Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168015.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_27, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15675301
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 118000 characters in sequence are not A, C, G, or T
File 18 of 93
Found at i:1970516 original size:26 final size:26
Alignment explanation
Indices: 1970480--1970532 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1970470 TCTGGTCAAT
*
1970480 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
1970506 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
1970532 C
1 C
1970533 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:1972305 original size:26 final size:26
Alignment explanation
Indices: 1972269--1972321 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1972259 CCAGTCTGAT
1972269 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
1972295 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
1972321 C
1 C
1972322 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:1980231 original size:864 final size:862
Alignment explanation
Indices: 1978237--1987479 Score: 11269
Period size: 869 Copynumber: 10.5 Consensus size: 862
1978227 GCTCATGACA
1978237 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
1978302 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAT
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
1978367 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTT
* *
1978432 CAGAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCC-TGTATTTTTGTGGGCATGCACAAAA
196 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
** *
1978496 AAATTCAG-TCAAAAACGCGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
261 AAATTCAGCT-AAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
1978560 CAGACACTTTAATGGCAACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
325 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
1978625 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACA
390 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * * ** * * * *
1978690 TCATGTGCGCACACCCCC---CG--GCCACCCTAATCGCCGAAC-CCCA-ATGCTGCCGTCAGGT
455 TCATGTGCGCACACCCCCAATCGTCGGAACCCCAAT-GCCG-TCGGTCAGGTTCT-CCGAC-GAT
* * *
1978748 TCTCCGACGATGGTGCCCCGGGCAAAAAAAATGCGACACCAGCACATGCTCGAG-CCAGCATGTG
516 GCTCCGACGATGGTGCCTCGGGCAAAAAAAATG-GACACCAGCACATGCCCGAGCCCAGCATGTG
* * * **
1978812 CACCCGCAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCCGCATGCCTAAGTCAACC
580 CACCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
*
1978877 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTC
645 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTC
*
1978942 GGGT-CCCCTCAGCGTGCTGCCGATCCTGCTACCGCAA-CCTCAGT-TCGGTCTGATCTTAGACT
710 GGGTCCCCCTCAGCGTGCTGCCGATCCTGCTA-CGCAACCCTCAGTCT-GGTCTAATCTTAGACT
* *
1979004 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGAGCGGGCAGGCAGGCGGGCACTACG
773 GGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAACGAGCGGGCGGGCGGGCGGGCACTACG
1979069 CCGGCCAGAGAGGCGGGATGCGCAAG
837 CCGGCCAGAGAGGCGGGATGCGCAAG
*
1979095 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
1979160 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * ** *
1979225 GATTCCTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAATTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-TAAATTTTT
* *
1979290 TCA-AAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAA
195 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
1979354 ACAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
260 AAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
1979419 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
325 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
1979484 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-CTGCAC
390 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCAC
* * **
1979548 ATCATGTGCGCACA-CCCCAATCGTCAGAACCCTAATGCCGTCTTTCAGGTTCTCCGACGATGCT
454 ATCATGTGCGCACACCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
*
1979612 CCGACGATGGTGCCTCGGGCAAAAAAAAT-G-CACCAGCACATGCCCGAGCCCAGCATGTGCACT
519 CCGACGATGGTGCCTCGGGCAAAAAAAATGGACACCAGCACATGCCCGAGCCCAGCATGTGCACC
* * *
1979675 CGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACA
584 CGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACG
* * * * **
1979740 AAATGAGCATGCGGCGCGCTCAGCTGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGTCGCA
649 AAACGAGCGTGCGG-GCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGG
* *
1979805 TCCCCCTCAGCGTGCTGCCAATCCTGCTACGCAACCCTCAGTCCGGT-TCAATCTTAGACTGGGA
713 TCCCCCTCAGCGTGCTGCCGATCCTGCTACGCAACCCTCAGTCTGGTCT-AATCTTAGACTGGGA
* * *
1979869 ATGAACTCCGTATGCCTAAGCCAACCAACAAAATGAGCGGGCGGGCGGGCGGGCGAGCACTACGC
777 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--G-G-GCACTACGC
**
1979934 CGGCCAGAGAGGCGATATGCGCAAG
838 CGGCCAGAGAGGCGGGATGCGCAAG
*
1979959 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* ** * *
1980024 TTTCTATTTCTTGTAAATTCATACAATGGTCCATTAAGCCTTCATGTGAAGTTTCATGGCAAGAT
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* *
1980089 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGGGATTTTTTTTAATTTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTT
* * *
1980154 CATAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCAAAAAA
196 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
1980219 AAATTAAGCTAAAAACTTGAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
261 AAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* ** *
1980284 AAACACTTTAATGGCTACTGGCAGCAAACCCATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
326 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
1980349 TTCTCGAGGTTTGATGAGGGATAGGGGGCCTATATAAGGGCCAAGTACCAGCACCCATCGCACAT
391 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
1980414 CATGTGCACGCACCCCCCGGCCCCCTAATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGA
456 CATGTG--CGCA-----C-ACCCCC-AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* * *
1980479 CGATACTCCGACGATGGTGCCTCGGGTGAAAAAAAATATGACACCAGCACATGCCCGAGCCCAGC
512 CGATGCTCCGACGATGGTGCCTCGGG-CAAAAAAAAT-GGACACCAGCACATGCCCGAGCCCAGC
* * * * * *
1980544 ATGTGCACCCACAACTCTCGGTCCCGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGT
575 ATGTGCACCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGT
* * **
1980609 CAACCCACGAAACGAGTGTACGGGCGCTCAGTTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
640 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * * * *
1980674 CGGTCGGGTCCCCCTCAGTGTGCTGTCGATCCTGCTGTCGTAACCCTCAGTTTGGTCTGATCTTA
705 CGGTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCT-ACGCAACCCTCAGTCTGGTCTAATCTTA
* * *
1980739 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGGCGGGCACT
769 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACT
* * *
1980804 ACGTCGGCCAAAGAGGCGAGATGCGCAAG
834 ACGCCGGCCAGAGAGGCGGGATGCGCAAG
* * * *
1980833 CCATGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCAAGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
1980898 -TTTTATGGCTTGTAAATTCAATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
66 TTTTTATGGCTTGTAAATTC-ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
*
1980962 CTGA-TC--TTTCTATTTTTCATGA-TTTTCAAACTTTTTTACGGTTCGGGATTTTTTTAAATTT
130 C-GACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTACGGTTCGGGATTTTTTTAAA-TT
* *
1981023 TTTTCAAAAGGAGTTTTGCCCCCAAACTTGGTAGAACGTGATCCTTGTATTTTTGTTGGCATGCA
192 TTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGCA
*
1981088 CAAAAAAATTCAGCT-AAAACTCGAAGTGTACAGGATTTTGTG-CCATTTGAAAAAAGTGT-CCC
256 CAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCC
1981150 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT-AAATCTCAAATGCTCTTTAA-GGGGT
321 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
1981213 GTGAGTTCTC-AAGTTTGATGAGGGATA-GGGGCCAATATAAGGGCC-AGTACCAGCACCCA-CT
386 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-
1981274 GCACATCATGTGCGCACACCCCCTCAGCCCCCCAATCGTC-GAA-CCCAATGCCGTC-GTCAGGT
450 GCACATCATGTGCG--CA------CA--CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGT
*
1981336 TCTCCGACGATGCTCCGAC-ATGGTGCCTCGAGGCAAAAAAAAATGCGACACCAGTACATGCCCG
505 TCTCCGACGATGCTCCGACGATGGTGCCTCG-GGC-AAAAAAAATG-GACACCAGCACATGCCCG
*
1981400 AGCCCAGCATGTGCACCCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAATGAACTCCGTAT
567 AGCCCAGCATGTGCACCCGCAA--C-C----C--T-CAGTC-----C---G---G---TCCG-AT
*
1981465 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
607 -CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
1981530 TCGGCCAGAGGGGCAGGATGCGCAAGCCAGGCATCGGTCGGGTCCCCCTCAGCGTGCTGCCGATC
671 CCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTGCCGATC
* * ** * *
1981595 CAGCTGCCGCAACCCTTGGTCTGGTCCAATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCA
736 CTGCT-ACGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
1981660 ACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
800 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* *
1981723 CCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCCATGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * *
1981788 TTTCTACGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
1981853 GACTCGTTTTCTATTTTTTACA-G-TTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAATAT
131 GACTCGTTTTCTA-TTTTT-CATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-TAAATTT
* * * * * *
1981916 TTTCAGATGGATTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCACGCGCA
193 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
1981981 AAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
258 AAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
1982046 TCCAGACACTTTAATGGCTTCTGGCAGCGAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
323 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
1982111 GAGTTCTTGAGGTTTGATCAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATCGCA
388 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
1982176 CATCATGTCTGCACACCCCTCAGCCCCCCTAATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCT
453 CATCATG--TGCGCA-----CA--CCCCC-AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * **
1982241 CTGACGATGCTCCGGCGATGGTGCCCCGGGCGAAAAAAAATACGG-CAAGAGCACATGCCCGAGC
508 CCGACGATGCTCCGACGATGGTGCCTCGGGC-AAAAAAAAT--GGACACCAGCACATGCCCGAGC
* * * *
1982305 CCAGCATGTGCACCTGCAA-CCTCAGTCCGGTGCGAACTTAGACTGGGAATGCACTCCATATGCC
570 CCAGCATGTGCACCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCC
* * *
1982369 TAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGCCCGCCAGAGGGGCAGGATGCGCAAGCCG
635 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
* * * * * *** * * * *
1982434 GGGAT-TGACTGGGTCCCCTTAAGTGTGCTATTGATCTTGCTGCTGCAACCCTCAATCTGGTCTG
700 GGGATCGGTC-GGGTCCCCCTCAGCGTGCTGCCGATCCTGCTAC-GCAACCCTCAGTCTGGTCTA
* * *
1982498 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC-A---AGCGGGCAGGCG
763 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * *
1982559 GGCACTACGTCGGCCAGAGGGGTGGGATGCACAAG
828 GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* * * * **
1982594 TCGTGCATCGATAGGGTGGTATGTGGGTTTAGGCACATATTCATATTTCTGCCATGGAAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* *
1982659 TTTTTACGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTCCATGGCAAGAC
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * **
1982724 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCATGATTTTTTTAAAATTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT-AAATTTTT
* *
1982789 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAAGCACAAA
195 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
1982854 AAAATTCAGCTAAAAACTCT-AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
260 AAAATTCAGCTAAAAACT-TGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
1982918 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGGTGTG
324 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
1982983 AGTTCTTGAGGTTTGATGAGGGTTA-GAGGCCAACATAAGTGCCAAGTACCAGCACCCATCGCAC
389 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
1983047 ATCATGTGCGCACACCCCCCAGCCCCCCCAGTTGCCGGAACCCCAAAGCCGTCGGTCAAGTTCTC
454 ATCATGTGCGCACA-CCCCCA--------A-TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * ** * *
1983112 CGGCAATGCTCTAACGATGGTCCCT-GGGCAAAAAAAATGCCACACCAGCACATGCCCGAGCCCA
509 CGACGATGCTCCGACGATGGTGCCTCGGGCAAAAAAAATG-GACACCAGCACATGCCCGAGCCCA
* * * * **
1983176 GCATGTGCATCTGTAACCCTC-GGCCTGGTCTAATCTTAGACTGGGAATGAACTCCGA-ATGCCT
573 GCATGTGCACCCGCAACCCTCAGTCC-GGTCCGATCTTAGACTGGGAATGAACTCC-ATATGCCT
* * * **
1983239 AAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCTGGCCAGAGGGACAGGATGCGCAAGCTAG
636 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGG
* * * * ** ** *
1983304 GGATCGGTTGGGTCCCCATCAGCGTGCTGCCGATCTTGCTGCCGCAACCCTTGGTCCAGTCTGAT
701 GGATCGGTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCT-ACGCAACCCTCAGTCTGGTCTAAT
* * *
1983369 CTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACGAAA-TA---AGCGGGCGGGCGGG
765 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * *
1983430 CACTACGTCGACCAAAGAGGCGGGATGC-CAAG
830 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* * * * ** *
1983462 CTGAGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCACATTT-TTACGTGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* *
1983526 TTTTTATGGCTTGTAGATTCATACAATGGTCCCTTAAGCCTTCATGTGAACTTTCATGGCAAGAC
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
1983591 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCGGTATTTTTTAAAATTTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTT
*
1983656 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
196 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
1983721 CAATTCAGCTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTGAACAAAGTGTCCCCATTTT
261 AAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
1983786 AGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
326 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
1983851 TTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
391 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
1983916 CATGAGCGCACACCCCCCGGCCCCCCAATCGACGGAACCCCAATGCCG-CTGGTCAGGTTCTCCG
456 CATGTGCGCACA---------CCCCCAATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCG
* * *
1983980 ACGATGCTCCGACGATGGTGCCCCGAGCAAAAAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
511 ACGATGCTCCGACGATGGTGCCTCGGGC-AAAAAAAATGGA-CACCAGCACATGCCCGAGCCCAG
*
1984045 CATGTGCACCCGCAACCCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGA
574 CATGTGCACCCGCAA-CC-C--T-CAGT-C---C---------G---G---TCC-GAT-CTTAGA
* * *
1984110 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCTTACGGGTGCTCAGCCGGCCA
613 CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* ** * * * *
1984175 GAGGGGTAGGATGCTTAAGCTGGGGATCGATTGGGTCCCCCTCAG-GATGCTGCCGATCCTACTG
678 GAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGCG-TGCTGCCGATCCTGCT-
* * * * * *
1984239 CCCCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATAAAC-CCGTATGCCTAAGCCAACCGAC
741 ACGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * * * * * *
1984303 -AAA--A-TGAGCGGGCGGGCGAGAACTACACTGGCCTGAGAGGCAGGATGCACAAG
806 GAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* * **
1984356 CCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATATCTGCTGTGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
*
1984421 TTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
** *
1984486 GACTCGTTTTCTATTTTTCAACATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT-AAATTTTT
** * *
1984551 TCAGAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAA
195 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
1984616 ACAATTCAGCTAAAAACTTGAAGTGTATAGGATTTTGTGACCATTTGAACAAAGTGTCCCCATTT
260 AAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
1984681 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGA
325 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
1984746 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
390 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** *
1984811 TCATAAGCGCACACCCCCCGGCCCCCCCAATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCC
455 TCATGTGCGCACA----------CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * * *
1984876 GATGATACTCCGACGATGGTGCCTCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCTA
510 GACGATGCTCCGACGATGGTGCCTCGGG-CAAAAAAAATG-GACACCAGCACATGCCCGAGCCCA
*
1984941 GCATGT------GC-ACCCTC-GATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
573 GCATGTGCACCCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTA
* * * * *
1984998 AGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGTCGGCCAAAGGGGTAGGATGCGCAAGCCGGG
637 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGG
* * * * * ** *
1985063 CATCGGTCGGGTCCCCTTCAGTGTGCTGCCGATCCTGCTGCTACAACCCTTGGTCTGGTCTGATC
702 GATCGGTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTAC-GCAACCCTCAGTCTGGTCTAATC
* * *
1985128 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCAGGCGGGCGGGC
766 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGC
* *
1985193 ACTACGCCGGCTAGAGAGACGGGATGCGCAAG
831 ACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* * *
1985225 CCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATACTTCTACCATGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * * * *
1985290 GTTTTATGGCTTGTAAATTCATACAATGTTCCGTTAGGCCTTCATGTGAAGTTTCATGGCAAGAT
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* ** *
1985355 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTCACGGTTCGGGATTTTTTTAAAATTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT-AAATTTTT
** * * * *
1985420 TCAGAAATAATTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTTGTTGGCATGCATAAA
195 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
1985485 AAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
260 AAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
1985550 CAGACACTTTGATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGA
325 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
1985615 GTTCGCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACA
390 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
1985680 TCATGTGCGCACACCCCTCGGCCCCCCCAATCATCGGAACCCCAATGCTGTCGGTCAGG-T-T--
455 TCATGTGCGCACA----------CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * ** *
1985741 --C--T--T-CGACGGTGGTGCCCCGGGCGAAAAAAAAATGCGGCACCAGCACATGCTTGAGCCT
510 GACGATGCTCCGACGATGGTGCCTCGGGC--AAAAAAAATG-GACACCAGCACATGCCCGAGCCC
* * *
1985799 AGCATGTGCACTCACAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTA
572 AGCATGTGCACCCGCAA-CC------C--TCAG-TC-----C--GG--T---C--CG-AT-CTTA
* * *
1985864 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-GAAGCGTGCGGGTGCTCAGCCGG
611 GACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACG-AGCGTGCGGGCGCTCAGCCGG
* * * * * * * *
1985928 CCAGAGGGGCATGATGTGCAAGCCGGGGATCGATCGGGTTCCCCTCTA-AGTACTGTCAATCCTG
675 CCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTC-AGCGTGCTGCCGATCCTG
* * *
1985992 CTACCACAACCCTCAGTCTGAT-TCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
739 CTA-CGCAACCCTCAGTCTGGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
1986056 CGACGGAATGA----ACGGGCGGGCGGGCACTACGCCAGCAAGAGAAGCGGGATGCGCAAG
802 CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* * *
1986113 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCACGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * * *
1986178 TTTTTATGGCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCATGTGAAGTTTCATGCCAAGAT
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* * *
1986243 GAATCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTCAAATTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT-AAATTTTT
* * *
1986308 TCAGAAGGAATTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCATGCACAAA
195 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * *
1986373 AACATTTAGCTAAAAACTTGAACTGTAAAGGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTT
260 AAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
1986438 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGA
325 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
1986503 GTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCCAGTACCAGCACCCATCGCACA
390 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
1986568 TCATGTGCGCACACCCCCCACCCTTATCATCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGAC-
455 TCATGTGCGCACA-CCCCCA-----ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * * *
1986632 ATGGTGCC-CCGA----G--T---GAAAAAAAAAAGTGACACCAGCACATGCCCGAGCCCAGCAT
514 ATGCT-CCGACGATGGTGCCTCGGGCAAAAAAAATG-GACACCAGCACATGCCCGAGCCCAGCAT
* *
1986687 GTGCACCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTG
577 GTGCACCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAA---C---T-C-----C--
* * * ** * *
1986752 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGTAGGCGCTCAGCCGGCTAGAT
628 -------A-----TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * ** * ** * * * * *
1986817 GGGTAGGATACTG-AAGATGAGGATCCATCGGTTCCCCCTCTA-CCTGTTGCTGATCCTACTATC
681 GGGCAGGATGC-GCAAGCCGGGGATCGGTCGGGTCCCCCTC-AGCGTGCTGCCGATCCTGCTA-C
*
1986880 GCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
743 GCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-
* *
1986945 AACGAGCGGACGGGCGGGCGGGCGGGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAAG
807 AA--A-C-GA---GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAG
* *
1987008 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCTATGCCAATGCCA
1 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * *
1987073 TTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCGTGGGAAGAC
66 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
**
1987138 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCATGATTTTTTTAAAATTTTT
131 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT-AAATTTTT
* ** *
1987203 TCAGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TCTCCCATGCATAA
195 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAA
* *
1987267 AAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTCTGTGACCATTTGAAAAAAGTGTCCCCATT
259 AAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * * *
1987332 TCAGACACTTTAATGCCTATTGGCAGCAAACTTGTAAAATCTCAATTGCTCTTTAAGGGGGAGTG
324 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
1987397 AGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAT
389 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
1987462 ATCATGTGCGGACACCCC
454 ATCATGTGCGCACACCCC
1987480 TCCGACCCCT
Statistics
Matches: 7375, Mismatches: 726, Indels: 532
0.85 0.08 0.06
Matches are distributed among these distances:
857 17 0.00
858 253 0.03
859 353 0.05
860 73 0.01
861 116 0.02
862 17 0.00
863 37 0.01
864 681 0.09
865 38 0.01
866 309 0.04
867 207 0.03
868 164 0.02
869 753 0.10
870 116 0.02
871 460 0.06
872 60 0.01
873 84 0.01
874 247 0.03
875 196 0.03
876 7 0.00
877 75 0.01
878 172 0.02
879 9 0.00
880 1 0.00
881 2 0.00
882 2 0.00
883 193 0.03
884 34 0.00
885 6 0.00
886 5 0.00
888 479 0.06
889 7 0.00
890 342 0.05
891 71 0.01
892 263 0.04
893 95 0.01
894 247 0.03
895 608 0.08
896 288 0.04
897 122 0.02
898 33 0.00
899 33 0.00
900 4 0.00
901 14 0.00
902 70 0.01
903 11 0.00
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (862 bp):
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTT
CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
GACGATGGTGCCTCGGGCAAAAAAAATGGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCG
CAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCC
CCCTCAGCGTGCTGCCGATCCTGCTACGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGA
GAGGCGGGATGCGCAAG
Found at i:1981476 original size:26 final size:26
Alignment explanation
Indices: 1981440--1981492 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1981430 TCGGTCCAAT
1981440 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1981466 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1981492 C
1 C
1981493 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1984107 original size:26 final size:26
Alignment explanation
Indices: 1984078--1984130 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1984068 CCAGTCCGAT
*
1984078 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
1984104 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
1984130 C
1 C
1984131 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1985863 original size:26 final size:26
Alignment explanation
Indices: 1985834--1985886 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1985824 TCGGTCTGAT
*
1985834 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1985860 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1985886 C
1 C
1985887 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1986753 original size:26 final size:26
Alignment explanation
Indices: 1986717--1986769 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
1986707 CCGGTCCGAT
1986717 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
1986743 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
1986769 C
1 C
1986770 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:1990162 original size:12 final size:12
Alignment explanation
Indices: 1990147--1990192 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
1990137 AAATGAAAAA
1990147 ATGAAAAAAATG
1 ATGAAAAAAATG
1990159 ATG-AAAAAA--
1 ATGAAAAAAATG
1990168 ATGAAAAAAATG
1 ATGAAAAAAATG
* *
1990180 ACGACAAAAATG
1 ATGAAAAAAATG
1990192 A
1 A
1990193 AAAAATGAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
9 3 0.10
10 6 0.21
11 6 0.21
12 14 0.48
ACGTcount: A:0.67, C:0.04, G:0.15, T:0.13
Consensus pattern (12 bp):
ATGAAAAAAATG
Found at i:1990166 original size:21 final size:21
Alignment explanation
Indices: 1990142--1990197 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
1990132 AAAAAAAATG
*
1990142 AAAAAATGAAAAAAATGATGA
1 AAAAAATGAAAAAAATGACGA
1990163 AAAAAATGAAAAAAATGACGA
1 AAAAAATGAAAAAAATGACGA
*
1990184 CAAAAATGAAAAAA
1 AAAAAATGAAAAAA
1990198 TGAAAAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.73, C:0.04, G:0.12, T:0.11
Consensus pattern (21 bp):
AAAAAATGAAAAAAATGACGA
Found at i:1990214 original size:8 final size:9
Alignment explanation
Indices: 1990133--1990214 Score: 89
Period size: 8 Copynumber: 8.8 Consensus size: 9
1990123 ACTATGCTTA
1990133 AAAAAAATG
1 AAAAAAATG
1990142 -AAAAAATG
1 AAAAAAATG
1990150 AAAAAAATGATG
1 -AAAAAA--ATG
1990162 AAAAAAATG
1 AAAAAAATG
1990171 AAAAAAATG
1 AAAAAAATG
1990180 ACGACAAAAATG
1 A--A-AAAAATG
1990192 -AAAAAATG
1 AAAAAAATG
1990200 AAAAAAA-G
1 AAAAAAATG
1990208 AAAAAAA
1 AAAAAAA
1990215 AAGTGAATGA
Statistics
Matches: 65, Mismatches: 0, Indels: 17
0.79 0.00 0.21
Matches are distributed among these distances:
8 23 0.35
9 20 0.31
10 5 0.08
11 7 0.11
12 10 0.15
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (9 bp):
AAAAAAATG
Found at i:1991306 original size:41 final size:41
Alignment explanation
Indices: 1991231--1991402 Score: 263
Period size: 41 Copynumber: 4.1 Consensus size: 41
1991221 TGTTTGTCGG
1991231 GGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTACTTTCC-AAAGTCGTGGTGCCTCTGTTTAGA
* *
1991273 AGAGCAATTTAATTTCCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
1991314 GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
1 GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
* * * *
1991355 GGAGCAATTTATGTTTCTTAAAGTCGTTGAGCCTCTGTTTAGA
1 GGAGCAATTTA-CTTTC-CAAAGTCGTGGTGCCTCTGTTTAGA
1991398 GGAGC
1 GGAGC
1991403 TTCGGTCAAA
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
41 74 0.62
42 19 0.16
43 27 0.22
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (41 bp):
GGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGA
Found at i:1991470 original size:12 final size:11
Alignment explanation
Indices: 1991410--1991464 Score: 58
Period size: 12 Copynumber: 4.7 Consensus size: 11
1991400 AGCTTCGGTC
1991410 AAAAACAAAAAT
1 AAAAA-AAAAAT
*
1991422 AAAAAAAAACAC
1 AAAAAAAAA-AT
1991434 AAAAAAAAACAT
1 AAAAAAAAA-AT
1991446 AAAAAACAAAA-
1 AAAAAA-AAAAT
1991457 AAAAAAAA
1 AAAAAAAA
1991465 TGAAAATGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
10 2 0.05
11 10 0.26
12 24 0.62
13 3 0.08
ACGTcount: A:0.87, C:0.09, G:0.00, T:0.04
Consensus pattern (11 bp):
AAAAAAAAAAT
Found at i:1991470 original size:21 final size:21
Alignment explanation
Indices: 1991416--1991470 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
1991406 GGTCAAAAAC
*
1991416 AAAAATAAA-AAAAAACACAA
1 AAAAAAAAATAAAAAACACAA
*
1991436 AAAAAAACATAAAAAACA-AA
1 AAAAAAAAATAAAAAACACAA
*
1991456 AAAAAAAAATGAAAA
1 AAAAAAAAATAAAAA
1991471 TGTTGAGTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 22 0.73
21 8 0.27
ACGTcount: A:0.85, C:0.07, G:0.02, T:0.05
Consensus pattern (21 bp):
AAAAAAAAATAAAAAACACAA
Found at i:1991678 original size:4 final size:4
Alignment explanation
Indices: 1991665--1991803 Score: 63
Period size: 4 Copynumber: 33.8 Consensus size: 4
1991655 TTTTAGGCAT
* * * * * *
1991665 TTTA -TTA TTTA TTTA -TTA TTACTA TGTA TTAA TATA TGTA TATC TTTA
1 TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA
* * *
1991713 TTTA TTTA TTTA TTTT TGTTA -ATA TTTA TATGTA TTTTA TTTA TATA
1 TTTA TTTA TTTA TTTA T-TTA TTTA TTTA T-T-TA -TTTA TTTA TTTA
* *
1991760 GTTA TATA TTTA -TTA TTATA TTATAA TTTA TTTA TTTA -TTA TTT
1 TTTA TTTA TTTA TTTA TT-TA TT-T-A TTTA TTTA TTTA TTTA TTT
1991804 TTTTTATCTT
Statistics
Matches: 102, Mismatches: 20, Indels: 26
0.69 0.14 0.18
Matches are distributed among these distances:
3 14 0.14
4 66 0.65
5 12 0.12
6 9 0.09
7 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:1991790 original size:26 final size:26
Alignment explanation
Indices: 1991739--1991802 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
1991729 TGTTAATATT
*
1991739 TATATGTATT-TTATTTATATAGTTA
1 TATATTTATTATTATTTATATAGTTA
*
1991764 TATATTTATTATTATATTATA-ATTTA
1 TATATTTATTATTAT-TTATATAGTTA
*
1991790 TTTATTTATTATT
1 TATATTTATTATT
1991803 TTTTTTATCT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.26
26 20 0.59
27 5 0.15
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (26 bp):
TATATTTATTATTATTTATATAGTTA
Found at i:1991854 original size:43 final size:43
Alignment explanation
Indices: 1991785--1991868 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 43
1991775 TTATATTATA
*
1991785 ATTTATTTATTTATTATTTTTTTTATCT-TGTAATATTTTTTGG
1 ATTTATTTATTTATTATTTTTATTATCTGT-TAATATTTTTTGG
*
1991828 ATTTATCTTA-TT-TTATTTTTAATTATCTGTTAATTTTTTTT
1 ATTTAT-TTATTTATTATTTTT-ATTATCTGTTAATATTTTTT
1991869 TCTTTTTCAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
42 8 0.22
43 24 0.67
44 4 0.11
ACGTcount: A:0.21, C:0.04, G:0.05, T:0.70
Consensus pattern (43 bp):
ATTTATTTATTTATTATTTTTATTATCTGTTAATATTTTTTGG
Found at i:1992762 original size:14 final size:14
Alignment explanation
Indices: 1992740--1992782 Score: 63
Period size: 13 Copynumber: 3.1 Consensus size: 14
1992730 CCGCTCCAGT
1992740 TTTTTTTTTA-TTA
1 TTTTTTTTTATTTA
1992753 TTTGTTTTTTATTTA
1 TTT-TTTTTTATTTA
1992768 -TTTTTTTTATTTA
1 TTTTTTTTTATTTA
1992781 TT
1 TT
1992783 AGATTAGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 14 0.52
14 10 0.37
15 3 0.11
ACGTcount: A:0.14, C:0.00, G:0.02, T:0.84
Consensus pattern (14 bp):
TTTTTTTTTATTTA
Found at i:1992831 original size:13 final size:13
Alignment explanation
Indices: 1992813--1992866 Score: 65
Period size: 13 Copynumber: 4.1 Consensus size: 13
1992803 CCTTTTTACC
1992813 TTTATTTTACTTT
1 TTTATTTTACTTT
*
1992826 TTTATTTTATTTT
1 TTTATTTTACTTT
*
1992839 TTTGTTTTACTTTT
1 TTTATTTTAC-TTT
1992853 CTTTATTTTA-TTT
1 -TTTATTTTACTTT
1992866 T
1 T
1992867 ATTTTTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
12 1 0.03
13 23 0.66
14 3 0.09
15 8 0.23
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.80
Consensus pattern (13 bp):
TTTATTTTACTTT
Found at i:1992833 original size:5 final size:5
Alignment explanation
Indices: 1992813--1992907 Score: 60
Period size: 5 Copynumber: 19.6 Consensus size: 5
1992803 CCTTTTTACC
* * *
1992813 TTTAT TTTA- CTT-T TTTAT TTTA- TTT-T TTTGT TTTACT TTT-C TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT TTTAT
* *
1992859 TTTAT TTTATT TTTAT TTTCACT TTAAT TTTGT TTTA- -TTAT TTTAT
1 TTTAT TTTA-T TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT
1992905 TTT
1 TTT
1992908 CTTTAAATAA
Statistics
Matches: 70, Mismatches: 9, Indels: 22
0.69 0.09 0.22
Matches are distributed among these distances:
3 3 0.04
4 13 0.19
5 40 0.57
6 11 0.16
7 3 0.04
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:1992962 original size:55 final size:59
Alignment explanation
Indices: 1992912--1993033 Score: 158
Period size: 61 Copynumber: 2.1 Consensus size: 59
1992902 TATTTTCTTT
* **
1992912 AAATAAAA-ATGAAAAAAAAAA-TTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAAATATCAAAAAAAAAAGTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
* * *
1992969 AAATAAAATTTCAAAAAAAAAAGGTTTTTAAGGAAAAGTTGAAAGTATCAATCTTCCTTGA
1 AAATAAAATATCAAAAAAAAAA-G-TTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1993030 AAAT
1 AAAT
1993034 CAAAGTTTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
57 8 0.15
58 11 0.20
61 36 0.65
ACGTcount: A:0.52, C:0.07, G:0.13, T:0.29
Consensus pattern (59 bp):
AAATAAAATATCAAAAAAAAAAGTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:1994915 original size:875 final size:878
Alignment explanation
Indices: 1993158--1998674 Score: 5504
Period size: 875 Copynumber: 6.2 Consensus size: 878
1993148 GGGCGGGTGG
* * * *
1993158 GCGGGCGGGCTGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCTGCGGATCAATAGG
1 GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
*
1993223 GTGGTAGGTGGGTTTTAGGCACATCTTCATATTTCTACCATACCAATGCCATTTTTATGGCTTGT
66 GTGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGT
*
1993288 AAATTCATACAATGGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
130 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
1993353 TTTTCATGATTTTTAAAACTTTTTACGGTTC-AGAATTTTTTTAAAATTTTTTCAGAAGGATTTT
195 TTTTCACGATTTTTAAAACATTTTACGGTTCGAG-ATTTTTTTAAAA-TTTTTCAGAAGGAGTTT
* *
1993417 TGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAA
258 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
* *
1993482 AAACTCGAAGTGTACAGGATTTTGTGACCATTTTAAAAAAATGTCCCCATTTCAGACACTTTAAT
323 AAACTCGAAGTGTACAGGATTTTGTGACCA-TTTGAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
1993547 GGCTATTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
387 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
1993612 GACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAGA
452 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-A
* * *
1993677 CCCCCCGGCCCCTCCAATCGTAGGAACCCCAATGCCGCC-AGTTAGGTTCTCCGACA-ATGCTCC
516 CCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGA-TCAGGTTCTCCGA-AGATGCTCC
* * * ** *
1993740 GATGATGGTGCCCCGGGCGAAACAAAATTATG-G----GTGCACATGCCCTAGCCCAGCATGTGC
579 GACGATGGTGCCCCGGGCGAAA-AAAA-AAAGCGACACCAGCACATGCCCGAGCCCAGCATGTGC
* * * * ** * *
1993800 ACCCACAACCCTCAGTCTC--G-TC-CAAT-CTTAGACTGGGAATAAACTCCGTATGCATAAGTC
642 ACCCGCAACACTCGGTCACGGGATCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
1993860 AACCCACGAAACGAGCGTGCAGGCGCTCAACCGGCCAGAGGGGGAGGATGCGCAACCCGGGGATC
707 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATC
* * * * * * *
1993925 GATCGGGTCCCTCTCAGCGTGCTACCGATCCTACTACCGCAACCCTCGGTCTGGTCTAATCTTAG
772 GGTCGGGTCCCCCTCTGC-TGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAG
*
1993990 ACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA
836 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
1994033 GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGTGCAAGCTGTGAATCGATAGG
1 GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
* * * * * *
1994098 GTGGTAGGTGCGTTTTGGTACATCTTCATATTTTTCCCATGACAATGCCATTTTTATGGCTTGTA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
*
1994163 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
131 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
1994228 TTTCATGATTTTTGAAACATTTTACGGTTCGAGATTGTTTTAAAATTCTTTCAGAAGGAGTTTTG
196 TTTCACGATTTTTAAAACATTTTACGGTTCGAGATTTTTTTAAAATT-TTTCAGAAGGAGTTTTG
* * *
1994293 GCCCCAAACTTGGTAGACATAATCCTTGTATTTTTGTTGGCATGCA-AAAACAAATTCAGCTAAA
260 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA-AAATTCAGCTAAA
*
1994357 AACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAG-GTCCCCATTTCAGACACTTTAATGG
324 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
1994421 CTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGA
389 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
** * *
1994486 TGAGGGATAGGGGGCCAATATCTGGGCCAAGTACCACCACCCATCGCACATCATGTGTGCATACC
454 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-ACC
* * * *
1994551 CCTCGGCCCCCCCAATC-ACTGGAACCCCAATGCCTCCGATTAGGTTCTCCGAAGATGCTCCGAC
518 CCCCGGCCCCCCCAATCGTC-GGAACCCCAATGCCGCCGATCAGGTTCTCCGAAGATGCTCCGAC
* * *
1994615 GATGGTGCCCCGGGTGAAAAAAAAAAGCGACACCAGCACATGCCCAAGCCCAACATGTGCACCCG
582 GATGGTGCCCCGGGCGAAAAAAAAAAGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCG
* *
1994680 CAACACTCGGTC-C-GG-TCTG-AT-CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCC
647 CAACACTCGGTCACGGGATCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
1994740 ACGAAACAAGCGTGCGGGCACTTAGCCAGCCATAAGGGCAGGATGCGCAAGCCGGGGATCGGCCG
712 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCGGTCG
* * * * *
1994805 GGTCCCACTTTGCATGCTGTCGATCCTGCTACCACAACCCTTGGTCTGGTTTGATCTTAGACTGG
777 GGTCCCCCTCTGC-TGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGG
*
1994870 GAATGAACTCCGTATGCCTAAGCCATCCGACGAAACGA
841 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
1994908 GCGGGCGGGCATGC-GGCAACTACGTCGGTCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAG
1 GCGGGCGGGCAGGCGGGC-ACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAG
* ***
1994972 GGTGGTAGGTGGGTTTGGGCACATCTTCATATTT-TTGTAGTGCCAATGCCATTTTTATGGCTTG
65 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCA-TGCCAATGCCATTTTTATGGCTTG
*
1995036 TAAATTCATACAATGGTCCCTTAAGCGTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
129 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *** *
1995101 TTTTTCACGATTTTTAAAACTTTTTTTATTTTTC-ATGA--TTTTTAAAACTTTTTTC---ATGA
194 TTTTTCACGATTTTTAAAAC--ATTTTACGGTTCGA-GATTTTTTTAAAA--TTTTTCAGAAGGA
** ** * ** **** * * * ** **
1995160 -TTTT----TAAAACTT--TTTACG-G-TTCAAG-ATTGTTTTAAAAACTTTTTCAGAAGGAGTT
254 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT-TTTT-TTGGC--ATGCACAAAAAAAT
** *** * * * * *
1995215 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
315 TCAGCTAAAAAC-TCG-A-A-GTG-TAC-AGGA----TTTT-G--TG-AC-----CATT----T-
* *** ** * ** **
1995280 AAAACTCAAAGTGTACAGAATTTTGTGAC-CATTTGAAAAAGGTGTCCCCATTTCAGACACTTTA
356 -GAA---AAAGTGT-CCCCA-TTTCAGACAC-TTT----AA--TGGCTAC-TGGCAG-CA----A
* * * * * **
1995344 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGT
402 A---C--CT-GTA--AAA--TCTCAAAT-GC---T-CT-TTAAGGGGG-TGTGAGTTCTCGAGGT
* *
1995409 TTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCACCACCCATCGCACATCATGTGCGCA
450 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
** * * *
1995474 CACCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAAAGATGCTCC
515 -ACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAAGATGCTCC
** * *
1995539 TG-CGATGGTGCCTAGGGC-AAAAAAAAAAGTGCCACCAGCACATGCCCGAGCCCAGCATGTGCA
579 -GACGATGGTGCCCCGGGCGAAAAAAAAAAGCGACACCAGCACATGCCCGAGCCCAGCATGTGCA
* * * * * * *
1995602 CCTGCCACACTTGGT--CTGG-TCCG-AT-CTTAGATTGGGAATGAACTCCGTGTGCCTAAGTCA
643 CCCGCAACACTCGGTCACGGGATCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
1995662 ACCCACGAAACGAGCGTGAGGGCACTTC-GTCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATC
708 ACCCACGAAACGAGCGTGCGGGCGC-TCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATC
* * * * * * * * *
1995726 GATCGGGTCCCCCTCAATG-TGCTGTCAATCCTGCTATCGCAACCCTTGATTTGGTCCGATCTTA
772 GGTCGGGTCCCCCTC--TGCTGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTA
* * * *
1995790 GACTGGGAATGAACTCCATATGCCTAACCCAACCGATGAAATGA
835 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* ** * * * *
1995834 GCGGGCGGGCATGCGGTAACTACGCCGGCCAAAGAGGCGGGATGCACAAGCCGTGGATCGATGGG
1 GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
* * *
1995899 GTGGTTGGTGGGTTTAGGTACATCTTCATATTTCTA-TAGTGCCAATGCCATTTTTATGGCTTGT
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCA-TGCCAATGCCATTTTTATGGCTTGT
*
1995963 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCGAGACGACTCGTTTTCTAT
130 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
1996028 TTTTCACGATTTTTAAAACTTTTTATGGTTCGAGATTTTTTTTAAACTTTTTCAAAAGGAGTTTT
195 TTTTCACGATTTTTAAAACATTTTACGGTTCGAGA-TTTTTTTAAAATTTTTCAGAAGGAGTTTT
* *
1996093 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCACGCACAAAAATATTCAGCTAAA
259 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
*
1996158 AACTCGAAGTGTACAGGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
324 AACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATG
*
1996223 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
388 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
1996288 ATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGTGC-A--
453 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACC
* * *
1996350 ---C--ACCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGG---T-------T-CTCCGACG
518 CCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAAGATGCTCCGACG
* * * * * * * * *
1996399 ATGGTGCCCCGTGC-AAAAAAAAATGTGGCACCAGCACATGCTCGAGCCAAGCATTTGCACTCGT
583 ATGGTGCCCCGGGCGAAAAAAAAAAGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGC
*
1996463 AACCCTCGATCCAATTTGATCTGAGACTGGGAATGAGCTCCGTATGCTTAGACTGGGAATGAACT
648 AACACTCG---------G-TC----AC-GGG-AT---CT--GTATGCTTAGACTGGGAATGAACT
* * * *
1996528 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAGCTGGCCAG-TGGTGCAGGAT
692 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGG-GCAGGAT
* * * * *
1996592 GCGCAAGCCAGGGATCGGTCGGGTCCCCCTCAGTGC-GCTTTTGATTCTGCTA-CAGTAACCCTC
756 GCGCAAGCCGGGGATCGGTCGGGTCCCCCTC--TGCTGCTATCGATCCTGCTACCA-CAACCCTC
* * *
1996655 AGTCTGGTCGGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA
818 GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * * *
1996716 GCTGACGGGCAGGCGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGG
1 GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
* *
1996781 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGTCAATGCCATTTTTATGGCTTGTA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
* * *
1996846 AAATCATGCAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
131 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-T
* *
1996911 TTTTCACGA-TTTTAGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTAGAAGGAGTTTT
195 TTTTCACGATTTTTA-AAACATTTTACGGTTCGAGATTTTTTTAAAATTTTTCAGAAGGAGTTTT
* * * *
1996975 GGCCCCAAACCTCGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAA
259 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
*
1997040 AACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTAT-AGACACTATAAT
324 AACTCGAAGTGTACAGGATTTTGTGACCATTTG-AAAAAGTGTCCCCATT-TCAGACACTTTAAT
* *
1997104 GGCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTGAGGGGGTGTGAGTTCTCGAGGTTT
387 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
1997169 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCTGCACCCAACACACATCACGTGCGCACA
452 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-A
* * * *
1997234 CCCCCCCCGCTTCCCCCAATCGTCGGAACCCCAATGCCACCGATCAGGTTCACC---G--G----
516 -CCCCCCGGC-CCCCCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAAGATGCTCC
* * * *
1997290 G--GATGGTGCCCCAGGCG-AAAAAAATA-CGACACCAGCAAATGCTCGAGCCCAGCATGTGCAC
579 GACGATGGTGCCCCGGGCGAAAAAAAAAAGCGACACCAGCACATGCCCGAGCCCAGCATGTGCAC
* * *
1997351 CCGTAACCCTAGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACAGGGAATG
644 CCG-----C-A-A--CACTC-GGTC----AC--GG---G-A-TCTGTATGCTTAGACTGGGAATG
* * * *
1997416 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCCGACGCTCAGCCGGCCA-AAGGGGTA
688 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAA-GGGCA
* * * ** * * * * * *
1997480 GGATGCACAAGCCGGGTATCGGTCAGGTCCCCCTCAACGTGCTATCGATCTTGTTGCTATAAACC
752 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC-TGCTATCGATCCTGCTACCACAACCC
* * *
1997545 TCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCGATGAAACGA
816 TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
*
1997608 ----GCGGGCAGACGGG--CTA--T-------AGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
1 GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
***
1997658 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATTGTGCCAA-GCCATTTTTATGGCTTGTA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
* *
1997722 AATTCTTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
131 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
1997787 TTTCACGATTTTCAAAACATTTTACGGTTCAAGATTTTTTTAAAATTTTTTTAGAAGGAGTTTTG
196 TTTCACGATTTTTAAAACATTTTACGGTTCGAGATTTTTTTAAAA-TTTTTCAGAAGGAGTTTTG
** * * *
1997852 GCCCCAAACTTCTTAGATGTGATCGTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAA
260 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
1997917 ACTTGAAGTGTATAGGATTTTGT-AGCCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGG
325 ACTCGAAGTGTACAGGATTTTGTGA-CCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
1997981 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTGGA
389 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
1998046 TGAGGGATAGGGGGCTAATTTAAGGGCCAAGTACCAGCACCCATCACACATCATGTG-GGAA---
454 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACCC
* * * * ** ***
1998107 --C-ACCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGTAA
519 CCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAAGATGCTCCGACGA
* * * * * *
1998169 TGGTGCCTCGAGCGAAAAAAAATA-CGGCACCAGCACATGCCCGTGCCTAGCATGTGCACCCGCA
584 TGGTGCCCCGGGCGAAAAAAAAAAGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCA
*
1998233 ACCCTCGATTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
649 ACACTC------G---G-TC----AC-GGG-AT---CT--GTATGCTTAGACTGGGAATGAACTC
* * * *
1998298 CGTATGCCTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAAGGGCAGGATGC
693 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCAGGATGC
* * ** * * * * ** *
1998363 GCAAGCCAGGGATTGGTTAGGTCCCCCTTTACATGCTACCG-TCCTGCTGCCGTAACCCTCAGTC
758 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC-TGCTATCGATCCTGCTACCACAACCCTCGGTC
* * * *
1998427 CGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGA
822 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
1998484 GTGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCATGGATCGATAGG
1 GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
*
1998549 GTGGTAGGTGGGTTTAGGCACATATTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
* * * *
1998614 AATTAATACAATGGTCCCTTAAGCTTTCATGTGAAGTTTCATGGCAAGACGGCTCATTTTC
131 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
1998675 AAAAGGAGTT
Statistics
Matches: 3894, Mismatches: 514, Indels: 451
0.80 0.11 0.09
Matches are distributed among these distances:
855 1 0.00
856 64 0.02
857 1 0.00
863 3 0.00
864 7 0.00
865 39 0.01
866 5 0.00
867 46 0.01
868 13 0.00
869 2 0.00
870 5 0.00
871 10 0.00
872 224 0.06
873 27 0.01
874 258 0.07
875 674 0.17
876 349 0.09
877 256 0.07
878 6 0.00
879 1 0.00
880 15 0.00
881 9 0.00
882 614 0.16
883 37 0.01
884 1 0.00
885 3 0.00
886 6 0.00
887 2 0.00
888 13 0.00
890 4 0.00
891 72 0.02
892 291 0.07
893 60 0.02
894 2 0.00
895 5 0.00
896 5 0.00
897 6 0.00
898 14 0.00
899 5 0.00
901 5 0.00
902 3 0.00
904 4 0.00
905 13 0.00
906 5 0.00
907 7 0.00
910 4 0.00
913 1 0.00
915 5 0.00
916 2 0.00
918 3 0.00
920 8 0.00
921 3 0.00
923 1 0.00
924 17 0.00
925 10 0.00
926 436 0.11
927 155 0.04
928 9 0.00
929 6 0.00
930 3 0.00
931 1 0.00
932 1 0.00
933 8 0.00
934 13 0.00
935 4 0.00
936 2 0.00
937 7 0.00
938 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (878 bp):
GCGGGCGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTTAAAACATTTTACGGTTCGAGATTTTTTTAAAATTTTTCAGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAACCCCC
CGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGAAGATGCTCCGACGATG
GTGCCCCGGGCGAAAAAAAAAAGCGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAAC
ACTCGGTCACGGGATCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCGGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTC
CCCCTCTGCTGCTATCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCGACGAAACGA
Found at i:1995131 original size:28 final size:28
Alignment explanation
Indices: 1995094--1995154 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
1995084 AGACGACTCG
*
1995094 TTTTCTATTTTTCACGATTTTTAAAACT
1 TTTTTTATTTTTCACGATTTTTAAAACT
*
1995122 TTTTTTATTTTTCATGATTTTTAAAACT
1 TTTTTTATTTTTCACGATTTTTAAAACT
1995150 TTTTT
1 TTTTT
1995155 CATGATTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.64
Consensus pattern (28 bp):
TTTTTTATTTTTCACGATTTTTAAAACT
Found at i:1995155 original size:21 final size:21
Alignment explanation
Indices: 1995129--1995174 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
1995119 ACTTTTTTTA
1995129 TTTTTCATGATTTTTAAAACT
1 TTTTTCATGATTTTTAAAACT
1995150 TTTTTCATGATTTTTAAAACT
1 TTTTTCATGATTTTTAAAACT
1995171 TTTT
1 TTTT
1995175 ACGGTTCAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.26, C:0.09, G:0.04, T:0.61
Consensus pattern (21 bp):
TTTTTCATGATTTTTAAAACT
Found at i:1995193 original size:49 final size:49
Alignment explanation
Indices: 1995101--1995203 Score: 120
Period size: 49 Copynumber: 2.1 Consensus size: 49
1995091 TCGTTTTCTA
*** *
1995101 TTTTTCACGATTTTTAAAACTTTTTTTATTTTTCATGATTTTT-AAAACT
1 TTTTTCACGATTTTTAAAAC-TTTTTTACGGTTCAAGATTTTTAAAAACT
*
1995150 TTTTTCATGATTTTTAAAAC-TTTTTACGGTTCAAGATTGTTTTAAAAACT
1 TTTTTCACGATTTTTAAAACTTTTTTACGGTTCAAGA-T-TTTTAAAAACT
1995200 TTTT
1 TTTT
1995204 CAGAAGGAGT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
47 12 0.26
48 1 0.02
49 23 0.50
50 10 0.22
ACGTcount: A:0.27, C:0.10, G:0.07, T:0.56
Consensus pattern (49 bp):
TTTTTCACGATTTTTAAAACTTTTTTACGGTTCAAGATTTTTAAAAACT
Found at i:1996522 original size:26 final size:26
Alignment explanation
Indices: 1996486--1996535 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
1996476 ATTTGATCTG
*
1996486 AGACTGGGAATGAGCTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
1996512 AGACTGGGAATGAACTCTGTATGC
1 AGACTGGGAATGAACTCCGTATGC
1996536 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:1997404 original size:26 final size:26
Alignment explanation
Indices: 1997375--1997427 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1997365 CCAGTCTGAT
* *
1997375 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
1997401 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
1997427 C
1 C
1997428 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:1998281 original size:26 final size:26
Alignment explanation
Indices: 1998252--1998304 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
1998242 TTGGTCCGAT
1998252 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1998278 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
1998304 C
1 C
1998305 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:1999999 original size:474 final size:479
Alignment explanation
Indices: 1999104--2000051 Score: 1313
Period size: 474 Copynumber: 2.0 Consensus size: 479
1999094 TAGACTGGGA
* * *
1999104 ATGAACTCTGTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCAGGCCAGAGGTG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCAGGCCAGAGGGG
** * * * *
1999169 CAAGATGCACAAGCCGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTAGTCCTGTTATCGCAACC
66 CAAGATGCACAAGCCGGGATCGACCGGGTCCCCCTCTACATCCTGCGAGTCCTATTATCGCAACC
** *
1999234 CTCAGTCCGGTCCAGTCTTAGACTAGGAATGAACTTCTTATGCCTAAGCCAACCGATGAAACGAG
131 CTCAGTCCGGTCCAGTCTTAGACTAGGAATGAACGCCGTATGCCTAAGCCAACCGATGAAAC-AG
* * * * * *
1999299 CGTGTGGACGGGCGGGCACTACGCCGGCTAGAGAGGCAGGATGCGTAAGCTATGGATCGATTGGG
195 C--GTAGACGGGCGGGCACTAAGCCGGCCAGAGAGGCAGGATGCGTAAGCCATGGATCAATAGGG
*
1999364 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
258 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAA
* * * *
1999429 ATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
323 ATTCAAACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* ** * * **
1999494 TTAATGATTTTTTAAACTTTTTAAGGTTTGGGGTTTTTT-TAAATTTTTTCAAAAGGAGTTTTGG
388 TTAACGATTTTAGAAACTTTTTAAGGTTTGGGATTTTTTAAAAAAATTTTCAAAAGGAGTTTTGG
* *
1999558 CCCTAAACTTGGTAGACGTTTGTTGGC
453 CCCCAAAATTGGTAGACGTTTGTTGGC
*
1999585 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGG
1 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCAGGCCAGAGGGG
* * * *
1999650 CAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC-AGCATCCTGTCGA-TCCTATTGTTGCA
66 CAAGATGCACAAGCC-GGGATCGACCGGGTCCCCCTCTA-CATCCTG-CGAGTCCTATTATCGCA
* ** *
1999713 ACCCTCCGTTTGGTCCCA-TCTTAGACTGGGAATGAACGCCGTATGCCTAAGCCAACCGATG-AA
128 ACCCTCAGTCCGGT-CCAGTCTTAGACTAGGAATGAACGCCGTATGCCTAAGCCAACCGATGAAA
* * * *
1999776 -A-C-TAG-CGGGCGGGCACTAAGGCGGCCAGAGTGGCGGGATGCGTAAGCCGTGGATCAATAGG
192 CAGCGTAGACGGGCGGGCACTAAGCCGGCCAGAGAGGCAGGATGCGTAAGCCATGGATCAATAGG
1999837 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
257 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
*
1999902 AATTCAAACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATT
322 AATTCAAACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
1999967 TTTCACGATTTTAGAAACTTTTTACA-GTTTGGGATTTTTTAAAAAAATTTTCAGATGGAGTTTT
387 TTTAACGATTTTAGAAACTTTTTA-AGGTTTGGGATTTTTTAAAAAAATTTTCAAAAGGAGTTTT
2000031 GGCCCCAAAATTGGTAGACGT
451 GGCCCCAAAATTGGTAGACGT
2000052 GATTCTTGTA
Statistics
Matches: 412, Mismatches: 49, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
474 204 0.50
475 40 0.10
478 1 0.00
479 1 0.00
481 77 0.19
482 84 0.20
483 5 0.01
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.29
Consensus pattern (479 bp):
ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCAGGCCAGAGGGG
CAAGATGCACAAGCCGGGATCGACCGGGTCCCCCTCTACATCCTGCGAGTCCTATTATCGCAACC
CTCAGTCCGGTCCAGTCTTAGACTAGGAATGAACGCCGTATGCCTAAGCCAACCGATGAAACAGC
GTAGACGGGCGGGCACTAAGCCGGCCAGAGAGGCAGGATGCGTAAGCCATGGATCAATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATT
CAAACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTA
ACGATTTTAGAAACTTTTTAAGGTTTGGGATTTTTTAAAAAAATTTTCAAAAGGAGTTTTGGCCC
CAAAATTGGTAGACGTTTGTTGGC
Found at i:2000469 original size:26 final size:26
Alignment explanation
Indices: 2000440--2000492 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2000430 TCGGTCCGAT
2000440 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
* *
2000466 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
2000492 C
1 C
2000493 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:2001374 original size:26 final size:26
Alignment explanation
Indices: 2001338--2001390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2001328 CCAGTCCGAT
* *
2001338 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2001364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2001390 C
1 C
2001391 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2001863 original size:898 final size:894
Alignment explanation
Indices: 1999585--2002058 Score: 3518
Period size: 897 Copynumber: 2.8 Consensus size: 894
1999575 GTTTGTTGGC
* *
1999585 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * ***
1999650 CAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCAGCATCCTGTCGATCCTATTGTTGCAAC
66 CAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATACTGTCGATCCTACTACCGCAAC
* *
1999715 CCTCCGTTTGGTCCCATCTTAGACTGGGAATGAACGCCGTATGCCTAAGCCAACCGATGAAAC--
131 CCTCAGTCTGGT-CCATCTTAGACTGGGAATGAACGCCGTATGCCTAAGCCAACCGATGAAACGA
* * * *
1999778 -TAGCGGGCGGGCACTAAGGCGGCCAGAGTGGCGGGATGCGTAAGCCGTGGATCAATAGGGTGGT
195 GTGGCGGGCGGGCACTAAGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGT
1999842 AGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTC
260 AGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
1999907 AAACAATGCTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCA
325 -AACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * ** * *
1999972 CGATTTTAGAAACTTTTTACAGTTTGGGATTTTTTAAAAAAATTTTCAGATGGAGTTTTGGCCCC
389 CGATTTTAGAAACTTTTTACGGTTCGAGATTTTTT-TAAATTTTTTCAGAAGGATTTTTGGCCCC
* * * * *
2000037 AAAATTGGTAGACGTGATTCTTGTATTTTTTTTGGCATGTACAAAAAAATTCAGCTAAAAAGTCA
453 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * * * * *
2000102 AACTGTATAGGATTTTGTGGCCATTTG-AAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACT
518 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACT
* *
2000166 AGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
583 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
*
2000231 GATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGCACACCCCCCC
648 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGCACACCCCCCC
** * * * * *
2000296 GGCCCCCCCAATCGTCGGATCACCACTGCCGTCGGTCAGGTTCCCGGTGATGCTCCGATGATGGT
713 GGCCCCCCCAATCGTCCAAACACCAATGCCGTCGGTCAGGTGCCCGGCGATGCTCCGACGATGGT
2000361 GTCCCGAGCAAAAAAAAATGCGACACCAGCACATGCTTGAGCCTAGCAAGTGCACCCGCAACCCT
778 GTCCCGAGCAAAAAAAAATGCGACACCAGCACATGCTTGAGCCTAGCAAGTGCACCCGCAACCCT
* ** * *
2000426 TGGTTCGGTCCGATCTTAGACTGGGAACGAACTCCGTATGCTTATACTGGGA
843 CGGACCAGTCCGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGA
* * * *
2000478 ATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCGGCCGGTCAGAGGGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * *
2000543 CAGGATCCGCAAGCCAGGGATCGGCCGAGTCCCCCTCAGCATGCTGCCGATCCTAC-AGCCGTAA
66 CAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATACTGTCGATCCTACTA-CCGCAA
* * * *
2000607 CCCTCAGTCTGATCCATTCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
130 CCCTCAGTCTGGTCCA-TCTTAGACTGGGAATGAACGCCGTATGCCTAAGCCAACCGATGAAACG
* * *
2000672 AGCGGACGGGCGGGCACTATGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATTGGGTG
194 AGTGG-CGGGCGGGCACTAAGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTG
* * *
2000737 GTATGTGGTTTTAGGCACATCTTCATATTTCTACCGTGCCAATGCCATTTTTATGGCTTGTAAAT
258 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
2000802 TCAACAATTGTCCCTTAAGCCTTCATGTGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTT
323 TCAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
*
2000867 ACGATTTTTA-AAACTTTTTACGGTTCGAGATTTTTTTAAAATTCTTTCAGAAGG-TGTTTTGGC
388 ACGA-TTTTAGAAACTTTTTACGGTTCGAGATTTTTTT-AAATTTTTTCAGAAGGAT-TTTTGGC
*
2000930 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAAC
450 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
2000995 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCT
515 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCT
* * *
2001060 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATA
580 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* * * *
2001125 ACGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACACACC
645 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGCACAC-CC
* * * * *
2001190 CCCCGGTCCCCCTAATCGTCCAAACCCCAATGCCGTCGGTCAGGTGCTCTGGCGTTGCTCCGACG
709 CCCCGGCCCCCCCAATCGTCCAAACACCAATGCCGTCGGTCAGGTGC-CCGGCGATGCTCCGACG
* * ** * * * *
2001255 ATGGTG-GCCGGGTGAAAAAAAATGTGGCACCAGCACATG-TTCTAGCCTAGCATGTGCACCCGC
773 ATGGTGTCCCGAGCAAAAAAAAATGCGACACCAGCACATGCTT-GAGCCTAGCAAGTGCACCCGC
* * *
2001318 AACCCTCGGACCAGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGA
837 AACCCTCGGACCAGTCCGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGA
* * *
2001376 ATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAAGGG
1 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * *
2001441 CAGGATGCTCAAGCCGGGGATCGGTCGGGTCCCCTTCAGCGTACTGTCGATCCTACTACCACAAC
66 CAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATACTGTCGATCCTACTACCGCAAC
* * * * *
2001506 CCTCGGTCTGGTCTGATCTTAGA-TTGGAATGAAC-CCTGTACGGCTAAGCCAACCGATGAAACG
131 CCTCAGTCTGGTC-CATCTTAGACTGGGAATGAACGCC-GTATGCCTAAGCCAACCGATGAAACG
* * * * * *
2001569 AGTGGCGGGCAGGTAGGCACTACGTCGGCCAGACAGGCGAGATGTGCAAGCCGTGGATCGATAGG
194 AGTGGCGGGC--G--GGCACTAAGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGG
2001634 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
255 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
*
2001699 AATTCATACAGTGGTCCCTTAAG-CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
320 AATTCA-ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* *
2001763 TTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGATTTTTGG
384 TTTCACGATTTTAGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGATTTTTGG
** * * *
2001828 TGCCAAACTTGGTAGACGTAATCCTTGTA-TTTTTTTGGGATTGCACAAAAACATTCAGCTAAAA
449 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA-TGCACAAAAAAATTCAGCTAAAA
2001892 ACTCGAAGTGTAC-AGCATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACG
513 ACTCGAAGTGTACAAG-ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACG
*
2001956 GCTACTGGCAGCAAACCTGTAAAATCTCGAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
577 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
*
2002021 ATGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAG
642 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
2002059 GGCCCCCCCA
Statistics
Matches: 1402, Mismatches: 154, Indels: 44
0.88 0.10 0.03
Matches are distributed among these distances:
892 3 0.00
893 165 0.12
896 197 0.14
897 310 0.22
898 278 0.20
899 250 0.18
900 185 0.13
901 14 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
CAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCAGCATACTGTCGATCCTACTACCGCAAC
CCTCAGTCTGGTCCATCTTAGACTGGGAATGAACGCCGTATGCCTAAGCCAACCGATGAAACGAG
TGGCGGGCGGGCACTAAGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
ATTTTAGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGATTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACACATCATGTGCGCACACCCCCCCGGC
CCCCCCAATCGTCCAAACACCAATGCCGTCGGTCAGGTGCCCGGCGATGCTCCGACGATGGTGTC
CCGAGCAAAAAAAAATGCGACACCAGCACATGCTTGAGCCTAGCAAGTGCACCCGCAACCCTCGG
ACCAGTCCGATCTTAGACTGGGAACGAACTCCGTATGCTTAGACTGGGA
Found at i:2003853 original size:875 final size:870
Alignment explanation
Indices: 2002126--2005058 Score: 3843
Period size: 845 Copynumber: 3.4 Consensus size: 870
2002116 AGACAAGCCT
* * * * *
2002126 GAGCCCAGCATGTGCACCCGCAATCC-TTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGT
1 GAGCCCAGCATGTGCACCTGCAA-CCGTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGT
* * *
2002190 ATGCCTAAGTCAACCCACGAAACAAGCGTACGGGTGCTCAACCGGCTAGAGGGGCGGGATGCGCA
65 ATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCA
* * * * * *
2002255 AGTTC-AGGATCGATCGGGTCCCCCTCAGCGTGCTGCCAATCCAACTGCCACAA-CCTCAGTCCG
130 AG-CCGAGGATCGGTCGGGTCCCCCTCAACGTGCTGCCAATCCTACTACCGCAACCCTCAGTCCG
* * * *
2002318 GTCTGATCTTAGATTGGGAATTAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
194 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC
* * ** *
2002383 GGGCGGGCACTACGCCGACCAGAGTGGCGGGATGCGCAAGTTGTGGATCGATAGGGTGGTTGGTG
259 GGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
2002448 CGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
324 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
2002513 ATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
389 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
**
2002578 TTTGAAACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
454 TTCAAAACTTTTTAA-GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* *
2002643 GGTAGACATGATCCTTGTATTTTTGTGGGCATGCACAAAAATATTCAACTAAAAACTCGAAGTGT
518 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGT
* * * * *
2002708 ATAGGATTTTGTGACCATTTGAAAAAAGTGT-CCTCATTCCAGACACTTTTATTGCTACTGGCAA
583 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCT-ATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
2002772 CAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTTATAAGGGATAG
647 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTCATGAGGGATAG
*
2002837 GGTGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCACCGG-C
712 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACA--CCCACCGGCC
* *
2002901 CCCCCAATCGTCGGAACCCCAATGCCGTCGGTTA-GTTCTCCGATGATGCTCTGACGATGGTGCC
775 CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCAG-C-ATGGTGCC
2002965 CCGGGCGAAAAAAAATAGGGCACCAGCACATGCCC
838 CCGGGC-AAAAAAAATA-GGCACCAGCACATGCCC
2003000 GAGCCCAGCATGTGCACCTGCAACCGTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTA
1 GAGCCCAGCATGTGCACCTGCAACCGTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTA
* * *
2003065 TGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAA
66 TGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAA
* * *
2003130 GCCGAGGATCGGTCGGGTCCCACTCAACGTGCTGCCGATCCTACTACCGCAACCCTCAATCCGGT
131 GCCGAGGATCGGTCGGGTCCCCCTCAACGTGCTGCCAATCCTACTACCGCAACCCTCAGTCCGGT
* *
2003195 CCGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGG
196 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGG
** * *
2003260 GCGGGCACTACATCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTATGTGGG
261 GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
2003325 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
326 TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * *
2003390 GGTCCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGATGACTCGTTTTCTGTGTTTCACGATTTT
391 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * * *
2003455 CAAAACTTTTTACAATTTGGGATTTTTTCAAAAATATTTTCAGAAGGAGTTTTGGCTCGAAACTT
456 CAAAACTTTTTA-AGTTCGGGATTTTTT--AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
** * *
2003520 TTTAGACATGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
518 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGT
* *
2003585 ACATGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCCACTGGCAGC
583 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGC
2003650 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTAGAGGTTTCATGAGGGATAGG
648 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTCATGAGGGATAGG
*
2003714 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCACCGGCCCCC
713 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCACCGGCCCCC
* **
2003779 CCAATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCAGCATTGGTGCCATG
778 CCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCT-CAGCA-TGGTGCCCCG
* *
2003844 GGCAAAAAAAA-ATG---C-G-GCA---CC
841 GGCAAAAAAAATAGGCACCAGCACATGCCC
* * * *
2003865 -AG--TA-C-T-TG--CCTG--A--G-C---CCAG--C-AT-GTAGACTGGGAATGAACTCCGTA
1 GAGCCCAGCATGTGCACCTGCAACCGTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTA
* * * * ** * *
2003910 TGCCTAAGTTAACCCACGAAACGAGTGTACGGGCGCTTAGTCGGCCAAAGGGGTAGGATGCGCAA
66 TGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAA
* * * *
2003975 GCCGGGGATCTGTCGGGTCCCCCTCAACGTGCTGCCAATCTTGCT-CCTGCAACCCTCAGTCCGG
131 GCCGAGGATCGGTCGGGTCCCCCTCAACGTGCTGCCAATCCTACTACC-GCAACCCTCAGTCCGG
* * ** *
2004039 TCTGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGATGAATTGAGCGGGCGGGCG
195 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCG
*
2004104 GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
260 GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
2004169 TTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTACATTCATACAA
325 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
2004234 CGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCATGATTT
390 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* *
2004299 TCAAAACGTTTTATGGTTCGGGATTTTTTTAAAATTTTTTCAGAAAGGAGTTTTGGCCCCAAACT
455 TCAAAACTTTTTA-AGTTCGGGA-TTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACT
** * * *
2004364 TGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAACCAAAAACTCTAAGTG
517 TGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTG
* * *
2004429 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGACAG
582 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAG
*
2004494 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATA
647 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTCATGAGGGATA
* * *
2004558 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACACCC-CCCGCCC
711 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCACCGGCCC
* *
2004622 ACCCCAATCGTCGAAACCCCAATCCCGTCGGTCAGGTTCTCC---G--G--CA--ATGGTGCCCC
776 -CCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCAGCATGGTGCCCC
** *
2004678 GAGTAAAAAAAAATATGGCACCAGCACTTGCCC
840 G-GGCAAAAAAAATA-GGCACCAGCACATGCCC
* * *
2004711 GAGTCCAGCATGTGCACCTGCAAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGT
1 GAGCCCAGCATGTGCACCTGC-AACCGTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGT
** ** * * ** *
2004776 ATGCCTAAGTCAATGCATAAAATAAGCGTGCGGGCGCTCAGTCGGCCAGAGTGGCAGGATG-GCC
65 ATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGCG-C
* * ** * * ** * * * * * *
2004840 AAG-CTAGGGATCGGCCAAGTCCCCGTTAGTGTGCTACCGATCCTGCTACCGTAATCCTCAGTCT
129 AAGCCGA-GGATCGGTCGGGTCCCCCTCAACGTGCTGCCAATCCTACTACCGCAACCCTCAGTCC
* * * * *
2004904 GGTTTGATCTTAGACTAGGAATGAACTCCGTATGCCTGACCCAACTGACG-AA--A-CGAGCGGG
193 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGG
* * * *
2004965 CGGGCGGGCAATACGTCTGCCGGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
258 CGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
2005030 GGGTTTAGGCACATCTT-ATATTTCTGCCA
323 GGGTTTAGGCACATCTTCATATTTCTGCCA
2005059 AACTTGGTAG
Statistics
Matches: 1805, Mismatches: 202, Indels: 116
0.85 0.10 0.05
Matches are distributed among these distances:
835 8 0.00
836 10 0.01
837 1 0.00
838 3 0.00
841 2 0.00
842 1 0.00
843 2 0.00
844 14 0.01
845 560 0.31
846 132 0.07
847 4 0.00
849 4 0.00
850 1 0.00
851 1 0.00
852 3 0.00
853 1 0.00
854 4 0.00
855 1 0.00
857 5 0.00
859 2 0.00
860 2 0.00
861 1 0.00
862 13 0.01
863 86 0.05
864 3 0.00
865 2 0.00
866 5 0.00
867 155 0.09
868 4 0.00
869 1 0.00
870 1 0.00
873 4 0.00
874 167 0.09
875 313 0.17
876 111 0.06
877 175 0.10
878 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (870 bp):
GAGCCCAGCATGTGCACCTGCAACCGTCGATCCGGTCCGATCTTAGACTAGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAA
GCCGAGGATCGGTCGGGTCCCCCTCAACGTGCTGCCAATCCTACTACCGCAACCCTCAGTCCGGT
CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGG
GCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
CAAAACTTTTTAAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACA
GGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTCATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCACCGGCCCCCCCA
ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCAGCATGGTGCCCCGGGCAA
AAAAAATAGGCACCAGCACATGCCC
Found at i:2006390 original size:26 final size:26
Alignment explanation
Indices: 2006352--2006404 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2006342 CTGGTTTGAT
*
2006352 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
2006378 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
2006404 C
1 C
2006405 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:2006792 original size:892 final size:888
Alignment explanation
Indices: 2005056--2011853 Score: 7850
Period size: 892 Copynumber: 7.7 Consensus size: 888
2005046 TATATTTCTG
* * *
2005056 CCAAACTTGGTAGATGCGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
2005121 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * *
2005186 CTGGCAGCAAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGCGAGTTTTCAAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
2005251 GGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCAC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-C
* * * * * * *
2005315 CCCGGCCCCCCAAAACGTCGGAACCCCAATGTTGCCTGTCAGGCTCTCCGACAATCCTGTGGCGA
259 CCCGGCCCCCC-AATCGCCGGAACCCCAATGTCGTCGGTCAGG-T-T----C-TTCC---GACGA
* * * * * * * * *
2005380 TGGAGCCACGGGCG-AAAAAAATGA-GGCACCAGCACAAGCTCGAGCCCAGCATTTACGCTCGCA
313 TGGTGCCCCAGGCGAAAAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCA
* * * * *
2005443 ACCCTCGATCCGATCC-ATTCTTAGACTGGGAATGCACTTCGTATGCTTAGGCTGGGAATGAACT
377 ACCCTCGGTCCGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
2005507 CTGTATTCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAAGATG
441 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATG
* * * * * * * * **
2005572 CGCAAG-C-TGAATCA-GCCGAGTCCCCCACTGTGTGCTGTCGATCCTGCTGCCGCAACGCTTGG
506 CGCAAGCCGGGGAT-AGGCCG-GTCCCCCTCAGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG
* * ** * * *
2005634 TCTGGTCCGGTCTTAGACTGTGAATGAACTTTGTATGCCCAAGTCAACCGACGAAACGAGCGGGC
569 TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGT
* * * *
2005699 GGGCAGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAGGGTGGTA
634 AGGCGGGCGGGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * **
2005764 GGTGGGTTTAGGCACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
698 GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
2005829 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGATTCGTTTTCTATTTTTCAT
763 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * * *
2005894 GATTTTTGAAACTTTTTTCGGTTCAGGATTTTTTTAAAATTTTTTTACAATGAATTTTGGTC
828 GATTTTTGAAACTTTTTACGGTTC-GGATTTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCC
** *
2005956 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTGCAAAAAAATTCAGGTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
2006021 CGAAGTGTAAAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
2006086 CTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
2006151 GGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCATACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* *
2006216 CCGACCCCACCAATCGCCGGAACCCCAATTTCGTCGGTCAGGTT-TTCCGACGATGGTGCCCCAG
260 CCGGCCCC-CCAATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTTCCGACGATGGTGCCCCAG
* * * *
2006280 GCGAAAAAAAATATGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCACAACCCTCGGTCTG
324 GCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCG
** * *
2006345 GTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
389 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * **
2006410 TCAACCCACGAAACGAGCGTACGGGCGCTCAGTAGGCTAGAGGGGCAAGATTTGCAAGCCGGGGA
454 TCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * * * * * * *
2006475 TAGGCACGGTCCCCGTCAGTGTGCTGCTGATCCAGCTACCGTAATCCTCAGTCTGGTCCGGTCTC
519 TAGGC-CGGTCCCCCTCAGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTT
