCC-CCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGG
* * *
1913759 CGATGGTGCC-CTGGGTGAAAAAAAATACAGCACCAGGACATGCTCGAGCCCAGCATGTGCACCT
633 CGATGGTGCCTC-GGGTGAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCC
* * * * * *
1913823 GCAACCCTCGGTCCGATCTGATCTTAGACTGCGAATGAACTCCATATGCCTGAGTCAACCCACGA
697 GCAACCCTCGATCTGTTTTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGA
* * * * * * *
1913888 AACGAGCGTGCGGGCTCTCAATCGGCTAGATGGGTAGGATGCGTAAGCCGGGGATCGACCGGGTC
762 AACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGAGTC
* * * * ** * *
1913953 CCCCTCGGTGTGGTGCCGATCCTACTGCCGCAAACCTCGGTCCGATCCA
827 CCCCTCAGTGTGCTGCCAATCCTACTGCCGCAACCCTTAGTCCGGTTCA
* * * **
1914002 ATCTTAAACTGTGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGC--G-GGTAGGG-G
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
*
1914063 GGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
1914128 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
1914193 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTGGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGA
* * *
1914258 AACTTTTTACGGTTCGGGATTTTTTTCAACTTTTTCCAAAAGGAGTTTTGGCCCCAAACTTGGTA
261 AACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTA
* *
1914323 AACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAG
326 GACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
* * *
1914388 GATTTTGTGACCATTTGAACAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGTAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
1914453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
1914518 CAATATAATGGCCAAGTACCAGTACCCATCGCACATCTTGTGCGCACACCCCCCCGCCCCCCAAT
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAAT
* * ** * **
1914583 CGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCC-AGCGATGCTTTGGCGATGGTGGCTCGGGCA
586 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CAATGCTCCGGCGATGGTGCCTCGGGTG
* * *
1914647 AAAAAAAATACGGTACCAGCACATGCCCGAGCCCAGCATGTGCAGCCGCAACCCTCGATCTGGTC
650 AAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGATC---T-
* *
1914712 CGATCTTATACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
711 -G----T-T--T-----TG--------AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCA
* * * * *
1914777 ACCCCCGAAACGAGCGTGCGGGCCCTCAGTCGACCAGAGGGACAGGATGCGCAAGCCAGGGATCG
754 ACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* ** * ** * * *
1914842 ATCGAGTCCCCCTCAGCATGCTACTGATCCTGCTGCCGTAACCCTT-GATCCGGTCTGA
819 ACCGAGTCCCCCTCAGTGTGCTGCCAATCCTACTGCCGCAACCCTTAG-TCCGGT-TCA
* * * * *
1914900 A-CTTAGACTGGGAACGAACTTCGTATGCCTAGGCCATCCGATGAAACGAGCGGGCGCCCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA------G--CGGGCG
* * *
1914964 GGCGGGCGGGCACTACACCGGCCAGAGAGGCGAGATGCACAAGCCGTGGATCGATAGGGTGGTAG
58 GGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*** * * *
1915029 GTGGGTTTATTTACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCCTGTAAATTAAT
123 GTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
1915094 ACAATGTTCCCTTAAGCCTTCATGTGAAGTTTCATGGCGAGACGACTCGTTTTGTATTTTTCACG
188 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
* * * * *
1915159 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTTTCAGAATGATTTTTCGCCCCAA
253 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAA
* * * * *
1915224 ACTTGGTAGAGCTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAATTTGAA
318 ACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
1915289 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCCACTGG
383 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
1915354 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
448 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
1915419 TAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-
513 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
1915483 CCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGG---T------A--CTCCGGCGATGGTGGC
578 CCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGT-GC
* * * *
1915537 CT-GGGTGAAAAAAAATGCGGCACCAGCACATACTCGAGCCCAACATGTGAACCCGCAACCCTCA
642 CTCGGGTGAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTC-
* *
1915601 GTCCATCCGTTCTTAGACTTGGAACAAACTCCATATGCTTAATCTGGGAAGGAACTCCATATGCC
706 G---ATCTGTT-TT-GA--T--------CT---TA-G----A-CTGGGAATGAACTCCATATGCC
* * * * * * *
1915666 TAAGTCAACTCACGAAACGAGAGTGCGGGAACTGAGCCGACCAGAGGGGCAGGATGCGCAAAGAC
747 TAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCAGGATGCGC-AAGCC
* * * *
1915731 GGGGATCGATCGGGTCCCCCTCAGTGTGCTGCCAATCCTACTACCGCAACCCTTAGTCC-GATCT
811 GGGGATCGACCGAGTCCCCCTCAGTGTGCTGCCAATCCTACTGCCGCAACCCTTAGTCCGGTTC-
*
1915795 G
875 A
* * *
1915796 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACAAAACGAGCGGGCGGGCGAGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * * *
1915861 GGCACTACGTCGGCTAGAGAGGCAGGATGCGCAAGCCGTGG---G-T----CGGTACGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
1915918 AGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* ***
1915983 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTGTGATTTTTGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGA
** * * * *
1916048 AACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGATGGATTTTTGGCCCCAAACTTGGGA
261 AACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
1916113 GACATGATCGTTGTATTTTTTTTGGCATGCTCAAAAAAATT-AGGCTAAAAACTCGAAGTGTACA
326 GACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA-GCTAAAAACTCGAAGTGTACA
* *
1916177 GGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGTCTACTGGCAGCAAA
390 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
1916242 CCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** *
1916307 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTGCACCCCCCGGCCTACCCA
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCA
* * *
1916372 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCTCGGGC
584 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCTCGGGT
* * * *
1916437 GAAAAAAAATACAGCACCAGGACATGCTCGAGGCCAGCATGTGCACCTGCAACCCTCGATCTGTT
649 GAAAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGATCTGTT
* *
1916502 TTGATCTTAGACAGGGAATGATCTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCAC
714 TTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCAC
* * * * *
1916567 TCAGTCGGCTAGAGGGGCAGGATGCGCAAGTCGGGGATCGGCCGAGTCCCCCTCGGTGTGGTGCC
779 TCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCAGTGTGCTGCC
* **
1916632 AATCCTGCTGCCATAACCCTTAGTCCGGTTCA
844 AATCCTACTGCCGCAACCCTTAGTCCGGTTCA
* * *
1916664 ATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAATGAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
1916729 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
1916794 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
1916859 CCCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGA
* * *
1916924 AACTTTTTACGGTTCGGGATTTTTTTCAACTTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTA
261 AACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
1916989 AACCTAATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
326 GACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
* * *
1917054 GATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGTAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
1917119 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAAGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
1917184 CAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACACACACCCCCCGGCCCCCCAAT
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAAT
* * * * * * *
1917249 CATCAGAACACCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGGGTG-
586 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCTCGGGTGA
* * * * *
1917313 AAAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCACCCGCAACCCTCTG-TTTGGTC
651 AAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTC-GATCTGTTT
* * * *
1917377 CGTTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCACT
715 TGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACT
* *
1917442 CAGCCGGCCAAAGGGGC
780 CAGTCGGCCAGAGGGGC
1917459 GGGTGGGCAC
Statistics
Matches: 3005, Mismatches: 352, Indels: 215
0.84 0.10 0.06
Matches are distributed among these distances:
868 151 0.05
869 74 0.02
870 2 0.00
871 114 0.04
872 14 0.00
873 261 0.09
874 131 0.04
875 64 0.02
876 421 0.14
877 20 0.01
878 8 0.00
879 5 0.00
880 9 0.00
881 434 0.14
882 28 0.01
883 38 0.01
884 1 0.00
885 114 0.04
886 7 0.00
887 3 0.00
888 4 0.00
889 95 0.03
890 10 0.00
891 3 0.00
892 2 0.00
893 5 0.00
894 64 0.02
895 2 0.00
896 76 0.03
897 320 0.11
898 7 0.00
899 1 0.00
901 3 0.00
903 1 0.00
905 2 0.00
907 1 0.00
908 40 0.01
909 470 0.16
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGA
AACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTA
GACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAAT
CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGGCGATGGTGCCTCGGGTGA
AAAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGATCTGTTTT
GATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTC
AGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCAGTGTGCTGCCAA
TCCTACTGCCGCAACCCTTAGTCCGGTTCA
Found at i:1918164 original size:26 final size:26
Alignment explanation
Indices: 1918126--1918178 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1918116 CCGATCCGAT
* *
1918126 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
1918152 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
1918178 C
1 C
1918179 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:1918221 original size:743 final size:735
Alignment explanation
Indices: 1916666--1918250 Score: 2084
Period size: 743 Copynumber: 2.1 Consensus size: 735
1916656 CCGGTTCAAT
* *
1916666 CTTAAACTGGGAATGAACTCCGTATGCCTAAG-CTAACCGACGAAATGAGCGGGCGGGCGGGCGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTC-AACCGACGAAATGAGCGGGCGGGC---C--
* * *
1916730 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
60 -CTC-ACGTCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
1916795 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
123 GGCACATCTTCATATTTCTGCCATGCCAAAGCCATTTTTATGGCTTGAAAATTCATACAATGGTC
1916860 CCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
188 CCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
* * *
1916925 ACTTTTTACGGTTCGGGATTTTTTTCAACTTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAA
253 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAA
*
1916990 ACCTAATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
318 ACATAATCCTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* *
1917055 ATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGTAGCAAACC
383 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGTAGCAAACC
* *
1917120 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGATGAAGGATAGGGGGCC
448 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCAAGGTTTGATGAAGGATAGGGGGCC
* *
1917185 AATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTACACACACCCCCCGGCCCCCCAATC
513 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACACACACCCCCCGCCCCCCCAATC
* * * * **
1917250 ATCAGAACACCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGGGTGAA
578 ATCAGAACACCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGGGCAAA
* * ** * *
1917315 AAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCACCCGCAACCCTCTGTTTGGTCCGT
643 AAAAATGCGGCACCAGCACATGCTCGAGCCGAGCATGTACACCCGCAACCCTCTGTCCGATCCGA
*
1917380 TCTTAGACTGGGAATGAACTCCGTATGC
708 TCTTAGACTGGGAATGAACTCCATATGC
* * * * * * * * * * * * * * *
1917408 CTAAGTTAACCCACGAAACGAGCGTGCG---GGC--ACTCAGCCGGCCAAAGGGGCGGGTGGGCA
1 CTTAG---A-CTA-GGAATGAAC-TCCGTATGCCTAAGTCAACCGACGAAATGAGCGGGCGGGCC
*
1917468 CT-ACGTCGACCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAG
60 CTCACGTCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT--G-----G
1917532 GTTTAGGCACATCTTCATATTT-TGGCCATGCCAAAGCCATTTTTATGGCTTGAAAATTCATACA
118 GTTTAGGCACATCTTCATATTTCT-GCCATGCCAAAGCCATTTTTATGGCTTGAAAATTCATACA
* * * *
1917596 ATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
182 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATTTTTCACGATT
* * * *
1917661 TTTGAAACTTTTTATGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACT
247 TTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTAGCCCCAAACT
* * * * * * *
1917726 TGGTAGACATGATCCTTGTATTTTTATTTCGCATGCGCAAAAAATTTCAGCTAAAAACTGGAAGT
312 TGGTAAACATAATCCTTGTATTTTT-GTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
1917791 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT-GCATACTGGT
376 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGC-TACTAGT
* *
1917855 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGAT
440 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCAAGGTTTGATGAAGGAT
* *
1917920 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCACACACCCCCCCCGC
505 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--ACACACACCCCCCGC
* * *
1917985 CCCCCCAATCGTCGGAAC-CCTAATGCCGCCAGTCAGGTTCTCCGACGATGCTCTAGCGATGGTG
568 CCCCCCAATCATCAGAACACC-AATGCCGCCAGTCAGGTTCTCCGACGATGCTCCAGCGATGGTG
* * * *
1918049 GCCCGGGCAAAAAAAATGCGGTACCAGCACATGC-CTGAGCCGAGCATGTACGCCCGTAACCCTC
632 CCCCGGGCAAAAAAAATGCGGCACCAGCACATGCTC-GAGCCGAGCATGTACACCCGCAACCCTC
*
1918113 -GATCCGATCCGATCTTAGGCTGGGAATGAACTCCATATG-
696 TG-TCCGATCCGATCTTAGACTGGGAATGAACTCCATATGC
* *
1918152 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCCCTCA-G
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCGGGCGGGCCCTCACG
* * *
1918216 TCGACCAGAG-GGACAGGATGTGCAAGCCGGGGATC
66 TCGACCAGAGAGG-CGGGATGCGCAAGCCGTGGATC
1918251 TGTCGAGTCC
Statistics
Matches: 719, Mismatches: 95, Indels: 57
0.83 0.11 0.07
Matches are distributed among these distances:
735 50 0.07
737 2 0.00
738 3 0.00
739 6 0.01
740 2 0.00
741 4 0.01
742 209 0.29
743 268 0.37
744 10 0.01
745 155 0.22
746 1 0.00
747 6 0.01
748 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (735 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAATGAGCGGGCGGGCCCTCACG
TCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTGCCATGCCAAAGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGC
CTTCATGTGAAGTTTCAAGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTA
CGGTTCGAGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTAGCCCCAAACTTGGTAAACATAATC
CTTGTATTTTTGTTAGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTAGTAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAATTCTCAAGGTTTGATGAAGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTACACACACCCCCCGCCCCCCCAATCATCAGAAC
ACCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGGGCAAAAAAAATGC
GGCACCAGCACATGCTCGAGCCGAGCATGTACACCCGCAACCCTCTGTCCGATCCGATCTTAGAC
TGGGAATGAACTCCATATGC
Found at i:1919949 original size:25 final size:26
Alignment explanation
Indices: 1919909--1919960 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
1919899 CCGGTCCAAT
*
1919909 CTTAGACTGTGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1919935 CTTAGA-TGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1919960 C
1 C
1919961 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 18 0.75
26 6 0.25
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1920547 original size:899 final size:898
Alignment explanation
Indices: 1917455--1922308 Score: 6228
Period size: 903 Copynumber: 5.4 Consensus size: 898
1917445 CCGGCCAAAG
* * *
1917455 GGGCGGGTGGGCACTACGTCGACCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
1917520 GGTGGGTTTAAGGTTTAGGCACATCTTCATATTT-TGGCCATGCCAAAGCCATTTTTATGGCTTG
66 GGT--G-----GGTTTAGGCACATCTTCATATTTCT-ACCATGCCAATGCCATTTTTATGGCTTG
* *
1917584 AAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
123 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * *
1917649 TTTTTCATGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGATTTT
188 TTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTT-AAATTTTTTCAGAAGGAGTTT
* * * *
1917714 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTATTTCGCATGCGCAAAAAATTTCAGCTA
252 TGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-GTTGGCATGCACAAAAAAATTCAGCTA
* *
1917779 AAAACTGGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAA
316 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
1917844 T-GCATACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGT
381 TGGC-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
* *
1917908 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTGCACA
445 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
1917973 CACCCCCCCCGCCCCCCCAATCGTCGGAACCCTAATGCCGCCAGTCAGGTTCTCCGACGATGCTC
510 CA-CCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCAG-CGATGCTC
* * * * * *
1918038 TAGCGATGGTGGCCCGGGC-AAAAAAAATGCGGT-ACCAGCACATGCCTGAGCCGAGCATGTACG
573 CA-CGATGGTGGCCCGGGCAAAAAAAAATAC-GTCACCAGCACAT-CCCGAGCCCAGCATGTGCA
** * * *
1918101 CCCGTAACCCTC-GATCCGATCCGATCTTAGGCTGGGAATGAACTCCATATGCTTAGACTAGGAA
635 CCCACAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAA
* * * * *
1918165 TGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCCCTCAGTCGACCAGAGGGAC
699 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * *
1918230 AGGATGTGCAAGCCGGGGATCTG-TCGAGTCCCCCTCAGCATGCTACTGATCCTGCTGCCGCAAC
764 AGGATGCGCAAGCCGGGGATC-GACCGGGTCCCCCTCAGCATGCTGCTGATCCTGCTGCCACAAC
* * ** * * * * *
1918294 CCT-TGATCCGGTCTGATCTTAGACTAGGAACAAACTTCGTATGCCTAAGCCATCCAATGAAACG
828 CCTCAG-TCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACA
1918358 AGCGGGC
892 AGCGGGC
** * * *
1918365 GCACGGGCGGGCACTACACCGGCCAGAGAGGCGGGATGCACAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*** * *
1918430 GGTGGGTTTATTTACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTAA
66 GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
1918495 TACAATGTTCCCTTAAGTCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAC
131 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
** * * *
1918560 GATTTTTGAAA-TGTTTTACGGTTCGGGATTTGTTTAAAATTTTTTTAGAAGGAGTGTTGGCCCC
196 GATTTTTGAAACT-TTTTACGGTTCAAGATTT-TTTTAAATTTTTTCAGAAGGAGTTTTGGCCCC
*
1918624 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAACTCG
259 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
1918689 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCCACT
324 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
1918754 GGCAGCAAACCTGGAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATAAGG
389 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* *
1918819 GATAGGGAGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCC-
454 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* *
1918883 G-CCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTAC-C-CCG--G-----CGATGGTGG
519 GCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCAGCGATGCTCCACGATGGTGG
* * ** * * * * *
1918938 CCTGCGTGAAAAAAAATACGGCACCAGCACATTCTCGAGCCCAACATGTGAACCCACAACCCTCG
584 CCCGGGCAAAAAAAAATACGTCACCAGCACA-TCCCGAGCCCAGCATGTGCACCCACAACCCTCA
* * * * ** * *
1919003 GTCTGGTCGGATCTTATACTTGGAACAAACTCCGTATGCTTA-ATCTGGGAAGGAACTCCGTATG
648 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGA-CTGGGAATGAACTCCGTATG
* * * * * *
1919067 CCTAAGTCAACTCACGAAACGAGAGTGCGGGCACTGAGCCGGCCAGAGGGGCAGGATGCACAAGG
712 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * ** * * * *
1919132 CGAGGATCGACCGGGTCCCCCTCAGCGTGCTGCCAATCCTACTACCACAACCCTCAGTTTGGTCC
777 CGGGGATCGACCGGGTCCCCCTCAGCATGCTGCTGATCCTGCTGCCACAACCCTCAGTCTGGTCT
* * *
1919197 GATCTTAGACT-GGAAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGTGGGC
842 GATCTTAGACTAGG-AATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGC
* * * *
1919254 GGGCGGGCGGGCACTACGTCGGCCAGAGAGGCAGGATGCGCAAGCCGTGG---G-T----CGGTA
1 GGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
1919311 CGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
66 GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
1919376 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAT
131 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
1919441 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCAGATGGAGTTTTGGCCCCA
196 GATTTTTGAAACTTTTTACGGTTCAAGATTTTTT-TAAATTTTTTCAGAAGGAGTTTTGGCCCCA
* * * * *
1919506 AACTTGGGAGACATGATCGTTGTATTTTTTTTGGCATGCTCAAAAAAATTCGGCTAAAAACTCGA
260 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
1919571 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
325 AGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
1919636 GCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
390 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
* * * * *
1919701 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATTGCACATGATGTGTGCACGCCCCACCG
455 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCG
* * *
1919766 GCCCCCCCAATCGTCGAAACCCCAATGCCGTCGGTCAAGTTCTCCAGCGATGCTCCGACGATGGT
519 GCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT-CAGCGATGCTCC-ACGATGGT
* ** *
1919831 GGCTCGGGTGAAAAAAAATACGTCACCAGCACATCCCGACCCCAGCATGTGCACCCACAACCCTC
582 GGCCCGGGCAAAAAAAAATACGTCACCAGCACATCCCGAGCCCAGCATGTGCACCCACAACCCTC
* *
1919896 AGTCCGGTCCAATCTTAGACTGTGAATGAACTCCATATGCTTAGA-TGGGAATGAACTCCGTATG
647 AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
1919960 CCTAAGTCAACGCACGAAATGAGCGTGCGGGCTCTTAGCCGGCCAAAGGGGCAGGATGTGCGAGC
712 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * * * * * * *
1920025 TGGGGATCGACCAGGTCCACCTCTGCGTGTTGCTGATCCTGCTGCCGCAACCCTCAGTCTGGTTT
777 CGGGGATCGACCGGGTCCCCCTCAGCATGCTGCTGATCCTGCTGCCACAACCCTCAGTCTGGTCT
*
1920090 GATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCGGGC
842 GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGC
** * * *
1920147 GGGTAGGCGGGCACTACGTCGACC-GAGAGGCGGGATGCGTAAGCTGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
1920211 GGTGGGTTTAGGCACATCTTTATATTTTTTCCTTGCCAATGCCATTTTTATGGCTTGTAAATTCA
66 GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
1920276 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCAT
131 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
1920341 GATTTTTGAAACTTTTTATGGTTCAAGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAA
196 GATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* ** * * * * *
1920406 ACTTAGTAGATGTGGTACTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTGGAG
261 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
1920471 GTGTACAGGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGATACTGG
326 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
1920536 CAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
391 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* * *
1920601 TACGGGGCCAACATAAGGG-CAAGTACCAGCACCCATCGCACATCAAGTGCGCACACCCACCCCG
456 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCG
* * * * * * *
1920665 G-CACCCCAATCGTCGAAACCCAAAAGCCGTCGGTCAGGATCTCTGGCGATGCTCCAGCGATGGT
519 GCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC-AGCGATGCTCCA-CGATGGT
* * * * *
1920729 GGCCCGGCCAAAAAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCACCTACAACCCTC
582 GGCCCGGGCAAAAAAAAATACGTCACCAGCACATCCCGAGCCCAGCATGTGCACCCACAACCCTC
* * * * *
1920794 AGTCCGGTCTGATCTTAGCCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGGACTCTGTATG
647 AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
* *
1920859 CCTAAGTCAACCCACGAAAGGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
712 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
** * * * * * * * * **
1920924 CAAGGATAGGCTGGGTCCCCCTTAGCATACTG-TCGATCTTGTTGCCACAACCCTCGGTCCAGTC
777 CGGGGATCGACCGGGTCCCCCTCAGCATGCTGCT-GATCCTGCTGCCACAACCCTCAGTCTGGTC
*
1920988 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAAAGGGCGGGC
841 TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--AA--GCGGGC
* * * * * * *
1921050 GGGCGGGCGAGCGCTACGCCGACCAGAGAGACGGGATGTGCAA-CCTATGGATCGATATGTTGGT
1 GGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCC-GTGGATCGATAGGGTGGT
* *
1921114 AGGTGGGTTTAGGCACATCTTCATATTCCTACCATGCAAATGCCATTTTTATGGCTTGTAAATTC
65 AGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
1921179 A-ACAATGGTTCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATGTTTCA
130 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** * * *
1921243 CGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGCATTTTTTGCCCC
195 CGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTT-AAATTTTTTCAGAAGGAGTTTTGGCCCC
* * * * *
1921308 AAACTTGGTAAACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAGTAG
259 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
1921373 AAGTTTACAGGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACT
324 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
1921437 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGG
389 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
* * * * * *
1921502 GAGAGGGGGCCAATATAAGGGCCAACTACCAGCACCCGTCTCACTTCATGTGCGCACACCCCCTG
454 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* *
1921567 GCCCCCCCAATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCT-A-CG--G-T--A--ATGGTGG
519 GCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCAGCGATGCTCCACGATGGTGG
* * **
1921623 CCCGGGCAAAAAAAAATAAGGT-ACCAGCGCATGCCCGAGCCCAGCATGTGCACCCGTAACCCTC
584 CCCGGGCAAAAAAAAAT-ACGTCACCAGCACAT-CCCGAGCCCAGCATGTGCACCCACAACCCTC
* * *
1921687 AGTCCAGTCCGATCTTAGACTGGGAAAGAACACCATATGCTTAGACTGGGAATGAACTCCGTATG
647 AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
* * * *
1921752 CCTAAATCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACA-GATGCACAAGT
712 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * * * ** * * **
1921816 CGGGGATC-AGTCGGGTCCCCTTCAGTATGCTACTGATCCTGCCACCACAACCATCGGTCTAAT-
777 CGGGGATCGA-CCGGGTCCCCCTCAGCATGCTGCTGATCCTGCTGCCACAACCCTCAGTCTGGTC
* * *
1921879 TCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTGGGC
841 T-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGC
* * * * * * *
1921938 AGTCGGGAGAGCACTACGCCGGCCAGAGAGGCGGGATACACAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * * *
1922003 GGTGGGTTTAGGAACATCTTCATATTTTTTCCGTGCCAACGCCATTTTTATGGCTTGTAAATTCA
66 GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
1922068 -ACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGCCAGGACGACTCGTTTTCTATTTTTCAC
131 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
1922132 GATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTCAAAAGGAGTTTTGACCCCAA
196 GATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
* * *
1922197 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTTAGCTAAAAACTCGAA
261 ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
1922262 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
326 GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
1922309 TACATCATGT
Statistics
Matches: 3440, Mismatches: 444, Indels: 142
0.85 0.11 0.04
Matches are distributed among these distances:
880 3 0.00
881 416 0.12
882 3 0.00
883 1 0.00
884 36 0.01
885 1 0.00
886 2 0.00
887 119 0.03
888 233 0.07
889 285 0.08
890 5 0.00
891 1 0.00
892 153 0.04
893 330 0.10
894 64 0.02
895 39 0.01
896 3 0.00
897 3 0.00
898 182 0.05
899 430 0.12
900 162 0.05
901 8 0.00
902 208 0.06
903 452 0.13
904 240 0.07
908 1 0.00
910 60 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
CCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCAGCGATGCTCCACGATGGTGGCC
CGGGCAAAAAAAAATACGTCACCAGCACATCCCGAGCCCAGCATGTGCACCCACAACCCTCAGTC
CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG
GATCGACCGGGTCCCCCTCAGCATGCTGCTGATCCTGCTGCCACAACCCTCAGTCTGGTCTGATC
TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGC
Found at i:1920836 original size:26 final size:26
Alignment explanation
Indices: 1920807--1920859 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1920797 CCGGTCTGAT
*
1920807 CTTAGCCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
1920833 CTTAGACTGGGAATGGACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1920859 C
1 C
1920860 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1921736 original size:26 final size:26
Alignment explanation
Indices: 1921700--1921752 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1921690 CCAGTCCGAT
1921700 CTTAGACTGGGAAAGAACACCATATG
1 CTTAGACTGGGAAAGAACACCATATG
* * *
1921726 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACACCATATG
1921752 C
1 C
1921753 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACACCATATG
Found at i:1924546 original size:374 final size:373
Alignment explanation
Indices: 1923852--1924583 Score: 1035
Period size: 374 Copynumber: 2.0 Consensus size: 373
1923842 AACTTTGTGG
* * *
1923852 ACGTGATCCTTGTATTTTTTTGAGCATGCACAAAAAAATTCAGCTAAAAAGTAGAAATGTAAAGG
1 ACGTGATCCTTGTATTTTTGTGAGCATGCACAAAAAAATTCAACTAAAAACTAGAAATGTAAAGG
* *
1923917 ATTTTGTGACCGTTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCATCAAACC
66 ATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
1923982 TATAAAATCTCAAATGTACTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
131 TATAAAATCTCAAATGTACTTTAAGGAGGTGTGAGTTCTCGAGGTTTAATGAGGGAGAGGGGGCC
* *
1924047 AATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACATACCGCCACCCCCCCAAT
196 AATATAAGGGCCAAGTACCAATACCCATCACACATCATGTGCGCACATACCGCCACCCCCCCAAT
* *
1924112 CGCCGGAACCCCAACATCGTCGGTCAGGTTCTCCAACGATGGTGGCCCGAGTGAAAAAAAATATG
261 CGCCGGAACCCCAACATCGTCGGTCAGGTTCTCCAACGATGGTGGCCCGAGGGAAAAAAAATACG
* ** *
1924177 GCACCAGCACATTCTTGAGCCCAGCATGTGCACCAGCAACCCTCGGTGT
326 GCA-CAGCACATGCCCGAGCCCAGAATGTGCACCAGCAACCCTCGGTGT
* * * * *
1924226 ACGTGATCCTTGTATTTTTGTGGGCATGCATAAAAAAATTCAACTAAATACTCA-AAGTGTACAG
1 ACGTGATCCTTGTATTTTTGTGAGCATGCACAAAAAAATTCAACTAAAAACT-AGAAATGTAAAG
* **
1924290 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTTCTACTAGG-AGCAAA
65 GATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACT-GGCAGCAAA
* *
1924354 TCTGTAAAATCTCAAATGCT-CTTTAAGGAGGTGTGAGTTCTCGAGGTTTAATGAGGGAGAGGGG
129 CCTATAAAATCTCAAATG-TACTTTAAGGAGGTGTGAGTTCTCGAGGTTTAATGAGGGAGAGGGG
* * * * *
1924418 GCCAATATAAGGGCCAAGTACTAATTCCCATCACTCATCATGTGCGCACA-CCCGCCCCGCCCCC
193 GCCAATATAAGGGCCAAGTACCAATACCCATCACACATCATGTGCGCACATACCG--CCACCCCC
* * ** *
1924482 CCAATCTCCTGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGGTGG-CC-AGGGAGAAAAA
256 CCAATCGCCGGAACCCCAACATCGTCGGTCAGGTTCTCCAACGATGGTGGCCCGAGGGA-AAAAA
1924545 AATACGGCACAGCACATGCCCGAGCCCAGAATGTGCACC
320 AATACGGCACAGCACATGCCCGAGCCCAGAATGTGCACC
1924584 CGTAACCTTC
Statistics
Matches: 316, Mismatches: 36, Indels: 13
0.87 0.10 0.04
Matches are distributed among these distances:
373 33 0.10
374 227 0.72
375 56 0.18
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (373 bp):
ACGTGATCCTTGTATTTTTGTGAGCATGCACAAAAAAATTCAACTAAAAACTAGAAATGTAAAGG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACACTTTAATGGCTACTGGCAGCAAACC
TATAAAATCTCAAATGTACTTTAAGGAGGTGTGAGTTCTCGAGGTTTAATGAGGGAGAGGGGGCC
AATATAAGGGCCAAGTACCAATACCCATCACACATCATGTGCGCACATACCGCCACCCCCCCAAT
CGCCGGAACCCCAACATCGTCGGTCAGGTTCTCCAACGATGGTGGCCCGAGGGAAAAAAAATACG
GCACAGCACATGCCCGAGCCCAGAATGTGCACCAGCAACCCTCGGTGT
Found at i:1924636 original size:26 final size:26
Alignment explanation
Indices: 1924607--1924659 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1924597 TCGATCTGAT
*
1924607 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1924633 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1924659 C
1 C
1924660 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1925541 original size:26 final size:26
Alignment explanation
Indices: 1925505--1925557 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1925495 CCAATCTGAT
1925505 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1925531 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1925557 C
1 C
1925558 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1926398 original size:26 final size:26
Alignment explanation
Indices: 1926362--1926414 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1926352 CTGGTCTGAT
*
1926362 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1926388 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1926414 C
1 C
1926415 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1926867 original size:5 final size:5
Alignment explanation
Indices: 1926857--1926945 Score: 78
Period size: 5 Copynumber: 17.6 Consensus size: 5
1926847 CCTTTTTACC
* *
1926857 TTTAT TTTAT TTTATT TTTATT TTTGT TTTAAT TTT-C TTTAT TTTAT
1 TTTAT TTTAT TTTA-T TTTA-T TTTAT TTT-AT TTTAT TTTAT TTTAT
*
1926904 TTT-T TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT TTTAT TTT
1 TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1926946 CTTTAAATAA
Statistics
Matches: 70, Mismatches: 6, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
3 3 0.04
4 7 0.10
5 40 0.57
6 16 0.23
7 4 0.06
ACGTcount: A:0.16, C:0.03, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTAT
Found at i:1926874 original size:22 final size:22
Alignment explanation
Indices: 1926849--1926935 Score: 90
Period size: 22 Copynumber: 4.1 Consensus size: 22
1926839 TTTAGTATCC
*
1926849 TTTTTACCTTTATTTTATTTTA
1 TTTTTACTTTTATTTTATTTTA
* * *
1926871 TTTTTATTTTTGTTTTAATTT-
1 TTTTTACTTTTATTTTATTTTA
*
1926892 TCTTTA-TTTTATTTT-TTTTA
1 TTTTTACTTTTATTTTATTTTA
* *
1926912 TTTTCACTTTTATTTTGTTTTA
1 TTTTTACTTTTATTTTATTTTA
1926934 TT
1 TT
1926936 ATTTTATTTT
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
19 3 0.06
20 12 0.23
21 14 0.26
22 24 0.45
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.77
Consensus pattern (22 bp):
TTTTTACTTTTATTTTATTTTA
Found at i:1926937 original size:13 final size:13
Alignment explanation
Indices: 1926858--1926945 Score: 53
Period size: 12 Copynumber: 6.9 Consensus size: 13
1926848 CTTTTTACCT
1926858 TTATTTTATTTTA
1 TTATTTTATTTTA
1926871 -T-TTTTATTTT-
1 TTATTTTATTTTA
* *
1926881 TGT-TTTAATTTTCT
1 T-TATTTTATTTT-A
*
1926895 TTATTTTATTTTTT
1 TTATTTTA-TTTTA
*
1926909 TTATTTTCA-CTT-
1 TTATTTT-ATTTTA
*
1926921 TTATTTTGTTTTA
1 TTATTTTATTTTA
1926934 TTATTTTATTTT
1 TTATTTTATTTT
1926946 CTTTAAATAA
Statistics
Matches: 60, Mismatches: 6, Indels: 18
0.71 0.07 0.21
Matches are distributed among these distances:
11 9 0.15
12 19 0.32
13 14 0.23
14 13 0.22
15 5 0.08
ACGTcount: A:0.16, C:0.03, G:0.02, T:0.78
Consensus pattern (13 bp):
TTATTTTATTTTA
Found at i:1927041 original size:59 final size:60
Alignment explanation
Indices: 1926962--1927302 Score: 467
Period size: 59 Copynumber: 5.7 Consensus size: 60
1926952 ATAAAAATAA
* * *
1926962 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-C
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