**
2006540 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTAAACGGGCGGGCAC
583 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTAGGCGGGCGGGCAC
* *
2006605 TATGCTAGCTC-GAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
648 TACGC-GGC-CAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
**
2006669 ACATCTTCATATTTCTACTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
711 ACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
2006734 TAAGCCTACATGTGAAGTTTCATGGCAAGACGACTCGTTCTCTATTTTTCACGATTTTTGAAACT
776 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * *
2006799 TTTTATGGTTTGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTCGGCC
841 TTTTACGG-TTCGGATTTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCC
* * *
2006848 CCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCACTAAAAAATTCAGCAAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
2006913 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * * *
2006978 CTGGTAGTAATCCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCGAGGTTTGGTGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
** * **
2007043 GGGATAGGGGGGTAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTAAGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* ** *
2007108 C-GCCCCCTAATCATCGGAACCCCAATG-CTGTCGGTCAGGTTCTCTAGCGATGCTCCGGAGATG
261 CGGCCCCCCAATCGCCGGAACCCCAATGTC-GTCGGTCAGGTTCT-T-CCGA-----C---GATG
* * ** *
2007171 GTGCCCC-GAGCGAAAAAAACATACGGCACCAGCATATGCCCGAGCCTAGCATGTGTGCCTGCAA
315 GTGCCCCAG-GCGAAAAAAA-ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAA
* * * * * * * *
2007235 CCCTCGGTCTGGTTCGATCTTATATTGGGAATGAAGTCTGGATGCTTAGACTGGGAATTAACTCC
378 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * * * * * *
2007300 GTATGCCTAAGTCAACCTACAAAAAGAGCTTGCAGGCGCTCAG-CTGGCTAAATGGGTAGGATGC
443 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTC-GGCCAGAGGGGCAGGATGC
* * * * * * * *
2007364 ACAAGCCGGGGATCGACCGGGTCCCCCTTAGCGTGCTGCCAATCCTGCTGCCCCAAACCTC-GAT
507 GCAAGCCGGGGATAGGCC-GGTCCCCCTCAGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG-T
* * * *
2007428 CGGGTCTGATCTTAGACT----AGGAA-TCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGTA
570 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTA
* * * * * * *
2007488 GGCAGGCAGGCAGTATGACGGCCAGAGAGGCGGGATACGCAAGCCATTGATCGATAGGGTGGTAG
635 GGCGGGCGGGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
2007553 GTGGGTTTAGGCACATTTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
699 GTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
2007618 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTGATGGTAAGACGACTCGTTTTCTATTTTTCATG
764 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
2007683 ATTTTTGAAACTTTTTACGGTTAGGGATTTTTTTAAAACTTTTTTAGAAGGAGTTTTGGCC
829 ATTTTTGAAACTTTTTACGGTT-CGGATTTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCC
2007744 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAAC
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAAC
* *
2007809 TCGAAGTGTACAGGATTTTGAGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCT
65 TCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
2007874 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG-GTGAGTTCTCAAGGTTTGATG
130 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
2007938 AGGGATAGGGGGCCAATTTAAGTGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCA
195 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-
* * * * *
2008003 CCAGGCCCCCCCAATTGCCAGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATCCACCGGTGA
259 CCCGG-CCCCCCAATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTTC--CG----A-C---GA
** ** * *
2008068 TGGTGCCCTGGGC-AAAAAAAATGTGGCACCAGCACATGCCCGAGGCCAGCATGTGCACCCACAA
313 TGGTGCCCCAGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAA
* *
2008132 CCCT---T---G---G----T---CT--G---G---TCCG-A-CCTTAGACTAGGAATGAACTCC
378 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
2008171 GTATGCCTAAGTCAACCCACGAAATGAGCATACGGGCGCTCAGTCGGCCAGA-GGGCTAGGATGC
443 GTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGC-AGGATGC
* * * * *
2008235 GCAAGCCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTACCGATCCTGCTACTGCAACCCTCGGT-
507 GCAAGCCGGGGATAGGC-CGGTCCCCCTCAGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTC
* * *
2008299 TCGGTTCGATCTTAGACTGGGAACGAACTCTGTATGCCTAAGCCAACCGACGAAACGA----GT-
571 T-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTA
* * * * * **
2008359 ---GGGCGGGCACTATGGCGGCCAAAGACGCAGGATGCGCAAGCCGTGGATGGATAGCATGGTAG
635 GGCGGGCGGGCACTA-CGCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * * * *
2008421 GTGGGTTTAGGCATATCTTCATATTTCTGCCACGCCAATACCATTTTTATGCCTTGTAAGTTCAT
699 GTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
2008486 ACAACGGTCCCTTAAGCCTTCATGTGATGTTTCGTGGCAAGACGACTCGTTTTCTATTTTTCACG
764 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
*
2008551 ATTTTTGAAACTTTTTACGGTTC-GAGTTTTTTTTAAATTTTTTCAGAAGGAGTTTTGGCC
829 ATTTTTGAAACTTTTTACGGTTCGGA-TTTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCC
* * * *
2008611 CCAAACTTGGTAGATGTAATCCTTGTATTTTTGTTGGCATG-ATAAAAAAATTCAGCTAAAAAGT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
2008675 TGAAGTGTACAGGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
2008740 CTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
2008805 GGGATAGGGGGCCAACATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCGTATC-CCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACCCC
* * *
2008869 CCAGGCCCCCCTCAATCGCCGGAA-CCTAATGCCGTCAGTCAGGTTCTCCGGTGATGTTCCGACG
260 CC-GG-CCCCC-CAATCGCCGGAACCCCAAT---GTC-GTC-GG---TCAGGT--TCTTCCGACG
*
2008933 ATGGTGCCCCAAGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCA
312 ATGGTGCCCCAGGCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCA
*
2008998 ACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
377 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * ** * * * *
2009063 CGTATGCCTAAGTCAACCCAAGAAATGAGCGTGTGGACACTCAGCCAGCCAGAGGGGCAGGAT--
442 CGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGC
* * * *
2009126 GC-A--C----A-A-GCC-G---------GC-TGAT-CC--TACTG-T--CGTAACCCTCAGTCC
507 GCAAGCCGGGGATAGGCCGGTCCCCCTCAGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCT
* * * *
2009165 AGTCCGATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGTAGG
572 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTAGG
* * * *
2009230 CGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCCGTGGATCGGTAGGATGGTAGGT
637 CGGGCGGGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
2009295 GGGTTTAGGCACATCTTCATATTTTTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATGC
701 GGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
2009360 AATGGTCCCTTAAGCCATCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAAT
766 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* *
2009425 TTTTGAAACTTTTTACGGTTTGAGATTTTTTTTAAATTATTTTAGAAGGAGTTTTGGCC
831 TTTTGAAACTTTTTACGGTTCG-GATTTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCC
* **
2009484 CCAAACTTGGTTGATATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
2009549 CGAAGTGTACAGGATTTTGTCAGCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
66 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
2009613 CTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
2009678 GGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCTTCGCACATCATGT--GCATA---CA
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * *
2009738 C--CCCCCCAATCGTC-GAACCCCGATGCCGCCGGTCAGGTTC-TCTGACGATGGTGCCCC-GAG
261 CGGCCCCCCAATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTTCCGACGATGGTGCCCCAG-G
* * *
2009798 CGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCAGTCCGG
325 CGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGG
*
2009863 TCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
390 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * * * * * * * * * *
2009928 CAACATATGAAATGAGCGTACGGGCGCTCAGCCGACCAAAGTGACAAGATGCGCGAGCCAGGGAT
455 CAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * * * ***
2009993 CGATCGGGTCCCCCTCAACGTGCTGCCAATCCTGCTACCGCAACCCTCAGTCCAATCC-AGTCTT
520 AG-GCCGGTCCCCCTCAGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCGA-TCTT
* * * ** **
2010057 AGAATGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGTAGGCGGGCAC
583 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTAGGCGGGCGGGCAC
* * * *
2010122 TACGTTGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
648 TACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * *
2010187 CATCTTCATGTTTCTTCCATGCCAATGCCATTTTTATGGCTTATAAATTCATACAATGG-CCTTT
712 CATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-CT
* * * *
2010251 TAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTGGAAACC
776 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
*
2010316 TTTTACGGTTCGGGATTTTTTTTAAATTTTTTTAGAAGGAGTTTTGTCC
841 TTTTACGGTTC-GGATTTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCC
* * * * * *
2010365 CTAAACTTGGTAGACATGATCCTTGTATTTTTATTGTCTTGCGCAAAAAAATTCAGCTAAAAACT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
2010430 CAAAGTTTACAGGATTTTGTGACCAGTTT-AAAAAAGTGTCACCATTTCAGACACTTTAATGGCT
66 CGAAGTGTACAGGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
2010494 ACTGGCAGCAAACCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTC-ATGGTTTGAT
130 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGAT
*
2010558 GAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---
194 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * * ** * *
2010620 -----CCCCCCAATCACTGGAACCCCAATGCCATTGGTCAACTTC-TCTGGCGATGGTGCCCCAG
259 CCCGGCCCCCCAATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTTCCGACGATGGTGCCCCAG
* * * *
2010679 GCAAAAAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGCAACCCTCGATCCG
324 GCGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCG
* * * * * *
2010744 GTCCAATCTTAGACTAGGAATGAACTCTGTATGCTTAGACCGGGAATAAACTCCATATGCCTAAG
389 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
2010809 TCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGACCAGAGGGGCAGGATACGTAAGTCGAGGA
454 TCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * * * * * * *
2010874 TCGGTCGGGTCCCCCTCTA-CATGCTACCGATCTTGCTGCTGCAACCCTCAGTCTGGTCTGATCT
519 TAGG-CCGGTCCCCCTC-AGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCT
* **
2010938 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATAAGCGGGT----GGGCGGGCA
582 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTAGGCGGGCGGGCA
* * *
2010999 CTACGTCGGCCAGAGAGGCGGGATGCGTAAGCCATGCATCGATAGGGTGGTAGGTGGGTTTAGGC
647 CTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * **
2011064 TCATCTTCAGATTTCTACCATGCCAATGCCATTTTTATGGCTTGTTTATTCATACAATGGTCCCT
711 ACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
2011129 TAAGCATTCATGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
776 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * * *
2011194 TTTTATGGTTCGAGATTTGTTTAAAATTTTTTCAGAAGGAGTTTTGGCC
841 TTTTACGGTTCG-GATTTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCC
* * *
2011243 CCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAGT
1 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
**
2011308 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCTTACACTTTAATGGCTA
66 CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
2011373 CTGGCAGCAAACCTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
131 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
2011438 GGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCACACCCCC
196 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * * * * * *
2011503 AGGCCCCCTAATCGGCGAAACCCTAATG-CCTCCGGTCAAGTTCTCCGATGATGCTCCGACGATG
261 CGGCCCCCCAATCGCCGGAACCCCAATGTCGT-CGGTC-AGGT-T-C-----T--TCCGACGATG
* * ** * * *
2011567 GTGGCCAAAACGAAAAAAAATACGACACCAG--CATCCCTCGAGCCCAGCATGTGGACCCGCAAC
315 GTGCCCCAGGCGAAAAAAAATACGGCACCAGCACATGCC-CGAGCCCAGCATGTGCACCCGCAAC
* * **
2011630 CCTTGGTCCGGTCCAATCTTAGACTGAAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
379 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * * ** * *
2011695 TATGCCAAAGTTATCCCATGAAACAAGTGTACGGGCGCTCAGCCAACCAGA-GGGCAGTATGTGC
444 TATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGC
* * * * * * * ** * ** *
2011759 AAGTCGAGAATCGACCGAGTCCCCTTCAGC-TGCTACTAATCCTACT-GTGACAACCCTCAGTTT
509 AAGCCGGGGATAGGCCG-GTCCCCCTCAGCGTGCTGCCGATCCTGCTACCG-CAACCCTCAGTCT
* *
2011822 GGTCCGAACTTAGACTGGGAATGAACTTCGTA
572 GGTCCGATCTTAGACTGGGAATGAACTCCGTA
2011854 AGTCAACCCA
Statistics
Matches: 5071, Mismatches: 643, Indels: 374
0.83 0.11 0.06
Matches are distributed among these distances:
852 179 0.04
853 1 0.00
854 2 0.00
855 6 0.00
857 1 0.00
858 2 0.00
859 2 0.00
860 2 0.00
861 1 0.00
862 3 0.00
863 11 0.00
864 67 0.01
865 125 0.02
866 104 0.02
867 136 0.03
868 191 0.04
869 7 0.00
870 10 0.00
871 139 0.03
872 196 0.04
873 220 0.04
874 56 0.01
875 7 0.00
876 35 0.01
877 4 0.00
878 455 0.09
879 5 0.00
880 5 0.00
881 384 0.08
882 444 0.09
883 4 0.00
884 6 0.00
885 3 0.00
886 23 0.00
887 2 0.00
888 5 0.00
889 46 0.01
890 159 0.03
891 18 0.00
892 562 0.11
893 76 0.01
894 61 0.01
895 38 0.01
896 500 0.10
897 199 0.04
898 9 0.00
899 53 0.01
900 247 0.05
901 259 0.05
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CGGCCCCCCAATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTTCCGACGATGGTGCCCCAGGC
GAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCGGT
CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATA
GGCCGGTCCCCCTCAGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTAGGCGGGCGGGCACTAC
GCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
CGGTTCGGATTTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCC
Found at i:2009046 original size:26 final size:26
Alignment explanation
Indices: 2009017--2009069 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2009007 CCGGTCCGAT
*
2009017 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2009043 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2009069 C
1 C
2009070 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2009905 original size:26 final size:26
Alignment explanation
Indices: 2009869--2009921 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2009859 CCGGTCCGAT
*
2009869 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2009895 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2009921 C
1 C
2009922 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2011676 original size:26 final size:26
Alignment explanation
Indices: 2011647--2011699 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2011637 CCGGTCCAAT
2011647 CTTAGACTGAAAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCGTATG
**
2011673 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCGTATG
2011699 C
1 C
2011700 CAAAGTTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAAAATGAACTCCGTATG
Found at i:2014158 original size:26 final size:26
Alignment explanation
Indices: 2014122--2014174 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2014112 CCGGTCCGAT
* * *
2014122 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
2014148 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
2014174 C
1 C
2014175 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:2015048 original size:26 final size:26
Alignment explanation
Indices: 2015010--2015062 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2015000 CTGGTCTGAT
*
2015010 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTGCGTATG
*
2015036 CTTAGACTGGGAATGAACTGCGTATG
1 CTTAGACTAGGAATGAACTGCGTATG
2015062 C
1 C
2015063 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTGCGTATG
Found at i:2016945 original size:26 final size:26
Alignment explanation
Indices: 2016868--2016946 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
2016858 CTGGTGCAAT
* *
2016868 CTTAGATTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATG
2016894 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2016920 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2016946 C
1 C
2016947 CTAAGGCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2017823 original size:26 final size:27
Alignment explanation
Indices: 2017782--2017857 Score: 113
Period size: 26 Copynumber: 2.9 Consensus size: 27
2017772 CTAATCCGAT
*
2017782 CTTACACTGGGAATGAACTCT-GTATG
1 CTTAGACTGGGAATGAACTCTCGTATG
*
2017808 GTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCTCGTATG
2017834 CTTAGACTGGGAATGAACTC-CGTA
1 CTTAGACTGGGAATGAACTCTCGTA
2017858 CGCCTAAGCC
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
25 1 0.02
26 44 0.98
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCTCGTATG
Found at i:2018629 original size:910 final size:911
Alignment explanation
Indices: 2016777--2018716 Score: 2815
Period size: 914 Copynumber: 2.1 Consensus size: 911
2016767 NNNNNNNNNA
* * *
2016777 TCTCCGACGATGGTGCC-CGGGCAAAACAAATACGGCACCAACACACGCCCAGGCCCAGCATGTG
1 TCTCCGACGATGGTGCCTCGGGCAAAAAAAATACGGCACCAGCACAAGCCCA-GCCCAGCATGTG
* *
2016841 CACCCGCAACCCTCGGTCTGGTGCAATCTTAGATTGGGAATGAACTCCGTATACTTAGACTGGGA
65 CACCCGCAACCCTCGGTCTGATCCAATCTTAGA-TGGGAATGAACTCCGTATACTTAGACTGGGA
* * *
2016906 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCCACGAAACGAGCG
129 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCCAAGAAACGAGCG
* * * * *
2016971 TGCGGGTGCTCAGCAGGCCAGAGGGGTAGGATGCGCAAGTCGGAGATCAGTCGGGTCACCCTCAA
194 TACGGGCGCTCAGCAGGCCAGAAGGGTAGGATGCGCAAGCCGGAGATCAGCCGGGTCACCCTCAA
* * * * *
2017036 TGTACTGTCGATCCTACTGCCGCAACCTTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCG
259 CGTACTGTCGATCCTACTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * *
2017101 TATGTCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCATAGAGGCC
324 TATGCCTAAGCCAACCGACG-AACAAGCGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCC
*
2017166 GGATGCACAAGCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTACCA
388 GGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCA
*
2017231 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
453 TGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
*
2017296 CATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCAAGATTTTT
518 CATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACAGTTCAAGATTTTT
*
2017361 TAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
583 TAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGATAGACGTGATCCTTGTATTTTTGTTG
* *
2017426 GCATGCACAAAAAAATTCAGCTAAGAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
648 GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAG
* * * *
2017491 TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTA
713 TATCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATACTCTTTA
2017556 AGGGGGTGTGAGTTCTCGAAGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
778 AGGGGGTGTGAGTTCTCGAAGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
** *
2017621 CCCATCACACATCATGTGCGCAAAACCCCCCGCCCCCAATTGCCGGAACCCCATTGCCGTCGATC
843 CCCATCACACATCATGTGCGCAAAACCCCCCGCCCCCAATCACCGGAACCCCAATGCCGTCGATC
*
2017686 AGGT
908 AGAT
* * * *
2017690 TCTCCGGCAATAGTGGCCT-GGGCAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
1 TCTCCGACGATGGT-GCCTCGGGCAAAAAAAATACGGCACCAGCACAAGCCC-AGCCCAGCATGT
* * * * * **
2017754 GCACCCGTAACCCTCGGTCTAATCCGATCTTACACTGGGAATGAACTCTGTATGGTTAGACTGGG
64 GCACCCGCAACCCTCGGTCTGATCCAATCTTAGA-TGGGAATGAACTCCGTATACTTAGACTGGG
* *
2017819 AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCTAAGAAACGAGC
128 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCCAAGAAACGAGC
* * * * * *
2017884 GTATGGGCGCTCAGCCGGCCAGAAGGGTAGGTTGCGTAAGCC-GAGGATCGGCCGGGTCCCCCTC
193 GTACGGGCGCTCAGCAGGCCAGAAGGGTAGGATGCGCAAGCCGGA-GATCAGCCGGGTCACCCTC
** * * * * *
2017948 TGCGTGCTG-CTGATTCTGCTATCACAACCCTCGGTCCGGTCTGTTCTTAGACTGGGAATGAACT
257 AACGTACTGTC-GATCCTACTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
2018012 CCGTATGCCTAAGCCAACCGACG-A-AA-CGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGG
321 CCGTATGCCTAAGCCAACCGACGAACAAGCGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGG
* *
2018074 CGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATATTTCTAC
386 CCGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* *
2018139 CATGCCAATTCCATTTTTATATCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
451 CATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* ** **
2018204 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTATGGTTCGGGATTT
516 TTCATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACAGTTCAAGATTT
* ** * ** * *
2018269 TTTTAAAATTTTTTTGGAAGGATTTTTGGCCTGAAACTT-ATAGATGTGATCCGTT-TATTTTTT
581 TTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGATAGACGTGATCC-TTGTATTTTTG
2018332 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAA
645 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAA
* * *
2018397 AAGTATCCCCATTTCAGACACTTTAATAGCTACTGGCAGGAAACTTGTAAAATCT-AAATTACTC
710 AAGTATCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAA-TACTC
* * * ** *
2018461 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGGCCAATATAAGGGTGAAGTACT
774 TTTAAGGGGGTGTGAGTTCTCGAAGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
2018526 AGCACCCATCGCACATCATGTGCGC-ACACCCCCTCGGCCCCCCAATCACCGGAACCCCAATGCC
839 AGCACCCATCACACATCATGTGCGCAAAACCCCC-C-G-CCCCCAATCACCGGAACCCCAATGCC
2018590 GTCGATCAGAT
901 GTCGATCAGAT
* *
2018601 TCTCCGACGATGGTGCCTCGGGAAAAAAAAATACGACACCAGCACAAGCCCAAGCCCAGCATGTG
1 TCTCCGACGATGGTGCCTCGGGCAAAAAAAATACGGCACCAGCACAAGCCC-AGCCCAGCATGTG
* * *
2018666 CACCC-CAACCCTCAGTCCGATCCAATTTTAGATGGGAATGAACTCCGTATA
65 CACCCGCAACCCTCGGTCTGATCCAATCTTAGATGGGAATGAACTCCGTATA
2018717 GCCTTAAGTC
Statistics
Matches: 910, Mismatches: 106, Indels: 26
0.87 0.10 0.02
Matches are distributed among these distances:
908 10 0.01
909 235 0.26
910 276 0.30
911 93 0.10
912 1 0.00
913 14 0.02
914 280 0.31
915 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (911 bp):
TCTCCGACGATGGTGCCTCGGGCAAAAAAAATACGGCACCAGCACAAGCCCAGCCCAGCATGTGC
ACCCGCAACCCTCGGTCTGATCCAATCTTAGATGGGAATGAACTCCGTATACTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCCAAGAAACGAGCGTA
CGGGCGCTCAGCAGGCCAGAAGGGTAGGATGCGCAAGCCGGAGATCAGCCGGGTCACCCTCAACG
TACTGTCGATCCTACTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGCCAACCGACGAACAAGCGAGCGGACGGGCGGGCACTACGCCGGCCAGAGAGGCCGGA
TGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGC
CAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
GGCAAGACGACCCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACAGTTCAAGATTTTTTAA
AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGCA
TGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTAT
CCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATACTCTTTAAGG
GGGTGTGAGTTCTCGAAGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCACACATCATGTGCGCAAAACCCCCCGCCCCCAATCACCGGAACCCCAATGCCGTCGATCAGA
T
Found at i:2020285 original size:26 final size:26
Alignment explanation
Indices: 2020249--2020301 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2020239 CCGATCCGAT
*
2020249 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
* *
2020275 CTTAGATTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
2020301 C
1 C
2020302 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:2021190 original size:26 final size:26
Alignment explanation
Indices: 2021153--2021203 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
2021143 CTATCCGATC
* *
2021153 TTAGACTAGGAATGAACTCTGTATGT
1 TTAGACTAGGAATCAACTCCGTATGT
*
2021179 TTAGACTGGGAATCAACTCCGTATG
1 TTAGACTAGGAATCAACTCCGTATG
2021204 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATCAACTCCGTATGT
Found at i:2021665 original size:906 final size:890
Alignment explanation
Indices: 2019532--2022354 Score: 3644
Period size: 889 Copynumber: 3.2 Consensus size: 890
2019522 GGTGCACTCA
* * * *
2019532 CAACCCTCTGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCAGTCC-GTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* * *
2019597 ATGAGT----GGGC-G--GGCACTACGC-CGACTAGAGAAGCAGGATGCGCAAGCCGTGGATCGA
65 ATGAGTGGGCGGGCGGCAGGCACTACGCGCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGA
* * *
2019654 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCCTGCCAATGCCACTTTTATGGCT
130 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTATGGCT
2019719 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
2019784 TATTTTTCATGATTTTTGAAACTTTTTACGGTCCAGGATTTTTTTAAAATTTTATCAGAAGAAGT
260 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAG-AGT
* * * * *
2019849 TTTGGCCCCAAACTTGGTAGTCGTTATTCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAACT
324 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* * *
2019914 AAAAACTTTAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACATTTTA
389 AAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
2019979 ATGGCTACTGGCAGTAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
454 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
2020044 TTAATGA-GGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCGCACATCACGTGCGCA
519 TTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
2020107 CACCCCCCCCGCCCCCCAATCGTCGGAACCCCAATGC--CA-CCGGTC--AGGTTCTCCGACGAT
583 CA-CCCCCCCGCCCCCCAATCGTCGAAACCCCAATGCGTCATCAGGTCTTCGGTTCT-CGGCGAT
*
2020167 GGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAAC
646 GGTGCCC-GGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAAC
*
2020232 CCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATCAACTCCG
710 CCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCG
* * *
2020297 TATGCCTAAGTCAACCCACGAAACGAA-CGTGCGGGCGCTCAACCGGCCATAGGGGTAGGATGCG
775 TATGCCTAAGTCAACCCACGAAAC-AAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG
* * * *
2020361 AAAGTCGGGGATCGACCGGGTCCCCTTCAGCGTGCTACCGATCCTACTACCG
839 CAAGCCGGGGATAGACCGGGTCCCCCTCAGCGTGCTACCGATCCTACTACCG
* * * * * *
2020413 CAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGGATGCCTAAGACATCCGACGAA
1 CAACCCTCAGTCCGTTC-GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* * *
2020478 ACGAGCGGGCAGGCGGGCAGGCACTACGCAG-G-CCAGAGAGGCGGGATGCGCAAGCCGTGGATC
65 ATGAGTGGGCGGGC-GGCAGGCACTACGC-GCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* **
2020541 GATAGGGTGGTAGGTGGATTTAGGTGCATCTTCATATTTCTTCCATGCCAATGCCATTTTTATGG
128 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTATGG
*
2020606 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCGAGACGACTCGTTT
193 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
2020671 TTTATTTTTCATGATTTTTGAAAGTTTTTACGGTTCGAGA-TTTTTTAAAAGTTTTTTCAGAAGG
258 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAA-TTTTTTCAGAA-G
* * * *
2020735 TGTTTTGGGCCCAAACTCGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
321 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * *
2020800 GCTAAAAACTCGAAGTGTACAGGATTTTGTGATCGTTTGAAAAAAGTGTCCCCATTTCAGACACT
386 GCTAAAAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
2020865 TTAATGGCTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
451 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
2020930 GGTTTGATGAGGGAAAATGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTG
516 GGTTTGATGAGGG-ATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*
2020995 CGCACACCCCCTCCAGCCCCCCCAATC-ACTGAAACCCCAATGCCGTCAATCAGGTTCTTCGGTG
579 CGCACACCCCC-CC-G-CCCCCCAATCGTC-GAAACCCCAATG-CGTC-ATCAGG-TCTTCGGT-
* * ** *
2021059 ATGCTCGGCGATGGTGCCCGGGTGAAAAAAAATGTGGCACCAGGTCATGCCCAAGCCCAGCATGT
636 -T-CTCGGCGATGGTGCCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * ** *
2021124 GCACCCGCAACCCTCGGTCCTATCCGATCTTAGACTAGGAATGAACTCTGTATGTTTAGACTGGG
699 GCACCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* ** * *
2021189 AATCAACTCCGTATGCCTAAGTCAACACACGAAACAAGCGTATGGGTGCTCAGCCAGCCAGAGGG
764 AATCAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* *
2021254 GCAGGATGTGCAAGCCGGGGATA-AGCCGGGTCCCCCTCTA-CGTGCTATCGATCCTACTACCG
829 GCAGGATGCGCAAGCCGGGGATAGA-CCGGGTCCCCCTC-AGCGTGCTACCGATCCTACTACCG
* * * **
2021316 TAACCCTCAGTCCGATTCAATCTTAGACTGGGAATGAACTCTGTACGCCTAAGCCAACTAACGAA
1 CAACCCTCAGTCCG-TTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
2021381 ATGAGTGGGCGGGCAGGCAGGCACTACGTCGTCGACCAGAGAGGCGGGATGCGCAAGCCGTGGAT
65 ATGAGTGGGCGGGC-GGCAGGCACTACG-CG-CGACCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* * *
2021446 CGATAGGGTGGTAGGTGGGTTTAGGCACATATTCATATTTTTTCCATGCCAAAGCCATTTTTATG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTATG
* * *
2021511 GCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATGTAAAGTTTCATGGTAAGACGACTCGTT
192 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
2021576 TTCTATTTTTCATGATTTTTTAAACTTTTTACGGTTCGGGATTTTTTTTAAATTTTTTCGGAATG
257 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA-G
* *** *
2021641 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTAGTATTTTTGCGGGCATGCAC-AAAAAATCCA
321 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * *
2021705 GCTAAAAACTTGAACTATATATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
386 GCTAAAAACTTGAA--GTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
2021770 CTTTAATGCCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTC
449 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
2021835 GAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGT
514 GAGGTTTGATGAGGGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
2021900 ACGCACACCCCCCCGTCCCCCCAATCGTCGAAACCCCAAT--GTCGTC-GGTC--AGGTTCTCTG
578 GCGCACACCCCCCCG-CCCCCCAATCGTCGAAACCCCAATGCGTCATCAGGTCTTCGGTTCTC-G
* * *
2021960 GCAATGGTGCCCCGGGCAAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
641 GCGATGGTG-CCCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
* * *
2022025 GTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAA
705 GCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAA
* * * *
2022090 CTCCGTATG-GTAAATCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCATGA
770 CTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGA
* ** * * * * ** *
2022154 TGCGCAA------G-T----TGGGTCTTCCTAAGCGTGCTGCTGATCCTGCTGTCA
835 TGCGCAAGCCGGGGATAGACCGGGTCCCCCTCAGCGTGCTACCGATCCTACTACCG
* * * *
2022199 CAACCCTCAGTTCTGTCCGATCTTAAACTGGGAATGAACT-TCGTTTGCCTAAGCCAACCGACGA
1 CAACCCTCAG-TCCGTTCGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGA
* * ** * * * * * *
2022263 AACGAGTGGGAGGGCGGGTGGGCACTTCAC-CGGCCAGAGAGGTGGGTTGCACAAGCCGTGG-TC
64 AATGAGTGGGCGGGC-GGCAGGCACTACGCGCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATC
* *
2022326 GATATGGTGGTAGGTGGGTTTAGACACAT
128 GATAGGGTGGTAGGTGGGTTTAGGCACAT
2022355 TTAACAGCTA
Statistics
Matches: 1688, Mismatches: 205, Indels: 100
0.85 0.10 0.05
Matches are distributed among these distances:
879 29 0.02
880 29 0.02
881 56 0.03
882 3 0.00
883 94 0.06
884 3 0.00
885 3 0.00
887 2 0.00
888 11 0.01
889 391 0.23
890 4 0.00
891 20 0.01
892 39 0.02
893 5 0.00
894 83 0.05
895 114 0.07
896 3 0.00
897 1 0.00
898 3 0.00
899 5 0.00
900 4 0.00
901 3 0.00
902 6 0.00
903 280 0.17
904 40 0.02
905 32 0.02
906 297 0.18
907 128 0.08
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
CAACCCTCAGTCCGTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
TGAGTGGGCGGGCGGCAGGCACTACGCGCGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
AAACTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCCGCCCCCCAATCGTCGAAACCCCAATGCGTCATCAGGTCTTCGGTTCTCGGCGATGGTGC
CCGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGA
TCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAACTCCGTATGCC
TAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
GGGATAGACCGGGTCCCCCTCAGCGTGCTACCGATCCTACTACCG
Found at i:2022083 original size:26 final size:26
Alignment explanation
Indices: 2022047--2022098 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
2022037 CCGGTCCGAT
2022047 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2022073 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2022099 GTAAATCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2022692 original size:26 final size:26
Alignment explanation
Indices: 2022641--2022693 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2022631 CTGGTCCGAT
**
2022641 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2022667 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
2022693 C
1 C
2022694 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2024354 original size:873 final size:871
Alignment explanation
Indices: 2022347--2037606 Score: 10454
Period size: 871 Copynumber: 17.0 Consensus size: 871
2022337 AGGTGGGTTT
** *
2022347 AGACACATTTAACAGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGA
1 AGACAC-TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
2022412 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACA
65 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
2022477 TCATGTGCGTACACCCCCCCGGCCCTCCAAATCGCC-GAACCCCAATGCCGCCGGTAAGGTTCTC
130 TCATGTGCGCACA-CCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * *
2022541 CGGTGATGCTCCGACGATGGTGCCTCAGGG-GAAAAAAAATACGACACCAGCACATGC-CTGAGC
194 CGGCGATGCTCTGAGGATGGTGCC-CCGGGTGAAAAAAAATGCGGCACCAGCACATGCTC-GAGC
*
2022604 CCAGCATGTGCACCCATAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCT
257 CCAGCATGTGCACCCGTAA-CC-C--T-T-G---G-TC-----C-----A-G-A-TCTG-AT-CT
** * * * ** *
2022669 TAGACTGGGAATGAACTCCATATGCCTAAGTCAATCCACGAAACGAGTGTGCCGATGCTCAGCCG
297 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCG
* * * * * * *
2022734 GCCAGAGGGGCAAGATGCCCTAGTCGGGGATCGATCAGGTCCCCCTCTGTGTGCTGCCAATCCTG
362 GCCAGAGGGGCAGGATGCGCAAGTCGGGGATCG-TCGGGTCCCCCTCAGCGTGCTGCCGATCCTG
** * * ** *
2022799 CTA-CCGCAACCCTCGGTCCGGTCTGATAATAGA-TTGTCAATGAACTCTATAAGCCTAAGCCAA
426 C-AGCCGCAACCCTCGGT-CGGTCTGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAGCCAA
* * *
2022862 CTGACGAAACGAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCATGCCA
488 CCGACGAAACGAGC--G-G-GCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCG
* * * * * * *
2022927 TGGATCAATAAGGTGGTAGGTGGG-TTAGGCACATCTTCATATTTTTTCCGTGCCAATACCACTT
549 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* *
2022991 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGAC
614 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * * *
2023056 TCGTTTTCTATTTTTCACGCTTTTTCAAACTTTTTACGGTTTGAGATTTTTTTTAAATTTTTTCA
679 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
**
2023121 GAAGGAGTTTTATCCCCAAACTTGGTA-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
744 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
2023185 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTC
809 ATTCAGCTAAAAACTCGAAGTATACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
2023248 AGACACTTTAATGGCTACTGACAGCAAACCCGTAAAATCTCAACTGCTCTTTAAGAGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
2023313 TTCTTGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
2023378 CATGTGCGCACACCCCCCCAGCCCGCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCT
131 CATGTGCGCACA-CCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * * * *
2023443 GGTGATGCTTTG-GCGATAGTGGCCCGGGCGAAAACAAATGCGGCACCAGCACAAGCCCGAGCCC
195 GGCGATGCTCTGAG-GATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCC
2023507 AGCATGTGCACCCGTAACCCTTGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCTGTATGCCT
259 AGCATGTGCACCCGTAACCCTTGGTCCAGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCT
* * * * *
2023571 AAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGTGCAAGCCGG
324 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGTCGG
* * * * * * * *
2023636 GGACCAGTCGGGTCCCCCTCAGTGTGCTACTGGTCCTGCAGCCGTAACCCTCGATCTGGTCTAAT
389 GGATC-GTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCAGCCGCAACCCTCGGTC-GGTCTGAT
* * * *
2023701 CTTAGACTAGGAATGAACTCCGTCTACCTAAGCCAACGGATGAAACGAGCGGGCGGGCGGGCACT
452 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* ** * * * *
2023766 ATGCCGAACAGAGAGGCGGGATGGGCAAGCCGTGGATTGGTAGGGTGGTAGGTGGGTTTAGGCAC
517 ACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
2023831 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCGCTTA
582 ATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * *
2023896 AGCCTTCATGTGAAGTTTCATGGCAAAAGGACTCGGTTTCTATTTTTCACTATTTTTGAAACTTT
647 AGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * *
2023961 TTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACGTGGTATACATG
712 TTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
2024026 ATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCCAAAAACTCGAAGTATACAGGATTTT
777 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGGATTTT
2024091 GTGACCATTTGAAAAAAGTGTCCCCATTTC
842 GTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
2024121 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCGCTTTAAGCGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
2024186 TTCTCGAGGTTTGACGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCCCCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* **
2024250 CATGTGCGCACACCCCCTCCGGCCCCCCCAATCATCGGAACCCCAATGCCATCGGTCAGGTTCTC
131 CATGTGCGCACA-CCCC-CCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
2024315 CGACGATGCTCTGAGGATGGTGCCCCGGGTGAAAACAAATACGGCACCAGCACATGCTTGAGCGC
194 CGGCGATGCTCTGAGGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCC
* * *
2024380 GGCATGTGCACCCGTAACCCTTGGTCC-GGTCCGATCTTAGACTGGGAATGAACTCCT-TATGCC
259 AGCATGTGCACCCGTAACCCTTGGTCCAGATCTGATCTTAGACTGGGAATGAACT-CTGTATGCC
* * * * *
2024443 TACGTGAACCCACGAAACAAGCGTGCGGGTGCTCAGTGGGCCAGAGGGGCAGGATGCGCAAGTCG
323 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGTCG
* * * * ** * *
2024508 GGGATCGGCTGGGTCCCACTCAGCGTGCTGCCGATCCTACTGTTGCAACCCTCGGTCCGATCCGA
388 GGGATCGTC-GGGTCCCCCTCAGCGTGCTGCCGATCCTGCAGCCGCAACCCTCGGT-CGGTCTGA
**
2024573 TCTTAGACTAGGAATGAACTCTATATGCCTAAGCCAACCGACGAAACAAGTAGGTGGGCGGGCGG
451 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-----GCGGGCGG
* * * *
2024638 GCAGGCACTACGCCAGCCAGTGAGGC-GAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGG
508 GCGGGCACTACGCCGGCCAGAGAGGCAG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
2024702 GTTTAGGCCCATCTTCATTTTTCTGGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
572 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
** *
2024767 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCATGATTT
637 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * * * ** *
2024832 TCAAAATTTTTTACGTTTCGGGATTGGTTAAAAAAATTTTT-AGAAGGAGTTTTGGCCCCAAACT
702 TTGAAACTTTTTACGGTTCGAGATT-TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
* *
2024896 TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT-----T-
766 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTA
* *
2024955 GA-A-G--TTTGTGACCATTTGAAAAAAGTCTCCCCATTTC
831 TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
2024992 AGACACTTTAATGGCTACTGACAGCTAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
2025057 TTCTCGCGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCACCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
2025122 CATGTGCGCACACCCCCCGG-CCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGATCTCTG
131 CATGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * * * * *
2025186 ACGAAGCTCCG-GTGATGGTACACTGGGTGAAAAAAAATGTGGCACTAGCACATGCTCGAGTCCA
196 GCGATGCTCTGAG-GATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCA
*
2025250 GCATGTGCACCCGCAACCCTTGGTCTAGTTCGATCTTAGACTGGGAATGATCTCCGTATGCTTAG
260 GCATGTGCACCCGTAACCC----T-T-G---G-TC-----C-----A-GATCT--G-AT-CTTAG
* ** **
2025315 ACTGGGAATGAACTCCGTATGCCTAAGTCAAAACACGAAACGAGCGTGCGGGCATTCAGTCGGCC
300 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
* * * * *
2025380 AGAGGGGCAGGATACGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG
365 AGAGGGGCAGGATGCGCAAGTCGGGGATC-GTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCAG
** *
2025445 TTGCAACCCTCAGTTCGGTCTGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGAC
429 CCGCAACCCTC-GGTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * *
2025509 AAAACGAGCGGATGGGCGGGCGAGCACTACGCCGGCCAGAGAGGCAGGTTGCGCAAGCCGTGGAT
493 GAAACGAGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGAT
* *
2025574 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATTCCAATGCCATTTTTATG
554 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
* *
2025639 GCTTGTAAATTCATACAATGGTTCCTTAAGCCTTCATGTGAGGTTTCATGGCAAGACGACTCGTT
619 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
2025704 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTCAGAAGG
684 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG
*** *
2025769 AGTTTTGGTATCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTA
749 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
2025834 GCTAAAAACTCGAAGTGTACTGGATTTTGTGACAATTTGAAAAATGTGTCCCCATTTC
814 GCTAAAAACTCGAAGTATACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
2025892 AGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
2025957 TTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACTT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
2026022 CATGTGAGCACACCCCCC-GCCCCCCCAATCGCCGAAACCCTAATGCTGCCGGTCATGTTCTTCG
131 CATGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * *
2026086 GCGATGCT-TCAACGATGGTGGCCCGGGTGACAAAAAAATGTGGCACCAACACAAGCTCGAGCCC
196 GCGATGCTCT-GAGGATGGTGCCCCGGGTGA-AAAAAAATGCGGCACCAGCACATGCTCGAGCCC
* * * *
2026150 AGTATGTGCACCCGCAACCTTTGGT-CTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCT
259 AGCATGTGCACCCGTAACCCTTGGTCCAGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCT
* * * * * * * *
2026214 CAGTTAACCCATGGAACGAGCGTGCGGGCGCCCAGTCGGCCAGTGAGGTAGGATGCGCAAGTCGG
324 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGTCGG
* * * * *
2026279 GTATCGGTCGGGTCCCCCTCAGCGTGCTGTCGATCCTGCTA-CCGCAACCCTTAGTTCGATCTGA
389 GGATC-GTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGC-AGCCGCAACCC-TCGGTCGGTCTGA
* * * **
2026343 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGTGGACGAGCGGGATG
451 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGGCGGGCGG
* * *** *
2026408 GCACTACGTCGGCCAGAGAGGCAGGATGCGCAAGCCATGGATCGATAGGGTGGTACACGGGGTTA
512 GCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
2026473 GGCACATCTTCATATTTTTGCCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTC
577 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * *
2026538 CCTTAAGCCTTCATGTGAATTTTCATGCCAAGACAACTTGTTTTCTATTTGTCACGATTTTTGAA
642 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
2026603 ACTTCTTACGGTTCGAGATTTTTCTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAG
707 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
2026668 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-----A-A-A-G
772 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGG
*
2026725 --TTTGTGACTATTTGAAAAAAGTGTCCCCATTTC
837 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
2026758 AAACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
2026823 TTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** ** * ** * *
2026888 CATGTGCGCCCACCCCTCTGG-CCCCAAACATGCTAGATGTGATCCTTGTATTTTTGTGGGCATG
131 CATGTGCGCACACCCC-CCGGCCCCCCCA-AT-C-A-CCG-GAACC--CCA-----AT--GC-CG
**** ** **** * * * * * *** *
2026952 CACAAAAAAATT-TCGCTAAAAATTTGAAGTGTACAGGATTTTGTG-ACCATTTG-AAAAAAGTG
180 C-CGGTCAGGTTCTC-C-GGCGA--TG--CTCT-GAGGA--TGGTGCCCCGGGTGAAAAAAAATG
* * * * ** * ** * * * **
2027014 TC-CCAATTTCATACATTTTAATGGCTACTGGCAGCAAATC-TGTAAAATCTGAAATGCTTTTTA
235 -CGGC-A--CCA-GCA----CAT-GCT-C--G-AGCCCAGCATGT-GCACCCGTAA--C-CCTT-
** * ** * * * *
2027077 AGCGGGTGTGAGTTCTCGAGGTTTGA-TGAGGGATAGGGGGCCAA-TATG-AGGGCC-AAGTGCC
281 ----GGT-CCAGATCT-GATCTTAGACT--GGGA-A---TG--AACTCTGTA-TGCCTAAGT--C
* * * *** *
2027138 AGCACCCATCGCACATCATGTGCGTAAACCCCCCACCCCCTGTCA-TCGGAACCCCA-ATGCCGT
329 A--ACCCA-CG-A-A--ACGAGCGT-------GCGGGCGC--TCAGTCGG----CCAGA-G--G-
* * * * * *** ** ** * *
2027201 CGGTCAAGTTCTCTGGCGATGGCGCCCCGGGCAAAAAAAAATGCGGCACCAACACATGCCCGAGC
370 -GG-CAGGAT-GC--GC-AAGTCG----GGG------ATCGT-CGGGTCCCCCTCA-G--CGTGC
* * ** ** * * *
2027266 --CCAGTAT-GTGCACCCTTAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATAT
415 TGCC-G-ATCCTGCAGCCGCAACCCTCGGT-CGGTCTGATCTTAGACTAGGAATGAACTCCGTAT
* ** * * * * *
2027328 GCTTAGACGGGGAATGAATTTCGGATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT-CA
477 GCCTA-A----G--CCAA---CCGA---C---G--AA---ACG-AGCGGGCGGGCGGGCACTAC-
* * * * ** ** * **
2027392 GCCTGCCAGAG-GGACAGGATGCGCAAGCTGGGGATCAGCT-GGGTCCCCT-TTTGCGTGCA-GC
519 GCCGGCCAGAGAGG-CAGGATGCGCAAGCCGTGGATC-GATAGGGT--GGTAGGTGGGTTTAGGC
* * * **** ** * *** *** * ** * *
2027453 -CGGTCCTAATGCCACAACCCTCAGTCTGGTTAAATTTTAGACTAGGAATG-AAATCCGTATGCC
580 AC-ATCTTCATATTTCTGCCAT--G-CCAATGCCATTTT-TA-T-GGCTTGTAAATTC--AT-AC
* ** ** *** * * * *** * * ** **
2027516 AAAGCCAACCGACGAAACGAGCGGGCAGGCGGGCAGGCACTACGCGACCAGAGA-GGCGGGATGC
635 AATG--GTCC--C-TTA--AGCCTTCA--TGTGAAGTTTC-ATG-G--CA-AGACGACTCG-TTT
* * *** ** ** * * ** * * * * * **
2027580 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GG--C-ACA---TCTTCATATTTCTGCC
685 TCTA-TTTTTCA-CGAT--TTTTGAAACT--TTTTACGGTTCGAGATTTTTTTAAAATTT-TTTC
* * *** ** * * * ***
2027638 ATGCCAATGCCATTTTTATGGCTTGTAAA-TTCATACA-ATGGTCCCTTAAGCCTTCATGTGAAG
743 A-G--AA-G-GA-GTTT-TGGC-CCCAAACTTGGTAGACGTGAT-CCTT--G---T-AT-TTTTG
* * * ** * ** * * * * * **
2027701 TT-TCATG-GCAAGACGACTC-G-T----TTTC-TATTTTTCACGATTTT-TGAAACTTTTTACG
792 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGGATTTTGTG--ACCATTT--G
**** *** *
2027756 GTTCAAGAT-T--TTTTTTA
853 AAAAAAG-TGTCCCCATTTC
* *** * * ** ** * ** * ** * * *** *
2027773 AAATTTTTTCAGAAAGGGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTTTTGGC
1 AGACACTTT---AATGGCTACTGGCAGCAAACCT-GTA-AAAT-CTCAAATG-CTCTTTAAGGGG
* ** * ** *** * * ** * * * **
2027837 ATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACC-ATTTGAA---AAAA
59 GTG-----TGAGTT---CTCGAGGTTTG-A-TG-A-GGGA-TAGGGGGCCAATAT-AAGGGCCAA
* * * * * ** *
2027898 GT----GTC-CCCATTTCAGACACTTTA-ATG-GC-TA----CTGG---CAGCAA--ACCTGTAA
110 GTACCAG-CACCCA--TC-G-CACATCATGTGCGCACACCCCCCGGCCCCCCCAATCACC-G--G
* * ** ** ** ** * * *
2027946 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-TTTGAG-G-TTTTATGAGAGATAGGAG-GCC-
167 AA-CCCCAATGC-C-----GCCGGTCAG-GTTCTCCG-GCGATGCTCTGAG-GAT-GGTGCCCCG
* * ** * * * * ** * * *** **
2028006 ----AATATAAGGGCCAAGTACCAGCAC--CCATC--GCACATTATGTGCGCGCACCACCCCCGA
221 GGTGAAAAAAAATG-C-GGCACCAGCACATGC-TCGAGCCCAGCATGTGCACCCGTAACCCTTG-
** * *** * * * * * * *
2028063 CCCCCAAATC-G-TC--AGAAC-CCCAATG-CCGTCGGCCAGGTTCTCTGACGATGATGGCCCGG
282 -GTCCAGATCTGATCTTAG-ACTGGGAATGAAC-TCTG-TA--TGC-CT-AAG-TCA--ACCC--
* * ** *** ** * * * * * * ***
2028122 GCAAAAAAAAATATGAC-ACCAGCACATGCTCGAGCCCAGCATGTGCA--CT-CACAA-CCCTTG
334 AC-GAAACGAGCGTG-CGGGC-GCTCA-G-TCG-G-CCAG-AGGGGCAGGATGCGCAAGTCGGGG
* * *** ** ** * * *
2028182 ATCCGTTCTGATCTTAGACTGGGAATGAACT-CCGTATGCCTAAGTCAACCCACGAAACGAGCGT
391 AT-CG-TCGGGTC--CCCCTCAGCGTG--CTGCCG-AT-CCT--G-C-A-GC-CGCAAC---CCT
* * * ** * ** ** **
2028246 GCGGGCGCTCAG-TCGGCCAGAGGGGTAGG-ATGCGCAAGCTGGGGT-TCGGCC-GGGTCCCCCT
439 -CGGTCGGTCTGATC--TTAGA---CTAGGAAT--G-AA-CT-CCGTAT--GCCTAAG-CCAAC-
* * * * * *** *** * * * * * *
2028307 CGGTATGCTACCGATCCTGCTGCCACAACCCTCAATACGGTCTGATCTTAGACTAGGAATGAACT
489 C-G-ACG-AAACGA----GCGGGC-GGGCGGGCACTAC-G-CCG-GC-CAGA-GAGGCA-G----
* *** * * * *** * *
2028372 CCGTATGC-CTACGCCAACCGA-CGAAATGAGCG-GGCAGGCAGGCACTACGC-CGA-C--CAGA
536 --G-ATGCGC-AAGCC-GTGGATCG--AT-AGGGTGGTAGG-TGGGTTTAGGCAC-ATCTTCATA
*** ** * * * **** *
2028430 GAGGC-GGGATGCGCAAGTTGTGGATCGATAGGTTGGTAGGTGGGTT-TAGGCGCATCTTCATAT
591 -TTTCTGCCATGC-CAA----T-G--CCAT---TT-TTA--TGGCTTGTAAATTCA--TACA-AT
* * * * * * * * **
2028493 -TTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA-ATTCAT-ACAATGGTC-CCTTAAGCCTT
638 GGTC--CC-T--TAA-GCC---TTCAT-G--TG-AAGTTTCATGGCAA--GACGAC-T-CGTTTT
* **** ** *** *
2028554 C-ATGTGAAGTTTCATGGCA-AGACGACTCTTTTTCTATTTTTC-ATGATTTTTGAAACTTTTTT
686 CTAT-T----TTTCA-CG-ATTTTTGAAAC-TTTT-TACGGTTCGA-GA-TTTT-----TTTA--
* *
2028616 CGGTTCGAGATTTTTTTAAAATTTTTTCAGAATGAGTTTTGGGCCCAAACTTGGTAGACGTGATC
733 ------------------AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * * *
2028681 CTTGTATTTTTGTTGGCTTTCACAAAAAAATTCAACTAAAAACTCAAAGTGTACAGGATTTTGTG
780 CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGGATTTTGTG
*
2028746 ACAATTTG-AAAAAGTG-CCCCGATTTC
845 ACCATTTGAAAAAAGTGTCCCC-ATTTC
* *
2028772 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGAGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
2028837 TACTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGACAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
2028902 CATGTGCGCACACCCACCCCG-CCCCCCAATCATCGGAACACCAATGCCGTCGGTCAGGTTCT-C
131 CATGTGCGCACACCC-CCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * *
2028965 --CG--G--C----GATGGTGCCCTGGGCG-AAAAAAATGCGACACCAGCACATGCCCGAGCCTA
195 GGCGATGCTCTGAGGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCA
2029019 GCATGTGCACCCGTAACCCTCTATCCGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCTTAG
260 GCATGTGCACCCGTAA-CC-CT-T---G---G-TC-----CA--G-AT---CT--G-AT-CTTAG
* * * * * * * * * *
2029084 ACTGGGAATGAATTCCGTATGCCAAAGTTAACTCACGAAACGAGTGTGCGGGCACTTAGCCGCCC
300 ACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
* * * ** * *
2029149 GGAGGGGCAGTATGCGCAAGCCACGGATCGGTCGGGTCCCCCTCAGC-TGCTACCAATCCTGCTA
365 AGAGGGGCAGGATGCGCAAGTCGGGGATC-GTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGC-A
* * ** * * *
2029213 TG--GCAACCCTCAGTTTGGTCCAAACTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
428 -GCCGCAACCCTC-GGTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
2029276 ACGAAACGAGCGGGCGGGCAGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGG
491 ACGAAACGAGCGGGCGGGC--G--GGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGG
* *
2029341 ATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGGCAATGCCATTTTTA
552 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTA
* * *
2029406 TGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTTATGTGAAGTTTCATGGCAAGACGACTTG
617 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCG
* *
2029471 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTC-AGGATTTTTTAAAAATTTTTTCAGA
682 TTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAGA
* ***
2029535 ATGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGGGTAAAAAAC
746 A-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-
* *
2029599 ATTCAGCTGAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
809 ATTCAGCTAAAAACTCGAAGTATACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
2029662 AGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGTGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
2029727 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAAATAGGGCCAAGTACCAGCACCCATCGCACA
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACA
* ** * *
2029792 TCATGTGCGTACA-CCCCC-AACCCCCCAATCGCCGGAACCCCAATGCCACCGGTCAGG-T-T--
130 TCATGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** * * * * *
2029851 ---G-T-C-C-GACGATGGCACCCCAGGCGAAAAAAAATTCGGCACCAGCACATGCCCTAGCCCA
195 GGCGATGCTCTGAGGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCA
* * ** * **
2029909 GCATGTGCACCAGCAACCCTTGGTCCATTTC-GATATTAGACTGGGAATGAACTCCATATGCCTA
260 GCATGTGCACCCGTAACCCTTGGTCCAGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTA
* * * *
2029973 AGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGA-GGGCTAGGATACGCAAGCCGG
325 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGC-AGGATGCGCAAGTCGG
* *
2030037 GGATCGTCCGGGTCCCCCTTCAGCGTGCTGTCGATCCTGCTA-CCGCAACCCTCTGTCCGGTCTG
389 GGATCGT-CGGGTCCCCC-TCAGCGTGCTGCCGATCCTGC-AGCCGCAACCCTCGGT-CGGTCTG
* * * **
2030101 ATCTTAGACTGGGAATGAACTTCTTATGCCTAAGCCAACCGATTAAACGAGCGGGCGGGCGGGTG
450 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-----
* *** *
2030166 GGTGGGCACCACGCCAATCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
510 ---GGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
2030231 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAA
572 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
2030296 TGGTCCCTTAATG-TTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
637 TGGTCCCTTAA-GCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * *** *
2030360 TTTGAAACTTTTT-GGGCTTTGGGATTTTTTTTTAAATTTTTTCAGAA-TTTTTTTCGCCCCAAA
701 TTTGAAACTTTTTACGG-TTCGAGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* *
2030423 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
764 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* *
2030488 TGTAAAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
829 TATACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
2030531 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
2030596 TTCTGGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** *
2030661 CATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCG
131 CATGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
2030726 GTGATGCTCTG-GCAATGGTGCCCCGGG-GGAAAAAAATGTGACACCAGCACATGCTCGAGCCCA
196 GCGATGCTCTGAG-GATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCA
* * * * * *
2030789 GCACGTGCACCCGTAACCCTCGGT-CTGGTCCGATCTTAGACTGGGAAGGAACTCTGTATGCCTA
260 GCATGTGCACCCGTAACCCTTGGTCCAGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTA
* * * *
2030853 AGTCAACCCACGAAACGAGCCTGCGGGCACTCAGTCGGCCAGAGGGGTAGGATGCGCAAGTAGGG
325 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGTCGGG
* * * * * * ** *
2030918 GATCAGTCGGGTCCCCTTCAGTGTGCTGCTGATCCTGCTGCAGCCACCCTCAATTCAGTCT-ATT
390 GATC-GTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCAGCCGCAACCCTC-GGTCGGTCTGA-T
* * * * *
2030982 CTTAGAC-AGGTAATGAACTCCGTCTGGCTAAGCTAACCGACAAAACGAGCAGGCGGGCGGGCAC
452 CTTAGACTAGG-AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAC
* ** * * * * ** *
2031046 TACTCAAGCTAGAGAGGCGGGATGCGTAAGCCGTGGATCGATAAGGTCATAGGTGGGTTT-TGCA
516 TACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC-
*
2031110 ACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
580 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
2031175 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACT
645 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* * ** * *
2031240 TTATACGGTTCGAGATTGTTTCCAGATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACA
710 TTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
2031305 AGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGATT
775 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGGATT
2031370 TTGTGACC-TGTTGAAAAAAGTGTCCCCATTTC
840 TTGTGACCAT-TTGAAAAAAGTGTCCCCATTTC
* * *
2031402 AAACATTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* **
2031467 TTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** * * *
2031532 CATGTGCGCACACCCCTCGGCCCCCCCAATCACCGGAACCCTAATATCGTCGATCAGGTTCTCCA
131 CATGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * * ** * * * *
2031597 GTGACGCTCCGACGATGGTGCCCCGGGCGAAAAAAAATGCAACACAACCATATGCCCGAGCCCAG
196 GCGATGCTCTGAGGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
* * * * *
2031662 CATGTGCACCCGTAACCCTCGGT-CTGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAA
261 CATGTGCACCCGTAACCCTTGGTCCAGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAA
* * * * * *
2031726 GTCAACCCATGAAATGAGCGTACGGGCGCTCAG-CAGGCCAGAGGGACAGGATGCGCAAGCCAGG
326 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GGCCAGAGGGGCAGGATGCGCAAGTCGGG
* * * **
2031790 GTTCGACCGGGTCCCCCTCAGCGTGCTGTCGATCCTGCAAACGCAACCCTCGGTCTGGTCTGATC
390 GATCG-TCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCAGCCGCAACCCTCGGTC-GGTCTGATC
* * * * * * *
2031855 TTAGA-TAGGGAATGAACTCCATGTGGCTAAGCCAACCAATGAAATGAACGGGTGGGCGGGCGGG
453 TTAGACTA-GGAATGAACTCCGTATGCCTAAGCCAACCGACG--A--AACGAGCGGGCGGGCGGG
* *
2031919 CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
513 CACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
2031984 GCACATCTTAATATTTCAGCCAAGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCC
578 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
2032049 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
643 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
2032114 CTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCAGATGGAGTTTTGGCCACAAACTTGGTAGA
708 CTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
2032179 TGTGATCCTTGTATTTTT-TTTGCATACACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAGGA
773 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGGA
2032243 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
838 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
2032277 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
2032342 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCACACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * *
2032407 CATGTGCGCACACCCCCTCCATCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTC
131 CATGTGCGCACA-CCCC-CCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTC
*** * * * * * *
2032472 CAATGATGCTAC-GACGATGGTGCCCTGGGCGAAAAAAAATGTGGCACCAACACATGCCCGAGCC
194 CGGCGATGCT-CTGAGGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCC
* * **
2032536 TAGCATGTGCAACCGCAGCCCTCAGTCTGATCTGATCTTAGGCTGGGAATGAACTCTGTATGCTT
258 CAGCATGTGC-ACC-C-G---T-A-----A-C---CCTT-GG-T--CCA-G-A-TCTG-AT-CTT
* * * *
2032601 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGG
298 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGG
* * * * * * *
2032666 CCAAAGGGGCAGGATGCGTAAGCCAGGGATAGGTCGGGTCCCCCTCAGCGTGCTGCAGATCATGC
363 CCAGAGGGGCAGGATGCGCAAGTCGGGGAT-CGTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGC
* * * * * *
2032731 TGCCACAACCCTCAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCG
427 AGCCGCAACCCTCGGT-CGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * *
2032796 ACGAAACGAGAGGGCGGGCGGGCCGGCACTATGCAGGCTAGAGAGGC-GGAATGCGCAAGCCATG
491 ACGAAAC--GA--GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCAGG-ATGCGCAAGCCGTG
* * * * *
2032860 GATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATCTCT-ACTTAGCCAATGCCTTTTT
551 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT-GCCAATGCCATTTT
* *
2032924 TATGGCTTGTAAATTCATACAATGGTCCCTTTAGCCTTCATGTGAAGTTTCATGGCAAGACGACA
615 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
2032989 CGTTTTCTATATTTTTCACGATTTTTGAAACGTTTTT-CGGTTCTG-GATTTTTTT-AAATTTTT
680 CGTTTTC--TATTTTTCACGATTTTTGAAAC-TTTTTACGGTTC-GAGATTTTTTTAAAATTTTT
* * * * * * *
2033051 TCA-AGAGGATTTTTGGGCCCAAACTTAGTAGACGTGATTCTTCTATTTTTATGGGCATGCACAA
741 TCAGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * * * * * *
2033115 AAAAAATCAGTTAAAAAATTGAAGTGTATAGGATTTTGTGACTAATTGAAAAAAGTGTCCCCATT
805 AAAAATTCAGCTAAAAACTCGAAGTATACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
2033180 TT
870 TC
* *
2033182 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTATGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
2033247 TTCTTGAGGTTTGATGAAGGATAGGGGGCCAATATAATGGCCAACTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** *
2033312 CTTGTGCGCACACCCCCCTGGCCCCCTCAATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCC
131 CATGTGCGCACACCCCCC-GGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
2033377 GACGATGCTCAG-GCGATGGTGCCTCGAGCGAAAAAAAATGCGGC-CCAG--CATG-T-GCACCC
195 GGCGATGCTCTGAG-GATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCG-AGCC
* * * *** * *
2033436 TCAACCT-T-CGATCCAGT--CCGATCTTAGAATGGGAATGAACTTCGTATTCTTAGACTGGAAA
258 -CAGCATGTGC-A-CCCGTAACC---CTT-G---GTCCA-GATC-T-G-A-TCTTAGACTGGGAA
* * * * * * *
2033497 TGAACTCCT-TATGCCTAAGTCAACCCACGGAATGAGCGTACTGGCGCTCAGGCAGCCATAGGGG
308 TGAACT-CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGG
* * * * * * *
2033561 CAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTTTAGCGTGCTACCGATCCTGCTGCTGCATC
372 CAGGATGCGCAAGTCGGGGATCG-TCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCAGCCGCAAC
* * *
2033626 CCTCAGTCTGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
436 CCTCGGTC-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
2033691 GCGGGCGGGCAGGCAAGCATTATGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
500 GCGGGCGGGC-GG---GCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGG
* *
2033756 GTGGTAGGTGGGTTTAGGCACATCGTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTA
561 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
* * * *
2033821 AATTGATACAACT-GTCCCTTAAGCTTTCATGTGAAGTTTCATGGCAAGATGACTC-TTTTTTAT
626 AATTCATACAA-TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * * * * *
2033884 TTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTCGGAGGGATTTTT
690 TTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
* * * *
2033949 GGCCCCAAACTTGGTAGACGTGATCCTGGTATTTTTATTGGCATGCAAAAAAAAAATTTAGCTAA
755 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAA
* * * *
2034014 AAATTAGAAGTGTACAGGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTC
819 AAACTCGAAGTATACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
2034067 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
2034132 TTCTTGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** * *
2034197 CATGTGCGCATA-CCCCCGGCCCCCCAAATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCA
131 CATGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * * *
2034261 ATGATGCT-TCGACGATGGTGCCCCGGGTG-AAAAAAATGTGGCACCAGCACATGCCCGAGCCCT
196 GCGATGCTCT-GAGGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCA
* * * *
2034324 GCATGTGCACCTGTAACCCTCGGT-CTGATCTGATCTTAGACTGGCAATGAACT-TCGTATGCCT
260 GCATGTGCACCCGTAACCCTTGGTCCAGATCTGATCTTAGACTGGGAATGAACTCT-GTATGCCT
* * *
2034387 AAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGTCGG
324 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGTCGG
* * * *
2034452 GGATCGGTTGGGTCCCGCTCA--GTG-T---G---CT---GCCGCAACCCTCGGTCCTGTTTGAT
389 GGATC-GTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCAGCCGCAACCCTCGGT-CGGTCTGAT
* ** * *
2034505 CTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAAATGAGCGGACGGGCAGGCGGG
452 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGGCGGGCGGG
* * *
2034570 CACTACGTCGGCCAGAGAGGCGGGATGCGGAAGCCGTGGATCGAT-GGGTGGTAGGTGGGTTTAG
513 CACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
2034634 GCACATCATCATATTTCTACCATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
578 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
2034699 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
643 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
2034764 CTTTTTACGATTCGAGATTTTTTCAAAATTTTTTC---AGGAGTTTTGGCCCAAAACTTGGTGGA
708 CTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
2034826 CGTGATCCTTGCAGTTTTGTTGGCATGCA-AAAATAAATTCAGCTAAAAACTCGAAGTGTACAGG
773 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTATACAGG
* *
2034890 GTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
837 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
2034925 AGACGCTTTAATGGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGGGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* ** * *
2034990 TTCTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAACACCACCACCCATCGTACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * * *
2035055 CATGTGCGCACA-CCCCCAGCCCCCCC-ATCGTCGGATCCCCAATGTCGCCGATCAGGTTCT-C-
131 CATGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
2035116 -CGA-----T---GATGGTGCCCCGGG-GAAAAAAAATACGACACCAGCACATGCCCGAGCCCAG
196 GCGATGCTCTGAGGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
* * * * * *
2035171 CATGTGCACCC-TCAACCCTCGGTCC-GGTTTGATCTTAGACTGGAAATGAACTCCGTATCCCTA
261 CATGTGCACCCGT-AACCCTTGGTCCAGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTA
* * * * * *
2035234 AGTCAACCCACAAAATGAGCGTGCGGGCGCTCCGTCGGCCAGAGGGGCAGGATACGTAAGCCGGG
325 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGTCGGG
* * ** * ** * * * **
2035299 GATCGGCCAGGTCCCCCTCAGCACGCTGCCAATCCTGCTA-TTGCACCCCTGGGTCTAGTCCAAT
390 GATC-GTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGC-AGCCGCAACCCTCGGTC-GGTCTGAT
* * * *
2035363 CTTAGACTGGGAATGAACTCCGAATACCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCAGG
452 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G--GG
* * * * *
2035428 CACTACGTCGACCAGAGAGGCGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAG
513 CACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
2035493 GCACATCTTCATATTTTTGCCATGCCAATGCAAATTTTATGGCTTGTAAATTCATACAATGGTCC
578 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
2035558 CTTAAGCCTTCATGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
643 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* *
2035623 CTTTTTACGGTTGGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAACCTTGGTAGA
708 CTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
2035688 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTGGAAGTGTACAGGA
773 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGGA
2035753 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
838 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
2035787 AGACACTTTAATGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * **
2035852 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATTACACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** *
2035917 CATGTGTGCACACCCCCTCCGG-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-
131 CATGTGCGCACA-CCCC-CCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
2035980 C--CGA----C----GATGGTGCCCTGGG-CAAAAACAATGCGGCACCAGCACATGCCCGAGCCC
194 CGGCGATGCTCTGAGGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCC
* * * * *
2036034 AACATGTGCACCCGCAA-CCTTCAGTCC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
259 AGCATGTGCACCCGTAACCCTT-GGTCCAGATCTGATCTTAGACTGGGAATGAACTCTGTATGCC
* * * * * * * *
2036097 AAAGTCAACACACAAAACGAGCGTGCGGCCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCC
323 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGTCG
* * * * **
2036162 GGGATCGATCGGGTCCCCCTCAACGTGCTACCGATCCTGCTA-CCACAAACCTCGGTCTGGTCCA
388 GGGATCG-TCGGGTCCCCCTCAGCGTGCTGCCGATCCTGC-AGCCGCAACCCTCGGTC-GGTCTG
* *
2036226 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
450 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCA
* * * *
2036291 CTACGCCAGCCAGAGAGGCGGGATGCACAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGC
515 CTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
2036356 ACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGGTCCCT
580 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
2036421 TAAGCCTTCATGTGAACTTTCATGGCAAGACGACTCGTTTTCTATGTTTC-CTAATTTTTGAAAC
645 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-GATTTTTGAAAC
* * *
2036485 TTTTTTCGGTTCGAGATTTTTTT-TAATTTTTCCAGAA-GAGTTTTGGCCCCAAACTTGGTAGAC
709 TTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * ** * * * * *
2036548 GTCATCCATGTATTTTTGCGGGCATGCACAAAAACATTCAACTAAAAACTCGTAGTGTATAGGAT
774 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGGAT
*
2036613 TTTGTGACCATTTGAAAAAAGTGTTCCCATTTC
839 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* ** * *
2036646 AGACACTTTAGTGGCTACTGGCAATAAACCTGTAAAATCTCAAATGCTGTTTAAGGAGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
2036711 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * * ** * * *
2036776 CATAAGCGTACACCCCCCCGACCCCCCAATCGTCGGAATCCCAATGCCGTCAGTCAGGTTCTCCG
131 CATGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* *** * * * *
2036841 ACGATGCTCTGATGATGATGTTCTGGTGATGGTGCCCCGTACGAAAAATAATGTGGCACCAACAT
196 GCGATGCTC------TGA-------G-GATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCAC
* *** * * * *
2036906 ATGCTCGAGCCTAGCATGTGCACCCGTAACCCCCAGTCC-GGTCCGATCTTAGTCTGTGAATGAA
247 ATGCTCGAGCCCAGCATGTGCACCCGTAACCCTTGGTCCAGATCTGATCTTAGACTGGGAATGAA
** * * * * * *
2036970 CTCCATATGCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC-TCCGTATGC-C
312 CTCTGTATGCCTA-A----G--TCAAC-CC--A--C---GA-----AACGAGCGTGCG--GGCGC
* ** * * * * * * *
2037033 TAAGTCAACCCATGAAACGAGCGTG-TGGGTGCTCAACCGACCAGAGGA-C-TAGGATGCGCAAG
355 TCAGTC-GGCCA-G--A-G-G-G-GCAGGATGCGCAA--G-TC-GGGGATCGTCGGGT-C-C---
* * * * * *
2037095 CCAGGGATTGGCTGGGTCCCCTCAGCGTCCTTCCGATCCTGCTA-CCACAACCCTCGGTCTTGTC
403 CC-----CT--C-A----------GCGTGCTGCCGATCCTGC-AGCCGCAACCCTCGGTC-GGTC
* * ** *
2037159 TGATCGTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAAAAGTGGGCGGGCGGG
448 TGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* *** *
2037224 CAGGCCCTACGTCGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGT
513 CA----CTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
2037289 TTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
574 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
2037354 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCACGATTTTT
639 GTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** *
2037419 GAAACTTTTTACAGTTC-AGGATTTTTTTAAAATTTTTTC-GAAAATATTTTTGGCCCCAAACTT
704 GAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTT
*
2037482 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
767 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTAT
*
2037547 ACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
832 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
2037587 AGACACTTTAATGGCTACTG
1 AGACACTTTAATGGCTACTG
2037607 TAGACACCCA
Statistics
Matches: 11434, Mismatches: 2028, Indels: 1754
0.75 0.13 0.12
Matches are distributed among these distances:
845 2 0.00
846 171 0.01
847 1 0.00
848 1 0.00
849 1 0.00
850 1 0.00
854 10 0.00
855 3 0.00
856 2 0.00
857 38 0.00
858 345 0.03
859 462 0.04
860 14 0.00
861 318 0.03
862 396 0.03
863 12 0.00
864 103 0.01
865 305 0.03
866 255 0.02
867 6 0.00
868 45 0.00
869 268 0.02
870 305 0.03
871 699 0.06
872 515 0.05
873 469 0.04
874 109 0.01
875 526 0.05
876 606 0.05
877 110 0.01
878 12 0.00
879 93 0.01
880 154 0.01
881 292 0.03
882 43 0.00
883 122 0.01
884 152 0.01
885 218 0.02
886 346 0.03
887 13 0.00
888 79 0.01
889 109 0.01
890 434 0.04
891 61 0.01
892 7 0.00
893 3 0.00
894 40 0.00
895 144 0.01
896 9 0.00
897 5 0.00
898 3 0.00
899 10 0.00
900 383 0.03
901 164 0.01
902 6 0.00
903 342 0.03
904 143 0.01
905 241 0.02
906 6 0.00
908 3 0.00
909 4 0.00
910 1 0.00
911 14 0.00
912 11 0.00
913 10 0.00
914 13 0.00
915 8 0.00
916 3 0.00
917 12 0.00
918 6 0.00
919 3 0.00
921 10 0.00
922 9 0.00
923 8 0.00
924 5 0.00
925 1 0.00
926 11 0.00
929 2 0.00
930 2 0.00
932 1 0.00
933 5 0.00
934 6 0.00
935 102 0.01
936 5 0.00
937 4 0.00
938 7 0.00
939 199 0.02
940 11 0.00
941 131 0.01
942 5 0.00
943 3 0.00
944 4 0.00
945 4 0.00
946 9 0.00
947 18 0.00
948 10 0.00
949 8 0.00
950 19 0.00
951 5 0.00
952 5 0.00
953 6 0.00
954 7 0.00
955 2 0.00
956 6 0.00
957 19 0.00
958 17 0.00
959 54 0.00
960 16 0.00
961 4 0.00
962 4 0.00
963 9 0.00
964 9 0.00
965 9 0.00
966 21 0.00
967 7 0.00
968 14 0.00
969 13 0.00
970 6 0.00
971 10 0.00
972 9 0.00
973 17 0.00
974 24 0.00
975 10 0.00
976 26 0.00
977 70 0.01
978 13 0.00
979 15 0.00
980 25 0.00
981 12 0.00
982 9 0.00
983 18 0.00
984 10 0.00
985 20 0.00
986 6 0.00
987 14 0.00
988 10 0.00
989 11 0.00
990 8 0.00
991 10 0.00
992 25 0.00
993 25 0.00
994 21 0.00
995 17 0.00
996 18 0.00
997 4 0.00
998 18 0.00
999 29 0.00
1000 18 0.00
1001 23 0.00
1002 13 0.00
1003 11 0.00
1004 4 0.00
1005 16 0.00
1006 31 0.00
1007 12 0.00
1008 1 0.00
1009 4 0.00
1010 1 0.00
1011 10 0.00
1012 7 0.00
1013 5 0.00
1014 7 0.00
1015 15 0.00
1016 3 0.00
1017 6 0.00
1018 19 0.00
1019 3 0.00
1020 5 0.00
1021 12 0.00
1023 4 0.00
1024 29 0.00
1025 31 0.00
1026 49 0.00
1027 38 0.00
1028 26 0.00
1029 46 0.00
1030 163 0.01
1031 50 0.00
1032 58 0.01
1033 144 0.01
1034 65 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (871 bp):
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCGGCCCCCCCAATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
GCGATGCTCTGAGGATGGTGCCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
CATGTGCACCCGTAACCCTTGGTCCAGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAA
GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGTCGGGG
ATCGTCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCAGCCGCAACCCTCGGTCGGTCTGATCTTA
GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGC
CGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
GGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTC
Found at i:2025320 original size:26 final size:26
Alignment explanation
Indices: 2025284--2025336 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
2025274 CTAGTTCGAT
*
2025284 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2025310 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2025336 C
1 C
2025337 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2029082 original size:26 final size:26
Alignment explanation
Indices: 2029053--2029105 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2029043 CCGGTCTGAT
2029053 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
* *
2029079 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
2029105 C
1 C
2029106 CAAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:2032601 original size:26 final size:26
Alignment explanation
Indices: 2032572--2032624 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2032562 CTGATCTGAT
* *
2032572 CTTAGGCTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2032598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
2032624 C
1 C
2032625 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:2034757 original size:862 final size:859
Alignment explanation
Indices: 2026906--2037606 Score: 11432
Period size: 862 Copynumber: 12.2 Consensus size: 859
2026896 CCCACCCCTC
* * * * *
2026906 TGGCCCCAAACATGCTAGATGTGATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTTC-GCTA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATTCAGCTA
* * * * *
2026970 AAAATTTGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCATACATTTTAA
65 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
2027035 TGGCTACTGGCAGCAAATCTGTAAAATCTGAAATGCTTTTTAAGCGGGTGTGAGTTCTCGAGGTT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
2027100 TGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGTAA
195 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** * *
2027165 ACCCCC--CACCCCCTGTCATCGGAACCCCAATGCCGTCGGTCAAGTTCT-C---TG--G-CGAT
260 ACCCCCGGC-CCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGATGCCGACGAT
* * * *
2027221 GGCGCCCCGGGCAAAAAAAAATGCGGCACCAACACATGCCCGAGCCCAGTATGTGCACCCT-TAA