* * *
1927020 AAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC
1 AAAAAAA-GATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
* * * *
1927081 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCA
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
* *
1927140 AAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
* *
1927200 --AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATGAAAATTTCC
1 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
* *
1927258 AAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 ---AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
1927303 CTACGCAAGA
Statistics
Matches: 250, Mismatches: 24, Indels: 13
0.87 0.08 0.05
Matches are distributed among these distances:
58 61 0.24
59 91 0.36
60 51 0.20
61 8 0.03
63 39 0.16
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.33
Consensus pattern (60 bp):
AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
Found at i:1927092 original size:119 final size:119
Alignment explanation
Indices: 1926962--1927302 Score: 569
Period size: 119 Copynumber: 2.8 Consensus size: 119
1926952 ATAAAAATAA
1926962 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
* *
1927027 GGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTTTCC
66 AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
1927081 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
1927146 AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
66 AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
* *
1927200 --AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATGAAAATTTCCAAAAA
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTT-C--AAA
** *
1927263 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
62 AAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
1927303 CTACGCAAGA
Statistics
Matches: 211, Mismatches: 7, Indels: 6
0.94 0.03 0.03
Matches are distributed among these distances:
117 46 0.22
118 7 0.03
119 118 0.56
121 40 0.19
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.33
Consensus pattern (119 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAA
AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
Found at i:1935552 original size:26 final size:26
Alignment explanation
Indices: 1935516--1935566 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1935506 CCGATCCGAT
*
1935516 CTTAGACTGGGAATGAACTCTGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
1935542 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
1935567 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:1936442 original size:26 final size:26
Alignment explanation
Indices: 1936413--1936463 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1936403 GGTCGGATCC
*
1936413 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
1936439 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
1936464 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:1937342 original size:26 final size:26
Alignment explanation
Indices: 1937304--1937356 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1937294 CTGGTCTGAT
1937304 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
1937330 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
1937356 C
1 C
1937357 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:1940015 original size:26 final size:26
Alignment explanation
Indices: 1939986--1940036 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1939976 GCGGTCCGAT
1939986 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
1940012 CTTAGACTGGGTATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
1940037 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1940619 original size:899 final size:899
Alignment explanation
Indices: 1935091--1940894 Score: 7716
Period size: 900 Copynumber: 6.5 Consensus size: 899
1935081 GAGGTGTATG
**
1935091 TTCAGAATAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
1 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* *
1935156 AAAAATTCAGCTAAAAACTCGAAATGTACAGGATTTTGTGACCATTTGAAAAAAGTTTCCCCATT
66 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
1935221 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
131 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
1935286 AGTTCTCGAGGTTTGATGAGGCG-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
196 AGTTCTCGAGGTTTGATGAGG-GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * *
1935350 CATCATGTGTGCACACACCCCC-CCACCCCCTAAGCGTCGAAACCCCAATGCCACCAGTCAGGTT
260 CATCATG-G-GCGCACACCCCCTGC-CCCCC-AATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** * * * * * * *
1935414 CTCCGGTGATGCTCCGACGATGGTGGCCCGGGCGAAAAAAATGTGGCACCACCCCAAGCCAGAGC
321 CTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGC
** * * * * * *
1935479 CCAGCATGTGCACCCGTAACCCTTGGACCGATCCGATCTTAGACTGGGAATGAACTCTGTATCCT
386 CCAGCATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
1935544 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGATCGTACGGGTGCTCAGTCG
451 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * ** * * *
1935609 ACTAAAGGGGCAGGATGCGTAAGTC-GGGGATCGATCGGGTCCCTATCTA-CGTGCTGCCAATCT
516 CCTAGAGGGGCAGGATGCGCAAG-CAGGGGATCGGTCGGGTCCCCCTC-AGCATGCTACCAATCC
* * * ** * * *
1935672 TGCTACCACAACCATCGGTCCGGTATGATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCAA
579 TACTACCACAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * * *
1935737 CAGACGAAATGAGCGGGCGG--GCG-G-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
644 CCGACGAAACAAACGGGCGGACGGGAGAGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCG
* **
1935798 TGGATCGATAGGGTGGTAGGTGGGTTTA-GTACATCTTCATATTTCTGCTGTGCCAATGCCATTT
709 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
1935862 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
774 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* *
1935927 TCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTC-AGGATCTTTTTAAAATTTT
839 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTT
* *
1935988 TTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
1 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
1936053 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTCCCCATT
66 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
** * * *
1936118 TCAGTTACTTTAATGGCTACCGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
131 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
1936183 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
196 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
1936248 ATCTTGGGCGCACACCCCCTGCCCCCCGAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
261 ATCATGGGCGCACACCCCCTGCCCCCC-AATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
1936313 GACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
325 GACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * * * *
1936378 CATGTGCACCCGTAACCCTCGATCTGGTCGGATCCTAGACTGGGAATGAACTCTGTATGCTTAGA
390 CATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
1936443 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGCGTGCGGGCACTCAGCCGGCTA
455 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCTA
* * * *
1936508 GAGGGGCAGGATGCGCAAGCTGGGGATCGGTTGGGTCCCCCTCTGCATGCTACCGATCCTACTAC
520 GAGGGGCAGGATGCGCAAGCAGGGGATCGGTCGGGTCCCCCTCAGCATGCTACCAATCCTACTAC
** *
1936573 CACAACCCTTGGTCCAATCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA---TCG
585 CACAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * * * *
1936634 ATA-AAACGAGCGGACGGGTAG-GTACTACACCGGCTAGAGAGGTGGGATGCGCAAGCCGTGAAT
650 AAACAAACGGGCGGACGGG-AGAGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
*
1936697 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCATGCCAATGCCATTTTTATG
714 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
1936762 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
779 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
*
1936827 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTT
844 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
* * * * * * **
1936883 TTCTGAAGGACTTTTGGCCCTAAACTTGGTAGACATGATTCTTGTATTTTTCTTGGCATGCATGA
1 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
1936948 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
66 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
1937013 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTG
131 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
** * *
1937078 AGTTCTAAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCACAC
196 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * ** * * *
1937143 ATCATGTGCACAC-CCCCCGGCCCCCCAATCACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCT
261 ATCATGGGCGCACACCCCCTGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
1937207 ACAATGCTCCGGAGATGCTGCCCCGAGCGAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
326 ACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
1937272 ATGTGCACCCTCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGAT
391 ATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
** * * *
1937337 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAATGAGCGTGCAGGCGCTCAACCGGCC-A
456 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCTA
* * * * * * *
1937401 GAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCAACGTGTTACCGATCCTACTGC
520 GAGGGGCAGGATGCGCAAGCAGGGGATCGGTCGGGTCCCCCTCAGCATGCTACCAATCCTACTAC
* ** ** * * *
1937466 CACAACCCTTACCCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGCCAACCAATG
585 CACAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
1937531 AAACGAGCGGGCGGACGGGCA-AGCACTACGCCAGCCAAAG-GGACGGGATGCGCAAGCCATGGA
650 AAACAAACGGGCGGACGGG-AGAGCACTACGCCAGCCAGAGAGG-CGGGATGCGCAAGCCGTGGA
* * * * **
1937594 TTGATAGGGTGGTTGGTGGGTTTACGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTAT
713 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
*
1937659 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCCT
778 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
1937724 TTTCAATTTTTCATGATTTTCGAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTT
843 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
* * *
1937781 TTCAAAAGGAGTTTTGGCTCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
1 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
1937846 AACAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
66 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
1937911 TCAGTCACTTTAACGGCTACTGGCAGCAAACTTGTAAAATCGCAAATGCTCTTTAAGGGGGTGTG
131 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
1937976 AGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-CTGCA
196 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCA
* * * * *
1938040 CATCATGTGCGCACACCCCCTCGGCCCCCCAATAGCCGGAGCCCCAATGCCGCAGGTCAGGTTCT
260 CATCATGGGCGCACACCCCCT--GCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * * ** *
1938105 TC-ACGATGCTCTGGCGATGATGGCCCGGGCGAAAAAAAATACGGTACCAATAGATGCCCGAGCC
323 CCGACGATGCTCCGGCGATGGTGCCCCGGGCG-AAAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * *
1938169 TAGCATGTGCACTCACAGCCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTT
387 CAGCATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * ** * *
1938234 AGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCGTGAAACAAGCGTGCGAGCGCTCAGCCGC
452 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGC
* * * * *
1938299 CCAGAGGGGCA-GATGCGCAAGTAGGGGATCGGTCAGGTCCCCCTCAGCATGCTGA-CAATCTTG
517 CTAGAGGGGCAGGATGCGCAAGCAGGGGATCGGTCGGGTCCCCCTCAGCATGCT-ACCAATCCTA
*** * ** *
1938362 CTACTGTAACCCTCAGTTCAATCCAATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACC
581 CTACCACAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
1938427 GACGAAACAAGCGGGCGGGCAGGCGGGCACTATGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTG
646 GACGAAACAAACGGGCGGACGGGAGAGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTG
* *
1938492 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCCAATGCCTTTTTT
711 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* * ** * *
1938557 ATGGCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATTACAAGACGATTT
776 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* *
1938622 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTTAAAATTTT
841 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
* * * *
1938681 TTCAGAATGAGTTTTGTCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTTGCATGCACAA
1 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
1938746 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAACGTGTCCCCATT
66 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
1938811 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTG
131 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
1938876 AGTTCTCAAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
196 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
1938941 ATCCTGGGCACACACCCCCTTCCCCCCGAATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCC
261 ATCATGGGCGCACACCCCCTGCCCCCC-AATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * *
1939006 TG-CGATGCTCCGATGATGGTGCCCCGAGCGAAAAAAATGCGGCACCAGCACATGCTCGAGCCTA
325 -GACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
1939070 GCATGTGCACTCATAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCTTCG
389 GCATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* *
1939135 ACTGGGAATGAACTCCGTATGCCGAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCC
454 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCC
* * * * *
1939200 -AGAGGGGTAGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTA-CGTGCTGCCAATCCTAC
518 TAGAGGGGCAGGATGCGCAAGCAGGGGATCGGTCGGGTCCCCCTC-AGCATGCTACCAATCCTAC
* *
1939263 TACCACAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC-A---
582 TACCACAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * * *
1939324 ACG-----TA----C-TAC---A-AGCACTACGCC-GACTAGAGAGGCAGGATACGTAGGCCGTG
647 ACGAAACAAACGGGCGGACGGGAGAGCACTACGCCAG-CCAGAGAGGCGGGATGCGCAAGCCGTG
* *
1939374 GATCGATAAGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCCATGCCAATGCCATTTTT
711 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* * * * *
1939439 AAGGCTTTTAAATTCATAAAATGGTCCCTTCAGCCCTT-ATGTGAAGTTTCATGGCAAGACGACC
776 ATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CCTTCATGTGAAGTTTCATGGCAAGACGACT
* *
1939503 CGTTTTCTAATTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTT
840 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
* * * * * * *
1939563 TTCTGAGGGACTTTTGGCCTCAAACTTGGTAGATGTGATTCTTGTATTTTTCTTGGCATGCACAA
1 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
1939628 AAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
66 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
1939693 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAAGGGGTGTG
131 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
1939758 AGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCACAC
196 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
1939823 ATCCTGGGCGCACACCCCCTGCCCCCCGAATCGTCGGAACCCTAGTGCCGCCGGTCAGGTTCTCC
261 ATCATGGGCGCACACCCCCTGCCCCCC-AATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
1939888 GAAGATGCTCCGGCGATGGTGCCCCAGGCAAAAAAAATGCGGCACCAGTACATGCTCGAGCCCAA
325 GACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
1939953 CATGTGCACCCACAACCCTCGGTGC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
390 CATGTGCACCCACAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
1940017 ACTGGGTATGAACTCCGTATACCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGCCT
454 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCT
* * * * **
1940082 AGAGAGGCA-GATGCGCAAACAGGCGATCGGTCGGGTCCCCCTCAGCATGCTACCAATCTTGTTA
519 AGAGGGGCAGGATGCGCAAGCAGGGGATCGGTCGGGTCCCCCTCAGCATGCTACCAATCCTACTA
* ** ** **
1940146 CCACAACCCTCAGTTCGTTCAAATCTTAGACTGGGGCTGAACTCCGTATGCCTAAGCCAACCGAC
584 CCACAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * *
1940211 GAAACAAACGGGTGGGCGGGAGAGCACTATGCCAACCAGAGAGGCAGGATGCGTAAGCCGTGGAT
649 GAAACAAACGGGCGGACGGGAGAGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* *
1940276 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCCAATGCCTTTTTTATG
714 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* * ** * *
1940341 GCTTGTAAATTCATACAGTGGTCCCTTGAGCCTTCATGTGAAGTTTCATTACAAGACGATTTGTT
779 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
*
1940406 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
844 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
* * * * *
1940462 TTCAAAAGGAGTTTTGTCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
1 TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
1940527 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAACGTGTCCCCATT
66 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
1940592 TCAAACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCGAACGCTCTTTATGGGGGTGTG
131 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
1940657 AGTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCGATCGCAC
196 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * * *
1940722 ATCATCTGCGCATACCCCCCGGCCCCGCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-
261 ATCATGGGCGCACA-CCCCCTGCCCC-CCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