324 GGTGCCCCGGGC-GAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CCTGTAA
** *
2027285 CCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACGGGGAATGAATTTC
387 CCCTCGGTCTGATCTGATCTTAGACTGGGAATGAA---C---T-C-----C-------G----T-
* *
2027350 GGATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCTGCCAGAGGGACAGGATGCG
428 --ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG
* * * * *
2027415 CAAGCTGGGGATCAG-CTGGGTCCCCTTTTGCGTGCA-GCCGGTCCTAATGCCACAACCCTCAGT
491 CAAGCCGGGGATCGGTC-GGGTCCCC-----C-T-CACG-CTGTGC---TGCCGCAACCCTCAGT
* * * * *
2027478 CTGGT-TAAATTTTAGACTAGGAATGAAATCCGTATGCCAAAGCCAACCGACGAAACGAGCGGGC
544 CTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* *
2027542 AGGCGGGCAGGCACTACG-CGACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
608 GGGCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
2027606 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
673 GGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
2027671 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
738 TACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* *
2027736 GATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTTAAAATTTTTTCAGAAAGG-GTTT
803 GATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTTTAAAATTTTTTCAG-AGGGAGTTT
* *
2027794 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAATTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
2027858 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
66 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
2027923 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
2027988 TATGAGAGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCGCA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCGCA
* * * * *
2028053 CCACCCCCGACCCCCAAATCGTCAGAACCCCAATGCCGTCGGCCAGGTTCT-CTGA---CGATGA
259 -CACCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGATGCCGACGA
* ** * * **
2028114 T-G-G-CCCGGGCAAAAAAAAATATGACACCAGCACATGCTCGAGCCCAGCATGTGCA-CTCACA
323 TGGTGCCCCGGGC-GAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCT-GTA
* * * *
2028175 ACCCTTGATCCGTTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
386 ACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * *
2028240 GAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGTAGGATGCGCAAGCTGGGGTTCGGCCGGGTCCCC
451 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* * * *
2028305 CTCGGTATGCTACCGATCCTGCTGCCACAACCCTCAATAC-GGTCTGATCTTAGACTAGGAATGA
516 CTC---ACGCT---G----TGCTGCCGCAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGA
* * * * *
2028369 ACTCCGTATGCCTACGCCAACCGACGAAATGA----GCGGGCAGGCAGGCACTACGCCGACCAGA
570 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGA
** * *
2028430 GAGGCGGGATGCGCAAGTTGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCGCATCTTCATATTT
635 GAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
2028495 CTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
700 CTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
* * *
2028560 AAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGAG
765 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG
**
2028625 ATTTTTTTAAAATTTTTTCAGAATGAGTTT
830 ATTTTTTTAAAATTTTTTCAGAGGGAGTTT
* * * * *
2028655 TGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTTCACAAAAAAATTCAACTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
* *
2028720 AAACTCAAAGTGTACAGGATTTTGTGACAATTTG-AAAAAGTG-CCCCGATTTCAGACACTTTAA
66 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAA
* * *
2028783 TGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGAGGGTGTGAGTACTCGAGGTT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
2028848 TGATGAGGGATAGGGGCCCAATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCAC
195 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
2028913 ACCCACCCCGCCCCCCAATCATCGGAACACCAATGCCGTCGGTCAGGTTCTCC----G--G-CGA
260 A-CC-CCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGATGCCGACGA
* * * *
2028971 TGGTGCCCTGGGCGAAAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCACCCGTAAC
323 TGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGTAA-
*
2029036 CCTCTATCCGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCG
387 CC-C--T-C-G---G-TC-T-------G-AT---CT--G-AT-CTTAGACTGGGAATGAACTCCG
* * * * * * * * *
2029101 TATGCCAAAGTTAACTCACGAAACGAGTGTGCGGGCACTTAGCCGCCCGGAGGGGCAGTATGCGC
427 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGC
** * * * *
2029166 AAGCCACGGATCGGTCGGGTCCCCCTCAGCTGCTACCAATCCTGCTATGGCAACCCTCAGTTTGG
492 AAGCCGGGGATCGGTCGGGTCCCCCTCA-C-GCT----GTGCTGC---CGCAACCCTCAGTCTGG
** * * *
2029231 TCCAAACTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCA
548 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
* * *
2029296 GGCAGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTTGGTGG
613 GGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
2029361 GTTTAGGCACATCTTCATATTTCTGCCATGGCAATGCCATTTTTATGGCTTGTAAATTCATACAA
678 GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
2029426 TGGTCCCTTAACCCTTTATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTT
743 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
2029491 TTAAAACTTTTTACGGTTC-AGGATTTTTTAAAAATTTTTTCAGAATGG-GTTT
808 TTGAAACTTTTTACGGTTCGA-GATTTTTTTAAAATTTTTTCAG-AGGGAGTTT
* ** * *
2029543 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGGGTAAAAAACATTCAGCTG
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-GCAAAAAAAAATTCAGCTA
2029608 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
65 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
2029673 TTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGATCTTTAAGTGGGTGTGAGTTCTCAAGGTT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
2029738 TGATGAGGGATAGGGGGCCAATAAATAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTA
195 TGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
** * **
2029803 CACCCCCAACCCCCCAATCGCCGGAACCCCAATGCCACCGGTCAGG---T--TG-T-CCGACGAT
259 CACCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGATGCCGACGAT
** * * * * *
2029861 GGCACCCCAGGCGAAAAAAAATTCGGCACCAGCACATGCCCTAGCCCAGCATGTGCACCAGCAAC
324 GGTGCCCCGGGCG-AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGTAAC
* * * * *
2029926 CCTTGGTC-CATTTCGATATTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACG
388 CCTCGGTCTGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* *
2029990 AGCGTGCGGGCGCTTAGCCGGCCAGA-GGGCTAGGATACGCAAGCCGGGGATC-GTCCGGGTCCC
452 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC-AGGATGCGCAAGCCGGGGATCGGT-CGGGTCCC
* *
2030053 CCTTCAGCGTGCTGTCGATCCTGCTACCGCAACCCTCTGTCCGGTCTGATCTTAGACTGGGAATG
515 CC-TCA-C--GCTGT-G---CTG---CCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATG
* * ** ** * * **
2030118 AACTTCTTATGCCTAAGCCAACCGATTAAACGAGCGGGCGGGCGGGTGGGTGGGCACCACGCCAA
569 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC----GGGCAGGCACTACGTCGG
*
2030183 TCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
630 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
2030248 TATTTCTGCCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATG-TTT
695 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-GCCTT
*
2030312 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-GGG
759 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * ****
2030376 CTTTGGGATTTTTTTTTAAATTTTTTCAGA-ATTTTTT
824 -TTCGAGA-TTTTTTTAAAATTTTTTCAGAGGGAGTTT
* * *
2030413 TCGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
* * *
2030478 AAACTCAAAGTGTAAAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
66 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
2030543 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTGGAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
2030608 GATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
2030673 CCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGATGCTCTGG
261 -CCCCCGG-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC--TGATGC-C-GA
* * * * * * *
2030738 CAATGGTGCCCCGGGGGAAAAAAATGTGACACCAGCACATGCTCGAGCCCAGCACGTGCACCCGT
320 CGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGT
* * * *
2030803 AACCCTCGGTCTGGTCCGATCTTAGACTGGGAAGGAACTCTGTATGCCTAAGTCAACCCACGAAA
385 AACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * ** *
2030868 CGAGCCTGCGGGCACTCAGTCGGCCAGAGGGGTAGGATGCGCAAGTAGGGGATCAGTCGGGTCCC
450 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * * * * * *
2030933 CTTCAGTGTGCTGCTGATCCTGCTGCAGCCACCCTCAAT-TCAGTCT-ATTCTTAGACAGGTAAT
515 CCTCA-----C-GCTG----TGCTGCCGCAACCCTCAGTCT-GGTCTGA-TCTTAGACTGGGAAT
* * * * * * *
2030996 GAACTCCGTCTGGCTAAGCTAACCGACAAAACGAGCAGGCGGGC--G--GGCACTAC-TCAAGCT
568 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGTC-GGCC
* * ** *
2031056 AGAGAGGCGGGATGCGTAAGCCGTGGATCGATAAGGTCATAGGTGGGTTT-TGCAACATCTTCAT
632 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC-ACATCTTCAT
*
2031120 ATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
696 ATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * *
2031185 TGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTATACGGTT
761 TGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTT
* ** * *
2031250 CGAGATTGTTTCCAGATTTTTTCAGAAGGAGTTT
826 CGAGATTTTTTTAAAATTTTTTCAGAGGGAGTTT
** * *
2031284 TGGCCCCAAACTTGGTAGACAAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
* *
2031349 AAACTCGAAGTGTACAGGATTTTGTGACC-TGTTGAAAAAAGTGTCCCCATTTCAAACATTTTAA
66 AAACTCGAAGTGTACAGGATTTTGTGACCAT-TTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
2031413 TGGCTACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
**
2031478 TGATGAGGGATAGGGGGCCAATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
195 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
** * ** * *
2031543 ACCCCTCGGCCCCCCCAATCACCGGAACCCTAATATCGTCGATCAGGTTCTCCAGTGACGCTCCG
260 ACCCC-CGG-CCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC--TGATG--CCG
** * * * *
2031608 ACGATGGTGCCCCGGGCGAAAAAAAATGCAACACAACCATATGCCCGAGCCCAGCATGTGCACCC
319 ACGATGGTGCCCCGGGCG-AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCT
* * *
2031673 GTAACCCTCGGTCTGGTCTGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
383 GTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * **
2031738 AATGAGCGTACGGGCGCTCAGCAGGCCAGAGGGACAGGATGCGCAAGCCAGGGTTCGACCGGGTC
448 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTC
*
2031803 CCCCTCAGCGTGCTGTCGATCCTGCAAACGCAACCCTCGGTCTGGTCTGATCTTAGA-TAGGGAA
513 CCCCTCA-C--GCTGT-G---CTGC---CGCAACCCTCAGTCTGGTCTGATCTTAGACT-GGGAA
* * * * * * * * *
2031867 TGAACTCCATGTGGCTAAGCCAACCAATGAAATGAACGGGTGGGCGGGCGGGCACTACGTCGGCC
567 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGTCGGCC
*
2031932 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATA
632 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
2031997 TTTCAGCCAAGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
697 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
*
2032062 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTC
762 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* *
2032127 AAGATTTTTTTAAAATTTTTTCAGATGGAGTTT
827 GAGATTTTTTTAAAATTTTTTCAGAGGGAGTTT
* * * * * *
2032160 TGGCCACAAACTTGGTAGATGTGATCCTTGTATTTTT-TTTGCATACACAAAAAAATTTAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
2032224 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
66 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
2032289 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
2032354 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCACACATCATGTGCGCACA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
** *
2032419 CCCCCTCCATCCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAATGATGCTAC
261 --CCC-CC-GGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC--TGATGC--C
* * * *
2032484 GACGATGGTGCCCTGGGCGAAAAAAAATGTGGCACCAACACATGCCCGAGCCTAGCATGTGCAAC
318 GACGATGGTGCCCCGGGCG-AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC-AC
* *
2032549 C-GCAGCCCTCAGTCTGATCTGATCTTAGGCTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
381 CTGTA-ACC-C--TC-G----G----T---C------TG-A-TCTG-AT-CTTAGACTGGGAATG
* * *
2032613 AACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGCCGGCCAAAGGGGCAG
420 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG
* * * *
2032678 GATGCGTAAGCCAGGGATAGGTCGGGTCCCCCTCAGCGTGCTGCAGATCATGCTGCCACAACCCT
485 GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCA-C--GCT---G----TGCTGCCGCAACCCT
** * *
2032743 CAGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGAG
540 CAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * * *
2032808 GGCGGGCGGGCCGGCACTATG-CAGGCTAGAGAGGCGGAATGCGCAAGCCATGGATTGATAGGGT
605 GGCGGGCGGGCAGGCACTACGTC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * *
2032872 GGTAGGTGGGTTTAGGCACATCTTCATATCTCT-ACTTAGCCAATGCCTTTTTTATGGCTTGTAA
669 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAT-GCCAATGCCATTTTTATGGCTTGTAA
* *
2032936 ATTCATACAATGGTCCCTTTAGCCTTCATGTGAAGTTTCATGGCAAGACGACACGTTTTCTATAT
733 ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC--TAT
*
2033001 TTTTCACGATTTTTGAAACGTTTTT-CGGTTCTG-GATTTTTTT-AAATTTTTTCA-AGAGGATT
796 TTTTCACGATTTTTGAAAC-TTTTTACGGTTC-GAGATTTTTTTAAAATTTTTTCAGAG-GGAGT
2033062 TT
858 TT
* * * * * * *
2033064 TGGGCCCAAACTTAGTAGACGTGATTCTTCTATTTTTATGGGCATGCACAAAAAAAA-TCAGTTA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATTCAGCTA
* * * * * *
2033128 AAAAATTGAAGTGTATAGGATTTTGTGACTAATTGAAAAAAGTGTCCCCATTTTAGACACTTTAA
65 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
2033193 TGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTATGGGGGTGTGAGTTCTTGAGGTT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
2033258 TGATGAAGGATAGGGGGCCAATATAATGGCCAACTACCAGCACCCATCGCACATCTTGTGCGCAC
195 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
2033323 ACCCCCCTGGCCCCCTCAATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCA
260 A-CCCCC-GGCCCCC-CAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC--TGATGC-C-
* * * ** * * *
2033388 GGCGATGGTGCCTCGAGCGAAAAAAAATGCGGC-CCAGCATGTGCACCCTCAACCTTCGATCCA-
318 GACGATGGTGCCCCGGGCG-AAAAAAATGCGGCACCAGCACATG--CCC-GAGCC--C-A-GCAT
* * * * ** * * *
2033451 GTCCGATCT-TAGA--ATGGGAATGAACTTCGTATTCTTAGACTGGAAATGAACTCCTTATGCCT
375 GTGC-ACCTGTA-ACCCTCGGTCTGATC-T-G-A-TCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
2033513 AAGTCAACCCACGGAATGAGCGTACTGGCGCTCAGGCAGCCATAGGGGCAGGATGCGCAAGCCGG
434 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGG
* * * * *
2033578 GGATCGATCGGGTCCCCTTTAGCGTGCTACCGATCCTGCTGCTGCATCCCTCAGTCTGGTCTGAT
499 GGATCGGTCGGGTCCCC-----C-T-C-A-CGCT-GTGCTGCCGCAACCCTCAGTCTGGTCTGAT
* * *
2033643 CTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGCAAG
554 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGG
* * * *
2033708 CATTATGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
619 CACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
2033773 GCACATCGTCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAACT-GTC
684 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA-TGGTC
* * * **
2033837 CCTTAAGCTTTCATGTGAAGTTTCATGGCAAGATGACTC-TTTTTTATTTTTCACGATTTTCAAA
748 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
2033901 ACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTCGGAGGGATTTT
813 ACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAGGGAGTTT
* * *
2033948 TGGCCCCAAACTTGGTAGACGTGATCCTGGTATTTTTATTGGCATGCAAAAAAAAAATTTAGCTA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAAATTCAGCTA
* * *
2034013 AAAATTAGAAGTGTACAGGATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAA
65 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
2034078 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTTGAGGTT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * *
2034143 TGATGACGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCGCACATCATGTGCGCAT
195 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
2034208 ACCCCCGGCCCCCCAAATCGTCAGAACCCCAATGCCGCCGGTCAGGTTCTCCAATGATGCTTCGA
260 ACCCCCGGCCCCCC-AATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC--TGATGC--CGA
* * *
2034273 CGATGGTGCCCCGGGTGAAAAAAATGTGGCACCAGCACATGCCCGAGCCCTGCATGTGCACCTGT
320 CGATGGTGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGT
* *
2034338 AACCCTCGGTCTGATCTGATCTTAGACTGGCAATGAACTTCGTATGCCTAAGTCAACCCACGAAA
385 AACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
2034403 CGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGTCGGGGATCGGTTGGGTCCC
450 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * * **
2034468 GCTCA-G-TGTGCTGCCGCAACCCTCGGTCCT-GTTTGATCTTAGACTGGGAATGAACTTTGTAT
515 CCTCACGCTGTGCTGCCGCAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
2034530 GCCTAAGCCAACCGACGAAATGAGCGGACGGGCAGGCGGGCACTACGTCGGCCAGAGAGGCGGGA
579 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGA
* * *
2034595 TGCGGAAGCCGTGGATCGAT-GGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTACCATGC
644 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGC
*
2034659 CGATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
709 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
* *
2034724 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCGAGATTTTTTCA
774 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTA
2034789 AAATTTTTTC--A-GGAGTTT
839 AAATTTTTTCAGAGGGAGTTT
* * * * *
2034807 TGGCCCAAAACTTGGTGGACGTGATCCTTGCAGTTTTGTTGGCATGCAAAAATAAATTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
* * *
2034872 AAACTCGAAGTGTACAGGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACGCTTTAAT
66 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
2034937 GGCTACTGACAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTCGAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* ** * *
2035002 GATTAGGGATAGGGGGCCAATATAAGGGCCAAACACCACCACCCATCGTACATCATGTGCGCACA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * *
2035067 CCCCCAGCCCCCCCATCGTCGGATCCCCAATGTCGCCGATCAGGTTCTCC-GAT------GATGG
261 CCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGATGCCGACGATGG
* * *
2035125 TGCCCCGGG-GAAAAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCACCCT-CAACC
326 TGCCCCGGGCG-AAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA-CCTGTAACC
* * * * * * *
2035188 CTCGGTCCGGTTTGATCTTAGACTGGAAATGAACTCCGTATCCCTAAGTCAACCCACAAAATGAG
389 CTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
2035253 CGTGCGGGCGCTCCGTCGGCCAGAGGGGCAGGATACGTAAGCCGGGGATCGGCCAGGTCCCCCTC
454 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCT-
* * * ** * **
2035318 AGCACGCTGCCAATCCTGCTATTGCACCCCTGGGTCTAGTCCAATCTTAGACTGGGAATGAACTC
518 --CACGCTG----TGCTGC---CGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTC
* * * *
2035383 CGAATACCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCAGGCACTACGTCGACCAGAGAGG
574 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGG
* * *
2035448 CGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGC
639 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
2035513 CATGCCAATGCAAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
704 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* * *
2035578 TTCACGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTGGAGATTT
769 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTT
*
2035643 TTTTAAAATTTTTTCAGAAGGAGTTT
834 TTTTAAAATTTTTTCAGAGGGAGTTT
*
2035669 TGGCCCCAACCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAA-TCAGCTA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATTCAGCTA
*
2035733 AAAACTGGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
65 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
2035798 TGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
130 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* ** *
2035863 TGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATTACACATCATGTGTGCAC
195 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
2035928 ACCCCCTCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGG-T-T-C---T-CCGACG
260 A--CCC-CCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGATGCCGACG
* * * *
2035986 ATGGTGCCCTGGGC-AAAAACAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCACCCGCA
322 ATGGTGCCCCGGGCGAAAAA-AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGTA
* * * * * * *
2036050 ACCTTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACACACAAAAC
386 ACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * *
2036115 GAGCGTGCGGCCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCCGGGATCGATCGGGTCCCC
451 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCC
* * * * **
2036180 CTCAACGTGCTACCGATCCTGCTACCACAAACCTCGGTCTGGTCCAATCTTAGACTGGGAATGAA
516 CTC-AC--GCT---G----TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAA
* * *
2036245 CTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G--GGCACTACGCCAGCCAGAG
571 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAG
* *
2036306 AGGCGGGATGCACAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
636 AGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
2036371 TACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCATGTGA
701 TGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGA
* * * *
2036436 ACTTTCATGGCAAGACGACTCGTTTTCTATGTTTC-CTAATTTTTGAAACTTTTTTCGGTTCGAG
766 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-GATTTTTGAAACTTTTTACGGTTCGAG
* * *
2036500 ATTTTTTT-TAATTTTTCCAGA-AGAGTTT
830 ATTTTTTTAAAATTTTTTCAGAGGGAGTTT
* * ** * * *
2036528 TGGCCCCAAACTTGGTAGACGTCATCCATGTATTTTTGCGGGCATGCACAAAAACATTCAACTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
* * * *
2036593 AAACTCGTAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAGT
66 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
** * *
2036658 GGCTACTGGCAATAAACCTGTAAAATCTCAAATGCTGTTTAAGGAGGTGTGAGTTCTCGAGGTTT
131 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* **
2036723 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATAAGCGTACA
196 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA
* * * * *
2036788 CCCCCCCGACCCCCCAATCGTCGGAATCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCTGA
259 CACCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC--TGATGC-C---
** * * * * *
2036853 TGATGATGTTCTGGTGATGGTGCCCCGTACGAAAAATAATGTGGCACCAACATATGCTCGAGCCT
318 ----GA----C----GATGGTGCCCCGGGCGAAAAA-AATGCGGCACCAGCACATGCCCGAGCCC
* * * * * * * * * *
2036918 AGCATGTGCACCCGTAACCCCCAGTCCGGTCCGATCTTAGTCTGTGAATGAACTCCATATGCTTA
370 AGCATGTGCACCTGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * ***
2036983 GACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC-TCCGTATGC-CTAAGTCAACCCAT
435 -A----G--TCAAC-CC--A--C---GA-----AACGAGCGTGCG--GGCGCTCAG-CCGGCCA-
* * * * * **** **** *
2037046 GAAACGAGCGTG-TGGGTGCTCAACCGACCAGAGGACTAGGATGCGCAAGCCAGGGATTGGCTG-
476 G--A-G-G-G-GCAGGATGCGCAA--G-CC-GGGGA-TCGG-T-CGGGTCCCCCTCA--CGCTGT
* * * * * *
2037109 GGTCCCCTCAGCGTCCTTCCGATCCTGCTACCACAACCCTCGGTCTTGTCTGATCGTAGACTGGG
526 GCT-GCCGCAAC--CC-T-C-A-G----T---------CT--G----GTCTGATCTTAGACTGGG
** * *
2037174 AATGAACTCCGTATGCCTAAGCCAACCGACGAAAAAAGTGGGCGGGCGGGCAGGCCCTACGTCGG
565 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGTCGG
** *
2037239 CCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
630 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
*
2037304 TATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
695 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
2037369 ATGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGT
760 ATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
*** *
2037434 TC-AGGATTTTTTTAAAATTTTTTC-GAAAATATTTT
825 TCGA-GATTTTTTTAAAATTTTTTCAG-AGGGAGTTT
*
2037469 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
1 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
*
2037534 AAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
66 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
2037599 GGCTACTG
131 GGCTACTG
2037607 TAGACACCCA
Statistics
Matches: 8389, Mismatches: 1030, Indels: 735
0.83 0.10 0.07
Matches are distributed among these distances:
845 1 0.00
846 169 0.02
847 3 0.00
849 2 0.00
850 1 0.00
851 2 0.00
854 3 0.00
855 5 0.00
857 37 0.00
858 367 0.04
859 505 0.06
860 72 0.01
861 546 0.07
862 655 0.08
863 21 0.00
864 103 0.01
865 425 0.05
866 84 0.01
867 3 0.00
868 51 0.01
869 179 0.02
870 302 0.04
871 507 0.06
872 218 0.03
873 5 0.00
874 99 0.01
875 214 0.03
876 255 0.03
877 117 0.01
878 17 0.00
879 70 0.01
880 151 0.02
881 32 0.00
882 29 0.00
883 122 0.01
884 223 0.03
885 295 0.04
886 344 0.04
887 182 0.02
888 316 0.04
889 104 0.01
890 159 0.02
891 160 0.02
892 6 0.00
893 4 0.00
894 6 0.00
896 1 0.00
899 4 0.00
901 4 0.00
902 4 0.00
903 356 0.04
904 132 0.02
905 237 0.03
906 21 0.00
908 1 0.00
909 12 0.00
910 8 0.00
911 9 0.00
912 3 0.00
913 2 0.00
914 4 0.00
915 3 0.00
916 2 0.00
917 5 0.00
918 4 0.00
920 1 0.00
929 2 0.00
931 1 0.00
935 58 0.01
937 1 0.00
938 1 0.00
939 200 0.02
940 10 0.00
941 132 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (859 bp):
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCGGCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCTGATGCCGACGATGG
TGCCCCGGGCGAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCTGTAACCCT
CGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAC
GCTGTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTT
TTCAGAGGGAGTTT
Found at i:2036992 original size:26 final size:26
Alignment explanation
Indices: 2036953--2037031 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
2036943 CCGGTCCGAT
* *
2036953 CTTAGTCTGTGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
2036979 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
2037005 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
2037031 C
1 C
2037032 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:2037717 original size:15 final size:15
Alignment explanation
Indices: 2037676--2037719 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
2037666 AACTAGGTTC
2037676 TTATTTTGTATTATTT
1 TTATTTTGTATT-TTT
2037692 TTATTTT-TATTTTT
1 TTATTTTGTATTTTT
*
2037706 TTCTTTTGTATTTT
1 TTATTTTGTATTTT
2037720 AGGCATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.35
15 10 0.38
16 7 0.27
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.80
Consensus pattern (15 bp):
TTATTTTGTATTTTT
Found at i:2037738 original size:4 final size:4
Alignment explanation
Indices: 2037724--2037866 Score: 62
Period size: 4 Copynumber: 34.5 Consensus size: 4
2037714 TATTTTAGGC
* * * * * *
2037724 ATTT A-TT ATTT ATTT A-TT ATTACT ATGT ATTA ATAT ATGT ATAT CTTT
1 ATTT ATTT ATTT ATTT ATTT ATT--T ATTT ATTT ATTT ATTT ATTT ATTT
* * *
2037772 ATTT ATTT ATTT -TTT GTTAAT ATTT ATATGT ATTTT ATTT ATAT AGTT
1 ATTT ATTT ATTT ATTT ATT--T ATTT AT-T-T A-TTT ATTT ATTT ATTT
* *
2037820 ATAT ATTT A-TT ATTAT ATTAT AATTT ATTT ATTT A-TT ATTT TTTT AT
1 ATTT ATTT ATTT ATT-T ATT-T -ATTT ATTT ATTT ATTT ATTT ATTT AT
2037867 CTTGTAATAT
Statistics
Matches: 106, Mismatches: 19, Indels: 28
0.69 0.12 0.18
Matches are distributed among these distances:
3 15 0.14
4 68 0.64
5 10 0.09
6 12 0.11
7 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.65
Consensus pattern (4 bp):
ATTT
Found at i:2037847 original size:26 final size:26
Alignment explanation
Indices: 2037796--2037859 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
2037786 TGTTAATATT
*
2037796 TATATGTATT-TTATTTATATAGTTA
1 TATATTTATTATTATTTATATAGTTA
*
2037821 TATATTTATTATTATATTATA-ATTTA
1 TATATTTATTATTAT-TTATATAGTTA
*
2037847 TTTATTTATTATT
1 TATATTTATTATT
2037860 TTTTTATCTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.26
26 20 0.59
27 5 0.15
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (26 bp):
TATATTTATTATTATTTATATAGTTA
Found at i:2037866 original size:37 final size:37
Alignment explanation
Indices: 2037729--2037866 Score: 122
Period size: 38 Copynumber: 3.6 Consensus size: 37
2037719 TAGGCATTTA
* *
2037729 TTATTTATTTATTATTACTATGTATTAATATATGTATATCT
1 TTATTTATTTATTATT--TATTTATTATTATATGTATA--T
*
2037770 TTATTTATTTATT-TTT-TGTTAATATTTATATGTAT-T
1 TTATTTATTTATTATTTAT-TTATTA-TTATATGTATAT
* *
2037806 TTATTTATATAGTTATATATTTATTATTATAT-TATAAT
1 TTATTTATTTA-TTATTTATTTATTATTATATGTAT-AT
*
2037844 TTATTTATTTATTATTTTTTTAT
1 TTATTTATTTATTATTTATTTAT
2037867 CTTGTAATAT
Statistics
Matches: 81, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
36 14 0.17
37 19 0.23
38 23 0.28
39 10 0.12
40 2 0.02
41 13 0.16
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.65
Consensus pattern (37 bp):
TTATTTATTTATTATTTATTTATTATTATATGTATAT
Found at i:2037910 original size:43 final size:42
Alignment explanation
Indices: 2037842--2037924 Score: 100
Period size: 43 Copynumber: 2.0 Consensus size: 42
2037832 TTATATTATA
2037842 ATTTATTTATTTATTATTTTTTTATCT-TGTAATATTTTTTGG
1 ATTTATTTATTTATTATTTTTTTATCTGT-TAATATTTTTTGG
*
2037884 ATTTATCTTA-TT-TTATTTTTAATTATCTGTTAATTTTTTTT
1 ATTTAT-TTATTTATTATTTTT--TTATCTGTTAATATTTTTT
2037925 CTTTTTCGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
41 8 0.22
42 8 0.22
43 19 0.53
44 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.05, T:0.70
Consensus pattern (42 bp):
ATTTATTTATTTATTATTTTTTTATCTGTTAATATTTTTTGG
Found at i:2038880 original size:5 final size:5
Alignment explanation
Indices: 2038870--2038952 Score: 79
Period size: 5 Copynumber: 16.8 Consensus size: 5
2038860 TACCTTTATT
2038870 TTTTA TTTTA TTTT- TTTTA TTTT- TTTTA -TTT- TTTTA TTTTA -TTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
2038915 TTTTTA TTTTCA CTTTTA TTTGT- TTATTA TTTTA TTTT
1 -TTTTA TTTT-A -TTTTA TTT-TA TT-TTA TTTTA TTTT
2038953 CTTTAAATAA
Statistics
Matches: 67, Mismatches: 0, Indels: 22
0.75 0.00 0.25
Matches are distributed among these distances:
4 18 0.27
5 35 0.52
6 10 0.15
7 4 0.06
ACGTcount: A:0.16, C:0.02, G:0.01, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:2038889 original size:9 final size:9
Alignment explanation
Indices: 2038870--2038919 Score: 75
Period size: 9 Copynumber: 5.6 Consensus size: 9
2038860 TACCTTTATT
2038870 TTTTATTTTA
1 TTTT-TTTTA
2038880 TTTTTTTTA
1 TTTTTTTTA
2038889 TTTTTTTTA
1 TTTTTTTTA
2038898 -TTTTTTTA
1 TTTTTTTTA
*
2038906 TTTTATTTA
1 TTTTTTTTA
2038915 TTTTT
1 TTTTT
2038920 ATTTTCACTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
8 8 0.22
9 25 0.68
10 4 0.11
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:2038931 original size:22 final size:20
Alignment explanation
Indices: 2038870--2038952 Score: 73
Period size: 22 Copynumber: 4.0 Consensus size: 20
2038860 TACCTTTATT
2038870 TTTTATTTTATTTT--TTTTA
1 TTTT-TTTTATTTTCATTTTA
*
2038889 TTTTTTTTATTTTTTTATTTTA
1 TTTTTTTTA--TTTTCATTTTA
2038911 TTTATTTTTATTTTCACTTTTA
1 TTT-TTTTTATTTTCA-TTTTA
2038933 TTTGTTTATTATTTT-ATTTT
1 TTT-TTT-TTATTTTCATTTT
2038953 CTTTAAATAA
Statistics
Matches: 55, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
18 5 0.09
19 4 0.07
20 4 0.07
21 9 0.16
22 20 0.36
23 13 0.24
ACGTcount: A:0.16, C:0.02, G:0.01, T:0.81
Consensus pattern (20 bp):
TTTTTTTTATTTTCATTTTA
Found at i:2039415 original size:59 final size:57
Alignment explanation
Indices: 2038968--2039413 Score: 550
Period size: 58 Copynumber: 7.7 Consensus size: 57
2038958 AATAAAAATA
*
2038968 AAAAAAATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAATTTC
*
2039024 AAAAAAA-A-TTTT--GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAATTT-C
* * *
2039078 AAAAAAATTTTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATTAAATTTC
** *
2039136 AAAAAAA-AGTTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATGAAAGTTTC
1 AAAAAAATA-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATTAAA-TTTC
* * *
2039195 -CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCC
1 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT-TAAATTT-C
* *
2039254 AAAAAAAATTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCGAATTTTC
1 -AAAAAAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT-TAAATTTC
*
2039315 -AAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTCCTCTAAAATTAAAGTTTC
1 AAAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAATTAAA-TTTC
2039374 AAAAAGAATATTTTTGGGGAAAAGTTGAAAGTATCAATTT
1 AAAAA-AATATTTTTGGGGAAAAGTTGAAAGTATCAATTT
2039414 CCCTGCGCAA
Statistics
Matches: 349, Mismatches: 20, Indels: 38
0.86 0.05 0.09
Matches are distributed among these distances:
53 40 0.11
54 12 0.03
55 1 0.00
56 11 0.03
58 128 0.37
59 67 0.19
60 34 0.10
61 9 0.03
62 47 0.13
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (57 bp):
AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATTAAATTTC
Found at i:2048927 original size:9 final size:9
Alignment explanation
Indices: 2048909--2049013 Score: 97
Period size: 9 Copynumber: 10.7 Consensus size: 9
2048899 TACAATGCTT
2048909 AAAAACAATG
1 AAAAA-AATG
2048919 AAAAAAATG
1 AAAAAAATG
2048928 AAAAAAATGATG
1 -AAAAAA--ATG
2048940 AAAAAAATG
1 AAAAAAATG
2048949 AAAAAAAAAATG
1 ---AAAAAAATG
2048961 AAAAAAATG
1 AAAAAAATG
2048970 AAAAAAAATGATG
1 --AAAAAA--ATG
2048983 AAAAAAATG
1 AAAAAAATG
2048992 -AAAAAATG
1 AAAAAAATG
2049000 AAAAAAA-G
1 AAAAAAATG
2049008 AAAAAA
1 AAAAAA
2049014 TAAGAAGTGA
Statistics
Matches: 84, Mismatches: 0, Indels: 24
0.78 0.00 0.22
Matches are distributed among these distances:
8 15 0.18
9 25 0.30
10 11 0.13
11 18 0.21
12 12 0.14
13 3 0.04
ACGTcount: A:0.77, C:0.01, G:0.11, T:0.10
Consensus pattern (9 bp):
AAAAAAATG
Found at i:2048934 original size:12 final size:11
Alignment explanation
Indices: 2048919--2048997 Score: 78
Period size: 12 Copynumber: 7.4 Consensus size: 11
2048909 AAAAACAATG
2048919 AAAAAAATG--
1 AAAAAAATGAA
*
2048928 AAAAAAATGATG
1 AAAAAAATGA-A
2048940 AAAAAAATGAAA
1 AAAAAAATG-AA
2048952 AAAAAAATG--
1 AAAAAAATGAA
2048961 AAAAAAATG-A
1 AAAAAAATGAA
*
2048971 AAAAAAATGATG
1 AAAAAAATGA-A
2048983 AAAAAAATGAA
1 AAAAAAATGAA
2048994 AAAA
1 AAAA
2048998 TGAAAAAAAG
Statistics
Matches: 60, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
9 18 0.30
10 9 0.15
11 4 0.07
12 28 0.47
13 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.11
Consensus pattern (11 bp):
AAAAAAATGAA
Found at i:2048934 original size:21 final size:20
Alignment explanation
Indices: 2048909--2049013 Score: 128
Period size: 21 Copynumber: 5.2 Consensus size: 20
2048899 TACAATGCTT
*
2048909 AAAAACAATGAAAAAAATGA
1 AAAAAAAATGAAAAAAATGA
*
2048929 AAAAAATGATGAAAAAAATGAA
1 AAAAAA-AATGAAAAAAATG-A
2048951 AAAAAAAATGAAAAAAATGA
1 AAAAAAAATGAAAAAAATGA
2048971 AAAAAAATGATGAAAAAAATG-
1 AAAAAAA--ATGAAAAAAATGA
2048992 --AAAAAATGAAAAAAA-GA
1 AAAAAAAATGAAAAAAATGA
2049009 AAAAA
1 AAAAA
2049014 TAAGAAGTGA
Statistics
Matches: 75, Mismatches: 3, Indels: 15
0.81 0.03 0.16
Matches are distributed among these distances:
16 1 0.01
17 10 0.13
19 8 0.11
20 13 0.17
21 24 0.32
22 19 0.25
ACGTcount: A:0.77, C:0.01, G:0.11, T:0.10
Consensus pattern (20 bp):
AAAAAAAATGAAAAAAATGA
Found at i:2050099 original size:42 final size:43
Alignment explanation
Indices: 2050028--2050200 Score: 161
Period size: 42 Copynumber: 4.1 Consensus size: 43
2050018 CATGTTGTCA
*
2050028 AGGAGCAATTTAC--TTCCAAAAGTTGTGGTGCCTCTG-TTTAG
1 AGGAGCAA-TTACTTTTCCAAAAGTCGTGGTGCCTCTGATTTAG
* *
2050069 AGGAGCAATTTA-TTTTCCAAAAGTCATGGTGCCTCTGAATTAG
1 AGGAGCAA-TTACTTTTCCAAAAGTCGTGGTGCCTCTGATTTAG
*
2050112 A-GAGGCAATTACTTTTCC--AAGTCGT-GTGCC-CTGCTTTTAG
1 AGGA-GCAATTACTTTTCCAAAAGTCGTGGTGCCTCTG-ATTTAG
* *
2050152 AGGAGCAATTACTGTTTCTCAAAAGTCGTTGAGCCT-TG-TTTAG
1 AGGAGCAATTACT-TTTC-CAAAAGTCGTGGTGCCTCTGATTTAG
2050195 AGGAGC
1 AGGAGC
2050201 TTTGGTCAAA
Statistics
Matches: 112, Mismatches: 7, Indels: 24
0.78 0.05 0.17
Matches are distributed among these distances:
39 3 0.03
40 19 0.17
41 24 0.21
42 27 0.24
43 26 0.23
44 7 0.06
45 6 0.05
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (43 bp):
AGGAGCAATTACTTTTCCAAAAGTCGTGGTGCCTCTGATTTAG
Found at i:2050218 original size:6 final size:6
Alignment explanation
Indices: 2050207--2050254 Score: 55
Period size: 6 Copynumber: 8.0 Consensus size: 6
2050197 GAGCTTTGGT
*
2050207 CAAAAA CAAAAA CAAAAA -AAAAA CACAAAA -AATAAA AAAAAA CAAAAA
1 CAAAAA CAAAAA CAAAAA CAAAAA CA-AAAA CAA-AAA CAAAAA CAAAAA
2050255 AATGAAAATG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
5 6 0.16
6 25 0.68
7 6 0.16
ACGTcount: A:0.85, C:0.12, G:0.00, T:0.02
Consensus pattern (6 bp):
CAAAAA
Found at i:2050230 original size:17 final size:18
Alignment explanation
Indices: 2050208--2050262 Score: 76
Period size: 19 Copynumber: 3.0 Consensus size: 18
2050198 AGCTTTGGTC
*
2050208 AAAAACAAAAACA-AAAA
1 AAAAACAAAAAAATAAAA
2050225 AAAAACACAAAAAATAAAA
1 AAAAACA-AAAAAATAAAA
2050244 AAAAACAAAAAAATGAAAA
1 AAAAACAAAAAAAT-AAAA
2050263 TGTTGAGTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
17 7 0.21
18 12 0.35
19 15 0.44
ACGTcount: A:0.85, C:0.09, G:0.02, T:0.04
Consensus pattern (18 bp):
AAAAACAAAAAAATAAAA
Found at i:2050236 original size:9 final size:9
Alignment explanation
Indices: 2050208--2050256 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
2050198 AGCTTTGGTC
2050208 AAAAACAAA
1 AAAAACAAA
2050217 AACAAA-AAA
1 AA-AAACAAA
2050226 AAAACACAAA
1 AAAA-ACAAA
*
2050236 AAATA-AAA
1 AAAAACAAA
2050244 AAAAACAAA
1 AAAAACAAA
2050253 AAAA
1 AAAA
2050257 TGAAAATGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
8 9 0.26
9 16 0.47
10 9 0.26
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (9 bp):
AAAAACAAA
Found at i:2050445 original size:15 final size:16
Alignment explanation
Indices: 2050415--2050456 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
2050405 TCGGTTCTTA
* *
2050415 TTTTGCATTATTTTTC
1 TTTTGTATTTTTTTTC
2050431 TTTT-TATTTTTTTTC
1 TTTTGTATTTTTTTTC
2050446 TTTTGTATTTT
1 TTTTGTATTTT
2050457 AGGCATTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.10, C:0.07, G:0.05, T:0.79
Consensus pattern (16 bp):
TTTTGTATTTTTTTTC
Found at i:2050544 original size:15 final size:17
Alignment explanation
Indices: 2050531--2050577 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
2050521 ATATTATATG
*
2050531 TATTTTATTTATATAGT
1 TATTATATTTATATAGT
*
2050548 TATTATATTTAT-TATT
1 TATTATATTTATATAGT
2050564 ATATTATAATTTAT
1 -TATTAT-ATTTAT
2050578 TTTTTTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 3 0.12
17 17 0.65
18 6 0.23
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (17 bp):
TATTATATTTATATAGT
Found at i:2050655 original size:25 final size:25
Alignment explanation
Indices: 2050627--2050674 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
2050617 TTATTTTTAA
2050627 TTATCTG-TTAATT-TTTTCTTTTCGT
1 TTATCTGATT-ATTATTTT-TTTTCGT
2050652 TTATCTGATTATTATTTTTTTTC
1 TTATCTGATTATTATTTTTTTTC
2050675 TTTTTTTGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.15, C:0.10, G:0.06, T:0.69
Consensus pattern (25 bp):
TTATCTGATTATTATTTTTTTTCGT
Found at i:2053902 original size:26 final size:26
Alignment explanation
Indices: 2053864--2053916 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
2053854 CTAGTCCGAT
2053864 CTTAGACACGGAATCAACTTC-GTATG
1 CTTAGACACGGAATCAA-TTCTGTATG
** *
2053890 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACACGGAATCAATTCTGTATG
2053916 C
1 C
2053917 CAAAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.13
26 20 0.87
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACACGGAATCAATTCTGTATG
Found at i:2056053 original size:870 final size:869
Alignment explanation
Indices: 2051737--2058826 Score: 8475
Period size: 870 Copynumber: 8.1 Consensus size: 869
2051727 NNNNNNNNNN
*
2051737 CTAAAAACTCGAAGTGTA-AAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTT
1 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
2051800 TAATGGCTACTGGTAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAG
66 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
2051864 G-TTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGTGCG
131 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
2051926 CACACCCCCCCGGCCCCCCCAATCA-CCGAAACCCAATGCCGTCGGTCA-GTTCTCCGATGATGC
196 CACA-CCCCCCGG-CCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGC
* *
2051989 TCCGACGAT-GTGGCCTGGGCG-AAAAAAATGCGGCACCAGCACATGCCTGAG-CCAGCATGTGC
259 T-CG-CGATGGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
** *
2052051 ACCCTTAACCCTCTGGTCCTGGTGATCCTATCTTAGACT-GGAATGAACT-CGTATGCCTAAGTC
322 ACCCGCAACCCTC-GGT-CTGGT--T-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
2052114 AACCAACGAAACGAGCGTG-GGGCGCTAAGCCGACCAGAGGGGCAAGGATGCGCAAGCCGGGGAT
382 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGC-AGGATGCGCAAGCCGGGGAT
* * * *
2052178 CGATCGGGGTCCCCCTCTAACGTGCTGCCGATCCTACGTACTGCAG-ACCCCTCGGTTTCGATTC
446 CGATC-GGGTCCCCCTC-AGCGTGCTGCCGATCCT--G--CTGCAGCAACCCTCAG-TTCG-GTC
* * * * *
2052242 TGATTCTTAGACTGGGAATGTAACTCTGTATGCCTTAAGCCAACTGACGGAAAAAGAGGGCGGGT
503 -CAATCTTAGACTGGGAATG-AACTCTGTATGCC-TAAGCCAACCGAC-G-AAACGA--GCGGGC
* * * *
2052307 GGGCGGGCACTACGCCGGCCTGAAAAGGCGGGATGCGCAATGCCCGTGGATCGGATAGGGTGGTA
561 GGGCGGGCACTACGTCAGCCAG-AGAGGCGGGATGCGCAA-G-CCGTGGATC-GATAGGGTGGTA
2052372 GGGTCGGGTTTAGGCACATCTTCATATTT-TGCCATGCCCAATGCCATTTTTATGGCTTGTAAA-
622 -GGT-GGGTTTAGGCACATCTTCATATTTCTGCCATG-CCAATGCCATTTTTATGGCTTGTAAAT
*
2052435 TCATACAATGGTCCCTTAAGCCTTCATGGTGAAGTTTCATGGC-AGACGACTCGTTTTCCTACTT
684 TCATACAATGGTCCCTTAAGCCTTCAT-GTGAAGTTTCATGGCAAGACGACTCGTTTT-CTATTT
** * *
2052499 TTCTATAATTTTTGAAACCTTCTTTTACGGTTCCGGGATTTTTTAAAAATTTTTTCAGAA-GACT
747 TTC-ACGATTTTTGAAA-C-T-TTTTACGGTT-CGGGATTTTTTTAAAATTTTTTCAGAAGGAGT
* *
2052563 GTTT-GCCCCAAAC-TGGTAGACGTGATCCTTTTA-TTTTATTGGCATGCGCAAAAAAATTCAG
807 -TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAG
*
2052624 C-CAAAACTCGAAGTGTACAGGA-TTTGTTGA-CATTTGAAAAAAGTGTCCCCATTTCAGACACT
1 CTAAAAACTCGAAGTGTACAGGATTTTG-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC-
*
2052686 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
64 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
2052751 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CTAGTACAAGCACCCATCGCACATCATGTG
129 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
2052815 TGCACACCCCCTCAGCCCCCCTAATCATCGGAACCCCAATGCCCTTGATCAGGTTCTCCGATGAT
194 CGCACACCCCC-CGGCCCCCC-AATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGAT
** * *
2052880 GCTTCGACGATGGTGGCCC-AAGTGAAAAAAAATGCGGCACCAG--CATCCCCCGAGCCCAGCAT
257 GC-TCG-CGATGGT-GCCCTGGGCGAAAAAAAATGCGGCACCAGCACAT-GCCCGAGCCCAGCAT
* **
2052942 GTGCACCCGCAACCCTTGGTCCAGTCCAATCTTAGACTGGAAATGAACTCCATATGCTTGACTGG
318 GTGCACCCGCAACCCTCGGT-C--T----GGTT---C--G--AT---CT---TA-----GACTGG
* * * * * * *
2053007 GAATGAACTCTGTATGGCAAAGTTAACCCACGAAAGGAGTGTGCGGGCGCTCAGCCGGCCAGAGG
358 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGG
* * * * * * ** * **
2053072 GGCAGTATGCGCAAGCTGAGAATCGATCGGTTCCCCTTCAGC-TGCTATCGATCCTACTGTGGCA
423 GGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCAGCA
* * * * *
2053136 ACCCTCGGTTCGGTCCAAACTTAGACTGGGAATGAACAC--T-TG--TAAGTCAACCCACGAAAC
488 ACCCTCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAC
** *** *
2053196 GAGCGTTCGGGCTCTCAACTGACGGTC-GAACAGAATTGAGTG-GGCAAGATAGC-CAA-CC-TG
553 GAGCGGGCGGGCGGGC-ACT-AC-GTCAG-CCAG-A--GAG-GCGG---GAT-GCGCAAGCCGTG
*
2053256 GATCGATAGGAGTGGTAGGT--GTTTA-GCACATCTTCATATTTCTACCATG-CAATGCCA-TTT
606 GATCGATAGG-GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
2053316 TATGG-TTGTAAATTCATACAATGGTCCCTTTAAGCC-TCATGTGAAGTTTCATGGCAAGACGAC
670 TATGGCTTGTAAATTCATACAATGGTCCC-TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * *
2053379 TCGTTTTTCATATTTTTAACGA-TTTTCAAACTTTTTACGGTT-GGGATTTTTTTAAAACTTTTT
734 TCG-TTTTC-TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTT
* *
2053442 CAGAAGGAGTTTTGGCTCC-AACGTTGGTAGTACGTGATCCTTGTATTTTTGATTGGCATGCAAA
797 CAGAAGGAGTTTTGGCCCCAAAC-TTGGTAG-ACGTGATCCTTGTATTTTT-ATTGGCATGCACA
*
2053506 AAAAAACTCAG
859 AAAAAATTCAG
2053517 CTTAAAAACTCGAAGTGGTAACAGGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACA
1 C-TAAAAACTCGAAGT-GT-ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
2053581 CTTTAATGGCTACTGGCCAGGCAAACCTGTAAAATCTCACAACTACTCTTTAAGGGGGTGTGACT
63 CTTTAATGGCTACTGG-CA-GCAAACCTGTAAAATCTCA-AA-TGCTCTTTAAGGGGGTGTGAGT
*
2053646 TCTCGAGGTTTTGATGAGGGATAGGGGGCCAATATCAACGGACCAAGTACCCAGCACCCATCGCA
124 TCTCGAGG-TTTGATGAGGGATAGGGGGCCAATAT-AA-GGGCCAAGTA-CCAGCACCCATCGCA
* *
2053711 CATCATGTG-GCACACCACCCC-GCCCCCCAATCATCGGAACACCAATACCGTCGGTCAGGTTCT
185 CATCATGTGCGCACACC-CCCCGGCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT
* ** *
2053774 CC---GA------CGATGGTGCCTTGGGCGAAAAAAAATGCGATACCAGCACATGCCCGAGCCTA
249 CCGATGATGCTCGCGATGGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
2053830 GCATGTACACCCGTAACCCTTGATCTAGTCCGATCTTAGACACGGAATCAACTTCGTATGCTTAG
314 GCATGTGCACCCGCAACCC----TC--G---G-TC-T------GG-------TTCG-AT-CTTAG
* * * * * * * *
2053895 ACTGGGAATGAATTCTGTATGCCAAAGTTAACCCACGGAACGAGTGTGCGGGCACTCAGCCGCCC
353 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACC
* * * * * * * *
2053960 AGA-GGGCAGTATGCGCAAGCCAGGGATTGACCAGGTCCCCCTCAGC-TGCTACCAATCCTGCTA
418 AGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTG
* * * * *
2054023 CGGCAACCCTCAGTTTGGTCCAAACTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGAC
483 CAGCAACCCTCAGTTCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
* * * *
2054088 GAAATGAGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGAT
548 GAAACGAGCGGGCGGGC--G--GGCACTACGTCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGAT
* *
2054153 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGCCAAGCCAATGCCATTTTTATG
609 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATG
*
2054218 GCTTGTAAATTCATACAATGGTCCCTTAACCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
674 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT
* *
2054283 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAATG
739 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA-G
* *
2054348 G-GTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTATTGGCATG-GCAAAAAAATTC
803 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTC
2054411 AG
868 AG
2054413 CT-AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
1 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
2054477 TAATTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTTGA
66 TAA-TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
2054542 GGTTTGATGAGGAATAGGGGGCCAATAAATAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
130 GGTTTGATGAGGGATAGGGGGCCAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * ** * *
2054607 CGCACACCCCCC-ACCCCCAAATCGTAGGAACCCCAATGCCACCGGTCGGGTTGTCC------G-
194 CGCACACCCCCCGGCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGC
** * *** *
2054664 --GCGATGGCACCCTGGGAGAAAAAAAATTTTGCACCAGCACATGCCCTAGCCCAGCATGTGCAC
259 TCGCGATGGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAC
* * * * ** *
2054727 CAGTAACCCTCGGTCCGTTTCGATAATAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC
324 CCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * ** *
2054792 GAAACGAGTGTGAGGGCGCTCAGCCGGCCAGAGGGCCAGGATATGCAAGCCGGGGATCGACCGGG
389 GAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGG
* * ** * * * *
2054857 TCCCCTTCAGCATGCTATCGATCCTGTTACTA-CAACCCTCAGTCCGGTCTAATCTTAGACTGGG
454 TCCCCCTCAGCGTGCTGCCGATCCTGCTGC-AGCAACCCTCAGTTCGGTCCAATCTTAGACTGGG
* * * * *
2054921 AATGAACT-TCGTATGCCTAAGCCAACCGATGAAACAAACGGGCGGGCGGGTGGCACCACGTCGG
518 AATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G-GGCACTACGTCAG
*
2054985 TCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
579 CCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
2055050 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATG-CTT
644 TATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA-GCCTT
*
2055114 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAGGG
708 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * *
2055179 TTTGGGATTTTTTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACTTAGTAGACGTGATCCTT
773 TTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
2055244 GTATTTTTTTTGGCATGCACAAAAAAATTCAG
838 GTATTTTTATTGGCATGCACAAAAAAATTCAG
* *
2055276 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTG
1 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
2055341 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTAAGTTCTGGAG
66 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
2055406 GTTTGATAAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA
131 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * *
2055471 CACACCCCCCGGGCCCCCCAATCGTCGGAACCCTAATGCTGTCGGTCAGGTTCTCCGGTGATGCT
196 CACACCCCCC-GGCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCT
* * * **
2055536 CCGACAATGGTGCCCCGGG-G-GAAAAAATGCAACACCAGCACATGCCCGAGCCCAGCATGTGCA
260 -CG-CGATGGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCA
*
2055599 CCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAAGGAACTCCGTATGCCTAAGTCAACCCA
323 CCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * ** *
2055664 CGAAACGAGCCTGCGGGCGCTCAGCCGACCAGAGGGGTAGGATGCGCAAGTAGGGGATCGGTCGG
388 CGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGG
* * * * * * *
2055729 GTCCTCCTCAGTGTGCTGCTGATCCTGCTGCAGCCACCCTCAGTTCAGTCTATTCTTAGA-TAGG
453 GTCCCCCTCAGCGTGCTGCCGATCCTGCTGCAGCAACCCTCAGTTCGGTCCAATCTTAGACT-GG
* * * * *
2055793 GAATGAACTATGTTTGGCTAAGCTAACCGACGAAACGAGCAGGCGGGCGGGCACTACG-CAAGCC
517 GAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTC-AGCC
*
2055857 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATA
581 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
2055922 TTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
646 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* *
2055987 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTT
711 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
* * *
2056052 GGGATTTTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGCA
776 GGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
2056117 GTTTTATTGGCATGCATAAATAAATTCAG
841 TTTTTATTGGCATGCACAAAAAAATTCAG
* * *
2056146 CTAAAAACTCGAAGTGTACAGGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAGACGCTT
1 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
2056211 TAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGATGGGAGTTCTCAAG
66 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* ***
2056276 GTTTGATTAGGGATAGGGGGCCAATATAAGGGCCAAACGCCAGCACCCATCGCACATCATGTGCG
131 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
** * * *
2056341 CACACCCCCCGGCCCCCCAATCGCCGGATCCCCAATGCCGCCGATCAGGTTCT-C--TGA-----
196 CACACCCCCCGGCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTC
* * * *
2056398 -CGATGGTG-CCTCGGG-GAAAACAAATACGACACCAGCACATGCCCGAGCCCAGCATGTTCACC
261 GCGATGGTGCCCT-GGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACC
**
2056460 CTTAACCCTCGGTCTGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
325 CGCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* *
2056524 AAAACGAGCGTGCGGGCGC-C-G-CGTAGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG-GC
389 GAAACGAGCGTGCGGGCGCTCAGCCG-A--CCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATC
* ** * * * *
2056585 TAGGTCCCCCTCAGCACGCTGCCAATCCTGCTGTC-GGACCCCT-AGGTCTGGTCCAATCTTAGA
451 -GGGTCCCCCTCAGCGTGCTGCCGATCCTGCTG-CAGCAACCCTCAGTTC-GGTCCAATCTTAGA
* **
2056648 CTGAGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTAC
513 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G--GGCACTAC
* * * * *
2056713 GTCAGCCAGAGAGGCGGGATGCGTAAGTCATGGATAGATAAGGTGGTAGGTGGGTTTAGGCACAT
574 GTCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
2056778 CTTCATATTTCTGCCATGCCAATGCAAATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
639 CTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
2056843 CCTTCATGTGAAGTTTCATGGTAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTT
704 CCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* ** * *
2056908 ACCGTTCGATATTTTTTTTAAATTTTTTCAGAA-GAGTTTTGGCCCCAACCTTGGTAGACGTGAT
769 ACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*
2056972 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
834 CCTTGTATTTTTATTGGCATGCACAAAAAAATTCAG
*
2057008 CTAAAAACTGGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
1 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
2057073 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
66 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
2057138 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCACACATCATGTGCG
131 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
2057203 CACACCCCCCGGCCCCCCAATCAACAGAACCCCAATACCGTCGGTCAGGTTCTCCGATGATGCTC
196 CACACCCCCCGGCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCT-
* * *
2057268 CGGTGATGGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCCAAGCCCAACATGTGCAC
260 C-GCGATGGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCAC
* * * *
2057333 CCGCAACCCTCAGTCT-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCAAAGTTAACCCA
324 CCGCAACCCTCGGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * *
2057397 TGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCAAGATGCGCAAACCCGGGATCGACCGG
388 CGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGG
* * * * ** * * *
2057462 GTCCCCTTCAACGTGCTACCGATCCTGCTACCA-CAACCCTTGGTCCGATCCAATCTTCGACTGG
453 GTCCCCCTCAGCGTGCTGCCGATCCTGCT-GCAGCAACCCTCAGTTCGGTCCAATCTTAGACTGG
* *
2057526 GAATGAACT-TCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCACTACGCCAGCC
517 GAATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCAGCC
*
2057590 AGAGAGGCGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
581 AGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
2057655 TTTCTGCCCTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGT-CCTTAAGCCTTCAT
646 TTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAT
* * * *
2057718 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTC
711 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC
*
2057783 GGGATTTTTTTTAAAAATTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGT
776 GGGA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
2057847 ATTTTT-TTGGCATGCACAAAAAAATTCAG
840 ATTTTTATTGGCATGCACAAAAAAATTCAG
*
2057876 CTAAAAACTCGAAGTGTATAGGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTT
1 CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
2057940 TAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAG
66 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
2058003 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
131 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * **
2058068 CACACCCCCCCGGCCCCCCAATC-GCTGGAACCCCAATGCTGCCGGTCA-GTTCTCCGGCGATGC
196 CACA-CCCCCCGGCCCCCCAATCATC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGC
* * * * * * *
2058131 TTCGGTGATGATGCCGGTGATGGCCTCG-AAAAAAATACGGCACCAACGCATGCTCGAGCCCAGC
259 -TC-GCGATGGTGCC-CTG--GG---CGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * **
2058195 ATGTACACCTGCAACCCTCGGTCCGGTCCGATCTTAGACTATGAATGAACTCCGTATGCCTAAGT
316 ATGTGCACCCGCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
2058260 CAACCCATGAAACGAACGTGTGGGCACTCAACCGGCCAGA-GGGCTAGGATGCGCAAGCCAGGGA
381 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGC-AGGATGCGCAAGCCGGGGA
* * * * * * **
2058324 TTGGTCGGGTCCCCCTCAGCGTCCTTCCGATCCTGCTACA-CAACCCTC-GGTCTGGTCTGATCT
445 TCGATCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCAGCAACCCTCAGTTC-GGTCCAATCT
* *
2058387 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGATGGGCGGGCA
509 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----GGGCGGGCA
* *
2058452 CTACGTCGGCCAGAGAGGCGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
570 CTACGTCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
2058517 ACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
635 ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
2058582 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
700 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
* *
2058647 TTTTACAGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC-AACTTGGTAGACG
765 TTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
2058711 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
830 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAG
*
2058751 CTAAAAACTCGAAGTGTACAGGATTTTTGTGACCATTTG-AAAAAGTGTCCCTATTT-AGACACT
1 CTAAAAACTCGAAGTGTACAGGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
2058814 TTAATGGCTACTG
65 TTAATGGCTACTG
2058827 TAGACCCCAA
Statistics
Matches: 5413, Mismatches: 564, Indels: 464
0.84 0.09 0.07
Matches are distributed among these distances:
856 2 0.00
857 4 0.00
858 19 0.00
859 227 0.04
860 2 0.00
861 65 0.01
862 641 0.12
863 402 0.07
864 99 0.02
865 114 0.02
866 70 0.01
867 43 0.01
868 140 0.03
869 187 0.03
870 736 0.14
871 5 0.00
872 3 0.00
873 343 0.06
874 328 0.06
875 160 0.03
876 33 0.01
877 4 0.00
878 1 0.00
881 1 0.00
883 2 0.00
886 25 0.00
887 151 0.03
888 73 0.01
889 70 0.01
890 74 0.01
891 94 0.02
892 182 0.03
893 185 0.03
894 90 0.02
895 92 0.02
896 68 0.01
897 106 0.02
898 98 0.02
899 109 0.02
900 54 0.01
901 53 0.01
902 43 0.01
903 12 0.00
904 18 0.00
905 33 0.01
906 3 0.00
907 6 0.00
908 16 0.00
909 4 0.00
910 10 0.00
911 8 0.00
914 11 0.00
915 6 0.00
916 19 0.00
917 47 0.01
918 22 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (869 bp):
CTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCAATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTC
GCGATGGTGCCCTGGGCGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
GCAACCCTCGGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTC
CCCCTCAGCGTGCTGCCGATCCTGCTGCAGCAACCCTCAGTTCGGTCCAATCTTAGACTGGGAAT
GAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCAGCCAGAGA
GGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
GCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGAT
TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
ATTGGCATGCACAAAAAAATTCAG
Found at i:2059022 original size:4 final size:4
Alignment explanation
Indices: 2059003--2059075 Score: 53
Period size: 4 Copynumber: 17.8 Consensus size: 4
2058993 TTTTTGTTAA
* * *
2059003 TATT TATAT GTATT TATT TATA TAGT TATA TATT TA-T TATT ATATT ATAATT
1 TATT TAT-T -TATT TATT TATT TATT TATT TATT TATT TATT -TATT -T-ATT
2059055 TATT TATT TATT T-TT T-TT TAT
1 TATT TATT TATT TATT TATT TAT
2059076 CTTGTAATAT
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
3 9 0.16
4 33 0.58
5 9 0.16
6 6 0.11
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (4 bp):
TATT
Found at i:2059022 original size:14 final size:16
Alignment explanation
Indices: 2058998--2059047 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 16
2058988 ATTTTTTTTT
2058998 GTTA-ATATTTATAT-
1 GTTATATATTTATATA
*
2059012 G-TATTTATTTATATA
1 GTTATATATTTATATA
2059027 GTTATATATTTAT-TA
1 GTTATATATTTATATA
2059042 -TTATAT
1 GTTATAT
2059048 TATAATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 2 0.06
14 16 0.52
15 3 0.10
16 10 0.32
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (16 bp):
GTTATATATTTATATA
Found at i:2059031 original size:22 final size:20
Alignment explanation
Indices: 2059002--2059065 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 20
2058992 TTTTTTGTTA
2059002 ATAT-TTATATGTATTTATTT
1 ATATATTATAT-TATTTATTT
2059022 ATATAGTTATA-TATTTA-TT
1 ATATA-TTATATTATTTATTT
2059041 ATTATATTATAATTTATTTATTT
1 A-TATATTAT-A-TTATTTATTT
2059064 AT
1 AT
2059066 TTTTTTTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
19 7 0.19
20 15 0.41
22 12 0.32
23 3 0.08
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (20 bp):
ATATATTATATTATTTATTT
Found at i:2059104 original size:42 final size:41
Alignment explanation
Indices: 2059052--2059132 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 41
2059042 TTATATTATA
* *
2059052 ATTTATTTATTTATTTTTTTTTATCT-TGTAATATTTTTTGG
1 ATTTATTTATTTATTTTTATTAATCTGT-TAATATTTTTTGG
2059093 ATTTATCTTATTTATTTTTATTAATCTGTTAATATTTTTT
1 ATTTAT-TTATTTATTTTTATTAATCTGTTAATATTTTTT
2059133 TCTTTTTTCG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
41 6 0.17
42 29 0.81
43 1 0.03
ACGTcount: A:0.22, C:0.04, G:0.05, T:0.69
Consensus pattern (41 bp):
ATTTATTTATTTATTTTTATTAATCTGTTAATATTTTTTGG
Found at i:2059520 original size:19 final size:19
Alignment explanation
Indices: 2059493--2059530 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
2059483 CTAGATTTCG
2059493 GTTGAATTTTCTGACGAAA
1 GTTGAATTTTCTGACGAAA
*
2059512 GTTGCATTTTCTGACGAAA
1 GTTGAATTTTCTGACGAAA
2059531 ATTTCGGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.37
Consensus pattern (19 bp):
GTTGAATTTTCTGACGAAA
Found at i:2060077 original size:5 final size:5
Alignment explanation
Indices: 2060067--2060159 Score: 92
Period size: 5 Copynumber: 19.6 Consensus size: 5
2060057 CCTTTTTACC
*
2060067 TTTAT TTTA- -TTAT TTTAT TTTAT TTTA- -TTAT TTT-T TTTAC TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT
* *
2060112 TTTAT TTTTT TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
2060160 CTTTAAATAA
Statistics
Matches: 73, Mismatches: 6, Indels: 18
0.75 0.06 0.19
Matches are distributed among these distances:
3 9 0.12
4 4 0.05
5 54 0.74
6 2 0.03
7 4 0.05
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:2060088 original size:18 final size:18
Alignment explanation
Indices: 2060067--2060159 Score: 102
Period size: 18 Copynumber: 5.2 Consensus size: 18
2060057 CCTTTTTACC
2060067 TTTATTTTATTATTTTAT
1 TTTATTTTATTATTTTAT
2060085 TTTATTTTATTATTTT-T
1 TTTATTTTATTATTTTAT
* *
2060102 TTTACTTTATTTTATTTTTT
1 TTTA-TTT-TATTATTTTAT
*
2060122 TTTATTTTCA--CTTTTAT
1 TTTATTTT-ATTATTTTAT
*
2060139 TTTGTTTTATTATTTTAT
1 TTTATTTTATTATTTTAT
2060157 TTT
1 TTT
2060160 CTTTAAATAA
Statistics
Matches: 63, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
16 1 0.02
17 17 0.27
18 29 0.46
19 11 0.17
20 5 0.08
ACGTcount: A:0.17, C:0.03, G:0.01, T:0.78
Consensus pattern (18 bp):
TTTATTTTATTATTTTAT
Found at i:2060241 original size:60 final size:60
Alignment explanation
Indices: 2060174--2060633 Score: 602
Period size: 60 Copynumber: 7.7 Consensus size: 60
2060164 AAATAAAAAT
2060174 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCA
*
2060234 AAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCCA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTCCA
*
2060295 AAAAAATATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-C-
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTCCA
** * *
2060353 AAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC-
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTCCA
* *
2060414 ---AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTCCA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTCCA
* *
2060473 AAAAAAAATTATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAATTTTCA
1 AAAAAAAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCA
** * * *
2060534 AAAAATCA-ATTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT-AAATTAAAGTTT-C-
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAAATAAA-TTTCCA
* *
2060592 -AAAAGAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
2060634 CTGTGCAAGA
Statistics
Matches: 359, Mismatches: 27, Indels: 30
0.86 0.06 0.07
Matches are distributed among these distances:
57 5 0.01
58 94 0.26
59 80 0.22
60 97 0.27
61 37 0.10
62 5 0.01
63 41 0.11
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (60 bp):
AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCA
Found at i:2070187 original size:12 final size:12
Alignment explanation
Indices: 2070172--2070264 Score: 78
Period size: 11 Copynumber: 8.2 Consensus size: 12
2070162 AAAAACAATG
2070172 AAAAAATGAAAA
1 AAAAAATGAAAA
2070184 AAAAAATGATGAAA
1 AAAAAATGA--AAA
2070198 AACAAAATG--AA
1 AA-AAAATGAAAA
2070209 AAAAAATG-AAA
1 AAAAAATGAAAA
*
2070220 AAAAAATGATGAA
1 AAAAAATGA-AAA
2070233 AAAAAA-G---A
1 AAAAAATGAAAA
2070241 AAAAAAT-AAAA
1 AAAAAATGAAAA
2070252 AAAAAA-GAAAA
1 AAAAAATGAAAA
2070263 AA
1 AA
2070265 GAAGTGAATG
Statistics
Matches: 69, Mismatches: 1, Indels: 23
0.74 0.01 0.25
Matches are distributed among these distances:
8 7 0.10
10 6 0.09
11 27 0.39
12 10 0.14
13 8 0.12
14 5 0.07
15 6 0.09
ACGTcount: A:0.81, C:0.01, G:0.10, T:0.09
Consensus pattern (12 bp):
AAAAAATGAAAA
Found at i:2070197 original size:15 final size:15
Alignment explanation
Indices: 2070177--2070207 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2070167 CAATGAAAAA
2070177 ATGAAAAAAAAAATG
1 ATGAAAAAAAAAATG
*
2070192 ATGAAAAACAAAATG
1 ATGAAAAAAAAAATG
2070207 A
1 A
2070208 AAAAAAATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.13, T:0.13
Consensus pattern (15 bp):
ATGAAAAAAAAAATG
Found at i:2070210 original size:22 final size:21
Alignment explanation
Indices: 2070162--2070282 Score: 81
Period size: 23 Copynumber: 5.5 Consensus size: 21
2070152 TACTATGCTT
*
2070162 AAAAACAATGAAAAAATGAAA--
1 AAAAAAAATGAAAAAA--AAATG
2070183 AAAAAAATGATGAAAAACAAAATG
1 AAAAAAA--ATGAAAAA-AAAATG
2070207 AAAAAAAATGAAAAAAAAATG
1 AAAAAAAATGAAAAAAAAATG
*
2070228 ATGAAAAAAAAGAAAAAAATAA--
1 A--AAAAAAATGAAAAAAA-AATG
*
2070250 AAAAAAAA-GAAAAAAGAAGTG
1 AAAAAAAATGAAAAAA-AAATG
*
2070271 AATGAAAAATGA
1 AA-AAAAAATGA
2070283 GGACTCAAGG
Statistics
Matches: 83, Mismatches: 4, Indels: 24
0.75 0.04 0.22
Matches are distributed among these distances:
19 8 0.10
20 8 0.10
21 15 0.18
22 17 0.20
23 25 0.30
24 10 0.12
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (21 bp):
AAAAAAAATGAAAAAAAAATG
Found at i:2070213 original size:15 final size:14
Alignment explanation
Indices: 2070172--2070264 Score: 58
Period size: 14 Copynumber: 7.0 Consensus size: 14
2070162 AAAAACAATG
2070172 AAAAAATG--AAAA
1 AAAAAATGAAAAAA
*
2070184 AAAAAATGATGAAAA
1 AAAAAATGA-AAAAA
*
2070199 ACAAAATG----AA
1 AAAAAATGAAAAAA
2070209 AAAAAATGAAAAAA
1 AAAAAATGAAAAAA
**
2070223 AAATGATGAAAAAA
1 AAAAAATGAAAAAA
2070237 AAGAAAA--AAATAAA
1 AA-AAAATGAAA-AAA
*
2070251 AAAAAAAGAAAAAA
1 AAAAAATGAAAAAA
2070265 GAAGTGAATG
Statistics
Matches: 64, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
10 9 0.14
12 8 0.12
13 7 0.11
14 24 0.38
15 16 0.25
ACGTcount: A:0.81, C:0.01, G:0.10, T:0.09
Consensus pattern (14 bp):
AAAAAATGAAAAAA
Found at i:2070216 original size:25 final size:23
Alignment explanation
Indices: 2070182--2070282 Score: 81
Period size: 19 Copynumber: 4.5 Consensus size: 23
2070172 AAAAAATGAA
2070182 AAAAAAAATGATGAAAAACAAA-ATG
1 AAAAAAAATGA--AAAAA-AAAGATG
2070207 AAAAAAAATGAAAAAAAAATGATG
1 AAAAAAAATGAAAAAAAAA-GATG
*
2070231 AAAAAAAA-GAAAAAAATA-A--
1 AAAAAAAATGAAAAAAAAAGATG
*
2070250 AAAAAAAA-GAAAAAAGAAG-TG
1 AAAAAAAATGAAAAAAAAAGATG
*
2070271 AATGAAAAATGA
1 AA-AAAAAATGA
2070283 GGACTCAAGG
Statistics
Matches: 65, Mismatches: 4, Indels: 16
0.76 0.05 0.19
Matches are distributed among these distances:
19 16 0.25
21 3 0.05
22 8 0.12
23 16 0.25
24 11 0.17
25 11 0.17
ACGTcount: A:0.76, C:0.01, G:0.13, T:0.10
Consensus pattern (23 bp):
AAAAAAAATGAAAAAAAAAGATG
Found at i:2070221 original size:33 final size:30
Alignment explanation
Indices: 2070182--2070255 Score: 94
Period size: 36 Copynumber: 2.3 Consensus size: 30
2070172 AAAAAATGAA
2070182 AAAAAAAATGATGAAAAACAAAATGAAAAAAAAT
1 AAAAAAAATGATG-AAAA-AAAA-G-AAAAAAAT
2070216 GAAAAAAAAATGATGAAAAAAAAGAAAAAAAT
1 --AAAAAAAATGATGAAAAAAAAGAAAAAAAT
2070248 AAAAAAAA
1 AAAAAAAA
2070256 AAGAAAAAAG
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
30 8 0.21
32 8 0.21
33 1 0.03
34 4 0.11
35 4 0.11
36 13 0.34
ACGTcount: A:0.80, C:0.01, G:0.09, T:0.09
Consensus pattern (30 bp):
AAAAAAAATGATGAAAAAAAAGAAAAAAAT
Found at i:2070221 original size:36 final size:32
Alignment explanation
Indices: 2070172--2070257 Score: 118
Period size: 32 Copynumber: 2.5 Consensus size: 32
2070162 AAAAACAATG
2070172 AAAAAATGAAAAAAAAAATGATGAAAAACAAAATGAA
1 AAAAAATG-AAAAAAAAATGATG-AAAA-AAAA-G-A
2070209 AAAAAATGAAAAAAAAATGATGAAAAAAAAGA
1 AAAAAATGAAAAAAAAATGATGAAAAAAAAGA
*
2070241 AAAAAATAAAAAAAAAA
1 AAAAAATGAAAAAAAAA
2070258 GAAAAAAGAA
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
32 17 0.35
33 1 0.02
34 4 0.08
35 4 0.08
36 14 0.29
37 8 0.17
ACGTcount: A:0.80, C:0.01, G:0.09, T:0.09
Consensus pattern (32 bp):
AAAAAATGAAAAAAAAATGATGAAAAAAAAGA
Found at i:2071358 original size:41 final size:41
Alignment explanation
Indices: 2071283--2071455 Score: 256
Period size: 41 Copynumber: 4.1 Consensus size: 41
2071273 ATGTTTGTCA
*
2071283 AGGAGCAATTTACTTTCCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAG
2071325 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
2071366 AGGAACAATTTACTTTTCCAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
2071407 AGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTT-TCAAAGTCGTGGTGCCTCTGTTTAG
2071450 AGGAGC
1 AGGAGC
2071456 TTTGGTTAAA
Statistics
Matches: 119, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
41 72 0.61
42 20 0.17
43 27 0.23
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.35
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:2071490 original size:14 final size:13
Alignment explanation
Indices: 2071463--2071500 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
2071453 AGCTTTGGTT
*
2071463 AAAAACAAAAACA
1 AAAAATAAAAACA
2071476 AAAAATAAAACACA
1 AAAAATAAAA-ACA
2071490 AAAAATAAAAA
1 AAAAATAAAAA
2071501 ATAAAACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.84, C:0.11, G:0.00, T:0.05
Consensus pattern (13 bp):
AAAAATAAAAACA
Found at i:2071499 original size:21 final size:21
Alignment explanation
Indices: 2071462--2071520 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
2071452 GAGCTTTGGT
*
2071462 TAAAA-AC-AAAAACAAAAAA
1 TAAAACACAAAAAATAAAAAA
2071481 TAAAACACAAAAAATAAAAAA
1 TAAAACACAAAAAATAAAAAA
*
2071502 TAAAACA-AAAAAATGAAAA
1 TAAAACACAAAAAATAAAAA
2071521 TGTTGAGTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
19 5 0.14
20 13 0.36
21 18 0.50
ACGTcount: A:0.81, C:0.08, G:0.02, T:0.08
Consensus pattern (21 bp):
TAAAACACAAAAAATAAAAAA
Found at i:2071506 original size:14 final size:14
Alignment explanation
Indices: 2071469--2071506 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
2071459 GGTTAAAAAC
2071469 AAAAACAAAAAATA
1 AAAAACAAAAAATA
*
2071483 AAACACAAAAAATA
1 AAAAACAAAAAATA
*
2071497 AAAAATAAAA
1 AAAAACAAAA
2071507 CAAAAAAATG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (14 bp):
AAAAACAAAAAATA
Found at i:2071702 original size:17 final size:17
Alignment explanation
Indices: 2071682--2071714 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
2071672 TTTTGCATTA
2071682 TTTTTCTTTT-TATTTT
1 TTTTTCTTTTGTATTTT
2071698 TTTTTCTTTTGTATTTT
1 TTTTTCTTTTGTATTTT
2071715 AGGCATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.06, C:0.06, G:0.03, T:0.85
Consensus pattern (17 bp):
TTTTTCTTTTGTATTTT
Found at i:2072853 original size:5 final size:5
Alignment explanation
Indices: 2072843--2072952 Score: 81
Period size: 5 Copynumber: 22.6 Consensus size: 5
2072833 CCTTTTTACC
* * * *
2072843 TTTAT TTTAT TTT-T TTTCT TTTAA TTTAA TTTA- TTT-T TTTATT TTTGT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTA-T TTTAT
* *
2072891 TTTACT TTT-C TTTAT TTTA- TTTAT TTTAT TTTCACT TTTAT TTTGT
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT-A-T TTTAT TTTAT
2072937 TTTA- -TTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTT
2072953 CTTTAAATAA
Statistics
Matches: 86, Mismatches: 8, Indels: 22
0.74 0.07 0.19
Matches are distributed among these distances:
3 3 0.03
4 17 0.20
5 52 0.60
6 10 0.12
7 4 0.05
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:2072894 original size:24 final size:24
Alignment explanation
Indices: 2072843--2072957 Score: 71
Period size: 24 Copynumber: 4.7 Consensus size: 24
2072833 CCTTTTTACC
2072843 TTTATTTTATTTTTTT-TCTTTTAA
1 TTTATTTTATTTTTTTAT-TTTTAA
* **
2072867 TTTAATTTATTTTTTTATTTTTGT
1 TTTATTTTATTTTTTTATTTTTAA
* *
2072891 TTTACTTTTCTTTATTTTA--TTTAT
1 TTTA-TTTTATTT-TTTTATTTTTAA
2072915 TTTATTTTCACTTTTATTT-TGTTTT-A
1 TTTATTTT-A-TTTT-TTTAT-TTTTAA
2072941 -TTATTTTATTTTCTTTA
1 TTTATTTTATTTT-TTTA
2072958 AATAAAAATC
Statistics
Matches: 72, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
23 11 0.15
24 33 0.46
25 20 0.28
26 5 0.07
27 3 0.04
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.77
Consensus pattern (24 bp):
TTTATTTTATTTTTTTATTTTTAA
Found at i:2072914 original size:30 final size:29
Alignment explanation
Indices: 2072842--2072956 Score: 103
Period size: 29 Copynumber: 4.0 Consensus size: 29
2072832 TCCTTTTTAC
* *
2072842 CTTTATTTTATTT-TTTTTCTTTTAATTTA
1 CTTTATTTTATTTATTTTT-TTTTACTTTT
*
2072871 ATTTATTTT-TTTATTTTTGTTTTACTTTT
1 CTTTATTTTATTTATTTTT-TTTTACTTTT
*
2072900 CTTTATTTTATTTATTTTATTTTCACTTTT
1 CTTTATTTTATTTATTTT-TTTTTACTTTT
* * *
2072930 ATTTTGTTTTA-TTATTTTATTTT-CTTT
1 -CTTTATTTTATTTATTTTTTTTTACTTT
2072957 AAATAAAAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
28 7 0.10
29 32 0.44
30 24 0.33
31 9 0.12
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.77
Consensus pattern (29 bp):
CTTTATTTTATTTATTTTTTTTTACTTTT
Found at i:2072918 original size:53 final size:53
Alignment explanation
Indices: 2072848--2072957 Score: 125
Period size: 53 Copynumber: 2.1 Consensus size: 53
2072838 TTACCTTTAT
* * * * *
2072848 TTTATTTTTTTTCTTTTAATTT-A-ATTTATTTTTTTATTTTTGTTTTACTTTTC
1 TTTATTTTATTTATTTTAATTTCACATTTATTTTGTT-TTATTATTTTA-TTTTC
* *
2072901 TTTATTTTATTTATTTTATTTTCACTTTTATTTTGTTTTATTATTTTATTTTC
1 TTTATTTTATTTATTTTAATTTCACATTTATTTTGTTTTATTATTTTATTTTC
2072954 TTTA
1 TTTA
2072958 AATAAAAATC
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
53 28 0.58
54 10 0.21
55 10 0.21
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.76
Consensus pattern (53 bp):
TTTATTTTATTTATTTTAATTTCACATTTATTTTGTTTTATTATTTTATTTTC
Found at i:2073048 original size:60 final size:58
Alignment explanation
Indices: 2072957--2073427 Score: 599
Period size: 59 Copynumber: 7.9 Consensus size: 58
2072947 TATTTTCTTT
** *
2072957 AAATAAAAATCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
2073015 AAATAAATTTCCAAAAAACAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAATTT-CAAAAAA-AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
2073075 AAATAAAGTTTCCAAAAAAAAAATATTTTTGGGGACAAGTTGAAAGTATCAATTTTCCTTAA
1 AAATAAA-TTT-C--AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*** * * *
2073137 AAATAAAATTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGA
1 AAAT-AAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
2073196 AAATCAAAGTTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCATAA
1 AAAT-AAA-TTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
** * *
2073256 AAATAAAATTTCAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCATAA
1 AAAT-AAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
2073315 AAATAAATTTTC--AAAAAATCAGTTTTTGGGGAAAAGTTGAAAGTATCAATCTTCCTCT-A
1 AAATAAA-TTTCAAAAAAAAT-A-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT-TAA
* * *
2073374 AATTAAAGTTTC-AAAAGAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATAAA-TTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
2073428 CTGCGCAAGA
Statistics
Matches: 366, Mismatches: 35, Indels: 24
0.86 0.08 0.06
Matches are distributed among these distances:
57 6 0.02
58 42 0.11
59 153 0.42
60 104 0.28
61 6 0.02
62 46 0.13
63 9 0.02
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.32
Consensus pattern (58 bp):
AAATAAATTTCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:2073265 original size:119 final size:118
Alignment explanation
Indices: 2072966--2073427 Score: 639
Period size: 119 Copynumber: 3.9 Consensus size: 118
2072956 TAAATAAAAA
*
2072966 TCAAAAAAAATATTTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTCCAAA
1 TCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-CAAA
* *
2073030 AAACAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTT
65 AAA-AAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTT
*
2073085 TCCAAAAAAAAAATATTTTTGGGGACAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
1 T-C--AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
* * * *
2073150 AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTTGAAAATCAAAGTT
63 AAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTT
*
2073207 TCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCATAAAAATAAAATTTCAAAA
1 TCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
* * *
2073272 AAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCATAAAAATAAATTT
66 AAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTT
* * *
2073325 TC--AAAAAATCAGTTTTTGGGGAAAAGTTGAAAGTATCAATCTTCCTCT-AAATTAAAGTTTC-
1 TCAAAAAAAAT-A-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAAATAAAATTTCA
* *
2073386 AAAAGAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
63 AAAAAAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
2073428 CTGCGCAAGA
Statistics
Matches: 312, Mismatches: 22, Indels: 20
0.88 0.06 0.06
Matches are distributed among these distances:
116 8 0.03
117 38 0.12
118 50 0.16
119 106 0.34
120 1 0.00
121 40 0.13
122 63 0.20
123 6 0.02
ACGTcount: A:0.45, C:0.09, G:0.14, T:0.33
Consensus pattern (118 bp):
TCAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
AAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTT
Found at i:2079166 original size:890 final size:887
Alignment explanation
Indices: 2074185--2083079 Score: 7821
Period size: 904 Copynumber: 9.9 Consensus size: 887
2074175 CCGGTCCGAT
* * * *
2074185 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATACGGGCGCTCAAC
1 CTTA-ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
* * * * *
2074250 CGACCAAAGGGGCAGGATGCGTAAGTCGGGGATCGATCGAGT--CCC-C--C-T-C-A--G--CC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTACCGATCC
* * * * * * *
2074303 TGCTATCATAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCTGTATGCCTAAACCAA
130 TGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
2074368 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAA
195 CCGACGAAACGA---------------GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAA
* * * *
2074433 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTTTG-TAGTGCCAATGC
245 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA-TGCCAATGC
* *
2074497 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCATCATGTGAAGTTTCATGGCAAG
309 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAG
* * * * *
2074562 AC-ACTCGTTTTCTATTTGTCACGATTTTTTAAACTTTTTACGGTTTGGGATTTTTTTAAAACTT
374 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTT
* * * *
2074626 TTTAAGAAGGATTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
439 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
2074691 AAATAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGA-CACTTTGAAAAAAGTGTCCCCA
504 AAA-AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCA
* *
2074755 TTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATG
567 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
2074820 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGC
632 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
2074885 ACATCATGTGCGCACACCCCCCCGACCCCCCAATCGTCGGAACCCCTATGCCGCTAGTCAGGTTC
697 ACATCATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGC-AGTCAGGTTC
* * * *
2074950 TCCGACGATGATCCGGCGATGGT-GCCTCGGGCGAAAAAGAATGCGGCACCAGCACATGCCCAAG
761 TCCGACGATGCTCCGACGATGGTGGCC-CGGG-GAAAAAAAATGCGGCACCAGCACATGCCCGAG
* *
2075014 CCTAGCATGTGCACCCACAACCCTCGGTCT-G---G-TC-----C----AAT---C-T--TA-G
824 CCCAGCATGTGCACCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
* *
2075057 ----ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCT-ACGC
1 CTTAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCA-GC
* * * ** * * *
2075117 CGGCCAGAGAGGCAGGATGCGCAGGCCGGGGATGGGCCGAGTCCCCCTCAGCATGCTACTGATCC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTACCGATCC
* ** * * * * *
2075182 TACTGTCGCAACACT-TGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCA
130 TGCTACCACAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
2075246 ACCGACGAAACGAGCGGGCAGGCGGGCGGGAACAACGCTGGCCAGAGAGGCTGGATGCGAAAGTC
194 ACCGACG-AA--A-C--G-AGGCGGGC----ACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
* *
2075311 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTGTCATGCCAATGCCATT
248 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
2075376 TTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
313 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * *
2075441 CTTGTTTTCTATTTTTCACGATTTTTGAAACATTTTATGGTTCGGGATTTTTTT-AAATTTTTTC
378 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
*
2075505 AGAAGGAGTTTTGGCCTCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGGCATGCACAAAA
443 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAA
* * * * *
2075569 ACTTTTAGCTAAAAACTCGATGTGTACAGGATTTTGTGACCATTTGGAAAAAGTGCCCCCATTTC
507 A-ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
2075634 AGACACTTTAATGGCTATTGGCAGCATACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
571 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
2075699 TTCTCTAGGTTTGATGAGGGATAGGGTGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACAT
636 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *** *
2075764 CATTTGCGCACACCCCCCCG-CCCCTCAATTACCGGAACCCCAATG-C-C-GTC--G--AT-C-A
701 CATGTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCAGTCAGGTTCTCCGA
* * * * * * *
2075819 -GGTTCTCCGACGATGGTGCCCCGGACGAAAAAAAATGCGACAGCAGCACATGCCTGAGCCCAGC
766 CGATGCTCCGACGATGGTGGCCCGG-GGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
2075883 GTGTGCACCCGCAACCCGCGGTCCAGTCCGATCTTAGACTGAGAATGAACTCCGTATG
830 ATGTGCACCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
* * * * *
2075941 CTTAATCTGGGAATGAACTCCGTATGGCTAAGTCAACCCATGAAACGAGCGTGCGGGCGGTCTGC
1 CTTAA-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
* * * * * * ***
2076006 CGGCCAAAGGGGCAGGATGCGCAAGCCGAGGATTGGTCGGGCCCCCCTCTA-TGTGCTTTTGATC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC-AGCGTGCTACCGATC
**
2076070 CTGCTACCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
2076135 ACCGACGAAACGAACGGGAGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCACAAGCC
194 ACCGACG--A--AAC--GA-----GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
2076200 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
248 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATT
*
2076265 TTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
313 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA
* * * * *
2076330 CTCGTTTTCTATTTTTCACGATTTTCGAAACATTTTACGGTTTGAGATTTTTTAAAAAATTTTTC
378 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTC
2076395 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
443 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAA
* * *
2076460 AATTCACCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
507 AATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
2076525 GACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
572 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
2076590 TCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
637 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** * * * * *
2076655 ATGTGCGCATACCCCCCCCCCGCCCCCAAATTGCCGAAACCCCATTGCCGCCGATCAGGTTCTCC
702 ATGTGCGCACACCCCCCGGCC-CCCCC-AATCGTCGGAACCCCAATGCCGCAG-TCAGGTTCTCC
* * * * ** *
2076720 GACGATGGTGCC--C--T-GAGG--C---GAAAAAAAATTGCGACACAAGCACATGCTTGAGCCT
764 GACGATGCT-CCGACGATGGTGGCCCGGGGAAAAAAAA-TGCGGCACCAGCACATGCCCGAGCCC
* * *
2076775 AGCATGTACATCCTGCAA-CCTCGGTCT-G---G-TC-----C-----A--AA--TCTTA-G
827 AGCATGTGCA-CCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
* * * * *
2076816 ----ACTGGGAAATG-ACTCCGTATG-CTAAGTCAACACATG-AACGACCGTTGCGGTGTGCTCA
1 CTTAACTGGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCG-TGCGG-GCGCTCA
* * * * * * *
2076874 ACTGGCCAAAAGGGCAGAATG-GCCATAGCCCGGGATCGATCGGGTCCCCTCATCTGCCATGTGA
63 GCCGGCCAGAGGGGCAGGATGCG-CA-AGCCGGGGATCGATCGGGTCCCC-C-TCAG-C--GTG-
** * * * * * * * * *
2076938 TCTTGCGCACCCTGGTATCA-ATGTACCATGACAATAGCGTACGGTGTCAACGGCTAGAC-GGTA
120 -CTACCG-ATCCTGCTACCACA---ACCCT--C---A--GTCCGGTCTGATC--TTAGACTGG--
* * ** * * * * *
2077001 AAATCACAAGTCTGGGATCGATCGGTCACTTAAACTCTATCGACTCCTGCTCTGCTAACCTTAGT
169 GAAT--GAA--CTCCG-T--AT--G-C-C-TAAGC-C-A---A--CC-G-AC-G--AAAC-GAGG
* * ** ** ** * * *** * ** * * *
2077066 TGGTCTGACCTTAC-TTGG-GTGA-AATCTGTATGC-C-AGCCAACGAT-GAAACAAGCGGCAGA
209 CGGGC--A-C-TACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA-GGGTGGTAGG
** ** ** **** * ** * ** * * *
2077125 CAGG--CGGGCACTACGTCGCCA-GGGAC-G-GATGCGCAA-GCTGTGGATCGATAGGGTGGTAG
269 TGGGTTTAGGCAC-A--TCTTCATATTTCTGCCATGC-CAATGCCAT--TTTTAT-GGCTTGTAA
* ** ** ** * * * * *** *
2077184 GTTGGT-TTA-GG-CACAGCTTTATATTTCTGCCATGCCAATGCCATTTTTATGGGTTGTA-AAT
327 ATTCATACAATGGTC-C--C-TTA-A-GCCT-TCATG----TG-AAGTTTCATGGCAAG-ACGA-
** ** *** * * * * ***
2077245 TCATACAGTGGTCCCTTAAGC-C--TTCATCTG-AA-GTTTCATGGCAAGACGACTCGTTTTTT-
378 -C-T-C-GTTTTCTATTTTTCACGATT--TTTGAAACTTTTTACGGTTCGA-GA-T--TTTTTTA
* ** * ** * ***
2077304 --A-TTTTTC---ACGA-TTTT----TAAAAATT--TTTACG-G-T--TTGAGATTTTT-TTTAA
433 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG-TATTTTTGTTGGC
* * * ** ** *** * * * * *
2077351 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
497 A----TGCACAA-AAAATTCAGCTAAAAAC-TCG-A-A-GTG-TAC-AGGA-TTTTG-T-G-A--
*** ** *
2077416 CACAAAAAATTTCAGCTAAAAACTTAAAGTGTACAGGATTTTGTGAC-CATTTGAAAAAAGTGTC
545 C-C-----ATTT--G----AAA---AAAGTGT-CCCCA-TTTCAGACAC-TTT-----AA-TG-G
** * * * * *
2077480 CT-CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT-CTCAAATGATCTTTAAG
585 CTAC-TGGCAG-CA----AA---C--CT-GTA--AAA--TCTCAAATGCTC------T-TTAAGG
* * ** * * * * * * * * **
2077543 GGG-GTGTGAGT-TCTCGAGGTT--TGATGAGG-GATAGGGGGCCA-ATATAAGGGCCA--AGTA
627 GGGTGTGAG-TTCTCGAG-GTTTGATGA-G-GGATA-GGGGGCCAATATA-AGGGCCAAGTACCA
* * ** ** * *
2077600 CCAGCACC--CATCACA-CAACATGTTCGCACACCCCCCTTCGGCCCCCCTAATCGTCGGAACCC
686 GCA-C-CCATC-GCACATC-ATGTGCGCACAC-CCCC----CGGCCCCCCCAATCGTCGGAACCC
* * * * * * *
2077662 CAATGTCGCTGGTCAGGTTCTCTGACGATGCTCCGACAATGGTGCCCCAGGTGAAAAAAAATGCA
742 CAATGCCGC-AGTCAGGTTCTCCGACGATGCTCCGACGATGGTGGCCC-GGGGAAAAAAAATGCG
* * *
2077727 GCACCAGCACATGCCCGAGCCCAGCAAGTGCACCCACAACCCTCGGTCTGGTCCGATCTTAGACT
805 GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGGTCTAGTCCGATCTTAGACT
2077792 GGGAATGAACTTCGTATG
870 GGGAATGAACTTCGTATG
*
2077810 CTTAA----G--TCAAC-CC--A----T--G--AA---AC-----GAGCGTGCGGGCGCTCAGCC
1 CTTAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCC
* * * * * *
2077850 GGCCCGAGGGGCAGGTTGCGTAAGCCGGGGATCGACCGGGTCCCCCTCAGTGTGCTACTGATCCT
66 GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTACCGATCCT
* * * * *
2077915 GCTACCGCAACCCTCGGTTCGGTCTAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
2077980 CGACGAAACGAGTGAGCAGTCGGACGGGCACTACGCCGGCCAGAGAGGCGGGATGCACAAGCCGT
196 CGACGAAAC------G-A---GG-CGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGT
2078045 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
250 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTT
* * * *
2078110 TATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCCTCATGTGAAATTTCTTGGCAAGACGACT
315 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * * *
2078175 CGTTTTCTATTTTTGACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTTAA
380 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAG
* ** * **
2078240 AAGGATTTTTGGAACCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTCACATGCACAAAACAA
445 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AA
* * *
2078305 TTCAGCTAAGAACTCGAAGTGTACAGGATTTTGTGACCATTTGGAAAAAGTTTCCCCATTTCAGA
509 TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
2078370 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
574 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * *
2078435 TTGAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAACTACCAGCGCCCATCGCACATCAT
639 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
2078500 GTGCGCACATCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGTCGTCAGTCAGGTTCTCCGACG
704 GTGCGCACACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCG-CAGTCAGGTTCTCCGACG
2078565 ATGCTCCGACGATGGTGGCCCGGGTGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
768 ATGCTCCGACGATGGTGGCCCGGG-GAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
2078630 GTGCACCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
832 GTGCACCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
* *
2078686 CTTAATCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGC
1 CTTAA-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
** ** * * *
2078751 CGGCCAGAGGGATAGGATGCTTAGGCCGGGGATCGGTCGGGTCCCCCTCAGCGTGCTACCAATCC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTACCGATCC
* * *
2078816 TGCTACCATAACCCTCAGTCCGGTCTAATCTTAGACTGGGAATGAACAT-CGTACGCCTAAGCCA
130 TGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCCA
** * *
2078880 ACCGACGAAACGA-GCGGGCACTACATCGGTCAGAAAGGCGGGATGCGCAAGCCGTGGATCGATA
194 ACCGACGAAACGAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATA
*
2078944 GGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
259 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
* *
2079009 TAAATTCTTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTCTT-T
324 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTT-TTCT
* * * *
2079073 ATTTTTCACGATTTTTGAAACTTTTTACGATTTGGGATTTTTTTAAAATGTTTTCAGAAGGAGTT
388 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTT
* * * *
2079138 TTGGCCCCAAACTTTGTAGATGTGATCCTTGTATTTTTTTTCGCATGCACAAAAAAATTCAGCTA
453 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTA
* *
2079203 AAAAATCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAA
517 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * **
2079268 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAAATT
582 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * * * *
2079333 TGATGAGGGATAGGGGGTTCAATATAAGGGCGAGGTAGCAGCACCCATCACACATCATGTGCACA
647 TGATGAGGGATAGGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
2079398 CACCCCCC-GCCCCTCCAACCGCCGGAACCCCAATGCCGCCAGTCAGGTTCT-C--C---G----
711 CACCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCG-CAGTCAGGTTCTCCGACGATGCTCC
* * *
2079452 G-CGATGGTGGTCC--GAAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCACCC
775 GACGATGGTGGCCCGGGGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCC
* * * * *
2079514 ACAACCCTCGGTCTAATTCGATCTTAGACTGGGAATGAACTCCTTATG
840 GCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
* * * *
2079562 CTTAATCTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC-GACGCTCAGT
1 CTTAA-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
2079626 TGGCCAGAGGGGCAAGATGCGCAAGTCGAGGATCGGTCAGGTCCCCCTCAACGTTCTGCCGATCC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTACCGATCC
** * * * *
2079691 TGCTACCGTAACCCTCAATCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
2079756 CTGACGAAACGAGCGGACGATTGGGCAGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
195 CCGACGAAACGA--GG-C------G--GGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
*
2079821 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCAAGCCAATGCCATTT
249 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
* * *
2079886 TCATGGCTTGTAAATTCATACAATGGTCCCTCAACCCTTCATGTGAAGTTTCATGGCAAGACGAC
314 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
*
2079951 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCA
379 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
* * * *
2080016 GAAGGAGTTTTGGTCCCAAACTTGGTAGATGTGGTCCTTGTATTTTTTTTGGCATGCACAAAAAA
444 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAA
* * *
2080081 ATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCAGTTGAAAAAAGTGTCCCAATTTCAG
508 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
2080146 ACACTTTAATGGCTACTGGCAGCAAACCCGTAAAATCTCAAATGCTCATTAAGGGGCTGTGAGTT
573 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
2080211 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
638 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * * *
2080276 TGTGAGCACACCCCGCCCGGTCCCCCCAATCATTGGAACCCAAATGCCGCCGTTTAGGATT-TCT
703 TGTGCGCACA-CCC-CCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCAG-TCAGG-TTCTCC
* * * *
2080340 GGCAATGCTCTGACGATGGTGGCCCGAGGG-AAAAAAATGCGGCACCAGCACATGCCTGAGCCCA
764 GACGATGCTCCGACGATGGTGGCCCG-GGGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * ** *
2080404 GCATGTGCACCCGTAACCCTTGGTCTGGTCTGATCTTAGGTTGGGAATGAACTGCGTATG
828 GCATGTGCACCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
*
2080464 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
1 CTTA-ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
* * * * ** *
2080529 CGACCAGAGAGGTAGGATGTGCAAGCCGGGGATCGATCGGGT-CCCCTGCAGCAAGCTATCGATC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT-CAGCGTGCTACCGATC
* *
2080593 CTGCTTACCACAACCCTTAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CTAAGCC
129 CTGC-TACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
2080657 AACCGACGAAACGAGCGGGCGGGCGGGTGGGCATTACACAGGCCCAGAGAGGCGAGATGCGCAAG
193 AACCGACGAAACGA-------GGC----GGGCACTACGCCGG-CCAGAGAGGCGGGATGCGCAAG
* **
2080722 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGTTACATCTTCATATTTCTGCCATGCCAATGCCA
246 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCA
* * *
2080787 TTTTTATGGTTTGTAAATTCATACAATGGTCTCTTAAGCCTTCATGTGATGTTTCATGGCAAGAC
311 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* ** *
2080852 CACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTT
376 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTT
* * *
2080917 TCAGAAGGGGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCA-GACACAA
441 TCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-CACAA
* *
2080981 AAAATTTCAACTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
505 AAAA-TTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
2081046 CCAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGCTGTG
569 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
2081111 AGTTCTCGAGGTCTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
634 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
2081176 ATCATGTGAGCACACCCTGCCCGGTCCCCCCAATCATTGGAACCCCAATGCCGCCGTTTAGGATT
699 ATCATGTGCGCACACCC--CCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCAG-TCAGG-TT
* * * * * **
2081241 -TCTGGCAATGCTCTGACGATGGTGGCCTGAGGG-AAAAAAATGCGGCACCAGCACATGCCTAAG
760 CTCCGACGATGCTCCGACGATGGTGGCCCG-GGGAAAAAAAATGCGGCACCAGCACATGCCCGAG
* * ** *
2081304 CCCAGCATGTGCACCCGTAACCCTCGGTCTAGTCTGATCTTAGGTTGGGAATGAACTGCGTATG
824 CCCAGCATGTGCACCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
2081368 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
1 CTTA-ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGC
* * * * **
2081433 CGACCAGAGAGGTAGGATGTGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCAAGCTACCGATCC
65 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTACCGATCC
* **
2081498 TGCTGCCACAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
2081563 CCGACGAAACGAGCGGGCGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCCG
195 CCGACGAAACGA-----------GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCG
* ** *
2081628 TGGATCGGT-GGGTGGTAGGTGGGTTTAGTTACATCTTCATATTTCTACCATGCCAATGCCATTT
249 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTT
*
2081692 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACCAC
314 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
** *
2081757 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCA
379 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCA
* * *
2081822 GAAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACAAAAAAAA
444 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAA
* * * *
2081887 ATTCAACTAAAAACTCGAAATGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAG
508 ATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
2081952 ACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTT
573 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
2082017 CACGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
638 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
2082082 TATGCGCACACCCCCCCGCCCCCCCAATC-TCTGGAACCCCAATGCCGCCTGTCAGGTTCTCCGA
703 TGTGCGCACACCCCCCGGCCCCCCCAATCGTC-GGAACCCCAATGCCG-CAGTCAGGTTCTCCGA
** * * *
2082146 CGATGCTCCGGTGATGGT-GCCTTGGGCGAAAAAAAAATGCAGCACCCAGCACATGCTCGAGCCC
766 CGATGCTCCGACGATGGTGGCC-CGGG-G-AAAAAAAATGCGGCA-CCAGCACATGCCCGAGCCC
* * *
2082210 AGCATGTGCACTCGCAACCCT-AG----GTCCG------GTCT---AAT---C-T--TA--
827 AGCATGTGCACCCGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
* * *
2082249 ---AACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGCGTGCGGGTGCTCAGCC
1 CTTAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCC
* * ** ** * * ***
2082311 GGCCAGAGGGGCAGGATACGCAAGCCGGGGATAGGCCAAGTCCCTCTCTGCGTGCTGTTGATCCT
66 GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTACCGATCCT
* * * * * * * *
2082376 GCTACCACAACCATCAGTCTGGACCGATCTTAGACTGAGAATGAACTCCGCATACCTAAGCGAAC
131 GCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
2082441 CGACGAAACGAGCGGGCGGGTACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
196 CGACGAAACGA---GGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGAT
* * * **
2082506 AGGGTGGTAGGTGGGTTTAGGCAGATCTTCGTATTTCTACTGTGCCAATGCCATTTTTATGGCTT
258 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* * * *
2082571 GTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGGAAGACAACTCGTTTTCT
323 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* *
2082636 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGG-GTT
388 ATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAG-T
* * * *
2082700 TTTGGCCCCAAACTTGGTATATGTGATCCTTGTATTTTTTTTGGCATGCACAAGAAAAGTCAGCT
452 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA-AAAATTCAGCT
* *
2082765 AAAAACTCGAAGTGTACAGGATTTTGTCACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTA
516 AAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
2082830 ATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGT
581 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
2082895 TTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCA
646 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
2082960 CACCCCCCCCGGCCCCTCCAATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCT
711 CA--CCCCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCG-CAGTCAGGTTCTCCGACGATGCT
** * * * *
2083025 CCGGTGATGGTGCCCCGGGCAAAAAAAATGCGGCACTAGCACATGCCTGAGCCCA
773 CCGACGATGGTGGCCCGGGGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCA
2083080 AAATTAGGAT
Statistics
Matches: 6619, Mismatches: 941, Indels: 929
0.78 0.11 0.11
Matches are distributed among these distances:
863 68 0.01
864 4 0.00
865 1 0.00
866 2 0.00
867 88 0.01
868 10 0.00
869 91 0.01
870 470 0.07
871 30 0.00
872 70 0.01
873 8 0.00
874 25 0.00
875 537 0.08
876 360 0.05
877 179 0.03
878 10 0.00
879 83 0.01
880 35 0.01
881 27 0.00
882 9 0.00
883 10 0.00
884 4 0.00
885 3 0.00
886 54 0.01
887 429 0.06
888 18 0.00
889 402 0.06
890 725 0.11
891 67 0.01
892 9 0.00
893 26 0.00
894 13 0.00
895 43 0.01
896 11 0.00
897 4 0.00
898 7 0.00
899 10 0.00
900 69 0.01
901 11 0.00
902 737 0.11
903 243 0.04
904 844 0.13
905 31 0.00
906 25 0.00
907 7 0.00
908 33 0.00
909 11 0.00
910 11 0.00
911 4 0.00
912 6 0.00
913 14 0.00
914 11 0.00
915 2 0.00
916 18 0.00
917 7 0.00
918 6 0.00
919 12 0.00
920 5 0.00
923 5 0.00
924 11 0.00
925 7 0.00
926 7 0.00
927 17 0.00
928 5 0.00
929 10 0.00
930 14 0.00
931 7 0.00
932 3 0.00
933 11 0.00
934 12 0.00
935 19 0.00
936 7 0.00
937 27 0.00
938 19 0.00
939 21 0.00
940 23 0.00
941 23 0.00
942 7 0.00
943 3 0.00
945 2 0.00
947 3 0.00
948 3 0.00
950 3 0.00
952 5 0.00
953 7 0.00
954 2 0.00
955 12 0.00
956 3 0.00
957 6 0.00
960 1 0.00
961 8 0.00
962 28 0.00
963 30 0.00
964 10 0.00
965 40 0.01
966 6 0.00
967 6 0.00
968 1 0.00
969 2 0.00
970 3 0.00
971 2 0.00
972 21 0.00
973 26 0.00
974 43 0.01
975 14 0.00
978 1 0.00
979 3 0.00
982 2 0.00
984 2 0.00
986 1 0.00
989 2 0.00
991 5 0.00
992 2 0.00
993 4 0.00
994 2 0.00
998 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
CTTAACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCAGCGTGCTACCGATCCT
GCTACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
TTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGCAGTCAGGTTCTCCGACGATGCTCCGACGAT
GGTGGCCCGGGGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACC
CTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATG
Found at i:2083334 original size:19 final size:19
Alignment explanation
Indices: 2083307--2083344 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
2083297 CCAGATTTCG
2083307 GTTGAATTTTTCGACGAAA
1 GTTGAATTTTTCGACGAAA
* *
2083326 GTTGCATTTTTCGATGAAA
1 GTTGAATTTTTCGACGAAA
2083345 ATTCCGACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (19 bp):
GTTGAATTTTTCGACGAAA
Found at i:2083941 original size:4 final size:5
Alignment explanation
Indices: 2083880--2083978 Score: 82
Period size: 5 Copynumber: 19.6 Consensus size: 5
2083870 CCTTTTTACC
* *
2083880 TTTAT TTTATT TTTAT TTTA- TTTATT TTTATT TTTGT TTTACT TTT-C
1 TTTAT TTTA-T TTTAT TTTAT TTTA-T TTTA-T TTTAT TTTA-T TTTAT
*
2083927 TTTAT TTTA- TTTAT TTTAT TTTCACT TTTAT TTTGT TTTA- -TTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT
2083976 TTT
1 TTT
2083979 CTTTAAATAA
Statistics
Matches: 78, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
3 3 0.04
4 11 0.14
5 40 0.51
6 20 0.26
7 4 0.05
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (5 bp):
TTTAT
Found at i:2083942 original size:30 final size:31
Alignment explanation
Indices: 2083880--2083979 Score: 106
Period size: 27 Copynumber: 3.5 Consensus size: 31
2083870 CCTTTTTACC
*
2083880 TTTATTTTATTTTTA-TTTTA-TTTATTTT-
1 TTTATTTTATTTTCACTTTTACTTTATTTTA
* *
2083908 TAT-TTTTGTTTT-ACTTTT-CTTTATTTTA
1 TTTATTTTATTTTCACTTTTACTTTATTTTA
* *
2083936 TTTATTTTATTTTCACTTTTATTTTGTTTTA
1 TTTATTTTATTTTCACTTTTACTTTATTTTA
2083967 -TTATTTTATTTTC
1 TTTATTTTATTTTC
2083980 TTTAAATAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
26 1 0.02
27 20 0.33
28 4 0.07
29 8 0.13
30 19 0.32
31 8 0.13
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (31 bp):
TTTATTTTATTTTCACTTTTACTTTATTTTA
Found at i:2083956 original size:36 final size:34
Alignment explanation
Indices: 2083873--2083978 Score: 97
Period size: 35 Copynumber: 3.0 Consensus size: 34
2083863 TTAGTATCCT
* *
2083873 TTTTACCTTTATTTTATTTTTATTTTATTTATTTTTA
1 TTTTACTTTTA-TTT-TCTTTATTTTATTTA-TTTTA
**
2083910 TTTTTGTTTTACTTTTCTTTATTTTATTTATTTTA
1 TTTTACTTTTA-TTTTCTTTATTTTATTTATTTTA
* *
2083945 TTTTCACTTTTATTTTGTTT-TATTATTTTATTTT
1 TTTT-ACTTTTATTTTCTTTATTTTA-TTTATTTT
2083979 CTTTAAATAA
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
34 4 0.07
35 24 0.41
36 19 0.33
37 11 0.19
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (34 bp):
TTTTACTTTTATTTTCTTTATTTTATTTATTTTA
Found at i:2083972 original size:13 final size:13
Alignment explanation
Indices: 2083880--2083978 Score: 57
Period size: 14 Copynumber: 7.6 Consensus size: 13
2083870 CCTTTTTACC
2083880 TTTATTTTA-T-T
1 TTTATTTTATTAT
2083891 TTTATTTTATTTAT
1 TTTATTTTA-TTAT
*
2083905 TTT-TATTT-TTGT
1 TTTAT-TTTATTAT
*
2083917 TTTACTTTTCTTTAT
1 TTTA-TTTT-ATTAT
*
2083932 TTTATTTATTTTAT
1 TTTATTT-TATTAT
*
2083946 TTTCA-CTT-TTAT
1 TTT-ATTTTATTAT
*
2083958 TTTGTTTTATTAT
1 TTTATTTTATTAT
2083971 TTTATTTT
1 TTTATTTT
2083979 CTTTAAATAA
Statistics
Matches: 70, Mismatches: 6, Indels: 22
0.71 0.06 0.22
Matches are distributed among these distances:
11 9 0.13
12 15 0.21
13 17 0.24
14 20 0.29
15 9 0.13
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (13 bp):
TTTATTTTATTAT
Found at i:2084106 original size:119 final size:118
Alignment explanation
Indices: 2083983--2084513 Score: 673
Period size: 119 Copynumber: 4.5 Consensus size: 118
2083973 TATTTTCTTT
*
2083983 AAATAAAA-ATAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AA
1 AAATAAAATTTAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAA
*
2084046 AGTTTCCAAAAAAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
66 AGTTTCC--AAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*** * *
2084102 AAATAAAATTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTT-CTTGAAAATC
1 AAATAAAATTT-AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAAT-TTTCCTTAAAAATC
*
2084166 AAAGTTTCCAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAA
64 AAAGTTTCCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
** * *
2084221 AAATAAAATTTCAAAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCA
1 AAATAAAATTT-AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCA
* *
2084286 AAGTTTCC--AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGA
65 AAGTTTCCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
*
2084338 AAATCAAAATTTCCAAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAGTTTTCCTTAAAA
1 AAAT-AAAATTT----AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* ** *
2084403 AT-AAA-TTTTCAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT-A
61 ATCAAAGTTTCCAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAA
* * * * *
2084460 AATTAAAGTTTGAAAAGAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATAAAATTTAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
2084514 CTGTGCAAGA
Statistics
Matches: 372, Mismatches: 27, Indels: 28
0.87 0.06 0.07
Matches are distributed among these distances:
117 84 0.23
118 10 0.03
119 120 0.32
120 10 0.03
121 99 0.27
122 48 0.13
123 1 0.00
ACGTcount: A:0.45, C:0.08, G:0.14, T:0.33
Consensus pattern (118 bp):
AAATAAAATTTAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAA
AGTTTCCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAA
Found at i:2084147 original size:59 final size:59
Alignment explanation
Indices: 2083994--2084513 Score: 642
Period size: 59 Copynumber: 8.7 Consensus size: 59
2083984 AATAAAAATA
*
2083994 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCC
* *
2084053 AAAAAAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-C
1 --AAAAAA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCC
** *
2084114 AAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTT-CTTGAAAATCAAAGTTTCC
1 AAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAAT-TTTCCTTAAAAAT-AAAGTTTCC
* * *
2084175 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCC
** *
2084234 AAAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTTTCC
* * *
2084294 --AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAATTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTTTCC
* * *
2084352 AAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAGTTTTCCTTAAAAATAAA-TTTTC
1 ---AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCC
** * * *
2084413 AAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCT-AAATTAAAGTTT-G
1 AAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAAATAAAGTTTCC
*
2084472 AAAAGAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCC
2084514 CTGTGCAAGA
Statistics
Matches: 405, Mismatches: 38, Indels: 35
0.85 0.08 0.07
Matches are distributed among these distances:
57 1 0.00
58 92 0.23
59 141 0.35
60 55 0.14
61 19 0.05
62 53 0.13
63 44 0.11
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (59 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCC
Found at i:2084397 original size:180 final size:175
Alignment explanation
Indices: 2083993--2084511 Score: 754
Period size: 180 Copynumber: 2.9 Consensus size: 175
2083983 AAATAAAAAT
*
2083993 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTCCAAAAA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTT-C-AAAA
** * * *
2084058 AAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAAAGG
64 AAA-AGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAAGTTTCAAAAATA--
* *
2084123 GTTTTTGAGGAAAAGTTGAAAGTATCAATCTTTCTTGAAAATCAAAGTTTCC
125 -TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAATTTCC
2084175 -AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAA
1 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAA
2084239 AAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAATATTT
66 AAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT-AAAGTTT-CAAAAATATTT
2084304 TTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAATTTCC
128 TTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAATTTCC
* *
2084352 AAAAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAGTTTTCCTTAAAAATAAATTTTCAAAA
1 --AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
* * * *
2084417 AAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATCTTCCTCTAAATTAAAGTTTGAAAAGAATAT
64 AAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-TAAAATAAAGTTT-CAAA-AATAT
2084482 TTTT-AGGGAAAAGTTGAAAGTATCAATTTT
126 TTTTGA-GGAAAAGTTGAAAGTATCAATTTT
2084512 CCCTGTGCAA
Statistics
Matches: 313, Mismatches: 16, Indels: 18
0.90 0.05 0.05
Matches are distributed among these distances:
177 49 0.16
178 40 0.13
179 24 0.08
180 143 0.46
181 57 0.18
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.34
Consensus pattern (175 bp):
AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAAA
AAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAATAAAGTTTCAAAAATATTTTTG
AGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAATTTCC
Found at i:2087492 original size:59 final size:59
Alignment explanation
Indices: 2087240--2087644 Score: 501
Period size: 59 Copynumber: 6.7 Consensus size: 59
2087230 TTTTGCGCAG
* * * *
2087240 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTTGGAAAGCTTTA-ATTTAGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATT-TTTTTTGAAA-TTTTATTTTTA-A
* * *
2087301 GGAAGATTGATTCTTTCAACTTTTCCTCCAAAAA-ATTGATTTTTT-AACAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCC-CCAAAAATATT--TTTTTTGAA-ATTTTATTTTTAA
* *
2087362 GGAAAATTGATGCTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTTT-GAAATTTT-ATTTTTAA
* **
2087424 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAGCTTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTATTTTTAA
* * *
2087483 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAA-TTTTATTTTTAA
* * * ***
2087543 GGAAGATTGATACTTTCAACTTTTTCTCAAAAACCCTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTATTTTTAA
2087602 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
2087645 TTTTTTATTT
Statistics
Matches: 297, Mismatches: 37, Indels: 22
0.83 0.10 0.06
Matches are distributed among these distances:
59 97 0.33
60 71 0.24
61 71 0.24
62 58 0.20
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTGAAATTTTATTTTTAA
Found at i:2087561 original size:119 final size:118
Alignment explanation
Indices: 2087240--2087643 Score: 598
Period size: 119 Copynumber: 3.4 Consensus size: 118
2087230 TTTTGCGCAG
* *
2087240 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTCTTTTTGGAAAGCTTT-AATTT-AGAGG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATT-TTTTTGGAAA-CTTTGATTTTCA-AGG
* * *
2087303 AAGATTGATTCTTTCAACTTTTCCTCCAAAAAATTGATTTTTT-AACAATTTATTTTTAA
63 AAGATTGATACTTTCAACTTTTCCT-CAAAAACTT--TTTTTTGAA-ATTTTATTTTTAA
* *
2087362 GGAAAATTGATGCTTTCAACTTTTCCCCAAAAATATTTTTTTTTGGAAATTTTGATTTTCAAGGA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTTGGAAACTTTGATTTTCAAGGA
*
2087427 AAATTGATACTTTCAACTTTTCCTCAAAAAGCTTTTTTTTGAAATTTTATTTTTAA
64 AGATTGATACTTTCAACTTTTCCTCAAAAA-CTTTTTTTTGAAATTTTATTTTTAA
2087483 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAAGGAAG
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAAGGAAG
* *
2087548 ATTGATACTTTCAACTTTTTCTCAAAAACCCTTTTTTTGAAATTTTATTTTTAA
66 ATTGATACTTTCAACTTTTCCTCAAAAA-CTTTTTTTTGAAATTTTATTTTTAA