1940786 C--CGA-----C--C-ATGGTGGCCCGGG-GAAAAAAAACTGCGGCACCAGCACATGCCTGAGCC
324 CGACGATGCTCCGGCGATGGTGCCCCGGGCG-AAAAAAA-TGCGGCACCAGCACATGCCCGAGCC
* ** * * * **
1940840 CAGCATCTGCACCCGTAACCCTCTGTCCGATCCGATCTTAGACTACGAATGAACT
387 CAGCATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT
1940895 TCGCATGCCT
Statistics
Matches: 4317, Mismatches: 524, Indels: 139
0.87 0.11 0.03
Matches are distributed among these distances:
880 1 0.00
881 98 0.02
882 672 0.16
883 5 0.00
885 3 0.00
886 1 0.00
887 1 0.00
889 19 0.00
890 76 0.02
891 4 0.00
892 3 0.00
893 288 0.07
894 126 0.03
895 701 0.16
896 6 0.00
897 258 0.06
898 478 0.11
899 632 0.15
900 753 0.17
901 192 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
TTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGGGCGCACACCCCCTGCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
ACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCACCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCTAG
AGGGGCAGGATGCGCAAGCAGGGGATCGGTCGGGTCCCCCTCAGCATGCTACCAATCCTACTACC
ACAACCCTCAGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACAAACGGGCGGACGGGAGAGCACTACGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
Found at i:1941630 original size:25 final size:26
Alignment explanation
Indices: 1941591--1941639 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
1941581 CAGATCGATT
1941591 CTTAGACTGGGAATGAACTCCTAATG
1 CTTAGACTGGGAATGAACTCCTAATG
1941617 CTTAGAC-GGGAATGAACTCCTAA
1 CTTAGACTGGGAATGAACTCCTAA
1941640 CAGTAAGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCTAATG
Found at i:1942518 original size:26 final size:25
Alignment explanation
Indices: 1942475--1942523 Score: 80
Period size: 26 Copynumber: 1.9 Consensus size: 25
1942465 GTTCGATCTC
*
1942475 AGACTGGGAATAACTCCGTATGCTT
1 AGACTGGAAATAACTCCGTATGCTT
1942500 AGACTGGAAATGAACTCCGTATGC
1 AGACTGGAAAT-AACTCCGTATGC
1942524 CTAACTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (25 bp):
AGACTGGAAATAACTCCGTATGCTT
Found at i:1943400 original size:26 final size:26
Alignment explanation
Indices: 1943361--1943413 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1943351 CCAGTCCGAT
* * *
1943361 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAGCGAATGAACTCCGTATG
1943387 CTTAGACAGCGAATGAACTCCGTATG
1 CTTAGACAGCGAATGAACTCCGTATG
1943413 C
1 C
1943414 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGCGAATGAACTCCGTATG
Found at i:1944274 original size:885 final size:888
Alignment explanation
Indices: 1940874--1949480 Score: 10094
Period size: 878 Copynumber: 9.7 Consensus size: 888
1940864 GTCCGATCCG
** * * * * *
1940874 ATCTTAGACTACGAATGAACTTCGCATGCCTAAGCCAACCGACGAAACAAGTGGGCGAGAGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GCGGGCG
* * * *
1940939 GGCACTACGCCTGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTTGGTTT
65 GGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
** * * * * *
1941004 ATTCATATCTTCATATTTTTTCTATGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* **
1941069 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* **
1941134 AACTTTTTACGATTC-AGGATTTTTTTTTAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
260 AACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAAGGAG-TTTGG-CCCAAACTTGGT
* * *
1941198 AGACGTGATCCTTGTAATTTTT-TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGGAGTGTAC
322 AGACATGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
1941262 AGGATTTTTGTGACCATATGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTTACTGGCAGC
386 AGGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC-TACTGGCAGC
* * *
1941326 -AACCTTATAAAATCTCAAATGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAA
449 AAACC-TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-A
* *
1941390 GGGGGCCAATATAAGGGGCATAAGTACCAGCACCCATTGCGCACATACATGTGTGCACACCCCCC
512 GGGGGCCAATATAA-GGGC-CAAGTACCAGCACCCA-T-CGCACAT-CATGTGCGCACA-CCCCC
* * * * **
1941455 CGGCCCCCCTTAATTGCCTGGAAGCCGCTAATGCCG-CGGTCAGGTTCT-CTACGATGG-GTGCC
571 C-GCCCCCC-CAATCGCCCGGAA-CC-CCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTG-GCC
* * * *
1941517 CCGAGGAAAAAAAATAC-GCACTTAGCACATG-CCGAG--CAGCAATGTGCA-CCGCAACACTCG
631 ACGAGGAAAAAAAATGCGGCAC-CAGCACATGCCCGAGCCCAGC-ATGTGCACCCGCAACCCTCG
*
1941577 TATCCAGATC-GATTCTTAGACTGGGAATGAACTCC-TAATGCTTAGAC-GGGAATGAACTCC-T
694 -GTCCAG-TCTGA-TCTTAGACTGGGAATGAACTCCGT-ATGCTTAGACTGGGAATGAACTCCGT
* * * * * * * *
1941638 A-ACAGTAAGTCAACCCATG-AACGA-CGTACAGGCG-TCTA----GCCAGAGGGACAGAATGTG
755 ATGC-CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC-AGCCGGCCAGAGGGGCAGGATGCG
* * * **
1941695 CAAGCCAGGGATC-ATC-GGTCCCCCTCAG-GTGCTATCGATCCTGCTG-AGCCACAATCA-TC-
818 CAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCT
1941754 -GTCTA
883 GGTCTA
* * * * *
1941759 ATCTTAGACT-GGAATGAACTTCGTATGCC-AAGCCAA-TGACAAAAC-TGCGGTAGCAGAGTGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG--GC-G-GCGG
* * * *
1941820 GTGAGCACT-CATCTGGCCAGA-A---AGGATG-GCTAAGCC-TGGATCGATA-GGTGGTAGGTG
62 GCGGGCACTAC-GCCGGCCAGAGAGGCAGGATGCGC-AAGCCGTGGATCGATAGGGTGGTAGGTG
* *
1941877 GGTTTAGGCACATCTTCATATTT-TTCCATGCCAATGCCATCTTTTATGG-TT-AAAATTCATAC
125 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCAT-TTTTATGGCTTGTAAATTCATAC
* * *
1941939 AATAGTCGCCTTAAGGCCTTCATGTGAAGGTTCAATGGCAAGACGACTTCG-TTTCTAGTTTTCA
189 AATGGTC-CCTTAA-GCCTTCATGTGAAGTTTC-ATGGCAAGACGAC-TCGTTTTCTATTTTTCA
* * * * *
1942003 CGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTTTAAATTTTTTTAGAAGGTGTTTAGGCCCC
250 CGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTT-GG-CCC
* * * * *
1942068 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAACTAAAAAATCG
313 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
1942133 AAGTGTACAGGATTTTGTGACCATTTGAAAAACGTGTCCCCATTTCAGACACTTTAATTGCTACT
378 AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
1942198 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
443 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
1942263 GATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCAC
508 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-C
*
1942328 CGGCCCCCCAATCG-CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTTCGGCGATG
571 CGCCCCCCCAATCGCCCGGAACCCCAATGCCGCCGGTCAGG-T-T-C-----T-C--CGGCGATG
* * ** *
1942392 GT-GCC-CCAGGTGAAAAAAATGCGGCACCAGCACATGCTTGAGCCCAGGATGTGCACCCGCAAC
625 GTGGCCACGAGG-AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAAC
** * *
1942455 CCTCGGTCTGGT-TCGATCTCAGACTGGGAAT-AACTCCGTATGCTTAGACTGGAAATGAACTCC
689 CCTCGGTCCAGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * *
1942518 GTATGCCTAACTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCAGCCAGAGGGGCAAGATGCG
753 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG
* ** * * * * *
1942583 CATA-CTGGGGATCGATCGGGTCTTCCTCAGCGTGCTGTCAATCTTGCTACCACAACCCTC-GAT
818 CA-AGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTATCGATCCTGCTGCCGCAACCCTCAG-T
*** *
1942646 CCCATCTG
881 CTGGTCTA
* * * *
1942654 ATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAATGAGCCGACGGTCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGCG
* * * * *
1942719 GGCACTACACTGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGTTAGGGTGGTAGCTAGGTTT
65 GGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
1942784 AGGCACATCTTCATATTTCTG-CAGTGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGG
130 AGGCACATCTTCATATTTCTGCCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * ** *
1942848 TCCCTTAAGCCTTCATGTGAAGTTTCCTAGCAAGATGACAAGTTTTCTATGTTTCACGATTTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** * *
1942913 AAACTTTTTGGGGTTC-AGGATTTTTTTTAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGG
259 AAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGAAGGA-GTTTGG-CCCAAACTTGG
* *
1942977 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAT
321 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
1943042 AGGATGTT-TGACCATTTGAAAAAAGTGTCCACATTTTAGAAACTTTAATGGCTACTGGCAGCAA
386 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
1943106 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGG
451 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
1943171 GCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGTGTACACCCCCCGCCCCCCCA
516 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCA
* * * * *
1943236 ATCG-CTGGAACCCCAATGCCTCCGGTAAGGTTCTCCGGCGACGGTGG-CAGTCGAGAAAAAAAA
581 ATCGCCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGGCCA--CGAGGAAAAAAA
* * * *
1943299 ATGCAGCACCAGCACAGGCTCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCCGATCTT
644 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTT
* * * * *
1943364 AGACTGGGAATGAACTCTGTATGCTTAGACAGCGAATGAACTCCGTATGCCTATGTCAACCCATG
709 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* *
1943429 AAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGT
774 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGT
* * * * * *
1943494 -CCTCTCAGCGTGCTGTCAATCCTGCTGCCGCAACCCTCATTTTGGTATA
839 CCCCCTCAGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTA
* * ** *
1943543 ATCTTAG-CTTGGGAATAAACTCTGTATGCCTAAATCAACCGACGAAATGAGCGGGCGTGCGGGC
1 ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GCGGGC
* * *
1943607 GGGCACTACGTCGGTCAGAGAGGCAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
64 GGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * *
1943672 TAGGCACGTCTTCATATTTCTACCATGCCAATGCCTTTTTTATGGCATGTAAATTCAAACAATGG
129 TAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
1943737 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
194 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
1943802 AAACTTCTTACGTTTCGAGATTTTTTTAAAA-TTTTTCAGAAGGAG-TTGG-CCACACTTGGTAG
259 AAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTGGCCCAAACTTGGTAG
* * *
1943864 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATCCAGCTAAAAACTCGAAGTGTACAGG
324 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
* * * * *
1943929 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACCTTAATAGCTACAGGCAGTAAACT
389 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
1943994 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCGTGGTTTGATGAGGCG-TAGGGGGC
454 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG-GATAGGGGGC
* * *
1944058 CAATATAAGGGCCAAGTACCAGCACCCACCGTACATCATGTGCGCACACCCCCCTCCCCCCCAAT
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAAT
* * * *
1944123 CG-CAGAAAGCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGGCCGACGAGAAAAAAAAATG
583 CGCCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGGCC-ACGAGGAAAAAAAATG
* * * *
1944187 CAGCACCAGCACATGCTCGAGCCCAGCATGTGCACCCGCAACCCTTGATCCAGTCTGATCTTAGA
647 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTAGA
*
1944252 CTGGGAATGAACTCCATATGCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
712 CTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* *
1944316 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAACCGGGGATCGATCGGGTCC
776 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCC
* * * * * * * *
1944381 CCCTCAACATGCTACCGATCCTGCTGCCACAACCTTCAGCCCGATCTA
841 CCCTCAGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTA
* * ** * *
1944429 ATCATAGCCTATGAATAAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGTGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GCGGGCG
* * *
1944494 GGCACTATG-CGGTCAGAGAGGCAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
65 GGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
1944558 AGGCACATCTTCATATTTCTACCATGCCAATGCCTTTTTTATGGCATGTAAATTCAAACAATGGT
130 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * **
1944623 CCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* *
1944688 AACTTCTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
260 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAG-TTTGG-CCCAAACTTGGTA
* * * * *
1944753 GACATGATCTTTGTATTTTTTTTGGCATGGACAAAAACATTCAGCTAAAAACTCGAAGTATACAG
323 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
* * *
1944818 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTATAATAGCTACTGACAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
1944883 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
1944948 CAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACGCCCCCCAA
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGC-CCCCCCAA
* * *
1945013 TCG-CCTGAACCCCACTGCCACCGGTCAGGTTCTCCGGCGATGGTGGCC-CGAGCGAAAAAAAAT
582 TCGCCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGGCCACGAG-GAAAAAAAAT
* * * *
1945076 ACGGCACCAACACATGCCCGAGCCTAGCATGTGCACCCACAA-CC-C--T-C-G---G----T--
646 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTAG
*
1945126 -CT-GG--T----T-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
711 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* *
1945180 ACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAATCGGGTCC
776 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCC
** * * * ** *
1945245 CCCTCAATGTGCTGTCGATCCTGTTGCTGCAACCCTTGGTCTGGTAC-G
841 CCCTCAGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGT-CTA
* * * *
1945293 ATCTTAGACTAGGAATGAACTCAGTATGCCTAAGCCAACCGACGAAACGAGCAGGCAGGCGGACG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCG
* * * * * *
1945358 GGTACTACGCCGACCAAAGAGGCGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGCGGGTTT
65 GGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
** * *
1945423 AGGCACATCTTCATATTTCTGCTGTGCCGATGCCATTTTTATGGCTTGTAAATTCATACAAGGGT
130 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
1945488 CCCTTAAGCCATCATGTGAAGTTTCATGGCAAGACGAATCGTTTTCTATTTTTCATGATTTTTTA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
*
1945553 AACTTTTTACAGTTCGAGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
260 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAG-TTTGG-CCCAAACTTGGTA
* * * * *
1945617 GACATGATCCTTGTATTTTTGTGGGCATGCACAAACAAATTCAGATAAAAACTCAAAGAGTACAG
323 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
* * *
1945682 GATTTTGTGACCATTTGAAAAAAGTATCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
1945747 CTATAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
1945812 CAATATAAGGGCAAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCCGCGCCCCCTAT
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAAT
* * * * * * *
1945877 CG-TCAGAACCCCAATACCGTCGGTCAGGTTCTCCGGCGATGGTGGTCA-G-GGCGAAACAAATG
583 CGCCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGGCCACGAGG-AAAAAAAATG
*
1945939 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGT-CTGATCTGATCTTAG
647 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAG-TCTGATCTTAG
* * ** *
1946003 ATTGGGAATGAACTCTGTATGCTTAGACTGGGAACAAACTCCCTATGCCTAAGTCAACCCACGAA
711 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * *
1946068 ACGAGCGTACGGGCACTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGATCGGGTCC
776 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCC
** * * * * * ** *
1946133 CCCTCAATGGGCTACCGATGCTGCTGCTGCAACCTTTGGTCTGGTCTG
841 CCCTCAGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTA
* * * *
1946181 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGATACGAGAGGACGAGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-GCGGGCG
** *
1946246 GGCACTACGCCGGCCAGAGAGGTGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
65 GGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
1946311 AGGCACATCTTCATATTTCTGCCATGCCAACGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
1946376 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* *
1946441 AACTTTTTACGGTTCGTGATTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTA
260 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAG-TTTGG-CCCAAACTTGGTA
*
1946506 GGACATGATCCTATGTACTTTATGGTTGGCATG-ACACAAAAAATTCAGCTAAAAAC-CGATAGT
323 -GACATGATCCT-TGTA-TTT-TTGTTGGCATGCACA-AAAAAATTCAGCTAAAAACTCGA-AG-
* * *
1946569 TGTACAGAATTTTGTGTACCATTATTGCAAAAAGTGTCCCCCCATTTTCCGACACTTTAATGGCT
381 TGTACAGGATTTTGTG-ACCA-T-TTGAAAAAAGTGT--CCCCA-TTTCAGACACTTTAATGGCT
* * *
1946634 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTGCTTTTA-GGGGTGTGAGTTCTCAAGGTTTGGT
440 ACTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
1946698 GAGAGATAGGGCGCCAATATAAGGGCCAAATACAAGCACCCCATCTGCACATACATGTGCGCACA
504 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCCATC-GCACAT-CATGTGCGCACA
* * * * * *
1946763 CCCCAACCGGCCGCCCCAATCGCCGGGAACCCTAATGTCGCTCTCGGTCAGGTTCTCTGACGATG
566 CCCC--CC-GCCCCCCCAATCGCCCGGAACCCCAATG-C-CGC-CGGTCAGGTTCTCCGGCGATG
* * ** * *
1946828 GT-GCC-CG-GGCGAAAAAAATACGGCCACCAGCACATGCCTAAGCCCAGCATGTCCA-CCGTAA
625 GTGGCCACGAGG-AAAAAAAATGCGG-CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAA
* * *
1946889 -CCTCTGGTCCGGTCTGAATC-TAGA-TGGCAATG-ACTCCGTAAGCTTAGACTGGGAA-GAACT
688 CCCTC-GGTCCAGTCTG-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * *
1946949 -CGTATGCCCTAAGATCAACCCA-GAAACGAGCGTGCCGGCGCTCAGCCAGCCAGA-GGGCAGAA
751 CCGTATG-CCTAAG-TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGA
* ** * * * *
1947011 TGCGCAAGCCGGGGATAGGCCGGGTCCCCCTCAGCGCGCTCTCAATCCTGCTGCCACAACCCTCA
814 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTATCGATCCTGCTGCCGCAACCCTCA
*
1947076 GTCCGGTCTA
879 GTCTGGTCTA