2087602 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTT
2087644 TTTTTTTATT
Statistics
Matches: 262, Mismatches: 14, Indels: 15
0.90 0.05 0.05
Matches are distributed among these distances:
119 121 0.46
121 52 0.20
122 44 0.17
123 42 0.16
124 3 0.01
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (118 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTGGAAACTTTGATTTTCAAGGAAG
ATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTTGAAATTTTATTTTTAA
Found at i:2087666 original size:9 final size:8
Alignment explanation
Indices: 2087654--2087749 Score: 54
Period size: 8 Copynumber: 11.6 Consensus size: 8
2087644 TTTTTTTATT
2087654 TAAAGAAAA
1 TAAA-AAAA
*
2087663 TAAAATAA
1 TAAAAAAA
2087671 TAAAACAAA
1 TAAAA-AAA
* *
2087680 -ATAAAAG
1 TAAAAAAA
*
2087687 TGAAAATAA
1 T-AAAAAAA
*
2087696 -AAAAAAT
1 TAAAAAAA
2087703 TAAAATAAA
1 TAAAA-AAA
* *
2087712 GAAAATTAA
1 TAAAA-AAA
2087721 -AAAAAAA
1 TAAAAAAA
2087728 TAAAAAAA
1 TAAAAAAA
2087736 TAAAAAAAA
1 T-AAAAAAA
2087745 TAAAA
1 TAAAA
2087750 TAAGGGTAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 15
0.71 0.14 0.16
Matches are distributed among these distances:
7 9 0.13
8 31 0.46
9 27 0.40
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.16
Consensus pattern (8 bp):
TAAAAAAA
Found at i:2087667 original size:5 final size:5
Alignment explanation
Indices: 2087659--2087752 Score: 76
Period size: 5 Copynumber: 19.4 Consensus size: 5
2087649 TTATTTAAAG
*
2087659 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAATT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAA-T
* *
2087704 AAAAT AAAGA- AAATT AAAAA AAAAT -AAA- AAAAT AAAA- AAAAT AAAAT
1 AAAAT AAA-AT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT
2087751 AA
1 AA
2087753 GGGTAAAAAG
Statistics
Matches: 72, Mismatches: 6, Indels: 22
0.72 0.06 0.22
Matches are distributed among these distances:
3 3 0.04
4 14 0.19
5 44 0.61
6 7 0.10
7 4 0.06
ACGTcount: A:0.80, C:0.01, G:0.03, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:2087684 original size:10 final size:9
Alignment explanation
Indices: 2087654--2087749 Score: 67
Period size: 9 Copynumber: 10.6 Consensus size: 9
2087644 TTTTTTTATT
*
2087654 TAAAGAAAA
1 TAAAAAAAA
*
2087663 T-AAAATAA
1 TAAAAAAAA
2087671 TAAAACAAAA
1 TAAAA-AAAA
2087681 TAAAAGTGAAAA
1 TAAAA---AAAA
2087693 TAAAAAAAA
1 TAAAAAAAA
*
2087702 T---TAAAA
1 TAAAAAAAA
*
2087708 TAAAGAAAAT
1 TAAA-AAAAA
2087718 TAAAAAAAA
1 TAAAAAAAA
2087727 -ATAAAAAAA
1 TA-AAAAAAA
2087736 TAAAAAAAA
1 TAAAAAAAA
2087745 TAAAA
1 TAAAA
2087750 TAAGGGTAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
6 5 0.07
8 7 0.10
9 32 0.46
10 16 0.23
12 9 0.13
ACGTcount: A:0.79, C:0.01, G:0.04, T:0.16
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:2089127 original size:26 final size:26
Alignment explanation
Indices: 2089090--2089142 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2089080 GTTGACTTAG
2089090 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
2089116 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2089142 G
1 G
2089143 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2090024 original size:26 final size:26
Alignment explanation
Indices: 2089987--2090039 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2089977 GTTGACTTAG
*
2089987 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
2090013 GCATACGAAGTTCATTTCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
2090039 G
1 G
2090040 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:2090412 original size:887 final size:886
Alignment explanation
Indices: 2087994--2096343 Score: 9591
Period size: 900 Copynumber: 9.4 Consensus size: 886
2087984 CGTAGTGCTC
* * *
2087994 GCCCGCCCGCCCACTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCCTTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
2088059 GGACTGGACCGAGGGTTACGGGAGCAGGATC-AGTAGCACACTGAGGGGGACCC-AGCCAATCCC
66 GGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCTGAGGGGGACCCGA-CCGATCCC
* * * ** *
2088122 CGGCTTGTGCATCATGCCCCTCTGGTAGGCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTA
129 CGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
* * * **
2088187 GGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAGTATAATATCAGACCAAA
194 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* ** * * *
2088252 CCGATGGTTACGGGTGCACATGCTGGGCTCATGCATGTGCTGATACCGTATTTTTTTTTCGCCCG
259 CCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTTTTTTCGCCC-
**
2088317 GGGCACCATCACCGGAGCTT-CATCAGAGAACCTGACCGATGGCATTGGGGTTCCGACGATTGGG
322 GGG---C--CACC--A--TTGCA-CAGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGG
* * *
2088381 GGGGCCGGGGGGGTGTGTGCACATGATATGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCC
377 GGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
2088446 CCTATCCCTCATCAAACCCCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTT
441 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
2088511 GCTGCCAGCAACCATTAAAGTGTCCGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
506 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGT
* * *
2088576 ACACTACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCCACAAAAATAAAAGGATCACGTCTACC
571 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* ** **
2088641 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT-GAAAAATCCCAAACCGTAAAAAGTTTTGA
636 AAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACC--AAAAAGTTTCAA
* * *
2088705 AAATCGTGAAAAATACAAAGCGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
699 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCA
*
2088770 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTACCTAAAC
764 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAAC
** * *
2088835 CCACCTACCACCCTATCGATCCACGACTTGCGCATCTTGCTTCTCTGGCCGGCGTAATGCCC
829 CCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGT-A-G--T
* * *
2088897 GCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * * * **
2088962 AGACCGGATTGAGGGTTGCGGCAGCAGGATTGACAGTATGCTGAGGGGGA-CCGAGTCGAT-CTT
66 GGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTGAGGGGGACCCGA-CCGATCCCC
* * * * ** *
2089025 GGCTTACGCATCTTGCCCCTCTGGCCGACTGAGCGCTTGCACGCTCGTTTCGTTGGTTGACTTAG
130 GACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
2089090 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCGGAC
195 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* ** * * * * *
2089155 CGACGGTTGTGGGTGCACATG-TCGGCCTCGGGCGTGTGCTCGTGCCGTATTTTTTTTCGCTCGG
260 CGAGGGTTACGGGTGCACATGCT-GGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGG
* * *
2089219 GCCACCATCACCGGAGCATCACCAGAGAACTTGACC-AGCAGCATTGGGGTTCCGGCGATTGGGG
324 GCCACCAT------TG---CA-CAGAGAACCTGACCGA-CAGCATTGGGGTTCCGACGATTGGGG
* *
2089283 GGCCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
378 GGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
*
2089348 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGC
443 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
2089413 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCCTGTAC
508 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* * * *
2089478 ACTTCGAGTTTTTAGCTGAATTTTTTTATGCTTGCCAAAAAAAATACAAGGATCACGTCTACCTT
573 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC-A
* * * * **
2089543 TGTGTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAATCATAAAGTTTTGAAAA
637 AGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCAAAAAGTTTCAAAAA
* * * *
2089608 TCGTAAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
702 TCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTG
2089673 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
767 TATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCA
* * * * *
2089738 CCGACCACCCTATTGATCCACGGCTTGCACATCCTGCCTCTCT-GCTCGGCGTAGT
832 CCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGC-CGGCGTAGT
* * * * *
2089793 GCCTGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATT
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * * * *
2089858 AGATCAAACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCTGTGGTGAACCCGACCGATCCCCG
66 GGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTGAGGGGGACCCGACCGATCCCCG
* * * * * * *
2089923 ACTTGCGTATCCTGCTCCTTTGGTCGGCTGAGTGCCCACACGCTCGTTTTGTGGGTTGACTTAGG
131 ACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
2089988 CATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTTCCAGTCTAAGATCAGATCGGACC
196 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
* * *
2090053 GAAGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCT-GTGCCGCATTTTTTTTCTCCCTGGC
261 GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGC
** * * * *
2090117 CACCATTGCA-AGAGAACCTGACAAACGGCATTGTGGTTCAGGCGATTGGAGGGGGCGGGGCGGG
326 CACCATTGCACAGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGG-GGGGGCGGGG-GGG
* * **
2090181 TTTGCGCACATGATGTGTGATGGGAACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
389 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * **
2090246 AAACCTCAAGAAGTCACACCCCATTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGAA
454 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
2090311 ATTAAAGTGTCTGCAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
519 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTT
*
2090376 TTAGCTGAATTTTTTTGTGCATGCCAACAGAAATACAAGGATCACGTCTACCAAGTTT-GGGCCA
584 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
2090440 AAACTCCTACTGAAACAATTTTAAAAAAAT-CTCGAACAGTAAAAAGTTTCAAAAATCATGAAAA
649 AAACTCCTTCTGAAAAAATTTTAAAAAAATCCT-GAAC--CAAAAAGTTTCAAAAATCATGAAAA
* * * *
2090504 ATAGAAAACGAGTTGTCTTGCCATGAAACTTCACATGAAGGCTTAAAGGACCACTGCATGAATTT
711 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTT
* * *
2090569 ACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAATCCACCTTCCACC
776 ACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * * * *
2090634 CTATCAATCCATGGCTTACGCATCCCGCCTCTTTGGCCGACATAGT
841 CTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
* * *
2090680 ----GCCCG--C-CT-GTTTCATCGGTTGGCTTAGGCATACGTAGTTCATTCCCAGTCGAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * ** * * * *
2090737 GAACCGGATCGAGGGTTTTGGTAGTAAGATCTG---TCACGCTGAGGGGGACCCGACCGATCCCC
66 GGACCGGACCGAGGGTTGCGGCAGCAGGATC-GACAGCACGCTGAGGGGGACCCGACCGATCCCC
* * * *
2090799 GGCTTGTGCATCCTGCCCCTCTGGTCGG-TCGAGCGCCTC-CACGTTCG-TTCGTGGGTTGACTT
130 GACTTGCGCATCCTGCCCCTCTGGCCGGCT-GAGCGCC-CGCACGCTCGTTTCGTGGGTTGACTT
* * * * *
2090861 AGGCATACGGTGGTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAAACCGG
193 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* ** * * * *
2090926 ACTGAGGGTTGTGAGTGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTA-TTTTTTTCACCCG
258 ACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCG
* * * * * **
2090990 GGCCACCCTCG-TCGGAGAACCTGACCCG-C-GACGTTGGGGTTCCGACGATTGGGGGGTTGGGG
323 GGCCACCATTGCACAGAGAACCTGA-CCGACAG-CATTGGGGTTCCGACGATTGGGGGGGCGGGG
* * * *
2091052 GGGTGTGCGCCCATGATGTGCAATGGGTACTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTC
386 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
2091117 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTACCAGTA
451 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * ** * * * *
2091182 GACATTAAAGTGTCTGAATTGGGGACACTTTTTTCAAACAGTCACAAAATCCTATACATTTCAAA
516 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
*
2091247 TTTTTAGCTGAA-TTTTTTGTGCATGCTC-ACAAAAATACAAGGATCACGTCTACGAAGTTTGGG
581 TTTTTAGCTGAATTTTTTTGTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * *
2091310 GCCAAAACGCCTTCTGAAAACA-TTTAAAAAAAT-CTCGAACCATAAAAAGTTTCAAAAATCGTG
645 GCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCT-GAACC--AAAAAGTTTCAAAAATCATG
* * *
2091373 AAAAATAGAAAATGAGTTGTCTTGTCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
707 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGA
* *
2091438 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACTCACCTAT
772 ATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
2091503 CACCCTATCGATCCACGTCTTGCGCATCCTGCCTCTCTGGCCGGCGTAGT
837 CACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
* *
2091553 GCCCGCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * ** * *
2091618 GGACCGGAACAAGGGTTGCCGTAGCAGGATCGGTAGCACACTGAGGGGGACCCGACCAATCCCCG
66 GGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTGAGGGGGACCCGACCGATCCCCG
* * * *
2091683 ACTTGCGCATCTTACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGTTTCACTTAGG
131 ACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
2091748 CATACGGAGTTCATT-CC---C-AA-CCTA---A---CA-T--C-G-----GAT-----CGGACT
196 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
** * * *
2091787 GAGGGTTGTGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCTCGGGG
261 GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGC
* *
2091852 CACCATCGTTCGAGCATCGTCGGAGAACCTGACCGACAGCATTGGGGTTCCGATGATTGGGGGGG
326 CACCA---TT---GCA----CAGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGGG
* * *
2091917 CCGGGGGGTGTACGCACATCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
381 CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
** * * * * *
2091982 CTGTCATCAAACCTTGAGAACCCAAACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTAC
446 CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
2092047 CAGTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
511 C---AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTAC
* * *
2092112 ACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATACCAACAAAAATACAAGGATCACATCTACCAA
573 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* * * * *
2092177 GTTTGGGGCCAAAAATCCTTTTGAAAAAATTTTTAAAAAATCCCGGACCGTAAAAAGTTTCAAAA
638 GTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACC--AAAAAGTTTCAAAA
* * *
2092242 ATTATGAAAAGTAGAAAACGAGTCGTCCTGCCATGAAACTTCACATGAAGGCTTAATGGGACCAT
701 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA-GGGACCAT
* ** * *
2092307 TGTATGAATTTACAAGCCATAAAAGTGGCATTGGTGTGGAAAAAATATGAAGATGTGCCTAAACC
765 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACC
* ** *
2092372 CACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTAGCCGATGCAGT
830 CACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
* * * *
2092429 GCCCACCCGCCCGCTCGTTCCGTCGGTTGG-TTAGGCATGC-GATGTTCATTTCCAGTCTAAGAT
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAGTCTAAGAT
* ** * * * * * * *
2092492 TGGACAAGACCGAGGGTTGTGGCCGCAAGATC-AGCAGCACACAGA-GAGGACCAGACCGATCCC
65 CGGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCTGAGGGGGACCCGACCGATCCC
* * * * *
2092555 CGGCTTGCACATCCTGCCCCTCTGGCCGGCTGAGCACCCTCACGCTCGTTTCATGGGTTGACTTA
129 CGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTA
2092620 GGCATACGGAGTTCATTCCCAG-C----C-TA---AG---------A-TC---G---A-ACCGGA
194 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
* * * * *
2092659 CCGAGGGTTACGAGTGCAAATGCTGGGCTTGGGCATGTGCTTGTG-C-CATATTTTTTTCACCCG
259 CCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT-TTTTTTTCGCCCG
* * * *
2092722 GGGCACCATCGTCGGAGCATCGTCGGAGAACTTGACC-AGCGGCATTGGGGTTCCCACGATTGGG
323 GGCCACCAT--T----GCA----CAGAGAACCTGACCGA-CAGCATTGGGGTT--C-C-------
*
2092786 GGAGCCGGATGGGTGTGCGCACATGATGTGCGATGGGTGGGGGGGTGTGCGCACATGATGTGCGA
367 -GA--C-GA------T-------TG--G-G-G--GGGCGGGGGGGTGTGCGCACATGATGTGCGA
* *
2092851 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTAGA-AACTCACACC
409 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
2092915 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
474 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
2092980 GACATTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGC
539 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
2093045 ATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATT
604 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATT
* *
2093109 TTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGC
669 TTAAAAAAATCCTGAACC--AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
2093174 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATT
732 CATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
2093239 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGT
797 GGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
* *
2093304 ATCCCGTCTCTCTGGTCGGCGTAGT
862 ATCCCGCCTCTCTGGCCGGCGTAGT
* *
2093329 GCCCGCCCGCCCACTCGTTTCGTCAGTTGG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * * * * * * *
2093393 AGATTGGATCGAGGGTTACAGTAGCAGGATTGGCAGCACGCAGA-GGGGACCCGACCGATCCTCG
66 GGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTGAGGGGGACCCGACCGATCCCCG
** * * * * *
2093457 ACTTGCAAATCCTGCCCCTTTGGCCGGCTAAGCGCCCGCACGTTCATTTCGTAGGTTGACTTAGG
131 ACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* ** *
2093522 CATA-GAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCACTCTAAGATTGGACCAGAC
196 CATACG-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAC
* * * * ** *
2093586 CGAGGGCT-CTGGGTGCACATGCTGGGCTCGAGCATGTCCTGGAGCCATATTTTTTTTTTAGCCC
260 CGAGGGTTAC-GGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA--TTTTTTTTCGCCC
* * * * ** * * *
2093650 GGGCCACCA-T-CACTGGAGAATCTGACCGACAGCATTGAGGTTTCGGGGTTTGAGGGGCCGGGG
322 GGGCCACCATTGCAC-AGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGGGCGGGG
* **
2093713 GGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTTTCCCCCTATCCCTC
386 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * *
2093778 ATCAAACCTCGACAACTCATACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTA
451 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
2093843 GCTATTAAAGTGTCTAAAATGGGGACACTTTTTCCAAATGGTCTCAAAATCCTGTACACTTCGAG
516 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAG
* * * *
2093908 TATTTAGCTGAATTTTTTTATGCATGCCAACACAAATACAAGGATCACGTCTACCATGTTTGGGG
581 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * *
2093973 CCAAAAATCCTTCTGAAAAAATTTTAAAAAAAT-CTCAAACCGCAAAAAGTTTCTAAAGTCATGA
646 CCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCT-GAA-C-CAAAAAGTTTCAAAAATCATGA
* *
2094037 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGACTTAAGGGACCATTGTGTGAA
708 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAA
*
2094102 TTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
773 TTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
2094167 ACCCTATCGATCCGCGACTTGAGCATCCCGCCTCTCTGGCCGACGTAGT
838 ACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
* * *
2094216 ACCCGCCCGCCCGTTCGTTTCGTAGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
1 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
2094281 GGACCAGACTGAGGGTTGTGGCAGCAGGATTGACAGCAAG-TAGAGTGGGACTCGACCGATCCCC
66 GGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCT-GAGGGGGACCCGACCGATCCCC
* * * * *
2094345 GACTTACGCATCCTACCCCTCAGGCCGACTGAGCGCCCGCACGCTAGTTTCGTGGGTTGACTTAG
130 GACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * * *
2094410 GCATACGAAGTTGATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCTA-ACCAGA
195 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGA
* * * *
2094474 CCGAGGGTTACAGGTGCACATGCTGGGCTCTGGCATGTGCTGGTGCCG--TATTTTTTCACCCGG
259 CCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGG
* * ** *
2094537 GGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGACAGCATTACGGTTCCGACGAATGGGGG
324 GCCACCATTG-C--A-CA------GAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGG
*
2094602 GGC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
379 GGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
**
2094666 ATCCCTCATCAAACCTTTAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
444 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
2094731 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
509 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACA
* * *
2094796 CTTCGAGTTTTTCGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG
574 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
2094861 TTTGGGGCCAAAACTCTTTTTGACAAAATTTTTAAAAAAT-CTCGAACTGTAAAAAGTTTCAAAA
639 TTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAAATCCT-GAAC--CAAAAAGTTTCAAAA
* * * *
2094925 ATCGTGAAAAATAAAAAATGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
701 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATT
* *
2094990 GTATCAATTTACAAGCCATAAAAATGGCATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCC
766 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
2095055 ACCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGT
831 ACCTACCACCCTATCGATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
* * * *
2095111 GCCTGCCTGCCCGCCTGCTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCCAA
1 G-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * * *
2095176 GATCGGACCAGAGTGAGAGTTGCGGTAGCAGGATC-AGCAGCACGCAGAAGGGGACCCGGCAGAT
62 GATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCTGAGGGGGACCCGACCGAT
* ** * * * **
2095240 CCCCGGCTTGCATATCCTGCCCCTCTGGCCGGTTGAGCGCCTGCACGCTCGTTTCATTAGTTGAC
126 CCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
** * * * ** *
2095305 TTAGGCATACAAAGTTCATTCCTAGTCTAAGCATATGGTGTTCATTCCCAGTCTAAGATTGGACT
191 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * * *
2095370 GGATCGAGGGTTGCGGGTGCACATACTGGGCTCGAGCATGTGCTGGTGCCACA-TTTTTTTCGCC
256 GGACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCC
* * * * * *
2095434 CGAGCCACCATCACCGGAGCATCACTGGAGAACCAGACCGGCAGCATTGGGGTTTCGATGATTGG
321 CGGGCCACCAT------TGCA-CA---GAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGG
* * *
2095499 GGGGGCAAGGGGGGTTTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
376 GGGGGC--GGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
*
2095564 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
438 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
2095629 TTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
503 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
* * * * * * *
2095694 TGTACAGTTCGAGTTTTTAGCTGAATCTTTTTGTGCATACCAGCAAAAATATATGGATCACATCT
568 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
* * * * * *
2095759 ACCAA-TTTGGGGCTAAAACTACTTCAGAAAGAATTTTTTAAAAAATCCCGAACCGTAAAAAGTT
633 ACCAAGTTTGGGGCCAAAACTCCTTCTGAAA-AAATTTTAAAAAAATCCTGAACC--AAAAAGTT
* *
2095823 TCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAGGGG
695 TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGG
*
2095888 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGTAGAAATATGAAGATGTGCCT
760 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCT
* * * * *
2095953 AAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCTCC-CTTCTCTAGCCAGCGTAGT
825 AAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC-CCGCCTCTCTGGCCGGCGTAGT
* * * *
2096015 GCCCGCTAGCCCGCCCGTTAGTTTCGTCGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
1 G-CC-C--GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** * ** * * *
2096080 GATCAGACCGGATTGAGGGTTGTAGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACTGATA
62 GATCGGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTGAGGGGGACCCGACCGATC
* * * * * * *
2096145 CTCGACTTTCGCATCCCGCCCCACTGGCCGGCTGAGCACCCACACGCTCATTTCGTGGGTTGACT
127 CCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * * * * * * *
2096210 TAGCCATATGGAGTTCATTTCTAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGATCG
192 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCG
* * * *
2096275 GACCAAGGGTTACGGGTGCATATGCTGTGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCC
257 GACCGAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCC
2096340 GGGC
322 GGGC
2096344 ATTGGCATGG
Statistics
Matches: 6385, Mismatches: 850, Indels: 422
0.83 0.11 0.06
Matches are distributed among these distances:
858 50 0.01
859 17 0.00
862 1 0.00
863 3 0.00
865 1 0.00
868 1 0.00
869 3 0.00
870 152 0.02
871 2 0.00
872 7 0.00
873 371 0.06
874 406 0.06
875 151 0.02
876 301 0.05
877 74 0.01
878 4 0.00
879 66 0.01
880 7 0.00
881 69 0.01
882 1 0.00
883 69 0.01
884 34 0.01
885 165 0.03
886 150 0.02
887 688 0.11
888 69 0.01
889 163 0.03
890 4 0.00
891 4 0.00
893 2 0.00
894 1 0.00
895 464 0.07
896 163 0.03
897 149 0.02
898 6 0.00
899 257 0.04
900 771 0.12
901 226 0.04
902 261 0.04
903 129 0.02
904 683 0.11
905 63 0.01
906 80 0.01
907 1 0.00
909 2 0.00
915 1 0.00
917 1 0.00
918 23 0.00
919 3 0.00
921 2 0.00
922 1 0.00
925 1 0.00
926 41 0.01
927 1 0.00
928 1 0.00
929 18 0.00
930 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
GGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCTGAGGGGGACCCGACCGATCCCCG
ACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACC
GAGGGTTACGGGTGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTTTTCGCCCGGGC
CACCATTGCACAGAGAACCTGACCGACAGCATTGGGGTTCCGACGATTGGGGGGGCGGGGGGGTG
TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
ACTCCTTCTGAAAAAATTTTAAAAAAATCCTGAACCAAAAAGTTTCAAAAATCATGAAAAATAGA
AAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
GATCCACGACTTGCGCATCCCGCCTCTCTGGCCGGCGTAGT
Found at i:2092832 original size:32 final size:32
Alignment explanation
Indices: 2092796--2092856 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
2092786 GGAGCCGGAT
2092796 GGGTGTGCGCACATGATGTGCGATGGGTGGGG
1 GGGTGTGCGCACATGATGTGCGATGGGTGGGG
2092828 GGGTGTGCGCACATGATGTGCGATGGGTG
1 GGGTGTGCGCACATGATGTGCGATGGGTG
2092857 CTGGTACTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.13, C:0.13, G:0.51, T:0.23
Consensus pattern (32 bp):
GGGTGTGCGCACATGATGTGCGATGGGTGGGG
Found at i:2094439 original size:26 final size:26
Alignment explanation
Indices: 2094410--2094462 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
2094400 GTTGACTTAG
* *
2094410 GCATACGAAGTTGATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
2094436 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
2094462 G
1 G
2094463 ATCTAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:2095744 original size:904 final size:896
Alignment explanation
Indices: 2091747--2096342 Score: 5655
Period size: 904 Copynumber: 5.1 Consensus size: 896
2091737 TTTCACTTAG
** * * * * **
2091747 GCATACGGAGTTCATTCCCAACCTAACATCGGATCGGACTGAGGGTTGTGGGTGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
* **
2091812 CTCGGGCATGTGCTGGTGCCACATTTTTTTTCGCTCGGGGCACCATCGTTC-GAGCATCGTCGGA
66 CTCGGGCATGTGCTGGTGCCACA-TTTTTTTCGCCCGGGGCACCATC-ACCGGAGCATCGTCGGA
* * *
2091876 GAACCTGACCGACAGCATTGGGGTTCCGATGATTGGGGGGGCCGGGGGGTGTACGCACATCATGT
129 GAACCTGACCGACAGCATTGGGGTTCCGATGATTGGGGGGGCAGGGGGGTGTGCGCACATGATGT
** * *
2091941 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTGTCATCAAACCTTGAGAACCCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
2092006 AACCCCCTTAAAGAGGATTTGAGATTTTACAGGTTTGCTACCAGTAGTAGCCATTAAAGTGTCTG
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC---AGTAGCCATTAAAGTGTCTG
*
2092071 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
2092136 TTTGTGCATACCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTTTGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGA
* * *
2092201 AAAAATTTTTAAAAAATCCCGGACCGTAAAAAGTTTCAAAAATTATGAAAAGTAGAAAACGAGTC
451 AAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
2092266 GTCCTGCCATGAAACTTCACATGAAGGCTTAATGGGACCATTGTATGAATTTACAAGCCATAAAA
516 GTCTTGCCATGAAACTTCACATGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAA
* ** * *
2092331 GTGGCATTGGTGTGGAAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
580 ATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
2092396 ACTTGCGCATCCCGCCTCTCTAGCCGATGCAGTGCCCACCCGCCCGCTCGTTCCGTCGGTTGG-T
645 ACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * *
2092460 TAGGCATGC-GATGTTCATTTCCAGTCTAAGATTGGACAAGACCGAGGGTTGTGGCCGCAAGATC
710 TAGGCATACGGA-GTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATC
* * * *
2092524 AGCAGCACACAGAGAGGACCAGACCGATCCCCGGCTTGCACATCCTGCCCCTCTGGCCGGCTGAG
774 AGCAGCACGCAGAGGGGACCCGACCGATCCCCGACTTGCACATCCTGCCCCTCTGGCCGGCTGAG
* *
2092589 CACCCTCACGCTCGTTTCAT-GG--G--TT--G-------A---C--T--TAG-----
839 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAA
* * * * *
2092621 GCATACGGAGTTCATTCCCAGCCTAAGATCGAACCGGACCGAGGGTTACGAGTGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
* * * * **
2092686 CTTGGGCATGTGCTTGTGCCATATTTTTTTCACCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTCGCCCGGGGCACCATCACCGGAGCATCGTCGGAGA
* * *
2092751 ACTTGACC-AGCGGCATTGGGGTTCCCACGATTGGGGGAGCCGGATGGGTGTGCGCACATGATGT
131 ACCTGACCGA-CAGCATTGGGGTT--C-CGA-T----------GAT---TG-G-G-----G--GG
2092815 GCGATGGGTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
169 GC-A------GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
2092880 CCCCCTATCCCTCATCAAACTTAGA-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
227 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
*
2092944 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCC
292 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCC
* *
2093009 TGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAA-AAAAATACAAGGATCATGTCT
357 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
*
2093073 ACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAAATCCCGAACCGTAAAAAGTTT
422 ACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTT
*
2093138 CAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
487 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGA
*
2093203 CCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
552 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGGCAGAAATATGAAGATGTGCCTA
* * *
2093268 AACCCACCTACCACCCTATCGATCCACGACTTGCGTATCCCGTCTCTCTGGTCGGCGTAGTGCCC
617 AACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC
* * * *
2093333 GCCCGCCCACTCGTTTCGTCAGTTGG-TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAT
682 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC
** *** * ** *
2093397 TGGA-TCGAGGGTTACAGTAGCAGGATTGGCAGCACGCAGAGGGGACCCGACCGATCCTCGACTT
747 CAGACT-GAGGGTTGTGGCAGCAGGATCAGCAGCACGCAGAGGGGACCCGACCGATCCCCGACTT
* * * * * * *
2093461 GCAAATCCTGCCCCTTTGGCCGGCTAAGCGCCCGCACGTTCATTTCGTAGGTTGACTTAGGCATA
811 GCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
* * *
2093526 GAGAGTTCATTCCCAGTCTAA
876 CAAAGTTCATTCCTAGTCTAA
* * *
2093547 GCATACGGAGTTCATTCCCACTCTAAGATTGGACCAGACCGAGGGCT-CTGGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTAC-GGGTGCACATGCTGG
* * * * * *
2093611 GCTCGAGCATGTCCTGGAGCCATATTTTTTTTTTAGCCC-GGG---C--CACC--ATCA-C-T-G
65 GCTCGGGCATGTGCTGGTGCCACA---TTTTTTTCGCCCGGGGCACCATCACCGGAGCATCGTCG
* * * ** * * * *
2093665 GAGAATCTGACCGACAGCATTGAGGTTTCGGGGTTTGAGGGGCCGGGGGGGTGTGCGCACATGAT
127 GAGAACCTGACCGACAGCATTGGGGTTCCGATGATTGGGGGGGCAGGGGGGTGTGCGCACATGAT
* ** *
2093730 GTACGATGGGTGCTGGTACTTGGCCCTTATATTTTCCCCCTATCCCTCATCAAACCTCGACAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
2093795 CATACCCCCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
2093860 AATGGGGACACTTTTTCCAAATGGTCTCAAAATCCTGTACACTTCGAGTATTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * *
2093925 TTATGCATGCCAACACAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAAATCCTTCTGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAA
* * * * * *
2093990 AAAATTTTAAAAAAATCTCAAACCGCAAAAAGTTTCTAAAGTCATGAAAAATAGAAAACGAGTCG
452 AAAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
2094055 TCTTGCCATGAAACTTCACATGAAGACTTAAGGGACCATTGTGTGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
2094120 GGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGCGAC
582 GGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGAC
* * * * *
2094185 TTGAGCATCCCGCCTCTCTGGCCGACGTAGTACCCGCCCGCCCGTTCGTTTCGTAGGTTGGCTTA
647 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
*
2094250 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGAT-TGA
712 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCAG-
* * * * * * * *
2094314 CAGCAAGTAGAGTGGGACTCGACCGATCCCCGACTTACGCATCCTACCCCTCAGGCCGACTGAGC
776 CAGCACGCAGAG-GGGACCCGACCGATCCCCGACTTGCACATCCTGCCCCTCTGGCCGGCTGAGC
* * * *
2094379 GCCCGCACGCTAGTTTCGTGGGTTGACTTAGGCATACGAAGTTGATTCCTAGTCTAA
840 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAA
* * * *
2094436 GCATATGGAGTTCATTCCCAGTCTAAGATCT-AACCAGACCGAGGGTTACAGGTGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGGACCGGACCGAGGGTTACGGGTGCACATGCTGG
* ** * * *
2094500 GCTCTGGCATGTGCTGGTGCCGTA-TTTTTTCACCCGGGGCACCATCGCCAGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTTTCGCCCGGGGCACCATCACCGGAGCATCGTCGGAG
** * *
2094564 AACCTGACCGACAGCATTACGGTTCCGACGAATGGGGGGGCA-GGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACAGCATTGGGGTTCCGATGATTGGGGGGGCAGGGGGGTGTGCGCACATGATGTG
**
2094628 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTTAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
2094693 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
2094758 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTCGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
2094823 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCTTTTTGACAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAA
* * * * * *
2094888 ATTTTTAAAAAATCTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCATCT
455 ATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
2094953 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
2095018 ATTGGCACGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
585 ATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
* * *
2095083 CACATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCTGCCCGCCTGCTCGTTTTGTCGGTTGGCTT
650 CGCATCCCGTCTCTCTGGCCGACGTAGTG-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
2095148 AGGCATACGGAGTTCATTCCTAGTCCAAGATCGGACCAGAGTGAGAGTTGCGGTAGCAGGATCAG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCAG
* * * * *
2095213 CAGCACGCAGAAGGGGACCCGGCAGATCCCCGGCTTGCATATCCTGCCCCTCTGGCCGGTTGAGC
776 CAGCACGCAG-AGGGGACCCGACCGATCCCCGACTTGCACATCCTGCCCCTCTGGCCGGCTGAGC
* **
2095278 GCCTGCACGCTCGTTTCATTAGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAA
840 GCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAA
* * * * * *
2095335 GCATATGGTGTTCATTCCCAGTCTAAGATTGGACTGGATCGAGGGTTGCGGGTGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
* * * *
2095400 CTCGAGCATGTGCTGGTGCCACATTTTTTTCGCCCGAGCCACCATCACCGGAGCATC-ACTGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTTTCGCCCGGGGCACCATCACCGGAGCATCGTC-GGAG
* * * *
2095464 AACCAGACCGGCAGCATTGGGGTTTCGATGATTGGGGGGGCAAGGGGGGTTTGTGCACACATGAT
130 AACCTGACCGACAGCATTGGGGTTCCGATGATTGGGGGGGC-AGGGGGG--TGTGCGCACATGAT
* *
2095529 ATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
*
2095594 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
2095659 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATCTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * * * **
2095724 TTGTGCATACCAGCAAAAATATATGGATCACATCTACCAA-TTTGGGGCTAAAACTACTTCAGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAA
* *
2095788 AGAATTTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTC
452 A-AAATTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
2095853 GTCTTGCCATGAAACTTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
2095918 TGGCATTGGCATGGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
581 TGGCATTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA
* * * * *
2095983 CTTGTGCATCTCCCT-TCTCTAGCC-AGCGTAGTGCCCGCTAGCCCGCCCGTTAGTTTCGTCGGT
646 CTTGCGCATC-CCGTCTCTCTGGCCGA-CGTAGTG-CC-C--GCCCGCCCGCTCGTTTCGTCGGT
* * * * * * *
2096046 TGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGTAGCAGTAG
705 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAG
* * * * * * * * *
2096111 GATCGGTAGCACGCAGAGGGGGACCCGACTGATACTCGACTTTCGCATCCCGCCCCACTGGCCGG
770 GATCAGCAGCACGCAGA-GGGGACCCGACCGATCCCCGACTTGCACATCCTGCCCCTCTGGCCGG
* * * * * *** *
2096176 CTGAGCACCCACACGCTCATTTCGTGGGTTGACTTAGCCATATGGAGTTCATTTCTAGTCTAA
834 CTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAA
* * * * * * *
2096239 GCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGACCAAGGGTTACGGGTGCATATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
* *
2096304 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTTGCCCGGG
66 CTCGGGCATGTGCTGGTGCCACA-TTTTTTTCGCCCGGG
2096343 CATTGGCATG
Statistics
Matches: 3201, Mismatches: 414, Indels: 183
0.84 0.11 0.05
Matches are distributed among these distances:
872 3 0.00
873 55 0.02
874 76 0.02
875 1 0.00
876 3 0.00
877 1 0.00
885 84 0.03
886 140 0.04
887 285 0.09
888 64 0.02
889 166 0.05
890 4 0.00
891 4 0.00
892 3 0.00
893 3 0.00
894 2 0.00
895 462 0.14
896 36 0.01
897 1 0.00
898 3 0.00
899 259 0.08
900 329 0.10
901 145 0.05
902 101 0.03
903 23 0.01
904 686 0.21
905 62 0.02
906 74 0.02
907 1 0.00
914 1 0.00
915 2 0.00
917 1 0.00
918 22 0.01
919 3 0.00
920 1 0.00
921 5 0.00
923 2 0.00
925 2 0.00
926 73 0.02
928 3 0.00
929 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGGTGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTTTCGCCCGGGGCACCATCACCGGAGCATCGTCGGAGA
ACCTGACCGACAGCATTGGGGTTCCGATGATTGGGGGGGCAGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTTGAAAAAA
TTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGTGGCAGCAGGATCAGCAGCA
CGCAGAGGGGACCCGACCGATCCCCGACTTGCACATCCTGCCCCTCTGGCCGGCTGAGCGCCCGC
ACGCTCGTTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAA
Done.