* * * * *
1947086 ATCTTAGACTGGGAATGAACTCCATATGCCTATGCCAACCGATGAAACAAGCGGGCGGGCGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCG
* * *
1947151 GGCACTACACCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
65 GGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
1947216 AGGCACATCTTCATATTTCTTCCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
1947281 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCCATGATTTTTGA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * *
1947346 AACTTTTTAAGGTTTGAGATTTTTTTAAAATTTTTTCAAAAGGACTTTTAGCCCCAAACTTGGTA
260 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGA-GTTT-GGCCCAAACTTGGTA
* * * * *
1947411 GACACGATCCTTGTATTTTTGTTGGAATGTACAAAAAAATTCAGCTAAAAACTTGAAGTGTATAG
323 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
* *
1947476 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACACAC
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
1947541 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * *
1947606 CAATATAAGGGCCAAGTACCAGTAGCCATCGCACATCATGTGCACACACCCCCTGCCCCCTCAAT
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAAT
* * * * *
1947671 CG-TCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCG
583 CGCCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA---T---G-G-T-G-GCCACGAG-G
* * * * * *
1947735 AAAAACAATGCGGCTCTAGCACATGCCCGAGCCCAGCATGTGCACCAGCAACCCTTGGTCCGGTC
637 AAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTC
* * * *
1947800 CGATCTTAGACTGGGAATGAACTCCGTATGGTTGGACTGGGAATGAACTCTGTATGCCTAAGTCA
702 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * * *
1947865 ACCGATGAAACGAGCGTACGGGCGCTTAGCCGGCTAGAGGGGTAGGATGCGTAAGTCGGGGATAG
767 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* * * * * * * * ** *
1947930 GTCGTGTCCCCCTCAGCATGCTACCAATCCTACTACTGCAACCCTTGGTCTGGTCCA
832 ATCGGGTCCCCCTCAGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTA
* * * * *
1947987 ATCTTAGGCTGGGAATGAACTCCGTATGCCTAAACCAACCGACGAAACGAGCGAGTGGACTGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-CGGGCG
* * * *
1948052 GGCACTACGTCAGCCAGAGAGGCGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
65 GGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* ** * * *
1948117 AGGCACATCTTCATATTTTTGCTGTGCCAATGCCACTTTTATAGCTTGTAAATTCATACAATGGC
130 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
1948182 CCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTCTTTTTTTCACAAATTTTGA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* *
1948247 AAC-TTTTACGGTTTGTTAG-TTTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGG
260 AACTTTTTACGGTTCG--AGATTTTTTTAAAATTTTTTCAGAAGGAG-TTTGG-CCCAAACTTGG
* * * * *
1948310 TAGACGTGATCCTTGTACTTTTGTTGGCATGCATAAAAAAGTTTAGCTAAAAACTCGAAGTGTAC
321 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
1948375 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTATTGGCAGCAA
386 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
1948440 ACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
451 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
** * *
1948505 GCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCTTGTGCGCACACCCCCCCCCGGCGCC
516 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCC--C-CC
* * * * *
1948570 CCAATC-ACCGGAACCCTAATGCCGCCGGTCAAGTTCTCCGATGATGCTACGATGATGGTGCCCC
578 CCAATCGCCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC---G--G---CGATGGT-G-GCCAC
* * * **
1948634 GGGTGAAAAAAAATGCAGCTCCAGCACATGCCCGAGCCCAGCATGTGCACCTACAACCCTCGGTC
633 GAG-GAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTC
* *
1948699 CA---T--TC-----C-------G-A-T-C--A----TAGACTGGGAATGAACTCCATTTGCCTA
697 CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * * * *
1948738 AGTCAACCCACGTAACAAGCGCGAGGGCGCTCAGTCGACCAGAGAGGCAAGATGCACAAGCCGGG
762 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG
* * * * ** *
1948803 GATCGACCGAGTCCCCCTCAGCGTGCTATCGATCCTACTGTCGCAACCCTTGGTCTGGTCTG
827 GATCGATCGGGTCCCCCTCAGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTA
*
1948865 ATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGCGGGCG
* * * * * *
1948930 GGCACTACGTCGGCCAGAGAGACAGGATGCGTATGCCATGGATCGATAGGGTGGTAGGTGGCTTT
65 GGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
1948995 AGGCATATCTTCATATTTCTGCCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * **
1949060 CCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTAACGATTTTCAA
195 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
1949125 AACTTTTTACAGTTCGAGATTTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCGAACTTAGTA
260 AACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAG-TTTGG-CCCAAACTTGGTA
* * *
1949190 GACATGCTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCCAAGTGTACAG
323 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAG
* *
1949255 GATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAG
388 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
1949320 CTATAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGA
453 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
1949385 CAATATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCACACCCCCCCGGCCCCCCCA
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GCCCCCCCA
* *
1949450 ATCG-CCGGAACCCCAATGCCGCTGGTTAGGT
581 ATCGCCCGGAACCCCAATGCCGCCGGTCAGGT
1949481 ACTCTGATGA
Statistics
Matches: 6707, Mismatches: 792, Indels: 454
0.84 0.10 0.06
Matches are distributed among these distances:
861 1 0.00
862 46 0.01
863 50 0.01
864 470 0.07
865 186 0.03
866 3 0.00
867 2 0.00
868 8 0.00
869 10 0.00
870 6 0.00
871 7 0.00
872 22 0.00
873 11 0.00
874 3 0.00
875 16 0.00
876 20 0.00
877 73 0.01
878 772 0.12
879 203 0.03
880 50 0.01
881 47 0.01
882 34 0.01
883 31 0.00
884 141 0.02
885 624 0.09
886 122 0.02
887 29 0.00
888 444 0.07
889 415 0.06
890 419 0.06
891 84 0.01
892 20 0.00
893 40 0.01
894 119 0.02
895 27 0.00
896 69 0.01
897 63 0.01
898 55 0.01
899 45 0.01
900 341 0.05
901 771 0.11
902 77 0.01
903 42 0.01
904 129 0.02
905 367 0.05
906 50 0.01
907 39 0.01
908 12 0.00
909 35 0.01
910 54 0.01
912 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGCGGGCGG
GCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTGGCCCAAACTTGGTAGAC
ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATCGC
CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGGTGGCCACGAGGAAAAAAAATGCGGC
ACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC
AGCGTGCTATCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTA
Found at i:1944275 original size:26 final size:26
Alignment explanation
Indices: 1944246--1944298 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
1944236 CCAGTCTGAT
1944246 CTTAGACT-GGGAATGAACTCCATATG
1 CTTAGA-TAGGGAATGAACTCCATATG
*
1944272 CTTAGATAGGGAATGAACTCCGTATG
1 CTTAGATAGGGAATGAACTCCATATG
1944298 C
1 C
1944299 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGATAGGGAATGAACTCCATATG
Found at i:1948149 original size:901 final size:896
Alignment explanation
Indices: 1945136--1949611 Score: 5492
Period size: 901 Copynumber: 5.0 Consensus size: 896
1945126 CTGGTTCGAT
* * *
1945136 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAA-GAACT-CGTATGCCTAAGTCAACCCA-GAAACGAGCGTACGGGCGCTCAGC
** **
1945201 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCA-ATCGGGTCCCCCTCAATGTGCTGTCGATC
63 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT-AGATCGGGTCCCCCTCAGCGTGCTACCGATC
* * *
1945265 CTGTTGCTGCAACCCTTGGTCTGGTAC-GATCTTAGACTAGGAATGAACTCAGTATGCCTAAGCC
127 CTGCTGCTGCAACCCTTGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
1945329 AACCGACGAAACGAGC-AGGCAGGCGGACGGGTACTACG-CCGACCAAAGAGGCGGGATGCGCAA
191 AACCGACGAAACGAGCGA-GCGGGCGGGCGGGCACTACGTCCG-CCAGAGAGGCGGGATGCGCAA
* * * *
1945392 GCTGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTGCTGTGCCGATGCC
254 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCC
* *
1945457 ATTTTTATGGCTTGTAAATTCATACAAGGGTCCCTTAAGCCATCATGTGAAGTTTCATGGCAAGA
319 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
* * *
1945522 CGAATCGTTTTCTATTTTTCATGATTTTTTAAACTTTTTACA-GTTCGAGA-TTTTTTAAAATTT
384 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-AGGTTCGAGATTTTTTTAAAATTT
* *
1945585 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTGGGCATGCACA
448 TTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
* * * * *
1945650 AACAAATTCAGATAAAAACTCAAAGAGTACAGGATTTTGTGACCATTTGAAAAAAGTATCCCCAT
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
1945715 TTTAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGTGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
1945780 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTACCAGCACCAATCGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * *
1945845 CATCATGTGCGCACACCCCCCGCGCCCCCTATCGTCAGAACCCCAATACCGTCGGTCAGGTTCTC
708 CATCATGTGCGCACACCCCCCGC-CCCCCAATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTC
* * *
1945910 CGGCGA---T---G-G-TGGT---CAGGGCGAAACAAATGCGGCACCAGCACATGCCCGAGCCCA
772 CGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
1945964 GCATGTGCACCCGCAACCCTCGGTCTGATCTGATCTTAGATTGGGAATGAACTCTGTATG
837 GCATGTGCACCAGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
1946024 CTTAGACTGGGAACAAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGC
1 CTTAGACTGGGAA-GAACT-CGTATGCCTAAGTCAACCCA-GAAACGAGCGTACGGGCGCTCAGC
* * * ** * *
1946089 TGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCAATGGGCTACCGATGC
63 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATAGATCGGGTCCCCCTCAGCGTGCTACCGATCC
* *
1946154 TGCTGCTGCAACCTTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
128 TGCTGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
1946219 CCGACGATACGAGAG-GACGAGCGGGCGGGCACTACG-CCGGCCAGAGAGGTGGGATGCACAAGC
193 CCGACGAAACGAGCGAG-CGGGCGGGCGGGCACTACGTCC-GCCAGAGAGGCGGGATGCGCAAGC
* *
1946282 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAACGCCAT
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCAT
1946347 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACG
* * *
1946412 ACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGTGATTTTTTTAAAATTTTTT
386 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGAGATTTTTTTAAAATTTTTT
*
1946477 CAAAAGGAGTTTTGGCCCCAAACTTGGTAGGACATGATCCTATGTACTTTATGGTTGGCATG-AC
451 CAAAAGGAGTTTTGGCCCCAAACTTGGTA-GACATGATCCT-TGTA-TTT-TTGTTGGCATGCAC
* *
1946541 ACAAAAAATTCAGCTAAAAAC-CGATAGTTGTACAGAATTTTGTGTACCATTATTGCAAAAAGTG
512 A-AAAAAATTCAGCTAAAAACTCGA-AG-TGTACAGGATTTTGTG-ACCA-T-TTGAAAAAAGTG
*
1946605 TCCCCCCATTTTCCGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGCTT
571 T--CCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTT
* * * * * * *
1946670 TTA-GGGGTGTGAGTTCTCAAGGTTTGGTGAGAGATAGGGCGCCAATATAAGGGCCAAATACAAG
632 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
*
1946734 CACCCCATCTGCACATACATGTGCGCACACCCCAACCGGCCGCCCCAATCGCCGGGAACCCTAAT
697 CA-CCCATC-GCACAT-CATGTGCGCACACCCC--CC-GCC-CCCCAATCGCC-GGAACCCCAAT
* * * * * * *
1946799 GTCG-C--TCTCGG---T-C-A-GGTTCTCTGACGATGGTG-CCCGGGCGAAAAAAATACGGCCA
754 GCCGCCGGT-TAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAATGCGG-CA
** * * *
1946854 CCAGCACATGCCTAAGCCCAGCATGTCCACC-GTAA-CCTCTGGTCCGGTCTGAATC-TAGA-TG
817 CCAGCACATGCCCGAGCCCAGCATGTGCACCAGCAACCCTC-GGTCCGGTCCG-ATCTTAGACTG
* *
1946915 GCAATG-ACTCCGTAAG
880 GGAATGAACTCCGTATG
* *
1946931 CTTAGACTGGGAAGAACTCGTATGCCCTAAGATCAACCCAGAAACGAGCGTGCCGGCGCTCAGCC
1 CTTAGACTGGGAAGAACTCGTATG-CCTAAG-TCAACCCAGAAACGAGCGTACGGGCGCTCAGCC
* * ** * *
1946996 AGCCAGA-GGGCAGAATGCGCAAGCCGGGGATAGGCCGGGTCCCCCTCAGCGCGCT-CTCAATCC
64 GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATAGATCGGGTCCCCCTCAGCGTGCTAC-CGATCC
** ** * * * *
1947059 TGCTGCCACAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACTCCATATGCCTATGCCAA
128 TGCTGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
1947124 CCGATGAAACAAGCGGGCGGGCGGGCAGGCACTAC-ACCGACCAGAGAGGCGGGATGCGCAAGCC
193 CCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGTCCG-CCAGAGAGGCGGGATGCGCAAGCC
* * *
1947188 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATTCCAATGCCATT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCATT
1947253 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * *
1947318 CTCGTTTTCTATTTTCCATGATTTTTGAAACTTTTTAAGGTTTGAGATTTTTTTAAAATTTTTTC
387 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGAGATTTTTTTAAAATTTTTTC
* * * * *
1947383 AAAAGGACTTTTAGCCCCAAACTTGGTAGACACGATCCTTGTATTTTTGTTGGAATGTACAAAAA
452 AAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
1947448 AATTCAGCTAAAAACTTGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
1947513 GACACTTTAATGGCTACTGGCAACACACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
1947578 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTAGCCATCGCACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
1947643 ATGTGCACACACCCCCTGCCCCCTCAATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGAC
712 ATGTGCGCACACCCCCCGCCCCC-CAATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGAC
* *
1947708 GATGCTCCGGCGATGGTGCCCCGGGCGAAAAACAATGCGGCTCTAGCACATGCCCGAGCCCAGCA
776 GATGCTCCGGCGATGGTGCCCCGGGCGAAAAA-AATGCGGCACCAGCACATGCCCGAGCCCAGCA
*
1947773 TGTGCACCAGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
840 TGTGCACCAGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
1947830 GTTGGACTGGGAATGAACTCTGTATGCCTAAGTCAACCGATGAAACGAGCGTACGGGCGCTTAGC
1 CTTAGACTGGGAA-GAACTC-GTATGCCTAAGTCAACCCA-GAAACGAGCGTACGGGCGCTCAGC
* * * * * * * *
1947895 CGGCTAGAGGGGTAGGATGCGTAAGTCGGGGATAGGTCGTGTCCCCCTCAGCATGCTACCAATCC
63 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATAGATCGGGTCCCCCTCAGCGTGCTACCGATCC
* * ** * *
1947960 TACTACTGCAACCCTTGGTCTGGTCCAATCTTAGGCTGGGAATGAACTCCGTATGCCTAAACCAA
128 TGCTGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
1948025 CCGACGAAACGAGCGAGTGGACTGGCGGGCACTACGTCAGCCAGAGAGGCGGGAAGCGCAAGCCG
193 CCGACGAAACGAGCGAGCGGGCGGGCGGGCACTACGTCCGCCAGAGAGGCGGGATGCGCAAGCCG
* * *
1948090 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCACTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCATTT
* * *
1948155 TTATAGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * * *
1948220 TCGTTTTCTTTTTTTCACAAATTTTGAAAC-TTTTACGGTTTGTTAG-TTTTTTTAAAATTTTTT
388 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCG--AGATTTTTTTAAAATTTTTT
* * *
1948283 CAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCATGCATAAAA
451 CAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
1948348 AAGTTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
516 AAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
1948413 AGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
**
1948478 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
1948543 CTTGTGCGCACACCCCCCCCCGGCGCCCCAATCACCGGAACCCTAATGCCGCCGGTCAAGTTCTC
711 CATGTGCGCACA---CCCCCC-GCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTC
* * ** * * *
1948608 CGATGATGCTACGATGATGGTGCCCCGGGTGAAAAAAAATGCAGCTCCAGCACATGCCCGAGCCC
772 CGACGATGCTCCGGCGATGGTGCCCCGGGCG-AAAAAAATGCGGCACCAGCACATGCCCGAGCCC
** *
1948673 AGCATGTGCACCTA-CAACCCTCGGTCCATTCCGATCATAGACTGGGAATGAACTCC--AT-
836 AGCATGTGCACC-AGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
1948731 -TT-GCCT---AAG---TC--A-ACCCACGT-AA--C---AA-GCGCG-A-GGGCGCTCAGTCGA
1 CTTAGACTGGGAAGAACTCGTATGCCTAAGTCAACCCAGAAACGAGCGTACGGGCGCTCAGCCGG
* * * * * * * *
1948776 CCAGAGAGGCAAGATGCACAAGCCGGGGATCGACCGAGTCCCCCTCAGCGTGCTATCGATCCTAC
66 CCAGAGGGGCAGGATGCGCAAGCCGGGGATAGATCGGGTCCCCCTCAGCGTGCTACCGATCCTGC
*
1948841 TG-TCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACC
131 TGCT-GCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * *
1948905 GACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGTATGCCATG
195 GACGAAACGAGCGAGCGGGCGGGCGGGCACTACGTCCGCCAGAGAGGCGGGATGCGCAAGCCGTG
* * * *
1948970 GATCGATAGGGTGGTAGGTGGCTTTAGGCATATCTTCATATTTCTGCCATGCCAATTCCATTTTT
260 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCATTTTT
*
1949035 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGACGACTC
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* **
1949100 GTTTTCTATTTTTAACGATTTTCAAAACTTTTTACA-GTTCGAGATTTTTTTAAAATTTTTTCAG
390 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-AGGTTCGAGATTTTTTTAAAATTTTTTCA-
* * *
1949164 AAA-GAGTTTTGGCCCCGAACTTAGTAGACATGCTCCTTGTATTTTTGTTGGCATGCACAAAAAA
453 AAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
1949228 ATTTAGCTAAAAACTCCAAGTGTACAGGATTTTGTGAGCATTTGAAAAAAGTGTCCCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
1949293 ACACTTTAATGGCTACTGGCAGCAAAGCTATAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
1949358 CTCGAGGTTTGATGAGGGATAAGGGGACAATATAAGGGCCAAGTACCAGCACCCATCACATATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
1949423 TGTGCGCACACCCCCCCGGCCCCCCCAATCGCCGGAACCCCAATGCCGCTGGTTAGGTACTCTGA
713 TGTGCGCACA-CCCCCC-G-CCCCCCAATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGA
* * ** * * *
1949488 TGATGCTTCGGCGATGGCACCCCGGGCGAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAAC
775 CGATGCTCCGGCGATGGTGCCCCGGGCG-AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
1949553 ATATACACCCGTAACCCTCGGTTCGGTCCGATCTTAGCACTGGGTAATTG-ACTCCGTAT
839 ATGTGCACCAGCAACCCTCGGTCCGGTCCGATCTTAG-ACTGGG-AA-TGAACTCCGTAT
1949612 AGCCTAAGCC
Statistics
Matches: 3117, Mismatches: 376, Indels: 197
0.84 0.10 0.05
Matches are distributed among these distances:
876 9 0.00
877 122 0.04
878 584 0.19
879 20 0.01
880 6 0.00
881 4 0.00
887 20 0.01
888 402 0.13
889 50 0.02
890 12 0.00
891 19 0.01
892 17 0.01
893 39 0.01
894 119 0.04
895 24 0.01
896 47 0.02
897 46 0.01
898 11 0.00
899 40 0.01
900 169 0.05
901 608 0.20
902 23 0.01
903 20 0.01
904 152 0.05
905 383 0.12
906 51 0.02
907 44 0.01
908 11 0.00
909 32 0.01
910 33 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (896 bp):
CTTAGACTGGGAAGAACTCGTATGCCTAAGTCAACCCAGAAACGAGCGTACGGGCGCTCAGCCGG
CCAGAGGGGCAGGATGCGCAAGCCGGGGATAGATCGGGTCCCCCTCAGCGTGCTACCGATCCTGC
TGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGAGCGGGCGGGCGGGCACTACGTCCGCCAGAGAGGCGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTTGAAACTTTTTAAGGTTCGAGATTTTTTTAAAATTTTTTCAAAA
GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGCCCCCCAATCGCCGGAACCCCAATGCCGCCGGTTAGGTTCTCCGACGATGC
TCCGGCGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
CCAGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:1951592 original size:867 final size:866
Alignment explanation
Indices: 1949565--1956297 Score: 7326
Period size: 882 Copynumber: 7.7 Consensus size: 866
1949555 ATACACCCGT
* * * *
1949565 AACCCTCGGT-TCGGTCCGATCTTAGCACTGGGTAATTG-ACTCCGTATAGCCTAAGCCATCCCG
1 AACCCTCGGTCT-GGTCTGATCTTAG-ACTAGG-AA-TGAACTCCGTAT-GCCTAAGCCA-ACTG
** *
1949628 ATCGAAATTA--GCGGGCAGTGCGGGCGGGCACTACGCCGGCCCAGAGAGGTGGGATGGCGCAAG
60 A-CGAAACGAGGGCGGGC-GTGCGGGCGGGCACTACGCCGG-CCAGAGAGGCGGGAT-GCGCAAG
* * *
1949691 CCGTGGATCGATAGGGTGGTGGGTGGGTTTAGTCACATCTTCATATTTCCTGCCATGCCAATTCC
121 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-CTGCCATGCCAATGCC
1949756 A-TTTTATGGCTTGATAAAATTCATACAATGGTCCCTTAAGCCTTCATGGTGAAGTTTCATGGCA
185 ATTTTTATGGCTTG-T-AAATTCATACAATGGTCCCTTAAGCCTTCAT-GTGAAGTTTCATGGCA
* ** * *
1949820 AGACCGACTCGTTTTTTATTTTTCATGATTTGCGAAAAC-TTTTACGG-TTAAGGATTTTTTTAA
247 AGA-CGACTCGTTTTCTATTTTTCATGATTTTTG-AAACTTTTTACGGTTTGA-GATTTTTTAAA
* * * * *
1949883 A-TTTTTCAAAAGGAGTTTTGGCCCTAAAACTTGGTAGACATGATCCTTGTATTTTT-TGGGGAT
309 ATTTTTTCAGAAGGAGTTTTGGCCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * * *
1949946 GCA-TAAAAAATTCAGCTAAAAAATCCGAAAGTGTAATAAGATTTTGTTGACCATTTGAAAAAAG
373 GCACAAAAAAATTCAGCTAAAAACT-CG-AAGTGT-ACAGGATTTTG-TGACCATTTGAAAAAAG
* *
1950010 TGTCCCCATTTAAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
434 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
1950075 AGGGGGTGTGAGTTCTC-ATGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
499 AGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * **
1950139 ACCCATCACAAATCATGCGCGCACACCCTCTCCGGCCCCCCCAATCGCCAGAACCCCAATGCCGT
563 ACCCATCGCACATCATGTGCGCACA-CC-C-CCAG-CCCCCCAATCGCCGGAACCCCAATGCCAC
* * * * * * *
1950204 CGGTCAGGTTCTCCAGTGATGGTGCCCCAAGCGAAAAAGAATGCGGCACCAGCAAATCCCCAAGC
624 CGGTCAGGTTCTCCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
1950269 CCAACATGTGCACCCATAACCCTCGGTTC-GTCCGTATGCTTAGACTAGGAATGAACTCCGTATG
689 CCAGCATGTGCACCCATAACCCTCGGTCCGGTCCGAATGCTTAGACTATGAATGAACTCCGTATG
* * * * *
1950333 CCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTTAGCCGGCCAAAGGGGCAGGATGCGCAAGC
754 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * *
1950398 CGGGGATCGACCGGGTCCCCCTTAGCGTGCTACCGATCCTGTTGCCAC
819 CGGGGATCGACCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCAC
* * * *
1950446 AACCCTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCTGTATGCCCAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
* * * * * * *
1950511 C-A-AGCGGGCGGGCGGGCGGGCATTTCGTCGGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCA
66 CGAGGGCGGGCGTGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
*
1950574 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCCATGCCAATGCCATTTTTATGGC
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
1950639 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
196 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
*
1950704 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTCAAAATTTTTTTAGAAGGAG
261 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTT-AAAATTTTTTCAGAAGGAG
** * *
1950769 TTTTGGCCCCAAACTTGGTAGACACGATACC-TGTAGTTTTGTTGGCATGCACAAAAAAATTCAA
325 TTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
1950833 CTAAACACTCGCAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
389 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
1950898 TAATGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
454 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
1950963 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCG
519 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** * *
1951028 TGCACCCCCAGCCCCCCAATCGCCGGAACCCCAATGCCACCGGTCAGATTCTCCGGCGATGGTGG
584 CACACCCCCAGCCCCCCAATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGGTGC
* * * *
1951093 CTCAGGCGAAAAAAAATGCGAG-ACCAGCACATACCCGAGCCCAGCATGTGTACCCATAACCCCC
649 CCCAGGCGAAAAAAAATGCG-GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTC
* * * *
1951157 GGTCCGGTCCG-AT-ATTAGACTATGAATGAACTCCGTATGCCTACGTCAACCCATGAAATGAGC
713 GGTCCGGTCCGAATGCTTAGACTATGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * ** * * * *
1951220 GTGCGGGTGCTCAGCCAGCCAGAGGGGCAATATGCGCAAGTCGAGGATCGATCGGGTCCCCCTCT
778 GTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCA
* * *
1951285 GCATGCT-CTTGATCCTACTGCCAC
843 GCGTGCTGC-CGATCCTGCTGCCAC
* * * *
1951309 AACCCTCAGTCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTGGCGAAA
1 AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
* * *
1951374 TGAGTGGGTGGGCGTGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
66 CGA--GGGCGGGCGTGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * *
1951439 CGATAGGTTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTGCCAGGCCAATGCCATTTTTATG
129 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* *
1951504 GCTTGTTAAAATTCATACAATGGT-CCTTAA-CCTTCATGTGAAATTTCATGGCAACACGACTCG
194 GCTTG-T-AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* *
1951567 TTTTCTATTTTTCATGATTTTTGAAACATTTTACGG-TTCAGGATTTTTTAAAAATCTTTTT-AG
257 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGA-GATTTTTT-AAAAT-TTTTTCAG
* * * * * *
1951630 AAAGAGATTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTCGCTTGCACAAAAAAC
319 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
1951695 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGA
384 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
1951760 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTC
449 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
**
1951825 TCGAGGTTTGATGAGTTATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
514 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * ** *
1951890 GTGCGCACCCCCCCGGCCCCCCCAAT-GTCAGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGA
579 GTGCGCACACCCCCAG-CCCCCCAATCGCCGGAACCCCAATGCCACCGGTCAGGTTCT-C--CG-
* * * ** *
1951954 TGCTCCGGTGATGGTGGCCC-GAGAGAAAAAAAA-GGGGCACCAGCACATGCTTGAGCCCAGTAT
639 -G---C---GATGGTGCCCCAG-GCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* ** * *
1952017 GTACACCCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTGTGCTTAGACTG
696 GTGCACCCATAACCCTCGGTC----C-GGTC-----C-------GAA-------TGCTTAGACTA
*
1952082 TGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAG
737 TGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* *** * * *
1952147 GGGCAGGATACGCAAGCCGGGGATCGGTAGGGTCCCCCTCAGTGTGCTGCCAATCCTGCTGCCGC
802 GGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCAC
* * * * * * * *
1952212 AACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATTCCTAAGCCGACCGACGAAA
1 AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
* * * * * *
1952277 CGA--GCGGGCAG-GAGGGCGGGCACTACGTCGGCCAAAGAAGCAGGATAG-GCAAGCCATGGAT
66 CGAGGGCGGGC-GTGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGAT-GCGCAAGCCGTGGAT
* *
1952338 CAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTGCCATGCCAATGCCATTTTTATG
129 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
*
1952403 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTT
194 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* **
1952468 TTCTATTTTTCATGATTTTTGAAGCTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGAAGG
259 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGA-TTTTTTAAAATTTTTTCAGAAGG
* * ** *
1952533 AGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGAAATGCACAAAAAACTTCA
323 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
1952598 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTTAGACACT
388 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
1952663 TTAATTGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGA
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * *
1952728 GGTTTGATGAGGGATAAGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGC
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * * * * *
1952793 GCACAACCCCCA-TCCCCCAATTGCCGGAAGCCCAACGCCGCTGGTAAGGTTCTCCTGCGATGGT
583 GCAC-ACCCCCAGCCCCCCAATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGGT
* * * * *
1952857 GCCCCAGGCGAAAAAAATTGTGACACCAGCACATGCCAGAGCCTAGCATGTGCACCCATAACCCT
647 GCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCC-
*
1952922 TGATCCGGTCCGATCTTAGACTCGGAATGAACTCCGTATG-CTTAAACTGGGAATGAACTCCGTA
711 ---T-CGGTCCG------G--TCCGAATG--CT---TA-GAC-T--A-T--GAATGAACTCCGTA
*** * * * * * *
1952986 TGCCTAAGTCAGGTCATGAAACGAGCGTGCGAGCGCTTAGTCAGCCAGAGGGGCAGGATGTGCAA
752 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAA
* * * * * * *
1953051 GCCGGGGATCGACCGGGTCCCCTTCAGTGTGCTGCTGATCTTGCTACAAT
817 GCCGGGGATCGACCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCAC
* * * *
1953101 AACCCTTGGTTTGGT-TCAGTCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA-TCAACGA
1 AACCCTCGGTCTGGTCTGA-TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACT-GACGA
* * * *
1953164 AACGA--GCGGGCGGGTGGGCGGGCACTATGCCGGCCAGAGAGCCGGGATGCGCAAGCCGTGGAT
64 AACGAGGGCGGGCGTGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * *
1953227 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCGTGCCAATGCCTTTTTTAT-
129 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* * *
1953291 G---G---ATTCATAAAATGGTCCCTTAAGCCTTCATGTGATGTTTCATGGCAAGACAACTCGTT
194 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
1953350 TTCTATTTTTCAAGATTTTTTAAACTTTTTACGGTTCGAGATTTTTTAAAAATTGTTTCTGAAGG
259 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTT-AAAATTTTTTCAGAAGG
* * *
1953415 AGTTTTAGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAACATTCA
323 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
1953480 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
388 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
1953545 TTAACGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGA
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
1953610 GGTTTGATGGGGGATAGCGGGCCAATATAAGGGCCAAGTACTAGCACGCATCGCACATCATGTGC
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
1953675 TCACAGCCCCC-TCCCGCGGCCTTAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GAG
583 GCACA-CCCCCAGCCC-C--CC--AATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCG
* * * * * *
1953738 ATGGTGCCCCGGGTGAAAAAAAATACGGCACCAGCACATGCTCGA-CCTAGCATGTGCACCCACA
642 ATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATA
* * ** **
1953802 ACCATCAGTCCAATCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
707 ACCCTCGGTCCGGTCCGAATGCTTAGACTATGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
*
1953865 ACGAGCGTACGGGCGCTCAGCCGGCC-----GG--GGAT---C-A------G-TC-A---GGTCC
772 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCC
* * *
1953908 CCTTCAGCGTGCTGTCGAT-CTACTGCCAC
837 CCCTCAGCGTGCTGCCGATCCTGCTGCCAC
** * * * * * **
1953937 AACCCTCGGTCCAGTTTCATCTTAGACTGGGAATGAACTCTGTATGCCTTAGCCAACCAACGAAA
1 AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
* * * * * * * *
1954002 CGA--GCAGACAG-ACGGGCGGGTACTACACCGGCCAGAGAGGCGAGATGTGCAAGCCATGGATC
66 CGAGGGCGGGC-GTGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* *
1954064 GATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGA
130 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGG
* * * * *
1954129 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAATTTCATGGCAAAAAGAGTCGTAT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
*
1954194 TCTATTTTT--T-A------AAA--TTTT----TTT-CG----------A-------A-AA--AG
260 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAG
* *
1954223 TTTTAGCCCCAAACTTGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
325 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* ** *** * *
1954288 TAAAAACTTGAAGTGTACAGGATTTTGTGACTGTTTGAAAAAAACATCCCTATTTTAGACACTTT
390 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
1954353 AATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCACGAGG
455 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
1954418 TTTGATGAGGGATAGGGGCCCAATATAAAGGCCAACTACC-GACACCCATCGCACATCATGTGCG
520 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTGCG
* * * * * * **
1954482 CACACCCCCTGCCCCCCAATCACCGGAACCCCAATGCCATCGATAAGGTTTTCCTACGATGGTGC
584 CACACCCCCAGCCCCCCAATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGGTGC
* * *
1954547 CCCAGGCGAAAAAAATTACGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCCATAACCCTTG
649 CCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCC---
*
1954612 ATTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG-CTTAAACTGGGAATGAACTCCGTATG
711 --TCGGTCCGGTC-----C---GAATG--CT---TA-GAC-T--A-T--GAATGAACTCCGTATG
** * * *
1954676 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGGGGCAGGATGTGTAAGC
754 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * * * * **
1954741 CGGGGATCGGCCGGGTCCCCCTCAGTGTGTTGCTGATCTTGCTGCTGC
819 CGGGGATCGACCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCAC
* *
1954789 AACCCTCAGT-TCGGT-TCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA-TCGACG
1 AACCCTCGGTCT-GGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACT-GACG
* * * * *
1954851 AAACGA--GCGGGCGGGTGGGCGGGCACTACGCCGGCTAGAGAGGCGGGATGCGTAAGCCATGGA
63 AAACGAGGGCGGGCGTGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGA
* *
1954914 TCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCGTATTTCTGCCATGCCAATGCCATTTTTAT
128 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* *
1954979 -G---G---ATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAT
193 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* **
1955037 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTTTAATTTTTTCAGAAG
258 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGA-TTTTTTAAAATTTTTTCAGAAG
* * * *
1955102 GATTTTTGGCCCCAAACTTGGTAGACATGATCCTCGTATTTTTGTTGGCATGCACAAAAACATTC
322 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
1955167 AGCGAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACAC
387 AGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
1955232 TTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCG
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
1955297 AGGTTTGTTGAGGGATAAGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
1955362 CGCAAACCCCCCTGGCCCCCCCAATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACAAT
582 CGCACA-CCCCC-AG-CCCCCCAATCGCCGGAACCCCAATGCCACCGGTCAGG---T-------T
* * * * * *
1955427 GCTCCGGCGATAGTGTCCCAAGCG-AAAAAAATGTGGCTCCAGCATATGCCCGAGCCCAGCATGT
634 -CTCCGGCGATGGTGCCCCAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
**** * * **
1955491 GCACTGGCAACCCTTGGTCTGGTCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
698 GCACCCATAACCCTCGGTCCGGTCCGAATGCTTAGACTATGAATGAACTCCGTATGCCTAAGTCA
* ** *
1955554 ACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCAGGAAACGCAAGACGGGGATCG
763 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* * * * *
1955619 ACTGGATCCCCCTCAGCGTGCTGCCAATCTTGCTGCCGC
828 ACCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCAC
* * * * * *
1955658 AACCCTTGATCCGGTCTGATCTTAGACTATGAATGAGCTCCGTATGCCTAAGCCAA-TCGACAAA
1 AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACT-GACGAA
* * *
1955722 ATGAACGGGCGGGCGTGCGGGCGGGCACT-CTACCGGCCA-ATGAGACGGGATGCGCAAGCCGTG
65 ACG-A-GGGCGGGCGTGCGGGCGGGCACTAC-GCCGGCCAGA-GAGGCGGGATGCGCAAGCCGTG
* * *
1955785 GATTGATAGGGTGGTAGGTGGGTATAGGCACATCTTCATATTTCTGCCATGCCAATACCATTTTT
126 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTT
* *
1955850 ATGGCTTGTAAATTCTTACAATGGTCCCTTGAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
191 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
* * * *
1955915 GTTTTCTATTTTTCACGATTTTTAAAACATTTTACGGTTTGGGATTTTTCTAAAATTTTTTCAGA
256 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTT-TAAAATTTTTTCAGA
* * *
1955980 AGGAGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTAGTGGGCATG--CAAAAAAAT
320 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
1956043 TCAGCTAAAAACTCGAAATGTATAGGATTTTGTGACCATTTGAAAAAAGTG-CCCTCATTTCAGA
385 TCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCC-CATTTCAGA
* *
1956107 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCT-TATAAGGGGGTGTGAGTTC
449 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
1956171 TCGGGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
514 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * ** *
1956236 GTGCGCACACCCCCACGGCCCCCCAATTGTCGGAACTCCTATGCTGCCGATCAGGTTCTCCG
579 GTGCGCACACCCCCA--GCCCCCCAATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCG
1956298 ATGATGCTCC
Statistics
Matches: 4979, Mismatches: 619, Indels: 524
0.81 0.10 0.09
Matches are distributed among these distances:
801 32 0.01
802 42 0.01
803 23 0.00
805 7 0.00
806 242 0.05
808 11 0.00
813 1 0.00
816 2 0.00
817 2 0.00
820 2 0.00
823 3 0.00
824 2 0.00
827 1 0.00
828 2 0.00
829 57 0.01
832 4 0.00
834 5 0.00
836 169 0.03
837 25 0.01
840 4 0.00
841 2 0.00
842 1 0.00
843 59 0.01
845 60 0.01
846 1 0.00
847 2 0.00
848 3 0.00
849 1 0.00
851 21 0.00
852 173 0.03
854 5 0.00
856 4 0.00
859 51 0.01
860 3 0.00
861 1 0.00
862 1 0.00
863 173 0.03
864 109 0.02
865 17 0.00
866 7 0.00
867 476 0.10
868 187 0.04
869 236 0.05
870 59 0.01
871 66 0.01
872 40 0.01
873 171 0.03
874 18 0.00
875 23 0.00
876 48 0.01
877 134 0.03
878 142 0.03
879 16 0.00
880 166 0.03
881 32 0.01
882 593 0.12
883 10 0.00
884 3 0.00
885 60 0.01
886 39 0.01
887 33 0.01
888 24 0.00
889 305 0.06
890 9 0.00
891 1 0.00
893 1 0.00
894 7 0.00
895 45 0.01
896 18 0.00
897 18 0.00
898 21 0.00
899 457 0.09
900 15 0.00
902 1 0.00
903 174 0.03
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (866 bp):
AACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
CGAGGGCGGGCGTGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCAGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCAGCCCCCCAATCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGGTGCCC
CAGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCATAACCCTCGGT
CCGGTCCGAATGCTTAGACTATGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCAGCG
TGCTGCCGATCCTGCTGCCAC
Found at i:1952965 original size:26 final size:26
Alignment explanation
Indices: 1952936--1952988 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1952926 CCGGTCCGAT
*
1952936 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAAACTCGGAATGAACTCCGTATG
*
1952962 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTCGGAATGAACTCCGTATG
1952988 C
1 C
1952989 CTAAGTCAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTCGGAATGAACTCCGTATG
Found at i:1954653 original size:26 final size:26
Alignment explanation
Indices: 1954624--1954676 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1954614 TCGGTCCGAT
*
1954624 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
1954650 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
1954676 C
1 C
1954677 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:1957156 original size:26 final size:26
Alignment explanation
Indices: 1957127--1957179 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1957117 CCGGTCCGAT
1957127 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
1957153 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
1957179 C
1 C
1957180 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:1960833 original size:26 final size:26
Alignment explanation
Indices: 1960793--1960845 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1960783 CCGATCCGAT
* *
1960793 CTTAGACTGGTAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1960819 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1960845 C
1 C
1960846 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1965202 original size:26 final size:26
Alignment explanation
Indices: 1965173--1965224 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
1965163 CCAGTTTGAT
1965173 CTTAGACTAGGAAAGAACTCCATATG
1 CTTAGACTAGGAAAGAACTCCATATG
* * *
1965199 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTAGGAAAGAACTCCATATG
1965225 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCATATG
Found at i:1966966 original size:26 final size:26
Alignment explanation
Indices: 1966937--1966987 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1966927 CGGTCCGATC
*
1966937 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
1966963 TTAGACTAGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
1966988 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Found at i:1967192 original size:892 final size:890
Alignment explanation
Indices: 1960175--1972555 Score: 13786
Period size: 875 Copynumber: 14.0 Consensus size: 890
1960165 CTATGGACCA
* *
1960175 AGAGAGGCGGGATGCGTAAGCCGTCTGGATCGATATGGGT-GTAGGTGGGTTTAGG-AGCATTTT
1 AGAGAGGCGGGATGCGCAAGCCG--TGGATCGATA-GGGTGGTAGGTGGGTTTAGGCA-CATCTT
* *
1960238 CATATTTCTGCTACAT-ACAATGCCATTTTTATGGCTTGT-AATTCATACAATGGTTCCTTAAGC
62 CATATTTCTGC--CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
1960301 CTTCATGTGAAGTTTCATGGCAA-A-GACCTCGTTTTCTATTTTGCCCGATTTTTGAAAC----T
125 CTTCATGTGAAGTTTCATGGCAAGACGA-CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
** * * *
1960360 -C--TTTGGGATTTTTTTTTAATTTTTTTAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
189 ACGGTTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
** *
1960422 CCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCT--AAACTCGAAGTGTACAGGA-TTTGT
254 CCTTGTATTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
*
1960484 GACCATTTGAAAAAAGTGTCCCCATTTCAGAC-CTTTAACCGGGCTACTGGCA-CAAACCTGTAA
319 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA--TGGCTACTGGCAGCAAACCTGTAA
*
1960547 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGGCCAATAT
382 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *** *
1960612 AAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGCCGG
447 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCTACCCCCCCAATCGTCGG
* * * ** * *
1960677 AACCCTAATGCTGCCGGTCAGGTTCTCCGATGATGGTGCCTCGAGCAAAAAAAAATGCGGCACCA
512 AACCCCAATGCCGCCGGTCAGGTTTTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGGCACCA
* * * *
1960742 ACACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCCGATCCGATCTTAGACTGGTAAT
577 GCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * * * *
1960807 GAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCATGAGACGAGCGTA
642 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * *
1960872 CGGGCGCTCAACCGACCAGAGGGGCAAGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTCAACG
707 CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCG
** * *** * *
1960937 TGCTACCGATCCTGCTACCGCAACCCTCGGTCCAGTCCGGTCTTAGACTGGGTATGAACTCCTTA
772 TGCTGTCGATCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTA
* * * *
1961002 TGCCTAAGTCGACCGACGAAACGAGCGGGC--GCTGGCGGGCACTACGTCGGCC
837 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* * *
1961054 AGAGAGGCAGGATGCG-AAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* **
1961118 TTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACAGTCCCTTAAG-CTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
*
1961182 GTGAAG-TTCATGACAAGACGACTCGTTTTCTATTTTTCAC-ATTTTTG-AACTTTTTACGG-TT
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTT
*
1961243 --CATATTTTTTAAAA-TTTTTCAGAAGGA-TTTTGGCCCCCAAACTTGGTAGAACATGAT-CTT
196 GGGAT-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGG-CCCCAAACTTGGTAG-ACATGATCCTT
*
1961303 GTATTTTTTTTGGCA--TGCACAAAAAATTCAGCT-AAAACTCGAAGTGTACAGGATTTTGTGAC
258 GTATTTTTGTTGGCATGTGCA-AAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGAC
* * * *
1961365 CATTT--AAAATGTGTCCTCA-TTCGAAACAC-TTAATGGCTACTGGCAGC-AACCTGTAAAATA
322 CATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * *
1961425 TCAAATGCTCTTTAAAGGGGTGTAAGTTCTTGAAGTTTGATGAGGGATA-GGGGCCAATATAAGG
386 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
1961489 GCCAAGTACCAGCACCCATCACACATCAAGTGCGCACACCCACCCCAGCCCCCTCAATCGTCGGA
451 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CACCCTA-CCCCCCCAATCGTCGGA
* * * *
1961554 ACCTCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCCGACGATGGTG-TCCTAGGCGAAAAAAA
513 ACCCCAATGCCGCCGGTCAGG---T----T--T--TCCGGCGATGGTGCCCCGA-GCGAAAAAAA
* * * * *
1961618 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCACAACCCTTGGTCTGGTCCGATCAT
566 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTT
*
1961683 AGACT--G-A--AA------ATG---A-A-T-----T----T-CGTATGCCTAAGTCAACCCACA
631 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * *
1961722 AAACGAGCGTGCGGGCACTCAGCCAGCTAGAGGGGCAGGATGTGCAAGCCAGGGATCGGTAGGGT
696 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGT
* * * *
1961787 CCCCCTCAGCGTGCTGTCAATTCTGCTACTGCAACCCTC-GATCC-GATCCAATCTTAGACTGGG
761 CCCCCTCAGCGTGCTGTCGATCCTGCTACCGCAACCCTCAG-TCCAG-TCTAATCTTAGACTGGG
* * * * * * *
1961850 AATGAACTCGGTATGCCTACGTCAACCGACGAAACGAACGGGCTGGCGGGCGGGCACTACGTCAG
824 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGG
1961915 CC
889 CC
* * * * * * * *
1961917 AGAGAGACGAGATGCGTAAGCTGTGGATCGATATGCTGGTAAGTGGGTTTAGGCAGATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * ** * **
1961982 TTTTTGCCTTTTCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAAACTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * *
1962046 GTGAAGTTTCATGGCAAGACGACTCATTTTCT-TATTTTCATGA-TTTTGCAAACTTTTTACGAT
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT-TTTTCACGATTTTTG-AAACTTTTTACGGT
* * * * *
1962109 TCGGGA-TTTTTTCAAATTTTTTCAAGGAAGAAGTTTTGGCCCCCAAACTTGGTAGAGCAGGATT
194 TTGGGATTTTTTTAAAATTTTTTC-A-GAAGGAGTTTTGG-CCCCAAACTTGGTAGA-CATGATC
*
1962173 CTCGTATTTTT-TTGGCAT-TCAGCAAAAAAATTCAGCTAAAAAACGTCGAAGTGTACAGGATTT
255 CTTGTATTTTTGTTGGCATGT--GCAAAAAAATTCAGCT-AAAAAC-TCGAAGTGTACAGGA-TT
* * *
1962236 TGTGTGACCATGTTCG-AAAAAGTGTTGCCCA-TTCAGACACTTTAAAT--CGACTGGCTGCAAA
315 T-TGTGACCAT-TT-GAAAAAAGTG-TCCCCATTTCAGACACTTT-AATGGCTACTGGCAGCAAA
1962297 CCTGTAAAATCT--AATGCTCTTTAAGGGGGTGTGAGTTC-CTGAGGTTTGATGAGGGGATAAGG
375 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGA-GGGAT-AGG
1962359 GGGCCAATATAAGGGCCAAGT---A--ACCCA-CG--CA--A--T--GC-CAC-CCCT-------
437 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCTACCCCCC
* * * * ** * *
1962401 CAATTCGTCGGAACCCTAAATGCCCGTCGGTCAATGTTCTCGCGATGATGGTG-CCTG-CCGAAT
502 CAA-TCGTCGGAACCC-CAATG-CCGCCGGTC-AGGTTTTC-CGGCGATGGTGCCCCGAGCGAA-
* * **
1962464 CAAAAAATGCGGCATCCAGCACCATGGCCCGAG-CCAG-AT-CGCACCACCGTAACCCTCATTCC
561 -AAAAAATGCGGCA-CCAGCA-CAT-GCCCGAGCCCAGCATGTGCA-C-CCGCAACCCTCGGTCC
* * *
1962526 GATCTGATCTTAGACTAGGAATGAACTCCTGTATGCTTAGACTGGGAATGAACTATCC-TAATGC
620 GGTCCGATCTTAGACTGGGAATGAACTCC-GTATGCTTAGACTGGGAATGAAC--TCCGT-ATGC
* * * ** * * * *
1962590 CTTAGTCAACCCATGAAACGGGCGTGCGGGCGCTCAG-TAGCCAGAGGGGTA-AATGTGTAAGCC
681 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * ** * **
1962653 AGGGATCGGATCGGG-CCCCCTCA--GTGCTG-CTGATCCT-ATGTCGCAACCCAATCTGGTCTG
746 GGGGATCGG-TCGGGTCCCCCTCAGCGTGCTGTC-GATCCTGCTACCGCAACCC--TC-AGTCCA
* * * * *
1962713 GTC-GATC-TAGA-TGGGAATGAACTCC-TATGCCTAAG-CAA-CGA-G-AACAAACGGGTGAGC
806 GTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* *
1962770 AGGTGGGCACTACGCCGG-C
871 GGGCGGGCACTACGCCGGCC
* * *
1962789 AGA-AGGCGAGATGCGTAAG-CGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
1962852 -TT-TG-CATGCCAATG-CATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * ** *
1962913 GTGAAGTTTCATTGGCAAGACGACTTCATTTTCTATTTTTCACTATTTTCAAAACTTTTTACAGT
131 GTGAAGTTTCA-TGGCAAGACGAC-TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * ** *
1962978 TTCGGGATTTGTTTAAAA-TTTTTCAGGAA-GTGTTTTCACCCCAAACTTGGTGGACATGATCCT
194 TT-GGGATTTTTTTAAAATTTTTTCA-GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCT
** * * *
1963041 TCCAGTTTTT-TTGGCAT-TGCACAAAATTATTCAGCTAAAAACTCAAAGTGTACTGGATTTTGT
257 TGTA-TTTTTGTTGGCATGTGCA-AAAA-AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGT
* * *
1963104 GACCATTTGAAGAAAAGTGTCCCCATTTCAGACCCTTTAATGGCTACCTGGCAGTAAACC-ATAA
319 GACCATTTGAA-AAAAGTGTCCCCATTTCAGACACTTTAATGGCTA-CTGGCAGCAAACCTGTAA
*
1963168 AATTCTCAAAATGCTCTTTCAA-GGGGTGTGAGTTCTCGAAGGTTTGATGGGGGATA-GGGGCCA
382 AA-TCTC-AAATGCTCTTT-AAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGGGGGCCA
* * *
1963231 A-ATTATAGGGCCACCGTTCCAGCACCCATCGCAACATCATGT-CG--CACA----A-CCCCCAA
443 ATA-TA-AGGGCCA-AGTACCAGCACCCATCGC-ACATCATGTGCGCACACACCCTACCCCCCCA
* * * * * * *
1963287 ATTGTCGG-A-CCCAATTCCGTCGATCAGCGTTCTCCGACGAATCGGGTGCCTCGAGGCGAAAAA
504 ATCGTCGGAACCCCAATGCCGCCGGTCAG-GTTTTCCGGCG-AT--GGTGCCCCGA-GCG-AAAA
* * *
1963350 AAAATGCGGGCACCCAGACACATG-CCGAGCGCAGCATGTGCCCACCCGCAACCCTCGAATCCGA
563 AAAATGC-GGCA-CCAG-CACATGCCCGAGCCCAGCATGTG--CACCCGCAACCCTCG-GTCCGG
* * * * *
1963414 TCCCGATCGTTAGAATTGGGAATGAACTCTGTATGCTTATATTGGGAATGAACT-CAT-TGCCTA
622 T-CCGATC-TTAG-ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
1963477 AGTCAACCCATGAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCAGA
684 AGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGG
* * * * *
1963542 GGATCAGTCGGGT-CCCCTCAGCGTGCTGGCGATCCTGCTACCGCAACCCCTC-GTCCGGTCCAG
748 GGATCGGTCGGGTCCCCCTCAGCGTGCTGTCGATCCTGCTACCGCAA-CCCTCAGTCCAGTCTAA
* *
1963605 TCTTAGACTGGGAATGAACTCCTTATG-CTAAGCCAA-CGACGAAATGAGCGGGCGGAGCGGGCG
812 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG-GCGGGCG
1963668 GGCACTACGCCGGCC
876 GGCACTACGCCGGCC
* * *
1963683 AGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATATTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * **
1963748 TTTCTACCATGCCAATGCCAATTTTATGGCTTGTAAATTCATACAACAGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * * ** * *
1963813 GTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAATTTCAAAACTTTTTACTGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTT
* * * * * *
1963878 GGGATTTTTTTTAAATTTTTGCAGAAGGATTTTTGGCCCCAAACTTGGCAAACGTGATCCTTGTA
196 GGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
* * *** *
1963943 TTTTTTTTGACATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGAACAGGATTTTGTGACCATT
261 TTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATT
* * *
1964008 TAAAAAAAGTGTTCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
1964073 TGCTCTTTAA-AGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGTCAATATAAGGGCCAA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * ** ** *
1964136 GTACCAGCACCCATCACACATCAAGTGGGCACAC-CCCCCCGGCACCCCCAATCACCGGAACCTC
456 GTACCAGCACCCATCGCACATCATGTGCGCACACACCCTAC--C-CCCCCAATCGTCGGAACCCC
* * * **
1964200 AATGCCGTCGGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATGTTG
518 AATGCCGCCGGTCAGG---T----T--T--TCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGG
* ** *
1964265 CACCAGCACATGCCCAATACCAGTATGTGCACCCGCAA-CC-C--T-C-G---G-TC-----C--
572 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* *
1964313 -G-AT---CT--G-AT-CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
637 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * *
1964369 CCGTGCGGGCGCTCAACTGGCTAGAGGGGCAGGATGTGCAAGCCAGGGATCGGTAGGATCCCCCT
702 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* ** * * *
1964434 CAGCGTGTTGTCGATCCTGCTACCGCAACCCTTGGTCCAGTCTGATCTTAGAATAGGAATGAACT
767 CAGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACT
* * **
1964499 CCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGGCGGGCACTACGCCAACC
832 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* * * * *
1964558 AGAGAGACGGGATGCGCAAGTCATGGATCGATATGGTGGTAGGTGGGTTTAGGCAGATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
1964623 TTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * *
1964688 GTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTT
* ** * *
1964753 GAGATTTTTTTAAAATTTTTTCAGAACAAGTTTTGGCCCCAAACTTGGTAGACGTGATTCTTGTA
196 GGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
* * ** *
1964818 TTTTTTTTGCCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATT
261 TTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATT
* * *
1964883 TG-AAAAAGTGTCCCCATTCCGGACACTTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
1964947 TGCTCTTTAAGGGGGTGTGTGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAA
391 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
1965012 GTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCACCGCCCCCCAATCATCGGAACCCTA
456 GTACCAGCACCCATCGCACATCATGTGCGCACACACCCTA-C-CCCCCCAATCGTCGGAACCCCA
* * * * * * * *
1965076 ATCCCACCAGTCAGGTTCTCCTGTGATGGTGCCCCG-GCAAAAAAAAATGTGGCACCAG----T-
519 ATGCCGCCGGTCAGGTTTTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGGCACCAGCACATG
* * * * * ** * *
1965135 ----A--CTAGCATGTGCACCCGTAACCCTTGATCCAGTTTGATCTTAGACTAGGAAAGAACTCC
584 CCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * * ** ** *
1965194 ATATGCTTAGATTGGGAATGAACTCCATATGGCTAAGTCAATGCACGAAATAAGCGTGCGGGTGC
649 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * ** * * * * * *
1965259 TCTGTCGGCCA-TTGGCCAGGATGCGCAAGCCAGGAATAGGCCGGGTCCCCCTCAGCGTGCT-AC
714 TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGTC
* * * * * ** * * *
1965322 TGATCCTGATGCCACAACCGTCGGTCTGGTCTGATCTTATACTAGGAATGAACTCCGTATGCCTA
779 -GATCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
1965387 AGCTAACCGATGAAAC-A---AGCGGGCAGGCGGGCACGACGTCGGCT
843 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
*
1965431 AGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * * *
1965496 TTTTTGTCGTGCCAATGCCATTTTTATGGCCTGTAAATTCATACAATTGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * * * *
1965561 GTGAAGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTATGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTT
* *
1965626 GGGAGTTTTTTT--AATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
196 GGGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
* ** * *
1965689 ATTTTTGTGGGCATGCACAAAAAAGTTCAGCTAAAAAGTCGAAGTGTACAGGATTTTGTTGACCA
260 ATTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTG-TGACCA
* *
1965754 TTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
1965819 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
1965884 AAGTACCGGCACCCATTGCACATCATGTGCGCACACCCCCTGGCCCCCCCAATCGTCGGAACCCC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCT-ACCCCCCCAATCGTCGGAACCCC
* * * *
1965949 AATGTCGCCGGTCAGGATCTCCGATGATGCTCCAGCGATGGTGGCCC-AGGCGAAAAAAAATACG
518 AATGCCGCCGGTCAGG---T----T--T--TCCGGCGATGGTGCCCCGA-GCGAAAAAAAATGCG
** * * * *
1966013 GCACCAGCACATGCTTGATCCCAGCATGTGCACCCGTAACCCTCAGTCCAGTCCGATC-T----T
571 GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
**
1966073 ----A-G-ACT--G---GC--A-A-T--GAAT----TCCGTATGCCTCCGTCAACCCACGAAACG
636 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * **
1966117 AGCATGCGAGCACTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCC
701 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * * * * **
1966182 TCTGCGTGCTGCCGATCTTCCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAAC
766 TCAGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAAC
* * * *
1966247 TCCGTATGCCTAAGCCAACCGATGAAACAACCGGGCGGGCGGGCGGGCACTACGTCGGCC
831 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* *
1966307 AGAGAAGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1966372 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-CACTTCA
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC-CTTCA
* * ** *
1966436 TGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTCTACGGTT
130 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* * *
1966501 TGGGATTTTTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACCTGATCCTTG
195 TGGGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
* * * *
1966566 TATTTTTATTGTCATATGCAAAAAAATTCAGCTGAAAACTCGAAGTGTACAGGATTTTGTGACCA
259 TATTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
* * * * *
1966631 TTTGAAAAAACTATCCCCATTTTAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
1966696 AATGCTCTTTAAGTGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATAAATAGGGC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA-AGGGC
* * * * *
1966761 CAAGTACCAGCACCCATCGCACATCATTTGCGCACACACCCTACCCCTCTAATCGCCAGAACCCC
453 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCTACCCCCCCAATCGTCGGAACCCC
** * **
1966826 AATGCCATCGGTCAGGTTTTCCGGCGCTGACGCCCCGAGCGAAAAAAAATGCGGCACCAGCACAT
518 AATGCCGCCGGTCAGGTTTTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGGCACCAGCACAT
* * * *
1966891 GCGCTAGCCCAGCATGTGCACCTGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
583 GCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * *
1966956 CGTATGGTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCA
648 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
1967021 CTCAGCCGGCCAGAGGGCCAGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTCAGTGTGCTGT
713 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGT
* * * *
1967086 CGATCTTGCTACCGCAATCCTTAGTCCAGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTA
778 CGATCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* *
1967151 AGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCAGCC
843 AGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
*
1967199 AGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
1967264 TTTATGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATG-CTTCA
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-GCCTTCA
1967328 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
130 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* * *
1967393 TGGGATGTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTCGACATGATCCTTGT
195 TGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
* *
1967458 ATTTTTGTTGGCTTGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
260 ATTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
* * *
1967523 TTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
1967588 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATACGGGGCCAATATAAGGGCCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
1967653 AGTACCAGCACCCATCGCACATCATGTGTGCACAC-CCCTCCGGCCCACCCAATCGCCAGAACCC
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACACCCTAC--CCC-CCCAATCGTCGGAACCC
* * * * *
1967717 CAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCAATGGTCCCCG-GCGGAAAAAAATACAG
517 CAATGCCGCCGGTCAGGTTTTCCGGCGA-----TGG---T-G-CCCCGAGCGAAAAAAAATGCGG
* * * *
1967781 CACCAGCACATGCTCAAGCCCAGCATGTGCTCCTGCAA----C---CC--T-CGA---T---C--
572 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
*
1967828 ----TG-A-TCCG-AT-CTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
637 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* *
1967885 GCGTGCGGGCACTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
702 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* * * * * *
1967950 CAGCGTGCT-ACTGATCCTGCTGCTGCCACCCTCAGTTCAGTCTATTCTTAGA-TAGGGAATGAA
767 CAGCGTGCTGTC-GATCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACT-GGGAATGAA
* * * * ** * ***
1968013 CTCCTTCTGGCTAAGCCAACCGATGAAACGA----GTAGGCGGGTGGGCACTACGTAAGCC
830 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* * * * *
1968070 AGAGAGGCGGGATGCGCAAGCCATGGATCGATA-AGTCGTAGGTGGGTTTTGGCACATCTTCAAA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
1968134 TTTTTGCAATGCCAAGGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
*
1968199 GTGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTT
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTT
* ** *
1968264 GAGATTTTTTTTTAATTGTTTTC-GAAGGAGTTTTGGCCCCAAACTTTGTAGACATGATCCTTGT
196 GGGATTTTTTTAAAATT-TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
** *
1968328 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACCAT
260 ATTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
* *
1968393 TTGAAAAAAGTGTTCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * *
1968458 ATGCTCTTTAAGTGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATAAATAGGGCC
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA-AGGGCC
* * * * *
1968523 AAGTACCAGCACCCATCGCACATCATTTGCGCACACACCCTACCCCTCTAATCGCCAGAACCCCA
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCTACCCCCCCAATCGTCGGAACCCCA
** * **
1968588 ATGCCATCGGTCAGGTTTTCCGGCGCTGACGCCCCGAGCGAAAAAAAATGCGGCACCAGCACATG
519 ATGCCGCCGGTCAGGTTTTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGGCACCAGCACATG
* * * *
1968653 CGCTAGCCCAGCATGTGCACCTGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
584 CCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
1968718 GTATGGTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCAC
649 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * *
1968783 TCAGCCGGCCAGAGGGCCAGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTCAGTGTGCTGTC
714 TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGTC
* * * *
1968848 GATCTTGCTACCGCAATCCTTAGTCCAGTCTAATCTTAGACTGGGAATGAACTCAGTATGCCTAA
779 GATCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
1968913 GCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCAGCC
844 GCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* *
1968960 AGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
1969025 TTTATGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATG-CTTCA
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-GCCTTCA
1969089 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
130 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* * *
1969154 TGGGATGTTTTTAAAATTTTTTCAGAAGAAGTTTTGGCCCCAAACTTGGTCGACATGATCCTTGT
195 TGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
* *
1969219 ATTTTTGTTGGCTTGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
260 ATTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
1969284 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * *
1969349 ATGCTCTTTAAGGGGCTGTGAGTTCTCCAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCG
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * ** * *
1969414 AGTACCAGCACCCATCGCACATCATGTGCGTAGAC-CCCGCCGCCCCCCAATTGTCGGAACCCCT
455 AGTACCAGCACCCATCGCACATCATGTGCGCACACACCCTAC-CCCCCCAATCGTCGGAACCCCA
* *
1969478 ATGCCGCCGGTCAGGTTCTCCGACGATGGTGCCCC-AGGCGAAAAAAAATGCGGCACCAGCACAT
519 ATGCCGCCGGTCAGGTTTTCCGGCGATGGTGCCCCGA-GCGAAAAAAAATGCGGCACCAGCACAT
* * * *
1969542 GCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGACTGAACTC
583 GCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* ** * *
1969607 CGTATGCTTAGACT-AGAATGAACTGTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCG
648 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * ** * * *
1969671 CTCAGTCGGCCA-ATAGGGCATGATGCTCAAGTTGGGGATCGGACGGGTCCACCTCTGCGTGCT-
713 CTCAGCCGGCCAGA-GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTG
* * *** * ** * * *
1969734 ACTGATCCTGCTGCTATAACCCTCAATCTGGTCCAATCTTAGACTGAGAATGAACTACGTATGCC
777 TC-GATCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
1969799 TAAGCCAATCGACAAAACGAGCAGGCGGGCGGGGCGGGCACTACGCCGGCC
841 TAAGCCAACCGACGAAACGAGCGGGCGGGC-GGGCGGGCACTACGCCGGCC
* * *
1969850 AAAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
** *
1969915 TTTCTATCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
*
1969980 GTGAAGTTTCATGGCAAGACGACTC-TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTT
* * *
1970044 GAGATTTTTTT-AAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTA
196 GGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
1970108 -TTTT-TTGGCATGT-CAAAAAAATTCAGCTAAAAACTCGAAGTGTA-AGGATTTTGTGACCATT
261 TTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATT
1970169 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCCTGTAAAATCTCAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA-CCTGTAAAATCTC-A
1970234 AATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-ATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
1970297 AAGTA-CAGCACCCATCGCACATCATGTG-GCACACCACCTCTCGGCCCCCCCAATCG-C-GAAC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CACC-CT--ACCCCCCCAATCGTCGGAAC
* * *
1970358 CCCAATGCCGTCGGTCAGGTTCTCCGTACGATGCTCCGCGATGGTGCCCCGGGCGAAAAAAAATG
515 CCCAATGCCGCCGGTCAGG-T-T---T----T-C-CGGCGATGGTGCCCCGAGCGAAAAAAAATG
* * *
1970423 C-GCACAAGCACATGCCCGAGCCCAGCTATGTGCAACCCGCAA-CCTC-GTCTGGT-CAATCTTA
569 CGGCACCAGCACATGCCCGAGCCCAGC-ATGTGC-ACCCGCAACCCTCGGTCCGGTCCGATCTTA
* * *
1970484 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTGAACCCACAA
632 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * *
1970549 AACGAGCGTGCGGGTGTTCAGCCGGCCAGA-GGACAGGATGCGTAACCCGGGGATCGGTCGGGTC
697 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTC
* * * * * * ** * * *
1970613 CCCCTCTA-CATGCTGCCAATCCTGTTGCCGCAACCCTCGGTCTGGTCTGATCTTAAACTGGAAA
762 CCCCTC-AGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAA
* * * * **
1970677 TGAACTCTGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCAGGTAGGCACTACGCCGGCC
826 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
*
1970742 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* **
1970807 TTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTTGTACAATGGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * *
1970872 GTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTTAAAACTTTTTATC-GTT
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA-CGGTT
* * * *
1970936 CGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGTTAGACGTGATCCTTAT
195 TGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
* ** * * *
1971001 ATATTTTGTTGTCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACATGATTTTTTGACCA
260 AT-TTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA
1971066 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
1971131 AATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
389 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
1971195 AAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCTA-CCCCCTAATCG-CTAGAACCCC
454 AAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCTACCCCCCCAATCGTC-GGAACCCC
** * * * *
1971258 AATGCCGCCCATCAGGTTCTCCGGCGATGGTGCCCCGGGCAAAAAAAAAAGCGGCACCAGCACAT
518 AATGCCGCCGGTCAGGTTTTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGGCACCAGCACAT
* * * *
1971323 GCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGACTGAACTC
583 GCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* ** * *
1971388 CGTATGCTTAGACT-AGAATGAACTGTGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCG
648 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * ** * * *
1971452 CTCAGTCGGCCA-ATAGGGCATGATGCTCAAGTTGGGGATCGGACGGGTCCACCTCTGCGTGCT-
713 CTCAGCCGGCCAGA-GGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTG
* * *** * ** * * *
1971515 ACTGATCCTGCTGCTATAACCCTCAATCTGGTCCAATCTTAGACTGAGAATGAACTACGTATGCC
777 TC-GATCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
1971580 TAAGCCAATCGACAAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCC
841 TAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
* * *
1971630 AAAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCACATCTTCATA
1 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
** *
1971695 TTTCTATCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
66 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* *
1971760 GTGAAGTTTCATGGCAAGACGACGCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTT
131 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTT
* ** * *
1971825 GAGATTTTTTTTTAATTATTTTC-GAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGT
196 GGGATTTTTTTAAAATT-TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
* **
1971889 ATTTTTGTTGGCCTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
260 ATTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCAT
*
1971954 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAA
325 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * *
1972019 ATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATTAGGGATTGGGGACCAATATAAGGGCCA
390 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
1972084 AGTACCGGCACCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCCGAATCATC-GAACCCC
455 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CACCCT-ACCCCCCCAATCGTCGGAACCCC
* * * * **
1972148 AATGCCGCCAGTCAGGTTCTTTGGCGTTGCTCCGACGATGGTGGCCCGAGCAAAAAAAAATATGG
518 AATGCCGCCGGTCAGG-----T----TT--TCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGG
* * * * *
1972213 CACCAGCCCATGCCCGAGCCAAGCATGTGCACCCGTAACCCTCGGTCCAGTCTGATCTTAGACTG
572 CACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* *
1972278 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
637 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * *
1972343 GCATGTGGGCACTCAGTCGGCCAGAGGAGTAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCT
702 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT
* * *
1972408 CAGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACT
767 CAGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACT
* *
1972473 CCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGTGGGCGGGCACTACG-CGGCC
832 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
1972531 AGAGAGGCGGGATGCGCAAGCCGTG
1 AGAGAGGCGGGATGCGCAAGCCGTG
1972556 TGTCACGGAC
Statistics
Matches: 9840, Mismatches: 1183, Indels: 936
0.82 0.10 0.08
Matches are distributed among these distances:
850 4 0.00
851 2 0.00
852 42 0.00
853 11 0.00
854 31 0.00
855 8 0.00
856 2 0.00
857 2 0.00
858 4 0.00
859 20 0.00
860 54 0.01
861 169 0.02
862 16 0.00
863 114 0.01
864 100 0.01
865 65 0.01
866 115 0.01
867 119 0.01
868 62 0.01
869 98 0.01
870 441 0.04
871 169 0.02
872 271 0.03
873 373 0.04
874 444 0.05
875 645 0.07
876 435 0.04
877 363 0.04
878 266 0.03
879 69 0.01
880 11 0.00
881 80 0.01
882 62 0.01
883 105 0.01
884 169 0.02
885 147 0.01
886 313 0.03
887 329 0.03
888 575 0.06
889 282 0.03
890 492 0.05
891 624 0.06
892 621 0.06
893 225 0.02
894 148 0.02
895 83 0.01
896 92 0.01
897 181 0.02
898 142 0.01
899 124 0.01
900 61 0.01
901 204 0.02
902 200 0.02
903 9 0.00
904 15 0.00
905 3 0.00
906 10 0.00
907 3 0.00
908 8 0.00
910 2 0.00
911 6 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTT
GGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
TTTTTGTTGGCATGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
GTACCAGCACCCATCGCACATCATGTGCGCACACACCCTACCCCCCCAATCGTCGGAACCCCAAT
GCCGCCGGTCAGGTTTTCCGGCGATGGTGCCCCGAGCGAAAAAAAATGCGGCACCAGCACATGCC
CGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGTCGA
TCCTGCTACCGCAACCCTCAGTCCAGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCC
Found at i:1968727 original size:26 final size:26
Alignment explanation
Indices: 1968698--1968748 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
1968688 CGGTCCGATC
*
1968698 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTAGGAATGAACTCCGTATGG
1968724 TTAGACTAGGAATGAACTCCGTATG
1 TTAGACTAGGAATGAACTCCGTATG
1968749 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGG
Done.